Query 046127
Match_columns 345
No_of_seqs 225 out of 2172
Neff 7.1
Searched_HMMs 46136
Date Fri Mar 29 09:01:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046127.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/046127hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02224 methionine-tRNA ligas 100.0 9E-69 1.9E-73 552.2 27.6 315 28-344 1-324 (616)
2 COG0143 MetG Methionyl-tRNA sy 100.0 1.2E-68 2.5E-73 541.8 26.4 255 88-343 4-286 (558)
3 PRK12267 methionyl-tRNA synthe 100.0 9.2E-65 2E-69 529.9 26.4 253 89-344 4-257 (648)
4 KOG0436 Methionyl-tRNA synthet 100.0 1E-63 2.2E-68 476.5 23.4 276 67-344 19-302 (578)
5 PF09334 tRNA-synt_1g: tRNA sy 100.0 5.7E-64 1.2E-68 494.6 14.3 249 91-341 1-277 (391)
6 cd00817 ValRS_core catalytic c 100.0 4.3E-61 9.4E-66 473.5 23.0 245 89-344 1-299 (382)
7 PLN02610 probable methionyl-tR 100.0 5.6E-61 1.2E-65 507.1 23.9 248 86-342 14-297 (801)
8 PRK00133 metG methionyl-tRNA s 100.0 4.6E-60 9.9E-65 495.9 24.9 249 89-341 2-279 (673)
9 PRK11893 methionyl-tRNA synthe 100.0 3.9E-59 8.4E-64 475.4 27.0 256 89-344 1-257 (511)
10 cd00814 MetRS_core catalytic c 100.0 3.8E-59 8.3E-64 449.7 23.8 238 90-344 1-238 (319)
11 TIGR00398 metG methionyl-tRNA 100.0 4.5E-58 9.7E-63 469.8 25.6 249 91-343 1-279 (530)
12 PRK12268 methionyl-tRNA synthe 100.0 5.7E-58 1.2E-62 471.5 21.6 250 88-340 2-282 (556)
13 cd00818 IleRS_core catalytic c 100.0 1.7E-51 3.7E-56 399.4 20.1 224 89-344 1-255 (338)
14 PRK13208 valS valyl-tRNA synth 100.0 2.1E-51 4.6E-56 438.1 22.5 262 75-344 23-489 (800)
15 TIGR00422 valS valyl-tRNA synt 100.0 5E-51 1.1E-55 438.2 23.7 265 74-344 17-481 (861)
16 PRK14900 valS valyl-tRNA synth 100.0 8.3E-51 1.8E-55 441.5 24.0 253 86-344 45-494 (1052)
17 PRK05729 valS valyl-tRNA synth 100.0 9.2E-50 2E-54 428.6 22.8 264 75-344 22-476 (874)
18 PLN02943 aminoacyl-tRNA ligase 100.0 8.9E-49 1.9E-53 422.7 23.7 265 75-344 73-539 (958)
19 cd00668 Ile_Leu_Val_MetRS_core 100.0 2.3E-48 4.9E-53 373.6 20.0 214 90-344 1-229 (312)
20 PRK06039 ileS isoleucyl-tRNA s 100.0 7.1E-48 1.5E-52 417.3 21.1 252 86-344 38-548 (975)
21 PTZ00419 valyl-tRNA synthetase 100.0 3.5E-47 7.6E-52 413.1 23.2 253 86-344 57-541 (995)
22 cd00812 LeuRS_core catalytic c 100.0 1.6E-46 3.5E-51 361.2 19.0 216 90-344 1-227 (314)
23 COG0525 ValS Valyl-tRNA synthe 100.0 3E-46 6.6E-51 389.2 20.9 267 72-344 15-481 (877)
24 TIGR00392 ileS isoleucyl-tRNA 100.0 4.7E-46 1E-50 399.9 21.5 251 86-344 33-567 (861)
25 PLN02381 valyl-tRNA synthetase 100.0 2.6E-45 5.6E-50 398.3 24.1 265 74-344 112-611 (1066)
26 PRK05743 ileS isoleucyl-tRNA s 100.0 1.6E-44 3.6E-49 388.6 21.1 233 86-322 46-509 (912)
27 PLN02882 aminoacyl-tRNA ligase 100.0 2.7E-44 5.9E-49 392.5 22.6 263 75-344 21-570 (1159)
28 TIGR00395 leuS_arch leucyl-tRN 100.0 5.6E-44 1.2E-48 385.4 19.3 245 76-324 12-530 (938)
29 KOG1247 Methionyl-tRNA synthet 100.0 7.1E-45 1.5E-49 346.8 10.5 252 84-342 9-292 (567)
30 PF00133 tRNA-synt_1: tRNA syn 100.0 1.7E-44 3.6E-49 374.2 13.9 253 85-344 19-517 (601)
31 PTZ00427 isoleucine-tRNA ligas 100.0 2.5E-43 5.5E-48 384.3 21.2 148 74-221 84-253 (1205)
32 PLN02843 isoleucyl-tRNA synthe 100.0 2.7E-42 5.8E-47 372.7 22.1 135 87-221 30-180 (974)
33 PRK13804 ileS isoleucyl-tRNA s 100.0 3E-42 6.6E-47 372.2 20.8 137 86-222 51-205 (961)
34 COG0060 IleS Isoleucyl-tRNA sy 100.0 2.3E-42 5E-47 363.8 18.9 265 52-324 12-544 (933)
35 TIGR00396 leuS_bact leucyl-tRN 100.0 6E-42 1.3E-46 365.6 21.1 196 86-283 26-223 (842)
36 PLN02563 aminoacyl-tRNA ligase 100.0 1.4E-41 2.9E-46 364.7 20.4 205 75-283 93-303 (963)
37 PRK00390 leuS leucyl-tRNA synt 100.0 3E-41 6.6E-46 359.3 20.2 205 75-282 18-224 (805)
38 COG0495 LeuS Leucyl-tRNA synth 100.0 1.5E-41 3.4E-46 354.7 16.4 206 75-282 18-227 (814)
39 PLN02959 aminoacyl-tRNA ligase 100.0 2E-37 4.3E-42 337.6 19.1 137 87-223 43-257 (1084)
40 KOG0435 Leucyl-tRNA synthetase 100.0 4.1E-38 8.8E-43 314.7 10.7 196 84-283 53-250 (876)
41 PRK12300 leuS leucyl-tRNA synt 100.0 2.8E-35 6E-40 316.8 17.1 216 104-323 1-482 (897)
42 KOG0432 Valyl-tRNA synthetase 100.0 2E-34 4.4E-39 295.3 15.6 254 85-344 71-549 (995)
43 KOG0434 Isoleucyl-tRNA synthet 100.0 2.3E-31 5E-36 266.5 12.9 263 75-344 21-557 (1070)
44 KOG0433 Isoleucyl-tRNA synthet 100.0 2.3E-29 4.9E-34 254.1 17.9 211 85-303 55-483 (937)
45 PTZ00399 cysteinyl-tRNA-synthe 99.9 4.4E-26 9.5E-31 237.2 15.6 191 79-319 51-248 (651)
46 PRK01611 argS arginyl-tRNA syn 99.9 3.2E-26 6.9E-31 233.5 11.0 182 20-213 48-236 (507)
47 cd00671 ArgRS_core catalytic c 99.9 3.2E-25 6.9E-30 202.1 12.1 125 90-217 1-125 (212)
48 TIGR00435 cysS cysteinyl-tRNA 99.9 2.5E-24 5.5E-29 217.0 14.7 130 85-218 18-149 (465)
49 PRK00260 cysS cysteinyl-tRNA s 99.9 3.1E-24 6.6E-29 216.6 14.6 128 87-218 22-150 (463)
50 TIGR03447 mycothiol_MshC cyste 99.9 3.4E-24 7.3E-29 211.1 14.2 128 86-217 34-166 (411)
51 PRK12418 cysteinyl-tRNA synthe 99.9 5E-24 1.1E-28 208.8 14.6 126 88-217 9-139 (384)
52 PLN02946 cysteine-tRNA ligase 99.9 2.1E-23 4.5E-28 212.2 14.8 129 86-217 78-206 (557)
53 PRK14536 cysS cysteinyl-tRNA s 99.9 2.4E-22 5.2E-27 202.4 15.3 126 89-215 22-157 (490)
54 PRK14535 cysS cysteinyl-tRNA s 99.9 2.8E-22 6.1E-27 205.8 15.2 130 88-218 246-376 (699)
55 cd00672 CysRS_core catalytic c 99.9 8.9E-22 1.9E-26 179.5 11.2 94 86-181 18-112 (213)
56 PRK14534 cysS cysteinyl-tRNA s 99.9 4.1E-21 8.9E-26 192.7 14.5 127 90-217 21-157 (481)
57 COG0018 ArgS Arginyl-tRNA synt 99.9 1.8E-21 3.9E-26 199.4 11.1 186 19-210 46-291 (577)
58 TIGR00456 argS arginyl-tRNA sy 99.8 1.1E-20 2.4E-25 195.2 12.4 189 19-214 43-290 (566)
59 PRK12451 arginyl-tRNA syntheta 99.8 2.6E-20 5.6E-25 192.0 12.7 186 19-213 44-287 (562)
60 PF01406 tRNA-synt_1e: tRNA sy 99.8 8.4E-20 1.8E-24 172.3 12.7 126 87-216 7-134 (300)
61 PLN02286 arginine-tRNA ligase 99.8 1.7E-19 3.7E-24 186.3 13.0 186 19-213 42-291 (576)
62 cd00674 LysRS_core_class_I cat 99.8 2.1E-19 4.5E-24 174.7 9.9 129 88-218 18-177 (353)
63 COG0215 CysS Cysteinyl-tRNA sy 99.8 4.3E-19 9.4E-24 175.4 11.9 136 79-218 13-150 (464)
64 PF00750 tRNA-synt_1d: tRNA sy 99.7 3E-17 6.4E-22 160.6 10.4 136 79-214 10-201 (354)
65 cd00802 class_I_aaRS_core cata 99.7 2.6E-16 5.6E-21 134.6 9.6 77 93-169 1-77 (143)
66 PRK00750 lysK lysyl-tRNA synth 99.6 1.1E-16 2.5E-21 163.1 4.8 132 89-221 23-186 (510)
67 KOG0437 Leucyl-tRNA synthetase 99.6 1.1E-15 2.3E-20 155.6 10.4 141 85-225 40-253 (1080)
68 KOG2007 Cysteinyl-tRNA synthet 99.6 2.6E-14 5.7E-19 140.7 12.3 128 87-218 54-188 (586)
69 TIGR00467 lysS_arch lysyl-tRNA 99.5 5.2E-14 1.1E-18 143.2 6.9 88 89-178 18-123 (515)
70 cd09287 GluRS_non_core catalyt 99.2 6.7E-11 1.5E-15 109.4 8.2 96 92-205 2-97 (240)
71 PRK04156 gltX glutamyl-tRNA sy 99.0 7E-10 1.5E-14 113.9 9.4 97 91-205 101-197 (567)
72 KOG4426 Arginyl-tRNA synthetas 99.0 2.2E-09 4.7E-14 104.7 9.4 188 22-220 128-369 (656)
73 TIGR00463 gltX_arch glutamyl-t 98.9 3.1E-09 6.6E-14 109.0 9.5 96 90-205 92-187 (560)
74 PRK12558 glutamyl-tRNA synthet 98.9 6.4E-09 1.4E-13 104.3 9.9 94 92-205 3-96 (445)
75 cd00807 GlnRS_core catalytic c 98.9 7.2E-09 1.6E-13 95.7 8.4 94 92-205 2-95 (238)
76 PLN03233 putative glutamate-tR 98.8 1.1E-08 2.3E-13 104.1 9.3 96 90-205 10-105 (523)
77 PTZ00402 glutamyl-tRNA synthet 98.8 2E-08 4.4E-13 103.3 9.8 95 90-204 51-146 (601)
78 COG0008 GlnS Glutamyl- and glu 98.8 1.4E-08 3.1E-13 102.4 7.8 94 92-205 10-104 (472)
79 TIGR03838 queuosine_YadB gluta 98.8 1.3E-08 2.8E-13 96.1 6.9 93 93-205 2-95 (272)
80 PTZ00437 glutaminyl-tRNA synth 98.8 2.5E-08 5.3E-13 101.9 8.9 94 92-205 52-145 (574)
81 PLN02907 glutamate-tRNA ligase 98.8 2.3E-08 4.9E-13 106.0 8.9 97 89-205 211-307 (722)
82 PF00749 tRNA-synt_1c: tRNA sy 98.7 3.1E-08 6.6E-13 95.7 7.9 94 92-205 2-96 (314)
83 PRK05710 glutamyl-Q tRNA(Asp) 98.7 3.6E-08 7.8E-13 94.2 7.8 95 91-205 5-100 (299)
84 cd00418 GlxRS_core catalytic c 98.7 5.3E-08 1.1E-12 89.8 7.1 90 92-201 2-92 (230)
85 PRK12410 glutamylglutaminyl-tR 98.6 6E-08 1.3E-12 96.9 7.5 91 95-205 3-93 (433)
86 TIGR00440 glnS glutaminyl-tRNA 98.6 6.8E-08 1.5E-12 98.4 7.9 95 92-206 1-96 (522)
87 PRK05347 glutaminyl-tRNA synth 98.6 7.6E-08 1.7E-12 98.3 8.0 94 92-205 30-124 (554)
88 TIGR00464 gltX_bact glutamyl-t 98.6 7.9E-08 1.7E-12 97.6 7.7 94 92-205 2-96 (470)
89 PRK14703 glutaminyl-tRNA synth 98.6 8.4E-08 1.8E-12 101.8 7.5 94 92-205 32-126 (771)
90 PRK14895 gltX glutamyl-tRNA sy 98.6 1.3E-07 2.9E-12 96.1 8.3 94 92-205 5-99 (513)
91 PRK01406 gltX glutamyl-tRNA sy 98.6 1.3E-07 2.7E-12 96.2 7.7 94 92-205 5-106 (476)
92 KOG1195 Arginyl-tRNA synthetas 98.6 1.2E-07 2.5E-12 94.4 7.1 182 27-215 52-287 (567)
93 PLN02859 glutamine-tRNA ligase 98.6 1.9E-07 4.2E-12 98.5 8.8 94 92-205 265-358 (788)
94 cd00808 GluRS_core catalytic c 98.5 2E-07 4.2E-12 86.6 7.6 90 92-201 2-100 (239)
95 PLN02627 glutamyl-tRNA synthet 98.5 2.3E-07 4.9E-12 94.7 7.8 96 92-205 46-148 (535)
96 PF01921 tRNA-synt_1f: tRNA sy 98.5 2.2E-08 4.7E-13 97.4 0.2 172 87-262 21-232 (360)
97 COG1384 LysS Lysyl-tRNA synthe 98.5 3.2E-07 7E-12 92.0 8.0 89 89-178 19-126 (521)
98 KOG1147 Glutamyl-tRNA syntheta 98.2 5.7E-06 1.2E-10 83.1 9.3 99 91-209 200-298 (712)
99 PRK00390 leuS leucyl-tRNA synt 97.5 6.5E-05 1.4E-09 81.3 2.9 42 250-302 390-431 (805)
100 TIGR00396 leuS_bact leucyl-tRN 97.4 0.00013 2.9E-09 79.3 4.1 42 250-302 386-427 (842)
101 KOG1148 Glutaminyl-tRNA synthe 97.3 0.00052 1.1E-08 70.0 7.2 94 92-205 249-342 (764)
102 KOG1149 Glutamyl-tRNA syntheta 97.2 0.0012 2.7E-08 65.3 8.2 96 92-205 34-136 (524)
103 PLN02563 aminoacyl-tRNA ligase 96.8 0.00082 1.8E-08 73.9 3.7 42 250-302 479-520 (963)
104 PRK12285 tryptophanyl-tRNA syn 96.0 0.065 1.4E-06 53.0 10.9 90 88-190 64-156 (368)
105 PLN02486 aminoacyl-tRNA ligase 95.8 0.12 2.7E-06 51.3 12.0 78 87-176 70-148 (383)
106 PRK12284 tryptophanyl-tRNA syn 94.6 0.22 4.7E-06 50.2 9.6 93 99-203 10-105 (431)
107 cd00395 Tyr_Trp_RS_core cataly 94.5 0.14 3E-06 48.6 7.7 71 99-174 7-80 (273)
108 PLN02886 aminoacyl-tRNA ligase 94.2 0.2 4.4E-06 49.9 8.2 90 91-196 48-140 (389)
109 PRK13354 tyrosyl-tRNA syntheta 94.1 0.16 3.4E-06 51.1 7.4 81 89-176 32-115 (410)
110 PRK08560 tyrosyl-tRNA syntheta 94.0 0.3 6.6E-06 47.6 9.2 74 90-176 30-103 (329)
111 TIGR00233 trpS tryptophanyl-tR 94.0 0.28 6.1E-06 47.8 8.8 88 92-191 4-94 (328)
112 cd00806 TrpRS_core catalytic c 93.8 0.27 5.9E-06 46.8 8.2 80 99-189 7-89 (280)
113 COG0180 TrpS Tryptophanyl-tRNA 93.7 0.48 1E-05 45.8 9.7 89 89-190 5-97 (314)
114 cd00805 TyrRS_core catalytic c 92.7 0.19 4.1E-06 47.6 5.2 71 99-174 8-81 (269)
115 PRK05912 tyrosyl-tRNA syntheta 92.7 0.42 9E-06 48.0 7.9 77 89-176 32-115 (408)
116 PRK06266 transcription initiat 92.5 0.22 4.7E-06 44.4 5.0 61 202-262 109-170 (178)
117 PTZ00126 tyrosyl-tRNA syntheta 92.5 0.69 1.5E-05 46.1 9.1 78 89-176 65-142 (383)
118 PF01927 Mut7-C: Mut7-C RNAse 92.1 0.37 8.1E-06 41.3 5.8 31 118-150 12-42 (147)
119 PF00579 tRNA-synt_1b: tRNA sy 91.0 0.71 1.5E-05 44.0 7.1 77 89-176 4-82 (292)
120 PRK00927 tryptophanyl-tRNA syn 90.8 0.8 1.7E-05 44.7 7.4 65 99-176 9-73 (333)
121 KOG0435 Leucyl-tRNA synthetase 90.5 0.07 1.5E-06 55.8 -0.4 60 283-343 417-529 (876)
122 PRK12556 tryptophanyl-tRNA syn 89.8 2.3 5E-05 41.5 9.6 93 90-196 4-99 (332)
123 TIGR00234 tyrS tyrosyl-tRNA sy 88.7 1.1 2.3E-05 44.7 6.4 78 92-176 32-112 (377)
124 COG1656 Uncharacterized conser 88.2 0.92 2E-05 39.7 4.9 89 117-221 17-108 (165)
125 TIGR00373 conserved hypothetic 86.4 0.7 1.5E-05 40.3 3.2 40 202-241 101-141 (158)
126 PRK12283 tryptophanyl-tRNA syn 86.0 3.3 7.1E-05 41.5 8.1 80 92-186 5-88 (398)
127 PTZ00348 tyrosyl-tRNA syntheta 85.9 4.7 0.0001 43.1 9.7 83 90-182 32-116 (682)
128 COG0162 TyrS Tyrosyl-tRNA synt 85.5 2.6 5.7E-05 42.2 7.1 102 99-205 40-153 (401)
129 PRK12282 tryptophanyl-tRNA syn 84.0 5.7 0.00012 38.8 8.7 72 91-176 4-75 (333)
130 PF13240 zinc_ribbon_2: zinc-r 83.4 0.62 1.3E-05 27.2 1.0 23 212-238 1-23 (23)
131 smart00531 TFIIE Transcription 81.5 1.3 2.9E-05 37.9 2.9 43 199-241 88-136 (147)
132 PF13248 zf-ribbon_3: zinc-rib 76.8 1.4 3E-05 26.4 1.1 24 211-238 3-26 (26)
133 PF03485 Arg_tRNA_synt_N: Argi 74.3 1.3 2.7E-05 34.1 0.5 37 20-62 44-85 (85)
134 KOG2713 Mitochondrial tryptoph 73.9 16 0.00036 34.9 7.9 103 89-203 13-118 (347)
135 PF09862 DUF2089: Protein of u 71.5 6.4 0.00014 32.4 4.1 48 213-264 1-49 (113)
136 PRK03824 hypA hydrogenase nick 67.3 18 0.00039 30.6 6.1 61 183-244 37-124 (135)
137 KOG0437 Leucyl-tRNA synthetase 67.1 8 0.00017 41.6 4.6 68 231-305 512-584 (1080)
138 PRK00398 rpoP DNA-directed RNA 66.6 3.4 7.5E-05 28.0 1.3 35 210-244 3-37 (46)
139 COG1592 Rubrerythrin [Energy p 66.6 6.9 0.00015 34.4 3.5 44 183-237 115-158 (166)
140 COG1675 TFA1 Transcription ini 66.3 8 0.00017 34.4 3.9 56 189-245 93-149 (176)
141 COG5270 PUA domain (predicted 66.2 4.2 9.2E-05 36.2 2.1 37 199-241 3-39 (202)
142 PF10009 DUF2252: Uncharacteri 64.2 37 0.00081 33.9 8.7 97 84-200 37-153 (385)
143 PRK12496 hypothetical protein; 61.5 3.8 8.3E-05 35.9 1.0 31 210-242 127-157 (164)
144 KOG2145 Cytoplasmic tryptophan 60.3 6.9 0.00015 37.5 2.5 46 86-136 81-126 (397)
145 COG2995 PqiA Uncharacterized p 57.7 8.4 0.00018 38.3 2.7 51 191-244 201-251 (418)
146 COG1998 RPS31 Ribosomal protei 57.3 4.4 9.4E-05 28.3 0.5 26 210-237 19-46 (51)
147 PF07754 DUF1610: Domain of un 53.4 7.8 0.00017 22.9 1.1 23 213-235 1-23 (24)
148 COG0777 AccD Acetyl-CoA carbox 52.4 15 0.00031 35.0 3.2 24 213-236 31-55 (294)
149 PRK14529 adenylate kinase; Pro 52.3 26 0.00057 32.2 4.9 121 135-263 42-180 (223)
150 PF03033 Glyco_transf_28: Glyc 51.4 21 0.00046 29.1 3.9 27 106-135 9-35 (139)
151 COG2046 MET3 ATP sulfurylase ( 51.0 20 0.00043 35.6 4.0 33 190-222 299-332 (397)
152 COG1645 Uncharacterized Zn-fin 50.8 9 0.0002 32.3 1.5 43 195-243 17-59 (131)
153 smart00661 RPOL9 RNA polymeras 50.6 7.5 0.00016 26.7 0.8 25 212-236 2-28 (52)
154 PRK00432 30S ribosomal protein 49.3 8.4 0.00018 26.9 0.9 25 210-236 20-45 (50)
155 COG1867 TRM1 N2,N2-dimethylgua 49.3 16 0.00035 36.1 3.2 90 209-303 239-335 (380)
156 PF14369 zf-RING_3: zinc-finge 48.8 10 0.00022 24.4 1.2 28 210-237 2-30 (35)
157 cd06259 YdcF-like YdcF-like. Y 47.2 1.6E+02 0.0036 24.3 12.3 103 91-199 3-119 (150)
158 TIGR02098 MJ0042_CXXC MJ0042 f 47.2 15 0.00032 23.6 1.8 28 212-239 4-36 (38)
159 COG0495 LeuS Leucyl-tRNA synth 46.7 4.6 9.9E-05 44.1 -1.2 22 280-302 414-435 (814)
160 TIGR00640 acid_CoA_mut_C methy 46.2 1.5E+02 0.0033 24.8 8.3 65 113-202 17-82 (132)
161 cd02156 nt_trans nucleotidyl t 45.7 43 0.00094 26.4 4.7 9 102-110 9-17 (105)
162 TIGR01206 lysW lysine biosynth 45.1 7.5 0.00016 27.7 0.1 39 211-251 3-43 (54)
163 PLN02674 adenylate kinase 43.8 65 0.0014 30.1 6.2 118 138-264 76-210 (244)
164 COG1439 Predicted nucleic acid 43.8 19 0.0004 32.0 2.4 34 206-243 135-168 (177)
165 KOG2623 Tyrosyl-tRNA synthetas 43.5 51 0.0011 33.0 5.6 75 91-171 65-141 (467)
166 PF10929 DUF2811: Protein of u 42.6 31 0.00067 24.8 2.9 42 251-292 8-50 (57)
167 PRK00420 hypothetical protein; 42.5 19 0.0004 29.7 2.1 47 191-242 8-54 (112)
168 COG3286 Uncharacterized protei 42.2 37 0.00081 30.6 4.0 88 110-208 86-177 (204)
169 PF14803 Nudix_N_2: Nudix N-te 42.2 12 0.00027 24.0 0.8 24 212-235 2-29 (34)
170 TIGR00125 cyt_tran_rel cytidyl 42.0 38 0.00082 24.0 3.5 9 102-110 9-17 (66)
171 PF14671 DSPn: Dual specificit 41.1 32 0.00069 29.4 3.4 38 100-137 40-78 (141)
172 PRK13671 hypothetical protein; 41.1 1.1E+02 0.0023 29.6 7.4 102 102-209 10-142 (298)
173 PRK02261 methylaspartate mutas 40.7 2.2E+02 0.0048 23.9 9.6 35 88-132 3-37 (137)
174 PF05502 Dynactin_p62: Dynacti 40.3 20 0.00044 36.9 2.4 40 205-244 21-68 (483)
175 PF05191 ADK_lid: Adenylate ki 40.0 16 0.00034 23.7 1.0 32 211-242 2-35 (36)
176 COG3357 Predicted transcriptio 39.7 15 0.00033 28.9 1.1 61 185-249 35-95 (97)
177 PF07394 DUF1501: Protein of u 39.4 84 0.0018 31.0 6.6 60 112-176 231-292 (392)
178 COG0375 HybF Zn finger protein 39.3 23 0.0005 29.2 2.1 39 204-244 64-103 (115)
179 cd01675 RNR_III Class III ribo 38.5 43 0.00093 35.1 4.5 48 186-237 493-541 (555)
180 cd02070 corrinoid_protein_B12- 37.6 2.9E+02 0.0064 24.5 9.9 80 88-202 82-162 (201)
181 PF06940 DUF1287: Domain of un 37.0 29 0.00064 30.3 2.5 28 96-128 21-50 (164)
182 PF03698 UPF0180: Uncharacteri 35.8 49 0.0011 25.5 3.3 47 118-164 13-79 (80)
183 PF13713 BRX_N: Transcription 34.1 25 0.00055 23.3 1.3 26 8-33 4-29 (39)
184 TIGR03037 anthran_nbaC 3-hydro 33.8 16 0.00035 31.9 0.5 18 206-223 110-127 (159)
185 PF04405 ScdA_N: Domain of Unk 33.7 31 0.00068 24.6 1.9 30 132-161 21-53 (56)
186 TIGR02370 pyl_corrinoid methyl 33.4 1.5E+02 0.0032 26.5 6.6 39 87-136 83-121 (197)
187 PF12773 DZR: Double zinc ribb 33.1 25 0.00054 23.9 1.2 29 209-238 11-39 (50)
188 PRK14890 putative Zn-ribbon RN 33.0 27 0.0006 25.3 1.4 32 210-241 7-38 (59)
189 PRK09875 putative hydrolase; P 33.0 94 0.002 29.8 5.6 91 113-204 139-236 (292)
190 COG1996 RPC10 DNA-directed RNA 33.0 27 0.00058 24.4 1.3 35 209-243 5-39 (49)
191 COG0143 MetG Methionyl-tRNA sy 32.9 17 0.00037 38.1 0.5 16 209-224 154-169 (558)
192 PF12674 Zn_ribbon_2: Putative 32.7 60 0.0013 25.0 3.4 71 212-288 2-80 (81)
193 PF10571 UPF0547: Uncharacteri 32.6 28 0.00061 20.9 1.2 22 212-237 2-23 (26)
194 COG2185 Sbm Methylmalonyl-CoA 32.4 1.2E+02 0.0025 26.1 5.4 82 87-202 11-92 (143)
195 KOG2845 Activating signal coin 32.3 12 0.00027 38.2 -0.6 49 212-262 172-239 (505)
196 PRK03094 hypothetical protein; 31.8 63 0.0014 25.0 3.3 46 118-163 13-78 (80)
197 PRK00564 hypA hydrogenase nick 31.4 28 0.00062 28.6 1.5 31 206-237 67-97 (117)
198 PRK12380 hydrogenase nickel in 31.4 27 0.00058 28.6 1.4 35 206-242 66-101 (113)
199 TIGR00100 hypA hydrogenase nic 31.3 27 0.00059 28.6 1.4 30 206-237 66-95 (115)
200 TIGR01610 phage_O_Nterm phage 30.9 61 0.0013 25.4 3.3 30 187-216 61-90 (95)
201 cd00350 rubredoxin_like Rubred 30.6 36 0.00077 21.4 1.5 25 211-237 2-26 (33)
202 TIGR00515 accD acetyl-CoA carb 30.5 29 0.00063 33.2 1.6 25 212-236 28-53 (285)
203 PRK13264 3-hydroxyanthranilate 30.1 19 0.00041 32.0 0.3 18 206-223 116-133 (177)
204 PLN02945 nicotinamide-nucleoti 30.0 1.2E+02 0.0027 27.8 5.7 41 84-130 17-57 (236)
205 PF01747 ATP-sulfurylase: ATP- 29.8 1.1E+02 0.0023 28.1 5.1 36 189-224 136-172 (215)
206 PF08784 RPA_C: Replication pr 29.7 44 0.00095 26.3 2.3 50 156-206 48-98 (102)
207 TIGR03590 PseG pseudaminic aci 29.5 1.2E+02 0.0027 28.4 5.7 30 103-136 11-41 (279)
208 COG0667 Tas Predicted oxidored 29.2 1.8E+02 0.0038 28.1 6.8 101 89-205 46-152 (316)
209 COG0846 SIR2 NAD-dependent pro 28.7 35 0.00076 32.0 1.8 41 206-247 118-164 (250)
210 CHL00174 accD acetyl-CoA carbo 28.7 32 0.0007 33.1 1.6 24 213-236 41-65 (296)
211 COG3078 Uncharacterized protei 28.2 56 0.0012 28.2 2.7 29 149-177 123-151 (169)
212 PRK03681 hypA hydrogenase nick 28.1 33 0.00073 28.1 1.4 31 206-237 66-96 (114)
213 PRK07111 anaerobic ribonucleos 28.0 85 0.0018 34.2 4.8 56 187-247 656-714 (735)
214 cd00598 GH18_chitinase-like Th 27.9 3.6E+02 0.0079 23.4 8.3 82 115-202 52-142 (210)
215 PF02150 RNA_POL_M_15KD: RNA p 27.9 24 0.00053 22.6 0.4 26 211-236 2-28 (35)
216 PF02698 DUF218: DUF218 domain 27.6 3.2E+02 0.007 22.6 7.6 103 91-198 5-121 (155)
217 cd06545 GH18_3CO4_chitinase Th 26.8 3.2E+02 0.0069 25.1 8.0 106 90-203 25-134 (253)
218 PF02662 FlpD: Methyl-viologen 26.8 1.6E+02 0.0034 24.4 5.3 67 124-201 50-124 (124)
219 PRK05654 acetyl-CoA carboxylas 26.2 38 0.00083 32.5 1.6 24 213-236 30-54 (292)
220 smart00834 CxxC_CXXC_SSSS Puta 25.8 49 0.0011 21.2 1.7 29 210-238 5-36 (41)
221 PF09845 DUF2072: Zn-ribbon co 25.7 33 0.00072 28.9 1.0 27 211-237 2-28 (131)
222 PRK12495 hypothetical protein; 25.2 79 0.0017 29.1 3.3 41 192-238 28-68 (226)
223 PF09297 zf-NADH-PPase: NADH p 25.1 25 0.00054 21.8 0.1 24 212-235 5-28 (32)
224 COG2888 Predicted Zn-ribbon RN 24.7 36 0.00077 24.8 0.8 32 210-241 9-40 (61)
225 PF01396 zf-C4_Topoisom: Topoi 24.5 50 0.0011 21.6 1.5 25 229-253 2-27 (39)
226 PF10007 DUF2250: Uncharacteri 24.5 67 0.0015 25.4 2.4 48 162-209 10-57 (92)
227 COG1908 FrhD Coenzyme F420-red 23.9 1.9E+02 0.004 24.3 4.9 48 156-203 75-127 (132)
228 PRK08270 anaerobic ribonucleos 23.8 1.2E+02 0.0025 32.7 4.8 48 188-240 602-651 (656)
229 TIGR03831 YgiT_finger YgiT-typ 23.8 43 0.00093 21.9 1.1 20 202-221 24-43 (46)
230 PF00248 Aldo_ket_red: Aldo/ke 23.7 1.4E+02 0.0031 27.4 5.0 47 158-204 82-132 (283)
231 cd01411 SIR2H SIR2H: Uncharact 23.6 56 0.0012 29.9 2.1 29 209-237 117-145 (225)
232 cd02071 MM_CoA_mut_B12_BD meth 23.3 4E+02 0.0087 21.5 8.4 29 101-135 8-36 (122)
233 TIGR00354 polC DNA polymerase, 23.3 1.1E+02 0.0023 34.3 4.3 64 192-261 607-670 (1095)
234 COG1057 NadD Nicotinic acid mo 23.2 4.9E+02 0.011 23.4 8.1 72 88-174 2-74 (197)
235 cd00729 rubredoxin_SM Rubredox 22.9 50 0.0011 21.0 1.2 27 210-238 2-28 (34)
236 cd03784 GT1_Gtf_like This fami 22.6 1.4E+02 0.003 29.0 4.9 27 106-135 11-37 (401)
237 PRK06260 threonine synthase; V 22.1 55 0.0012 32.6 1.9 30 210-241 3-32 (397)
238 smart00550 Zalpha Z-DNA-bindin 21.7 1.4E+02 0.003 21.8 3.6 30 188-217 37-67 (68)
239 TIGR00155 pqiA_fam integral me 21.7 50 0.0011 33.2 1.5 30 210-242 215-244 (403)
240 COG4640 Predicted membrane pro 21.6 45 0.00098 33.3 1.1 24 211-238 2-25 (465)
241 PRK00448 polC DNA polymerase I 21.5 1.1E+02 0.0024 35.9 4.4 79 185-263 863-984 (1437)
242 PRK14715 DNA polymerase II lar 21.4 1E+02 0.0022 35.7 3.9 66 191-262 655-720 (1627)
243 PRK15103 paraquat-inducible me 21.4 50 0.0011 33.4 1.5 31 211-241 11-43 (419)
244 PRK06450 threonine synthase; V 21.4 56 0.0012 31.9 1.8 28 211-241 4-31 (338)
245 COG3364 Zn-ribbon containing p 21.3 40 0.00087 27.2 0.6 26 211-237 3-29 (112)
246 smart00345 HTH_GNTR helix_turn 21.1 1.3E+02 0.0027 20.3 3.1 25 188-212 35-59 (60)
247 TIGR00155 pqiA_fam integral me 20.8 56 0.0012 32.8 1.7 30 211-240 14-45 (403)
248 PF13719 zinc_ribbon_5: zinc-r 20.6 81 0.0018 20.3 1.8 26 212-237 4-34 (37)
249 PF01155 HypA: Hydrogenase exp 20.5 50 0.0011 26.9 1.0 86 156-244 6-103 (113)
250 PRK14138 NAD-dependent deacety 20.4 1.7E+02 0.0037 27.1 4.7 53 209-263 118-178 (244)
251 cd02174 CCT CTP:phosphocholine 20.4 1.8E+02 0.0039 24.9 4.5 29 102-137 12-42 (150)
252 cd07377 WHTH_GntR Winged helix 20.3 1.3E+02 0.0029 20.7 3.2 26 187-212 39-64 (66)
253 PF07191 zinc-ribbons_6: zinc- 20.2 50 0.0011 24.8 0.9 29 209-242 16-44 (70)
254 COG3024 Uncharacterized protei 20.1 54 0.0012 24.2 1.0 16 230-245 9-24 (65)
No 1
>PLN02224 methionine-tRNA ligase
Probab=100.00 E-value=9e-69 Score=552.17 Aligned_cols=315 Identities=75% Similarity=1.245 Sum_probs=273.1
Q ss_pred HHHHHhhchhcchhhcccccccc---cccc-ccccccccc-----ccccccccccccccCCCCCCCCCCCCCEEEEccCC
Q 046127 28 MAARINYSIQNSLWLLNPLHSKA---TTHF-RNRLKFRQN-----LFSLSKGAVFCSYATNTDKSGTEPADPFVLTTPLY 98 (345)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~---~~~~-~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~P 98 (345)
|++||+.+.+|.+.+++..+... .+++ ++.+.|+.+ -++.++...+|-.+..+- ....+++|+|++|||
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~ittp~p 78 (616)
T PLN02224 1 MAARINTSLHNALSFLKAFNTPLNTKPFSFCRNCFRFSKKLPYYSQFSSGKRALYCTSSSQES--TVDEADTFVLTTPLY 78 (616)
T ss_pred CcchhcCccccccchhhhcCCCCccCcchhhhccccccccccchhhcccccceeeccCCCccc--CCCCCCeEEEeCCCC
Confidence 57899999999999987766411 1111 222222222 122444555554444443 345678899999999
Q ss_pred CCCCcCchhHHHHHHHHHHHHHHHHHcCCeEEEEcCCCCcChHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhcCcccCcc
Q 046127 99 YVNAPPHMGSAYTTIAADAIARFQRLLGKKVIFITGTDEHGEKIAAAAADGGSSPSEHCDVVSQAYKTLWKDLDIAYDKF 178 (345)
Q Consensus 99 ypnG~LHIGHar~~i~~DvlaR~lr~~G~~V~~v~G~D~~G~~I~~~A~~~g~~p~~~~~~~~~~~~~~l~~lgI~~D~f 178 (345)
||||+|||||+++++++|+++||+|++|++|.+++|+|+||++|+.+|++.|++|+++|+++++.+++.+++|||++|.|
T Consensus 79 Y~NG~~HiGHa~~~~~aDviaR~~r~~G~~V~fv~G~DehG~kI~~~A~~~g~~p~e~~~~~~~~~~~~~~~l~I~~D~f 158 (616)
T PLN02224 79 YVNAPPHMGSAYTTIAADSIARFQRLLGKKVIFITGTDEHGEKIATSAAANGRNPPEHCDIISQSYRTLWKDLDIAYDKF 158 (616)
T ss_pred CCCCCCchhccHHHHHHHHHHHHHHhcCCceEEecCcCCcchHHHHHHHHcCCChHHHHHHHHHHHHHHHHHcCCCCCcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCChhhHHHHHHHHHHHHhCCCeeecccCcccccCCCCccchhhhhcCCcCCCCCCCceEeeccccccchhHhHHHHH
Q 046127 179 IRTTEPKHEAIVKEFYSSVLANGDIYKADYEGLYCVNCEEYKDEKELLENQCCPIHLKPCVARKEDNYFFALSKYQKLLE 258 (345)
Q Consensus 179 ~~T~~~~~~~~v~~~~~~L~~kG~iy~~~~~~~yc~~c~~~l~d~el~~~~~c~~~~~pve~r~~~~~f~~l~~~~~~L~ 258 (345)
++|+++.|.+.|+++|.+|+++|+||+++++++||++|++|+++.|++++++|+.||.|+++++++||||+|++|+++|+
T Consensus 159 ~rTt~~~h~~~vq~~f~~L~~~G~Iy~~~~~~~yc~~ce~f~~~~~l~~~~~~~~~~~~~~~~~e~~~ff~Ls~~~~~L~ 238 (616)
T PLN02224 159 IRTTDPKHEAIVKEFYARVFANGDIYRADYEGLYCVNCEEYKDEKELLENNCCPVHQMPCVARKEDNYFFALSKYQKPLE 238 (616)
T ss_pred eeCCCHHHHHHHHHHHHHHHHCCCEEEeeeeeeecCCCCCCCCHHHHcCCCCCCCCCCcceEEecceEEEEhHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999987899999999999999999999999999999
Q ss_pred HHHhcCCCcccChHHHHHHHHHHhcCCCCcccccCCCCCCcccCCCCCCcEEEecCchhHHHHhcCCCCCCCchhhhhhC
Q 046127 259 DTLTENPDFVQPSFRLNEVQGWIKSGLRDFSISRASVDWGIPVPNDNKQTIYVWFDALLGYISALSEDRDQPSLRTAVSS 338 (345)
Q Consensus 259 e~l~~~~~~~~P~~~~~~~~~wl~~gL~D~~ISR~~~~WGIpvP~~~~~~iyVWfdal~gYls~~~~~~~~~~~~~~~~~ 338 (345)
+|+++++.+++|+.+++++.+||++||+||||||++.+||||||++++|||||||||++||||+++++.++......+..
T Consensus 239 ~~~~~~~~~~~p~~~~~~~~~~l~~gL~d~~ISR~~~~WGIpvP~~~~~viYVWfDAl~~Yls~~~~~~~~~~~~~~~~~ 318 (616)
T PLN02224 239 DILAQNPRFVQPSYRLNEVQSWIKSGLRDFSISRALVDWGIPVPDDDKQTIYVWFDALLGYISALTEDNKQQNLETAVSF 318 (616)
T ss_pred HHHHhCCCccCCHHHHHHHHHHHhcCCCCccccCCCCCCceECCCCCCcEEEEehhhHHHHHHHhcccccccccchhhcc
Confidence 99998877789999999999999999999999997568999999999999999999999999999988653211122455
Q ss_pred cCCCCC
Q 046127 339 GWPASL 344 (345)
Q Consensus 339 ~w~~~~ 344 (345)
|||.+|
T Consensus 319 ~w~~~v 324 (616)
T PLN02224 319 GWPASL 324 (616)
T ss_pred CCCcce
Confidence 898764
No 2
>COG0143 MetG Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.2e-68 Score=541.85 Aligned_cols=255 Identities=47% Similarity=0.844 Sum_probs=239.9
Q ss_pred CCCEEEEccCCCCCCcCchhHHHHHHHHHHHHHHHHHcCCeEEEEcCCCCcChHHHHHHHhCCCCHHHHHHHHHHHHHHH
Q 046127 88 ADPFVLTTPLYYVNAPPHMGSAYTTIAADAIARFQRLLGKKVIFITGTDEHGEKIAAAAADGGSSPSEHCDVVSQAYKTL 167 (345)
Q Consensus 88 ~~~~~I~~~~PypnG~LHIGHar~~i~~DvlaR~lr~~G~~V~~v~G~D~~G~~I~~~A~~~g~~p~~~~~~~~~~~~~~ 167 (345)
.++++||+|+|||||+|||||+++++.+|+++||+|++|++|.|++|+|+||+||+.+|+++|++|+++|+++++.++++
T Consensus 4 ~~~~~VTtalpY~Ng~~HlGH~~~~l~ADv~aRy~Rl~G~~v~fvtGtDeHGt~I~~~A~~~g~tP~el~d~~~~~~~~~ 83 (558)
T COG0143 4 MKKILVTTALPYPNGPPHLGHLYTYLAADVYARYLRLRGYEVFFLTGTDEHGTKIELKAEKEGITPQELVDKNHEEFKEL 83 (558)
T ss_pred CCcEEEecCCCCCCCCcchhhHHHHHHHHHHHHHHHhcCCeEEEEeccCCCCCHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhcCcccCccccCCChhhHHHHHHHHHHHHhCCCeeecccCcccccCCCCccchhhhhc--------------------
Q 046127 168 WKDLDIAYDKFIRTTEPKHEAIVKEFYSSVLANGDIYKADYEGLYCVNCEEYKDEKELLE-------------------- 227 (345)
Q Consensus 168 l~~lgI~~D~f~~T~~~~~~~~v~~~~~~L~~kG~iy~~~~~~~yc~~c~~~l~d~el~~-------------------- 227 (345)
++.|||+||.|+||+++.|.+.++++|.+|.++|+||.+.+.+|||+.|++|++|+++.+
T Consensus 84 ~~~l~IsfD~F~rTt~~~h~~~vq~~f~~L~~~G~I~~~~~~~~Yc~~~e~fl~dr~v~g~cp~cg~~~arGD~Ce~Cg~ 163 (558)
T COG0143 84 FKALNISFDNFIRTTSPEHKELVQEFFLKLYENGDIYLREYEGLYCVSCERFLPDRYVEGTCPKCGGEDARGDQCENCGR 163 (558)
T ss_pred HHHhCCcccccccCCCHHHHHHHHHHHHHHHHCCCEeccceeeeEcccccccccchheeccCCCcCccccCcchhhhccC
Confidence 999999999999999999999999999999999999999999999999999999998863
Q ss_pred --------CCcCCCCCCCceEeeccccccchhHhHHHHHHHHhcCCCcccChHHHHHHHHHHhcCCCCcccccCCCCCCc
Q 046127 228 --------NQCCPIHLKPCVARKEDNYFFALSKYQKLLEDTLTENPDFVQPSFRLNEVQGWIKSGLRDFSISRASVDWGI 299 (345)
Q Consensus 228 --------~~~c~~~~~pve~r~~~~~f~~l~~~~~~L~e~l~~~~~~~~P~~~~~~~~~wl~~gL~D~~ISR~~~~WGI 299 (345)
+++|..||.++|.|+++||||+|++|+++|++|+++++++++|.++++++.+||++||.||||||++.+|||
T Consensus 164 ~~~P~~l~~p~~~i~g~~p~~r~~~hyFf~L~~~~~~L~~~~~~~~~~~~p~~~~ne~~~~i~~GL~d~~IsR~~~~WGi 243 (558)
T COG0143 164 TLDPTELINPVCVISGATPEVREEEHYFFRLSKFQDKLLEWYESNPDFIWPANRRNEVLNFLKEGLKDLSITRTDLDWGI 243 (558)
T ss_pred cCCchhcCCCeeEeeCCCcccccceeEEEEHHHhHHHHHHHHHhCccccCChHHHHHHHHHHHccCcccceecCCCCCCc
Confidence 122333445567777999999999999999999999988999999999999999999999999996699999
Q ss_pred ccCCCCCCcEEEecCchhHHHHhcCCCCCCCchhhhhhCcCCCC
Q 046127 300 PVPNDNKQTIYVWFDALLGYISALSEDRDQPSLRTAVSSGWPAS 343 (345)
Q Consensus 300 pvP~~~~~~iyVWfdal~gYls~~~~~~~~~~~~~~~~~~w~~~ 343 (345)
|||++++||||||||||+||||+++++.+ ....+.|.+|||++
T Consensus 244 pvP~~p~kv~YVWfDAligYisa~~~~~~-~~~~~~~~~~W~~~ 286 (558)
T COG0143 244 PVPGDPGKVIYVWFDALIGYISALGELAE-IGDDEDFKKFWPAD 286 (558)
T ss_pred cCCCCCCCEEEEeeccHHHHHHHhcchhc-cCChHHHHhhCCCC
Confidence 99999999999999999999999999976 44568999999985
No 3
>PRK12267 methionyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=9.2e-65 Score=529.91 Aligned_cols=253 Identities=51% Similarity=0.935 Sum_probs=240.8
Q ss_pred CCEEEEccCCCCCCcCchhHHHHHHHHHHHHHHHHHcCCeEEEEcCCCCcChHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Q 046127 89 DPFVLTTPLYYVNAPPHMGSAYTTIAADAIARFQRLLGKKVIFITGTDEHGEKIAAAAADGGSSPSEHCDVVSQAYKTLW 168 (345)
Q Consensus 89 ~~~~I~~~~PypnG~LHIGHar~~i~~DvlaR~lr~~G~~V~~v~G~D~~G~~I~~~A~~~g~~p~~~~~~~~~~~~~~l 168 (345)
++|+||+|+|||||++||||+++++++|+++||+|++|++|.+++|+|+||++|+.+|++.|++|+++|+++.+.|+++|
T Consensus 4 ~~~~it~~~py~ng~~HiGH~~~~~~aDv~~R~~r~~G~~v~~~~g~D~~g~~i~~~A~~~g~~~~e~~d~~~~~fk~~l 83 (648)
T PRK12267 4 KTFYITTPIYYPNGKPHIGHAYTTIAADALARYKRLQGYDVFFLTGTDEHGQKIQQAAEKAGKTPQEYVDEISAGFKELW 83 (648)
T ss_pred CCEEEeeCCCCCCCCcccccchHHHHHHHHHHHHHhcCCceEeecCCCCcchHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCcccCccccCCChhhHHHHHHHHHHHHhCCCeeecccCcccccCCCCccchhhhhcCCcCCCCCCCceEeecccccc
Q 046127 169 KDLDIAYDKFIRTTEPKHEAIVKEFYSSVLANGDIYKADYEGLYCVNCEEYKDEKELLENQCCPIHLKPCVARKEDNYFF 248 (345)
Q Consensus 169 ~~lgI~~D~f~~T~~~~~~~~v~~~~~~L~~kG~iy~~~~~~~yc~~c~~~l~d~el~~~~~c~~~~~pve~r~~~~~f~ 248 (345)
++|||++|.|++|+++.|.+.++++|.+|.++|+||++++.++||+.|++|+++.++++.+.|++||.|+|+++++||||
T Consensus 84 ~~lgI~~D~f~rTt~~~h~~~v~~~~~~L~~kG~IY~~~~~~~yc~~~~~~l~~~~l~~~~~c~~cg~~~e~~~~~~~f~ 163 (648)
T PRK12267 84 KKLDISYDKFIRTTDERHKKVVQKIFEKLYEQGDIYKGEYEGWYCVSCETFFTESQLVDGGKCPDCGREVELVKEESYFF 163 (648)
T ss_pred HHcCCCCCCCeeCCCHHHHHHHHHHHHHHHHCCCEEEeeEEEeecCCCCccCChHHhccCCcCCCCCCcCeEEecceEEE
Confidence 99999999999999999999999999999999999999999999999999999999886578999999999999999999
Q ss_pred chhHhHHHHHHHHhcCCCcccChHHHHHHH-HHHhcCCCCcccccCCCCCCcccCCCCCCcEEEecCchhHHHHhcCCCC
Q 046127 249 ALSKYQKLLEDTLTENPDFVQPSFRLNEVQ-GWIKSGLRDFSISRASVDWGIPVPNDNKQTIYVWFDALLGYISALSEDR 327 (345)
Q Consensus 249 ~l~~~~~~L~e~l~~~~~~~~P~~~~~~~~-~wl~~gL~D~~ISR~~~~WGIpvP~~~~~~iyVWfdal~gYls~~~~~~ 327 (345)
+|++|+++|.+|+++++.+++|+.+++++. +||++||+||||||++.+||||||++++|||||||||++||+|++++..
