BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 046127
(345 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2CSX|A Chain A, Crystal Structure Of Aquifex Aeolicus Methionyl-Trna
Synthetase Complexed With Trna(Met)
pdb|2CSX|B Chain B, Crystal Structure Of Aquifex Aeolicus Methionyl-Trna
Synthetase Complexed With Trna(Met)
pdb|2CT8|A Chain A, Crystal Structure Of Aquifex Aeolicus Methionyl-Trna
Synthetase Complexed With Trna(Met) And
Methionyl-Adenylate Anologue
pdb|2CT8|B Chain B, Crystal Structure Of Aquifex Aeolicus Methionyl-Trna
Synthetase Complexed With Trna(Met) And
Methionyl-Adenylate Anologue
Length = 497
Score = 264 bits (674), Expect = 6e-71, Method: Compositional matrix adjust.
Identities = 133/256 (51%), Positives = 165/256 (64%), Gaps = 11/256 (4%)
Query: 91 FVLTTPLYYVNAPPHMGSAYTTIAADAIARFQRLLGKKVIFITGTDEHGEKIXXXXXDGG 150
F +TTP+YYVN PH+G AYTTIAAD IAR+ RL V F+TGTDEHG KI + G
Sbjct: 7 FYVTTPIYYVNDVPHLGHAYTTIAADTIARYYRLRDYDVFFLTGTDEHGLKIQKKAEELG 66
Query: 151 SSPSEHCDVVSQAYKTLWKDLDIAYDKFIRTTEPKHEAIVKEFYSSVLANGDIYKADYEG 210
SP E D ++ +K LW+ L I Y KFIRTT+P H V++ + GDIY +YEG
Sbjct: 67 ISPKELVDRNAERFKKLWEFLKIEYTKFIRTTDPYHVKFVQKVFEECYKRGDIYLGEYEG 126
Query: 211 LYCVNCEEYKDEKELLENQCCPIHLKPCVARKEDNYFFALSKYQKLLEDTLTENPDFVQP 270
YCV CEE+K E EL E+ CPIH K C KE +YFF LSKYQ L + +NP+F+QP
Sbjct: 127 WYCVGCEEFKSEAELAEDHTCPIHQKKCEYIKEPSYFFRLSKYQDKLLELYEKNPEFIQP 186
Query: 271 SFRLNEVQGWIKSGLRDFSIS--RASVDWGIPVPNDNKQTIYVWFDALLGYISALSEDRD 328
+R NE+ ++K GL+D S++ R+ V WGIPVP D + TIYVWFDAL YISAL ED+
Sbjct: 187 DYRRNEIISFVKQGLKDLSVTRPRSRVKWGIPVPFDPEHTIYVWFDALFNYISAL-EDK- 244
Query: 329 QPSLRTAVSSGWPASL 344
V WPA L
Sbjct: 245 -------VEIYWPADL 253
>pdb|1A8H|A Chain A, Methionyl-Trna Synthetase From Thermus Thermophilus
Length = 500
Score = 244 bits (623), Expect = 5e-65, Method: Compositional matrix adjust.
Identities = 118/235 (50%), Positives = 149/235 (63%), Gaps = 3/235 (1%)
Query: 91 FVLTTPLYYVNAPPHMGSAYTTIAADAIARFQRLLGKKVIFITGTDEHGEKIXXXXXDGG 150
F +TTP+YYVNA PH+G AYTT+ AD +AR+ RL G + F+TGTDEHGE + G
Sbjct: 5 FYVTTPIYYVNAEPHLGHAYTTVVADFLARWHRLDGYRTFFLTGTDEHGETVYRAAQAAG 64
Query: 151 SSPSEHCDVVSQAYKTLWKDLDIAYDKFIRTTEPKHEAIVKEFYSSVLANGDIYKADYEG 210
P D VS +K W L IAYD FIRTTE +H+ +V+ V GDIY +YEG
Sbjct: 65 EDPKAFVDRVSGRFKRAWDLLGIAYDDFIRTTEERHKKVVQLVLKKVYEAGDIYYGEYEG 124
Query: 211 LYCVNCEEYKDEKELLENQCCPIHLKPCVARKEDNYFFALSKYQKLLEDTLTENPDFVQP 270
LYCV+CE + EKEL+E CPIH +P RKE NYFF + KY+ L++ + ENPD ++P
Sbjct: 125 LYCVSCERFYTEKELVEG-LCPIHGRPVERRKEGNYFFRMEKYRPWLQEYIQENPDLIRP 183
Query: 271 SFRLNEVQGWIKSGLRDFSISR--ASVDWGIPVPNDNKQTIYVWFDALLGYISAL 323
NEV + + D SISR + V WGIP+P D YVWFDALL Y+SAL
Sbjct: 184 EGYRNEVLAMLAEPIGDLSISRPKSRVPWGIPLPWDENHVTYVWFDALLNYVSAL 238
>pdb|1WOY|A Chain A, Crystal Structure Of Methionyl Trna Synthetase Y225f
Mutant From Thermus Thermophilus
pdb|2D5B|A Chain A, Crystal Structure Of Thermus Thermophilus Methionyl Trna
Synthetase Y225f Mutant Obtained In The Presence Of
Peg6000
Length = 500
Score = 243 bits (620), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 117/235 (49%), Positives = 149/235 (63%), Gaps = 3/235 (1%)
Query: 91 FVLTTPLYYVNAPPHMGSAYTTIAADAIARFQRLLGKKVIFITGTDEHGEKIXXXXXDGG 150
F +TTP+YYVNA PH+G AYTT+ AD +AR+ RL G + F+TGTDEHGE + G
Sbjct: 5 FYVTTPIYYVNAEPHLGHAYTTVVADFLARWHRLDGYRTFFLTGTDEHGETVYRAAQAAG 64
Query: 151 SSPSEHCDVVSQAYKTLWKDLDIAYDKFIRTTEPKHEAIVKEFYSSVLANGDIYKADYEG 210
P D VS +K W L IAYD FIRTTE +H+ +V+ V GDIY +YEG
Sbjct: 65 EDPKAFVDRVSGRFKRAWDLLGIAYDDFIRTTEERHKKVVQLVLKKVYEAGDIYYGEYEG 124
Query: 211 LYCVNCEEYKDEKELLENQCCPIHLKPCVARKEDNYFFALSKYQKLLEDTLTENPDFVQP 270
LYCV+CE + EKEL+E CPIH +P RKE NYFF + KY+ L++ + ENPD ++P
Sbjct: 125 LYCVSCERFYTEKELVEG-LCPIHGRPVERRKEGNYFFRMEKYRPWLQEYIQENPDLIRP 183
Query: 271 SFRLNEVQGWIKSGLRDFSISR--ASVDWGIPVPNDNKQTIYVWFDALLGYISAL 323
NEV + + D SISR + V WGIP+P D +VWFDALL Y+SAL
Sbjct: 184 EGYRNEVLAMLAEPIGDLSISRPKSRVPWGIPLPWDENHVTFVWFDALLNYVSAL 238
>pdb|2D54|A Chain A, Crystal Structure Of Methionyl Trna Synthetase Y225a
Mutant From Thermus Thermophilus
Length = 502
Score = 241 bits (615), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 117/235 (49%), Positives = 148/235 (62%), Gaps = 3/235 (1%)
Query: 91 FVLTTPLYYVNAPPHMGSAYTTIAADAIARFQRLLGKKVIFITGTDEHGEKIXXXXXDGG 150
F +TTP+YYVNA PH+G AYTT+ AD +AR+ RL G + F+TGTDEHGE + G
Sbjct: 5 FYVTTPIYYVNAEPHLGHAYTTVVADFLARWHRLDGYRTFFLTGTDEHGETVYRAAQAAG 64
Query: 151 SSPSEHCDVVSQAYKTLWKDLDIAYDKFIRTTEPKHEAIVKEFYSSVLANGDIYKADYEG 210
P D VS +K W L IAYD FIRTTE +H+ +V+ V GDIY +YEG
Sbjct: 65 EDPKAFVDRVSGRFKRAWDLLGIAYDDFIRTTEERHKKVVQLVLKKVYEAGDIYYGEYEG 124
Query: 211 LYCVNCEEYKDEKELLENQCCPIHLKPCVARKEDNYFFALSKYQKLLEDTLTENPDFVQP 270
LYCV+CE + EKEL+E CPIH +P RKE NYFF + KY+ L++ + ENPD ++P
Sbjct: 125 LYCVSCERFYTEKELVEG-LCPIHGRPVERRKEGNYFFRMEKYRPWLQEYIQENPDLIRP 183
Query: 271 SFRLNEVQGWIKSGLRDFSISR--ASVDWGIPVPNDNKQTIYVWFDALLGYISAL 323
NEV + + D SISR + V WGIP+P D VWFDALL Y+SAL
Sbjct: 184 EGYRNEVLAMLAEPIGDLSISRPKSRVPWGIPLPWDENHVTAVWFDALLNYVSAL 238
>pdb|4DLP|A Chain A, Crystal Structure Of Methionyl-Trna Synthetase Metrs From
Brucella Melitensis Bound To Selenomethionine
pdb|4DLP|B Chain B, Crystal Structure Of Methionyl-Trna Synthetase Metrs From
Brucella Melitensis Bound To Selenomethionine
pdb|4DLP|C Chain C, Crystal Structure Of Methionyl-Trna Synthetase Metrs From
Brucella Melitensis Bound To Selenomethionine
Length = 536
Score = 202 bits (514), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 105/251 (41%), Positives = 146/251 (58%), Gaps = 5/251 (1%)
Query: 78 TNTDKSGTEPADPFVLTTPLYYVNAPPHMGSAYTTIAADAIARFQRLLGKKVIFITGTDE 137
T G+ + + +TT + Y N PH+G AY IA DA+ARFQRL G V F+TGTDE
Sbjct: 14 AQTQGPGSMSREKYYITTAIAYPNGKPHIGHAYELIATDAMARFQRLNGMDVYFLTGTDE 73
Query: 138 HGEKIXXXXXDGGSSPSEHCDVVSQAYKTLWKDLDIAYDKFIRTTEPKHEAIVKEFYSSV 197
HG K+ G +P + D + A++ + + L+ + D +IRT+E +H + + ++
Sbjct: 74 HGIKMLQSARKEGITPRDLADRNTSAFRRMAEVLNSSNDDYIRTSEERHYKASQAIWQAM 133
Query: 198 LANGDIYKADYEGLYCVNCEEYKDEKELLENQCCPIHLKPCVA----RKEDNYFFALSKY 253
+ANGDIYK Y G Y V E Y E+E E + + P +E++YFF LS Y
Sbjct: 134 VANGDIYKGGYAGWYSVRDEAYYGEEE-TEVRADGVRYGPQGTPVEWVEEESYFFRLSAY 192
Query: 254 QKLLEDTLTENPDFVQPSFRLNEVQGWIKSGLRDFSISRASVDWGIPVPNDNKQTIYVWF 313
Q L D NP F+ P+ R NE+ ++KSGL+D SISR + DWGIPVP D K +YVW
Sbjct: 193 QDKLLDLYENNPGFIMPAERRNEIVSFVKSGLKDLSISRTTFDWGIPVPGDEKHVMYVWV 252
Query: 314 DALLGYISALS 324
DAL YI+AL
Sbjct: 253 DALTNYITALG 263
>pdb|3KFL|A Chain A, Leishmania Major Methionyl-Trna Synthetase In Complex With
Methionyladenylate And Pyrophosphate
Length = 564
Score = 177 bits (449), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 89/243 (36%), Positives = 138/243 (56%), Gaps = 11/243 (4%)
Query: 91 FVLTTPLYYVNAPPHMGSAYTTIAADAIARFQRLLGKKVIFITGTDEHGEKIXXXXXDGG 150
F TTP+YYVNA PH+G Y+T+ D + R+ R+ G++V +TGTDEHG+K+ G
Sbjct: 28 FFATTPIYYVNASPHIGHVYSTLIVDVLGRYHRVKGEEVFVMTGTDEHGQKVAEAAAKQG 87
Query: 151 SSPSEHCDVVSQAYKTLWKDLDIAYDKFIRTTEPKHEAIVKEFYSSVLANGDIYKADYEG 210
SP + VS +K +++++ + FIRTT P HE +V++ + + A GDIY YEG
Sbjct: 88 VSPMDFTTSVSSEFKQCFQEMNYDMNYFIRTTNPTHEKLVQDIWKKLAAKGDIYLGKYEG 147
Query: 211 LYCVNCEEYKDEKELL-----ENQCCPIHLKP---CVARKEDNYFFALSKYQKLLEDTLT 262
Y V+ E + + + + + C + L+ +E+NY F LS +++ L
Sbjct: 148 WYSVSDESFLTAQNVADGVDRDGKPCKVSLESGHVVTWVEEENYMFRLSAFRERLLKYFH 207
Query: 263 ENPDFVQPSFRLNEVQGWIKSGLRDFSISR---ASVDWGIPVPNDNKQTIYVWFDALLGY 319
++P+ + P FR EV ++ GL D SISR + ++W IPVP D + IYVW DAL Y
Sbjct: 208 DHPNCIVPEFRRREVIKTVEKGLFDLSISRKRESVMNWSIPVPGDERHCIYVWLDALFNY 267
Query: 320 ISA 322
+
Sbjct: 268 YTG 270
>pdb|2X1L|A Chain A, Crystal Structure Of Mycobacterium Smegmatis
Methionyl-Trna Synthetase In Complex With Methionine And
Adenosine
pdb|2X1L|B Chain B, Crystal Structure Of Mycobacterium Smegmatis
Methionyl-Trna Synthetase In Complex With Methionine And
Adenosine
pdb|2X1L|C Chain C, Crystal Structure Of Mycobacterium Smegmatis
Methionyl-Trna Synthetase In Complex With Methionine And
Adenosine
pdb|2X1M|A Chain A, Crystal Structure Of Mycobacterium Smegmatis
Methionyl-Trna Synthetase In Complex With Methionine
Length = 524
Score = 177 bits (449), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 97/262 (37%), Positives = 139/262 (53%), Gaps = 9/262 (3%)
Query: 88 ADPFVLTTPLYYVNAPPHMGSAYTTIAADAIARFQRLLGKKVIFITGTDEHGEKIXXXXX 147
++PF +TT + Y N PH+G AY IA DAIARF+RL G V ++TGTD HG+K+
Sbjct: 11 SEPFYITTAIAYPNGVPHIGHAYEYIATDAIARFKRLDGYDVRYLTGTDVHGQKMAETAA 70
Query: 148 DGGSSPSEHCDVVSQAYKTLWKDLDIAYDKFIRTTEPKHEAIVKEFYSSVLANGDIYKAD 207
G +E S ++ L + L+I++D+FIRT++ H K + + GDIY
Sbjct: 71 KEGIPAAELARRNSDVFQRLQEKLNISFDRFIRTSDADHYEASKAIWKRMADAGDIYLDA 130
Query: 208 YEGLYCVNCEEYKDEKELLEN----QCCPIHLKPCVARKEDNYFFALSKYQKLLEDTLTE 263
Y+G Y + E + E E E + P +E YFF LS Y L E
Sbjct: 131 YKGWYSIRDERFFTENETTEQPDGTRIATETGAPVTWTEEQTYFFRLSAYTDRLLALYEE 190
Query: 264 NPDFVQPSFRLNEVQGWIKSGLRDFSISRASVDWGIPVPNDNKQTIYVWFDALLGYISAL 323
+P+F+ P R NE+ ++ GL+D SISR + DWG+PVP+ +YVW DAL Y++ +
Sbjct: 191 HPEFIGPDARRNEIVSFVSGGLKDLSISRTTFDWGVPVPDHPDHVMYVWVDALTNYLTGV 250
Query: 324 S-EDRDQPSLRTAVSSGWPASL 344
D + S R WPA L
Sbjct: 251 GFPDTESESFRRY----WPADL 268
>pdb|3TUN|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1356
pdb|3TUN|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1356