T Consensus 164 ~l~~~~~~l~~~~~~~~~~~~p~~~~~~~~~~~l~~~l~D~~ISR~~~~WGipvP~~~~~v~yVWfDA~~~y~s~~~~~~ 243 (648)
T PRK12267 164 RMSKYQDRLLEYYEENPDFIQPESRKNEMINNFIKPGLEDLSISRTSFDWGIPVPFDPKHVVYVWIDALLNYITALGYGS 243 (648)
T ss_pred EcHHHHHHHHHHHhhCCcccCCHHHHHHHHHHHhhCCCCCcccCCCCCCcceECCCCCCCEEEEcccchHHHHHHcCCCC
Confidence 999999999999998766788999999998 9999999999999986789999999999999999999999999998753
Q ss_pred CCCchhhhhhCcCCCCC
Q 046127 328 DQPSLRTAVSSGWPASL 344 (345)
Q Consensus 328 ~~~~~~~~~~~~w~~~~ 344 (345)
++ .++|.+|||+++
T Consensus 244 ~~---~~~~~~~wp~~~ 257 (648)
T PRK12267 244 DD---DELFKKFWPADV 257 (648)
T ss_pred CC---chHHHhhcccce
Confidence 32 256999999874
No 4
>KOG0436 consensus Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1e-63 Score=476.48 Aligned_cols=276 Identities=59% Similarity=1.018 Sum_probs=259.6
Q ss_pred cccccccccccCCCCCCCCCCCCCEEEEccCCCCCCcCchhHHHHHHHHHHHHHHHHHcCCeEEEEcCCCCcChHHHHHH
Q 046127 67 LSKGAVFCSYATNTDKSGTEPADPFVLTTPLYYVNAPPHMGSAYTTIAADAIARFQRLLGKKVIFITGTDEHGEKIAAAA 146 (345)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~PypnG~LHIGHar~~i~~DvlaR~lr~~G~~V~~v~G~D~~G~~I~~~A 146 (345)
...++..|-+..+. +....++++++|+|..|||..+||||+++.+++|+++|+++++|..|+|.+|+|+||++|+.+|
T Consensus 19 ~~~r~i~~r~ySs~--s~~~~~~~~~lTTPifYvNAaPHlGhlYS~llaDai~R~q~lkg~~v~fsTGTDEHGlKIqtaa 96 (578)
T KOG0436|consen 19 SGCRAIYCRSYSSE--STVDEGETFVLTTPIFYVNAAPHLGHLYSTLLADAIARFQRLKGKKVIFSTGTDEHGLKIQTAA 96 (578)
T ss_pred hccceeeeeecccc--ccccCCceeEEecceeecCCCcchhHHHHHHHHHHHHHHHhhcCCceEeecCCCccchhhhhhH
Confidence 45566667555544 3455667999999999999999999999999999999999999999999999999999999999
Q ss_pred HhCCCCHHHHHHHHHHHHHHHHhhcCcccCccccCCChhhHHHHHHHHHHHHhCCCeeecccCcccccCCCCccchhhhh
Q 046127 147 ADGGSSPSEHCDVVSQAYKTLWKDLDIAYDKFIRTTEPKHEAIVKEFYSSVLANGDIYKADYEGLYCVNCEEYKDEKELL 226 (345)
Q Consensus 147 ~~~g~~p~~~~~~~~~~~~~~l~~lgI~~D~f~~T~~~~~~~~v~~~~~~L~~kG~iy~~~~~~~yc~~c~~~l~d~el~ 226 (345)
+..|.+|.++||++.+.|++.++.+||.++.|+||+++.|...|++++..+.++|+||++++.+|||++|++|++++++.
T Consensus 97 atnG~~P~e~cDr~s~~f~qL~k~~gi~yt~FIRTTdpkH~a~Vqefw~~~~knG~iy~g~~eGwYcvsdEtf~pEskv~ 176 (578)
T KOG0436|consen 97 ATNGRNPPELCDRISQSFRQLWKDAGIAYTKFIRTTDPKHEAIVQEFWARVFKNGDIYRGDYEGWYCVSDETFYPESKVL 176 (578)
T ss_pred hhcCCChHHHHhhhhHHHHHHHHHhCcchhheeecCCchHHHHHHHHHHHHHhCCceeeecccceEeccccccCCHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCcCC------CCCCCceEeeccccccchhHhHHHHHHHHhcCCCcccChHHHHHHHHHHhcCCCCcccccC--CCCCC
Q 046127 227 ENQCCP------IHLKPCVARKEDNYFFALSKYQKLLEDTLTENPDFVQPSFRLNEVQGWIKSGLRDFSISRA--SVDWG 298 (345)
Q Consensus 227 ~~~~c~------~~~~pve~r~~~~~f~~l~~~~~~L~e~l~~~~~~~~P~~~~~~~~~wl~~gL~D~~ISR~--~~~WG 298 (345)
.+++|+ .+|.||+++++++|||+|++|++.|.+++..+|+++.|+...+++++||+.||+|++|||+ +++||
T Consensus 177 k~p~~~gk~vsmEsg~~vv~~kE~NY~FrLSkfqk~l~d~lrkNP~fvqPs~~~~qVl~~lktglpDlSISRpsarl~WG 256 (578)
T KOG0436|consen 177 KNPCPPGKVVSMESGNPVVWRKEDNYFFRLSKFQKPLEDHLRKNPRFVQPSYFHNQVLSWLKTGLPDLSISRPSARLDWG 256 (578)
T ss_pred cCCCCCCceeeeccCCceeEecccceeeeHHhhhhHHHHHHhcCCCccCchHHHHHHHHHHHcCCCcccccChhhhcccC
Confidence 887776 3678999999999999999999999999999999999999999999999999999999995 69999
Q ss_pred cccCCCCCCcEEEecCchhHHHHhcCCCCCCCchhhhhhCcCCCCC
Q 046127 299 IPVPNDNKQTIYVWFDALLGYISALSEDRDQPSLRTAVSSGWPASL 344 (345)
Q Consensus 299 IpvP~~~~~~iyVWfdal~gYls~~~~~~~~~~~~~~~~~~w~~~~ 344 (345)
||||+|+.|+||||||||+||||.++++.++-++...++.+||+.+
T Consensus 257 IPvP~ddsQtIYVWfDAL~nYiSvig~~~~~~N~k~~ls~~wPat~ 302 (578)
T KOG0436|consen 257 IPVPGDDSQTIYVWFDALLNYISVIGYPNKQQNLKTALSFGWPATL 302 (578)
T ss_pred CCCCCCCcceEEEeHHHHhhHHHhhcCCchhccccceeecCCCcee
Confidence 9999999999999999999999999999887788899999999863
No 5
>PF09334 tRNA-synt_1g: tRNA synthetases class I (M); InterPro: IPR015413 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This domain is found in methionyl and leucyl tRNA synthetases. ; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 2D5B_A 1A8H_A 1WOY_A 2D54_A 4DLP_A 2CT8_B 2CSX_A 1MED_A 1PFU_A 1PFW_A ....
Probab=100.00 E-value=5.7e-64 Score=494.55 Aligned_cols=249 Identities=45% Similarity=0.827 Sum_probs=214.5
Q ss_pred EEEEccCCCCCCcCchhHHHHHHHHHHHHHHHHHcCCeEEEEcCCCCcChHHHHHHHhCCCCHHHHHHHHHHHHHHHHhh
Q 046127 91 FVLTTPLYYVNAPPHMGSAYTTIAADAIARFQRLLGKKVIFITGTDEHGEKIAAAAADGGSSPSEHCDVVSQAYKTLWKD 170 (345)
Q Consensus 91 ~~I~~~~PypnG~LHIGHar~~i~~DvlaR~lr~~G~~V~~v~G~D~~G~~I~~~A~~~g~~p~~~~~~~~~~~~~~l~~ 170 (345)
|+||+|+|||||+|||||+++++.+|+++||+|++|++|++++|+|+||++|+.+|+++|++|+++|+++++.|++++++
T Consensus 1 ~~ITt~~pY~Ng~lHlGH~~~~l~ADv~aR~~r~~G~~v~~~tGtDehG~~i~~~A~~~g~~p~~~~~~~~~~~~~~~~~ 80 (391)
T PF09334_consen 1 FYITTPIPYPNGDLHLGHLYPYLAADVLARYLRLRGHDVLFVTGTDEHGSKIETAAEKQGIDPEEFCDKYSAKFKELLEA 80 (391)
T ss_dssp EEEEEEEEETSSS-BHHHHHHHHHHHHHHHHHHHTT-EEEEEEEEE-SSHHHHHHHHHTTS-HHHHHHHHHHHHHHHHHH
T ss_pred CEEecCCCCCCCCCCCChhHHHHHHHHHHHHHhhcccceeeEEecchhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCcccCccccCCChhhHHHHHHHHHHHHhCCCeeecccCcccccCCCCccchhhhhcC-----------CcCCCCCCC--
Q 046127 171 LDIAYDKFIRTTEPKHEAIVKEFYSSVLANGDIYKADYEGLYCVNCEEYKDEKELLEN-----------QCCPIHLKP-- 237 (345)
Q Consensus 171 lgI~~D~f~~T~~~~~~~~v~~~~~~L~~kG~iy~~~~~~~yc~~c~~~l~d~el~~~-----------~~c~~~~~p-- 237 (345)
|||++|.|++|+++.|.+.|+++|.+|+++|+||++++.+|||++|++|+++.++.+. ..|+.||.+
T Consensus 81 ~~I~~D~F~rTt~~~h~~~v~~i~~~L~~~G~I~~~~~~~~Yc~~~e~fl~e~~v~g~CP~C~~~~a~g~~Ce~cG~~~~ 160 (391)
T PF09334_consen 81 LNISYDRFIRTTDDRHKEFVQEIFKRLYDNGYIYKREYEGWYCPSCERFLPESFVEGTCPYCGSDKARGDQCENCGRPLE 160 (391)
T ss_dssp TT---SEEEETTSHHHHHHHHHHHHHHHHTTSEEEEEEEEEEETTTTEEE-GGGETCEETTT--SSCTTTEETTTSSBEE
T ss_pred cCCCCcceeCCCCHHHHHHHHHHHHHHHhcCceeecccceeEecCcCcccccceeeccccCcCccccCCCcccCCCCCcc
Confidence 9999999999999999999999999999999999999999999999999999998631 113455544
Q ss_pred ---------------ceEeeccccccchhHhHHHHHHHHhcCCCcccChHHHHHHHHHHhcCCCCcccccCCCCCCcccC
Q 046127 238 ---------------CVARKEDNYFFALSKYQKLLEDTLTENPDFVQPSFRLNEVQGWIKSGLRDFSISRASVDWGIPVP 302 (345)
Q Consensus 238 ---------------ve~r~~~~~f~~l~~~~~~L~e~l~~~~~~~~P~~~~~~~~~wl~~gL~D~~ISR~~~~WGIpvP 302 (345)
+++|++++|||+|++|+++|.+++++.+++ +|...++.+++||+++|+||||||+ .+||||||
T Consensus 161 ~~~l~~p~~~~~g~~~~~r~e~~~ff~L~~~~~~L~~~l~~~~~~-~~~~~~~~~~~~l~~~L~d~~Is~~-~~WGI~vP 238 (391)
T PF09334_consen 161 PEELINPVCKICGSPPEVREEENYFFKLSKFRDQLREWLESNPDF-PPPRVREIVRNWLKEGLPDLSISRP-LDWGIPVP 238 (391)
T ss_dssp CCCSECEEETTTS-B-EEEEEEEEEE-GGGGHHHHHHHHHHSTTS-SHHHHHHHHHHHHHT----EE-ECT-TSSSEEET
T ss_pred cccccCCccccccccCccccceEEEEehHHhHHHHHHHHhcCCCC-CChhHHHHHHHHhhcccCceeeecC-CCCcceee
Confidence 458999999999999999999999988654 7777788889999999999999996 89999999
Q ss_pred CCCCCcEEEecCchhHHHHhcCCCCCCCchhhhhhCcCC
Q 046127 303 NDNKQTIYVWFDALLGYISALSEDRDQPSLRTAVSSGWP 341 (345)
Q Consensus 303 ~~~~~~iyVWfdal~gYls~~~~~~~~~~~~~~~~~~w~ 341 (345)
++++|+|||||||++||||++++..+.....+.+.++|+
T Consensus 239 ~~~~~~iyVWfdal~~Ylt~~~~~~~~~~~~~~~~~~w~ 277 (391)
T PF09334_consen 239 GDPGQVIYVWFDALIGYLTATGYLAEKRGDPEEFKKWWA 277 (391)
T ss_dssp TEEEEEE-HHHHHHTHHHHTTTTTHHHTTTSHHHHHHHC
T ss_pred ccCCceEEEcchHHHHHHHHhccccccccccchhhhhcc
Confidence 999999999999999999999998743344578999994
No 6
>cd00817 ValRS_core catalytic core domain of valyl-tRNA synthetases. Valine amino-acyl tRNA synthetase (ValRS) catalytic core domain. This enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. ValRS has an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.
Probab=100.00 E-value=4.3e-61 Score=473.54 Aligned_cols=245 Identities=23% Similarity=0.362 Sum_probs=227.4
Q ss_pred CCEEEEccCCCCCCcCchhHHHHHHHHHHHHHHHHHcCCeEEEEcCCCCcChHHHHHHHhC---------CCCHH-----
Q 046127 89 DPFVLTTPLYYVNAPPHMGSAYTTIAADAIARFQRLLGKKVIFITGTDEHGEKIAAAAADG---------GSSPS----- 154 (345)
Q Consensus 89 ~~~~I~~~~PypnG~LHIGHar~~i~~DvlaR~lr~~G~~V~~v~G~D~~G~~I~~~A~~~---------g~~p~----- 154 (345)
++|+|++|||||||+|||||+++++++|+++||+||+|++|.+++|+|+||+||+..|++. +++++
T Consensus 1 ~~f~i~~~pPy~nG~lHiGH~~~~~~~Dv~~Ry~r~~G~~V~~~~G~D~hG~pie~~a~k~~~~~~~~~~~~~~~~~~~~ 80 (382)
T cd00817 1 PVFVIDTPPPNVTGSLHMGHALNNTIQDIIARYKRMKGYNVLWPPGTDHAGIATQVVVEKKLGIEGKTRHDLGREEFLEK 80 (382)
T ss_pred CcEEEecCCCCCCCcchHHHHHHHHHHHHHHHHHHhcCCcccccCccCCCCChHHHHHHHHhcccccchhcCCHHHHHHH
Confidence 4799999999999999999999999999999999999999999999999999999999874 34544
Q ss_pred --HHHHHHHHHHHHHHhhcCcccC--ccccCCChhhHHHHHHHHHHHHhCCCeeecccCcccccCCCCccchhhhhcCCc
Q 046127 155 --EHCDVVSQAYKTLWKDLDIAYD--KFIRTTEPKHEAIVKEFYSSVLANGDIYKADYEGLYCVNCEEYKDEKELLENQC 230 (345)
Q Consensus 155 --~~~~~~~~~~~~~l~~lgI~~D--~f~~T~~~~~~~~v~~~~~~L~~kG~iy~~~~~~~yc~~c~~~l~d~el~~~~~ 230 (345)
++++++.+.+++++++|||++| .+++|+++.|.+.++++|.+|+++|+||++.++++||+.|+++|++.|+
T Consensus 81 ~~~~~~~~~~~~~~~~~~lgi~~Dw~~~~~T~~~~~~~~v~~~f~~L~~~G~iy~~~~~~~yc~~~~t~l~~~ev----- 155 (382)
T cd00817 81 CWEWKEESGGKIREQLKRLGASVDWSREYFTMDPGLSRAVQEAFVRLYEKGLIYRDNRLVNWCPKLRTAISDIEV----- 155 (382)
T ss_pred HHHHHHHHHHHHHHHHHHhCceeecCCCcCCCCHHHHHHHHHHHHHHHHCCCEEeeeeEEeecCCcCCCCCcchh-----
Confidence 5889999999999999999887 9999999999999999999999999999999999999999999999988
Q ss_pred CCCCCCCceEeeccccccchhHhHHHHHHHHhcCCCcccChHHHHHHHHHHhcCCCCcccccCCCCCCcccCC----C--
Q 046127 231 CPIHLKPCVARKEDNYFFALSKYQKLLEDTLTENPDFVQPSFRLNEVQGWIKSGLRDFSISRASVDWGIPVPN----D-- 304 (345)
Q Consensus 231 c~~~~~pve~r~~~~~f~~l~~~~~~L~e~l~~~~~~~~P~~~~~~~~~wl~~gL~D~~ISR~~~~WGIpvP~----~-- 304 (345)
|++||+|+++++++||||+|++|+++|++++++++..++|+.+++++.+||++ |+||||||+ .+||||||. +
T Consensus 156 c~~cg~~~~~~~~~qwf~~l~~~~~~l~~~~~~~~~~~~P~~~~~~~~~~l~~-l~Dw~ISR~-~~WGipvP~~~~~~~~ 233 (382)
T cd00817 156 CSRSGDVIEPLLKPQWFVKVKDLAKKALEAVKEGDIKFVPERMEKRYENWLEN-IRDWCISRQ-LWWGHRIPAWYCKDGG 233 (382)
T ss_pred cccCCCeEEEEecCeeEEehHHHHHHHHHHHhcCCcEEEChHHHHHHHHHHhh-Cccceeeec-cccCCccceEEeCCCC
Confidence 89999999999999999999999999999999865567999999999999987 999999997 699999995 3
Q ss_pred ------------------------------CCCcEEEecCchhHHHHhcCCCCCCCchhhhhhCcCCCCC
Q 046127 305 ------------------------------NKQTIYVWFDALLGYISALSEDRDQPSLRTAVSSGWPASL 344 (345)
Q Consensus 305 ------------------------------~~~~iyVWfdal~gYls~~~~~~~~~~~~~~~~~~w~~~~ 344 (345)
+++|+||||||+++|+++++++.++ +.+.++||+|+
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~dvWfds~~~~~~~~~~~~~~----~~~~~~~p~d~ 299 (382)
T cd00817 234 HWVVAREEDEAIDKAAPEACVPCGGEELKQDEDVLDTWFSSSLWPFSTLGWPEET----KDLKKFYPTSL 299 (382)
T ss_pred cEEecchhHHHHHHhccccccCCCccCeeECCceeeeeecCCCcHHHHhCCCCcc----hhHhhcCCCCe
Confidence 4799999999999999999866442 56999999985
No 7
>PLN02610 probable methionyl-tRNA synthetase
Probab=100.00 E-value=5.6e-61 Score=507.12 Aligned_cols=248 Identities=28% Similarity=0.575 Sum_probs=225.0
Q ss_pred CCCCCEEEEccCCCCCCcCchhHHHH-HHHHHHHHHHHHHcCCeEEEEcCCCCcChHHHHHHHhCCCCHHHHHHHHHHHH
Q 046127 86 EPADPFVLTTPLYYVNAPPHMGSAYT-TIAADAIARFQRLLGKKVIFITGTDEHGEKIAAAAADGGSSPSEHCDVVSQAY 164 (345)
Q Consensus 86 ~~~~~~~I~~~~PypnG~LHIGHar~-~i~~DvlaR~lr~~G~~V~~v~G~D~~G~~I~~~A~~~g~~p~~~~~~~~~~~ 164 (345)
...++++||+|+|||||+|||||+++ ++.+|+++||+||+|++|+|++|+|+||++|+.+|++.|++|+++|+++++.|
T Consensus 14 ~~~~~~~ITt~~pY~Ng~~HlGH~~~~~l~aDv~aRy~r~~G~~v~f~~GtDehG~~i~~~A~~~g~~p~e~~d~~~~~~ 93 (801)
T PLN02610 14 PGKRNILITSALPYVNNVPHLGNIIGCVLSADVFARYCRLRGYNAIYICGTDEYGTATETKALEENCTPKEICDKYHAIH 93 (801)
T ss_pred CCCCCEEEeCCCCCCCCCcccchhhhhHHHHHHHHHHHHhCCCceEecccccCCcHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 34578999999999999999999995 78899999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcCcccCccccCCChhhHHHHHHHHHHHHhCCCeeecccCcccccCCCCccchhhhhc-----------------
Q 046127 165 KTLWKDLDIAYDKFIRTTEPKHEAIVKEFYSSVLANGDIYKADYEGLYCVNCEEYKDEKELLE----------------- 227 (345)
Q Consensus 165 ~~~l~~lgI~~D~f~~T~~~~~~~~v~~~~~~L~~kG~iy~~~~~~~yc~~c~~~l~d~el~~----------------- 227 (345)
++++++|||++|.|++|+++.|.+.|+++|.+|+++|+||++.+.++||++|++||+|.++.+
T Consensus 94 ~~~~~~l~i~~D~f~rT~~~~h~~~vq~~f~~L~~~G~Iy~~~~~~~yc~~~e~fl~d~~v~G~CP~~~C~~~~a~Gd~C 173 (801)
T PLN02610 94 KEVYDWFDISFDKFGRTSTPQQTEICQAIFKKLMENNWLSENTMQQLYCDTCQKFLADRLVEGTCPTEGCNYDSARGDQC 173 (801)
T ss_pred HHHHHHcCCccccCccCCCHHHHHHHHHHHHHHHHCCCEEEeeEEEeecCCCCCCcchHHhcCcCCccccCccccccchh
Confidence 999999999999999999999999999999999999999999999999999999999998752
Q ss_pred -------------CCcCCCCCCCceEeeccccccchhHhHHHHHHHHhcCCCcccC---hHHHHHHHHHHhcCCCCcccc
Q 046127 228 -------------NQCCPIHLKPCVARKEDNYFFALSKYQKLLEDTLTENPDFVQP---SFRLNEVQGWIKSGLRDFSIS 291 (345)
Q Consensus 228 -------------~~~c~~~~~pve~r~~~~~f~~l~~~~~~L~e~l~~~~~~~~P---~~~~~~~~~wl~~gL~D~~IS 291 (345)
+++|..||.++++++++||||+|++|+++|.+|+++++ +.| .+.++.+.+||++||+|||||
T Consensus 174 e~Cg~~~~p~eLi~p~c~~~g~~~~~~~~~~~ff~Ls~~~~~L~~~~~~~~--~~~~~~~n~~~~~~~~l~~gL~d~~Is 251 (801)
T PLN02610 174 EKCGKLLNPTELIDPKCKVCKNTPRIRDTDHLFLELPLLKDKLVEYINETS--VAGGWSQNAIQTTNAWLRDGLKPRCIT 251 (801)
T ss_pred hhccccCChhhhcCCcccCCCCcceEEEcceEEEEhHHHHHHHHHHHHhCC--CCCCcCHHHHHHHHHHHhCCCCCccee
Confidence 13355578899999999999999999999999998753 233 344556679999999999999
Q ss_pred cCCCCCCcccCCC--CCCcEEEecCchhHHHHhcCCCCCCCchhhhhhCcCCC
Q 046127 292 RASVDWGIPVPND--NKQTIYVWFDALLGYISALSEDRDQPSLRTAVSSGWPA 342 (345)
Q Consensus 292 R~~~~WGIpvP~~--~~~~iyVWfdal~gYls~~~~~~~~~~~~~~~~~~w~~ 342 (345)
|+ ..||||||.+ ++||||||||||+||||++..+.+ .|.+|||+
T Consensus 252 R~-~~WGipvP~~~~~~~v~YVWfDAl~~Yis~~~~~~~------~~~~~W~~ 297 (801)
T PLN02610 252 RD-LKWGVPVPLEKYKDKVFYVWFDAPIGYVSITACYTP------EWEKWWKN 297 (801)
T ss_pred ee-cCCcccCCCCCCCCcEEEEehhhHHHHHHHHhhhhh------HHHHhcCC
Confidence 96 8999999976 899999999999999999865532 48889976
No 8
>PRK00133 metG methionyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=4.6e-60 Score=495.91 Aligned_cols=249 Identities=27% Similarity=0.485 Sum_probs=230.7
Q ss_pred CCEEEEccCCCCCCcCchhHHHHHHHHHHHHHHHHHcCCeEEEEcCCCCcChHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Q 046127 89 DPFVLTTPLYYVNAPPHMGSAYTTIAADAIARFQRLLGKKVIFITGTDEHGEKIAAAAADGGSSPSEHCDVVSQAYKTLW 168 (345)
Q Consensus 89 ~~~~I~~~~PypnG~LHIGHar~~i~~DvlaR~lr~~G~~V~~v~G~D~~G~~I~~~A~~~g~~p~~~~~~~~~~~~~~l 168 (345)
++++||+|+|||||.|||||+++++++|+++||+|++|++|.+++|+|+||+||+.+|++.|++|+++|+++.+.|++++
T Consensus 2 ~~~~itt~~py~ng~~HiGH~~~~l~aDv~aR~~r~~G~~V~~~~g~D~hG~~i~~~A~~~g~~p~e~~~~~~~~~~~~~ 81 (673)
T PRK00133 2 RKILVTCALPYANGPIHLGHLVEYIQADIWVRYQRMRGHEVLFVCADDAHGTPIMLKAEKEGITPEELIARYHAEHKRDF 81 (673)
T ss_pred CCEEEeCCCCCCCCcccccchHHHHHHHHHHHHHHhcCCeeEEeCccCCCChHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCcccCccccCCChhhHHHHHHHHHHHHhCCCeeecccCcccccCCCCccchhhhhc---------------------
Q 046127 169 KDLDIAYDKFIRTTEPKHEAIVKEFYSSVLANGDIYKADYEGLYCVNCEEYKDEKELLE--------------------- 227 (345)
Q Consensus 169 ~~lgI~~D~f~~T~~~~~~~~v~~~~~~L~~kG~iy~~~~~~~yc~~c~~~l~d~el~~--------------------- 227 (345)
++|||++|.|++|+++.|.+.++++|.+|+++|+||++++.++||+.|++||++.++.+
T Consensus 82 ~~l~i~~d~f~rtt~~~h~~~v~~~~~~L~~~G~iy~~~~~~~y~~~~~~~l~~~~v~g~cp~C~~~d~~g~~ce~cg~~ 161 (673)
T PRK00133 82 AGFGISFDNYGSTHSEENRELAQEIYLKLKENGYIYEKTIEQLYDPEKGMFLPDRFVKGTCPKCGAEDQYGDNCEVCGAT 161 (673)
T ss_pred HHhCCCCCCCccCCcHHHHHHHHHHHHHHHHCCCEEEeeeEEEEeCCCCCCccchheecccCCCCCcccCCchhhhcccc
Confidence 99999999999999999999999999999999999999999999999999999988751
Q ss_pred -------CCcCCCCCCCceEeeccccccchhHhHHHHHHHHhcCCCcccChHHHHHHHHHHhcCCCCcccccCCCCC-Cc
Q 046127 228 -------NQCCPIHLKPCVARKEDNYFFALSKYQKLLEDTLTENPDFVQPSFRLNEVQGWIKSGLRDFSISRASVDW-GI 299 (345)
Q Consensus 228 -------~~~c~~~~~pve~r~~~~~f~~l~~~~~~L~e~l~~~~~~~~P~~~~~~~~~wl~~gL~D~~ISR~~~~W-GI 299 (345)
++.|.+||.++|+++++||||+|++|+++|.+++++.+ .| |+.+++++.+||+++|+||||||+ .+| ||
T Consensus 162 ~~~~~l~~~~~~~~g~~~e~~~~~~~f~~l~~~~~~l~~~~~~~~-~~-~~~~~~~~~~~l~~~l~d~~ISR~-~~W~Gi 238 (673)
T PRK00133 162 YSPTELINPKSAISGATPVLKESEHFFFKLPRFEEFLKEWITRSG-EL-QPNVANKMKEWLEEGLQDWDISRD-APYFGF 238 (673)
T ss_pred CChHhhcCCccccCCCcceEEecceEEEEHHHHHHHHHHHHhcCC-CC-CHHHHHHHHHHHhCCCcccceeee-CCccce
Confidence 24577788999999999999999999999999997654 34 778899999999999999999997 899 99
Q ss_pred ccCCCCCCcEEEecCchhHHHHhcCCCCCCCchhhhhhCcCC
Q 046127 300 PVPNDNKQTIYVWFDALLGYISALSEDRDQPSLRTAVSSGWP 341 (345)
Q Consensus 300 pvP~~~~~~iyVWfdal~gYls~~~~~~~~~~~~~~~~~~w~ 341 (345)
|||++++|+|||||||++||+|++..+.+.+ ..+.|.+||+
T Consensus 239 pvP~~~~~~iyVW~dal~~Yl~~~~~~~~~~-~~~~~~~~w~ 279 (673)
T PRK00133 239 EIPGAPGKVFYVWLDAPIGYISSTKNLCDKR-GGLDWDEYWK 279 (673)
T ss_pred ECCCCCCeEEEEcccchhhhhHHHhhhcccc-cchhHHHhcC
Confidence 9999999999999999999999997654321 1246899994
No 9
>PRK11893 methionyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=3.9e-59 Score=475.39 Aligned_cols=256 Identities=53% Similarity=0.943 Sum_probs=239.6
Q ss_pred CCEEEEccCCCCCCcCchhHHHHHHHHHHHHHHHHHcCCeEEEEcCCCCcChHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Q 046127 89 DPFVLTTPLYYVNAPPHMGSAYTTIAADAIARFQRLLGKKVIFITGTDEHGEKIAAAAADGGSSPSEHCDVVSQAYKTLW 168 (345)
Q Consensus 89 ~~~~I~~~~PypnG~LHIGHar~~i~~DvlaR~lr~~G~~V~~v~G~D~~G~~I~~~A~~~g~~p~~~~~~~~~~~~~~l 168 (345)
++++|++|||||||++||||+|+++.+|+++||+|++|++|.+++|+|+||++|+..|++.|++++++|+++.+.|+++|
T Consensus 1 ~~~~i~~~~P~~~g~~HiGh~~~~~~~Dv~~R~~r~~G~~v~~v~g~dd~g~~i~~~a~~~g~~~~~~~~~~~~~~~~~l 80 (511)
T PRK11893 1 KKFYITTPIYYPNGKPHIGHAYTTLAADVLARFKRLRGYDVFFLTGTDEHGQKIQRKAEEAGISPQELADRNSAAFKRLW 80 (511)
T ss_pred CCEEEecCCCCCCCCcccchhHHHHHHHHHHHHHHhcCCcEEecCCCCCCChHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 47999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCcccCccccCCChhhHHHHHHHHHHHHhCCCeeecccCcccccCCCCccchhhhhcC-CcCCCCCCCceEeeccccc
Q 046127 169 KDLDIAYDKFIRTTEPKHEAIVKEFYSSVLANGDIYKADYEGLYCVNCEEYKDEKELLEN-QCCPIHLKPCVARKEDNYF 247 (345)
Q Consensus 169 ~~lgI~~D~f~~T~~~~~~~~v~~~~~~L~~kG~iy~~~~~~~yc~~c~~~l~d~el~~~-~~c~~~~~pve~r~~~~~f 247 (345)
++|||++|.|++|+++.|.+.++++|.+|.++|++|++++.++||++|++++++.++.++ ++|++||+|+++++++|||
T Consensus 81 ~~l~I~~D~~~~t~~~~~~~~v~~~~~~L~~~G~iY~~~~~~~~~~~~~~~l~~~~l~~~~p~~~~~~~~~~~~~~~~~f 160 (511)
T PRK11893 81 EALNISYDDFIRTTDPRHKEAVQEIFQRLLANGDIYLGKYEGWYCVRCEEFYTESELIEDGYRCPPTGAPVEWVEEESYF 160 (511)
T ss_pred HHhCCCcCCceeCCCHHHHHHHHHHHHHHHHCCCEEEeeeeeeccccccccCCHHHhcCCCCCCCCCCCcceEEecCeEE
Confidence 999999999999999999999999999999999999999999999999999999999864 4699999999999999999
Q ss_pred cchhHhHHHHHHHHhcCCCcccChHHHHHHHHHHhcCCCCcccccCCCCCCcccCCCCCCcEEEecCchhHHHHhcCCCC
Q 046127 248 FALSKYQKLLEDTLTENPDFVQPSFRLNEVQGWIKSGLRDFSISRASVDWGIPVPNDNKQTIYVWFDALLGYISALSEDR 327 (345)
Q Consensus 248 ~~l~~~~~~L~e~l~~~~~~~~P~~~~~~~~~wl~~gL~D~~ISR~~~~WGIpvP~~~~~~iyVWfdal~gYls~~~~~~ 327 (345)
|+|++|+++|.++++++..+++|+..++.+.+||+++++||||||++.+||||||++++|++||||||+++|+|++++++
T Consensus 161 ~~l~~~~~~l~~~~~~~~~~~~p~~~~~~~~~~l~~~~~D~~isR~~~~WGipiP~~~~~~~~vWfda~~~y~s~~~~p~ 240 (511)
T PRK11893 161 FRLSKYQDKLLELYEANPDFIQPASRRNEVISFVKSGLKDLSISRTNFDWGIPVPGDPKHVIYVWFDALTNYLTALGYPD 240 (511)
T ss_pred EEcHHHHHHHHHHHHhCCCccCCHHHHHHHHHHHHCCCCCcccCCCCCCCCccCCCCCCceEEEEecCcHHHHhHhcccc
Confidence 99999999999999885556789988999999999999999999933799999999999999999999999999998876
Q ss_pred CCCchhhhhhCcCCCCC
Q 046127 328 DQPSLRTAVSSGWPASL 344 (345)
Q Consensus 328 ~~~~~~~~~~~~w~~~~ 344 (345)
+.....+.+.+|||.|+
T Consensus 241 ~~~~~~~~~~~~~~~D~ 257 (511)
T PRK11893 241 DEELLAELFNKYWPADV 257 (511)
T ss_pred ccccchhHHHhcCCCcc
Confidence 54323356889999874
No 10
>cd00814 MetRS_core catalytic core domain of methioninyl-tRNA synthetases. Methionine tRNA synthetase (MetRS) catalytic core domain. This class I enzyme aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. MetRS, which consists of the core domain and an anti-codon binding domain, functions as a monomer. However, in some species the anti-codon binding domain is followed by an EMAP domain. In this case, MetRS functions as a homodimer. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. As a result of a deletion event, MetRS has a significantly shorter core domain insertion than IleRS, ValRS, and LeuR. Consequently, the MetRS insertion lacks the editing function.
Probab=100.00 E-value=3.8e-59 Score=449.71 Aligned_cols=238 Identities=49% Similarity=0.888 Sum_probs=222.3
Q ss_pred CEEEEccCCCCCCcCchhHHHHHHHHHHHHHHHHHcCCeEEEEcCCCCcChHHHHHHHhCCCCHHHHHHHHHHHHHHHHh
Q 046127 90 PFVLTTPLYYVNAPPHMGSAYTTIAADAIARFQRLLGKKVIFITGTDEHGEKIAAAAADGGSSPSEHCDVVSQAYKTLWK 169 (345)
Q Consensus 90 ~~~I~~~~PypnG~LHIGHar~~i~~DvlaR~lr~~G~~V~~v~G~D~~G~~I~~~A~~~g~~p~~~~~~~~~~~~~~l~ 169 (345)
+++|++|+|||||+|||||+++++++|+++||+|++|++|.+++|+|+||++|+.+|++.|++|+++|+.+.+.|+++|+
T Consensus 1 ~~~it~~~Py~ng~~HlGH~~~~~~~Dv~~R~~r~~G~~V~~~~g~Dd~g~~i~~~a~~~g~~~~e~~~~~~~~~~~~l~ 80 (319)
T cd00814 1 KVLITTALPYVNGVPHLGHLYGTVLADVFARYQRLRGYDVLFVTGTDEHGTKIEQKAEEEGVTPQELCDKYHEIFKDLFK 80 (319)
T ss_pred CEEEEeCCCCCCCCcchhhHHHHHHHHHHHHHHHhCCCcccccCccCCCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCcccCccccCCChhhHHHHHHHHHHHHhCCCeeecccCcccccCCCCccchhhhhcCCcCCCCCCCceEeeccccccc
Q 046127 170 DLDIAYDKFIRTTEPKHEAIVKEFYSSVLANGDIYKADYEGLYCVNCEEYKDEKELLENQCCPIHLKPCVARKEDNYFFA 249 (345)
Q Consensus 170 ~lgI~~D~f~~T~~~~~~~~v~~~~~~L~~kG~iy~~~~~~~yc~~c~~~l~d~el~~~~~c~~~~~pve~r~~~~~f~~ 249 (345)
+|||++|.|++|+++.|.+.++++|++|.++|++|+++..++||+.|+++|+ |+++++||||+
T Consensus 81 ~LgI~~D~~~~tt~~~~~~~v~~i~~~L~ekG~iY~~~~~~~yc~~~~~~l~-----------------e~~~~~~~ff~ 143 (319)
T cd00814 81 WLNISFDYFIRTTSPRHKEIVQEFFKKLYENGYIYEGEYEGLYCVSCERFLP-----------------EWREEEHYFFR 143 (319)
T ss_pred HcCCcCCCCeeCCCHHHHHHHHHHHHHHHHCCCEEeeeeeeeECCCCCcEee-----------------EEEeeeeEEEE
Confidence 9999999999999999999999999999999999999999999999999999 89999999999
Q ss_pred hhHhHHHHHHHHhcCCCcccChHHHHHHHHHHhcCCCCcccccCCCCCCcccCCCCCCcEEEecCchhHHHHhcCCCCCC
Q 046127 250 LSKYQKLLEDTLTENPDFVQPSFRLNEVQGWIKSGLRDFSISRASVDWGIPVPNDNKQTIYVWFDALLGYISALSEDRDQ 329 (345)
Q Consensus 250 l~~~~~~L~e~l~~~~~~~~P~~~~~~~~~wl~~gL~D~~ISR~~~~WGIpvP~~~~~~iyVWfdal~gYls~~~~~~~~ 329 (345)
|++|+++|++++++++.+++|+..++.+.+||+++|+||||||+..+||||||++++++|||||||++||+|+++++...
T Consensus 144 l~~~~~~l~~~~~~~~~~~~p~~~~~~~~~~l~~~l~d~~isR~~~~WGipvp~~~~~~~yvWfda~~~y~~~~~~~~~~ 223 (319)
T cd00814 144 LSKFQDRLLEWLEKNPDFIWPENARNEVLSWLKEGLKDLSITRDLFDWGIPVPLDPGKVIYVWFDALIGYISATGYYNEE 223 (319)
T ss_pred hHHHHHHHHHHHHhCCccCCCHHHHHHHHHHHhCCCcccCCCccCcccCeeCCCCCCcEEEEehhhHHHHHHHccccccc
Confidence 99999999999998765578999999999999999999999998339999999999999999999999999999987654
Q ss_pred CchhhhhhCcCCCCC
Q 046127 330 PSLRTAVSSGWPASL 344 (345)
Q Consensus 330 ~~~~~~~~~~w~~~~ 344 (345)
......+..+||.++
T Consensus 224 ~~~~~~~~~~~~~~v 238 (319)
T cd00814 224 WGNSWWWKDGWPELV 238 (319)
T ss_pred ccchhhhhcCCCceE
Confidence 222235667777653
No 11
>TIGR00398 metG methionyl-tRNA synthetase. The methionyl-tRNA synthetase (metG) is a class I amino acyl-tRNA ligase. This model appears to recognize the methionyl-tRNA synthetase of every species, including eukaryotic cytosolic and mitochondrial forms. The UPGMA difference tree calculated after search and alignment according to this model shows an unusual deep split between two families of MetG. One family contains forms from the Archaea, yeast cytosol, spirochetes, and E. coli, among others. The other family includes forms from yeast mitochondrion, Synechocystis sp., Bacillus subtilis, the Mycoplasmas, Aquifex aeolicus, and Helicobacter pylori. The E. coli enzyme is homodimeric, although monomeric forms can be prepared that are fully active. Activity of this enzyme in bacteria includes aminoacylation of fMet-tRNA with Met; subsequent formylation of the Met to fMet is catalyzed by a separate enzyme. Note that the protein from Aquifex aeolicus is split into an alpha (large) and beta (sma
Probab=100.00 E-value=4.5e-58 Score=469.81 Aligned_cols=249 Identities=41% Similarity=0.752 Sum_probs=228.8
Q ss_pred EEEEccCCCCCCcCchhHHHHHHHHHHHHHHHHHcCCeEEEEcCCCCcChHHHHHHHhCCCCHHHHHHHHHHHHHHHHhh
Q 046127 91 FVLTTPLYYVNAPPHMGSAYTTIAADAIARFQRLLGKKVIFITGTDEHGEKIAAAAADGGSSPSEHCDVVSQAYKTLWKD 170 (345)
Q Consensus 91 ~~I~~~~PypnG~LHIGHar~~i~~DvlaR~lr~~G~~V~~v~G~D~~G~~I~~~A~~~g~~p~~~~~~~~~~~~~~l~~ 170 (345)
++||+|+|||||.|||||+++++.+|+++||+|++|++|.+++|+|+||++|+.+|++.|++|+++++.+.+.|++++++
T Consensus 1 ~~it~~~P~~ng~lHiGH~~~~~~aDvl~R~~r~~G~~V~~v~g~D~~g~~i~~~a~~~g~~~~e~~~~~~~~~~~~l~~ 80 (530)
T TIGR00398 1 ILITTALPYANGKPHLGHAYTTILADVYARYKRLRGYEVLFVCGTDEHGTKIELKAEQEGLTPKELVDKYHEEFKDDWKW 80 (530)
T ss_pred CEEecCCCCCCCCcccchhHHHHHHHHHHHHHHhcCCeEEEecccCCCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCcccCccccCCChhhHHHHHHHHHHHHhCCCeeecccCcccccCCCCccchhhhhc-----------------------
Q 046127 171 LDIAYDKFIRTTEPKHEAIVKEFYSSVLANGDIYKADYEGLYCVNCEEYKDEKELLE----------------------- 227 (345)
Q Consensus 171 lgI~~D~f~~T~~~~~~~~v~~~~~~L~~kG~iy~~~~~~~yc~~c~~~l~d~el~~----------------------- 227 (345)
|||++|.|++|+++.|.+.++++|.+|.++|++|++++.++||+.|+++++|.++.+
T Consensus 81 LgI~~D~~~~t~~~~~~~~v~~~~~~L~~kG~iY~~~~~v~~~~~~~~~l~~~~v~g~cp~c~~~~~~g~~ce~cg~~~~ 160 (530)
T TIGR00398 81 LNISFDRFIRTTDEEHKEIVQKIFQKLKENGYIYEKEIKQLYCPECEMFLPDRYVEGTCPKCGSEDARGDHCEVCGRHLE 160 (530)
T ss_pred hCCCCCCCccCCCHHHHHHHHHHHHHHHHCCCEEEeeeEEEecCCCCcCCchhhhcCCCCCCCCcccccchhhhccccCC
Confidence 999999999999999999999999999999999999999999999999999987543
Q ss_pred -----CCcCCCCCCCceEeeccccccchhHhHHHHHHHHhcCCC-cccChHHHHHHHHHHhcCCCCcccccCCCC-CCcc
Q 046127 228 -----NQCCPIHLKPCVARKEDNYFFALSKYQKLLEDTLTENPD-FVQPSFRLNEVQGWIKSGLRDFSISRASVD-WGIP 300 (345)
Q Consensus 228 -----~~~c~~~~~pve~r~~~~~f~~l~~~~~~L~e~l~~~~~-~~~P~~~~~~~~~wl~~gL~D~~ISR~~~~-WGIp 300 (345)
+++|++||+|+|+++++||||+|++|+++|.+++++++. ..+|+.+++.+.+||+++|+||||||+ .+ ||||
T Consensus 161 ~~~l~~p~~~~~~~~~e~~~~~~~f~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~d~~iSR~-~~~WGip 239 (530)
T TIGR00398 161 PTELINPRCKICGAKPELRDSEHYFFRLSAFEKELEEWIRKNPESGSPASNVKNKAQNWLKGGLKDLAITRD-LVYWGIP 239 (530)
T ss_pred HHHhcCCccccCCCcceEEecceEEEEhHHHHHHHHHHHHhCCccCCCcHHHHHHHHHHHhCCCCCccccCc-CCCCCee
Confidence 234777889999999999999999999999999986542 235777777888999999999999998 57 9999
Q ss_pred cCCCCCCcEEEecCchhHHHHhcCCCCCCCchhhhhhCcCCCC
Q 046127 301 VPNDNKQTIYVWFDALLGYISALSEDRDQPSLRTAVSSGWPAS 343 (345)
Q Consensus 301 vP~~~~~~iyVWfdal~gYls~~~~~~~~~~~~~~~~~~w~~~ 343 (345)
||+++++++||||||++||++++++... ..+.+.+|||++
T Consensus 240 vP~~~~~~~yvW~da~~~y~~~~~~~~~---~~~~~~~~w~~~ 279 (530)
T TIGR00398 240 VPNDPNKVVYVWFDALIGYISSLGILSG---DTEDWKKWWNND 279 (530)
T ss_pred CCCCCCcEEEEeecchHHhHhhhccccC---ChhhHHHhCCCC
Confidence 9999999999999999999999865432 235789999986
No 12
>PRK12268 methionyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=5.7e-58 Score=471.49 Aligned_cols=250 Identities=35% Similarity=0.600 Sum_probs=228.6
Q ss_pred CCCEEEEccCCCCCCcCchhHHHHH-HHHHHHHHHHHHcCCeEEEEcCCCCcChHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 046127 88 ADPFVLTTPLYYVNAPPHMGSAYTT-IAADAIARFQRLLGKKVIFITGTDEHGEKIAAAAADGGSSPSEHCDVVSQAYKT 166 (345)
Q Consensus 88 ~~~~~I~~~~PypnG~LHIGHar~~-i~~DvlaR~lr~~G~~V~~v~G~D~~G~~I~~~A~~~g~~p~~~~~~~~~~~~~ 166 (345)
.++++|++|||||||.|||||++++ +.+|+++||+|++|++|.+++|+|+||++|+.+|++.|++++++|+++.+.|++
T Consensus 2 ~~~~~i~~~~py~ng~~HiGH~~~~~~~~D~~~R~~r~~G~~v~~~~g~d~~g~~i~~~a~~~g~~~~~~~~~~~~~~~~ 81 (556)
T PRK12268 2 MMRILITSAWPYANGPLHLGHLAGSGLPADVFARYQRLKGNEVLFVSGSDEHGTPIELAAKKEGVTPQELADKYHEEHKE 81 (556)
T ss_pred CCcEEEecCCCCCCCCccccccccchhHHHHHHHHHHhcCCceEecCcCCCcccHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 3679999999999999999999997 999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhcCcccCccccCCChhhHHHHHHHHHHHHhCCCeeecccCcccccCCCCccchhhhhc-------------------
Q 046127 167 LWKDLDIAYDKFIRTTEPKHEAIVKEFYSSVLANGDIYKADYEGLYCVNCEEYKDEKELLE------------------- 227 (345)
Q Consensus 167 ~l~~lgI~~D~f~~T~~~~~~~~v~~~~~~L~~kG~iy~~~~~~~yc~~c~~~l~d~el~~------------------- 227 (345)
++++|||++|.|++|+++.|.+.++++|.+|+++|+||++++.++||+.|+++|++.++.+
T Consensus 82 ~~~~l~i~~d~~~~t~~~~~~~~~~~~~~~L~~~G~~y~~~~~~~~~~~~~~~l~~~~v~g~cp~c~~~~~~G~~ce~cg 161 (556)
T PRK12268 82 DFKKLGISYDLFTRTTSPNHHEVVQEFFLKLYENGYIYKKTIEQAYCPSDGRFLPDRYVEGTCPYCGYEGARGDQCDNCG 161 (556)
T ss_pred HHHHcCCcCCCCcCCCCHHHHHHHHHHHHHHHHCCCeEEeeeEEEecCCCCcCcCccceeccCCCCCCcccCCchhhhcc
Confidence 9999999999999999999999999999999999999999999999999999999988753
Q ss_pred ---------CCcCCCCCCCceEeeccccccchhHhHHHHHHHHhcCCCcccChHHHHHHHHHHhcCCCCcccccCCCCCC
Q 046127 228 ---------NQCCPIHLKPCVARKEDNYFFALSKYQKLLEDTLTENPDFVQPSFRLNEVQGWIKSGLRDFSISRASVDWG 298 (345)
Q Consensus 228 ---------~~~c~~~~~pve~r~~~~~f~~l~~~~~~L~e~l~~~~~~~~P~~~~~~~~~wl~~gL~D~~ISR~~~~WG 298 (345)
+++|.+|++++|+++++||||++++|+++|.+++++. .++|+..++.+.+||+++++||||||+ ..||
T Consensus 162 ~~~~~~~l~~p~~~~~~~~~e~~~~~qwF~~l~~~~~~l~~~~~~~--~~~p~~~~~~~~~~l~~~l~Dw~ISR~-~~WG 238 (556)
T PRK12268 162 ALLDPTDLINPRSKISGSTPEFRETEHFFLDLPAFAERLRAWIESS--GDWPPNVLNFTLNWLKEGLKPRAITRD-LDWG 238 (556)
T ss_pred ccCChHHhcCCccccCCCcCeEEecceEEEEhHHHHHHHHHHHhhc--cCCCHHHHHHHHHHHhCCCCCcCceee-CCCC
Confidence 1355667789999999999999999999999999853 468888999999999988999999998 5899
Q ss_pred cccC--CCCCCcEEEecCchhHHHHhcCCCCCCCchhhhhhCcC
Q 046127 299 IPVP--NDNKQTIYVWFDALLGYISALSEDRDQPSLRTAVSSGW 340 (345)
Q Consensus 299 IpvP--~~~~~~iyVWfdal~gYls~~~~~~~~~~~~~~~~~~w 340 (345)
|||| .++++++||||||++||+++++++.+.......+.+||
T Consensus 239 ipiP~~~~~~~~iyvW~da~~~y~~~~~~~~~~~g~~~~~~~~w 282 (556)
T PRK12268 239 IPVPWPGFEGKVFYVWFDAVIGYISASKEWAERTGDPEAWKEFW 282 (556)
T ss_pred eeCCCCCCCCcEEEEeehHhhHHHHHHHHHHHhcCCchHHHHHh
Confidence 9999 78899999999999999998776543211224577888
No 13
>cd00818 IleRS_core catalytic core domain of isoleucyl-tRNA synthetases. Isoleucine amino-acyl tRNA synthetases (IleRS) catalytic core domain . This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. IleRS has an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.
Probab=100.00 E-value=1.7e-51 Score=399.37 Aligned_cols=224 Identities=24% Similarity=0.373 Sum_probs=205.6
Q ss_pred CCEEEEccCCCCCCcCchhHHHHHHHHHHHHHHHHHcCCeEEEEcCCCCcChHHHHHHHhC-CCCH--------------
Q 046127 89 DPFVLTTPLYYVNAPPHMGSAYTTIAADAIARFQRLLGKKVIFITGTDEHGEKIAAAAADG-GSSP-------------- 153 (345)
Q Consensus 89 ~~~~I~~~~PypnG~LHIGHar~~i~~DvlaR~lr~~G~~V~~v~G~D~~G~~I~~~A~~~-g~~p-------------- 153 (345)
++|+|.+|||||||++||||+++++++|+++||+|++|++|.+++|+|+||++|+.+|++. |+++
T Consensus 1 ~~f~i~~~pP~vnG~lHiGHa~~~~~~Dvl~Ry~r~~G~~V~~~~g~D~hG~~ie~ka~k~lg~~~~~~~~~~~~~~~~~ 80 (338)
T cd00818 1 PEFVFHDGPPYANGLPHYGHALNKILKDIINRYKTMQGYYVPRRPGWDCHGLPIELKVEKELGISGKKDIEKMGIAEFNA 80 (338)
T ss_pred CCeEEecCCCCCCCCchHHHHHHHHHHHHHHHHHHhcCCccCCcCCcCCCCchhHHHHHHHhCCCCCcchhhcCHHHHHH
Confidence 4699999999999999999999999999999999999999999999999999999999886 7654
Q ss_pred --HHHHHHHHHHHHHHHhhcCc--ccCccccCCChhhHHHHHHHHHHHHhCCCeeecccCcccccCCCCccchhhhhcCC
Q 046127 154 --SEHCDVVSQAYKTLWKDLDI--AYDKFIRTTEPKHEAIVKEFYSSVLANGDIYKADYEGLYCVNCEEYKDEKELLENQ 229 (345)
Q Consensus 154 --~~~~~~~~~~~~~~l~~lgI--~~D~f~~T~~~~~~~~v~~~~~~L~~kG~iy~~~~~~~yc~~c~~~l~d~el~~~~ 229 (345)
+++++++.+.|+++|++||| ++|.+++|+++.|.+.++++|.+|+++|+||++++.++|
T Consensus 81 ~~~~~~~~~~~~~~~~~~~lgi~~~~~~~~~T~~~~~~~~v~~~f~~L~~~G~iY~~~~~v~~----------------- 143 (338)
T cd00818 81 KCREFALRYVDEQEEQFQRLGVWVDWENPYKTMDPEYMESVWWVFKQLHEKGLLYRGYKVVPW----------------- 143 (338)
T ss_pred HHHHHHHHHHHHHHHHHHHhCceecCCCCeECCCHHHHHHHHHHHHHHHHCCCEeccCCeeee-----------------
Confidence 68999999999999999999 566889999999999999999999999999999999999
Q ss_pred cCCCCCCCceEeeccccccchhHhHHHHHHHHhcCCCcccChHHHHHHHHHHhcCCCCcccccCCCCCCcccCC----CC
Q 046127 230 CCPIHLKPCVARKEDNYFFALSKYQKLLEDTLTENPDFVQPSFRLNEVQGWIKSGLRDFSISRASVDWGIPVPN----DN 305 (345)
Q Consensus 230 ~c~~~~~pve~r~~~~~f~~l~~~~~~L~e~l~~~~~~~~P~~~~~~~~~wl~~gL~D~~ISR~~~~WGIpvP~----~~ 305 (345)
|+++++++||||++++++++|.+++++. + +.|+.+++++.+||+ +|+||||||+ ..||||+|. ++
T Consensus 144 -------~v~~~~~~qwf~~l~~~~~~l~~~~~~~-~-~~P~~~~~~~~~~l~-~l~dw~iSR~-~~WGip~P~~~~~~~ 212 (338)
T cd00818 144 -------PLIYRATPQWFIRVTKIKDRLLEANDKV-N-WIPEWVKNRFGNWLE-NRRDWCISRQ-RYWGTPIPVWYCEDC 212 (338)
T ss_pred -------EEEEEecCeEEEEcHHHHHHHHHHHhcC-c-EECHHHHHHHHHHHh-cchhcceeee-cccCceeeEEEecCC
Confidence 8899999999999999999999999875 3 579999999999996 5999999997 699999995 33
Q ss_pred --------CCcEEEecCchhHHHHhcCCCCCCCchhhhhhCcCCCCC
Q 046127 306 --------KQTIYVWFDALLGYISALSEDRDQPSLRTAVSSGWPASL 344 (345)
Q Consensus 306 --------~~~iyVWfdal~gYls~~~~~~~~~~~~~~~~~~w~~~~ 344 (345)
++|+||||||+++|+++++...++ +.+..+||+++
T Consensus 213 ~~~~~~~~~~v~~vWfda~~~~~~~~~~~~~~----~~~~~~~p~d~ 255 (338)
T cd00818 213 GEVLVRRVPDVLDVWFDSGSMPYAQLHYPFEN----EDFEELFPADF 255 (338)
T ss_pred CeEEEecCCceEEEEEeCCCCHHHHcCCCCcc----hhhhccCCCeE
Confidence 889999999999999998765443 46889999874
No 14
>PRK13208 valS valyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=2.1e-51 Score=438.13 Aligned_cols=262 Identities=23% Similarity=0.380 Sum_probs=232.0
Q ss_pred cccCCCCCCCC-CCCCCEEEEccCCCCCCcCchhHHHHHHHHHHHHHHHHHcCCeEEEEcCCCCcChHHHHHHHh-CCCC
Q 046127 75 SYATNTDKSGT-EPADPFVLTTPLYYVNAPPHMGSAYTTIAADAIARFQRLLGKKVIFITGTDEHGEKIAAAAAD-GGSS 152 (345)
Q Consensus 75 ~~~~~~~~~~~-~~~~~~~I~~~~PypnG~LHIGHar~~i~~DvlaR~lr~~G~~V~~v~G~D~~G~~I~~~A~~-~g~~ 152 (345)
|.....|...+ .++++|+|+.|||||||+|||||+++++++|+++||+||+|++|.+++|+|+||+||+.+|++ .|++
T Consensus 23 W~~~~~f~~~~~~~~~~f~i~~ppPy~nG~lHiGH~~~~~~~D~~~R~~r~~G~~v~~~~G~D~~Glpie~~~ek~~g~~ 102 (800)
T PRK13208 23 WEEEGTYKFDPDERKPVYSIDTPPPTVSGSLHIGHVFSYTHTDFIARYQRMRGYNVFFPQGWDDNGLPTERKVEKYYGIR 102 (800)
T ss_pred HHHCCCcccccccCCCcEEEecCcCCCCCCccHHHHHhHHHHHHHHHHHHcCCCcccCCCCcCCCcchHHHHHHHHhCCC
Confidence 44444453222 246889999999999999999999999999999999999999999999999999999999998 5887
Q ss_pred HH------------HHHHHHHHHHHHHHhhcCcccC--ccccCCChhhHHHHHHHHHHHHhCCCeeecccCcccccCCCC
Q 046127 153 PS------------EHCDVVSQAYKTLWKDLDIAYD--KFIRTTEPKHEAIVKEFYSSVLANGDIYKADYEGLYCVNCEE 218 (345)
Q Consensus 153 p~------------~~~~~~~~~~~~~l~~lgI~~D--~f~~T~~~~~~~~v~~~~~~L~~kG~iy~~~~~~~yc~~c~~ 218 (345)
++ ++++++.+.|+++|++||+++| ++++|+++.|.+.++++|.+|+++|+||++.++++|||.|++
T Consensus 103 ~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~lg~s~Dw~~~~~T~d~~~~~~v~~~f~~L~~~Gliy~~~~~v~wcp~~~t 182 (800)
T PRK13208 103 KDDISREEFIELCRELTDEDEKKFRELWRRLGLSVDWSLEYQTISPEYRRISQKSFLDLYKKGLIYRAEAPVLWCPRCET 182 (800)
T ss_pred cccCCHHHHHHHHHHHHHHHHHHHHHHHHHhCeeeccCCCcccCCHHHHHHHHHHHHHHHHCCCeeecCcccccCCCCCC
Confidence 76 5999999999999999999988 889999999999999999999999999999999999999999
Q ss_pred ccchhhhh------------------------------------------------------------------------
Q 046127 219 YKDEKELL------------------------------------------------------------------------ 226 (345)
Q Consensus 219 ~l~d~el~------------------------------------------------------------------------ 226 (345)
+|+|.|+.
T Consensus 183 ~Lsd~ev~~~~~~~~~~~ikf~~~~~~~l~v~TtrPeTl~g~~ai~v~p~~~~~~~l~g~~~~~P~~~~~ipii~~~~V~ 262 (800)
T PRK13208 183 AIAQAEVEYREREGKLNYIKFPVEDGEEIEIATTRPELLPACVAVVVHPDDERYKHLVGKTAIVPLFGVEVPILADPLVD 262 (800)
T ss_pred ccchhhhccccccceEEEEEEEecCCCEEEEEeCCcchhhhCeEEEECCCchHHHHhcCCEEEcCCCCCcceEECCCccC
Confidence 99998662
Q ss_pred ----------------------------------------------------------------------------cCCc
Q 046127 227 ----------------------------------------------------------------------------ENQC 230 (345)
Q Consensus 227 ----------------------------------------------------------------------------~~~~ 230 (345)
..++
T Consensus 263 ~~~GTG~V~~~p~hd~~D~~~~~~~~l~~~~~i~~~G~~~~~~g~~~G~~~~~a~~~i~~~L~~~g~~~~~~~~~~~~p~ 342 (800)
T PRK13208 263 PDFGTGAVMICTFGDKTDVTWWRELNLPTRIIIDEDGRMTEAAGKLAGLTIEEARKKIVEDLKSGGLLGKQEPIKHNVKF 342 (800)
T ss_pred CCCCcceEEeCCCCCHHHHHHHHHcCCCcccccCCCceEecCCcccCCCCHHHHHHHHHHHHHhCCCeeceeeeeccCCc
Confidence 0157
Q ss_pred CCCCCCCceEeeccccccchhHhHHHHHHHHhcCCCcccChHHHHHHHHHHhcCCC-CcccccCCCCCCcccCC----C-
Q 046127 231 CPIHLKPCVARKEDNYFFALSKYQKLLEDTLTENPDFVQPSFRLNEVQGWIKSGLR-DFSISRASVDWGIPVPN----D- 304 (345)
Q Consensus 231 c~~~~~pve~r~~~~~f~~l~~~~~~L~e~l~~~~~~~~P~~~~~~~~~wl~~gL~-D~~ISR~~~~WGIpvP~----~- 304 (345)
|++||+|++.+.++||||+++++++++.+++++. .+.|+..++++.+||++ ++ ||||||| .+||+|||. +
T Consensus 343 ~~r~~~~v~~~~~~qwfl~~~~~~~~~~~~~~~~--~~~P~~~~~~~~~~l~~-~~~DW~ISRq-r~WG~pIP~~~~~~~ 418 (800)
T PRK13208 343 CERCDTPLEILVTRQWFIKVLDLKEELLERGKEI--NWYPEHMRVRLENWIEG-LNWDWCISRQ-RYFGTPIPVWYCKDC 418 (800)
T ss_pred cCCCCCEEEEeccceeeEeCHHHHHHHHHhhcCc--EEECHHHHHHHHHHHHh-cCCCceeeec-cccCCcceEEEeCCC
Confidence 9999999999999999999999999999999875 47899999999999985 66 9999999 599999993 0
Q ss_pred -----------------------------------CCCcEEEecCchhHHHHhcCCCCCCCchhhhhhCcCCCCC
Q 046127 305 -----------------------------------NKQTIYVWFDALLGYISALSEDRDQPSLRTAVSSGWPASL 344 (345)
Q Consensus 305 -----------------------------------~~~~iyVWfdal~gYls~~~~~~~~~~~~~~~~~~w~~~~ 344 (345)
+.+|++||||+.+.|++.++++.+. +.+..|||+|+
T Consensus 419 g~~~~~~~~~l~~~~~~d~~~~~~~~~~g~~~~~~~~dvlD~WfdS~~~~~~~~~~~~~~----~~~~~~~P~d~ 489 (800)
T PRK13208 419 GHPILPDEEDLPVDPTKDEPPGYKCPQCGSPGFEGETDVMDTWATSSITPLIVTGWERDE----DLFEKVFPMDL 489 (800)
T ss_pred CCeecCchhhhccCchhhccccccccccCCcCEEecCCEEEEEEeCCchHHHHhCCCCCh----hhhhhcCCceE
Confidence 1268999999999999988876542 56889999874
No 15
>TIGR00422 valS valyl-tRNA synthetase. The valyl-tRNA synthetase (ValS) is a class I amino acyl-tRNA ligase and is particularly closely related to the isoleucyl tRNA synthetase.
Probab=100.00 E-value=5e-51 Score=438.19 Aligned_cols=265 Identities=20% Similarity=0.286 Sum_probs=230.6
Q ss_pred ccccCCCCCCC-CCCCCCEEEEccCCCCCCcCchhHHHHHHHHHHHHHHHHHcCCeEEEEcCCCCcChHHHHHHHh----
Q 046127 74 CSYATNTDKSG-TEPADPFVLTTPLYYVNAPPHMGSAYTTIAADAIARFQRLLGKKVIFITGTDEHGEKIAAAAAD---- 148 (345)
Q Consensus 74 ~~~~~~~~~~~-~~~~~~~~I~~~~PypnG~LHIGHar~~i~~DvlaR~lr~~G~~V~~v~G~D~~G~~I~~~A~~---- 148 (345)
.|.....|... ..++++|+|+.||||+||.|||||+++++++|+++||+||+|++|++++|+|+||+||+..+++
T Consensus 17 ~W~~~~~f~~~~~~~~~~f~i~~ppPy~nG~lHiGH~~~~~~~D~~~Ry~rm~G~~vl~~~G~D~~Glp~e~~vek~~~~ 96 (861)
T TIGR00422 17 KWEKSGFFKPDGNSNKPPFCIDIPPPNVTGSLHIGHALNWSIQDIIARYKRMKGYNVLWLPGTDHAGIATQVKVEKKLGA 96 (861)
T ss_pred HHHHCCCcccCcccCCCeEEEEeCCCCCCCCCcHHHhHHHHHHHHHHHHHHhcCCcccCCCCcCcCCCcHHHHHHHHhcc
Confidence 35555555332 2356889999999999999999999999999999999999999999999999999999988875
Q ss_pred CCCCH------------HHHHHHHHHHHHHHHhhcCcccC--ccccCCChhhHHHHHHHHHHHHhCCCeeecccCccccc
Q 046127 149 GGSSP------------SEHCDVVSQAYKTLWKDLDIAYD--KFIRTTEPKHEAIVKEFYSSVLANGDIYKADYEGLYCV 214 (345)
Q Consensus 149 ~g~~p------------~~~~~~~~~~~~~~l~~lgI~~D--~f~~T~~~~~~~~v~~~~~~L~~kG~iy~~~~~~~yc~ 214 (345)
.|.++ .++++++.+.++++|++||+++| +.+.|+|+.|.+.|+++|.+|+++|+||++.++++|||
T Consensus 97 ~g~~~~~~~~e~f~~~~~~~~~~~~~~~~~~~~~lG~s~Dw~r~~~T~d~~~~~~v~~~F~~L~~~GlIy~~~~~v~wcp 176 (861)
T TIGR00422 97 EGKTKHDLGREEFREKIWEWKEESGGTIKNQIKRLGASLDWSRERFTMDEGLSKAVKEAFVRLYEKGLIYRGEYLVNWDP 176 (861)
T ss_pred cCCchhhCCHHHHHHHHHHHHHHHHHHHHHHHHHhCeeeecCCCcCcCCHHHHHHHHHHHHHHHHCCCeeecCcccccCC
Confidence 35555 36789999999999999999988 44669999999999999999999999999999999999
Q ss_pred CCCCccchhhhh--------------------------------------------------------------------
Q 046127 215 NCEEYKDEKELL-------------------------------------------------------------------- 226 (345)
Q Consensus 215 ~c~~~l~d~el~-------------------------------------------------------------------- 226 (345)
.|+++|++.|+.
T Consensus 177 ~~~t~lsd~Ev~~~~~~~~~~~i~f~~~~~~~~~l~vaTtrPeTl~~~~av~V~P~~~ry~~l~g~~~~~P~~~~~ipii 256 (861)
T TIGR00422 177 KLNTAISDIEVEYKEVKGKLYYIRYPLANGSKDYLVVATTRPETMFGDTAVAVHPEDERYKHLIGKKVILPLTGRKIPII 256 (861)
T ss_pred CCCCcchHhHhhcccccceEEEEEEEecCCCCCEEEEEeCCcchhhhCeEEEECCCchHHHHhcCCEEEcCCCCCcceee
Confidence 999999887620
Q ss_pred --------------------------------------------------------------------------------
Q 046127 227 -------------------------------------------------------------------------------- 226 (345)
Q Consensus 227 -------------------------------------------------------------------------------- 226 (345)
T Consensus 257 ~~~~V~~~~GTG~V~~~Pah~~~D~~~~~~~~l~~~~~id~~G~~~~~~~~~~G~~~~~ar~~i~~~L~~~g~l~~~~~~ 336 (861)
T TIGR00422 257 ADEYVDMEFGTGAVKVTPAHDFNDYEWGKRHNLEFINILDEDGLLNENAGKYQGLTRFEARKKIVEDLKEEGLLVKIEPH 336 (861)
T ss_pred ecCCCCcccCCCceEecCCCChHHHHHHHHcCCCccceeCCCCeEcCCCcccCCcCHHHhHHHHHHHHHhCCCeeeeeee
Confidence
Q ss_pred --cCCcCCCCCCCceEeeccccccchhHhHHHHHHHHhcCCCcccChHHHHHHHHHHhcCCCCcccccCCCCCCcccCC-
Q 046127 227 --ENQCCPIHLKPCVARKEDNYFFALSKYQKLLEDTLTENPDFVQPSFRLNEVQGWIKSGLRDFSISRASVDWGIPVPN- 303 (345)
Q Consensus 227 --~~~~c~~~~~pve~r~~~~~f~~l~~~~~~L~e~l~~~~~~~~P~~~~~~~~~wl~~gL~D~~ISR~~~~WGIpvP~- 303 (345)
..++|++||.|+|.+.++||||+++++++++.++++++...+.|+.+++.+.+||+ +|+||||||| .+||+|||.
T Consensus 337 ~~~~p~~~R~g~~ve~~~~~qWFi~~~~~~~~~~~~~~~~~i~~~P~~~~~~~~~wl~-~l~DW~ISRq-~~WG~piP~w 414 (861)
T TIGR00422 337 THNVGTCWRSGTVVEPLLSKQWFVKVEKLADKALEAAEEGEIKFVPKRMEKRYLNWLR-NIKDWCISRQ-LIWGHRIPVW 414 (861)
T ss_pred eccCCEeCCCCCEEEEEecCcceEecHHHHHHHHHHhhcCCeEEEChHHHHHHHHHHh-ccccceeeee-cccCCcceEE
Confidence 12469999999999999999999999999999999854445789999999999997 5999999998 699999995
Q ss_pred --CC----------------------------CCcEEEecCchhHHHHhcCCCCCCCchhhhhhCcCCCCC
Q 046127 304 --DN----------------------------KQTIYVWFDALLGYISALSEDRDQPSLRTAVSSGWPASL 344 (345)
Q Consensus 304 --~~----------------------------~~~iyVWfdal~gYls~~~~~~~~~~~~~~~~~~w~~~~ 344 (345)
+. ..|+||||||.++|+++++++.+. ++|..|||+|+
T Consensus 415 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~dVlDtWFdS~l~~~s~~g~p~~~----~~~~~~~P~d~ 481 (861)
T TIGR00422 415 YCKECGEVYVAKEEPLPDDKTNTGPSVELEQDTDVLDTWFSSSLWPFSTLGWPDET----KDLKKFYPTDL 481 (861)
T ss_pred EECCCCcEEeccchHHhhhhhccCCcccEEECCCcccceeccchHHHHHhCCCCCh----HHHhhcCCcce
Confidence 21 368888999999999999987543 57899999874
No 16
>PRK14900 valS valyl-tRNA synthetase; Provisional
Probab=100.00 E-value=8.3e-51 Score=441.48 Aligned_cols=253 Identities=19% Similarity=0.314 Sum_probs=225.1
Q ss_pred CCCCCEEEEccCCCCCCcCchhHHHHHHHHHHHHHHHHHcCCeEEEEcCCCCcChHHHHHHHh-----CCCCH-------
Q 046127 86 EPADPFVLTTPLYYVNAPPHMGSAYTTIAADAIARFQRLLGKKVIFITGTDEHGEKIAAAAAD-----GGSSP------- 153 (345)
Q Consensus 86 ~~~~~~~I~~~~PypnG~LHIGHar~~i~~DvlaR~lr~~G~~V~~v~G~D~~G~~I~~~A~~-----~g~~p------- 153 (345)
.++++|+|+.||||+||.|||||++++++.|+++||+||+|++|++++|+|+||++++..+++ .|.++
T Consensus 45 ~~~~~f~i~~pPP~~nG~lHiGH~~~~~~~Di~~Ry~rm~G~~vl~~~G~D~~Glp~e~~ve~~l~~~~~~~~~~~~~e~ 124 (1052)
T PRK14900 45 RTRPPFSIVLPPPNVTGSLHLGHALTATLQDVLIRWKRMSGFNTLWLPGTDHAGIATQMIVEKELKKTEKKSRHDLGREA 124 (1052)
T ss_pred CCCCCEEEecCCCCCCCcchHHHHHhhHHHHHHHHHHHhcCCcccCCCCCCccchHHHHHHHHHhhhccCCChhhCCHHH
Confidence 356889999999999999999999999999999999999999999999999999999887764 23333
Q ss_pred -----HHHHHHHHHHHHHHHhhcCcccC--ccccCCChhhHHHHHHHHHHHHhCCCeeecccCcccccCCCCccchhhhh
Q 046127 154 -----SEHCDVVSQAYKTLWKDLDIAYD--KFIRTTEPKHEAIVKEFYSSVLANGDIYKADYEGLYCVNCEEYKDEKELL 226 (345)
Q Consensus 154 -----~~~~~~~~~~~~~~l~~lgI~~D--~f~~T~~~~~~~~v~~~~~~L~~kG~iy~~~~~~~yc~~c~~~l~d~el~ 226 (345)
.++++++.+.|+++|++||+++| +.+.|+++.|...++++|.+|+++|+||++.++++|||.|+++|++.|+.
T Consensus 125 f~~~~~~~~~~~~~~~~~~~~~lG~s~Dw~~~~~T~d~~~~~~v~~~F~~L~~~Gliyr~~~~v~wcp~~~T~Lsd~Ev~ 204 (1052)
T PRK14900 125 FLERVWAWKEQYGSRIGEQHKALGASLDWQRERFTMDEGLSRAVREVFVRLHEEGLIYREKKLINWCPDCRTALSDLEVE 204 (1052)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhchheecCCCcCcCCHHHHHHHHHHHHHHHHCCCEEeccceeccCCCCCCCccHHHhc
Confidence 24778999999999999999887 56679999999999999999999999999999999999999999874310
Q ss_pred --------------------------------------------------------------------------------
Q 046127 227 -------------------------------------------------------------------------------- 226 (345)
Q Consensus 227 -------------------------------------------------------------------------------- 226 (345)
T Consensus 205 ~~e~~~~~~~~i~f~l~~~~~~l~vaTTrPeTl~~~~avaV~P~~~~y~~L~G~~~~~Pl~~~~ipIi~d~~~vd~~~GT 284 (1052)
T PRK14900 205 HEEAHQGELWSFAYPLADGSGEIVVATTRPETMLGDTAVAVHPLDPRYMALHGKKVRHPITGRTFPIVADAILVDPKFGT 284 (1052)
T ss_pred ccCCCCCeEEEEEEEecCCCcEEEEEECchhhhhcceeEEECCCcHHHHHhcCCEEECCCCCCeeEEEecccccCcCCCC
Confidence
Q ss_pred -----------------------------------------------------------------------cCCcCCCCC
Q 046127 227 -----------------------------------------------------------------------ENQCCPIHL 235 (345)
Q Consensus 227 -----------------------------------------------------------------------~~~~c~~~~ 235 (345)
..++|++|+
T Consensus 285 G~V~~~Pahd~~D~~~~~~~~L~~~~~id~~G~~~~~~~~~~Gl~~~ear~~Ii~~L~~~g~l~~~~~~~h~~~~c~R~~ 364 (1052)
T PRK14900 285 GAVKVTPAHDFNDFEVGKRHGLEMITVIGPDGRMTAEAGPLAGLDRFEARKEVKRLLAEQGLDRGAKPHVLPLGRCQRSA 364 (1052)
T ss_pred CeEEecCCCChhHHHHHHHcCCCccceECCCcEEecCCcccCCcCHHHHHHHHHHHHHhCCCeecceeeeccCceeCCCC
Confidence 146799999
Q ss_pred CCceEeeccccccchhHhHHHHHHHHhcCCCcccChHHHHHHHHHHhcCCCCcccccCCCCCCcccCCC-----------
Q 046127 236 KPCVARKEDNYFFALSKYQKLLEDTLTENPDFVQPSFRLNEVQGWIKSGLRDFSISRASVDWGIPVPND----------- 304 (345)
Q Consensus 236 ~pve~r~~~~~f~~l~~~~~~L~e~l~~~~~~~~P~~~~~~~~~wl~~gL~D~~ISR~~~~WGIpvP~~----------- 304 (345)
+|++.+.++||||++++|+++++++++++...++|+.+++.+.+||+ +|+||||||| .+||+|||..
T Consensus 365 ~~ie~~~s~qWFi~l~~~k~~~~~~v~~~~~~~~P~~~~~~~~~wl~-~l~DW~ISRq-r~WG~PIP~w~~~~~~~~v~~ 442 (1052)
T PRK14900 365 TILEPLLSDQWYVRIEPLARPAIEAVEQGRTRFIPEQWTNTYMAWMR-NIHDWCISRQ-LWWGHQIPAWYCPDGHVTVAR 442 (1052)
T ss_pred ceEEEEeccceeeehHHHHHHHHHHHhcCCcEEEChHHHHHHHHHHh-cCccceEEee-cCCCceeCeEEcCCCcEEecc
Confidence 99999999999999999999999999875557899999999999997 6999999998 7999999952
Q ss_pred ----------------CCCcEEEecCchhHHHHhcCCCCCCCchhhhhhCcCCCCC
Q 046127 305 ----------------NKQTIYVWFDALLGYISALSEDRDQPSLRTAVSSGWPASL 344 (345)
Q Consensus 305 ----------------~~~~iyVWfdal~gYls~~~~~~~~~~~~~~~~~~w~~~~ 344 (345)
+.+|||||||++++|++.++++.+. +.+.+|||+|+
T Consensus 443 ~~~~~~~~~~~~~~~~~~dVlDvWFdS~l~y~s~~g~p~~~----~~~~~~~P~d~ 494 (1052)
T PRK14900 443 ETPEACSTCGKAELRQDEDVLDTWFSSGLWPFSTMGWPEQT----DTLRTFYPTSV 494 (1052)
T ss_pred cccccccccCccceecCCceEEEEEcCChHHHHHHcCCCch----HHHHhhCCchh
Confidence 3489999999999999999976542 56899999874
No 17
>PRK05729 valS valyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=9.2e-50 Score=428.61 Aligned_cols=264 Identities=18% Similarity=0.266 Sum_probs=226.8
Q ss_pred cccCCCCCCCCCCCCCEEEEccCCCCCCcCchhHHHHHHHHHHHHHHHHHcCCeEEEEcCCCCcChHHHHHHHh----CC
Q 046127 75 SYATNTDKSGTEPADPFVLTTPLYYVNAPPHMGSAYTTIAADAIARFQRLLGKKVIFITGTDEHGEKIAAAAAD----GG 150 (345)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~I~~~~PypnG~LHIGHar~~i~~DvlaR~lr~~G~~V~~v~G~D~~G~~I~~~A~~----~g 150 (345)
|....-|...+..+++|+|+.||||+||.|||||++++++.|+++||+||+|++|++++|+|+||++++.+.++ .|
T Consensus 22 W~~~~~f~~~~~~~~~f~i~~ppP~~~G~lHiGHa~~~~~~D~~~Ry~rm~G~~vl~~~G~D~~Gi~~e~~ve~~l~~~g 101 (874)
T PRK05729 22 WEEKGYFKPDDNSKKPFSIVIPPPNVTGSLHMGHALNNTLQDILIRYKRMQGYNTLWLPGTDHAGIATQMVVERQLAAEG 101 (874)
T ss_pred HHHCCCcccCcCCCCCEEEecCCCCCCCcchHHHHHHHHHHHHHHHHHHhCCCcccCCCCCCccchhhHHHHHHHHHhcC
Confidence 44444453322345669999999999999999999999999999999999999999999999999987776544 36
Q ss_pred CCHHH------------HHHHHHHHHHHHHhhcCcccC--ccccCCChhhHHHHHHHHHHHHhCCCeeecccCcccccCC
Q 046127 151 SSPSE------------HCDVVSQAYKTLWKDLDIAYD--KFIRTTEPKHEAIVKEFYSSVLANGDIYKADYEGLYCVNC 216 (345)
Q Consensus 151 ~~p~~------------~~~~~~~~~~~~l~~lgI~~D--~f~~T~~~~~~~~v~~~~~~L~~kG~iy~~~~~~~yc~~c 216 (345)
+++.+ +++++.+.|+++|++||+++| +.+.|+|+.|...|+++|.+|+++|+||++.++++|||.|
T Consensus 102 ~~~~~~~re~f~~~~~~w~~~~~~~~~~~~~~lG~s~Dw~r~~~T~d~~~~~~v~~~F~~L~~~GlIyr~~~~v~wcp~~ 181 (874)
T PRK05729 102 KSRHDLGREKFLEKVWEWKEESGGTITNQLRRLGASCDWSRERFTMDEGLSKAVREVFVRLYEKGLIYRGKRLVNWDPKL 181 (874)
T ss_pred CChHHCCHHHHHHHHHHHHHHHHHHHHHHHHHhCcceecCCCcccCCHHHHHHHHHHHHHHHHCCCEeecCcccccCCCC
Confidence 66653 589999999999999999887 5577999999999999999999999999999999999999
Q ss_pred CCccchhhhh----------------------------------------------------------------------
Q 046127 217 EEYKDEKELL---------------------------------------------------------------------- 226 (345)
Q Consensus 217 ~~~l~d~el~---------------------------------------------------------------------- 226 (345)
+++|+|.|+.
T Consensus 182 ~talsd~EV~~~~~~~~~~~i~f~~~~~~~~l~vaTtrPeTl~~~~avaV~P~d~ry~~l~g~~~~~P~~~~~ipii~~~ 261 (874)
T PRK05729 182 QTALSDLEVEYKEVKGKLWHIRYPLADGSDYLVVATTRPETMLGDTAVAVNPEDERYKHLIGKTVILPLVGREIPIIADE 261 (874)
T ss_pred CCcchhhhcccccccceEEEEEEEecCCCcEEEEEeCCcchhhcCeeEeECCCccHHHHhcCCEEECCCCCCeeeEecCc
Confidence 9999986653
Q ss_pred -------------------------------------------------------------------------------c
Q 046127 227 -------------------------------------------------------------------------------E 227 (345)
Q Consensus 227 -------------------------------------------------------------------------------~ 227 (345)
.
T Consensus 262 ~V~~~~GTG~V~~~Pah~~~D~~~~~~~~l~~~~~i~~~G~~~~~~~~~~G~~~~~ar~~i~~~L~~~g~l~~~~~~~~~ 341 (874)
T PRK05729 262 YVDPEFGTGAVKITPAHDPNDFEVGKRHNLPMINIMDEDGTINENPGEYQGLDRFEARKAIVADLEELGLLVKIEPHTHS 341 (874)
T ss_pred cCCCCCCCcceEecCCCCHHHHHHHHHcCCCcccccCCCCeEcCCCcccCCCCHHHHHHHHHHHHHhCCCeeeeEEeecc
Confidence 0
Q ss_pred CCcCCCCCCCceEeeccccccchhHhHHHHHHHHhcCCCcccChHHHHHHHHHHhcCCCCcccccCCCCCCcccCC--CC
Q 046127 228 NQCCPIHLKPCVARKEDNYFFALSKYQKLLEDTLTENPDFVQPSFRLNEVQGWIKSGLRDFSISRASVDWGIPVPN--DN 305 (345)
Q Consensus 228 ~~~c~~~~~pve~r~~~~~f~~l~~~~~~L~e~l~~~~~~~~P~~~~~~~~~wl~~gL~D~~ISR~~~~WGIpvP~--~~ 305 (345)
.++|++||+|+|.+.++||||+++++++++.++++++...++|+..++.+.+||+ +++||||||| .+||+|||. .+
T Consensus 342 ~p~~~R~~~~i~~~~~~QWFi~~~~~~~~~~~~v~~~~i~~~P~~~~~~~~~wl~-~l~DWcISRq-~~WG~pIP~~~~~ 419 (874)
T PRK05729 342 VGHSDRSGVVIEPYLSDQWFVKMKPLAKPALEAVENGEIKFVPERWEKTYFHWME-NIQDWCISRQ-LWWGHRIPAWYDE 419 (874)
T ss_pred CCeeCCCCceEEEEecCcceEehHHHHHHHHHHHhcCCcEEEChHHHHHHHHHHh-cCccceeeee-cccCCcccEEEeC
Confidence 3569999999999999999999999999999999865556899999999999997 5999999998 799999992 11
Q ss_pred ----------------------CCcEEEecCchhHHHHhcCCCCCCCchhhhhhCcCCCCC
Q 046127 306 ----------------------KQTIYVWFDALLGYISALSEDRDQPSLRTAVSSGWPASL 344 (345)
Q Consensus 306 ----------------------~~~iyVWfdal~gYls~~~~~~~~~~~~~~~~~~w~~~~ 344 (345)
..|++||||+.+.|+++++++.+. +.+..|||+|+
T Consensus 420 ~~~~~v~~~~~~~~~~~~~~~~~DvlDtWfsS~l~~~~~lgwp~~~----~~~~~~~P~d~ 476 (874)
T PRK05729 420 DGEVYVGREEPEAREKALLTQDEDVLDTWFSSALWPFSTLGWPEKT----EDLKRFYPTSV 476 (874)
T ss_pred CCcEEeCCcccccccccCeEeCCceecceecCCccHHHHhCCCCCc----HHHHhcCCccc
Confidence 236667888899999999887542 66889999884
No 18
>PLN02943 aminoacyl-tRNA ligase
Probab=100.00 E-value=8.9e-49 Score=422.70 Aligned_cols=265 Identities=19% Similarity=0.264 Sum_probs=229.9
Q ss_pred cccCCCCCCCC-CCCCCEEEEccCCCCCCcCchhHHHHHHHHHHHHHHHHHcCCeEEEEcCCCCcChHHHHHHHh----C
Q 046127 75 SYATNTDKSGT-EPADPFVLTTPLYYVNAPPHMGSAYTTIAADAIARFQRLLGKKVIFITGTDEHGEKIAAAAAD----G 149 (345)
Q Consensus 75 ~~~~~~~~~~~-~~~~~~~I~~~~PypnG~LHIGHar~~i~~DvlaR~lr~~G~~V~~v~G~D~~G~~I~~~A~~----~ 149 (345)
|....-|...+ .++++|+|+.||||+||.|||||++++++.|+++||+||+|++|++++|+|+||++++.++++ .
T Consensus 73 W~~~~~f~~~~~~~~~~f~i~~pPP~~tG~lHiGHa~~~~~~D~~~Ry~rm~G~~vl~~~G~D~~Gl~~e~~vek~l~~~ 152 (958)
T PLN02943 73 WESQGYFKPNFDRGGDPFVIPMPPPNVTGSLHMGHAMFVTLEDIMVRYNRMKGRPTLWIPGTDHAGIATQLVVEKMLASE 152 (958)
T ss_pred HHHCCCcccCcccCCCCEEEecCCCCCCCchhHHHHHHHHHHHHHHHHHHhcCCeeecCCCCCcccchhHHHHHHHHHHc
Confidence 55555554322 356779999999999999999999999999999999999999999999999999999886654 3
Q ss_pred CCCH------------HHHHHHHHHHHHHHHhhcCcccC--ccccCCChhhHHHHHHHHHHHHhCCCeeecccCcccccC
Q 046127 150 GSSP------------SEHCDVVSQAYKTLWKDLDIAYD--KFIRTTEPKHEAIVKEFYSSVLANGDIYKADYEGLYCVN 215 (345)
Q Consensus 150 g~~p------------~~~~~~~~~~~~~~l~~lgI~~D--~f~~T~~~~~~~~v~~~~~~L~~kG~iy~~~~~~~yc~~ 215 (345)
|+++ .++++++.+.|+++|++||+++| +.+.|+++.|...++++|.+|+++|+||++.++++|||.
T Consensus 153 ~~~~~~~~re~f~~~~~~~~~~~~~~~~~~~~~lG~s~Dw~~~~~T~d~~~~~~v~~~F~~l~~~Gliyr~~~~V~wcp~ 232 (958)
T PLN02943 153 GIKRTDLGRDEFTKRVWEWKEKYGGTITNQIKRLGASCDWSRERFTLDEQLSRAVVEAFVRLHEKGLIYQGSYMVNWSPN 232 (958)
T ss_pred CCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHhCcceecCCCcccCCHHHHHHHHHHHHHHHHCCCEEecCceeccCCC
Confidence 5544 35668889999999999999877 678899999999999999999999999999999999999
Q ss_pred CCCccchhhhh---------------------------------------------------------------------
Q 046127 216 CEEYKDEKELL--------------------------------------------------------------------- 226 (345)
Q Consensus 216 c~~~l~d~el~--------------------------------------------------------------------- 226 (345)
|+|.|++.|+.
T Consensus 233 ~~Tals~~Evey~e~~~~~~~i~f~l~~~~~~~l~vaTTrPeTl~~~~avavnP~d~ry~~l~g~~~~~Pl~~~~~ipii 312 (958)
T PLN02943 233 LQTAVSDLEVEYSEEPGTLYYIKYRVAGGSEDFLTIATTRPETLFGDVAIAVNPEDDRYSKYIGKMAIVPMTYGRHVPII 312 (958)
T ss_pred CCCCcCHHHhhcccccccEEEEEEEEcCCCCCEEEEEeCChhhhhcceEEEECCCCHHHHHHcCCEEECCCcCCCeeeEE
Confidence 99999874310
Q ss_pred ------------------------------------------------------------------------------cC
Q 046127 227 ------------------------------------------------------------------------------EN 228 (345)
Q Consensus 227 ------------------------------------------------------------------------------~~ 228 (345)
..