pdb|4EG4|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1289
pdb|4EG4|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1289
pdb|4EG7|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1331
pdb|4EG7|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1331
pdb|4EGA|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1320
pdb|4EGA|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1320
pdb|3U1Z|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1433
pdb|3U1Z|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1433
Length = 542
Score = 172 bits (436), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 87/243 (35%), Positives = 135/243 (55%), Gaps = 11/243 (4%)
Query: 91 FVLTTPLYYVNAPPHMGSAYTTIAADAIARFQRLLGKKVIFITGTDEHGEKIXXXXXDGG 150
F +T+P+YYVNA PH+G Y+T+ D I R+ R+ G++V +TGTDEHG+K+
Sbjct: 11 FFVTSPIYYVNAAPHIGHVYSTLITDVIGRYHRVKGERVFALTGTDEHGQKVAEAAKQKQ 70
Query: 151 SSPSEHCDVVSQAYKTLWKDLDIAYDKFIRTTEPKHEAIVKEFYSSVLANGDIYKADYEG 210
SP + V+ +K ++ +D + D FIRTT +H+A+VKE ++ + GDIY YEG
Sbjct: 71 VSPYDFTTAVAGEFKKXFEQMDYSIDYFIRTTNEQHKAVVKELWTKLEQKGDIYLGRYEG 130
Query: 211 LYCVNCEEYKDEKELL-----ENQCCPIHLKP---CVARKEDNYFFALSKYQKLLEDTLT 262
Y ++ E + + + + C + L+ E+NY F LS +++ L +
Sbjct: 131 WYSISDESFLTPQNITDGVDKDGNPCKVSLESGHVVTWVSEENYMFRLSAFRERLLEWYH 190
Query: 263 ENPDFVQPSFRLNEVQGWIKSGLRDFSISRASV---DWGIPVPNDNKQTIYVWFDALLGY 319
NP + P FR EV ++ GL D S+SRA +W IPVP + +YVW DAL Y
Sbjct: 191 ANPGCIVPEFRRREVIRAVEKGLPDLSVSRARATLHNWAIPVPGNPDHXVYVWLDALTNY 250
Query: 320 ISA 322
++
Sbjct: 251 LTG 253
>pdb|4EG1|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Substrate Methionine
pdb|4EG1|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Substrate Methionine
pdb|4EG3|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Product Methionyl-Adenylate
pdb|4EG3|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Product Methionyl-Adenylate
pdb|4EG6|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1325
pdb|4EG6|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1325
pdb|4EG8|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Compound Chem 89
pdb|4EG8|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Compound Chem 89
pdb|3U1E|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1387
pdb|3U1E|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1387
pdb|3U1F|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1392
pdb|3U1F|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1392
pdb|3U1G|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1415
pdb|3U1G|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1415
pdb|3U20|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1444
pdb|3U20|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1444
Length = 542
Score = 172 bits (435), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 87/243 (35%), Positives = 135/243 (55%), Gaps = 11/243 (4%)
Query: 91 FVLTTPLYYVNAPPHMGSAYTTIAADAIARFQRLLGKKVIFITGTDEHGEKIXXXXXDGG 150
F +T+P+YYVNA PH+G Y+T+ D I R+ R+ G++V +TGTDEHG+K+
Sbjct: 11 FFVTSPIYYVNAAPHIGHVYSTLITDVIGRYHRVKGERVFALTGTDEHGQKVAEAAKQKQ 70
Query: 151 SSPSEHCDVVSQAYKTLWKDLDIAYDKFIRTTEPKHEAIVKEFYSSVLANGDIYKADYEG 210
SP + V+ +K ++ +D + D FIRTT +H+A+VKE ++ + GDIY YEG
Sbjct: 71 VSPYDFTTAVAGEFKKCFEQMDYSIDYFIRTTNEQHKAVVKELWTKLEQKGDIYLGRYEG 130
Query: 211 LYCVNCEEYKDEKELL-----ENQCCPIHLKP---CVARKEDNYFFALSKYQKLLEDTLT 262
Y ++ E + + + + C + L+ E+NY F LS +++ L +
Sbjct: 131 WYSISDESFLTPQNITDGVDKDGNPCKVSLESGHVVTWVSEENYMFRLSAFRERLLEWYH 190
Query: 263 ENPDFVQPSFRLNEVQGWIKSGLRDFSISRASV---DWGIPVPNDNKQTIYVWFDALLGY 319
NP + P FR EV ++ GL D S+SRA +W IPVP + +YVW DAL Y
Sbjct: 191 ANPGCIVPEFRRREVIRAVEKGLPDLSVSRARATLHNWAIPVPGNPDHXVYVWLDALTNY 250
Query: 320 ISA 322
++
Sbjct: 251 LTG 253
>pdb|4EG5|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1312
pdb|4EG5|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1312
Length = 542
Score = 171 bits (434), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 87/243 (35%), Positives = 135/243 (55%), Gaps = 11/243 (4%)
Query: 91 FVLTTPLYYVNAPPHMGSAYTTIAADAIARFQRLLGKKVIFITGTDEHGEKIXXXXXDGG 150
F +T+P+YYVNA PH+G Y+T+ D I R+ R+ G++V +TGTDEHG+K+
Sbjct: 11 FFVTSPIYYVNAAPHIGHVYSTLITDVIGRYHRVKGERVFALTGTDEHGQKVAEAAKQKQ 70
Query: 151 SSPSEHCDVVSQAYKTLWKDLDIAYDKFIRTTEPKHEAIVKEFYSSVLANGDIYKADYEG 210
SP + V+ +K ++ +D + D FIRTT +H+A+VKE ++ + GDIY YEG
Sbjct: 71 VSPYDFTTAVAGEFKKCFEQMDYSIDYFIRTTNEQHKAVVKELWTKLEQKGDIYLGRYEG 130
Query: 211 LYCVNCEEYKDEKELL-----ENQCCPIHLKP---CVARKEDNYFFALSKYQKLLEDTLT 262
Y ++ E + + + + C + L+ E+NY F LS +++ L +
Sbjct: 131 WYSISDESFLTPQNITDGVDKDGNPCKVSLESGHVVTWVSEENYMFRLSAFRERLLEWYH 190