T Consensus 313 ~~~~V~~~~GTG~V~~~Pahd~~D~~~~~~~~L~~~~~id~~G~~~~~~g~~~~ear~~iv~~L~~~g~l~~~e~~~~~~ 392 (958)
T PLN02943 313 ADRYVDKDFGTGVLKISPGHDHNDYLLARKLGLPILNVMNKDGTLNEVAGLYWFEAREKLWSDLEETGLAVKKEPHTLRV 392 (958)
T ss_pred ecCcccCCCCCceEEeCCCCChHHHHHHHHcCCCceeeeCCCceeeccCCccHHHHHHHHHHHHHHCCCeeeeeeeecCC
Confidence 03
Q ss_pred CcCCCCCCCceEeeccccccchhHhHHHHHHHHhcCCCcccChHHHHHHHHHHhcCCCCcccccCCCCCCcccCC-----
Q 046127 229 QCCPIHLKPCVARKEDNYFFALSKYQKLLEDTLTENPDFVQPSFRLNEVQGWIKSGLRDFSISRASVDWGIPVPN----- 303 (345)
Q Consensus 229 ~~c~~~~~pve~r~~~~~f~~l~~~~~~L~e~l~~~~~~~~P~~~~~~~~~wl~~gL~D~~ISR~~~~WGIpvP~----- 303 (345)
++|++|++|+|.+.++|||++++++++++.++++++...+.|+..++.+.+||+ +++||||||| .+||+|||.
T Consensus 393 p~c~R~~~~Ie~~~~~QWFi~~~~l~~~~l~~v~~~~i~~~P~~~~~~~~~wl~-~l~DWcISRQ-r~WG~pIP~w~~~~ 470 (958)
T PLN02943 393 PRSQRGGEVIEPLVSKQWFVTMEPLAEKALKAVENGELTIIPERFEKIYNHWLS-NIKDWCISRQ-LWWGHRIPVWYIVG 470 (958)
T ss_pred CeeCCCCcEeEEEeccceeEEHHHHHHHHHHHHhcCCcEEEChHHHHHHHHHHh-cCccceEEEe-cCCCCccCceeccc
Confidence 569999999999999999999999999999999865456899999999999997 7999999999 799999994
Q ss_pred -C------------------------------CCCcEEEecCchhHHHHhcCCCCCCCchhhhhhCcCCCCC
Q 046127 304 -D------------------------------NKQTIYVWFDALLGYISALSEDRDQPSLRTAVSSGWPASL 344 (345)
Q Consensus 304 -~------------------------------~~~~iyVWfdal~gYls~~~~~~~~~~~~~~~~~~w~~~~ 344 (345)
+ +.+|+|||||+.+.|++.++++... .+.+..|||+|+
T Consensus 471 ~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~DVlDtWFdS~l~p~s~lgwp~~~---~~~~~~~yP~dl 539 (958)
T PLN02943 471 KDCEEDYIVARSAEEALEKAREKYGKDVEIYQDPDVLDTWFSSALWPFSTLGWPDVS---AEDFKKFYPTTV 539 (958)
T ss_pred cCCCceEEecCcHHHHHHHhhhhcCCchheeecCceEEEEEcCccchHHhcCCCccC---hHHHhccCCCeE
Confidence 1 3589999999999999999976421 267889999874
No 19
>cd00668 Ile_Leu_Val_MetRS_core catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases. Catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases. These class I enzymes are all monomers. However, in some species, MetRS functions as a homodimer, as a result of an additional C-terminal domain. These enzymes aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. Enzymes in this subfamily share an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids. MetRS has a significantly shorter insertion, which lacks the editing function.
Probab=100.00 E-value=2.3e-48 Score=373.63 Aligned_cols=214 Identities=33% Similarity=0.581 Sum_probs=200.7
Q ss_pred CEEEEccCCCCCCcCchhHHHHHHHHHHHHHHHHHcCCeEEEEcCCCCcChHHHHHHHhCCC-------------CHHHH
Q 046127 90 PFVLTTPLYYVNAPPHMGSAYTTIAADAIARFQRLLGKKVIFITGTDEHGEKIAAAAADGGS-------------SPSEH 156 (345)
Q Consensus 90 ~~~I~~~~PypnG~LHIGHar~~i~~DvlaR~lr~~G~~V~~v~G~D~~G~~I~~~A~~~g~-------------~p~~~ 156 (345)
+|+|++|||||||++||||+++++++|+++||+|++|++|.+++|+|+||++|+.+|++.+. +++++
T Consensus 1 ~~~i~~~pP~~~g~~HiGH~~~~i~~D~i~R~~r~~G~~v~~~~g~D~~g~~i~~~a~~~~~~~~~~~~~~~~~~~~~~~ 80 (312)
T cd00668 1 KFYVTTPPPYANGSLHLGHALTHIIADFIARYKRMRGYEVPFLPGWDTHGLPIELKAERKGGRKKKTIWIEEFREDPKEF 80 (312)
T ss_pred CEEEecCCCCCCCCcchhHHHHHHHHHHHHHHHHhCCCCCCCCCccCCCCHHHHHHHHHhcCcccccccHHHHHHHHHHH
Confidence 58999999999999999999999999999999999999999999999999999999999887 88999
Q ss_pred HHHHHHHHHHHHhhcCcccC--ccccCCChhhHHHHHHHHHHHHhCCCeeecccCcccccCCCCccchhhhhcCCcCCCC
Q 046127 157 CDVVSQAYKTLWKDLDIAYD--KFIRTTEPKHEAIVKEFYSSVLANGDIYKADYEGLYCVNCEEYKDEKELLENQCCPIH 234 (345)
Q Consensus 157 ~~~~~~~~~~~l~~lgI~~D--~f~~T~~~~~~~~v~~~~~~L~~kG~iy~~~~~~~yc~~c~~~l~d~el~~~~~c~~~ 234 (345)
|+++.+.|+++|++|||++| .+++|+++.|.+.++++|.+|.++|+||++.+++
T Consensus 81 ~~~~~~~~~~~l~~lgI~~Dw~~~~~T~~~~~~~~v~~~f~~L~~~G~iY~~~~~v------------------------ 136 (312)
T cd00668 81 VEEMSGEHKEDFRRLGISYDWSDEYITTEPEYSKAVELIFSRLYEKGLIYRGTHPV------------------------ 136 (312)
T ss_pred HHHHHHHHHHHHHHhCccccCCCCeECCCHHHHHHHHHHHHHHHHCCCEEeeccee------------------------
Confidence 99999999999999999998 9999999999999999999999999999998866
Q ss_pred CCCceEeeccccccchhHhHHHHHHHHhcCCCcccChHHHHHHHHHHhcCCCCcccccCCCCCCcccCCCCCCcEEEecC
Q 046127 235 LKPCVARKEDNYFFALSKYQKLLEDTLTENPDFVQPSFRLNEVQGWIKSGLRDFSISRASVDWGIPVPNDNKQTIYVWFD 314 (345)
Q Consensus 235 ~~pve~r~~~~~f~~l~~~~~~L~e~l~~~~~~~~P~~~~~~~~~wl~~gL~D~~ISR~~~~WGIpvP~~~~~~iyVWfd 314 (345)
+.++||||+++++++++.+++++.. ++|+..++++.+||++++ ||||||+ .+||+|+| +++||||||
T Consensus 137 ------~~~~~~f~~~~~l~~~~~~~~~~~~--~~p~~~~~~~~~~l~~~~-d~~isR~-~~WG~~~P---~~~i~~Wfd 203 (312)
T cd00668 137 ------RITEQWFFDMPKFKEKLLKALRRGK--IVPEHVKNRMEAWLESLL-DWAISRQ-RYWGTPLP---EDVFDVWFD 203 (312)
T ss_pred ------EeeeeEEEEcHHHHHHHHHHHhcCC--cCChHHHHHHHHHHhCCC-CeEEecc-CCCCCcCC---cccccchhh
Confidence 7889999999999999999998874 689988999999999876 9999998 69999999 799999999
Q ss_pred chhHHHHhcCCCCCCCchhhhhhCcCCCCC
Q 046127 315 ALLGYISALSEDRDQPSLRTAVSSGWPASL 344 (345)
Q Consensus 315 al~gYls~~~~~~~~~~~~~~~~~~w~~~~ 344 (345)
|+++|++++++..+. +.+.++||.|+
T Consensus 204 s~~~~~~~~~~~~~~----~~~~~~~~~di 229 (312)
T cd00668 204 SGIGPLGSLGYPEEK----EWFKDSYPADW 229 (312)
T ss_pred ccHHHHHHcCCCccc----hhhhhcCCceE
Confidence 999999999877653 46888999874
No 20
>PRK06039 ileS isoleucyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=7.1e-48 Score=417.25 Aligned_cols=252 Identities=22% Similarity=0.307 Sum_probs=224.6
Q ss_pred CCCCCEEEEccCCCCCCcCchhHHHHHHHHHHHHHHHHHcCCeEEEEcCCCCcChHHHHHHHhC-CCC------------
Q 046127 86 EPADPFVLTTPLYYVNAPPHMGSAYTTIAADAIARFQRLLGKKVIFITGTDEHGEKIAAAAADG-GSS------------ 152 (345)
Q Consensus 86 ~~~~~~~I~~~~PypnG~LHIGHar~~i~~DvlaR~lr~~G~~V~~v~G~D~~G~~I~~~A~~~-g~~------------ 152 (345)
.++++|+|+.|||||||.|||||++++++.|+++||+||+||+|.++.|||+||+||+..+++. |++
T Consensus 38 ~~~~~f~i~~~PPy~nG~lH~GH~l~~t~kD~i~Ry~rm~G~~v~~~~GwD~~GlPie~~vek~l~~~~~~~i~~~g~~~ 117 (975)
T PRK06039 38 EGGPEFVFYDGPPTANGLPHYGHLLTRTIKDVVPRYKTMKGYKVERRAGWDTHGLPVELEVEKELGISGKKDIEEYGIEK 117 (975)
T ss_pred CCCCCEEEeCCCCCCCCCccHhhhHhhHHHHHHHHHHHhCCCcccCcCCcCCCccHHHHHHHHHhCcccccchhhcCHHH
Confidence 4568899999999999999999999999999999999999999999999999999999999873 654
Q ss_pred ----HHHHHHHHHHHHHHHHhhcCcccC--ccccCCChhhHHHHHHHHHHHHhCCCeeecccCcccccCCCCccchhhh-
Q 046127 153 ----PSEHCDVVSQAYKTLWKDLDIAYD--KFIRTTEPKHEAIVKEFYSSVLANGDIYKADYEGLYCVNCEEYKDEKEL- 225 (345)
Q Consensus 153 ----p~~~~~~~~~~~~~~l~~lgI~~D--~f~~T~~~~~~~~v~~~~~~L~~kG~iy~~~~~~~yc~~c~~~l~d~el- 225 (345)
++++++++.+.+++++++||+++| +.+.|+++.|.+.++++|.+|+++|+||++.++++|||.|+|.|++.|+
T Consensus 118 f~~~c~~~~~~~~~~~~~~~~rlG~~~Dw~~~y~T~d~~y~~~v~~~F~~l~~kGliyr~~~~v~wcp~~~T~Ls~~Ev~ 197 (975)
T PRK06039 118 FNEKCRESVLRYTDEWEEYTERLGRWVDFDNPYKTLDNEYMESVWWALKQLYDKGLLYKGYRVVPYCPRCETPLSNHEVA 197 (975)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCceeecCCCcCcCCHHHHHHHHHHHHHHHHCCCEEecceeeeecCCCCCCccHHHHh
Confidence 568999999999999999997655 7888999999999999999999999999999999999999999975210
Q ss_pred --------------------------------------------------------------------------------
Q 046127 226 -------------------------------------------------------------------------------- 225 (345)
Q Consensus 226 -------------------------------------------------------------------------------- 225 (345)
T Consensus 198 ~~y~~~~~~~~~v~f~l~~~~~~~l~i~TTrP~Tl~~n~avaV~P~~~Y~~~~~~~~~yi~a~~~~~~~~~~~~~~~~~~ 277 (975)
T PRK06039 198 QGYKDVKDPSVYVKFKLKGEENEYLLAWTTTPWTLPSNLALAVHPDIDYVKVEGGGEVYILAEALLEKVLKEDYEVVETF 277 (975)
T ss_pred hcccccCCceEEEEEEecCCCCCEEEEEECCccccccceEEEECCCCceEEEecCCeEEEEhHHHHHHHhhcccEEEeee
Confidence
Q ss_pred -----------------------h--------------------------------------------------------
Q 046127 226 -----------------------L-------------------------------------------------------- 226 (345)
Q Consensus 226 -----------------------~-------------------------------------------------------- 226 (345)
+
T Consensus 278 ~G~~L~G~~~~~P~~~~~~~~~~~pii~~~~V~~~~GTG~V~~aPahg~~D~~~~~~~~l~~~~~id~~G~~~~~~~~~~ 357 (975)
T PRK06039 278 KGSELEGLEYEPPFPYFADEKNAFRVVLADFVTTEDGTGIVHIAPAFGEDDFEVGKKYGLPVVCPVDDDGRFTEEVPDYA 357 (975)
T ss_pred cCccccCCEEECCcccccCCcceeEEEecCccCCCCCccceeeCCCCChHHHHHHHHcCCCccceeCCCceEcCCCcccc
Confidence 0
Q ss_pred -----------------------------cCCcCCCCCCCceEeeccccccchhHhHHHHHHHHhcCCCcccChHHHH-H
Q 046127 227 -----------------------------ENQCCPIHLKPCVARKEDNYFFALSKYQKLLEDTLTENPDFVQPSFRLN-E 276 (345)
Q Consensus 227 -----------------------------~~~~c~~~~~pve~r~~~~~f~~l~~~~~~L~e~l~~~~~~~~P~~~~~-~ 276 (345)
..++|++||+|++++.++|||++++++++++++++++. .+.|+.+++ +
T Consensus 358 G~~v~eA~~~Ii~~L~~~g~l~~~~~~~h~~p~c~R~g~pv~~~~~~qWFi~~~~~k~~ll~~~~~i--~~~P~~~~~~~ 435 (975)
T PRK06039 358 GKFVKDADKEIIRDLKERGLLFKAETYEHSYPHCWRCDTPLIYYATESWFIRVTKIKDRMLELNQKI--NWYPEHIKDGR 435 (975)
T ss_pred CCCHHHhhHHHHHHHHhCCCEeeeeeecCCCCEeCCCCCEEEEEecCeeeEecHHHHHHHHHhhCCe--EEECcccchhh
Confidence 14679999999999999999999999999999999875 468999988 9
Q ss_pred HHHHHhcCCCCcccccCCCCCCcccCC----CC----------------------------------------------C
Q 046127 277 VQGWIKSGLRDFSISRASVDWGIPVPN----DN----------------------------------------------K 306 (345)
Q Consensus 277 ~~~wl~~gL~D~~ISR~~~~WGIpvP~----~~----------------------------------------------~ 306 (345)
+.+||+ +++||||||| .+||+|||. +. .
T Consensus 436 ~~~wl~-~l~DW~ISRq-r~WG~PIPiw~~~~~g~~~v~~~~~el~~~~g~~~~~~~l~~~~~d~~~~~~~~~~~~~r~~ 513 (975)
T PRK06039 436 FGKWLE-NARDWNISRN-RYWGTPLPIWRCEDCGRIDVIGSIEELEELFGEDVEPIDLHRPYVDEVTLPCPDGGTMRRVP 513 (975)
T ss_pred HHHHHh-cCccceeeec-cccCCcceEEEecCCCeEEEeccHHHHHHHhCCCcchhhhcccccccccccCCCCcceEecc
Confidence 999997 5999999998 699999994 21 2
Q ss_pred CcEEEecCchhHHHHhcCCCCCCCchhhhhhCcCCCCC
Q 046127 307 QTIYVWFDALLGYISALSEDRDQPSLRTAVSSGWPASL 344 (345)
Q Consensus 307 ~~iyVWfdal~gYls~~~~~~~~~~~~~~~~~~w~~~~ 344 (345)
+|+|||||+.+.|++.++++.+. .+.|..+||+|+
T Consensus 514 dVlDvWFdSg~~p~a~~~~p~~~---~~~f~~~~Pad~ 548 (975)
T PRK06039 514 DVIDVWFDSGSMPYAQLHYPFEN---KEWFEKHFPADF 548 (975)
T ss_pred ccccceeecCCccHHHhCCcccC---hhhhhccCCceE
Confidence 79999999999999999887542 256888999984
No 21
>PTZ00419 valyl-tRNA synthetase-like protein; Provisional
Probab=100.00 E-value=3.5e-47 Score=413.12 Aligned_cols=253 Identities=20% Similarity=0.302 Sum_probs=224.1
Q ss_pred CCCCCEEEEccCCCCCCcCchhHHHHHHHHHHHHHHHHHcCCeEEEEcCCCCcChHHHHHHHh-----CCCCH-------
Q 046127 86 EPADPFVLTTPLYYVNAPPHMGSAYTTIAADAIARFQRLLGKKVIFITGTDEHGEKIAAAAAD-----GGSSP------- 153 (345)
Q Consensus 86 ~~~~~~~I~~~~PypnG~LHIGHar~~i~~DvlaR~lr~~G~~V~~v~G~D~~G~~I~~~A~~-----~g~~p------- 153 (345)
.++++|+|+.|||||||.|||||+++++++|+++||+||+|++|.+++|+|+||++++...++ .|.++
T Consensus 57 ~~~~~f~i~~ppP~~~G~lHiGHa~~~~~~D~~~Ry~rm~G~~v~~~~G~D~~Gl~~~~~vE~~l~~~~~~~~~~~~~e~ 136 (995)
T PTZ00419 57 NSGKKFVIVLPPPNVTGYLHIGHALTGAIQDSLIRYHRMKGDETLWVPGTDHAGIATQVVVEKKLMKEENKTRHDLGREE 136 (995)
T ss_pred CCCCeEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHhcCCcccCCCCCCCCchhhHHHHHHHHHHhcCCChHHcCHHH
Confidence 356889999999999999999999999999999999999999999999999999999766543 45443
Q ss_pred -----HHHHHHHHHHHHHHHhhcCcccC--ccccCCChhhHHHHHHHHHHHHhCCCeeecccCcccccCCCCccchhhhh
Q 046127 154 -----SEHCDVVSQAYKTLWKDLDIAYD--KFIRTTEPKHEAIVKEFYSSVLANGDIYKADYEGLYCVNCEEYKDEKELL 226 (345)
Q Consensus 154 -----~~~~~~~~~~~~~~l~~lgI~~D--~f~~T~~~~~~~~v~~~~~~L~~kG~iy~~~~~~~yc~~c~~~l~d~el~ 226 (345)
.++++++.+.|+++|++||+++| +++.|+++.|...++++|.+|+++|+||++.++++|||.|+|.|++.|+.
T Consensus 137 f~~~~~~w~~~~~~~~~~~~~~lG~~~DW~~~~~T~d~~~~~~v~~~F~~l~~~Gliyr~~~~V~wcp~~~Talsd~EVe 216 (995)
T PTZ00419 137 FLKKVWEWKDKHGNNICNQLRRLGSSLDWSREVFTMDEQRSKAVKEAFVRLYEDGLIYRDTRLVNWCCYLKTAISDIEVE 216 (995)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCceeeCCCCcCcCCHHHHHHHHHHHHHHHHCCCEEecceeeecCCCCCCCCchhhcc
Confidence 36789999999999999999887 88899999999999999999999999999999999999999887653210
Q ss_pred --------------------------------------------------------------------------------
Q 046127 227 -------------------------------------------------------------------------------- 226 (345)
Q Consensus 227 -------------------------------------------------------------------------------- 226 (345)
T Consensus 217 ~~~~~~~~~~~~~~~~~~~~~g~l~~i~f~l~~~~~~~l~vaTTrPeTl~g~~avav~P~d~~y~~l~G~~~~~Pl~~~~ 296 (995)
T PTZ00419 217 FEEIEKPTKITIPGYDKKVEVGVLWHFAYPLEDSGQEEIVVATTRIETMLGDVAVAVHPKDERYKKLHGKELIHPFIPDR 296 (995)
T ss_pred cccccccceeeccccccccccceeEEEEEeecCCCCcEEEEEeCCcchhhhCeEEEECCCCcHHHHhcCCEEECCccCCC
Confidence
Q ss_pred --------------------------------------------------------------------------------
Q 046127 227 -------------------------------------------------------------------------------- 226 (345)
Q Consensus 227 -------------------------------------------------------------------------------- 226 (345)
T Consensus 297 ~ipii~~~~~V~~~~GTG~V~~~Pahd~~D~~~~~~~~L~~~~~i~~~G~~~~~~~~~~Gl~~~~ar~~ii~~L~~~g~l 376 (995)
T PTZ00419 297 KIPIIADDELVDMEFGTGAVKITPAHDPNDYEIAKRHNLPFINIFTLDGKINENGGEFAGMHRFDCRRKIEEELKEMGLL 376 (995)
T ss_pred EEEEEeCCcccCCCcCCCCeEeCCCCChHHHHHHHHcCCCeeeeeCCCceEcCCCcccCCCCHHHHHHHHHHHHHhcCCE
Confidence
Q ss_pred --------cCCcCCCCCCCceEeeccccccchhHhHHHHHHHHhcCCCcccChHHHHHHHHHHhcCCCCcccccCCCCCC
Q 046127 227 --------ENQCCPIHLKPCVARKEDNYFFALSKYQKLLEDTLTENPDFVQPSFRLNEVQGWIKSGLRDFSISRASVDWG 298 (345)
Q Consensus 227 --------~~~~c~~~~~pve~r~~~~~f~~l~~~~~~L~e~l~~~~~~~~P~~~~~~~~~wl~~gL~D~~ISR~~~~WG 298 (345)
..++|+||+.|+|.+.++|||++++++++++.+.+++++..+.|+.+++++.+||+ +++||||||| .+||
T Consensus 377 ~~~~~~~~~~p~~~R~~~~ie~~~~~QWFi~~~~~~~~al~~v~~~~i~~~P~~~~~~~~~wl~-~l~DWcISRQ-r~WG 454 (995)
T PTZ00419 377 RDKVPNPMRLPRCSRSGDIVEPMLIPQWYVNCKDMAKRAVEAVRNGELKIIPSSHENVWYHWLE-NIQDWCISRQ-LWWG 454 (995)
T ss_pred EeeEEeecCCCEeCCCCCEEEEEecCeeeEecHHHHHHHHHHhhcCCeEEEChHHHHHHHHHHh-ccccceeeee-cccC
Confidence 13679999999999999999999999999999999866667899999999999997 5999999998 7999
Q ss_pred cccCCC---------------------------------------------CCCcEEEecCchhHHHHhcCCCCCCCchh
Q 046127 299 IPVPND---------------------------------------------NKQTIYVWFDALLGYISALSEDRDQPSLR 333 (345)
Q Consensus 299 IpvP~~---------------------------------------------~~~~iyVWfdal~gYls~~~~~~~~~~~~ 333 (345)
+|||.. +.+|+|||||+.+.|++.++++.+.
T Consensus 455 ~pIP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DVlDtWFdS~l~p~~~~g~p~~~---- 530 (995)
T PTZ00419 455 HRIPAYRVISKGPETDPSDEEPWVVARSEEEALEKAKKKFGLSEEDFELEQDEDVLDTWFSSGLFPFSTLGWPDQT---- 530 (995)
T ss_pred ceeeEEEeCCCCccccCCCCceEEEcCCHHHHHhhhccccCCccccCCeEECCceEEEEEeCCHHHHHHhCCCCCh----
Confidence 999951 1289999999999999999887543
Q ss_pred hhhhCcCCCCC
Q 046127 334 TAVSSGWPASL 344 (345)
Q Consensus 334 ~~~~~~w~~~~ 344 (345)
+++..|||+|+
T Consensus 531 ~~~~~~~P~d~ 541 (995)
T PTZ00419 531 DDLQRFFPTSL 541 (995)
T ss_pred HHHhhcCCCcE
Confidence 56889999985
No 22
>cd00812 LeuRS_core catalytic core domain of leucyl-tRNA synthetases. Leucyl tRNA synthetase (LeuRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. In Aquifex aeolicus, the gene encoding LeuRS is split in two, just before the KMSKS motif. Consequently, LeuRS is a heterodimer, which likely superimposes with the LeuRS monomer found in most other organisms. LeuRS has an insertion in the core domain, which is subject to both deletions and rearrangements and thus differs between prokaryotic LeuRS and archaeal/eukaryotic LeuRS. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.
Probab=100.00 E-value=1.6e-46 Score=361.16 Aligned_cols=216 Identities=23% Similarity=0.362 Sum_probs=198.0
Q ss_pred CEEEEccCCCCCCcCchhHHHHHHHHHHHHHHHHHcCCeEEEEcCCCCcChHHHHHHHhCCCCHHHHHHHHHHHHHHHHh
Q 046127 90 PFVLTTPLYYVNAPPHMGSAYTTIAADAIARFQRLLGKKVIFITGTDEHGEKIAAAAADGGSSPSEHCDVVSQAYKTLWK 169 (345)
Q Consensus 90 ~~~I~~~~PypnG~LHIGHar~~i~~DvlaR~lr~~G~~V~~v~G~D~~G~~I~~~A~~~g~~p~~~~~~~~~~~~~~l~ 169 (345)
+++||+|||||||++||||+++++.+|+++||+|++|++|.+++|+|+||+||+.+|++.|++++++++++.+.|+++|+
T Consensus 1 k~~it~~~Py~ng~~HiGH~~~~v~~Dv~~R~lr~~G~~V~~v~g~Dd~g~~i~~~a~~~g~~~~e~~~~~~~~~~~~~~ 80 (314)
T cd00812 1 KFYILVMFPYPSGALHVGHVRTYTIGDIIARYKRMQGYNVLFPMGFDAFGLPAENAAIKIGRDPEDWTEYNIKKMKEQLK 80 (314)
T ss_pred CeEEecCCCCCCCCccccchHHHHHHHHHHHHHHHcCCCcCCCCCcCCCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCcccC--ccccCCChhhHHHHHHHHHHHHhCCCeeecccCcccccCCCCccchhhhhcCCcCCCCCCCceEeeccccc
Q 046127 170 DLDIAYD--KFIRTTEPKHEAIVKEFYSSVLANGDIYKADYEGLYCVNCEEYKDEKELLENQCCPIHLKPCVARKEDNYF 247 (345)
Q Consensus 170 ~lgI~~D--~f~~T~~~~~~~~v~~~~~~L~~kG~iy~~~~~~~yc~~c~~~l~d~el~~~~~c~~~~~pve~r~~~~~f 247 (345)
+|||++| .+++|+++.|.+.++++|.+|.++|+||++++.++|| ++++|||
T Consensus 81 ~lgi~~d~~~~~~t~~~~~~~~v~~~f~~L~~~G~iy~~~~~v~~~---------------------------~~~~~~f 133 (314)
T cd00812 81 RMGFSYDWRREFTTCDPEYYKFTQWLFLKLYEKGLAYKKEAPVNWC---------------------------KLLDQWF 133 (314)
T ss_pred HhccceecccccccCCHHHHHHHHHHHHHHHHCCCEEecCceeeee---------------------------CccceEE
Confidence 9999998 6788999999999999999999999999999999999 7789999
Q ss_pred cch--hHhHHHHHHHHhcCCCcccChHHHHHHHHHHhcCCCCcccccCCCCCCcccCCCCCCcEEEecCchh---HHHHh
Q 046127 248 FAL--SKYQKLLEDTLTENPDFVQPSFRLNEVQGWIKSGLRDFSISRASVDWGIPVPNDNKQTIYVWFDALL---GYISA 322 (345)
Q Consensus 248 ~~l--~~~~~~L~e~l~~~~~~~~P~~~~~~~~~wl~~gL~D~~ISR~~~~WGIpvP~~~~~~iyVWfdal~---gYls~ 322 (345)
|++ ++|+++|.+++++.. ++|+..++.+.+||+ |||+ .+||||+|. +++||||||+++ +|+++
T Consensus 134 ~~l~~~~~~~~l~~~l~~~~--~~p~~~~~~~~~~l~-------isR~-~~wGipvP~--~~~i~~w~ds~~y~~~y~~~ 201 (314)
T cd00812 134 LKYSETEWKEKLLKDLEKLD--GWPEEVRAMQENWIG-------CSRQ-RYWGTPIPW--TDTMESLSDSTWYYARYTDA 201 (314)
T ss_pred EEcCcHHHHHHHHHHHHhcC--cCCHHHHHHHHHHhe-------eeee-cCCcCCcCc--ccccccccccHHHHHHHHhc
Confidence 999 999999999998863 589999999999995 9997 799999997 799999999997 88887
Q ss_pred cCCCCCCC----chhhhhhCcCCCCC
Q 046127 323 LSEDRDQP----SLRTAVSSGWPASL 344 (345)
Q Consensus 323 ~~~~~~~~----~~~~~~~~~w~~~~ 344 (345)
........ ...+.+..|||.|+
T Consensus 202 ~~~~~~~~~~~~~~~~~~~~w~p~di 227 (314)
T cd00812 202 HNLEQPYEGDLEFDREEFEYWYPVDI 227 (314)
T ss_pred ccccCcchhhhhhhHHHHHHhCCCee
Confidence 76543310 12356888999764
No 23
>COG0525 ValS Valyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=3e-46 Score=389.18 Aligned_cols=267 Identities=21% Similarity=0.333 Sum_probs=231.8
Q ss_pred ccccccCCCCCCCCCCC-CCEEEEccCCCCCCcCchhHHHHHHHHHHHHHHHHHcCCeEEEEcCCCCcChHHHHHHHh--
Q 046127 72 VFCSYATNTDKSGTEPA-DPFVLTTPLYYVNAPPHMGSAYTTIAADAIARFQRLLGKKVIFITGTDEHGEKIAAAAAD-- 148 (345)
Q Consensus 72 ~~~~~~~~~~~~~~~~~-~~~~I~~~~PypnG~LHIGHar~~i~~DvlaR~lr~~G~~V~~v~G~D~~G~~I~~~A~~-- 148 (345)
...|...+-|+..++.. ++|+|..||||+||.||||||.+.++.|+++||.||+||+|+++.|+|++|.+++...++
T Consensus 15 ~~~W~~~~~f~~~~~~~~~~f~I~~PPPNVTG~LHmGHAl~~tl~D~l~RykRM~G~~vl~~pG~DhAGIaTq~~VEk~l 94 (877)
T COG0525 15 YKKWEESGYFKPDPNEDKPPFSIDTPPPNVTGSLHMGHALNYTLQDILARYKRMRGYNVLWPPGTDHAGIATQVVVEKQL 94 (877)
T ss_pred HHHHHhcCCccCCCCCCCCCcEEeCCCCCCCCcccchhhhhHHHHHHHHHHHHcCCCeeecCCCCCCCCchHHHHHHHHH
Confidence 33455555665443333 669999999999999999999999999999999999999999999999999999888875
Q ss_pred --CCCCH------------HHHHHHHHHHHHHHHhhcCcccC--ccccCCChhhHHHHHHHHHHHHhCCCeeecccCccc
Q 046127 149 --GGSSP------------SEHCDVVSQAYKTLWKDLDIAYD--KFIRTTEPKHEAIVKEFYSSVLANGDIYKADYEGLY 212 (345)
Q Consensus 149 --~g~~p------------~~~~~~~~~~~~~~l~~lgI~~D--~f~~T~~~~~~~~v~~~~~~L~~kG~iy~~~~~~~y 212 (345)
.|++. .+|.+++...|+++|++||+++| ..+.|+|+.+...|+++|.+|+++|+||++++.+.|
T Consensus 95 ~~~g~~r~d~gRe~Fl~~~weWk~e~~~~I~~Q~~rLG~S~DWsrE~fTmD~~~s~av~~~Fv~Ly~~GlIYr~~~lVNW 174 (877)
T COG0525 95 AAEGITRHDLGREEFLKKCWEWKEESGGTIREQLRRLGVSVDWSRERFTMDPGLSRAVQEAFVRLYEKGLIYRGERLVNW 174 (877)
T ss_pred HHcCCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccccccCCHHHHHHHHHHHHHHHHCCceeecCCcccC
Confidence 25443 26778889999999999999988 566799999999999999999999999999999999
Q ss_pred ccCCCCccchhhhh------------------------------------------------------------------
Q 046127 213 CVNCEEYKDEKELL------------------------------------------------------------------ 226 (345)
Q Consensus 213 c~~c~~~l~d~el~------------------------------------------------------------------ 226 (345)
||.|+|.+||.|++
T Consensus 175 cP~~~TAiSd~EVe~~e~~g~L~~i~y~l~~~~~~i~VATTRPEtmlgdtAVaVhP~DeRYk~LvGk~v~lPl~~r~IpI 254 (877)
T COG0525 175 CPKCRTAISDIEVEYKEVEGKLYYIKYPLADGDGYLVVATTRPETLLGDTAVAVHPDDERYKHLVGKEVILPLVGREIPI 254 (877)
T ss_pred CCccccchhhhhhccceeeeeEEEEEEecCCCCceEEEEecCccccccceEEEECCCChhhHhhcCCEEecCCCCCeeee
Confidence 99999999884310
Q ss_pred --------------------------------------------------------------------------------
Q 046127 227 -------------------------------------------------------------------------------- 226 (345)
Q Consensus 227 -------------------------------------------------------------------------------- 226 (345)
T Consensus 255 iaD~~VD~eFGTG~VkItpahD~nD~e~~krh~Lp~i~i~d~dG~in~~~~~~~~Gl~r~eAR~kIv~~L~~~GlLvk~e 334 (877)
T COG0525 255 IADEYVDPEFGTGAVKITPAHDFNDYEVGKRHNLPLINIIDEDGRINEEAAGEFAGLDRFEARKKIVEDLEEQGLLVKIE 334 (877)
T ss_pred ecCcccCCcCCCceEEecCCCCchhhhhhhcCCCCceEEECCCCeeccCCccccCCCcHHHHHHHHHHHHHhCCCeEeee
Confidence
Q ss_pred ----cCCcCCCCCCCceEeeccccccchhHhHHHHHHHHhcCCCcccChHHHHHHHHHHhcCCCCcccccCCCCCCcccC
Q 046127 227 ----ENQCCPIHLKPCVARKEDNYFFALSKYQKLLEDTLTENPDFVQPSFRLNEVQGWIKSGLRDFSISRASVDWGIPVP 302 (345)
Q Consensus 227 ----~~~~c~~~~~pve~r~~~~~f~~l~~~~~~L~e~l~~~~~~~~P~~~~~~~~~wl~~gL~D~~ISR~~~~WGIpvP 302 (345)
..++|+|||.|+|..-++|||+++..+++.+.+..+++...+.|+.+.+.+.+|++ +++||||||| .+||++||
T Consensus 335 ~~~h~V~~~~R~g~~IEp~ls~QWfVk~~~la~~~l~~~~~g~i~f~P~~~~~~~~~W~~-~i~DWcISRQ-lwwGh~IP 412 (877)
T COG0525 335 PHKHSVGHCERCGTPIEPLLSKQWFVKVLELAKKALEAVKDGKIKFVPERMEKRYEDWME-NIRDWCISRQ-LWWGHRIP 412 (877)
T ss_pred eccccCccccCCCceeeeeecceeeEEhHhhHHHHHHHHhcCCceEecHHHHHHHHHHHh-hCcCceeeee-eecCcccc
Confidence 14789999999999999999999999999999999954446789999999999997 5999999999 79999999
Q ss_pred C----C---------------------------CCCcEEEecCchhHHHHhcCCCCCCCchhhhhhCcCCCCC
Q 046127 303 N----D---------------------------NKQTIYVWFDALLGYISALSEDRDQPSLRTAVSSGWPASL 344 (345)
Q Consensus 303 ~----~---------------------------~~~~iyVWfdal~gYls~~~~~~~~~~~~~~~~~~w~~~~ 344 (345)
. + +..|+++||++.+..+|+++++.+. +++.+|.|.++
T Consensus 413 vWy~~~~g~v~v~~~~~~~~~~~~~~~~~~~~qd~DVLDTWFSS~LwPfstlgWp~~t----~~l~~fyPt~l 481 (877)
T COG0525 413 VWYCKECGNVVVAEEEPEDPAAAEKCPKEELEQDEDVLDTWFSSSLWPFSTLGWPEET----PDLKKFYPTDL 481 (877)
T ss_pred eEEecCCCcEEeCCccccchhhhccCchhcccCCcchhhhhhhcccccccccCCCCcc----hHHHhcCCCcc
Confidence 2 1 2458999999999999999999874 77888999885
No 24
>TIGR00392 ileS isoleucyl-tRNA synthetase. The isoleucyl tRNA synthetase (IleS) is a class I amino acyl-tRNA ligase and is particularly closely related to the valyl tRNA synthetase. This model may recognize IleS from every species, including eukaryotic cytosolic and mitochondrial forms.
Probab=100.00 E-value=4.7e-46 Score=399.94 Aligned_cols=251 Identities=20% Similarity=0.330 Sum_probs=220.4
Q ss_pred CCCCCEEEEccCCCCCCcCchhHHHHHHHHHHHHHHHHHcCCeEEEEcCCCCcChHHHHHHHhC-CCC------H-----
Q 046127 86 EPADPFVLTTPLYYVNAPPHMGSAYTTIAADAIARFQRLLGKKVIFITGTDEHGEKIAAAAADG-GSS------P----- 153 (345)
Q Consensus 86 ~~~~~~~I~~~~PypnG~LHIGHar~~i~~DvlaR~lr~~G~~V~~v~G~D~~G~~I~~~A~~~-g~~------p----- 153 (345)
.++++|+|+.|||||||.|||||+++++++|+++||+||+|++|.++.|+|+||+||+.+|++. |+. +
T Consensus 33 ~~~~~f~i~~~pPy~nG~lH~GH~~~~~~~D~~~Ry~rm~G~~v~~~~G~D~~Glpie~~~ek~l~~~~~~~~~~~~~~~ 112 (861)
T TIGR00392 33 KGKPEFIFHDGPPYANGSIHLGHALNKILKDIILRYKTMQGFNVTRKPGWDTHGLPIEHKVEKKLGISGKKEISSLEIEE 112 (861)
T ss_pred CCCCCeEEecCCCCCCCCccHHHHHHHHHHHHHHHHHHcCCCccCCCCCcCCCccHHHHHHHHHhCcccccccchhhHHH
Confidence 4568899999999999999999999999999999999999999999999999999999999875 554 3
Q ss_pred -----HHHHHHHHHHHHHHHhhcCccc--CccccCCChhhHHHHHHHHHHHHhCCCeeecccCcccccCCCCccchhhh-
Q 046127 154 -----SEHCDVVSQAYKTLWKDLDIAY--DKFIRTTEPKHEAIVKEFYSSVLANGDIYKADYEGLYCVNCEEYKDEKEL- 225 (345)
Q Consensus 154 -----~~~~~~~~~~~~~~l~~lgI~~--D~f~~T~~~~~~~~v~~~~~~L~~kG~iy~~~~~~~yc~~c~~~l~d~el- 225 (345)
+++++++.+.++++|++||++. |+.+.|+++.|.+.++++|.+|+++|+||++..+++|||.|+|.|+++|+
T Consensus 113 f~~~c~~~~~~~~~~~~~~~~~lG~~~dw~~~y~T~~p~y~~~~~~~f~~l~~~gliyr~~~~v~w~p~~~T~La~~Ev~ 192 (861)
T TIGR00392 113 FREKCREFALKQIEEQREQFQRLGVWGDWENPYKTMDPSYEESQWWLFKEAHEKGLLYRGLKPVYWSPRCRTALAEAEVE 192 (861)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCceecCCCCcCcCCHHHHHHHHHHHHHHHHCCCEeecceeeecCCCcCCcccHHHHh
Confidence 3788999999999999999965 48889999999999999999999999999999999999999987754210
Q ss_pred --------------------------------------------------------------------------------
Q 046127 226 -------------------------------------------------------------------------------- 225 (345)
Q Consensus 226 -------------------------------------------------------------------------------- 225 (345)
T Consensus 193 ~~~~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~l~i~TTrP~Tl~~~~ai~v~p~~~Y~~~~~~~~~~~~i~~~~~~~~~ 272 (861)
T TIGR00392 193 YKENYKDVKDPSIYVKFPVKKDKKTYLKVKLSSLLIWTTTPWTLPSNLAIAVHPDFEYALVQDNTKVEYFILAKKLVEKL 272 (861)
T ss_pred cccccccccCceEEEEEEecCCcccccccccceEEEEECCcccccCCeeeeeCCCCceEEEEcCCCCcEEEEeHHHHHHH
Confidence
Q ss_pred ---------------------------------------h----------------------------------------
Q 046127 226 ---------------------------------------L---------------------------------------- 226 (345)
Q Consensus 226 ---------------------------------------~---------------------------------------- 226 (345)
.
T Consensus 273 ~~~~~~~~~~~~~~~G~~l~g~~~~~P~~~~~~~~~~~~p~v~~~~~V~~~~GTG~V~~~Pah~~~D~~~~~~~~l~~~~ 352 (861)
T TIGR00392 273 YNKAGSDYEIIKTFKGSDLEGLEYEHPLYDFVSQLKEGAPVVIGGDHVTTEDGTGIVHTAPGHGEEDYEIGKKYGLEVLS 352 (861)
T ss_pred HHhcCCceEEEeeecchhhCCCEEECCCCccccccccCCcEEeCCCCCCCCCCCceeEcCCCCCHHHHHHHHHcCCCccc
Confidence 0
Q ss_pred ----------------------------------------------------cCCcCCCCCCCceEeeccccccchhHhH
Q 046127 227 ----------------------------------------------------ENQCCPIHLKPCVARKEDNYFFALSKYQ 254 (345)
Q Consensus 227 ----------------------------------------------------~~~~c~~~~~pve~r~~~~~f~~l~~~~ 254 (345)
..++|+||++|++++.++|||+++++++
T Consensus 353 ~vd~~g~~~~~~~~~~g~~~~~~g~~~~~a~~~ii~~L~~~g~l~~~~~~~h~~p~~~R~~~~v~~~~~~QWFi~~~~~k 432 (861)
T TIGR00392 353 PVDEKGVYTEGVNDFQGRFVKDADKDIIKANKIIIEQLKDKGLLLKAEKITHSYPHCWRTKTPVIYRATEQWFIKTKDIK 432 (861)
T ss_pred ccCCCceECCcCccccccccccCCccHHHhHHHHHHHHHhCCCeeeeeeEecCCCccCCCCCEEEEecCccccEEcHHHH
Confidence 0135888999999999999999999999
Q ss_pred HHHHHHHhcCCCcccChHHHHHHHHHHhcCCCCcccccCCCCCCcccCC---C---------------------------
Q 046127 255 KLLEDTLTENPDFVQPSFRLNEVQGWIKSGLRDFSISRASVDWGIPVPN---D--------------------------- 304 (345)
Q Consensus 255 ~~L~e~l~~~~~~~~P~~~~~~~~~wl~~gL~D~~ISR~~~~WGIpvP~---~--------------------------- 304 (345)
+++++.+++. .+.|+..++.+.+||+ +++||||||| .+||+|||. +
T Consensus 433 ~~~l~~~~~i--~~~P~~~~~~~~~~l~-~l~DW~ISRq-r~WG~pIP~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~w~ 508 (861)
T TIGR00392 433 DQMLEQIKKV--NWVPEWGEGRFGNWLE-NRPDWCISRQ-RYWGIPIPIWYCEDTGEPIVVGSIEELIELIELKGIDAWF 508 (861)
T ss_pred HHHHHHhCCc--EEECchHHHHHHHHHh-CCCcceeecc-ccCCCeeeEEEECCCCCCcCchhHHHHHHHHHHhCCcccc
Confidence 9999999876 4689999999999998 6999999999 599999994 1
Q ss_pred -----------------------CCCcEEEecCchhHHHHhcCCCCCCCchhhhhhCcCCCCC
Q 046127 305 -----------------------NKQTIYVWFDALLGYISALSEDRDQPSLRTAVSSGWPASL 344 (345)
Q Consensus 305 -----------------------~~~~iyVWfdal~gYls~~~~~~~~~~~~~~~~~~w~~~~ 344 (345)
+..|+||||||+++|+++.+++.+. ..+..|||+|+
T Consensus 509 ~~~~~~~~~~~~~~~~~~~~~~r~~dvlDvWfdS~~~~~~~~~~~~~~----~~f~~~~P~d~ 567 (861)
T TIGR00392 509 EDLHRDFLDKITLKSGDGGEYRRVPDVLDVWFDSGSMPYASIHYPFEN----EKFKEVFPADF 567 (861)
T ss_pred ccchhhhcCchhccCCCCcceEEccccccchhhcCcchHHhcCCCCCc----chhhccCCceE
Confidence 1249999999999999999865442 35889999874
No 25
>PLN02381 valyl-tRNA synthetase
Probab=100.00 E-value=2.6e-45 Score=398.30 Aligned_cols=265 Identities=20% Similarity=0.275 Sum_probs=228.5
Q ss_pred ccccCCCCCCC-CCCCCCEEEEccCCCCCCcCchhHHHHHHHHHHHHHHHHHcCCeEEEEcCCCCcChHHHHHHHh----
Q 046127 74 CSYATNTDKSG-TEPADPFVLTTPLYYVNAPPHMGSAYTTIAADAIARFQRLLGKKVIFITGTDEHGEKIAAAAAD---- 148 (345)
Q Consensus 74 ~~~~~~~~~~~-~~~~~~~~I~~~~PypnG~LHIGHar~~i~~DvlaR~lr~~G~~V~~v~G~D~~G~~I~~~A~~---- 148 (345)
.|.....|... ..++++|+|++||||+||.|||||++++++.|+++||+||+|++|++++|+|+||++++.++++
T Consensus 112 ~W~~~~~f~~~~~~~~~~f~i~~ppPy~nG~lHiGHa~~~ti~Dii~Ry~rm~G~~vl~~~G~D~~Glp~e~~vek~l~~ 191 (1066)
T PLN02381 112 WWEKSGYFGADAKSSKPPFVIVLPPPNVTGALHIGHALTAAIEDTIIRWKRMSGYNALWVPGVDHAGIATQVVVEKKLMR 191 (1066)
T ss_pred HHHHCCCccCCccCCCCcEEEEeCCCCCCCCccHHHHHHHHHHHHHHHHHHhCCCcccccCCCCCCcChHHHHHHHHhHh
Confidence 35555556432 2456889999999999999999999999999999999999999999999999999999999875
Q ss_pred -CCCCH------------HHHHHHHHHHHHHHHhhcCcccC--ccccCCChhhHHHHHHHHHHHHhCCCeeecccCcccc
Q 046127 149 -GGSSP------------SEHCDVVSQAYKTLWKDLDIAYD--KFIRTTEPKHEAIVKEFYSSVLANGDIYKADYEGLYC 213 (345)
Q Consensus 149 -~g~~p------------~~~~~~~~~~~~~~l~~lgI~~D--~f~~T~~~~~~~~v~~~~~~L~~kG~iy~~~~~~~yc 213 (345)
.|.++ .++++++.+.|+++|++||+++| +.+.|+++.|...++++|.+|+++|+||++.++++||
T Consensus 192 ~~~~~~~~~~re~f~~~~~~~~~~~~~~~~~q~~~lG~s~Dw~~~~~T~d~~~~~~v~~~F~~L~~~GlIyr~~~~VnWc 271 (1066)
T PLN02381 192 ERHLTRHDIGREEFVSEVWKWKDEYGGTILNQLRRLGASLDWSRECFTMDEQRSKAVTEAFVRLYKEGLIYRDIRLVNWD 271 (1066)
T ss_pred hcCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHhCchhccCCccccCCHHHHHHHHHHHHHHHHCCCEEeccccccCC
Confidence 35544 26788999999999999998877 6677999999999999999999999999999999999
Q ss_pred cCCCCccchhhh--------------------------------------------------------------------
Q 046127 214 VNCEEYKDEKEL-------------------------------------------------------------------- 225 (345)
Q Consensus 214 ~~c~~~l~d~el-------------------------------------------------------------------- 225 (345)
|.|+|.|++.|+
T Consensus 272 P~~~TaLSd~EVey~d~~~~s~~~~~~~~~~~~~g~~~~~~Y~l~~~~~~i~vATtRpEti~g~~avaV~P~d~ry~~L~ 351 (1066)
T PLN02381 272 CTLRTAISDVEVDYIDIKERTLLKVPGYDKPVEFGVLTSFAYPLEGGLGEIVVATTRIETMLGDTAIAIHPDDERYKHLH 351 (1066)
T ss_pred CCCCCCccHHHhhhhccccchhhcccCCCcceeeEEEEEEEEEecCCCCEEEEecCCHHHHhcccceeeCCCCcchhhhC
Confidence 999999877511
Q ss_pred --------------------------------------------------------------------------------
Q 046127 226 -------------------------------------------------------------------------------- 225 (345)
Q Consensus 226 -------------------------------------------------------------------------------- 225 (345)
T Consensus 352 G~~~~~Pl~~~~ipIi~d~~~Vd~e~GTG~V~i~PaHd~~Dy~~~~~~~L~~i~~id~~G~~~~~~~~~~~Gl~~~eAr~ 431 (1066)
T PLN02381 352 GKFAVHPFNGRKLPIICDAILVDPNFGTGAVKITPAHDPNDFEVGKRHNLEFINIFTDDGKINSNGGSEFAGMPRFAARE 431 (1066)
T ss_pred CCEEECCCCCCEEEEEECCccccccCCCCcEEecCCCChHHHHHHHHcCCCeeeeeCCCceeCCCCccccCCCCHHHHHH
Confidence
Q ss_pred -------------------hcCCcCCCCCCCceEeeccccccchhHhHHHHHHHH---hcCCCcccChHHHHHHHHHHhc
Q 046127 226 -------------------LENQCCPIHLKPCVARKEDNYFFALSKYQKLLEDTL---TENPDFVQPSFRLNEVQGWIKS 283 (345)
Q Consensus 226 -------------------~~~~~c~~~~~pve~r~~~~~f~~l~~~~~~L~e~l---~~~~~~~~P~~~~~~~~~wl~~ 283 (345)
...++|+||++|+|.+.++|||++++++++++.+.+ .+....|.|+..++.+.+||.
T Consensus 432 ~Ii~~L~~~g~l~~~~~~~h~~p~c~R~~~~ie~~~~~QWFi~~~~l~~~al~av~~~~~~~i~~~P~~~~~~~~~wl~- 510 (1066)
T PLN02381 432 AVIEALQKKGLYRGAKNNEMRLGLCSRTNDVVEPMIKPQWFVNCSSMAKQALDAAIDGENKKLEFIPKQYLAEWKRWLE- 510 (1066)
T ss_pred HHHHHHHhCCCEecceeeecCCCeeCCCCceEEEeecccceEEchHHHHHHHHHHhhccCCceEEEChHHHHHHHHHHh-
Confidence 004679999999999999999999999999999998 333346899999999999997
Q ss_pred CCCCcccccCCCCCCcccCC---C------------------------------------------CCCcEEEecCchhH
Q 046127 284 GLRDFSISRASVDWGIPVPN---D------------------------------------------NKQTIYVWFDALLG 318 (345)
Q Consensus 284 gL~D~~ISR~~~~WGIpvP~---~------------------------------------------~~~~iyVWfdal~g 318 (345)
+++||||||| .+||+|||. . +..|++||||+.+.
T Consensus 511 n~~DWcISRQ-r~WG~pIPiw~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rd~DVlDtWF~Sg~~ 589 (1066)
T PLN02381 511 NIRDWCISRQ-LWWGHRIPAWYVTLEDDQLKELGSYNDHWVVARNESDALLEASQKFPGKKFELSQDPDVLDTWFSSGLF 589 (1066)
T ss_pred cCccceeeee-cccCCccceEEeccChhhcccCCcccceEEEccchHhhcchhhcccCCCccceeecCceeeEEEeCCch
Confidence 5999999999 699999992 1 12489999999999
Q ss_pred HHHhcCCCCCCCchhhhhhCcCCCCC
Q 046127 319 YISALSEDRDQPSLRTAVSSGWPASL 344 (345)
Q Consensus 319 Yls~~~~~~~~~~~~~~~~~~w~~~~ 344 (345)
+++.++++.+. +++..|||+|+
T Consensus 590 p~~~lg~P~~~----~~~~~~~P~d~ 611 (1066)
T PLN02381 590 PLSVLGWPDDT----DDLKAFYPTSV 611 (1066)
T ss_pred HHHHhcCCCCH----HHHhccCCCee
Confidence 99999987553 56888999985
No 26
>PRK05743 ileS isoleucyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=1.6e-44 Score=388.58 Aligned_cols=233 Identities=22% Similarity=0.350 Sum_probs=206.2
Q ss_pred CCCCCEEEEccCCCCCCcCchhHHHHHHHHHHHHHHHHHcCCeEEEEcCCCCcChHHHHHHHhC------CCCHH-----
Q 046127 86 EPADPFVLTTPLYYVNAPPHMGSAYTTIAADAIARFQRLLGKKVIFITGTDEHGEKIAAAAADG------GSSPS----- 154 (345)
Q Consensus 86 ~~~~~~~I~~~~PypnG~LHIGHar~~i~~DvlaR~lr~~G~~V~~v~G~D~~G~~I~~~A~~~------g~~p~----- 154 (345)
.++++|+|++||||+||.|||||+++++++|+++||+||+|++|.+++|+|+||+||+.++++. +++++
T Consensus 46 ~~~~~f~i~~~pPyanG~lHiGHa~~~~~~Dii~Ry~rm~G~~v~~~~G~D~~Glpie~~~ek~l~~~~~~~~~~~f~~~ 125 (912)
T PRK05743 46 KGKPKFILHDGPPYANGDIHIGHALNKILKDIIVKSKTMSGFDAPYVPGWDCHGLPIELKVEKKLGKKGKKLSAAEFRKK 125 (912)
T ss_pred CCCCcEEEeCCCCCCCCCccHHHHHHHHHHHHHHHHHHccCCcccCCCCcCCCccHhHHHHHHHcCCccccCCHHHHHHH
Confidence 4568899999999999999999999999999999999999999999999999999999999885 56676
Q ss_pred --HHHHHHHHHHHHHHhhcCc--ccCccccCCChhhHHHHHHHHHHHHhCCCeeecccCcccccCCCCccchhhh-----
Q 046127 155 --EHCDVVSQAYKTLWKDLDI--AYDKFIRTTEPKHEAIVKEFYSSVLANGDIYKADYEGLYCVNCEEYKDEKEL----- 225 (345)
Q Consensus 155 --~~~~~~~~~~~~~l~~lgI--~~D~f~~T~~~~~~~~v~~~~~~L~~kG~iy~~~~~~~yc~~c~~~l~d~el----- 225 (345)
++++++.+.++++|++||+ ++|+++.|+++.|...++++|.+|+++|+||++..+++||+.|++.|++.|+
T Consensus 126 c~~~~~~~~~~~~~~~~~lG~~~dw~~~~~T~~~~~~~~v~~~f~~l~~~Gliy~~~~~v~w~p~~~TaLad~Evey~~~ 205 (912)
T PRK05743 126 CREYALEQVDIQREDFKRLGVLGDWDNPYLTMDFKYEANIIRALGKMAKKGYLYKGLKPVYWCPDCGSALAEAEVEYHDK 205 (912)
T ss_pred HHHHHHHHHHHHHHHHHHhCCcccCCCCcCCCCHHHHHHHHHHHHHHHHCCCEEecceeEecCCCcCCCchhhHhhcccc
Confidence 4888889999999999999 5568999999999999999999999999999999999999999999865210
Q ss_pred --------------------------------------------------------------------------------
Q 046127 226 -------------------------------------------------------------------------------- 225 (345)
Q Consensus 226 -------------------------------------------------------------------------------- 225 (345)
T Consensus 206 ~s~~~yv~f~l~~~~~~~~~~~~~l~i~TTrP~Tl~~n~aiav~p~~~Y~~~~~~~~~~i~a~~~~~~~~~~~~~~~~~~ 285 (912)
T PRK05743 206 TSPSIYVAFPVVDGKLAAAFKDASLVIWTTTPWTLPANQAIAVHPEFDYVLVEVEGEKLIVAKDLVESVLERFGWEDYEV 285 (912)
T ss_pred cCceEEEEEEecCcchhcccCCCEEEEEeCCChhhhhCeEEEECCCCeeEEEEcCCCEEEEeHHhHHHHHHhhCCcceEE
Confidence
Q ss_pred ---------h----------------------------------------------------------------------
Q 046127 226 ---------L---------------------------------------------------------------------- 226 (345)
Q Consensus 226 ---------~---------------------------------------------------------------------- 226 (345)
+
T Consensus 286 ~~~~~G~~l~g~~~~~Pl~~~~~pvi~~~~V~~~~GTG~Vh~aPahg~~Dy~~~~~~~L~~~~~vd~~G~~~~~~~~~~G 365 (912)
T PRK05743 286 LATFKGKELEGLVAQHPFYDRDSPVILGDHVTLDAGTGLVHTAPGHGEDDYVVGQKYGLEVLNPVDDDGRYTEEAPLFAG 365 (912)
T ss_pred EEEechHhhcCCEEECCCCCCeeeEeCCCccCCCCCcCeEEeCCCCCHHHHHHHHHcCCCcccccCCCceEecCCcccCC
Confidence 0
Q ss_pred ----------------------------cCCcCCCCCCCceEeeccccccchhH--hHHHHHHHHhcCCCcccChHHHHH
Q 046127 227 ----------------------------ENQCCPIHLKPCVARKEDNYFFALSK--YQKLLEDTLTENPDFVQPSFRLNE 276 (345)
Q Consensus 227 ----------------------------~~~~c~~~~~pve~r~~~~~f~~l~~--~~~~L~e~l~~~~~~~~P~~~~~~ 276 (345)
..++|+||++|+++|.++|||+++++ +++++++.+++. .+.|+..+++
T Consensus 366 l~v~ea~~~Ii~~L~~~g~l~~~~~~~h~yp~~wR~~~pvi~r~~~QWFi~~~~~~~k~~~l~~~~~v--~~~P~~~~~r 443 (912)
T PRK05743 366 LFVFKANPKIIEKLEEKGALLKEEKITHSYPHCWRTKKPVIFRATPQWFISMDKKGLREQALKAIEKV--KWIPAWGKNR 443 (912)
T ss_pred cCHHHhHHHHHHHHHhCCCeeeeeeeeccCCeecCCCCEEEEEecCcccEeCChHHHHHHHHHHHccc--EEEChHHHHH
Confidence 14679999999999999999999998 999999999875 4679999999
Q ss_pred HHHHHhcCCCCcccccCCCCCCcccCC----CC------------------CCcEEEecCchhHHHHh
Q 046127 277 VQGWIKSGLRDFSISRASVDWGIPVPN----DN------------------KQTIYVWFDALLGYISA 322 (345)
Q Consensus 277 ~~~wl~~gL~D~~ISR~~~~WGIpvP~----~~------------------~~~iyVWfdal~gYls~ 322 (345)
+.+||++ ++||||||| .+||+|||. +. ++.+++|||+...++..
T Consensus 444 ~~~~i~~-~~DWcISRQ-R~WG~PIP~~~~~~~g~~~~~~~~~~~i~~~~~~~g~~~W~~~~~~~~~~ 509 (912)
T PRK05743 444 IESMVEN-RPDWCISRQ-RTWGVPIPIFYHKETGELHPTPELIEHVAKLFEKEGIDAWFELDAKELLP 509 (912)
T ss_pred HHHHHhc-CcCcccccc-ceeCceEEEEEECCCCcEeecHHHHHHHHHHHHhhCCccccccCHHHhcC
Confidence 9999975 999999999 599999995 22 22457788877766643
No 27
>PLN02882 aminoacyl-tRNA ligase
Probab=100.00 E-value=2.7e-44 Score=392.45 Aligned_cols=263 Identities=18% Similarity=0.306 Sum_probs=225.9
Q ss_pred cccCCCCCCC---CCCCCCEEEEccCCCCCCcCchhHHHHHHHHHHHHHHHHHcCCeEEEEcCCCCcChHHHHHHHh-CC
Q 046127 75 SYATNTDKSG---TEPADPFVLTTPLYYVNAPPHMGSAYTTIAADAIARFQRLLGKKVIFITGTDEHGEKIAAAAAD-GG 150 (345)
Q Consensus 75 ~~~~~~~~~~---~~~~~~~~I~~~~PypnG~LHIGHar~~i~~DvlaR~lr~~G~~V~~v~G~D~~G~~I~~~A~~-~g 150 (345)
|...+.|... ..++++|++..||||+||.|||||++++++.|+++||+||+||+|.+++|||+||+||+..+++ .|
T Consensus 21 W~e~~~f~~~~~~~~~~~~f~~~dgPPyanG~~HiGH~~~~~ikDii~Ry~rm~G~~V~~~~GwD~hGlPiE~~vek~lg 100 (1159)
T PLN02882 21 WSEIDAFKTQLKRTEGLPEYIFYDGPPFATGLPHYGHILAGTIKDIVTRYQSMTGHHVTRRFGWDCHGLPVEYEIDKKLG 100 (1159)
T ss_pred HHhCCCccccccccCCCCCEEEeCCCCCCCCcchhhHHHHHHHHHHHHHHHHcCCCcccccCccCCCCcHHHHHHHHHcC
Confidence 4444555321 2356789999999999999999999999999999999999999999999999999999999864 45
Q ss_pred CC----------------HHHHHHHHHHHHHHHHhhcC--cccCccccCCChhhHHHHHHHHHHHHhCCCeeecccCccc
Q 046127 151 SS----------------PSEHCDVVSQAYKTLWKDLD--IAYDKFIRTTEPKHEAIVKEFYSSVLANGDIYKADYEGLY 212 (345)
Q Consensus 151 ~~----------------p~~~~~~~~~~~~~~l~~lg--I~~D~f~~T~~~~~~~~v~~~~~~L~~kG~iy~~~~~~~y 212 (345)
+. +++++.++.+.+++++++|| +++|+.++|+++.|.+.++++|.+|+++|+||++.++++|
T Consensus 101 i~~~~~i~~~g~~~f~~~c~~~~~~~~~~~~~~~~rlG~~~D~~~~y~T~d~~~~~~v~~~f~~l~~kGliyr~~~~v~w 180 (1159)
T PLN02882 101 IKRRDDVLKMGIDKYNEECRSIVTRYSKEWEKTVTRTGRWIDFENDYKTMDPKFMESVWWVFKQLFEKGLVYKGFKVMPY 180 (1159)
T ss_pred CCCccchhhcCHHHHHHHHHHHHHHHHHHHHHHHHHcCcEEECCCCcCcCCHHHHHHHHHHHHHHHHCCCEEecceeEee
Confidence 43 34688999999999999999 5667999999999999999999999999999999999999
Q ss_pred ccCCCCccchh---------------------------------------------------h-----------------
Q 046127 213 CVNCEEYKDEK---------------------------------------------------E----------------- 224 (345)
Q Consensus 213 c~~c~~~l~d~---------------------------------------------------e----------------- 224 (345)
||.|+|.|++. +
T Consensus 181 cp~~~TaLs~~E~~~~Yk~~~~~si~v~F~l~~~~~~~~l~iwTTtPwTLpsn~Al~VnP~~~Y~~v~~~~~~~~~i~a~ 260 (1159)
T PLN02882 181 STACKTPLSNFEAGLNYKDVSDPAVMVSFPIVGDPDNASFVAWTTTPWTLPSNLALCVNPNFTYVKVRNKYTGKVYIVAE 260 (1159)
T ss_pred cCCCCCCcchhhhhhhcccCCCcEEEEEEEecCCCCCcEEEEEeCCccccccCeEEEECCCCcEEEEEecCCCeEEEEhH
Confidence 99999999731 0
Q ss_pred ------------------------------------h------------------h------------------------
Q 046127 225 ------------------------------------L------------------L------------------------ 226 (345)
Q Consensus 225 ------------------------------------l------------------~------------------------ 226 (345)
+ .
T Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~G~~L~g~~y~p~~~~~~~~~~~~~~Vi~~~~V~~~~GTGiVh~aPah 340 (1159)
T PLN02882 261 SRLSALPTAKPKSKKGSKPENAAEGYEVLAKVPGSSLVGKKYEPLFDYFSEFSDTAFRVVADDYVTDDSGTGVVHCAPAF 340 (1159)
T ss_pred HHHHHHHhhhhcccccccccccccccEEEEEecchhhcCCEEECCccccccccCceEEEEccCccCCCCCcceeEecCCC
Confidence 0 0
Q ss_pred -------------------------------------------------------------------cCCcCCCCCCCce
Q 046127 227 -------------------------------------------------------------------ENQCCPIHLKPCV 239 (345)
Q Consensus 227 -------------------------------------------------------------------~~~~c~~~~~pve 239 (345)
..++|+||++|++
T Consensus 341 G~~Dy~v~~~~gl~~~~~~~~~~vd~~G~~~~~~~~~~G~~v~eA~~~Ii~~Lk~~g~L~~~~~~~Hsyp~cwR~~tpli 420 (1159)
T PLN02882 341 GEDDYRVCLANGIIEKGGNLPVPVDDDGCFTEKVTDFSGRYVKDADKDIIAAIKAKGRLVKSGSITHSYPFCWRSDTPLI 420 (1159)
T ss_pred ChhHHHHHHHcCCCccccCccceECCCceEccCCcccCCCCHHHhhHHHHHHHHHCCCccceeeeecCCCEeeCCCCEEE
Confidence 0467999999999
Q ss_pred EeeccccccchhHhHHHHHHHHhcCCCcccChHH-HHHHHHHHhcCCCCcccccCCCCCCcccCC----CC---------
Q 046127 240 ARKEDNYFFALSKYQKLLEDTLTENPDFVQPSFR-LNEVQGWIKSGLRDFSISRASVDWGIPVPN----DN--------- 305 (345)
Q Consensus 240 ~r~~~~~f~~l~~~~~~L~e~l~~~~~~~~P~~~-~~~~~~wl~~gL~D~~ISR~~~~WGIpvP~----~~--------- 305 (345)
+|.++|||++++++++++++.+++. .|.|+.. .+++.+||++ ++||||||| .+||+|||. +.
T Consensus 421 ~~a~~qWFi~~~~~k~~~l~~~~~i--~w~P~~~~~~r~~~wl~~-~~DW~ISRq-R~WGtPIPvw~~~~~~~~~~~~s~ 496 (1159)
T PLN02882 421 YRAVPSWFVKVEEIKDRLLENNKQT--YWVPDYVKEKRFHNWLEN-ARDWAVSRS-RFWGTPLPIWISDDGEEVVVIGSI 496 (1159)
T ss_pred EEecceeEEEcHHHHHHHHHhhCCc--EEECCcchhhHHHHHHhc-Ccccceeec-cccCCccceEEeCCCCeEEecCcH
Confidence 9999999999999999999988776 4789988 4799999975 999999998 599999993 10
Q ss_pred --------------------------------------CCcEEEecCchhHHHHhcCCCCCCCchhhhhhCcCCCCC
Q 046127 306 --------------------------------------KQTIYVWFDALLGYISALSEDRDQPSLRTAVSSGWPASL 344 (345)
Q Consensus 306 --------------------------------------~~~iyVWfdal~gYls~~~~~~~~~~~~~~~~~~w~~~~ 344 (345)
..||+||||+.+...+.++++.+. .+.|.++||+|+
T Consensus 497 ~el~~~~~~~~~dlh~~~id~i~~p~~~~~~~~~~~r~~dVlD~WFdSg~~p~a~~~~p~e~---~~~f~~~~PaD~ 570 (1159)
T PLN02882 497 AELEKLSGVKVTDLHRHFIDHITIPSSRGPEFGVLRRVDDVFDCWFESGSMPYAYIHYPFEN---KELFEKNFPADF 570 (1159)
T ss_pred HHHHHHhCCchhhccccchhhhccccccCCchhceEecCceeeeeeccCccHHHHcCCcccC---hhHhhccCCceE
Confidence 068999999999999999987542 367888999974
No 28
>TIGR00395 leuS_arch leucyl-tRNA synthetase, archaeal and cytosolic family. The leucyl-tRNA synthetases belong to two families so broadly different that they are represented by separate models. This model includes both archaeal and cytosolic eukaryotic leucyl-tRNA synthetases; the eubacterial and mitochondrial forms differ so substantially that some other tRNA ligases score higher by this model than does any eubacterial LeuS.
Probab=100.00 E-value=5.6e-44 Score=385.39 Aligned_cols=245 Identities=23% Similarity=0.331 Sum_probs=211.4
Q ss_pred ccCCCCCCCCCCCCCEEEEccCCCCCCcCchhHHHHHHHHHHHHHHHHHcCCeEEEEcCCCCcChHHHHHHHhCC-----
Q 046127 76 YATNTDKSGTEPADPFVLTTPLYYVNAPPHMGSAYTTIAADAIARFQRLLGKKVIFITGTDEHGEKIAAAAADGG----- 150 (345)
Q Consensus 76 ~~~~~~~~~~~~~~~~~I~~~~PypnG~LHIGHar~~i~~DvlaR~lr~~G~~V~~v~G~D~~G~~I~~~A~~~g----- 150 (345)
.....|...++.+++|+|+.||||+||.|||||+++++++|+++||+||+|++|++++|+|+||+||+..|++..
T Consensus 12 ~~~~~fe~~~~~~~kf~i~~ppPy~nG~lH~GH~~~~~~~D~~aRy~Rm~G~~vl~p~G~d~~G~pi~~~aek~~~~~~~ 91 (938)
T TIGR00395 12 EEAHIFEADPDDREKFFLTMAYPYLNGVMHAGHCRTFTIPEVSARFERMKGKNVLFPLGFHVTGTPILGLAELIKRRDEL 91 (938)
T ss_pred HhCCCcccCCCCCCceEEecCCCCCCCCcccchhhhhhHHHHHHHHHHhcCCccCCCCccCCCCCchHHHHHHhhhhhhh
Confidence 333344322334688999999999999999999999999999999999999999999999999999999887621
Q ss_pred -------------------CCHHHHHHHHHHHHHHHHhhcCcccC--ccccCCChhhHHHHHHHHHHHHhCCCeeecccC
Q 046127 151 -------------------SSPSEHCDVVSQAYKTLWKDLDIAYD--KFIRTTEPKHEAIVKEFYSSVLANGDIYKADYE 209 (345)
Q Consensus 151 -------------------~~p~~~~~~~~~~~~~~l~~lgI~~D--~f~~T~~~~~~~~v~~~~~~L~~kG~iy~~~~~ 209 (345)
.+|.++++++...++++|++||+++| +.+.|+++.|.+.++++|.+|+++|+||++.++
T Consensus 92 ~~~~~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~lG~s~DW~r~~~T~dp~y~~~v~~~f~~L~e~G~iy~g~~~ 171 (938)
T TIGR00395 92 TIKNYTEVHAIPREELLKFTDPEYIVEYFSREAESACKSMGYSIDWRRSFKTTDPYYDRFIEWQMNKLKELGLIVKGEHP 171 (938)
T ss_pred ccccchhhccCCHHHHHhhcCHHHHHHHHHHHHHHHHHHhCceEECCCCccCCChhHHHHHHHHHHHHHHCCCEecCCee
Confidence 35678889999999999999999987 567799999999999999999999999999999
Q ss_pred cccccCCCCccchhhhh---------------------------------------------------------------
Q 046127 210 GLYCVNCEEYKDEKELL--------------------------------------------------------------- 226 (345)
Q Consensus 210 ~~yc~~c~~~l~d~el~--------------------------------------------------------------- 226 (345)
+.|||.|++.|+|+|+.
T Consensus 172 v~wcp~~~t~lsd~e~~~~e~~~~~~~~~ikf~~~~~~~~l~~aTtRPETl~g~tav~V~P~~~Y~~~~~~~e~~i~s~~ 251 (938)
T TIGR00395 172 VRYCPKDGNPVEDHDLLSGEGVTIVEYILIKFELEDGAFYFVAATLRPETVYGVTNCWVNPTITYVIAEVGGEKWITSKE 251 (938)
T ss_pred EeecCCCCCCCchhHhccCCccccceEEEEEEEcCCCceEEEEeeCCcchhhcceeEEECCCCcEEEEEeCCcEEEEeHH
Confidence 99999999999774210
Q ss_pred --------------------------------------------------------------------------------
Q 046127 227 -------------------------------------------------------------------------------- 226 (345)
Q Consensus 227 -------------------------------------------------------------------------------- 226 (345)
T Consensus 252 ~~~~~~~q~~~~~~~~~~~g~~l~G~~~~~P~~~~~ipil~~~~V~~~~GTGvV~~~Pah~p~Dy~~~~~l~~~~~~~gi 331 (938)
T TIGR00395 252 AFENLSYQKLKYKPIEEVPGKQFIGKKVHNPVVGPEVPILPAEFVDTTKGTGVVMSVPAHAPDDYIALEDLLHDPEYLGI 331 (938)
T ss_pred HHHhhhhcccceeEEEEEchHhccCCEEECCCCCCeeEEeecceeecCCCcceEEeCCCCCHHHHHHHHHhhhcchhcCC
Confidence
Q ss_pred --------------------------------------------------------------------------------
Q 046127 227 -------------------------------------------------------------------------------- 226 (345)
Q Consensus 227 -------------------------------------------------------------------------------- 226 (345)
T Consensus 332 ~~~~~~~~~i~ii~~~~~g~~~a~~~~~~~~i~~~~d~~~l~~a~~~~y~~~f~~G~m~~~~~~~~G~~v~ear~~i~~~ 411 (938)
T TIGR00395 332 KPVVIDIEPVPLIHTDGYGDLPAKEIVEEKGIKSQKDKNLLEEATKILYKEEYHTGVMIYNIPPYKGMKVSEAKEKVKAD 411 (938)
T ss_pred cchhcccCCccceecCCCCcccHHHHHHHhcCCCchhhhHHHHHHHHHhhhhccCceeccCCcccCCcCHHHhHHHHHHH
Confidence
Q ss_pred --------------cCCcCCCCCCCceEe-eccccccchh--HhHHHHHHHHhcCCCcccChHHHHHHHHHHhcCCCCcc
Q 046127 227 --------------ENQCCPIHLKPCVAR-KEDNYFFALS--KYQKLLEDTLTENPDFVQPSFRLNEVQGWIKSGLRDFS 289 (345)
Q Consensus 227 --------------~~~~c~~~~~pve~r-~~~~~f~~l~--~~~~~L~e~l~~~~~~~~P~~~~~~~~~wl~~gL~D~~ 289 (345)
+.+.|.|||++++.+ .++||||+++ .+++++.+++++. .+.|+..++.+.+||+ +|+|||
T Consensus 412 L~~~g~~~~~~~~~~~~v~~R~g~~~vv~~~~~QWFi~~~~~~~k~~~~~~l~~~--~~~P~~~~~~~~~~l~-~l~DW~ 488 (938)
T TIGR00395 412 LIDAGLADVMYEFSESPVICRCGTDCIVKVVEDQWFVKYSDESWKELAHECLEGM--RIIPEEVKNAFEGKID-WLKDWA 488 (938)
T ss_pred HHHCCCceEeeecCCCCcEecCCCeEEEeccCCCCeEEcCcHHHHHHHHHHHhcC--EEeCHHHHHHHHHHHh-hhhhcc
Confidence 001144778888887 9999999999 5999999999876 5799999999999997 599999
Q ss_pred cccCCCCCCcccCCCC--------CCcEEEecCchhHHHHhcC
Q 046127 290 ISRASVDWGIPVPNDN--------KQTIYVWFDALLGYISALS 324 (345)
Q Consensus 290 ISR~~~~WGIpvP~~~--------~~~iyVWfdal~gYls~~~ 324 (345)
|||+ .+||+|||.++ +.++|+||+++.+|++..+
T Consensus 489 ISRq-r~WGtpIP~d~~~~ieslsdstiY~~~~~i~~~l~~~~ 530 (938)
T TIGR00395 489 CCRR-YGLGTRLPWDEKWLIESLSDSTIYMAYYTIAHYLNKDY 530 (938)
T ss_pred cccc-cccCcccceeecEEeeecchhhhhhhhccHHHHhhccC
Confidence 9998 69999999643 4799999999999998754
No 29
>KOG1247 consensus Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=7.1e-45 Score=346.84 Aligned_cols=252 Identities=29% Similarity=0.524 Sum_probs=227.9
Q ss_pred CCCCCCCEEEEccCCCCCCcCchhHH-HHHHHHHHHHHHHHHcCCeEEEEcCCCCcChHHHHHHHhCCCCHHHHHHHHHH
Q 046127 84 GTEPADPFVLTTPLYYVNAPPHMGSA-YTTIAADAIARFQRLLGKKVIFITGTDEHGEKIAAAAADGGSSPSEHCDVVSQ 162 (345)
Q Consensus 84 ~~~~~~~~~I~~~~PypnG~LHIGHa-r~~i~~DvlaR~lr~~G~~V~~v~G~D~~G~~I~~~A~~~g~~p~~~~~~~~~ 162 (345)
+.+++..++|+.+.||+|..+|+|++ ...+.+||+|||.+.+|++..+++|+|++|+.++..|.+.|.+|+++|++++.
T Consensus 9 p~~n~rnilitsalpyvnnvphlgNIIg~vlsAdV~Aryc~~r~~~~~yicGTDEYgtatetkaleeg~tP~elcdKyh~ 88 (567)
T KOG1247|consen 9 PAPNERNILITSALPYVNNVPHLGNIIGSVLSADVFARYCPLRGPNTLYICGTDEYGTATETKALEEGLTPQELCDKYHG 88 (567)
T ss_pred cCCCccceeeecccceecccccccceeeEEeehhhhcccccCCCCceEEeccccccchhhHHHHHHccCCHHHHHHhcch
Confidence 45667889999999999999999997 67899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcCcccCccccCCChhhHHHHHHHHHHHHhCCCeeecccCcccccCCCCccchhhhhc---------------
Q 046127 163 AYKTLWKDLDIAYDKFIRTTEPKHEAIVKEFYSSVLANGDIYKADYEGLYCVNCEEYKDEKELLE--------------- 227 (345)
Q Consensus 163 ~~~~~l~~lgI~~D~f~~T~~~~~~~~v~~~~~~L~~kG~iy~~~~~~~yc~~c~~~l~d~el~~--------------- 227 (345)
.++..++.++|++|.|.+|+.+.+.+.+|.+|.+|+++|++-+....+.||..|++||+|.++.+
T Consensus 89 ihk~vy~Wf~IdfD~fgrtTT~~qT~i~Q~iF~kl~~ng~~se~tv~qLyC~vc~~fladr~veg~cp~C~yd~ARGDqc 168 (567)
T KOG1247|consen 89 IHKVVYDWFKIDFDEFGRTTTKTQTEICQDIFSKLYDNGYLSEQTVKQLYCEVCDTFLADRFVEGKCPFCGYDDARGDQC 168 (567)
T ss_pred hHHHHHHhhcccccccCcccCcchhHHHHHHhhchhhcCCcccceeeeEEehhhcccccchhhhccCCCCCCccccchhh
Confidence 99999999999999999999999999999999999999999999999999999999999998762
Q ss_pred -------------CCcCCCCCCCceEeeccccccchhHhHHHHHHHHhcCC-CcccChHHHHHHHHHHhcCCCCcccccC
Q 046127 228 -------------NQCCPIHLKPCVARKEDNYFFALSKYQKLLEDTLTENP-DFVQPSFRLNEVQGWIKSGLRDFSISRA 293 (345)
Q Consensus 228 -------------~~~c~~~~~pve~r~~~~~f~~l~~~~~~L~e~l~~~~-~~~~P~~~~~~~~~wl~~gL~D~~ISR~ 293 (345)
.+.|..|...++.+.+.|.||.|.+++++|.+|+++.. .--|..+.++..++||++||.++||||.
T Consensus 169 d~cG~l~N~~el~~pkc~ic~~~p~~~~t~h~Fl~L~kl~~~lee~~~~~~~~~~WS~Na~~it~sWlk~gl~pRCiTRD 248 (567)
T KOG1247|consen 169 DKCGKLVNAAELKIPKCKICQAGPVVRQTQHLFLSLDKLEPRLEEWLRRTLVEGDWSQNAQNITRSWLKDGLKPRCITRD 248 (567)
T ss_pred hhhhhhcCHHHhcCcchheeccCCeeeeeeEEEEEhHHhHHHHHHHHHhccccCCCccchHHHHHHHHHccccccccccc
Confidence 12344444568899999999999999999999998652 1235666788999999999999999995
Q ss_pred CCCCCcccCC--CCCCcEEEecCchhHHHHhcCCCCCCCchhhhhhCcCCC
Q 046127 294 SVDWGIPVPN--DNKQTIYVWFDALLGYISALSEDRDQPSLRTAVSSGWPA 342 (345)
Q Consensus 294 ~~~WGIpvP~--~~~~~iyVWfdal~gYls~~~~~~~~~~~~~~~~~~w~~ 342 (345)
+.||+|||- .+++|+||||||+|||+|.+.... ++|.+||.+
T Consensus 249 -LkWGtpVPle~fk~KVfYVWFDA~IGYlsit~~yt------~ew~kWwkn 292 (567)
T KOG1247|consen 249 -LKWGTPVPLEKFKDKVFYVWFDAPIGYLSITKNYT------DEWEKWWKN 292 (567)
T ss_pred -cccCCCcChhhhcccEEEEEEcCcceEEEeehhhh------HHHHHHhcC
Confidence 999999995 479999999999999999997654 468889965
No 30
>PF00133 tRNA-synt_1: tRNA synthetases class I (I, L, M and V); InterPro: IPR002300 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. The class Ia aminoacyl-tRNA synthetases consist of the isoleucyl, methionyl, valyl, leucyl, cysteinyl, and arginyl-tRNA synthetases; the class Ib include the glutamyl and glutaminyl-tRNA synthetases, and the class Ic are the tyrosyl and tryptophanyl-tRNA synthetases [].; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 1OBC_A 2AJH_B 4ARI_A 2AJG_B 4AQ7_D 2AJI_B 4ARC_A 4AS1_A 1QU3_A 1QU2_A ....
Probab=100.00 E-value=1.7e-44 Score=374.21 Aligned_cols=253 Identities=26% Similarity=0.444 Sum_probs=210.1
Q ss_pred CCCCCCEEEEccCCCCCCcCchhHHHHHHHHHHHHHHHHHcCCeEEEEcCCCCcChHHHHHHHhC-CC------------
Q 046127 85 TEPADPFVLTTPLYYVNAPPHMGSAYTTIAADAIARFQRLLGKKVIFITGTDEHGEKIAAAAADG-GS------------ 151 (345)
Q Consensus 85 ~~~~~~~~I~~~~PypnG~LHIGHar~~i~~DvlaR~lr~~G~~V~~v~G~D~~G~~I~~~A~~~-g~------------ 151 (345)
..++++|+|+.||||+||.|||||++++++.|+++||+||+|++|.++.|+|+||+||+..+++. +.
T Consensus 19 ~~~~~~f~i~~~PPy~nG~lH~GH~~~~~~~D~i~Ry~rm~G~~v~~~~G~D~~Glpie~~vek~l~~~~~~~~~~~~~~ 98 (601)
T PF00133_consen 19 NKNKPKFFIHDPPPYANGDLHIGHALNKTIKDIIARYKRMQGYNVLFPPGWDCHGLPIEAKVEKKLGIKEKKDRKDLGRE 98 (601)
T ss_dssp TTTSGEEEEEE---BTSSS-BHHHHHHHHHHHHHHHHHHCTTSEEEEEEEEB--SHHHHHHHHHHTTTTSHHHCSCSTHH
T ss_pred CCCCCcEEEEeCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCcEeCCCCCcCCCCcchhhhHHHhhcccccccccccccc
Confidence 34578999999999999999999999999999999999999999999999999999999998863 32
Q ss_pred ----CHHHHHHHHHHHHHHHHhhcCcccC--ccccCCChhhHHHHHHHHHHHHhCCCeeecccCcccccCCCCccchhhh
Q 046127 152 ----SPSEHCDVVSQAYKTLWKDLDIAYD--KFIRTTEPKHEAIVKEFYSSVLANGDIYKADYEGLYCVNCEEYKDEKEL 225 (345)
Q Consensus 152 ----~p~~~~~~~~~~~~~~l~~lgI~~D--~f~~T~~~~~~~~v~~~~~~L~~kG~iy~~~~~~~yc~~c~~~l~d~el 225 (345)
.++++++++.+.++++|++||++.| +.+.|+++.|.+.++++|.+|+++|+||++.++++||+.|++.|+++|+
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~lG~~~Dw~~~y~T~d~~y~~~v~~~F~~l~~kglIyr~~~pv~w~p~~~t~lsd~Ev 178 (601)
T PF00133_consen 99 EFREECREWAEEFIEEQKEQFKRLGVSIDWDREYFTMDPEYEKFVWWQFKKLYEKGLIYRGKKPVNWCPSCQTALSDHEV 178 (601)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTT--SECTCEEETTSHHHHHHHHHHHHHHHHTTSEEEEEEEEEEETTTTEEE-GGGE
T ss_pred cchhhhcchhhhhhhhhhhhhhheeeecccCCceEECCccHhHHHHHHHHHHHhcCcEEeeCCCCCcCcccccchhhhhc
Confidence 1457889999999999999998776 7788999999999999999999999999999999999999999987420
Q ss_pred --------------------------------------------------------------------------------
Q 046127 226 -------------------------------------------------------------------------------- 225 (345)
Q Consensus 226 -------------------------------------------------------------------------------- 225 (345)
T Consensus 179 ~~~~~~~~~~~v~f~~~~~~~~~l~i~TtrPeTl~~~~ai~vnP~~~Y~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~~ 258 (601)
T PF00133_consen 179 EYKEVKSPSIYVKFPLKDGEEVYLVIWTTRPETLPGNTAIAVNPDFDYVINGERYIVAKDLVEKLSKQEKTKLEDFRGKE 258 (601)
T ss_dssp EEEEEEEEEEEEEEEESSSSEEEEEEEES-GGGGGG-BEEEE-TTSEEEETTEEEEEEHHHHHHHHTTTSSSEEEEECHH
T ss_pred ccccccCceEEEEEEecCccceEEEEEechhhHHhCCeeEEECCCccceeCCeeehHHHHHHHHHHhhhhhcccccCcce
Confidence
Q ss_pred --------------------------------------------------------------------------------
Q 046127 226 -------------------------------------------------------------------------------- 225 (345)
Q Consensus 226 -------------------------------------------------------------------------------- 225 (345)
T Consensus 259 L~g~~~~~P~~~~~~~vi~~~~V~~~~GTGiV~~~Pah~~~Dy~~~~~~~l~~~~~id~~G~~~~~~~~~~G~~v~~ar~ 338 (601)
T PF00133_consen 259 LVGLKYIHPLTGREVPVIPDDFVDMDKGTGIVHSAPAHGPDDYEIGKKHNLPIINPIDEDGRFTEEAGKFKGMKVFEARE 338 (601)
T ss_dssp HTTSEEE-TTSSSSEEEEEETTS-SSSTTSEEEE-TTT-HHHHHHHHHHHHCCGCCCCCTSTBBSCCSTTTTSBHHHHHH
T ss_pred ecCcEeccccccceeEEEcccccccccchhhhhhcccCCHHHHHHHhhcCceeeEecCCCceEeecccccCCceeeeccH
Confidence
Q ss_pred ------h-------------cCCcCCCCCCCceEeeccccccchhHhHHHHHHHHhcCCCcccChHHHHHHHHHHhcCCC
Q 046127 226 ------L-------------ENQCCPIHLKPCVARKEDNYFFALSKYQKLLEDTLTENPDFVQPSFRLNEVQGWIKSGLR 286 (345)
Q Consensus 226 ------~-------------~~~~c~~~~~pve~r~~~~~f~~l~~~~~~L~e~l~~~~~~~~P~~~~~~~~~wl~~gL~ 286 (345)
. ..++|++|++|++.+.++|||++++++++++.+.+++. .+.|+..++.+.+||.. ++
T Consensus 339 ~ii~~L~~~g~l~~~~~~~~~~p~c~R~~~~ii~~~~~QWFi~~~~~k~~~l~~~~~i--~~~P~~~~~~~~~~i~~-l~ 415 (601)
T PF00133_consen 339 KIIEDLKEKGLLLKIEEIEHSYPHCWRSGTPIIPRLTDQWFIKYDDWKKKALEALEKI--KFYPESYRKRFENWIDN-LR 415 (601)
T ss_dssp HHHHHHHHTTSEEEEEEEEEEEEEETTTSCBEEEEEEEEEEEEHHHHHHHHHHHHHTS--EESSSTCHHHHHHHHHT---
T ss_pred HHHHHHHHhhhhccccccccccceecCCCCEEEecccceeEEecHHhHHHHHhhcccc--eEEcccchhhhhhhccc-cc
Confidence 0 13579999999999999999999999999999999976 57899999999999975 99
Q ss_pred CcccccCCCCCCcccCC----C--------------------------------------------CCCcEEEecCchhH
Q 046127 287 DFSISRASVDWGIPVPN----D--------------------------------------------NKQTIYVWFDALLG 318 (345)
Q Consensus 287 D~~ISR~~~~WGIpvP~----~--------------------------------------------~~~~iyVWfdal~g 318 (345)
||||||| .+||+|||. + +..+++||||+.+.
T Consensus 416 DWcISRQ-R~WG~PIPiw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvlD~WfdSg~~ 494 (601)
T PF00133_consen 416 DWCISRQ-RYWGTPIPIWYCEDCGEVLVIESTIELIADRVEKEGIDAWLHKPAEDKLPCCGGELRRDTDVLDTWFDSGLW 494 (601)
T ss_dssp EEE-EES-SSSSEBETEEEETTSEEEECCGGHHHHHHHHSTHHHHSCTSSHHHHHHHTTTSSEEEEHS-EE-HHHHHCTC
T ss_pred cchhhcc-CCCCccceeeecccCcccccccccccccccccccccccccccccccccccccccceEEeeeeccccccccCC
Confidence 9999999 699999993 0 14699999999988
Q ss_pred HHHhcCCCCCCCchhhhhhCcCCCCC
Q 046127 319 YISALSEDRDQPSLRTAVSSGWPASL 344 (345)
Q Consensus 319 Yls~~~~~~~~~~~~~~~~~~w~~~~ 344 (345)
+++.++.+.++ .+++..++|.|+
T Consensus 495 ~~~~~~~~~~~---~~~~~~~~P~D~ 517 (601)
T PF00133_consen 495 PFAVLGWPEND---REEFEYWYPVDL 517 (601)
T ss_dssp HHHHTTSTTCS---CHHHHHHSSBSE
T ss_pred ccccccccccc---chhccccCCccc
Confidence 88888766542 377888899874
No 31
>PTZ00427 isoleucine-tRNA ligase, putative; Provisional
Probab=100.00 E-value=2.5e-43 Score=384.27 Aligned_cols=148 Identities=16% Similarity=0.154 Sum_probs=130.0
Q ss_pred ccccCCCCCCCC---CCCCCEEEEccCCCCCCcCchhHHHHHHHHHHHHHHHHHcCCeEEEEcCCCCcChHHHHHHHhC-
Q 046127 74 CSYATNTDKSGT---EPADPFVLTTPLYYVNAPPHMGSAYTTIAADAIARFQRLLGKKVIFITGTDEHGEKIAAAAADG- 149 (345)
Q Consensus 74 ~~~~~~~~~~~~---~~~~~~~I~~~~PypnG~LHIGHar~~i~~DvlaR~lr~~G~~V~~v~G~D~~G~~I~~~A~~~- 149 (345)
-|.....|.... .++++|+++.||||+||.|||||++++++.|+++||+||+||+|.+++|||+||+||+..+++.