Query: 263 ENPDFVQPSFRLNEVQGWIKSGLRDFSISRASV---DWGIPVPNDNKQTIYVWFDALLGY 319
NP + P FR EV ++ GL D S+SRA +W IPVP + +YVW DAL Y
Sbjct: 191 ANPGCIVPEFRRREVIRAVEKGLPDLSVSRARATLHNWAIPVPGNPDHCVYVWLDALTNY 250
Query: 320 ISA 322
++
Sbjct: 251 LTG 253
>pdb|1RQG|A Chain A, Methionyl-Trna Synthetase From Pyrococcus Abyssi
Length = 722
Score = 118 bits (296), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 82/268 (30%), Positives = 129/268 (48%), Gaps = 37/268 (13%)
Query: 91 FVLTTPLYYVNAPPHMGS-AYTTIAADAIARFQRLLGKKVIFITGTDEHGEKIXXXXXDG 149
+++T+ L Y N P H G A + AD R+ RL G+ V+FI GTDEHG I
Sbjct: 4 YMVTSALPYANGPIHAGHLAGAYLPADIFVRYLRLKGEDVVFICGTDEHGTPISFRALKE 63
Query: 150 GSSPSEHCDVVSQAYKTLWKDLDIAYDKFIRTTEPKHEAIVKEFYSSVLANGDIYKADYE 209
G SP E D + K ++ I++D F RT P H + +EF+ NG + K +
Sbjct: 64 GRSPREIVDEFHEQIKITFQRAKISFDFFGRTELPIHYKLSQEFFLKAYENGHLVKKVTK 123
Query: 210 GLYCVNCEEY---------------KDEK-------------ELLENQCCPIHLKPCVAR 241
YC + + + +D+K E+L N C I +P R
Sbjct: 124 QAYCEHDKMFLPDRFVIGTCPYCGAEDQKGDQCEVCGRPLTPEILINPRCAICGRPISFR 183
Query: 242 KEDNYFFALSKYQKLLEDTLTENPDFVQPSFRLNEVQGWIKSGLRDFSISRASVDWGIPV 301
+Y+ + + + L+ + + P +P+ + N V WI+ GL + +I+R ++WGIPV
Sbjct: 184 DSAHYYIKMQDFAERLKRWIEKQP--WKPNVK-NMVLSWIEEGLEERAITR-DLNWGIPV 239
Query: 302 PNDNK----QTIYVWFDALLGYISALSE 325
P D + + +YVWF+A +GYIS E
Sbjct: 240 PLDEEDMKGKVLYVWFEAPIGYISITIE 267
>pdb|1P7P|A Chain A, Methionyl-trna Synthetase From Escherichia Coli Complexed
With Methionine Phosphonate
pdb|1PFU|A Chain A, Methionyl-Trna Synthetase From Escherichia Coli Complexed
With Methionine Phosphinate
pdb|1PFV|A Chain A, Methionyl-Trna Synthetase From Escherichia Coli Complexed
With Difluoromethionine
pdb|1PFW|A Chain A, Methionyl-Trna Synthetase From Escherichia Coli Complexed
With Trifluoromethionine
pdb|1PFY|A Chain A, Methionyl-Trna Synthetase From Escherichia Coli Complexed
With Methionyl Sulphamoyl Adenosine
pdb|1PG0|A Chain A, Methionyl-Trna Synthetase From Escherichia Coli Complexed
With Methioninyl Adenylate
pdb|1PG2|A Chain A, Methionyl-Trna Synthetase From Escherichia Coli Complexed
With Methionine And Adenosine
Length = 551
Score = 99.4 bits (246), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 71/267 (26%), Positives = 115/267 (43%), Gaps = 31/267 (11%)
Query: 85 TEPADPFVLTTPLYYVNAPPHMGSAYTTIAADAIARFQRLLGKKVIFITGTDEHGEKIXX 144
T+ A ++T L Y N H+G I AD R+QR+ G +V FI D HG I
Sbjct: 1 TQVAKKILVTCALPYANGSIHLGHMLEHIQADVWVRYQRMRGHEVNFICADDAHGTPIML 60
Query: 145 XXXDGGSSPSEHCDVVSQAYKTLWKDLDIAYDKFIRTTEPKHEAIVKEFYSSVLANGDIY 204
G +P + +SQ ++T + +I+YD + T ++ + + YS + NG I
Sbjct: 61 KAQQLGITPEQMIGEMSQEHQTDFAGFNISYDNYHSTHSEENRQLSELIYSRLKENGFIK 120
Query: 205 KADYEGLY----------------CVNC---EEYKDEKELLENQCCPIHL---------K 236
LY C C ++Y D E+ P L
Sbjct: 121 NRTISQLYDPEKGMFLPDRFVKGTCPKCKSPDQYGDNCEVCGATYSPTELIEPKSVVSGA 180
Query: 237 PCVARKEDNYFFALSKYQKLLEDTLTENPDFVQPSFRLNEVQGWIKSGLRDFSISRASVD 296
V R +++FF L + ++L+ Q + N++Q W +SGL+ + ISR +
Sbjct: 181 TPVMRDSEHFFFDLPSFSEMLQAWTRSGALQEQVA---NKMQEWFESGLQQWDISRDAPY 237
Query: 297 WGIPVPNDNKQTIYVWFDALLGYISAL 323
+G +PN + YVW DA +GY+ +
Sbjct: 238 FGFEIPNAPGKYFYVWLDAPIGYMGSF 264
>pdb|1QQT|A Chain A, Methionyl-Trna Synthetase From Escherichia Coli
Length = 551
Score = 99.4 bits (246), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 71/267 (26%), Positives = 115/267 (43%), Gaps = 31/267 (11%)
Query: 85 TEPADPFVLTTPLYYVNAPPHMGSAYTTIAADAIARFQRLLGKKVIFITGTDEHGEKIXX 144
T+ A ++T L Y N H+G I AD R+QR+ G +V FI D HG I
Sbjct: 1 TQVAKKILVTCALPYANGSIHLGHMLEHIQADVWVRYQRMRGHEVNFICADDAHGTPIML 60
Query: 145 XXXDGGSSPSEHCDVVSQAYKTLWKDLDIAYDKFIRTTEPKHEAIVKEFYSSVLANGDIY 204
G +P + +SQ ++T + +I+YD + T ++ + + YS + NG I
Sbjct: 61 KAQQLGITPEQMIGEMSQEHQTDFAGFNISYDNYHSTHSEENRQLSELIYSRLKENGFIK 120
Query: 205 KADYEGLY----------------CVNC---EEYKDEKELLENQCCPIHL---------K 236
LY C C ++Y D E+ P L
Sbjct: 121 NRTISQLYDPEKGMFLPDRFVKGTCPKCKSPDQYGDNCEVCGATYSPTELIEPKSVVSGA 180
Query: 237 PCVARKEDNYFFALSKYQKLLEDTLTENPDFVQPSFRLNEVQGWIKSGLRDFSISRASVD 296
V R +++FF L + ++L+ Q + N++Q W +SGL+ + ISR +
Sbjct: 181 TPVMRDSEHFFFDLPSFSEMLQAWTRSGALQEQVA---NKMQEWFESGLQQWDISRDAPY 237
Query: 297 WGIPVPNDNKQTIYVWFDALLGYISAL 323
+G +PN + YVW DA +GY+ +
Sbjct: 238 FGFEIPNAPGKYFYVWLDAPIGYMGSF 264
>pdb|3H9C|A Chain A, Structure Of Methionyl-Trna Synthetase: Crystal Form 2
Length = 547
Score = 99.4 bits (246), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 71/267 (26%), Positives = 115/267 (43%), Gaps = 31/267 (11%)
Query: 85 TEPADPFVLTTPLYYVNAPPHMGSAYTTIAADAIARFQRLLGKKVIFITGTDEHGEKIXX 144
T+ A ++T L Y N H+G I AD R+QR+ G +V FI D HG I