T Consensus 84 ~W~e~~~f~~~~~~~~~~~~Fv~~~gPPyanG~lHiGHal~~tikDii~Ry~rm~G~~V~~~~GwD~hGlPiE~~vEk~l 163 (1205)
T PTZ00427 84 YWKSIDAFNTSNKLAKNKKAYIFYDGPPFATGLPHYGHLLAGIIKDCVTRYFYQCGFSVERKFGWDCHGLPIEYEIEKEN 163 (1205)
T ss_pred HHHhCCCcccCccccCCCCcEEEecCCCCCCCCcchhHHHHHHHHHHHHHHHHcCCCeeccCCccCCCCcHHHHHHHHHh
Confidence 355556664322 3467799999999999999999999999999999999999999999999999999999999862
Q ss_pred CC---------C-------HHHHHHHHHHHHHHHHhhcC--cccCccccCCChhhHHHHHHHHHHHHhCCCeeecccCcc
Q 046127 150 GS---------S-------PSEHCDVVSQAYKTLWKDLD--IAYDKFIRTTEPKHEAIVKEFYSSVLANGDIYKADYEGL 211 (345)
Q Consensus 150 g~---------~-------p~~~~~~~~~~~~~~l~~lg--I~~D~f~~T~~~~~~~~v~~~~~~L~~kG~iy~~~~~~~ 211 (345)
|+ . ++++++++.+.+++++++|| +++|+.+.|+++.|.+.++++|.+|+++|+||++.++++
T Consensus 164 g~~~k~~i~~~g~~~f~e~c~~~~~~~~~~~~~~~~rlG~~iDw~~~y~T~d~~~~~~v~~~f~~L~ekGlIYr~~k~V~ 243 (1205)
T PTZ00427 164 NINKKEDILKMGIDVYNEKCRGIVLKYSNEWVKTVERIGRWIDFKNDYKTMDKTFMESVWWVFSELYKNNYVYKSFKVMP 243 (1205)
T ss_pred CCCcccchhhcCHHHHHHHHHHHHHHHHHHHHHHHHHhCcEEecCCCcCcCCHHHHHHHHHHHHHHHHCCCEEecceeec
Confidence 32 1 35788899999999999999 667799999999999999999999999999999999999
Q ss_pred cccCCCCccc
Q 046127 212 YCVNCEEYKD 221 (345)
Q Consensus 212 yc~~c~~~l~ 221 (345)
|||.|+|.|+
T Consensus 244 wcp~c~TaLS 253 (1205)
T PTZ00427 244 YSCKCNTPIS 253 (1205)
T ss_pred cCCCCCCchh
Confidence 9999987654
No 32
>PLN02843 isoleucyl-tRNA synthetase
Probab=100.00 E-value=2.7e-42 Score=372.73 Aligned_cols=135 Identities=24% Similarity=0.361 Sum_probs=122.5
Q ss_pred CCCCEEEEccCCCCCCcCchhHHHHHHHHHHHHHHHHHcCCeEEEEcCCCCcChHHHHHHHhC-------CCCHHH----
Q 046127 87 PADPFVLTTPLYYVNAPPHMGSAYTTIAADAIARFQRLLGKKVIFITGTDEHGEKIAAAAADG-------GSSPSE---- 155 (345)
Q Consensus 87 ~~~~~~I~~~~PypnG~LHIGHar~~i~~DvlaR~lr~~G~~V~~v~G~D~~G~~I~~~A~~~-------g~~p~~---- 155 (345)
.+++|+|++||||+||.|||||+++.++.|+++||+||+|++|.+++|+|+||+||+.++++. +.++.+
T Consensus 30 ~~~~f~i~~~PPy~nG~lHiGHa~~~~lkDii~Ry~rm~G~~v~~~pG~D~hGlpie~~vek~l~~~~~~~~~~~~f~~~ 109 (974)
T PLN02843 30 NGESFTLHDGPPYANGDLHIGHALNKILKDFINRYQLLQGKKVHYVPGWDCHGLPIELKVLQSLDQEARKELTPIKLRAK 109 (974)
T ss_pred CCCCEEEeCCCCCCCCCcchhHHHHHHHHHHHHHHHHhcCCccccCCccCCCCcHHHHHHHHHhchhhhccCCHHHHHHH
Confidence 357799999999999999999999999999999999999999999999999999999988542 345554
Q ss_pred ---HHHHHHHHHHHHHhhcCc--ccCccccCCChhhHHHHHHHHHHHHhCCCeeecccCcccccCCCCccc
Q 046127 156 ---HCDVVSQAYKTLWKDLDI--AYDKFIRTTEPKHEAIVKEFYSSVLANGDIYKADYEGLYCVNCEEYKD 221 (345)
Q Consensus 156 ---~~~~~~~~~~~~l~~lgI--~~D~f~~T~~~~~~~~v~~~~~~L~~kG~iy~~~~~~~yc~~c~~~l~ 221 (345)
+++++.+.++++|++||+ ++|+.+.|+++.|...++++|.+|+++|+||++.++++||++|++.|+
T Consensus 110 c~~~~~~~~~~~~~~~~~lG~~~Dw~~~y~T~d~~~~~~v~~~f~~l~~~GlIyr~~kpV~Wcp~~~Tala 180 (974)
T PLN02843 110 AAKFAKKTVDTQRESFKRYGVWGDWENPYLTLDPEYEAAQIEVFGQMFLNGYIYRGRKPVHWSPSSRTALA 180 (974)
T ss_pred HHHHHHHHHHHHHHHHHHhCCceecCCCCccCCHHHHHHHHHHHHHHHHCCCEEecceeeeecCCCCCcch
Confidence 467777888999999999 566889999999999999999999999999999999999999998774
No 33
>PRK13804 ileS isoleucyl-tRNA synthetase; Provisional
Probab=100.00 E-value=3e-42 Score=372.17 Aligned_cols=137 Identities=23% Similarity=0.260 Sum_probs=125.5
Q ss_pred CCCCCEEEEccCCCCCCcCchhHHHHHHHHHHHHHHHHHcCCeEEEEcCCCCcChHHHHHHHhCC----CC-----H---
Q 046127 86 EPADPFVLTTPLYYVNAPPHMGSAYTTIAADAIARFQRLLGKKVIFITGTDEHGEKIAAAAADGG----SS-----P--- 153 (345)
Q Consensus 86 ~~~~~~~I~~~~PypnG~LHIGHar~~i~~DvlaR~lr~~G~~V~~v~G~D~~G~~I~~~A~~~g----~~-----p--- 153 (345)
.++++|+|+.||||+||.|||||++++++.|+++||+||+|++|.++.|||+||+||+.++++.. .. +
T Consensus 51 ~~~~~f~l~dgPPyanG~lHiGHaln~~lkDii~Ry~rm~G~~v~~~pGwD~hGlPiE~~vek~~~~~~~~~~~~~~~~f 130 (961)
T PRK13804 51 KGRPKFVLHDGPPYANGNIHIGHALNKILKDVIVRSKQMLGFDANYVPGWDCHGLPIEWKIEEKYRAKGKNKDEVPVAEF 130 (961)
T ss_pred CCCCcEEEeCCCCCCCCCccHHHHHHHHHHHHHHHHHHhcCCcccCCCCcCCCCcHHHHHHHHhhhhcCCChHhCCHHHH
Confidence 45688999999999999999999999999999999999999999999999999999999887653 32 2
Q ss_pred ----HHHHHHHHHHHHHHHhhcCcccC--ccccCCChhhHHHHHHHHHHHHhCCCeeecccCcccccCCCCccch
Q 046127 154 ----SEHCDVVSQAYKTLWKDLDIAYD--KFIRTTEPKHEAIVKEFYSSVLANGDIYKADYEGLYCVNCEEYKDE 222 (345)
Q Consensus 154 ----~~~~~~~~~~~~~~l~~lgI~~D--~f~~T~~~~~~~~v~~~~~~L~~kG~iy~~~~~~~yc~~c~~~l~d 222 (345)
+++++++.+.++++|++||++.| +.+.|+++.|...++++|.+|+++|+||++..+++||+.|++.|++
T Consensus 131 ~~~c~~~a~~~i~~~~~~~~rlG~~~Dw~~~y~T~d~~y~~~~~~~F~~l~~kGliyr~~kpV~Wcp~~~TaLa~ 205 (961)
T PRK13804 131 RKECREYALSWIDVQREEFKRLGVLGDWDNPYTTMDFHAEARIAREFGKFAAKGQLYRGSKPVMWSVVERTALAE 205 (961)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCceecCCCCcCcCCHHHHHHHHHHHHHHHHCCCEEeCCcceecCCCCCCCccc
Confidence 35778888999999999999855 8889999999999999999999999999999999999999998865
No 34
>COG0060 IleS Isoleucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.3e-42 Score=363.78 Aligned_cols=265 Identities=22% Similarity=0.310 Sum_probs=221.9
Q ss_pred ccccccccccccccccccccccccccCCCCCC----CCCCCCCEEEEccCCCCCCcCchhHHHHHHHHHHHHHHHHHcCC
Q 046127 52 THFRNRLKFRQNLFSLSKGAVFCSYATNTDKS----GTEPADPFVLTTPLYYVNAPPHMGSAYTTIAADAIARFQRLLGK 127 (345)
Q Consensus 52 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~I~~~~PypnG~LHIGHar~~i~~DvlaR~lr~~G~ 127 (345)
|.|+.+-+|... ++.-+.-|...+.+.+ ..+++++|++.++|||+||.+|||||.|.++.|++.||..|+||
T Consensus 12 T~fpmr~~l~~~----E~~i~~~W~e~~iy~k~~~~~~~g~~~FvfhDGPPyANG~iHiGHalnKilKDiI~Ry~~m~G~ 87 (933)
T COG0060 12 TDFPMRANLPKK----EPKILKFWEENDIYEKIREERNKGKPKFVLHDGPPYANGNIHIGHALNKILKDIIVRYKTMQGY 87 (933)
T ss_pred CCCCccCChhhc----CHHHHHHHHHhhHHHHHHHHHhCCCCcEEEeCCCCCCCCCcchhhhHHHhhhhhhhhhhcccCC
Confidence 445555444332 2222333554444421 23567999999999999999999999999999999999999999
Q ss_pred eEEEEcCCCCcChHHHHHHHh-CCC--------C-------HHHHHHHHHHHHHHHHhhcCccc--CccccCCChhhHHH
Q 046127 128 KVIFITGTDEHGEKIAAAAAD-GGS--------S-------PSEHCDVVSQAYKTLWKDLDIAY--DKFIRTTEPKHEAI 189 (345)
Q Consensus 128 ~V~~v~G~D~~G~~I~~~A~~-~g~--------~-------p~~~~~~~~~~~~~~l~~lgI~~--D~f~~T~~~~~~~~ 189 (345)
+|.++.||||||+||+.++++ .|. . .++++.++.+.+++++++||+.. |+-|.|+++.|.+.
T Consensus 88 ~v~~~pGWDcHGLPIE~~vek~lg~~k~~i~~~~~~efr~~Cr~~a~~~v~~q~~~f~RLGv~~Dw~npY~Tmd~~ye~~ 167 (933)
T COG0060 88 DVPYVPGWDCHGLPIELKVEKKLGIGKKDIESFGVEEFREKCREFALEQVDEQKEQFKRLGVWGDWENPYKTMDPSYEES 167 (933)
T ss_pred cCCCCCCCcCCCchHHHHHHHHhCCCcchhhhcCHHHHHHHHHHHHHHHHHHHHHHHHhheEeeccCCCeecCCHHHHHH
Confidence 999999999999999988876 342 1 23567778899999999999865 58899999999999
Q ss_pred HHHHHHHHHhCCCeeecccCcccccCCCCccchhhh--------------------------------------------
Q 046127 190 VKEFYSSVLANGDIYKADYEGLYCVNCEEYKDEKEL-------------------------------------------- 225 (345)
Q Consensus 190 v~~~~~~L~~kG~iy~~~~~~~yc~~c~~~l~d~el-------------------------------------------- 225 (345)
+.++|.+|+++|+||++..+++||++|++.|+++|+
T Consensus 168 ~~~~f~~~~~kGllyrg~Kpv~wsp~c~TaLAeaEvey~d~~dpSIyV~F~v~~~~~~~~~~lviWTTTPWTLPaN~aia 247 (933)
T COG0060 168 VWWAFKELYEKGLLYRGYKPVPWSPRCETALAEAEVEYGDVKDPSIYVKFPVKDEGLDENAYLVIWTTTPWTLPANLAIA 247 (933)
T ss_pred HHHHHHHHHHCCCeecCCeeeeecCCCCcchhhhhhcccccCCceEEEEEEeccCCCCCCcEEEEEeCCCCCchhcceeE
Confidence 999999999999999999999999999999976320
Q ss_pred --------------------------------------------------------------------------------
Q 046127 226 -------------------------------------------------------------------------------- 225 (345)
Q Consensus 226 -------------------------------------------------------------------------------- 225 (345)
T Consensus 248 v~pd~~Y~lv~~~~~~~IlA~~lve~~~~~~~~~~~~vl~~~kG~~Leg~~y~hPf~~~~~~~~~~v~~gd~VT~d~GTG 327 (933)
T COG0060 248 VHPDLDYVLVEVNGEKLILAKALVESVAKKAGVEDYEVLETFKGSELEGLRYEHPFYDFVYDRAFPVILGDHVTLDDGTG 327 (933)
T ss_pred eCCCcceEEEEECCEEEEEhHHHHHHHHHHcCCcceEEeEEeehhhhCCCEeeCCcccccccceeeEEecCeEecCCCcc
Confidence
Q ss_pred ----------------------------------------------------------------------hcCCcCCCCC
Q 046127 226 ----------------------------------------------------------------------LENQCCPIHL 235 (345)
Q Consensus 226 ----------------------------------------------------------------------~~~~~c~~~~ 235 (345)
+.+++||||.
T Consensus 328 ~VHtAPghGeeDy~vg~~~g~l~v~~pVD~~G~yt~~~~~~~G~~v~dAn~~Ii~~Lk~~g~Ll~~e~i~HsYPhcWR~k 407 (933)
T COG0060 328 LVHTAPGHGEEDYEVGKKYGLLEVLNPVDDNGRYTEEAPKYEGLFVKDANKKIIEDLKEKGNLLKSEKIEHSYPHCWRTK 407 (933)
T ss_pred ceecCCCCCHHHHHHHHHcCCcCCccccCCCccccccchhhCCceeccCCHHHHHHHHhCCceeeeeeEEeCCCcccCCC
Confidence 0167899999
Q ss_pred CCceEeeccccccchhHhHHHHHHHHhcCCCcccChHHHHHHHHHHhcCCCCcccccCCCCCCcccCC----C-------
Q 046127 236 KPCVARKEDNYFFALSKYQKLLEDTLTENPDFVQPSFRLNEVQGWIKSGLRDFSISRASVDWGIPVPN----D------- 304 (345)
Q Consensus 236 ~pve~r~~~~~f~~l~~~~~~L~e~l~~~~~~~~P~~~~~~~~~wl~~gL~D~~ISR~~~~WGIpvP~----~------- 304 (345)
+|+.+|.++|||++++++++++++-+++. .|.|+...+++.+||. +.+||||||| ..||+|||. +
T Consensus 408 tPlIyRAt~QWFi~v~~~r~~~l~~i~~v--~w~P~~~~~R~~~mve-~r~DW~ISRQ-R~WGvPiPi~~~~~~g~~~~~ 483 (933)
T COG0060 408 TPLIYRATPQWFVSVDKLRDKMLKEINKV--NWVPDWGKNRFGNMVE-NRPDWCISRQ-RYWGVPIPVWYCKETGEILVI 483 (933)
T ss_pred CeeEEeecchheeEHHHHHHHHHHHHhcc--eEEChhHHHHHHHHHc-CCCcceeecc-ccCCCceeEEEECCCCCeecc
Confidence 99999999999999999999999777755 5789999999999996 5899999999 599999992 0
Q ss_pred -----------------------------------------CCCcEEEecCchhHHHHhcC
Q 046127 305 -----------------------------------------NKQTIYVWFDALLGYISALS 324 (345)
Q Consensus 305 -----------------------------------------~~~~iyVWfdal~gYls~~~ 324 (345)
...+++||||+...+.+.+.
T Consensus 484 ~~El~e~~~~~~~~~g~~~w~~~~idel~~~~~~~g~~~~rv~DvlDVWFDSGs~~~a~~~ 544 (933)
T COG0060 484 TEELEELVGQLVEEKGIDDWHRPDIDELLPPCPEDGKEYRRVPDVLDVWFDSGSTPYAVLH 544 (933)
T ss_pred HHHHHHHHHHHhhhcCchhhhccchHhhcCCCCCCcceeEecCcceEEEEcCCCCcccccC
Confidence 14689999999999988887
No 35
>TIGR00396 leuS_bact leucyl-tRNA synthetase, eubacterial and mitochondrial family. The leucyl-tRNA synthetases belong to two families so broadly different that they are represented by separate models. This model includes both eubacterial and mitochondrial leucyl-tRNA synthetases. It generates higher scores for some valyl-tRNA synthetases than for any archaeal or eukaryotic cytosolic leucyl-tRNA synthetase. Note that the enzyme from Aquifex aeolicus is split into alpha and beta chains; neither chain is long enough to score above the trusted cutoff, but the alpha chain scores well above the noise cutoff. The beta chain must be found by a model and search designed for partial length matches.
Probab=100.00 E-value=6e-42 Score=365.64 Aligned_cols=196 Identities=18% Similarity=0.262 Sum_probs=187.5
Q ss_pred CCCCCEEEEccCCCCCCcCchhHHHHHHHHHHHHHHHHHcCCeEEEEcCCCCcChHHHHHHHhCCCCHHHHHHHHHHHHH
Q 046127 86 EPADPFVLTTPLYYVNAPPHMGSAYTTIAADAIARFQRLLGKKVIFITGTDEHGEKIAAAAADGGSSPSEHCDVVSQAYK 165 (345)
Q Consensus 86 ~~~~~~~I~~~~PypnG~LHIGHar~~i~~DvlaR~lr~~G~~V~~v~G~D~~G~~I~~~A~~~g~~p~~~~~~~~~~~~ 165 (345)
.++++|+|+++||||||.|||||+++++++|+++||+||+|++|.+++|+|+||+||+.+|++.|++|.++++++.+.|+
T Consensus 26 ~~k~k~~v~~~pPy~nG~lHiGH~~~~~~~Dvi~Ry~rm~G~~V~~~~G~D~~Glpie~~a~~~g~~p~~~~~~~~~~~~ 105 (842)
T TIGR00396 26 SNKPKYYILDMFPYPSGALHMGHVRNYTITDVLSRYYRMKGYNVLHPMGWDAFGLPAENAAIKRGIHPAKWTYENIANMK 105 (842)
T ss_pred CCCCCEEEEcCCCCCCCccccchhHHHHHHHHHHHHHHhcCCceeccCCcCCCChHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 35678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcCcccC--ccccCCChhhHHHHHHHHHHHHhCCCeeecccCcccccCCCCccchhhhhcCCcCCCCCCCceEeec
Q 046127 166 TLWKDLDIAYD--KFIRTTEPKHEAIVKEFYSSVLANGDIYKADYEGLYCVNCEEYKDEKELLENQCCPIHLKPCVARKE 243 (345)
Q Consensus 166 ~~l~~lgI~~D--~f~~T~~~~~~~~v~~~~~~L~~kG~iy~~~~~~~yc~~c~~~l~d~el~~~~~c~~~~~pve~r~~ 243 (345)
++|++||+++| ++++|+++.|++.++++|.+|+++|+||++..+++||+.|+++|++.|+...+.|++||.+++.+++
T Consensus 106 ~~~~~lG~~~Dw~~~~~T~d~~y~~~~~~~F~~L~~kGliy~~~~~v~wcp~~~t~La~~ev~~~g~~~~~g~~v~~~~~ 185 (842)
T TIGR00396 106 KQLQALGFSYDWDREIATCDPEYYKWTQWIFLELFEKGLAYVKEADVNWCPNDGTVLANEQVDSDGRSWRGGTPVEKKEL 185 (842)
T ss_pred HHHHHhCCcccCCCCcccCCHHHHHHHHHHHHHHHHCCCeEeeccceEEeCCCCCCccHHHHhhcCccccCCCcceEeec
Confidence 99999999876 7899999999999999999999999999999999999999999999999655799999999999999
Q ss_pred cccccchhHhHHHHHHHHhcCCCcccChHHHHHHHHHHhc
Q 046127 244 DNYFFALSKYQKLLEDTLTENPDFVQPSFRLNEVQGWIKS 283 (345)
Q Consensus 244 ~~~f~~l~~~~~~L~e~l~~~~~~~~P~~~~~~~~~wl~~ 283 (345)
+||||+|++|+++|.+++++.+ -||+.++++.++||..
T Consensus 186 ~~~f~~i~~~~~~l~~~l~~~~--~wp~~v~~~q~~wig~ 223 (842)
T TIGR00396 186 KQWFLKITAYAEELLNDLEELD--HWPESVKEMQRNWIGK 223 (842)
T ss_pred ceeEEehhhhHHHHHHHHhhhc--cccHHHHHHHHhcccc
Confidence 9999999999999999999885 3899999999999974
No 36
>PLN02563 aminoacyl-tRNA ligase
Probab=100.00 E-value=1.4e-41 Score=364.74 Aligned_cols=205 Identities=20% Similarity=0.287 Sum_probs=191.0
Q ss_pred cccCCCCCCC---CCCCCCEEEEccCCCCCCc-CchhHHHHHHHHHHHHHHHHHcCCeEEEEcCCCCcChHHHHHHHhCC
Q 046127 75 SYATNTDKSG---TEPADPFVLTTPLYYVNAP-PHMGSAYTTIAADAIARFQRLLGKKVIFITGTDEHGEKIAAAAADGG 150 (345)
Q Consensus 75 ~~~~~~~~~~---~~~~~~~~I~~~~PypnG~-LHIGHar~~i~~DvlaR~lr~~G~~V~~v~G~D~~G~~I~~~A~~~g 150 (345)
|.....|... ..++++|+|++++|||||. |||||+++++++|+++||+||+|++|++++|+|+||+||+.+|.+.|
T Consensus 93 W~e~~~f~~~~~~~~~k~k~~v~~~~PYpnG~~lHiGH~~~y~~~DviaRy~Rm~G~~Vl~~~G~D~~GlPiE~~a~~~g 172 (963)
T PLN02563 93 WEENRTFRTPDDVDTSKPKFYVLDMFPYPSGAGLHVGHPEGYTATDILARYKRMQGYNVLHPMGWDAFGLPAEQYAIETG 172 (963)
T ss_pred HHhCCCccccccccCCCCCEEEEeCCCCCCCcccchhhHHHHHHHHHHHHHHHhcCCeecccccccccCcHHHHHHHHcC
Confidence 5545555322 3456889999999999996 99999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHhhcCcccC--ccccCCChhhHHHHHHHHHHHHhCCCeeecccCcccccCCCCccchhhhhcC
Q 046127 151 SSPSEHCDVVSQAYKTLWKDLDIAYD--KFIRTTEPKHEAIVKEFYSSVLANGDIYKADYEGLYCVNCEEYKDEKELLEN 228 (345)
Q Consensus 151 ~~p~~~~~~~~~~~~~~l~~lgI~~D--~f~~T~~~~~~~~v~~~~~~L~~kG~iy~~~~~~~yc~~c~~~l~d~el~~~ 228 (345)
..|+++++++++.|+++|++||+++| ++++|+++.|+..++++|.+|+++|+||+++.+++||+.|+++|++.|+++
T Consensus 173 ~~p~~~~~~~i~~~~~q~~~lG~s~DW~r~~~T~dp~y~~~~q~~F~~L~~~GliY~~~~~v~wcp~~~T~La~~Ev~~- 251 (963)
T PLN02563 173 THPKITTLKNIARFRSQLKSLGFSYDWDREISTTEPEYYKWTQWIFLQLLKRGLAYQAEVPVNWCPALGTVLANEEVVD- 251 (963)
T ss_pred CChHHhHHHHHHHHHHHHHHhCcEeeCCCCeecCCHHHHHHHHHHHHHHHHCCCEEeeeeeeeecCCcCCCCCHHHhhc-
Confidence 99999999999999999999999887 899999999999999999999999999999999999999999999999975
Q ss_pred CcCCCCCCCceEeeccccccchhHhHHHHHHHHhcCCCcccChHHHHHHHHHHhc
Q 046127 229 QCCPIHLKPCVARKEDNYFFALSKYQKLLEDTLTENPDFVQPSFRLNEVQGWIKS 283 (345)
Q Consensus 229 ~~c~~~~~pve~r~~~~~f~~l~~~~~~L~e~l~~~~~~~~P~~~~~~~~~wl~~ 283 (345)
++|++|+.+++.++++||||+|++|+++|+++++..+ ||+.+++++++||..
T Consensus 252 ~~~~~~~~~~~~~~~~q~f~~it~ya~~L~~~l~~~~---wp~~v~~~q~nwiG~ 303 (963)
T PLN02563 252 GLSERGGHPVIRKPMRQWMLKITAYADRLLEDLDDLD---WPESIKEMQRNWIGR 303 (963)
T ss_pred CCCcCCCCceEEEecceeEEecchhHHHHHHhhhhcC---CCHHHHHHHHHhccc
Confidence 7899999999999999999999999999999998762 799999999999974
No 37
>PRK00390 leuS leucyl-tRNA synthetase; Validated
Probab=100.00 E-value=3e-41 Score=359.28 Aligned_cols=205 Identities=21% Similarity=0.302 Sum_probs=189.0
Q ss_pred cccCCCCCCCCCCCCCEEEEccCCCCCCcCchhHHHHHHHHHHHHHHHHHcCCeEEEEcCCCCcChHHHHHHHhCCCCHH
Q 046127 75 SYATNTDKSGTEPADPFVLTTPLYYVNAPPHMGSAYTTIAADAIARFQRLLGKKVIFITGTDEHGEKIAAAAADGGSSPS 154 (345)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~I~~~~PypnG~LHIGHar~~i~~DvlaR~lr~~G~~V~~v~G~D~~G~~I~~~A~~~g~~p~ 154 (345)
|.....|......+++++|+++||||||.|||||+++++++|+++||+||+|++|.+++|+|+||+||+.+|++.|++|.
T Consensus 18 W~~~~~f~~~~~~~~~~~i~~~pPy~nG~lHiGH~~~~~~~Dii~Ry~rm~G~~V~~~~G~D~~Glpie~~a~~~g~~~~ 97 (805)
T PRK00390 18 WEENKTFKTTEDSSKKYYVLDMFPYPSGGLHMGHVRNYTIGDVIARYKRMQGYNVLHPMGWDAFGLPAENAAIKTGTHPA 97 (805)
T ss_pred HHHCCCcccCccCCCCEEEEccCCCCCCCcchhhhHHHHHHHHHHHHHHhcCCcccccCccCCCCCHHHHHHHHcCCCHH
Confidence 33333443222234579999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhcCcccC--ccccCCChhhHHHHHHHHHHHHhCCCeeecccCcccccCCCCccchhhhhcCCcCC
Q 046127 155 EHCDVVSQAYKTLWKDLDIAYD--KFIRTTEPKHEAIVKEFYSSVLANGDIYKADYEGLYCVNCEEYKDEKELLENQCCP 232 (345)
Q Consensus 155 ~~~~~~~~~~~~~l~~lgI~~D--~f~~T~~~~~~~~v~~~~~~L~~kG~iy~~~~~~~yc~~c~~~l~d~el~~~~~c~ 232 (345)
++++++.+.|+++|++||+++| .+++|+++.|.+.++++|.+|+++|+||++..+++||+.|+++|++.|+.+ ++|+
T Consensus 98 ~~~~~~~~~~~~~~~~lGi~~Dw~~~~~T~~~~~~~~v~~~f~~L~~~Gliy~~~~~v~wcp~~~t~La~~ev~~-~~~~ 176 (805)
T PRK00390 98 EWTYENIANMKKQLKSLGFSYDWSREIATCDPEYYKWTQWIFLKLYEKGLAYRKESPVNWCPVDGTVLANEQVID-GRCW 176 (805)
T ss_pred HHHHHHHHHHHHHHHHhCCcccCCCCeecCCHHHHHHHHHHHHHHHHCCCEEEecCEEEecCCcCCCCCHHHhhC-Ceec
Confidence 9999999999999999999887 789999999999999999999999999999999999999999999999975 7899
Q ss_pred CCCCCceEeeccccccchhHhHHHHHHHHhcCCCcccChHHHHHHHHHHh
Q 046127 233 IHLKPCVARKEDNYFFALSKYQKLLEDTLTENPDFVQPSFRLNEVQGWIK 282 (345)
Q Consensus 233 ~~~~pve~r~~~~~f~~l~~~~~~L~e~l~~~~~~~~P~~~~~~~~~wl~ 282 (345)
+|+.+++.++++||||+|++|+++|.++++..+. ||+.++.+.++||.
T Consensus 177 ~~~~~~~~~~~~~~f~~i~~~~~~L~~~l~~~~~--w~~~v~~~~~~wig 224 (805)
T PRK00390 177 RCGAPVEKKELRQWFLKITDYADELLDDLDKLED--WPEKVKTMQRNWIG 224 (805)
T ss_pred ccCCeeEEEecceeeEecchhHHHHHHHHHhhcc--CcHHHHHHHHhhcc
Confidence 9999999999999999999999999999998753 79999999999987
No 38
>COG0495 LeuS Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.5e-41 Score=354.66 Aligned_cols=206 Identities=18% Similarity=0.271 Sum_probs=190.8
Q ss_pred cccCCCCCCCCC-CC-CCEEEEccCCCCCCcCchhHHHHHHHHHHHHHHHHHcCCeEEEEcCCCCcChHHHHHHHhCCCC
Q 046127 75 SYATNTDKSGTE-PA-DPFVLTTPLYYVNAPPHMGSAYTTIAADAIARFQRLLGKKVIFITGTDEHGEKIAAAAADGGSS 152 (345)
Q Consensus 75 ~~~~~~~~~~~~-~~-~~~~I~~~~PypnG~LHIGHar~~i~~DvlaR~lr~~G~~V~~v~G~D~~G~~I~~~A~~~g~~ 152 (345)
|.....|...+. +. ++|+|+.+.|||||.||+||.|+|+++|+++||+||+||+|++.+|||.+|+|++..|.+.+.+
T Consensus 18 W~e~~~Fe~~~d~~~~~Kfyvl~mfPYpSG~LHvGH~r~Yti~Dv~aRykRm~GyNVL~PMGwdafGlPae~~A~~~~~~ 97 (814)
T COG0495 18 WEEAKVFEADEDSDKPEKFYVLVMFPYPSGALHVGHVRNYTIGDVIARYKRMQGYNVLHPMGWDAFGLPAENAAIKIGTD 97 (814)
T ss_pred HHhcCCcccCCCCCCCCceEEEeCCCCCCCCcccCccccccHHHHHHHHHHhcCCeecccCcccccCchHHHHHHHhCCC
Confidence 444555543222 22 6999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhcCcccC--ccccCCChhhHHHHHHHHHHHHhCCCeeecccCcccccCCCCccchhhhhcCCc
Q 046127 153 PSEHCDVVSQAYKTLWKDLDIAYD--KFIRTTEPKHEAIVKEFYSSVLANGDIYKADYEGLYCVNCEEYKDEKELLENQC 230 (345)
Q Consensus 153 p~~~~~~~~~~~~~~l~~lgI~~D--~f~~T~~~~~~~~v~~~~~~L~~kG~iy~~~~~~~yc~~c~~~l~d~el~~~~~ 230 (345)
|..+++.+++.++++|++||.++| +.+.|+|+.|+.++|++|.+|+++|++|+++.++.|||.|++.|+++|+++ ++
T Consensus 98 P~~wt~~ni~~~k~qlk~lG~siDW~Ref~T~Dp~Yyk~~QW~F~kL~ekGL~y~~~~~VnwcP~d~tvlaneqv~~-g~ 176 (814)
T COG0495 98 PAKWTYYNIAYMKKQLKSLGFSIDWRREFATCDPEYYKWIQWQFLKLYEKGLAYRKEAPVNWCPVDGTVLANEQVID-GG 176 (814)
T ss_pred hHHHHHHHHHHHHHHHHHhCCccccccceecCCccHHHHHHHHHHHHHHCCCEEeccccceeCCCcCCccccceeec-CC
Confidence 999999999999999999999988 667799999999999999999999999999999999999999999999996 78
Q ss_pred CCCCCCCceEeeccccccchhHhHHHHHHHHhcCCCcccChHHHHHHHHHHh
Q 046127 231 CPIHLKPCVARKEDNYFFALSKYQKLLEDTLTENPDFVQPSFRLNEVQGWIK 282 (345)
Q Consensus 231 c~~~~~pve~r~~~~~f~~l~~~~~~L~e~l~~~~~~~~P~~~~~~~~~wl~ 282 (345)
|++||.+|+.++.+||||++++|++.|++-+.... ..||+.++.+.++||.
T Consensus 177 ~~r~~~~V~~kel~qw~~kit~yae~ll~~l~~l~-~~wPE~Vk~mq~nWIg 227 (814)
T COG0495 177 CWRCGEPVEIKELTQWFFKITDYADELLDDLDKLA-TLWPETVKGMQRNWIG 227 (814)
T ss_pred cccCCCceeEeeeEEEEEEechhHHHHHhhhhhhc-cCCchhHHHHHHcCcC
Confidence 99999999999999999999999999999988764 3599999999999997
No 39
>PLN02959 aminoacyl-tRNA ligase
Probab=100.00 E-value=2e-37 Score=337.58 Aligned_cols=137 Identities=23% Similarity=0.296 Sum_probs=119.4
Q ss_pred CCCCEEEEccCCCCCCcCchhHHHHHHHHHHHHHHHHHcCCeEEEEcCCCCcChHHHHHHHhC-------CCC-------
Q 046127 87 PADPFVLTTPLYYVNAPPHMGSAYTTIAADAIARFQRLLGKKVIFITGTDEHGEKIAAAAADG-------GSS------- 152 (345)
Q Consensus 87 ~~~~~~I~~~~PypnG~LHIGHar~~i~~DvlaR~lr~~G~~V~~v~G~D~~G~~I~~~A~~~-------g~~------- 152 (345)
+.++|+|+.||||+||.|||||+++++++|+++||+||+|++|+|++|||+||+||+..|++. |..
T Consensus 43 ~~~kf~i~~ppPY~NG~lHiGHa~t~t~~D~i~Rykrm~G~~vlfp~G~d~tGlPIe~~aek~~~ei~~~g~~~~~~~~~ 122 (1084)
T PLN02959 43 PGEKFFGNFPYPYMNGLLHLGHAFSLSKLEFAAAYHRLRGANVLLPFAFHCTGMPIKASADKLAREIQQYGNPPVFPEED 122 (1084)
T ss_pred CCCcEEEeCCCCCCCCCcchhhHHHHHHHHHHHHHHHcCCCccCCCCCcCCCCccHHHHHHHHHHHHHHcCCCccccccc
Confidence 348899999999999999999999999999999999999999999999999999999998652 211
Q ss_pred ------------------------------------------------------------HHHHHHHHHHHHHHHHhhcC
Q 046127 153 ------------------------------------------------------------PSEHCDVVSQAYKTLWKDLD 172 (345)
Q Consensus 153 ------------------------------------------------------------p~~~~~~~~~~~~~~l~~lg 172 (345)
|..+++.+...++++|++||
T Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~f~~~~~k~~~k~~~~~~~~~~~~~~~~~~~~i~~f~dp~~~~~yF~~~~~~~~k~lG 202 (1084)
T PLN02959 123 EDEAAAVAAAKAEAEAAAAPPDKFKGKKSKAVAKSGTQKYQWEIMRSFGLPDSEIAKFQDPYHWLSYFPPLAKEDLKAFG 202 (1084)
T ss_pred ccccccccccccccccccccHHHHHHHHHHHHHHhCCchHHHHHHhhcCCchhhhhhccCHHHHHHhccHHHHHHHHHhC
Confidence 12234444477899999999
Q ss_pred cccC--ccccCCC--hhhHHHHHHHHHHHHhCCCeeecccCcccccCCCCccchh
Q 046127 173 IAYD--KFIRTTE--PKHEAIVKEFYSSVLANGDIYKADYEGLYCVNCEEYKDEK 223 (345)
Q Consensus 173 I~~D--~f~~T~~--~~~~~~v~~~~~~L~~kG~iy~~~~~~~yc~~c~~~l~d~ 223 (345)
++.| +-+.|+| +.|...+++.|.+|+++|+||++.+++.|||.|++.++|+
T Consensus 203 ~~iDW~r~f~T~d~np~y~~~v~wqf~~L~ekG~I~~g~rpv~wcp~~~t~ladh 257 (1084)
T PLN02959 203 LGCDWRRSFITTDVNPYYDAFVRWQFRKLKKKGKIVKDKRYTIYSPLDGQPCADH 257 (1084)
T ss_pred ceEeCCCCcCCCCCChhHHHHHHHHHHHHHHCCCEEecCeeeeeCCCCCCCchhh
Confidence 8876 6677887 8999999999999999999999999999999999887663
No 40
>KOG0435 consensus Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=4.1e-38 Score=314.74 Aligned_cols=196 Identities=22% Similarity=0.284 Sum_probs=187.3
Q ss_pred CCCCCCCEEEEccCCCCCCcCchhHHHHHHHHHHHHHHHHHcCCeEEEEcCCCCcChHHHHHHHhCCCCHHHHHHHHHHH
Q 046127 84 GTEPADPFVLTTPLYYVNAPPHMGSAYTTIAADAIARFQRLLGKKVIFITGTDEHGEKIAAAAADGGSSPSEHCDVVSQA 163 (345)
Q Consensus 84 ~~~~~~~~~I~~~~PypnG~LHIGHar~~i~~DvlaR~lr~~G~~V~~v~G~D~~G~~I~~~A~~~g~~p~~~~~~~~~~ 163 (345)
...++++ ||....|||+|.|||||.|-|+++|+++||+||+||+|++..|||.+|+|.+.+|.+.|+.|+.+...+++.
T Consensus 53 ~d~sk~K-YiLsMFPYPSG~LHiGHvRVYTIsD~laRf~rm~GynVihPMGWDaFGLPAENAAiergv~P~sWT~~NI~~ 131 (876)
T KOG0435|consen 53 SDKSKKK-YILSMFPYPSGALHIGHVRVYTISDILARFYRMKGYNVIHPMGWDAFGLPAENAAIERGVHPASWTINNIAK 131 (876)
T ss_pred cccCCCc-eEEEecCCCCCcccccceEEEEehHHHHHHHHhcCceeecCCcccccCCchhhHHHhcCCCchhhhHHHHHH
Confidence 3455666 888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhcCcccC--ccccCCChhhHHHHHHHHHHHHhCCCeeecccCcccccCCCCccchhhhhcCCcCCCCCCCceEe
Q 046127 164 YKTLWKDLDIAYD--KFIRTTEPKHEAIVKEFYSSVLANGDIYKADYEGLYCVNCEEYKDEKELLENQCCPIHLKPCVAR 241 (345)
Q Consensus 164 ~~~~l~~lgI~~D--~f~~T~~~~~~~~v~~~~~~L~~kG~iy~~~~~~~yc~~c~~~l~d~el~~~~~c~~~~~pve~r 241 (345)
|+++|++||+.|| +.+.|++|.|+.+.|++|.+|+++|++|+++..+.|||-+.|+|++.++-.+||+|++|.+||.+
T Consensus 132 Mk~Ql~~lg~~FDWdrEiSTC~PdYYKWTQwiFlkLfe~GLAYq~Ea~VNWDPvD~TVLAnEQVD~~G~SWRSGA~VEkK 211 (876)
T KOG0435|consen 132 MKQQLKSLGISFDWDREISTCEPDYYKWTQWIFLKLFEKGLAYQAEAEVNWDPVDKTVLANEQVDADGCSWRSGAKVEKK 211 (876)
T ss_pred HHHHHHHcCcccccccccccCCcchhHHHHHHHHHHHHhhhhhccccccccCcccceeecchhhcccCccccccchhhHH
Confidence 9999999999986 88899999999999999999999999999999999999999999999998889999999999999
Q ss_pred eccccccchhHhHHHHHHHHhcCCCcccChHHHHHHHHHHhc
Q 046127 242 KEDNYFFALSKYQKLLEDTLTENPDFVQPSFRLNEVQGWIKS 283 (345)
Q Consensus 242 ~~~~~f~~l~~~~~~L~e~l~~~~~~~~P~~~~~~~~~wl~~ 283 (345)
..+|||+++++|+++|.+.|+..++ ||+ ++++.+|||.+
T Consensus 212 ~LrQWfikttaYAk~L~d~L~~L~~--W~~-vk~mQrnWIG~ 250 (876)
T KOG0435|consen 212 KLRQWFIKTTAYAKRLLDGLETLPE--WPE-VKDMQRNWIGR 250 (876)
T ss_pred HHHHHHhhhhHHHHHHHHHHHhhhh--hhh-HHHHHHhhccc
Confidence 9999999999999999999998865 798 79999999974
No 41
>PRK12300 leuS leucyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=2.8e-35 Score=316.77 Aligned_cols=216 Identities=23% Similarity=0.317 Sum_probs=188.8
Q ss_pred CchhHHHHHHHHHHHHHHHHHcCCeEEEEcCCCCcChHHHHHHHhC---------------CC---------CHHHHHHH
Q 046127 104 PHMGSAYTTIAADAIARFQRLLGKKVIFITGTDEHGEKIAAAAADG---------------GS---------SPSEHCDV 159 (345)
Q Consensus 104 LHIGHar~~i~~DvlaR~lr~~G~~V~~v~G~D~~G~~I~~~A~~~---------------g~---------~p~~~~~~ 159 (345)
|||||+++++++|+++||+||+|++|.+++|||+||+||+..|++. |+ ++++++++
T Consensus 1 lHiGH~~~~t~~D~i~Ry~rm~G~~Vl~~~G~d~~GlPie~~ae~~~~~~~~~~~~~~~~~gi~~~~i~~f~~~~~~~~~ 80 (897)
T PRK12300 1 LHVGHGRTYTIGDVIARYKRMRGYNVLFPMAFHVTGTPILGIAERIARGDPETIELYKSLYGIPEEELEKFKDPEYIVEY 80 (897)
T ss_pred CccchhHHHHHHHHHHHHHHcCCCcCCCCCCCCCCCcCHHHHHHHhhccchhHHHHHHHHcCCCHHHHHHhcCHHHHHHH
Confidence 7999999999999999999999999999999999999999988642 33 46788999
Q ss_pred HHHHHHHHHhhcCcccC--ccccCCChhhHHHHHHHHHHHHhCCCeeecccCcccccCCCCccchhhh------------
Q 046127 160 VSQAYKTLWKDLDIAYD--KFIRTTEPKHEAIVKEFYSSVLANGDIYKADYEGLYCVNCEEYKDEKEL------------ 225 (345)
Q Consensus 160 ~~~~~~~~l~~lgI~~D--~f~~T~~~~~~~~v~~~~~~L~~kG~iy~~~~~~~yc~~c~~~l~d~el------------ 225 (345)
+.+.+++++++||+++| +-+.|+++.|.+.++++|.+|+++|+||++.+++.|||.|++.|+++|+
T Consensus 81 ~~~~~~~~~~~lG~~~DW~r~y~T~dp~y~~~v~w~F~~L~ekGliyrg~~~v~wcp~~~t~lad~e~~~~e~~~~~~~~ 160 (897)
T PRK12300 81 FSEEAKEDMKRIGYSIDWRREFTTTDPEYSKFIEWQFRKLKEKGLIVKGSHPVRYCPNDNNPVGDHDLLDGEEPEIVEYT 160 (897)
T ss_pred hHHHHHHHHHHhCcEEeCCCCeECCChhHHHHHHHHHHHHHHCCCEecCCEeeeeCCCCCCCchHHHHhcCCCCCcceEE
Confidence 99999999999999876 6677999999999999999999999999999999999999999976310
Q ss_pred --------------------------------------------------------------------------------
Q 046127 226 -------------------------------------------------------------------------------- 225 (345)
Q Consensus 226 -------------------------------------------------------------------------------- 225 (345)
T Consensus 161 ~ikf~~~~~~~l~~~TtrPeTl~g~tai~V~P~~~Y~~~~~~~e~~i~a~~~~~~~~~~~~~~~~~~~~~G~~l~G~~~~ 240 (897)
T PRK12300 161 LIKFEESEDLILPAATLRPETIFGVTNLWVNPDATYVKAEVDGEKWIVSKEAAEKLSFQDRDVEIIEEIKGSELIGKKVK 240 (897)
T ss_pred EEEEeCCCceEEEEEECCcchhccceEEEECCCCcEEEEEECCEEEEEeHHHHHHHhcCcCCceEEEEeehHHhcCCEEE
Confidence
Q ss_pred ------------------------------------------h-------------------------------------
Q 046127 226 ------------------------------------------L------------------------------------- 226 (345)
Q Consensus 226 ------------------------------------------~------------------------------------- 226 (345)
.
T Consensus 241 ~Pl~~~~ipil~~~~V~~~~GTGvV~~~Pah~~~Dy~~~~~~~~~~~~~~~l~~i~ii~v~~~g~~~a~~~~~~~~~~~~ 320 (897)
T PRK12300 241 NPVTGKEVPILPADFVDPDNGTGVVMSVPAHAPYDYVALRDLKKNKELLDVIEPIPLIEVEGYGEFPAKEVVEKLGIKSQ 320 (897)
T ss_pred CCCCCCeEEEeccCeeecCCCeeeEEeCCCCCHHHHHHHHHhccccccccccCCcceEecCCcCcccHHHHHHHhCCCCc
Confidence 0
Q ss_pred ------------------c----------------------------------------CCcCCCCCCCceEee-ccccc
Q 046127 227 ------------------E----------------------------------------NQCCPIHLKPCVARK-EDNYF 247 (345)
Q Consensus 227 ------------------~----------------------------------------~~~c~~~~~pve~r~-~~~~f 247 (345)
+ .+.|.|||+|++.+. ++|||
T Consensus 321 ~d~~l~~a~~~~y~~~f~~G~~~~~~g~~~G~~v~eA~~~I~~~L~~~g~~~~~~~~~~~~~~~R~~~~~i~~~~~~QWF 400 (897)
T PRK12300 321 EDPELEEATKEVYRAEFHKGVLKENTGEYAGKPVREAREKITKDLIEKGIADIMYEFSNRPVYCRCGTECVVKVVKDQWF 400 (897)
T ss_pred cchhHHHHHHHhhhccccceEEeecccCcCCeEHHHHHHHHHHHHHHCCCeEEEEecCCCCcCcCCCCEEEEEecCCceE
Confidence 0 012447888888876 49999
Q ss_pred cchh--HhHHHHHHHHhcCCCcccChHHHHHHHHHHhcCCCCcccccCCCCCCcccCCC--------CCCcEEEecCchh
Q 046127 248 FALS--KYQKLLEDTLTENPDFVQPSFRLNEVQGWIKSGLRDFSISRASVDWGIPVPND--------NKQTIYVWFDALL 317 (345)
Q Consensus 248 ~~l~--~~~~~L~e~l~~~~~~~~P~~~~~~~~~wl~~gL~D~~ISR~~~~WGIpvP~~--------~~~~iyVWfdal~ 317 (345)
++++ .+++++.+.+++. .+.|+..++.+.+||+ +|+||||||| .+||+|||.+ .+.++|+|+++.+
T Consensus 401 i~~~~~~~k~~~~~~~~~~--~~~P~~~~~~~~~~l~-~l~DW~ISRq-r~WGtpiP~~~~w~~esl~ds~iY~~~~~i~ 476 (897)
T PRK12300 401 IDYSDPEWKELAHKALDNM--EIIPEEYRKEFENTID-WLKDRACARR-RGLGTRLPWDEEWIIESLSDSTIYMAYYTIA 476 (897)
T ss_pred EEcCcHHHHHHHHHHHccC--EEECHHHHHHHHHHHh-hhhhcceeec-cccCCcCCccCCEEeeeccccchhhhHHHHH
Confidence 9997 7999999999876 4789999999999997 5999999998 5999999953 2568999999999
Q ss_pred HHHHhc
Q 046127 318 GYISAL 323 (345)
Q Consensus 318 gYls~~ 323 (345)
.|+...
T Consensus 477 ~~l~~~ 482 (897)
T PRK12300 477 HKIREY 482 (897)
T ss_pred HHHHHc
Confidence 998863
No 42
>KOG0432 consensus Valyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2e-34 Score=295.32 Aligned_cols=254 Identities=23% Similarity=0.364 Sum_probs=222.8
Q ss_pred CCCCCCEEEEccCCCCCCcCchhHHHHHHHHHHHHHHHHHcCCeEEEEcCCCCcChHHHHHHHh----CC-C-----CHH
Q 046127 85 TEPADPFVLTTPLYYVNAPPHMGSAYTTIAADAIARFQRLLGKKVIFITGTDEHGEKIAAAAAD----GG-S-----SPS 154 (345)
Q Consensus 85 ~~~~~~~~I~~~~PypnG~LHIGHar~~i~~DvlaR~lr~~G~~V~~v~G~D~~G~~I~~~A~~----~g-~-----~p~ 154 (345)
+.++..|.++-||||++|.||||||.+..+-|+++||.||.|+.|.++.|+|+.|...+...++ .+ + ..+
T Consensus 71 ~~~~~~f~i~~PPPNVTG~LHiGHALt~aiqD~i~R~~rm~G~~vlw~PG~DHAGIATQ~VVEK~l~~~~~~~Rh~lgRe 150 (995)
T KOG0432|consen 71 PNPGGVFVIPLPPPNVTGSLHIGHALTVAIQDALARYNRMHGYQVLWVPGTDHAGIATQVVVEKQLAREGGKTRHDLGRE 150 (995)
T ss_pred CCCCCcceeecCCCCcccccchhHHHHHHHHHHHHHHHHhcCCeeeecCCccccchhHHHHHHHHHHHhcCcchhhcCHH
Confidence 5578999999999999999999999999999999999999999999999999999988777765 22 2 222
Q ss_pred -------HHHHHHHHHHHHHHhhcCcccC--ccccCCChhhHHHHHHHHHHHHhCCCeeecccCcccccCCCCccchhhh
Q 046127 155 -------EHCDVVSQAYKTLWKDLDIAYD--KFIRTTEPKHEAIVKEFYSSVLANGDIYKADYEGLYCVNCEEYKDEKEL 225 (345)
Q Consensus 155 -------~~~~~~~~~~~~~l~~lgI~~D--~f~~T~~~~~~~~v~~~~~~L~~kG~iy~~~~~~~yc~~c~~~l~d~el 225 (345)
+|-+++...|.++|++||.++| +...|+|+.....|.+.|.+|++.|+||+..+-+.||+.-.+.++|-|+
T Consensus 151 ~F~~~vw~Wk~e~g~~I~~Qlk~lGas~DW~re~fTmD~~~s~AV~eAFvrL~eeglIyR~~rlVNW~~~L~saiSdiEV 230 (995)
T KOG0432|consen 151 EFLKEVWEWKEEYGGRIYNQLKRLGASLDWDREAFTMDPKLSRAVTEAFVRLHEEGLIYRANRLVNWCPALRSAISDIEV 230 (995)
T ss_pred HHHHHHHHHHHHhCccHHHHHHHhcCcccccHhhcccCHHHHHHHHHHHHHHHhcCceEecCceeeechhHHhhhhhhee
Confidence 4567778899999999999887 5566999999999999999999999999999999999999998877320
Q ss_pred h-------------------------------------------------------------------------------
Q 046127 226 L------------------------------------------------------------------------------- 226 (345)
Q Consensus 226 ~------------------------------------------------------------------------------- 226 (345)
.
T Consensus 231 e~~ei~~~t~l~vpGyd~~VeFG~L~~faY~v~gs~~~i~VaTTRpET~lGDvAvAVhP~D~RYk~lhGk~~~hP~~~r~ 310 (995)
T KOG0432|consen 231 ESVEIPGRTLLSVPGYDTKVEFGVLYSFAYPVEGSDEEIVVATTRPETILGDVAVAVHPDDDRYKHLHGKFVKHPFTGRK 310 (995)
T ss_pred cceecCCCceEecCCCCcceeeeeeeEEEEeccCCCCeEEEecCCccccccceeEEeCCCCcccccccCceeecCCCCCc
Confidence 0
Q ss_pred --------------------------------------------------------------------------------
Q 046127 227 -------------------------------------------------------------------------------- 226 (345)
Q Consensus 227 -------------------------------------------------------------------------------- 226 (345)
T Consensus 311 lPiI~D~~Vd~~fGTGaVKITPaHd~nDyEvgkRh~L~~~ni~~~dG~l~~~~gef~Gm~RFeAR~kvv~~L~e~gL~~g 390 (995)
T KOG0432|consen 311 LPIICDIAVDMEFGTGAVKITPAHDPNDYEVGKRHNLEFINIFTDDGLLNNVCGEFKGMKRFEAREKVVEKLKELGLYVG 390 (995)
T ss_pred cceeecccccccccccceEecCCCChhHHHHHHhcCCCceeEEcCCCceeccchhccCcHHHHHHHHHHHHHHHhhhhhc
Confidence
Q ss_pred --c----CCcCCCCCCCceEeeccccccchhHhHHHHHHHHhcCCCcccChHHHHHHHHHHhcCCCCcccccCCCCCCcc
Q 046127 227 --E----NQCCPIHLKPCVARKEDNYFFALSKYQKLLEDTLTENPDFVQPSFRLNEVQGWIKSGLRDFSISRASVDWGIP 300 (345)
Q Consensus 227 --~----~~~c~~~~~pve~r~~~~~f~~l~~~~~~L~e~l~~~~~~~~P~~~~~~~~~wl~~gL~D~~ISR~~~~WGIp 300 (345)
+ -+.|.++|.-+|.+-.+|||++++...++..+.++++...+.|+...++-.+|+. +.+||||||| ++||+.
T Consensus 391 ~~~h~mvlpiCSRsgDVIEpllkpQW~v~c~ema~~A~~av~sG~L~i~P~~~~k~w~~W~~-~i~DWCiSRQ-LWWGHr 468 (995)
T KOG0432|consen 391 KENHPMVLPICSRSGDVIEPLLKPQWFVSCKEMAKKALKAVESGKLEILPEFHEKEWYRWLE-NIRDWCISRQ-LWWGHR 468 (995)
T ss_pred cCCCceeccccCCCCCcccccccchheeehHHHHHHHHHHHhcCCeEECchHHHHHHHHHHh-hccccchhhh-hhhccc
Confidence 0 2569999999999999999999999999999999988777899999999999997 5999999999 999999
Q ss_pred cCC----------C-------------------------------CCCcEEEecCchhHHHHhcCCCCCCCchhhhhhCc
Q 046127 301 VPN----------D-------------------------------NKQTIYVWFDALLGYISALSEDRDQPSLRTAVSSG 339 (345)
Q Consensus 301 vP~----------~-------------------------------~~~~iyVWfdal~gYls~~~~~~~~~~~~~~~~~~ 339 (345)
||. + +..|+++||.+.+-.+|++|++.+. +++..|
T Consensus 469 IPAy~v~~~~~~~ee~~WvvarseeeA~ekaa~k~g~~~~~~L~qDpDVLDTWFSS~L~PfS~lGWP~~t----~d~~~f 544 (995)
T KOG0432|consen 469 IPAYFVNLSDGRAEEDYWVVARSEEEAREKAAEKFGPGKEFTLEQDPDVLDTWFSSGLWPFSTLGWPEET----KDFKNF 544 (995)
T ss_pred cceeeeecccCCCccceeEEeCCHHHHHHHHHHHhCCcccceeecCccHHHhhhhcccccchhcCCcccc----ccHHhc
Confidence 994 1 2579999999999999999999865 678888
Q ss_pred CCCCC
Q 046127 340 WPASL 344 (345)
Q Consensus 340 w~~~~ 344 (345)
+|-++
T Consensus 545 yP~sl 549 (995)
T KOG0432|consen 545 YPLSL 549 (995)
T ss_pred CCchh
Confidence 88764
No 43
>KOG0434 consensus Isoleucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=99.97 E-value=2.3e-31 Score=266.47 Aligned_cols=263 Identities=18% Similarity=0.250 Sum_probs=221.8
Q ss_pred cccCCCCC---CCCCCCCCEEEEccCCCCCCcCchhHHHHHHHHHHHHHHHHHcCCeEEEEcCCCCcChHHHHHHHh-CC
Q 046127 75 SYATNTDK---SGTEPADPFVLTTPLYYVNAPPHMGSAYTTIAADAIARFQRLLGKKVIFITGTDEHGEKIAAAAAD-GG 150 (345)
Q Consensus 75 ~~~~~~~~---~~~~~~~~~~I~~~~PypnG~LHIGHar~~i~~DvlaR~lr~~G~~V~~v~G~D~~G~~I~~~A~~-~g 150 (345)
|...+.|. +.+.++++|.+.++||.++|-+|-||+...++.|+..||.-+.||.|..-+|||+||+|++..-.+ .|
T Consensus 21 W~e~~aF~~slk~sk~rp~ftFyDGPPFATGlPHyGHiLa~TIKDiVtRya~~~G~hVeRRFGWD~HGlPVE~eIDKkLg 100 (1070)
T KOG0434|consen 21 WREIDAFHTSLKLSKGRPKFTFYDGPPFATGLPHYGHILASTIKDIVTRYATQTGHHVERRFGWDTHGLPVEYEIDKKLG 100 (1070)
T ss_pred HHHhhHHHHHHHhhCCCCceeeccCCccccCCCccchhhhhhHHHHHHHHhhccccceeeecccccCCCccceeechhcC
Confidence 55555552 245678999999999999999999999999999999999999999999999999999999876553 34
Q ss_pred CC----------------HHHHHHHHHHHHHHHHhhcC--cccCccccCCChhhHHHHHHHHHHHHhCCCeeecccCccc
Q 046127 151 SS----------------PSEHCDVVSQAYKTLWKDLD--IAYDKFIRTTEPKHEAIVKEFYSSVLANGDIYKADYEGLY 212 (345)
Q Consensus 151 ~~----------------p~~~~~~~~~~~~~~l~~lg--I~~D~f~~T~~~~~~~~v~~~~~~L~~kG~iy~~~~~~~y 212 (345)
++ .+.++.+++.+.+++..+|| |+||+-|+|+++.+.+.|+++|++|.++|++|++-..+.|
T Consensus 101 I~g~~dV~kmGI~kYN~ECR~IVmrYssEWe~tv~RlGRWidF~ndYkTmyp~FMESvWwvFkeL~~kglVYRG~kVMP~ 180 (1070)
T KOG0434|consen 101 ITGRDDVMKMGIDKYNNECRKIVMRYSSEWEKTVERLGRWIDFDNDYKTLYPSFMESVWWVFKELHEKGLVYRGFKVMPY 180 (1070)
T ss_pred CCCHHHHHHHhHHhHhHHHHHHHHHHHHHHHHHHHhhccceeccCCcceecHHHHHHHHHHHHHHHhcCceecceeeecc
Confidence 32 34678899999999999999 7788999999999999999999999999999999999999
Q ss_pred ccCCCCccchhh--------------------------------------------------------------------
Q 046127 213 CVNCEEYKDEKE-------------------------------------------------------------------- 224 (345)
Q Consensus 213 c~~c~~~l~d~e-------------------------------------------------------------------- 224 (345)
+..|.+.|++-|
T Consensus 181 STac~TPLSNFEa~QNYKdV~DPav~v~F~li~~~~~slvAWTTTPWTLPSNlal~Vnp~~~Yvki~dk~~~k~yil~es 260 (1070)
T KOG0434|consen 181 STACTTPLSNFEAQQNYKDVPDPAVFVAFPLIGDPNVSLVAWTTTPWTLPSNLALCVNPDFQYVKIKDKTTGKKYILMES 260 (1070)
T ss_pred ccccCCcccchhcccCcccCCCCeEEEEeeccCCcceeEEEEecCCccCccceeEEEcCCeEEEEEEeccCCeEEEEeHH
Confidence 999999997510
Q ss_pred --------------------------------------------------------------------------------
Q 046127 225 -------------------------------------------------------------------------------- 224 (345)
Q Consensus 225 -------------------------------------------------------------------------------- 224 (345)
T Consensus 261 rl~~l~k~~~~~~~eiler~~G~~L~g~kYeplF~YF~~~~~~~aFrvl~d~yVt~~sGTGiVH~AP~FGe~Dy~~c~~~ 340 (1070)
T KOG0434|consen 261 RLGELYKNPKNDNYEILERFQGAALVGLKYEPLFPYFAETFEEGAFRVLSDDYVTEDSGTGIVHQAPAFGEEDYRACVAN 340 (1070)
T ss_pred HHHHHhcCcccccHHHHHhcccccccCcccCccchHHHHHhccCceEEeccCcEecCCCceeeecCCccChhhHHHHHHc
Confidence
Q ss_pred -------------------------------------h-----------------hcCCcCCCCCCCceEeeccccccch
Q 046127 225 -------------------------------------L-----------------LENQCCPIHLKPCVARKEDNYFFAL 250 (345)
Q Consensus 225 -------------------------------------l-----------------~~~~~c~~~~~pve~r~~~~~f~~l 250 (345)
+ +..+.||++.+|+.+|..++||++.
T Consensus 341 giI~~d~~~~cpVDe~G~~Tsev~dfaG~YVKDaDK~Ii~~lk~~g~lv~~~~i~HsYPFCWRSDTPLiYraVPsWFVrV 420 (1070)
T KOG0434|consen 341 GIIRKDSLPPCPVDESGLFTSEVTDFAGQYVKDADKLIIRSLKASGRLVKASQITHSYPFCWRSDTPLIYRAVPSWFVRV 420 (1070)
T ss_pred CcccCCCCCCCccccCCccccccccccceeeccchHHHHHHHHhcCceeeeeeeeeccCceecCCChHHHhhccHhhhhH
Confidence 0 0157899999999999999999999
Q ss_pred hHhHHHHHHHHhcCCCcccChHH-HHHHHHHHhcCCCCcccccCCCCCCcccCC----C---------------------
Q 046127 251 SKYQKLLEDTLTENPDFVQPSFR-LNEVQGWIKSGLRDFSISRASVDWGIPVPN----D--------------------- 304 (345)
Q Consensus 251 ~~~~~~L~e~l~~~~~~~~P~~~-~~~~~~wl~~gL~D~~ISR~~~~WGIpvP~----~--------------------- 304 (345)
+...++|++...+. .|.|..+ .++..|||++ .+||.|||. ..||.|||- |
T Consensus 421 k~~v~~ll~nn~~t--~WVP~~ikeKRF~NWL~n-ARDW~iSRn-R~WGTPIpLWVSdD~eevVcigSi~eLEeLSG~kI 496 (1070)
T KOG0434|consen 421 KNIVDQLLRNNMKT--HWVPQNIKEKRFANWLKN-ARDWNISRN-RYWGTPIPLWVSDDYEEVVCIGSIKELEELSGVKI 496 (1070)
T ss_pred HHHHHHHHhccccc--ccCChhhhHHHHHHHHhh-hhhcccccc-cccCCCcceEEccCCceEEEeccHHHHHHhcCCcc
Confidence 99999999998877 3556654 5667899985 899999995 799999992 1
Q ss_pred ------------------------CCCcEEEecCchhHHHHhcCCCCCCCchhhhhhCcCCCCC
Q 046127 305 ------------------------NKQTIYVWFDALLGYISALSEDRDQPSLRTAVSSGWPASL 344 (345)
Q Consensus 305 ------------------------~~~~iyVWfdal~gYls~~~~~~~~~~~~~~~~~~w~~~~ 344 (345)
-..|++-|||+..+..+...++-++ .++|.+-.|+++
T Consensus 497 tDlHRe~iD~itIps~~gkg~l~Rv~eVfDCWFESGSMPYAq~HyPFen---k~~fe~~fPadF 557 (1070)
T KOG0434|consen 497 TDLHRESIDHITIPSKKGKGVLHRVSEVFDCWFESGSMPYAQRHYPFEN---KEEFEENFPADF 557 (1070)
T ss_pred hhhhhhhcCceecccCCCCcceehhhhHhhhhhccCCCcchhhcCCccc---hHHHhhcCchHh
Confidence 0457888999998877777776553 377888888763
No 44
>KOG0433 consensus Isoleucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=99.96 E-value=2.3e-29 Score=254.14 Aligned_cols=211 Identities=22% Similarity=0.327 Sum_probs=182.0
Q ss_pred CCCCCCEEEEccCCCCCCcCchhHHHHHHHHHHHHHHHHHcCCeEEEEcCCCCcChHHH-HHHHh------CCCCH----
Q 046127 85 TEPADPFVLTTPLYYVNAPPHMGSAYTTIAADAIARFQRLLGKKVIFITGTDEHGEKIA-AAAAD------GGSSP---- 153 (345)
Q Consensus 85 ~~~~~~~~I~~~~PypnG~LHIGHar~~i~~DvlaR~lr~~G~~V~~v~G~D~~G~~I~-~~A~~------~g~~p---- 153 (345)
..++..|++.+ +||.|||||+++.|..|++.|++.+.|.++.++.|+|+||+||+ .+|-+ ..++|
T Consensus 55 ~~q~~~f~L~d----anG~lhlghalnkILkdIinr~~laqg~~alyvpGwDchGLPiEs~kalssl~~~~~~~s~leiR 130 (937)
T KOG0433|consen 55 DQQRVEFELKD----ANGNLHLGHALNKILKDIINRILLAQGKSALYVPGWDCHGLPIESTKALSSLTESEGSRTPLEIR 130 (937)
T ss_pred hccCceEEEec----cCCCccchHHHHHHHHHHHHHHHHhcCceeccCCCCCcCCCchHHHHHhhhhhhccccCCcHHHH
Confidence 34567788777 89999999999999999999999999999999999999999999 45543 22344
Q ss_pred ---HHHHHHHHHHHHHHHhhcCcccC--ccccCCChhhHHHHHHHHHHHHhCCCeeecccCcccccCCCCccchhhhh--
Q 046127 154 ---SEHCDVVSQAYKTLWKDLDIAYD--KFIRTTEPKHEAIVKEFYSSVLANGDIYKADYEGLYCVNCEEYKDEKELL-- 226 (345)
Q Consensus 154 ---~~~~~~~~~~~~~~l~~lgI~~D--~f~~T~~~~~~~~v~~~~~~L~~kG~iy~~~~~~~yc~~c~~~l~d~el~-- 226 (345)
+.++++-++.+++.+.++||.-| +-|-|.++.|+....++|.+|+++|+|||...+++|+|+..+.|++.|++
T Consensus 131 ~~Ar~fA~~AIk~Q~e~F~r~gv~aDW~n~Y~T~~~~ye~aQL~iF~~lyekgLvyR~~KPVyWSpSSRTALAEaELEYn 210 (937)
T KOG0433|consen 131 AKARIFADEAIKKQMEAFRRWGVTADWENPYVTKSPSYEAAQLDIFAKLYEKGLVYRSFKPVYWSPSSRTALAESELEYN 210 (937)
T ss_pred HHHHHHHHHHHHHHHHHHHHheeeccCCCceeecChHHHHHHHHHHHHHHhccceeccCCcceecCcchhhhhhhhccCC
Confidence 35778889999999999999766 67779999999999999999999999999999999999999999764210
Q ss_pred --------------------------------------------------------------------------------
Q 046127 227 -------------------------------------------------------------------------------- 226 (345)
Q Consensus 227 -------------------------------------------------------------------------------- 226 (345)
T Consensus 211 ~nH~S~S~Y~~F~L~~~S~~~~~~~~~~~~iyaLVWTTTPWTlPsN~Ai~~n~~~~Yslv~~~~~~~~~~ylvas~L~~~ 290 (937)
T KOG0433|consen 211 DNHQSTSAYFRFKLINFSSSAHSEDSKIPQIYALVWTTTPWTLPSNNAISVNSAIQYSLVQFDNNPTSTFYLVASKLLEE 290 (937)
T ss_pred cCCcceeEEEEEeccCCccccccCCCccCcEEEEEEeCCCccccccceeeeccccceEEEEeccCCcceEEEEccchhhh
Confidence
Q ss_pred --------------------------------------------------------------------------------
Q 046127 227 -------------------------------------------------------------------------------- 226 (345)
Q Consensus 227 -------------------------------------------------------------------------------- 226 (345)
T Consensus 291 fe~~~~~k~~i~~t~~g~~L~~~~Y~~pl~~~~~~P~l~g~hVT~~~GTGLVHTAP~HG~eDYlv~l~~~l~~~s~VD~~ 370 (937)
T KOG0433|consen 291 FEKSSDRKCKIVGTVKGANLIGRRYKHPLHNELGLPILEGPHVTDTVGTGLVHTAPAHGFEDYLVAISKGLRVESFVDSR 370 (937)
T ss_pred hhhhcCcceeeeeecchhhccCceecCcCccccCCccccccceecCcccceeecCCCCChHHHHHHhhcCCCcccccCCC
Confidence
Q ss_pred ----------------------------------------cCCcCCCCCCCceEeeccccccchhHhHHHHHHHHhcCCC
Q 046127 227 ----------------------------------------ENQCCPIHLKPCVARKEDNYFFALSKYQKLLEDTLTENPD 266 (345)
Q Consensus 227 ----------------------------------------~~~~c~~~~~pve~r~~~~~f~~l~~~~~~L~e~l~~~~~ 266 (345)
.+++-|+..+|+.+|.++|||.++++++....+.+++..
T Consensus 371 G~yT~ea~~~l~Gk~VL~eG~k~vl~~l~~~iv~~sky~HsYPYDWRTKKPvIiRAseQWFi~~e~~k~~A~~al~~Vk- 449 (937)
T KOG0433|consen 371 GCYTREAGHDLDGKEVLGEGQKIVLRLLNHDIVHVSKYVHSYPYDWRTKKPVIIRASEQWFIDVEEIKKRASMALDDVK- 449 (937)
T ss_pred CceecccccccccchhhccccHhHHHHHhhhhhhhhcccccCCcccccCCceEEecchhheeeHHhhhhHHHHHHhhce-
Confidence 134566777899999999999999999999999999873
Q ss_pred cccChHHHHHHHHHHhcCCCCcccccCCCCCCcccCC
Q 046127 267 FVQPSFRLNEVQGWIKSGLRDFSISRASVDWGIPVPN 303 (345)
Q Consensus 267 ~~~P~~~~~~~~~wl~~gL~D~~ISR~~~~WGIpvP~ 303 (345)
+.|....+.+..++. +.++|||||| .-||+|||.
T Consensus 450 -~~P~~~~~rl~~~~~-~R~~WCISRQ-R~WGvPIP~ 483 (937)
T KOG0433|consen 450 -VAPGDSDLRLKQLVT-TRPSWCISRQ-RVWGVPIPA 483 (937)
T ss_pred -eCCcchHHHHHHHHc-CCCcceeeec-cccCCccee
Confidence 577777888889996 5799999999 499999993
No 45
>PTZ00399 cysteinyl-tRNA-synthetase; Provisional
Probab=99.94 E-value=4.4e-26 Score=237.20 Aligned_cols=191 Identities=19% Similarity=0.277 Sum_probs=158.6
Q ss_pred CCCCCCCCCCCCEEEEccCCCCCCcCchhHHHHHHHHHHHHHHHH-HcCCeEEEEcCCCCcChHHHHHHHhCCCC-HHHH
Q 046127 79 NTDKSGTEPADPFVLTTPLYYVNAPPHMGSAYTTIAADAIARFQR-LLGKKVIFITGTDEHGEKIAAAAADGGSS-PSEH 156 (345)
Q Consensus 79 ~~~~~~~~~~~~~~I~~~~PypnG~LHIGHar~~i~~DvlaR~lr-~~G~~V~~v~G~D~~G~~I~~~A~~~g~~-p~~~ 156 (345)
..|.+..++.-++|+|+|.+| +.+||||+|++|.+|+++||++ +.||+|.|++|+||||++|+.+|++.|++ +.++
T Consensus 51 ~~f~p~~~~~v~~Y~CGPTvY--d~~HiGhart~v~~Dil~R~l~~~~Gy~V~~v~nitDidDKIi~~A~~~g~~~~~el 128 (651)
T PTZ00399 51 VEFVPQNGRQVRWYTCGPTVY--DSSHLGHARTYVTFDIIRRILEDYFGYDVFYVMNITDIDDKIIKRAREEKLSIFLEL 128 (651)
T ss_pred cccccCCCCeeEEEEeCCCcc--CCcccccchHHHHHHHHHHHHHHhcCCceEEEeCCCCcchHHHHHHHHhCCCcHHHH
Confidence 344433455677888888777 9999999999999999999999 99999999999999999999999999999 9999
Q ss_pred HHHHHHHHHHHHhhcCcccCccccCCChhhHHHHHHHHHHHHhCCCeeecccCcccccCCCCccchhhhhcCCcCCCCCC
Q 046127 157 CDVVSQAYKTLWKDLDIAYDKFIRTTEPKHEAIVKEFYSSVLANGDIYKADYEGLYCVNCEEYKDEKELLENQCCPIHLK 236 (345)
Q Consensus 157 ~~~~~~~~~~~l~~lgI~~D~f~~T~~~~~~~~v~~~~~~L~~kG~iy~~~~~~~yc~~c~~~l~d~el~~~~~c~~~~~ 236 (345)
++++.+.|.++|++|||.++.++++. ..|...+.+++++|+++|++|+.++
T Consensus 129 ~~~~~~~f~~d~~~Lni~~p~~~~r~-tehi~~ii~~i~~Li~~G~aY~~~g---------------------------- 179 (651)
T PTZ00399 129 ARKWEKEFFEDMKALNVRPPDVITRV-SEYVPEIVDFIQKIIDNGFAYESNG---------------------------- 179 (651)
T ss_pred HHHHHHHHHHHHHHcCCCCCccccCc-CccHHHHHHHHHHHHHCCCEEEECC----------------------------
Confidence 99999999999999999987666555 4899999999999999999997621
Q ss_pred CceEeeccccccchhHhHHHHHHHHhcCCCcccChHHHHHHHHHHhcC-CCCcc-cccCCCC---CCcccCCCCCCcEEE
Q 046127 237 PCVARKEDNYFFALSKYQKLLEDTLTENPDFVQPSFRLNEVQGWIKSG-LRDFS-ISRASVD---WGIPVPNDNKQTIYV 311 (345)
Q Consensus 237 pve~r~~~~~f~~l~~~~~~L~e~l~~~~~~~~P~~~~~~~~~wl~~g-L~D~~-ISR~~~~---WGIpvP~~~~~~iyV 311 (345)
++||++++|.+. ...+.. +.|....+....+..++ +.+-+ ++|...+ ||++.|+++.
T Consensus 180 --------svyFd~~~f~~~-~~~Yg~----L~p~~~~~~~~~~~g~~~l~~~~~~Kr~~~DFaLWk~~kpgep~----- 241 (651)
T PTZ00399 180 --------SVYFDVEAFRKA-GHVYPK----LEPESVADEDRIAEGEGALGKVSGEKRSPNDFALWKASKPGEPS----- 241 (651)
T ss_pred --------eEEEEchhcccc-hhhHHh----hChhhcCCHHHHhcccCCccccCcCCCCCccHHhhCCCCCCCCC-----
Confidence 799999999877 555554 35665555566566665 65665 8997567 9999998764
Q ss_pred ecCchhHH
Q 046127 312 WFDALLGY 319 (345)
Q Consensus 312 Wfdal~gY 319 (345)
|+ +++|+
T Consensus 242 W~-SpwG~ 248 (651)
T PTZ00399 242 WD-SPWGK 248 (651)
T ss_pred CC-CCCCC
Confidence 65 66665
No 46
>PRK01611 argS arginyl-tRNA synthetase; Reviewed
Probab=99.93 E-value=3.2e-26 Score=233.50 Aligned_cols=182 Identities=16% Similarity=0.145 Sum_probs=154.4
Q ss_pred chHHHHHH----HHHHHhhchhcchhhccccccccccccc-ccccccccccccccccccccccCCCCCCC-CCCCCCEEE
Q 046127 20 SLQKEFEE----MAARINYSIQNSLWLLNPLHSKATTHFR-NRLKFRQNLFSLSKGAVFCSYATNTDKSG-TEPADPFVL 93 (345)
Q Consensus 20 ~~~k~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~I 93 (345)
.|+|.+++ ||++|+.. | +.++..+ |++||.+++..............+.++.. +..+++++|
T Consensus 48 ~lak~~~~~p~~ia~~i~~~------i------~~v~~~~~gfiN~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~v~I 115 (507)
T PRK01611 48 QLAKKLKKNPREIAEEIVEA------I------EKVEIAGPGFINFFLDPAALAELVLAILEAGERYGRSDIGKGKKVVV 115 (507)
T ss_pred HHHHHcCCCHHHHHHHHHhh------e------eEEEEeCCCEEEEEECHHHHHHHHHHHHhchhhcCCCcCCCCCEEEE
Confidence 46677755 88888775 3 5567776 59999999866554433334444556532 346789999
Q ss_pred EccCCCCCCcCchhHHHHHHHHHHHHHHHHHcCCeEEEEcCCCCcChHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhcCc
Q 046127 94 TTPLYYVNAPPHMGSAYTTIAADAIARFQRLLGKKVIFITGTDEHGEKIAAAAADGGSSPSEHCDVVSQAYKTLWKDLDI 173 (345)
Q Consensus 94 ~~~~PypnG~LHIGHar~~i~~DvlaR~lr~~G~~V~~v~G~D~~G~~I~~~A~~~g~~p~~~~~~~~~~~~~~l~~lgI 173 (345)
++++|||||++||||+|+++++|+++|++++.||+|.++.++||+|++|...+...+..++++++.+.+.|+++|++|||
T Consensus 116 e~~spnp~g~lHiGH~R~~iigD~laR~lr~~G~~V~~~~~i~D~G~qi~~~a~~~~~~~~~~~~~~~~~~~~~l~~LgI 195 (507)
T PRK01611 116 EYVSANPTGPLHVGHLRSAVIGDALARILEFAGYDVTREYYVNDAGTQIGMLIASLELLWRKAVDISLDEIKEDLDRLGV 195 (507)
T ss_pred EecCCCCCCCCcCCchHHHHHHHHHHHHHHHcCCcEEEEeeeCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 99999999999999999999999999999999999999999999999999999888888899999999999999999999
Q ss_pred ccCccccCCChhhHHHHHHHHHHHHhCCCee-ecccCcccc
Q 046127 174 AYDKFIRTTEPKHEAIVKEFYSSVLANGDIY-KADYEGLYC 213 (345)
Q Consensus 174 ~~D~f~~T~~~~~~~~v~~~~~~L~~kG~iy-~~~~~~~yc 213 (345)
.+|.|.++++..+.+.+++++++|.++|++| +.++.+|++
T Consensus 196 ~~D~~~~es~~~~~~~~~~~~~~L~~~G~~y~~~~Ga~~~~ 236 (507)
T PRK01611 196 HFDVWFSESELYYNGKVDEVVEDLKEKGLLYVESDGALWVR 236 (507)
T ss_pred eeeEEeecCcchhcchHHHHHHHHHHCCCEEEeeCCcEEEE
Confidence 9999988888878889999999999999999 777766665
No 47
>cd00671 ArgRS_core catalytic core domain of arginyl-tRNA synthetases. Arginyl tRNA synthetase (ArgRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. There are at least three subgroups of ArgRS. One type contains both characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. The second subtype lacks the KMSKS motif; however, it has a lysine N-terminal to the HIGH motif, which serves as the functional counterpart to the second lysine of the KMSKS motif. A third group, which is found primarily in archaea and a few bacteria, lacks both the KMSKS motif and the HIGH loop lysine.
Probab=99.92 E-value=3.2e-25 Score=202.11 Aligned_cols=125 Identities=15% Similarity=0.140 Sum_probs=116.4
Q ss_pred CEEEEccCCCCCCcCchhHHHHHHHHHHHHHHHHHcCCeEEEEcCCCCcChHHHHHHHhCCCCHHHHHHHHHHHHHHHHh
Q 046127 90 PFVLTTPLYYVNAPPHMGSAYTTIAADAIARFQRLLGKKVIFITGTDEHGEKIAAAAADGGSSPSEHCDVVSQAYKTLWK 169 (345)
Q Consensus 90 ~~~I~~~~PypnG~LHIGHar~~i~~DvlaR~lr~~G~~V~~v~G~D~~G~~I~~~A~~~g~~p~~~~~~~~~~~~~~l~ 169 (345)
+++|++++|||||+|||||+|+++++|+++|++++.|++|.+++++||+|++|...|.+.+ .++++++.+.+.++++++
T Consensus 1 ~v~ve~~spN~~~~~HiGH~R~~vigD~l~R~l~~~G~~V~~~~~~~D~G~qi~~~a~~~~-~~~~~~~~~~~~~~~~~~ 79 (212)
T cd00671 1 KILVEFVSANPTGPLHVGHLRNAIIGDSLARILEFLGYDVTREYYINDWGRQIGLLILSLE-KWRKLVEESIKADLETYG 79 (212)
T ss_pred CeEEEecCCCCCCCccccccHHHHHHHHHHHHHHHCCCcEEEEeccCCcHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Confidence 5899999999999999999999999999999999999999999999999999999997664 489999999999999999
Q ss_pred hcCcccCccccCCChhhHHHHHHHHHHHHhCCCeeecccCcccccCCC
Q 046127 170 DLDIAYDKFIRTTEPKHEAIVKEFYSSVLANGDIYKADYEGLYCVNCE 217 (345)
Q Consensus 170 ~lgI~~D~f~~T~~~~~~~~v~~~~~~L~~kG~iy~~~~~~~yc~~c~ 217 (345)
+|||.+|.|.+|++ +...+.+++++|.++|++|+.++.+++|+.+.
T Consensus 80 ~L~i~~d~~~~es~--~~~~~~~~i~~L~~~g~~~~~~g~~~~~~~~~ 125 (212)
T cd00671 80 RLDVRFDVWFGESS--YLGLMGKVVELLEELGLLYEEDGALWLDLTEF 125 (212)
T ss_pred HhCCcCceecchhh--hhhHHHHHHHHHHHCCCEEEeCCcEEEechhh
Confidence 99999999998885 48899999999999999999999888886544
No 48
>TIGR00435 cysS cysteinyl-tRNA synthetase. This model finds the cysteinyl-tRNA synthetase from most but not from all species. The enzyme from one archaeal species, Archaeoglobus fulgidus, is found but the equivalent enzymes from some other Archaea, including Methanococcus jannaschii, are not found, although biochemical evidence suggests that tRNA(Cys) in these species are charged directly with Cys rather than through a misacylation and correction pathway as for tRNA(Gln).
Probab=99.91 E-value=2.5e-24 Score=217.03 Aligned_cols=130 Identities=25% Similarity=0.327 Sum_probs=118.9
Q ss_pred CCCCCCEEEEccCCCCCCcCchhHHHHHHHHHHHHHHHHHcCCeEEEEcCCCCcChHHHHHHHhCCCCHHHHHHHHHHHH
Q 046127 85 TEPADPFVLTTPLYYVNAPPHMGSAYTTIAADAIARFQRLLGKKVIFITGTDEHGEKIAAAAADGGSSPSEHCDVVSQAY 164 (345)
Q Consensus 85 ~~~~~~~~I~~~~PypnG~LHIGHar~~i~~DvlaR~lr~~G~~V~~v~G~D~~G~~I~~~A~~~g~~p~~~~~~~~~~~ 164 (345)
.+++.++++|.| ||+|++||||+|++|.+|+++||+|++||+|.+++|+||||++|+.+|++.|++|+++++.+.+.|
T Consensus 18 ~~~~v~~yvcgp--tvy~~~HiGhar~~v~~Dvl~R~lr~~G~~V~~v~n~tD~ddkIi~~A~~~g~~~~e~a~~~~~~f 95 (465)
T TIGR00435 18 VQGKVKMYVCGP--TVYDYCHIGHARTAIVFDVLRRYLRYLGYKVQYVQNITDIDDKIIKRARENGESVYEVSERFIEAY 95 (465)
T ss_pred CCCcceEEEecC--ccCCCcccccchHHHHHHHHHHHHHHcCCcEEEEEeeCCccHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 344566676666 677999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcCcccCcc-ccCCChhhHHHHHHHHHHHHhCCCeeecc-cCcccccCCCC
Q 046127 165 KTLWKDLDIAYDKF-IRTTEPKHEAIVKEFYSSVLANGDIYKAD-YEGLYCVNCEE 218 (345)
Q Consensus 165 ~~~l~~lgI~~D~f-~~T~~~~~~~~v~~~~~~L~~kG~iy~~~-~~~~yc~~c~~ 218 (345)
+++|++|||.+|.+ .+++ .|.+.+.+++++|.++|++|+.+ +.++||+.|..
T Consensus 96 ~~dl~~LgI~~d~~~~raT--~hi~~i~~~i~~L~ekG~aY~~~~g~vyfdv~~~~ 149 (465)
T TIGR00435 96 FEDMKALNVLPPDLEPRAT--EHIDEIIEFIEQLIEKGYAYVSDNGDVYFDVSKFK 149 (465)
T ss_pred HHHHHHhCCCCCcCCcccc--ccHHHHHHHHHHHHHCCCEEEecCCcEEEeccccc
Confidence 99999999999975 4555 79999999999999999999999 99999998854
No 49
>PRK00260 cysS cysteinyl-tRNA synthetase; Validated
Probab=99.91 E-value=3.1e-24 Score=216.57 Aligned_cols=128 Identities=23% Similarity=0.310 Sum_probs=117.2
Q ss_pred CCCCEEEEccCCCCCCcCchhHHHHHHHHHHHHHHHHHcCCeEEEEcCCCCcChHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 046127 87 PADPFVLTTPLYYVNAPPHMGSAYTTIAADAIARFQRLLGKKVIFITGTDEHGEKIAAAAADGGSSPSEHCDVVSQAYKT 166 (345)
Q Consensus 87 ~~~~~~I~~~~PypnG~LHIGHar~~i~~DvlaR~lr~~G~~V~~v~G~D~~G~~I~~~A~~~g~~p~~~~~~~~~~~~~ 166 (345)
+..++++|.| ||+|++||||+|+++.+|+++||+|++|++|.+++|+||+|++|+..|++.|++|+++++.+.+.|++
T Consensus 22 ~~v~~yvcgP--tvy~~~HiGHar~~v~~Dvl~R~lr~~G~~V~~v~~~tD~ddki~~~A~~~g~~~~e~~~~~~~~f~~ 99 (463)
T PRK00260 22 GKVKMYVCGP--TVYDYAHIGHARSFVVFDVLRRYLRYLGYKVTYVRNITDIDDKIIKRANEEGESIKELTERYIAAFHE 99 (463)
T ss_pred CcceEEEeCC--ccCCCcccccchhHHHHHHHHHHHHhcCCceEEeecCCCCcHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 3456666655 56699999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhcCc-ccCccccCCChhhHHHHHHHHHHHHhCCCeeecccCcccccCCCC
Q 046127 167 LWKDLDI-AYDKFIRTTEPKHEAIVKEFYSSVLANGDIYKADYEGLYCVNCEE 218 (345)
Q Consensus 167 ~l~~lgI-~~D~f~~T~~~~~~~~v~~~~~~L~~kG~iy~~~~~~~yc~~c~~ 218 (345)
+|++||| .+|.+.+++ .|.+.+.+++++|.++|++|+++++++||++.-.
T Consensus 100 ~~~~Lgi~~~d~~~r~t--~~~~~~~~~i~~L~~kG~aY~~~~~Vyfdv~~~~ 150 (463)
T PRK00260 100 DMDALNVLPPDIEPRAT--EHIPEIIELIERLIDKGHAYEADGDVYFDVRKFP 150 (463)
T ss_pred HHHHcCCCCCCcccccc--ccHHHHHHHHHHHHHCCCEEEecCeEEEeccccc
Confidence 9999999 568887777 5899999999999999999999999999988753
No 50
>TIGR03447 mycothiol_MshC cysteine--1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase. Members of this protein family are MshC, l-cysteine:1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase, an enzyme that uses ATP to ligate a Cys residue to a mycothiol precursor molecule, in the second to last step in mycothiol biosynthesis. This enzyme shows considerable homology to Cys--tRNA ligases, and many instances are misannotated as such. Mycothiol is found in Mycobacterium tuberculosis, Corynebacterium glutamicum, Streptomyces coelicolor, and various other members of the Actinobacteria. Mycothiol is an analog to glutathione.
Probab=99.91 E-value=3.4e-24 Score=211.15 Aligned_cols=128 Identities=18% Similarity=0.264 Sum_probs=119.0
Q ss_pred CCCCCEEEEccCCCCCCcCchhHHHHHHHHHHHHHHHHHcCCeEEEEcCCCCcChHHHHHHHhCCCCHHHHHHHHHHHHH
Q 046127 86 EPADPFVLTTPLYYVNAPPHMGSAYTTIAADAIARFQRLLGKKVIFITGTDEHGEKIAAAAADGGSSPSEHCDVVSQAYK 165 (345)
Q Consensus 86 ~~~~~~~I~~~~PypnG~LHIGHar~~i~~DvlaR~lr~~G~~V~~v~G~D~~G~~I~~~A~~~g~~p~~~~~~~~~~~~ 165 (345)
++.-+++||.|.|| +++||||+|++|.+|+++||+|+.|++|.|++|+||||++|+.+|++.|++|+++++++.+.|+
T Consensus 34 ~~~v~~YvCGpTvY--~~~HIGhart~V~~Dvl~R~lr~~G~~V~fV~nitD~dDKIi~~A~~~g~t~~ela~~y~~~f~ 111 (411)
T TIGR03447 34 GPEAGMYVCGITPY--DATHLGHAATYLTFDLVNRVWRDAGHRVHYVQNVTDVDDPLFERAERDGVDWRELGTSQIDLFR 111 (411)
T ss_pred CCcceEEEeCCccC--CCcccccchHHHHHHHHHHHHHhcCCceEEeeCCCchhHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 45678888888877 9999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcCcc-cCccccCCChhhHHHHHHHHHHHHhCCCeeeccc----CcccccCCC
Q 046127 166 TLWKDLDIA-YDKFIRTTEPKHEAIVKEFYSSVLANGDIYKADY----EGLYCVNCE 217 (345)
Q Consensus 166 ~~l~~lgI~-~D~f~~T~~~~~~~~v~~~~~~L~~kG~iy~~~~----~~~yc~~c~ 217 (345)
+++++|||. +|.|+++++ +.+.+++++++|.++|++|++++ .+||+++--
T Consensus 112 ~d~~~Lni~~~d~~~RaTe--~i~~ii~~i~~L~~kG~aY~~~~~~~~~VYFdv~~~ 166 (411)
T TIGR03447 112 EDMEALRVLPPRDYIGAVE--SIDEVIEMVEKLLAAGAAYEVEGPEYPDVYFSIEAT 166 (411)
T ss_pred HHHHHcCCCCCCcccCCCC--CHHHHHHHHHHHHHCCCEEecCCCCcCcEEEeccch
Confidence 999999986 899999996 48999999999999999999987 699976553
No 51
>PRK12418 cysteinyl-tRNA synthetase; Provisional
Probab=99.91 E-value=5e-24 Score=208.82 Aligned_cols=126 Identities=19% Similarity=0.283 Sum_probs=118.0
Q ss_pred CCCEEEEccCCCCCCcCchhHHHHHHHHHHHHHHHHHcCCeEEEEcCCCCcChHHHHHHHhCCCCHHHHHHHHHHHHHHH
Q 046127 88 ADPFVLTTPLYYVNAPPHMGSAYTTIAADAIARFQRLLGKKVIFITGTDEHGEKIAAAAADGGSSPSEHCDVVSQAYKTL 167 (345)
Q Consensus 88 ~~~~~I~~~~PypnG~LHIGHar~~i~~DvlaR~lr~~G~~V~~v~G~D~~G~~I~~~A~~~g~~p~~~~~~~~~~~~~~ 167 (345)
.-++++|.|.|| +++||||+|++|.+|+++||+|++|++|.+++|+||||++|+.+|++.|++|+++++++.+.|.++
T Consensus 9 ~v~~YvCGpTvY--~~~HIGh~r~~V~~Dvl~R~lr~~G~~V~~V~nitD~ddKIi~~A~~~G~~~~e~a~~~~~~f~~d 86 (384)
T PRK12418 9 TATMYVCGITPY--DATHLGHAATYLAFDLVNRVWRDAGHDVHYVQNVTDVDDPLLERAARDGVDWRDLAEREIALFRED 86 (384)
T ss_pred eeEEEecCCCCC--CCCccchhHHHHHHHHHHHHHHHcCCceEEEEecCCcchHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 457788877777 999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhcCc-ccCccccCCChhhHHHHHHHHHHHHhCCCeeeccc----CcccccCCC
Q 046127 168 WKDLDI-AYDKFIRTTEPKHEAIVKEFYSSVLANGDIYKADY----EGLYCVNCE 217 (345)
Q Consensus 168 l~~lgI-~~D~f~~T~~~~~~~~v~~~~~~L~~kG~iy~~~~----~~~yc~~c~ 217 (345)
+++||| .+|.|+++|+ +.+.+++++++|.++|++|++++ .+||+++--
T Consensus 87 ~~~Lni~~~~~~~raTe--~i~~~~~~i~~L~~kG~aY~~~~~~~~~VYFdv~~~ 139 (384)
T PRK12418 87 MEALRVLPPRDYVGAVE--SIPEVVELVEKLLASGAAYVVDDEEYPDVYFSVDAT 139 (384)
T ss_pred HHHhCCCCCCccccCCC--CHHHHHHHHHHHHHCCCEEEeCCCCCccEEEecCch
Confidence 999997 7899999996 59999999999999999999998 799986654
No 52
>PLN02946 cysteine-tRNA ligase
Probab=99.90 E-value=2.1e-23 Score=212.22 Aligned_cols=129 Identities=18% Similarity=0.228 Sum_probs=117.4
Q ss_pred CCCCCEEEEccCCCCCCcCchhHHHHHHHHHHHHHHHHHcCCeEEEEcCCCCcChHHHHHHHhCCCCHHHHHHHHHHHHH
Q 046127 86 EPADPFVLTTPLYYVNAPPHMGSAYTTIAADAIARFQRLLGKKVIFITGTDEHGEKIAAAAADGGSSPSEHCDVVSQAYK 165 (345)
Q Consensus 86 ~~~~~~~I~~~~PypnG~LHIGHar~~i~~DvlaR~lr~~G~~V~~v~G~D~~G~~I~~~A~~~g~~p~~~~~~~~~~~~ 165 (345)
++.-++|+| .|+|.|++||||+|++|.+|+++||+++.||+|.+++|+||||++|+.+|++.|++++++++++.+.|.