Sbjct: 1 TQVAKKILVTCALPYANGSIHLGHMLEHIQADVWVRYQRMRGHEVNFICADDAHGTPIML 60
Query: 145 XXXDGGSSPSEHCDVVSQAYKTLWKDLDIAYDKFIRTTEPKHEAIVKEFYSSVLANGDIY 204
G +P + +SQ ++T + +I+YD + T ++ + + YS + NG I
Sbjct: 61 KAQQLGITPEQMIGEMSQEHQTDFAGFNISYDNYHSTHSEENRQLSELIYSRLKENGFIK 120
Query: 205 KADYEGLY----------------CVNC---EEYKDEKELLENQCCPIHL---------K 236
LY C C ++Y D E+ P L
Sbjct: 121 NRTISQLYDPEKGMFLPDRFVKGTCPKCKSPDQYGDNCEVCGATYSPTELIEPKSVVSGA 180
Query: 237 PCVARKEDNYFFALSKYQKLLEDTLTENPDFVQPSFRLNEVQGWIKSGLRDFSISRASVD 296
V R +++FF L + ++L+ Q + N++Q W +SGL+ + ISR +
Sbjct: 181 TPVMRDSEHFFFDLPSFSEMLQAWTRSGALQEQVA---NKMQEWFESGLQQWDISRDAPY 237
Query: 297 WGIPVPNDNKQTIYVWFDALLGYISAL 323
+G +PN + YVW DA +GY+ +
Sbjct: 238 FGFEIPNAPGKYFYVWLDAPIGYMGSF 264
>pdb|1F4L|A Chain A, Crystal Structure Of The E.Coli Methionyl-Trna Synthetase
Complexed With Methionine
Length = 551
Score = 99.4 bits (246), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 71/267 (26%), Positives = 115/267 (43%), Gaps = 31/267 (11%)
Query: 85 TEPADPFVLTTPLYYVNAPPHMGSAYTTIAADAIARFQRLLGKKVIFITGTDEHGEKIXX 144
T+ A ++T L Y N H+G I AD R+QR+ G +V FI D HG I
Sbjct: 2 TQVAKKILVTCALPYANGSIHLGHMLEHIQADVWVRYQRMRGHEVNFICADDAHGTPIML 61
Query: 145 XXXDGGSSPSEHCDVVSQAYKTLWKDLDIAYDKFIRTTEPKHEAIVKEFYSSVLANGDIY 204
G +P + +SQ ++T + +I+YD + T ++ + + YS + NG I
Sbjct: 62 KAQQLGITPEQMIGEMSQEHQTDFAGFNISYDNYHSTHSEENRQLSELIYSRLKENGFIK 121
Query: 205 KADYEGLY----------------CVNC---EEYKDEKELLENQCCPIHL---------K 236
LY C C ++Y D E+ P L
Sbjct: 122 NRTISQLYDPEKGMFLPDRFVKGTCPKCKSPDQYGDNCEVCGATYSPTELIEPKSVVSGA 181
Query: 237 PCVARKEDNYFFALSKYQKLLEDTLTENPDFVQPSFRLNEVQGWIKSGLRDFSISRASVD 296
V R +++FF L + ++L+ Q + N++Q W +SGL+ + ISR +
Sbjct: 182 TPVMRDSEHFFFDLPSFSEMLQAWTRSGALQEQVA---NKMQEWFESGLQQWDISRDAPY 238
Query: 297 WGIPVPNDNKQTIYVWFDALLGYISAL 323
+G +PN + YVW DA +GY+ +
Sbjct: 239 FGFEIPNAPGKYFYVWLDAPIGYMGSF 265
>pdb|3H97|A Chain A, Structure Of A Mutant Methionyl-trna Synthetase With
Modified Specificity
pdb|3H99|A Chain A, Structure Of A Mutant Methionyl-Trna Synthetase With
Modified Specificity Complexed With Methionine
pdb|3H9B|A Chain A, Structure Of A Mutant Methionyl-Trna Synthetase With
Modified Specificity Complexed With Azidonorleucine
Length = 560
Score = 94.4 bits (233), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 70/269 (26%), Positives = 114/269 (42%), Gaps = 31/269 (11%)
Query: 83 SGTEPADPFVLTTPLYYVNAPPHMGSAYTTIAADAIARFQRLLGKKVIFITGTDEHGEKI 142
S T+ A ++T Y N H+G I AD R+QR+ G +V FI D HG I
Sbjct: 12 SMTQVAKKILVTCASPYANGSIHLGHMLEHIQADVWVRYQRMRGHEVNFICADDAHGTPI 71
Query: 143 XXXXXDGGSSPSEHCDVVSQAYKTLWKDLDIAYDKFIRTTEPKHEAIVKEFYSSVLANGD 202
G +P + +SQ ++T + +I+YD + T ++ + + YS + NG
Sbjct: 72 MLKAQQLGITPEQMIGEMSQEHQTDFAGFNISYDNYHSTHSEENRQLSELIYSRLKENGF 131
Query: 203 IYKADYEGLY----------------CVNC---EEYKDEKELLENQCCPIHL-------- 235
I LY C C ++Y D E+ P L
Sbjct: 132 IKNRTISQLYDPEKGMFLPDRFVKGTCPKCKSPDQYGDNCEVCGATYSPTELIEPKSVVS 191
Query: 236 -KPCVARKEDNYFFALSKYQKLLEDTLTENPDFVQPSFRLNEVQGWIKSGLRDFSISRAS 294
V R +++FF L + ++L+ Q + N++Q W +SGL+ + ISR +
Sbjct: 192 GATPVMRDSEHFFFDLPSFSEMLQAWTRSGALQEQVA---NKMQEWFESGLQQWDISRDA 248
Query: 295 VDWGIPVPNDNKQTIYVWFDALLGYISAL 323
+G +PN + YVW DA +G + +
Sbjct: 249 PYFGFEIPNAPGKYFYVWLDAPIGLMGSF 277
>pdb|1OBH|A Chain A, Leucyl-Trna Synthetase From Thermus Thermophilus Complexed
With A Pre-Transfer Editing Substrate Analogue In Both
Synthetic Active Site And Editing Site
pdb|2BTE|A Chain A, Thermus Thermophilus Leucyl-Trna Synthetase Complexed With
With A Trnaleu Transcript In The Post-Editing
Conformation And A Post-Transfer Editing Substrate
Analogue
pdb|2BTE|D Chain D, Thermus Thermophilus Leucyl-Trna Synthetase Complexed With
With A Trnaleu Transcript In The Post-Editing
Conformation And A Post-Transfer Editing Substrate
Analogue
pdb|2BYT|A Chain A, Thermus Thermophilus Leucyl-Trna Synthetase Complexed With
A Trnaleu Transcript In The Post-Editing Conformation
pdb|2BYT|D Chain D, Thermus Thermophilus Leucyl-Trna Synthetase Complexed With
A Trnaleu Transcript In The Post-Editing Conformation
pdb|1H3N|A Chain A, Leucyl-Trna Synthetase From Thermus Thermophilus Complexed
With A Sulphamoyl Analogue Of Leucyl-Adenylate
pdb|1OBC|A Chain A, Leucyl-Trna Synthetase From Thermus Thermophilus Complexed
With A Post-Transfer Editing Substrate Analogue
pdb|2V0G|A Chain A, Leucyl-Trna Synthetase From Thermus Thermophilus Complexed
With A Trna(Leu) Transcript With 5-Fluoro-1,3-Dihydro-1-
Hydroxy-2,1-Benzoxaborole (An2690) Forming An Adduct To
The Ribose Of Adenosine-76 In The Enzyme Editing Site.
pdb|2V0G|D Chain D, Leucyl-Trna Synthetase From Thermus Thermophilus Complexed
With A Trna(Leu) Transcript With 5-Fluoro-1,3-Dihydro-1-
Hydroxy-2,1-Benzoxaborole (An2690) Forming An Adduct To
The Ribose Of Adenosine-76 In The Enzyme Editing Site
Length = 878
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 37/159 (23%), Positives = 72/159 (45%), Gaps = 5/159 (3%)
Query: 105 HMGSAYTTIAADAIARFQRLLGKKVIFITGTDEHGEKIXXXXXDGGSSPSEHCDV-VSQA 163
HMG D +ARF+R+ G +V+ G D G G P + + QA
Sbjct: 49 HMGHLKNYTMGDVLARFRRMQGYEVLHPMGWDAFGLPAENAALKFGVHPKDWTYANIRQA 108
Query: 164 YKTLWKDLDIAY--DKFIRTTEPKHEAIVKEFYSSVLANGDIYKADYEGLYCVNCEEYKD 221
++L + + I Y D+ + T EP++ + + + G Y+A +C C+
Sbjct: 109 KESL-RLMGILYDWDREVTTCEPEYYRWNQWIFLKMWEKGLAYRAKGLVNWCPKCQTVLA 167
Query: 222 EKELLENQCCPIHLKPCVARKEDNYFFALSKY-QKLLED 259
++++E +C P R+ + ++ ++ Y ++LL+D
Sbjct: 168 NEQVVEGRCWRHEDTPVEKRELEQWYLRITAYAERLLKD 206
>pdb|2V0C|A Chain A, Leucyl-Trna Synthetase From Thermus Thermophilus Complexed
With A Sulphamoyl Analogue Of Leucyl-Adenylate In The
Synthetic Site And An Adduct Of Amp With 5-Fluoro-1,3-
Dihydro-1-Hydroxy-2,1-Benzoxaborole (An2690) In The
Editing Site
Length = 878
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 37/159 (23%), Positives = 72/159 (45%), Gaps = 5/159 (3%)
Query: 105 HMGSAYTTIAADAIARFQRLLGKKVIFITGTDEHGEKIXXXXXDGGSSPSEHCDV-VSQA 163
HMG D +ARF+R+ G +V+ G D G G P + + QA
Sbjct: 49 HMGHLKNYTMGDVLARFRRMQGYEVLHPMGWDAFGLPAENAALKFGVHPKDWTYANIRQA 108
Query: 164 YKTLWKDLDIAY--DKFIRTTEPKHEAIVKEFYSSVLANGDIYKADYEGLYCVNCEEYKD 221
++L + + I Y D+ + T EP++ + + + G Y+A +C C+
Sbjct: 109 KESL-RLMGILYDWDREVTTCEPEYYRWNQWIFLKMWEKGLAYRAKGLVNWCPKCQTVLA 167
Query: 222 EKELLENQCCPIHLKPCVARKEDNYFFALSKY-QKLLED 259
++++E +C P R+ + ++ ++ Y ++LL+D
Sbjct: 168 NEQVVEGRCWRHEDTPVEKRELEQWYLRITAYAERLLKD 206
>pdb|4AQ7|A Chain A, Ternary Complex Of E. Coli Leucyl-Trna Synthetase,
Trna(Leu) And Leucyl-Adenylate Analogue In The
Aminoacylation Conformation
pdb|4AQ7|D Chain D, Ternary Complex Of E. Coli Leucyl-Trna Synthetase,
Trna(Leu) And Leucyl-Adenylate Analogue In The
Aminoacylation Conformation
pdb|4ARC|A Chain A, Ternary Complex Of E. Coli Leucyl-Trna Synthetase,
Trna(Leu) And Leucine In The Editing Conformation
pdb|4ARI|A Chain A, Ternary Complex Of E. Coli Leucyl-Trna Synthetase,
Trna(Leu) And The Benzoxaborole An2679 In The Editing
Conformation
pdb|4AS1|A Chain A, Ternary Complex Of E. Coli Leucyl-Trna Synthetase,
Trna(Leu) And The Benzoxaborole An2679 In The Editing
Conformation
pdb|3ZGZ|A Chain A, Ternary Complex Of E. Coli Leucyl-trna Synthetase,
Trna(leu) And Toxic Moiety From Agrocin 84 (tm84) In
Aminoacylation- Like Conformation
pdb|3ZGZ|D Chain D, Ternary Complex Of E. Coli Leucyl-trna Synthetase,
Trna(leu) And Toxic Moiety From Agrocin 84 (tm84) In
Aminoacylation- Like Conformation
Length = 880
Score = 48.5 bits (114), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 49/194 (25%), Positives = 81/194 (41%), Gaps = 8/194 (4%)
Query: 86 EPADPFVLTTPLYYVNAPPHMGSAYTTIAADAIARFQRLLGKKVIFITGTDEHGEKIXXX 145
E + + + L Y + HMG D IAR+QR+LGK V+ G D G
Sbjct: 50 ESKEKYYCLSMLPYPSGRLHMGHVRNYTIGDVIARYQRMLGKNVLQPIGWDAFGLPAEGA 109
Query: 146 XXDGGSSPSEHCDVVSQAYKTLWKDLDIAYD--KFIRTTEPKHEAIVKEFYSSVLANGDI 203
++P+ K K L YD + + T P++ ++F++ + G +
Sbjct: 110 AVKNNTAPAPWTYDNIAYMKNQLKMLGFGYDWSRELATCTPEYYRWEQKFFTELYKKGLV 169
Query: 204 YKADYEGLYCVNCEEYKDEKELLENQCCPIHLKPCVARKE-DNYFFALSKY-QKLLE--D 259
YK +C N + +++++ C K V RKE +F ++ Y +LL D
Sbjct: 170 YKKTSAVNWCPNDQTVLANEQVIDGCCWRCDTK--VERKEIPQWFIKITAYADELLNDLD 227
Query: 260 TLTENPDFVQPSFR 273
L PD V+ R
Sbjct: 228 KLDHWPDTVKTMQR 241
>pdb|3ZIU|A Chain A, Crystal Structure Of Mycoplasma Mobile Leucyl-trna
Synthetase With Leu-ams In The Active Site
pdb|3ZIU|B Chain B, Crystal Structure Of Mycoplasma Mobile Leucyl-trna
Synthetase With Leu-ams In The Active Site
Length = 637
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 58/218 (26%), Positives = 92/218 (42%), Gaps = 29/218 (13%)
Query: 105 HMGSAYTTIAADAIARFQRLLGKKVIFITGTDEHGEKIXXXXXDGGSSPSEHCDVVSQAY 164
H+G A D I+R++RL G V+ G D G G P + +
Sbjct: 53 HVGHPEGYTATDIISRYKRLKGFDVLHPIGWDAFGLPAEQYALSSGKHPQPFTLKNIENF 112
Query: 165 KTLWKDLDIAYD--KFIRTTEPKH----EAIVKEFYSSVLANGDIYKADYE---GLYCVN 215
+ K L ++D K + TT+P + + I K+ Y LA +I + D GL V
Sbjct: 113 RRQLKSLGFSFDYEKEVNTTDPSYYRWTQWIFKQIYKKGLA--EIREVDVNWCPGLGTVL 170
Query: 216 CEE---YKDEKELL-ENQCCPIHLKPCVARKEDNYFFALSKY-QKLLED-TLTENPDFVQ 269
E D+ E++ E P++ KP + ++ Y +LLED L + PD ++
Sbjct: 171 ANEEIVENDKGEMVSERGSFPVYKKPM-----KQWVLKITNYADRLLEDLNLLDWPDSLK 225
Query: 270 PSFRLN-----EVQGWIKSGLRDFSISRASVDWGIPVP 302
+ N E+ G I L+D+ +R WG P P
Sbjct: 226 -KLQTNWIGKEEIDGKITYKLQDWIFARQRY-WGEPFP 261
>pdb|1LI5|A Chain A, Crystal Structure Of Cysteinyl-Trna Synthetase
pdb|1LI5|B Chain B, Crystal Structure Of Cysteinyl-Trna Synthetase
pdb|1LI7|A Chain A, Crystal Structure Of Cysteinyl-Trna Synthetase With
Cysteine Substrate Bound
pdb|1LI7|B Chain B, Crystal Structure Of Cysteinyl-Trna Synthetase With
Cysteine Substrate Bound
pdb|1U0B|B Chain B, Crystal Structure Of Cysteinyl-Trna Synthetase Binary
Complex With Trnacys
Length = 461
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 48/106 (45%), Gaps = 7/106 (6%)
Query: 105 HMGSAYTTIAADAIARFQRLLGKKVIFITGTDEHGEKIXXXXXDGGSSPSEHCDVVSQAY 164
H+G T +A D +AR+ R LG K+ ++ + +KI + G S +V +
Sbjct: 37 HIGHGRTFVAFDVVARYLRFLGYKLKYVRNITDIDDKIIKRANENGES---FVAMVDRMI 93
Query: 165 KTLWKDLDIAYDKFIRTTEPK---HEAIVKEFYSSVLANGDIYKAD 207
+ KD D A + EP+ H A + E ++A G Y AD
Sbjct: 94 AEMHKDFD-ALNILRPDMEPRATHHIAEIIELTEQLIAKGHAYVAD 138
>pdb|1GAX|A Chain A, Crystal Structure Of Thermus Thermophilus Valyl-Trna
Synthetase Complexed With Trna(Val) And Valyl-Adenylate
Analogue
pdb|1GAX|B Chain B, Crystal Structure Of Thermus Thermophilus Valyl-Trna
Synthetase Complexed With Trna(Val) And Valyl-Adenylate
Analogue
pdb|1IVS|A Chain A, Crystal Structure Of Thermus Thermophilus Valyl-Trna
Synthetase Complexed With Trna(Val) And Valyl-Adenylate
Analogue
pdb|1IVS|B Chain B, Crystal Structure Of Thermus Thermophilus Valyl-Trna
Synthetase Complexed With Trna(Val) And Valyl-Adenylate
Analogue
pdb|1IYW|A Chain A, Preliminary Structure Of Thermus Thermophilus Ligand-Free
Valyl-Trna Synthetase
pdb|1IYW|B Chain B, Preliminary Structure Of Thermus Thermophilus Ligand-Free
Valyl-Trna Synthetase
Length = 862
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 27/50 (54%)
Query: 90 PFVLTTPLYYVNAPPHMGSAYTTIAADAIARFQRLLGKKVIFITGTDEHG 139
PFV+ P V HMG A DA+ R++R+ G + +++ GTD G
Sbjct: 35 PFVIFMPPPNVTGSLHMGHALDNSLQDALIRYKRMRGFEAVWLPGTDHAG 84
>pdb|1WZ2|A Chain A, The Crystal Structure Of Leucyl-Trna Synthetase And
Trna(Leucine) Complex
pdb|1WZ2|B Chain B, The Crystal Structure Of Leucyl-Trna Synthetase And
Trna(Leucine) Complex
Length = 967
Score = 36.2 bits (82), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 27/50 (54%), Gaps = 5/50 (10%)
Query: 91 FVLTTPLYYVNAPPHMGSAYTTIAADAIARFQRLLGKKVIF-----ITGT 135
F +T Y++ H+G A T D IARF+R+ G V+F ITG+
Sbjct: 36 FYITVAFPYLSGHLHVGHARTYTIPDVIARFKRMQGYNVLFPMAWHITGS 85
>pdb|1WKB|A Chain A, Crystal Structure Of Leucyl-Trna Synthetase From The
Archaeon Pyrococcus Horikoshii Reveals A Novel Editing
Domain Orientation
Length = 810
Score = 35.8 bits (81), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 27/50 (54%), Gaps = 5/50 (10%)
Query: 91 FVLTTPLYYVNAPPHMGSAYTTIAADAIARFQRLLGKKVIF-----ITGT 135
F +T Y++ H+G A T D IARF+R+ G V+F ITG+
Sbjct: 36 FYITVAFPYLSGHLHVGHARTYTIPDVIARFKRMQGYNVLFPMAWHITGS 85
>pdb|1QU2|A Chain A, Insights Into Editing From An Ile-Trna Synthetase
Structure With Trna(Ile) And Mupirocin
pdb|1QU3|A Chain A, Insights Into Editing From An Ile-Trna Synthetase
Structure With Trna(Ile) And Mupirocin
pdb|1FFY|A Chain A, Insights Into Editing From An Ile-Trna Synthetase
Structure With Trna(Ile) And Mupirocin
Length = 917
Score = 34.7 bits (78), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 23/49 (46%)
Query: 91 FVLTTPLYYVNAPPHMGSAYTTIAADAIARFQRLLGKKVIFITGTDEHG 139
F+L Y N HMG A I D I R++ + G ++ G D HG
Sbjct: 50 FILHDGPPYANGNLHMGHALNKILKDFIVRYKTMQGFYAPYVPGWDTHG 98
>pdb|2GLJ|A Chain A, Crystal Structure Of Aminopeptidase I From Clostridium
Acetobutylicum
pdb|2GLJ|B Chain B, Crystal Structure Of Aminopeptidase I From Clostridium
Acetobutylicum
pdb|2GLJ|C Chain C, Crystal Structure Of Aminopeptidase I From Clostridium
Acetobutylicum
pdb|2GLJ|D Chain D, Crystal Structure Of Aminopeptidase I From Clostridium
Acetobutylicum
pdb|2GLJ|E Chain E, Crystal Structure Of Aminopeptidase I From Clostridium
Acetobutylicum
pdb|2GLJ|F Chain F, Crystal Structure Of Aminopeptidase I From Clostridium
Acetobutylicum
pdb|2GLJ|G Chain G, Crystal Structure Of Aminopeptidase I From Clostridium
Acetobutylicum
pdb|2GLJ|H Chain H, Crystal Structure Of Aminopeptidase I From Clostridium
Acetobutylicum
pdb|2GLJ|I Chain I, Crystal Structure Of Aminopeptidase I From Clostridium
Acetobutylicum
pdb|2GLJ|J Chain J, Crystal Structure Of Aminopeptidase I From Clostridium
Acetobutylicum
pdb|2GLJ|K Chain K, Crystal Structure Of Aminopeptidase I From Clostridium
Acetobutylicum
pdb|2GLJ|L Chain L, Crystal Structure Of Aminopeptidase I From Clostridium
Acetobutylicum
pdb|2GLJ|M Chain M, Crystal Structure Of Aminopeptidase I From Clostridium
Acetobutylicum
pdb|2GLJ|N Chain N, Crystal Structure Of Aminopeptidase I From Clostridium
Acetobutylicum
pdb|2GLJ|O Chain O, Crystal Structure Of Aminopeptidase I From Clostridium
Acetobutylicum
pdb|2GLJ|P Chain P, Crystal Structure Of Aminopeptidase I From Clostridium
Acetobutylicum
pdb|2GLJ|Q Chain Q, Crystal Structure Of Aminopeptidase I From Clostridium
Acetobutylicum
pdb|2GLJ|R Chain R, Crystal Structure Of Aminopeptidase I From Clostridium
Acetobutylicum
pdb|2GLJ|S Chain S, Crystal Structure Of Aminopeptidase I From Clostridium
Acetobutylicum
pdb|2GLJ|T Chain T, Crystal Structure Of Aminopeptidase I From Clostridium
Acetobutylicum
pdb|2GLJ|U Chain U, Crystal Structure Of Aminopeptidase I From Clostridium
Acetobutylicum
pdb|2GLJ|V Chain V, Crystal Structure Of Aminopeptidase I From Clostridium
Acetobutylicum
pdb|2GLJ|W Chain W, Crystal Structure Of Aminopeptidase I From Clostridium
Acetobutylicum
pdb|2GLJ|X Chain X, Crystal Structure Of Aminopeptidase I From Clostridium
Acetobutylicum
Length = 461
Score = 31.2 bits (69), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 46/90 (51%), Gaps = 3/90 (3%)
Query: 1 IIKTGKKATPVKHSEEQTLSLQKEFEEMAARINYSIQNSLWLLNPLHSKATTHFRNRLKF 60
I TG ++ +++ +SL +++E+ R ++ NS L + + + ++ N ++
Sbjct: 296 IGATGMQSKFFENTVADIMSLCGDYDELKLR--KALYNSEMLSSDVSAAFDPNYPNVMEK 353
Query: 61 RQNLFSLSKGAVFCSYATNTDKSGTEPADP 90
R + + L KG VF Y + KSG A+P
Sbjct: 354 RNSAY-LGKGIVFNKYTGSRGKSGCNDANP 382
>pdb|4G6G|A Chain A, Crystal Structure Of Ndh With Trt
pdb|4G6G|B Chain B, Crystal Structure Of Ndh With Trt
pdb|4G6H|A Chain A, Crystal Structure Of Ndh With Nadh
pdb|4G6H|B Chain B, Crystal Structure Of Ndh With Nadh
pdb|4G73|A Chain A, Crystal Structure Of Ndh With Nadh And Quinone
pdb|4G73|B Chain B, Crystal Structure Of Ndh With Nadh And Quinone
pdb|4G74|A Chain A, Crystal Structure Of Ndh With Quinone
pdb|4G74|B Chain B, Crystal Structure Of Ndh With Quinone
Length = 502
Score = 28.1 bits (61), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 23/38 (60%), Gaps = 2/38 (5%)
Query: 226 LENQCCPIHLKPCVARKEDNYFFALSKYQ--KLLEDTL 261
LEN +HL+ VA+ E+ A +K++ K+ E+T+
Sbjct: 282 LENTSIKVHLRTAVAKVEEKQLLAKTKHEDGKITEETI 319
>pdb|4G9K|A Chain A, Structure Of The Ndi1 Protein From Saccharomyces
Cerevisiae
pdb|4G9K|B Chain B, Structure Of The Ndi1 Protein From Saccharomyces
Cerevisiae
pdb|4GAP|A Chain A, Structure Of The Ndi1 Protein From Saccharomyces
Cerevisiae In Complex With Nad+
pdb|4GAP|B Chain B, Structure Of The Ndi1 Protein From Saccharomyces
Cerevisiae In Complex With Nad+
pdb|4GAV|A Chain A, Structure Of The Ndi1 Protein From Saccharomyces
Cerevisiae In Complex With Quinone
pdb|4GAV|B Chain B, Structure Of The Ndi1 Protein From Saccharomyces
Cerevisiae In Complex With Quinone
Length = 471
Score = 27.7 bits (60), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 23/38 (60%), Gaps = 2/38 (5%)
Query: 226 LENQCCPIHLKPCVARKEDNYFFALSKYQ--KLLEDTL 261
LEN +HL+ VA+ E+ A +K++ K+ E+T+
Sbjct: 251 LENTSIKVHLRTAVAKVEEKQLLAKTKHEDGKITEETI 288
>pdb|3TQO|A Chain A, Structure Of The Cysteinyl-Trna Synthetase (Cyss) From
Coxiella Burnetii
Length = 462
Score = 27.7 bits (60), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 13/50 (26%), Positives = 23/50 (46%)
Query: 105 HMGSAYTTIAADAIARFQRLLGKKVIFITGTDEHGEKIXXXXXDGGSSPS 154
H+G + I D + R+ R G +V F+ + +KI + SP+
Sbjct: 40 HIGHGRSWIIFDXVVRYLRXRGYEVTFVRNITDIDDKIIKRAGENKESPA 89
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.133 0.402
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,398,666
Number of Sequences: 62578
Number of extensions: 431933
Number of successful extensions: 1060
Number of sequences better than 100.0: 30
Number of HSP's better than 100.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 1006
Number of HSP's gapped (non-prelim): 31
length of query: 345
length of database: 14,973,337
effective HSP length: 100
effective length of query: 245
effective length of database: 8,715,537
effective search space: 2135306565
effective search space used: 2135306565
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)