T Consensus 78 ~~~v~~Y~C--GpTvYd~~HIGhaR~~V~~Dvl~R~Lr~~Gy~V~~V~niTDiDDKIi~~A~~~g~~~~ela~~y~~~f~ 155 (557)
T PLN02946 78 EGKVGMYVC--GVTAYDLSHIGHARVYVTFDVLYRYLKHLGYEVRYVRNFTDVDDKIIARANELGEDPISLSRRYCEEFL 155 (557)
T ss_pred CCceeEEEe--CCccCCCCccccchhhHHHHHHHHHHHhcCCcEEEEECCCCccCHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 344555655 456779999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcCcccCccccCCChhhHHHHHHHHHHHHhCCCeeecccCcccccCCC
Q 046127 166 TLWKDLDIAYDKFIRTTEPKHEAIVKEFYSSVLANGDIYKADYEGLYCVNCE 217 (345)
Q Consensus 166 ~~l~~lgI~~D~f~~T~~~~~~~~v~~~~~~L~~kG~iy~~~~~~~yc~~c~ 217 (345)
+++++|||. +.+++|....|.+.+.+++++|+++|++|++++.+|||++--
T Consensus 156 ~d~~~LnI~-~p~~~pratehi~~ii~~i~~Li~kG~aY~~~g~VYFdv~~f 206 (557)
T PLN02946 156 SDMAYLHCL-PPSVEPRVSDHIPQIIDMIKQILDNGCAYRVDGDVYFSVDKF 206 (557)
T ss_pred HHHHHCCCC-CCCeecCcchhHHHHHHHHHHHHHCCCEEEECCeEEEecCcc
Confidence 999999998 545667777999999999999999999999999999998753
No 53
>PRK14536 cysS cysteinyl-tRNA synthetase; Provisional
Probab=99.88 E-value=2.4e-22 Score=202.39 Aligned_cols=126 Identities=19% Similarity=0.188 Sum_probs=113.5
Q ss_pred CCEEEEccCCCCCCcCchhHHHHHHHHHHHHHHHHHcCCeEEEEc----------CCCCcChHHHHHHHhCCCCHHHHHH
Q 046127 89 DPFVLTTPLYYVNAPPHMGSAYTTIAADAIARFQRLLGKKVIFIT----------GTDEHGEKIAAAAADGGSSPSEHCD 158 (345)
Q Consensus 89 ~~~~I~~~~PypnG~LHIGHar~~i~~DvlaR~lr~~G~~V~~v~----------G~D~~G~~I~~~A~~~g~~p~~~~~ 158 (345)
.++-+.+..|||++++||||+|++|.+|+++||+++.|++|.|++ |.|+||++|..+|++.|++|+++++
T Consensus 22 ~~v~mYvCGpTvy~~~HiGhar~~v~~Dvl~R~l~~~G~~V~~v~NiTDv~hl~~~~De~ddKii~~A~~~g~~~~e~a~ 101 (490)
T PRK14536 22 GHVRLYGCGPTVYNYAHIGNLRTYVFQDTLRRTLHFLGYRVTHVMNITDVGHLTDDADSGEDKMVKSAQEHGKSVLEIAA 101 (490)
T ss_pred CceEEEeeCCccCCCcccchhHHHHHHHHHHHHHHhcCCceEEEEeeccccccccCCcCCChHHHHHHHHcCCCHHHHHH
Confidence 345555556678899999999999999999999999999999997 6677799999999999999999999
Q ss_pred HHHHHHHHHHhhcCcccCccccCCChhhHHHHHHHHHHHHhCCCeeecccCcccccC
Q 046127 159 VVSQAYKTLWKDLDIAYDKFIRTTEPKHEAIVKEFYSSVLANGDIYKADYEGLYCVN 215 (345)
Q Consensus 159 ~~~~~~~~~l~~lgI~~D~f~~T~~~~~~~~v~~~~~~L~~kG~iy~~~~~~~yc~~ 215 (345)
++.+.|.+++++|||.++.++ +..+.|.+.+++++++|.++|++|++++.+|||++
T Consensus 102 ~~~~~f~~d~~~Lni~~~~~~-~rat~hi~~ii~~i~~L~~kG~aY~~~~~vyFdv~ 157 (490)
T PRK14536 102 HYTAAFFRDTARLNIERPSIV-CNATEHIQDMIALIKRLEARGHTYCAGGNVYFDIR 157 (490)
T ss_pred HHHHHHHHHHHHcCCCCCcee-cCcccHHHHHHHHHHHHHHCCCEEEECCeEEEeCC
Confidence 999999999999999997554 33468999999999999999999999999999983
No 54
>PRK14535 cysS cysteinyl-tRNA synthetase; Provisional
Probab=99.88 E-value=2.8e-22 Score=205.75 Aligned_cols=130 Identities=20% Similarity=0.217 Sum_probs=117.3
Q ss_pred CCCEEEEccCCCCCCcCchhHHHHHHHHHHHHHHHHHcCCeEEEEcCCCCcChHHHHHHHhCCCCHHHHHHHHHHHHHHH
Q 046127 88 ADPFVLTTPLYYVNAPPHMGSAYTTIAADAIARFQRLLGKKVIFITGTDEHGEKIAAAAADGGSSPSEHCDVVSQAYKTL 167 (345)
Q Consensus 88 ~~~~~I~~~~PypnG~LHIGHar~~i~~DvlaR~lr~~G~~V~~v~G~D~~G~~I~~~A~~~g~~p~~~~~~~~~~~~~~ 167 (345)
+.++-+....|+|.+.+||||+|++|.+|+++||+++.|++|.+++|+||||++|+.+|++.|++++++++++.+.|.++
T Consensus 246 ~~~V~mYvCGPTVYd~~HIGHaRt~V~~DVL~R~Lr~~Gy~V~fV~NiTD~DDKII~~A~e~G~sp~ela~~y~~~F~~d 325 (699)
T PRK14535 246 PENVRMYVCGMTVYDYCHLGHARVMVVFDMIARWLRECGYPLTYVRNITDIDDKIIARAAENGETIGELTARFIQAMHED 325 (699)
T ss_pred CCceEEEecCCcCCCCCcccchhHHHHHHHHHHHHHHcCCceEEEeCCcccchHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 34455555556777999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhcCcccCccccCCChhhHHHHHHHHHHHHhCCCeeec-ccCcccccCCCC
Q 046127 168 WKDLDIAYDKFIRTTEPKHEAIVKEFYSSVLANGDIYKA-DYEGLYCVNCEE 218 (345)
Q Consensus 168 l~~lgI~~D~f~~T~~~~~~~~v~~~~~~L~~kG~iy~~-~~~~~yc~~c~~ 218 (345)
+++|||.++.+. ++...|...+.+++++|.++|++|++ .+.+|||+++-.
T Consensus 326 ~~~LnI~~p~~~-praTeHI~~ii~lI~~LidkG~AYe~~~gsVYFdV~~f~ 376 (699)
T PRK14535 326 ADALGVLRPDIE-PKATENIPQMIAMIETLIQNGKAYPAANGDVYYAVREFA 376 (699)
T ss_pred HHHcCCCCCcEe-eCccchHHHHHHHHHHHHHCCCEEEeCCCCEEEeccccc
Confidence 999999998763 55569999999999999999999987 458999998753
No 55
>cd00672 CysRS_core catalytic core domain of cysteinyl tRNA synthetase. Cysteinyl tRNA synthetase (CysRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=99.86 E-value=8.9e-22 Score=179.47 Aligned_cols=94 Identities=24% Similarity=0.304 Sum_probs=89.0
Q ss_pred CCCCCEEEEccCCCCCCcCchhHHHHHHHHHHHHHHHHHcCCeEEEEcCCCCcChHHHHHHHhCCCCHHHHHHHHHHHHH
Q 046127 86 EPADPFVLTTPLYYVNAPPHMGSAYTTIAADAIARFQRLLGKKVIFITGTDEHGEKIAAAAADGGSSPSEHCDVVSQAYK 165 (345)
Q Consensus 86 ~~~~~~~I~~~~PypnG~LHIGHar~~i~~DvlaR~lr~~G~~V~~v~G~D~~G~~I~~~A~~~g~~p~~~~~~~~~~~~ 165 (345)
+++.+++++.|.|| |++||||+|+++.+|+++||+|++|++|.+++|+|+||+||+.+|++.|++|+++++++.+.|+
T Consensus 18 ~~~~~~y~~gpt~y--~~~HiGH~r~~v~~Dvl~R~lr~~G~~V~~~~g~dd~g~ki~~~A~~~g~~p~e~~~~~~~~f~ 95 (213)
T cd00672 18 PGLVTMYVCGPTVY--DYAHIGHARTYVVFDVLRRYLEDLGYKVRYVQNITDIDDKIIKRAREEGLSWKEVADYYTKEFF 95 (213)
T ss_pred CCCceEEEeCCccC--CCcccccchhHHHHHHHHHHHHhcCCeeEEEeecCCCCCHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 35667888877766 8999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcCccc-CccccC
Q 046127 166 TLWKDLDIAY-DKFIRT 181 (345)
Q Consensus 166 ~~l~~lgI~~-D~f~~T 181 (345)
+++++|||++ |.|++|
T Consensus 96 ~~~~~l~i~~~d~~~rt 112 (213)
T cd00672 96 EDMKALNVLPPDVVPRV 112 (213)
T ss_pred HHHHHcCCCCCCcceee
Confidence 9999999999 999998
No 56
>PRK14534 cysS cysteinyl-tRNA synthetase; Provisional
Probab=99.86 E-value=4.1e-21 Score=192.71 Aligned_cols=127 Identities=23% Similarity=0.238 Sum_probs=114.2
Q ss_pred CEEEEccCCCCCCcCchhHHHHHHHHHHHHHHHHHcCCeEEEE---------cCC-CCcChHHHHHHHhCCCCHHHHHHH
Q 046127 90 PFVLTTPLYYVNAPPHMGSAYTTIAADAIARFQRLLGKKVIFI---------TGT-DEHGEKIAAAAADGGSSPSEHCDV 159 (345)
Q Consensus 90 ~~~I~~~~PypnG~LHIGHar~~i~~DvlaR~lr~~G~~V~~v---------~G~-D~~G~~I~~~A~~~g~~p~~~~~~ 159 (345)
++-+....|||...+||||+|++|.+|+++||++++|++|.++ +|. |+||++|+.+|++.|+++++++++
T Consensus 21 ~v~mY~CGpTVYd~~HiGh~r~~v~~Dvl~R~l~~~G~~V~~v~NiTDIghltg~~D~gddKIi~~A~~~g~~~~e~a~~ 100 (481)
T PRK14534 21 DVKVYACGPTVYNYAHIGNFRTYIFEDLLIKSLRLLKYNVNYAMNITDIGHLTGDFDDGEDKVVKAARERGLTVYEISRF 100 (481)
T ss_pred ceEEEeCCCCCCCCCCccchhHHHHHHHHHHHHHHcCCceEEEEeccccccccCCccCCCcHHHHHHHHcCCCHHHHHHH
Confidence 4555555567779999999999999999999999999999995 444 344899999999999999999999
Q ss_pred HHHHHHHHHhhcCcccCccccCCChhhHHHHHHHHHHHHhCCCeeecccCcccccCCC
Q 046127 160 VSQAYKTLWKDLDIAYDKFIRTTEPKHEAIVKEFYSSVLANGDIYKADYEGLYCVNCE 217 (345)
Q Consensus 160 ~~~~~~~~l~~lgI~~D~f~~T~~~~~~~~v~~~~~~L~~kG~iy~~~~~~~yc~~c~ 217 (345)
+.+.|.+++++|||.++.++++. ..|.+.+++++++|.++|++|++++.++||+.+-
T Consensus 101 ~~~~f~~d~~~Lni~~~~~~p~a-tehi~~~i~~i~~L~~kG~aY~~~~~vyFdv~~~ 157 (481)
T PRK14534 101 FTEAFFDDCKKLNIVYPDKVLVA-SEYIPIMIEVVKVLEENGFTYFVNGNVYFDTSCF 157 (481)
T ss_pred HHHHHHHHHHHcCCCCCceecCc-cchHHHHHHHHHHHHHCCCEEEECCeEEEecccc
Confidence 99999999999999999888764 6899999999999999999999999999999984
No 57
>COG0018 ArgS Arginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=99.85 E-value=1.8e-21 Score=199.45 Aligned_cols=186 Identities=17% Similarity=0.187 Sum_probs=152.9
Q ss_pred cchHHHHHH----HHHHHhhchhcchhhccccccccccccc-ccccccccccccccccccccccCCCC-C-CCCCCCCCE
Q 046127 19 LSLQKEFEE----MAARINYSIQNSLWLLNPLHSKATTHFR-NRLKFRQNLFSLSKGAVFCSYATNTD-K-SGTEPADPF 91 (345)
Q Consensus 19 ~~~~k~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~ 91 (345)
..|||.+++ ||++|+-+|....++ +.++..+ |++||.+++.++.......+....++ + +....++++
T Consensus 46 ~~laK~~~~~P~eiA~~i~~~l~~~~~~------~~veiaGpgfINf~l~~~~~~~~~~~~l~~~~~~~G~~~~~~~~kV 119 (577)
T COG0018 46 FQLAKKLGKNPREIAEEIAEKLDTDEII------EKVEIAGPGFINFFLSPEFLAELLLEILEKGDDRYGRSKLGKGKKV 119 (577)
T ss_pred HHHhhhcCCCHHHHHHHHHHhccccCcE------eEEEEcCCCEEEEEECHHHHHHHHHHHHHhcccccCccccCCCCEE
Confidence 357777766 999999999999877 7888888 99999999866666555555544444 2 234567899
Q ss_pred EEEccCCCCCCcCchhHHHHHHHHHHHHHHHHHcCCeEEEEcCCCCcChHHHHHHH------------------------
Q 046127 92 VLTTPLYYVNAPPHMGSAYTTIAADAIARFQRLLGKKVIFITGTDEHGEKIAAAAA------------------------ 147 (345)
Q Consensus 92 ~I~~~~PypnG~LHIGHar~~i~~DvlaR~lr~~G~~V~~v~G~D~~G~~I~~~A~------------------------ 147 (345)
+|...+|||+|||||||+|++++||+++|.++..||+|.....++|.|..|...+.
T Consensus 120 ~iE~sSaNptkplHiGHlR~aiiGDsLaril~~~Gy~V~r~~yvnD~G~Q~~~l~~~~~~~~~e~~~~~~~~~~~lg~~y 199 (577)
T COG0018 120 VIEYSSANPTGPLHIGHLRNAIIGDSLARILEFLGYDVTRENYVNDWGTQIGMLALSYEKRGREALGLTPEPDGYLGEYY 199 (577)
T ss_pred EEEEeCCCCCCCcccchhhhhHHHHHHHHHHHHcCCCeeEEeeECcHHHHHHHHHHHHHHhccccccCCCCcchHHHHHH
Confidence 99999999999999999999999999999999999999999999999977533221
Q ss_pred --------h-CCCC---------------H-----HHHHHHHHHHHHHHHhhcCcccCccccCCChhhHHHHHHHHHHHH
Q 046127 148 --------D-GGSS---------------P-----SEHCDVVSQAYKTLWKDLDIAYDKFIRTTEPKHEAIVKEFYSSVL 198 (345)
Q Consensus 148 --------~-~g~~---------------p-----~~~~~~~~~~~~~~l~~lgI~~D~f~~T~~~~~~~~v~~~~~~L~ 198 (345)
+ .+.+ . +.+++....+|+++|++|||.||.|+.+++..+...+.+++..|.
T Consensus 200 ~~i~~~~~~~~~~~~~~~~~~~~k~e~~d~~~~lw~~~v~~~l~~~k~~l~~l~V~fD~~~~E~e~~~~~~~~~vv~~L~ 279 (577)
T COG0018 200 VKIAKDLEEDPGNDEEEAREEVEKLESGDEEAELWRKFVDLSLEGIKETLDRLGVKFDVYDSEGESFYNGKVEKVVEDLE 279 (577)
T ss_pred HHHHHHHHhCcccchHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHhCcccceeeccchhhhcccHHHHHHHHH
Confidence 0 1100 0 126788899999999999999999998888888889999999999
Q ss_pred hCCCeeecccCc
Q 046127 199 ANGDIYKADYEG 210 (345)
Q Consensus 199 ~kG~iy~~~~~~ 210 (345)
++|++|+.++..
T Consensus 280 ~~~~~~e~~GA~ 291 (577)
T COG0018 280 EKGLLYEDDGAL 291 (577)
T ss_pred hcCCEeeeCCeE
Confidence 999999977765
No 58
>TIGR00456 argS arginyl-tRNA synthetase. This model recognizes arginyl-tRNA synthetase in every completed genome to date. An interesting feature of the alignment of all arginyl-tRNA synthetases is a fairly deep split between two families. One family includes archaeal, eukaryotic and organellar, spirochete, E. coli, and Synechocystis sp. The second, sharing a deletion of about 25 residues in the central region relative to the first, includes Bacillus subtilis, Aquifex aeolicus, the Mycoplasmas and Mycobacteria, and the Gram-negative bacterium Helicobacter pylori.
Probab=99.84 E-value=1.1e-20 Score=195.18 Aligned_cols=189 Identities=15% Similarity=0.153 Sum_probs=147.7
Q ss_pred cchHHHHHH----HHHHHhhchhcchhhcccccccccccccccccccccccccccc-cccccccCCCCCCCCCCCCCEEE
Q 046127 19 LSLQKEFEE----MAARINYSIQNSLWLLNPLHSKATTHFRNRLKFRQNLFSLSKG-AVFCSYATNTDKSGTEPADPFVL 93 (345)
Q Consensus 19 ~~~~k~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~I 93 (345)
..|+|.+++ ||++|+..+.....| +.++..++++||.+++...... ....+.....++.....+++++|
T Consensus 43 ~~lak~~~~~P~~iA~~i~~~l~~~~~i------~~ve~~gpfiN~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~v~v 116 (566)
T TIGR00456 43 FPLAKVLKKNPRAIAEEIVLKLKTGEII------EKVEAAGPFINFFLSPQKLLERLIQKILTQKEDYGSKKLKNKKIII 116 (566)
T ss_pred HHHHHHcCCCHHHHHHHHHHhCCCcCcE------eEEEEeCCEEEEEEcHHHHHHHHHHHHHhcccccCCCCCCCCeEEE
Confidence 347788766 999999999765555 6788888899999998333332 22334445556533333689999
Q ss_pred EccCCCCCCcCchhHHHHHHHHHHHHHHHHHcCCeEEEEcCCCCcChHHHHHHHh---C---------------------
Q 046127 94 TTPLYYVNAPPHMGSAYTTIAADAIARFQRLLGKKVIFITGTDEHGEKIAAAAAD---G--------------------- 149 (345)
Q Consensus 94 ~~~~PypnG~LHIGHar~~i~~DvlaR~lr~~G~~V~~v~G~D~~G~~I~~~A~~---~--------------------- 149 (345)
+.++|||+|++||||+|+++++|+++|++++.||+|.....++|.|..+...+.. .
T Consensus 117 e~~spn~~~~~hiGh~r~~~~gd~l~r~~~~~g~~v~r~~yinD~G~Q~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~Y~ 196 (566)
T TIGR00456 117 EFSSANPAGPLHIGHLRNAIIGDSLARILEFLGYDVIREYYVNDWGRQFGLLALGVEKFGNEKLNEAVKKPDHGLEGFYV 196 (566)
T ss_pred EecCCCCCCCCchhhhHHHHHHHHHHHHHHHCCCCeeEEeeecchHHHHHHHHHHHHHhCCccccCcccCChHHHHHHHH
Confidence 9999999999999999999999999999999999999999999988765433310 0
Q ss_pred ------------------------CCCH------HHHHHHHHHHHHHHHhhcCcccCccccCCChhhHHHHHHHHHHHHh
Q 046127 150 ------------------------GSSP------SEHCDVVSQAYKTLWKDLDIAYDKFIRTTEPKHEAIVKEFYSSVLA 199 (345)
Q Consensus 150 ------------------------g~~p------~~~~~~~~~~~~~~l~~lgI~~D~f~~T~~~~~~~~v~~~~~~L~~ 199 (345)
.-++ +.+++...+.|+++|++|||.||.|+.+.+..+.+.+..++++|.+
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~le~~d~~~~~~w~~~~~~~l~~~~~~~~~l~V~fD~~~~E~e~~~~~~~~~v~~~L~~ 276 (566)
T TIGR00456 197 EINKRLEENEELEEEARELFVKLESGDEEAIKLWKRLVEYSLEGIKETLARLNIHFDSFVWEGESVKNGMVPKVLEDLKE 276 (566)
T ss_pred HHHHHHhhCccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHcCCceeeeeccccccccccHHHHHHHHHH
Confidence 0111 2456777899999999999999999877877788889999999999
Q ss_pred CCCeeecccCccccc
Q 046127 200 NGDIYKADYEGLYCV 214 (345)
Q Consensus 200 kG~iy~~~~~~~yc~ 214 (345)
+|++|++ +..|.+.
T Consensus 277 ~g~~~~~-Ga~~~~~ 290 (566)
T TIGR00456 277 KGLVVED-GALWLDL 290 (566)
T ss_pred CCCEEEc-CCEEEEc
Confidence 9999977 7776553
No 59
>PRK12451 arginyl-tRNA synthetase; Reviewed
Probab=99.83 E-value=2.6e-20 Score=192.03 Aligned_cols=186 Identities=11% Similarity=0.149 Sum_probs=145.0
Q ss_pred cchHHHHHH----HHHHHhhchhcchhhcccccccccccccccccccccccccccccc-cccccCCCCCCCC-CCCCCEE
Q 046127 19 LSLQKEFEE----MAARINYSIQNSLWLLNPLHSKATTHFRNRLKFRQNLFSLSKGAV-FCSYATNTDKSGT-EPADPFV 92 (345)
Q Consensus 19 ~~~~k~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~ 92 (345)
..|+|.+++ ||++|+..++.. .| +.++..++++||.+++..+..... .-+...+.++..+ +++++++
T Consensus 44 ~~lak~~~~~P~~iA~~i~~~l~~~-~i------~~ve~~g~fiN~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~v~ 116 (562)
T PRK12451 44 FSLAKQYKKAPAIIAKEVAEKLSDP-FF------TKVEAVGPYVNVFFNRETVSDAVLKTILAEKEEYGQNHFGCEKTVV 116 (562)
T ss_pred HHHHHHcCCCHHHHHHHHHHhcccc-cc------ceeEeeCCEEEEEECHHHHHHHHHHHHHhhHhhcCCCccCCCCEEE
Confidence 568888854 999999999654 35 668888899999999865543322 2234445565333 4468999
Q ss_pred EEccCCCCCCcCchhHHHHHHHHHHHHHHHHHcCCeEEEEcCCCCcChHHHHHHH---hCCC------------------
Q 046127 93 LTTPLYYVNAPPHMGSAYTTIAADAIARFQRLLGKKVIFITGTDEHGEKIAAAAA---DGGS------------------ 151 (345)
Q Consensus 93 I~~~~PypnG~LHIGHar~~i~~DvlaR~lr~~G~~V~~v~G~D~~G~~I~~~A~---~~g~------------------ 151 (345)
|.+.+|||+|||||||+|++++||+++|.++..||+|.....++|.|..+...+. +.|.
T Consensus 117 vE~sSpNp~kplHvGH~R~aiiGd~l~ril~~~G~~V~r~nyinD~G~Q~~~l~~~~~~~~~~~~~~~~~~~~l~~~Y~~ 196 (562)
T PRK12451 117 IDYSSPNIAKPFSMGHLRSTMIGNALKHIAEKCGYEVVGINYIGDWGTQFGKLITAYKKWGNEAVVKEDPIRELFKLYVQ 196 (562)
T ss_pred EEecCCCCCCCcccchhhhHHHHHHHHHHHHHCCCCeEEEeeecCchHHHHHHHHHHHHhCCccccccCchHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999987544331 0010
Q ss_pred -------------------------C------HHHHHHHHHHHHHHHHhhcCcccCccccCCChhhHHHHHHHHHHHHhC
Q 046127 152 -------------------------S------PSEHCDVVSQAYKTLWKDLDIAYDKFIRTTEPKHEAIVKEFYSSVLAN 200 (345)
Q Consensus 152 -------------------------~------p~~~~~~~~~~~~~~l~~lgI~~D~f~~T~~~~~~~~v~~~~~~L~~k 200 (345)
+ .+.+++...+.|+++|++|||.||.|. .++.|.+.+.+++++|.++
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~~le~gd~~~~~~w~~~~~~~l~~~~~~~~~l~V~fD~~~--~es~~~~~~~~v~~~L~~~ 274 (562)
T PRK12451 197 FHEEVKDDEELEEEGRAWFKKLEEGDEEAVELWNWFRHESLKEFSRIYELLGVEFTNFQ--GEAFYNDLMEDFIGILEEH 274 (562)
T ss_pred HHHhhccChhHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHHcCCCceeec--chHhhhhhHHHHHHHHHHC
Confidence 1 124467778899999999999999553 3446778889999999999
Q ss_pred CCeeecccCcccc
Q 046127 201 GDIYKADYEGLYC 213 (345)
Q Consensus 201 G~iy~~~~~~~yc 213 (345)
|++|+.++..|.+
T Consensus 275 g~~~e~dGa~~~~ 287 (562)
T PRK12451 275 DLLEESEGALVVN 287 (562)
T ss_pred CCEEecCCeEEEE
Confidence 9999998887754
No 60
>PF01406 tRNA-synt_1e: tRNA synthetases class I (C) catalytic domain; InterPro: IPR015803 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Cysteinyl-tRNA synthetase (6.1.1.16 from EC) is an alpha monomer and belongs to class Ia.; GO: 0000166 nucleotide binding, 0004817 cysteine-tRNA ligase activity, 0005524 ATP binding, 0006423 cysteinyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3SP1_B 3TQO_A 3C8Z_B 1LI5_B 1LI7_B 1U0B_B.
Probab=99.82 E-value=8.4e-20 Score=172.31 Aligned_cols=126 Identities=22% Similarity=0.336 Sum_probs=107.0
Q ss_pred CCCCEEEEccCCCCCCcCchhHHHHHHHHHHHHHHHHHcCCeEEEEcCCCCcChHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 046127 87 PADPFVLTTPLYYVNAPPHMGSAYTTIAADAIARFQRLLGKKVIFITGTDEHGEKIAAAAADGGSSPSEHCDVVSQAYKT 166 (345)
Q Consensus 87 ~~~~~~I~~~~PypnG~LHIGHar~~i~~DvlaR~lr~~G~~V~~v~G~D~~G~~I~~~A~~~g~~p~~~~~~~~~~~~~ 166 (345)
+.-++++|.| +|...+||||+|++|..|++.|+++..|++|.++.+++|.+++|..+|++.|+++.++++++.++|.+
T Consensus 7 ~~v~~Y~CGP--TVYd~~HiGhaR~~v~~D~l~R~L~~~g~~V~~V~NiTDiDDKii~~A~~~g~~~~ela~~y~~~f~~ 84 (300)
T PF01406_consen 7 GKVRMYVCGP--TVYDYAHIGHARTYVFFDVLRRYLEYLGYDVTYVMNITDIDDKIIKRAREEGVSPQELARRYEEEFFE 84 (300)
T ss_dssp TEEEEEEEEE--BTTS--BHHHHHHHHHHHHHHHHHHHTT-EEEEEEEEB-SSHHHHHHHHHTTS-HHHHHHHHHHHHHH
T ss_pred CeEEEEcCCC--CCCCCCCCcceeeeeeHHHHHHHHHHcCCeEEEEEeccccchHHHHHHHhccCCHHHHHHHHHHHHHH
Confidence 3445555554 56699999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhcCccc-CccccCCChhhHHHHHHHHHHHHhCCCeeecc-cCcccccCC
Q 046127 167 LWKDLDIAY-DKFIRTTEPKHEAIVKEFYSSVLANGDIYKAD-YEGLYCVNC 216 (345)
Q Consensus 167 ~l~~lgI~~-D~f~~T~~~~~~~~v~~~~~~L~~kG~iy~~~-~~~~yc~~c 216 (345)
+|++|||.. |.+.+.+ .|.+.+.+++++|+++|++|..+ +.++|+++-
T Consensus 85 dm~~Lnv~~p~~~prat--e~i~~ii~~i~~Li~~G~AY~~~~g~VYFdv~~ 134 (300)
T PF01406_consen 85 DMKALNVLPPDHYPRAT--EHIPEIIELIEKLIDKGHAYESEDGSVYFDVSK 134 (300)
T ss_dssp HHHHTT----SEEEEGG--GGHHHHHHHHHHHHHTTSEEEETTSEEEE-CCG
T ss_pred HHHHcCCCCCccccchh--ccHHHHHHHHHHHHHCCCeEEcCCCcEEEeecc
Confidence 999999986 6887777 69999999999999999999999 999998763
No 61
>PLN02286 arginine-tRNA ligase
Probab=99.81 E-value=1.7e-19 Score=186.29 Aligned_cols=186 Identities=14% Similarity=0.171 Sum_probs=142.2
Q ss_pred cchHHHHH------H----HHHHHhhchhcchhhccccccccccccc-ccccccccccccccccccccccCCCCCCCCCC
Q 046127 19 LSLQKEFE------E----MAARINYSIQNSLWLLNPLHSKATTHFR-NRLKFRQNLFSLSKGAVFCSYATNTDKSGTEP 87 (345)
Q Consensus 19 ~~~~k~~~------~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (345)
.+|||.++ + ||++|+..+++...| +.++..+ |+|||++++.++......-......+.....+
T Consensus 42 ~~lak~~~~~~~~~k~P~~iA~~i~~~l~~~~~i------~~v~vagpGfiNf~l~~~~l~~~l~~~~~~~~~~g~~~~~ 115 (576)
T PLN02286 42 MGLWSKLKGKGTSFKNPRAVAQAIVKNLPASEMI------ESTSVAGPGFVNVRLSASWLAKRIERMLVDGIDTWAPTLP 115 (576)
T ss_pred HHHHHHhCccccccCCHHHHHHHHHHhCccccce------eeEEEcCCCeEEEEECHHHHHHHHHHHHHcCcccCCCCCC
Confidence 45788887 5 999999999876555 6677776 59999999876555433333333333222334
Q ss_pred CCCEEEEccCCCCCCcCchhHHHHHHHHHHHHHHHHHcCCeEEEEcCCCCcChHHHHHHHh----CCC------------
Q 046127 88 ADPFVLTTPLYYVNAPPHMGSAYTTIAADAIARFQRLLGKKVIFITGTDEHGEKIAAAAAD----GGS------------ 151 (345)
Q Consensus 88 ~~~~~I~~~~PypnG~LHIGHar~~i~~DvlaR~lr~~G~~V~~v~G~D~~G~~I~~~A~~----~g~------------ 151 (345)
+++++|.+.+|||+|||||||+|++++||+|+|.++..||+|.....++|.|..+...+.. .+.
T Consensus 116 ~~~v~VEfsSpNp~kplHvGHlRsaiiGdsLaril~~~G~~V~r~nyinD~G~Qi~~l~~~~~~~~~~~~~~~~~~i~~l 195 (576)
T PLN02286 116 VKRAVVDFSSPNIAKEMHVGHLRSTIIGDTLARMLEFSGVEVLRRNHVGDWGTQFGMLIEHLFEKFPNWESVSDQAIGDL 195 (576)
T ss_pred CceEEEEecCCCCCCCCccccccchhhHHHHHHHHHHcCCceEEEEeecchHHHHHHHHHHHHHhcCcccccCcccHHHH
Confidence 5899999999999999999999999999999999999999999999999999876443321 000
Q ss_pred -------------CH------------------------HHHHHHHHHHHHHHHhhcCcccCccccCCChhhHHHHHHHH
Q 046127 152 -------------SP------------------------SEHCDVVSQAYKTLWKDLDIAYDKFIRTTEPKHEAIVKEFY 194 (345)
Q Consensus 152 -------------~p------------------------~~~~~~~~~~~~~~l~~lgI~~D~f~~T~~~~~~~~v~~~~ 194 (345)
++ +.+++.....|++++++|||.||.. .++.|.+.+.+++
T Consensus 196 ~~~Y~~~~~~~~~~~~~~~~~~~~~~~le~gd~~~~~lw~~~~~~~~~~~~~~y~~l~V~fd~~---ges~y~~~~~~vi 272 (576)
T PLN02286 196 QEFYKAAKKRFDEDEEFKARAQQAVVRLQGGDPEYRAAWAKICEISRREFEKVYQRLRVELEEK---GESFYNPYIPGVI 272 (576)
T ss_pred HHHHHHhhhhccCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHhCCeeeec---CchhhhhhHHHHH
Confidence 00 1345666788999999999999973 3446777789999
Q ss_pred HHHHhCCCeeecccCcccc
Q 046127 195 SSVLANGDIYKADYEGLYC 213 (345)
Q Consensus 195 ~~L~~kG~iy~~~~~~~yc 213 (345)
..|.++|++|+.++..|.+
T Consensus 273 ~~L~~~g~~~e~dGa~~v~ 291 (576)
T PLN02286 273 EELESKGLVVESDGARVIF 291 (576)
T ss_pred HHHHHCCCEEeeCCceEee
Confidence 9999999999998887753
No 62
>cd00674 LysRS_core_class_I catalytic core domain of class I lysyl tRNA synthetase. Class I lysyl tRNA synthetase (LysRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. The class I LysRS is found only in archaea and some bacteria and has evolved separately from class II LysRS, as the two do not share structural or sequence similarity.
Probab=99.79 E-value=2.1e-19 Score=174.72 Aligned_cols=129 Identities=19% Similarity=0.263 Sum_probs=110.8
Q ss_pred CCCEEEEccCCCCCCcCchhHHHHHHHHHHHHHHHHHcCCeEEEEcCCCCc------------------ChHHHHHHHhC
Q 046127 88 ADPFVLTTPLYYVNAPPHMGSAYTTIAADAIARFQRLLGKKVIFITGTDEH------------------GEKIAAAAADG 149 (345)
Q Consensus 88 ~~~~~I~~~~PypnG~LHIGHar~~i~~DvlaR~lr~~G~~V~~v~G~D~~------------------G~~I~~~A~~~ 149 (345)
+++++|+++++ |||.+||||++.++.+|+++|++|++|++|.+++|+|+| |.|+...++..
T Consensus 18 ~~~~~v~tgi~-psG~~HIG~~~e~i~~D~i~R~lr~~G~~v~~v~~~Dd~d~lrKvp~~l~~~~~~~~G~pi~~ip~p~ 96 (353)
T cd00674 18 KEKYVVASGIS-PSGHIHIGNFREVITADLVARALRDLGFEVRLIYSWDDYDRLRKVPPNVPESYEQYIGMPLSSVPDPF 96 (353)
T ss_pred CCeEEEecCCC-CCCCcccCccHHHHHHHHHHHHHHHcCCCEEEEEEEcCCCcccccccchhhHHHHhcCccchhchhhc
Confidence 35789998884 999999999999999999999999999999999999999 78888888888
Q ss_pred CCCHHHHHHHHHHHHHHHHhhcCcccCccccCCChhhHHHHHHHHHHHHhCCCeee------c--ccC-----cccccCC
Q 046127 150 GSSPSEHCDVVSQAYKTLWKDLDIAYDKFIRTTEPKHEAIVKEFYSSVLANGDIYK------A--DYE-----GLYCVNC 216 (345)
Q Consensus 150 g~~p~~~~~~~~~~~~~~l~~lgI~~D~f~~T~~~~~~~~v~~~~~~L~~kG~iy~------~--~~~-----~~yc~~c 216 (345)
|..+ ++++++.+.+++.|+.|||++|.+.+|....+....+.++..|.+++.|.+ + ... ..+|++|
T Consensus 97 g~~~-~~~d~~~~~f~~~l~~lgi~~d~~~~T~~y~~g~~~~~i~~~L~~~~~I~~i~~~~~~~~~~~~~~P~~p~c~~c 175 (353)
T cd00674 97 GCCE-SYAEHFERPFEESLEKLGIEVEFISQSQMYKSGLYDENILIALEKRDEIMAILNEYRGRELQETWYPFMPYCEKC 175 (353)
T ss_pred CCCH-HHHHHHHHHHHHHHHHcCCeeeeeecCCchhhchHHHHHHHHHHHCChHHHHHHHhcCCccCCCceeeeeecCCc
Confidence 8888 999999999999999999999966555555556788889999999988753 1 122 3459999
Q ss_pred CC
Q 046127 217 EE 218 (345)
Q Consensus 217 ~~ 218 (345)
+.
T Consensus 176 g~ 177 (353)
T cd00674 176 GK 177 (353)
T ss_pred Cc
Confidence 93
No 63
>COG0215 CysS Cysteinyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=99.79 E-value=4.3e-19 Score=175.39 Aligned_cols=136 Identities=24% Similarity=0.256 Sum_probs=120.2
Q ss_pred CCCCCCCCCCCCEEEEccCCCCCCcCchhHHHHHHHHHHHHHHHHHcCCeEEEEcCCCCcChHHHHHHHhCCCCHHHHHH
Q 046127 79 NTDKSGTEPADPFVLTTPLYYVNAPPHMGSAYTTIAADAIARFQRLLGKKVIFITGTDEHGEKIAAAAADGGSSPSEHCD 158 (345)
Q Consensus 79 ~~~~~~~~~~~~~~I~~~~PypnG~LHIGHar~~i~~DvlaR~lr~~G~~V~~v~G~D~~G~~I~~~A~~~g~~p~~~~~ 158 (345)
..|.+..++.-++|||.| ||....||||+|++|..|++.||++.+||.|.||.+++|.+++|..+|.+.|.+..++++
T Consensus 13 e~F~P~~~~~V~mYvCGp--TVYd~~HIGhaRt~V~fDvl~R~L~~~Gy~V~yV~NiTDIDDKIi~rA~~~g~~~~ev~~ 90 (464)
T COG0215 13 EEFVPIDPGKVKMYVCGP--TVYDYAHIGHARTYVVFDVLRRYLRYLGYKVTYVRNITDIDDKIINRAREEGLSIREVAE 90 (464)
T ss_pred ecccCCCCCeEEEEecCC--ccCCccccccCcceehHHHHHHHHHHhCCeEEEEeccccccHHHHHHHHHhCCCHHHHHH
Confidence 344333334456666655 566999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcCcc-cCccccCCChhhHHHHHHHHHHHHhCCCeeec-ccCcccccCCCC
Q 046127 159 VVSQAYKTLWKDLDIA-YDKFIRTTEPKHEAIVKEFYSSVLANGDIYKA-DYEGLYCVNCEE 218 (345)
Q Consensus 159 ~~~~~~~~~l~~lgI~-~D~f~~T~~~~~~~~v~~~~~~L~~kG~iy~~-~~~~~yc~~c~~ 218 (345)
++.++|.+++++|||. .|..++.| .|...+.+++++|.++|++|.. ++.++|++++-.
T Consensus 91 ~~i~~f~~D~~aL~v~~p~~~PraT--e~I~~iI~~I~~LiekG~AY~~~~G~VYFdv~~f~ 150 (464)
T COG0215 91 RYIAAFFEDMDALNVLPPDIEPRAT--EHIDEIIEFIEKLIEKGYAYVADDGDVYFDVSKFK 150 (464)
T ss_pred HHHHHHHHHHHHhCCCCCcccCcHh--hCHHHHHHHHHHHHHCCceEEecCCcEEEecccch
Confidence 9999999999999995 68888887 6999999999999999999998 678999887654
No 64
>PF00750 tRNA-synt_1d: tRNA synthetases class I (R); InterPro: IPR015945 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the core region of arginyl-tRNA synthetase (6.1.1.19 from EC), which has been crystallized and preliminary X-ray crystallographic analysis of yeast arginyl-tRNA synthetase-yeast tRNAArg complexes is available []. ; GO: 0000166 nucleotide binding, 0004814 arginine-tRNA ligase activity, 0005524 ATP binding, 0006420 arginyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 2ZUE_A 2ZUF_A 3FNR_A 1IQ0_A 1F7V_A 1F7U_A 1BS2_A 3GDZ_B.
Probab=99.71 E-value=3e-17 Score=160.64 Aligned_cols=136 Identities=20% Similarity=0.175 Sum_probs=103.7
Q ss_pred CCCCCCCCCCCCEEEEccCCCCCCcCchhHHHHHHHHHHHHHHHHHcCCeEEEEcCCCCcChHHHHHHHh----------
Q 046127 79 NTDKSGTEPADPFVLTTPLYYVNAPPHMGSAYTTIAADAIARFQRLLGKKVIFITGTDEHGEKIAAAAAD---------- 148 (345)
Q Consensus 79 ~~~~~~~~~~~~~~I~~~~PypnG~LHIGHar~~i~~DvlaR~lr~~G~~V~~v~G~D~~G~~I~~~A~~---------- 148 (345)
+.+....+.+++++|..++|||+|||||||+|++++||+++|.++..||+|.....++|.|..+...+..
T Consensus 10 ~~y~~~~~~~~kv~VE~sSpNp~kplHvGHlR~~iiGd~laril~~~G~~V~r~nyigD~G~Q~~~l~~~~~~~~~~~~~ 89 (354)
T PF00750_consen 10 EEYGSEKGKGKKVVVEFSSPNPTKPLHVGHLRNTIIGDSLARILEAAGYDVTRENYIGDWGTQIGLLAASYKKFGDEELL 89 (354)
T ss_dssp GGTT--TTTSEEEEEEE---BTTSS-BHHHHHHHHHHHHHHHHHHHTTEEEEEEEEEBTTSHHHHHHHHHHHHHHHHHTS
T ss_pred hhcccccCCCCEEEEEecCCCCCCCCcCCcchhhhhhHHHHHHHHHcCCeeeeEEEECCCCHHHHHHHHHHHhhhhhhhc
Confidence 3443445678999999999999999999999999999999999999999999999999999876443320
Q ss_pred ---------------------C------CC------------------CHHHHHHH-HHHHHHHHHhhcCcccCccccCC
Q 046127 149 ---------------------G------GS------------------SPSEHCDV-VSQAYKTLWKDLDIAYDKFIRTT 182 (345)
Q Consensus 149 ---------------------~------g~------------------~p~~~~~~-~~~~~~~~l~~lgI~~D~f~~T~ 182 (345)
. .. ...++... +.+.++++|+++++.+|.++.+.
T Consensus 90 ~~~~~~~l~~~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~gd~~~~~~~~~~~~~~~k~~l~~l~i~fDv~~~E~ 169 (354)
T PF00750_consen 90 EEDPIKHLEDLYVGANKRDEADEIAEKEPEELEEEAREYLKKLEQGDEEFRELWQKYILEWSKETLQRLYIRFDVWFDES 169 (354)
T ss_dssp HSSCHHHHHHHHHHHHHHHHHTTCSSGCCCCHHHHHHHHHHHHHHCCTTHHHHHHHHHHHHHHHHHHHTT---SEEEEHC
T ss_pred ccccccchhhhhhhhhhhhhhhhhccccccccccccceeeeecccccHHHHHHHHHHHHHHHHHHHHHHHHHhCcCcccc
Confidence 0 00 11134444 77889999999999999888777
Q ss_pred ChhhHHHHHHHHHHHHhCCCeeecccCccccc
Q 046127 183 EPKHEAIVKEFYSSVLANGDIYKADYEGLYCV 214 (345)
Q Consensus 183 ~~~~~~~v~~~~~~L~~kG~iy~~~~~~~yc~ 214 (345)
+..+.+.+.+++++|.++|++|+.++..|...
T Consensus 170 Es~~~~~v~~vl~~L~e~g~~~~~dGa~~i~~ 201 (354)
T PF00750_consen 170 ESFYSGKVDEVLERLKEKGLLYESDGALWIDL 201 (354)
T ss_dssp HHHHTTHHHHHHHHHHCTTTEEEETTEEEEEG
T ss_pred hhhhhhHHHHHHHHHHhCCcEEecCCcEEEec
Confidence 77788899999999999999999887776643
No 65
>cd00802 class_I_aaRS_core catalytic core domain of class I amino acyl-tRNA synthetase. Class I amino acyl-tRNA synthetase (aaRS) catalytic core domain. These enzymes are mostly monomers which aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=99.67 E-value=2.6e-16 Score=134.61 Aligned_cols=77 Identities=25% Similarity=0.186 Sum_probs=74.8
Q ss_pred EEccCCCCCCcCchhHHHHHHHHHHHHHHHHHcCCeEEEEcCCCCcChHHHHHHHhCCCCHHHHHHHHHHHHHHHHh
Q 046127 93 LTTPLYYVNAPPHMGSAYTTIAADAIARFQRLLGKKVIFITGTDEHGEKIAAAAADGGSSPSEHCDVVSQAYKTLWK 169 (345)
Q Consensus 93 I~~~~PypnG~LHIGHar~~i~~DvlaR~lr~~G~~V~~v~G~D~~G~~I~~~A~~~g~~p~~~~~~~~~~~~~~l~ 169 (345)
|++++|||||++||||+|+++++|+++|++|++|++|.+++|+||+|.+|...|.+.+.+++++++.+.+.|+++++
T Consensus 1 ~~~~~p~~~~~~HlGh~~~~~~~d~~~r~lr~~G~~v~~~~~~dd~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 77 (143)
T cd00802 1 TTFSGITPNGYLHIGHLRTIVTFDFLAQAYRKLGYKVRCIALIDDAGGLIGDPANKKGENAKAFVERWIERIKEDVE 77 (143)
T ss_pred CEecCCCCCCCccHhHHHHHHHHHHHHHHHHHcCCCeEEEeeeCCCchHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999888
No 66
>PRK00750 lysK lysyl-tRNA synthetase; Reviewed
Probab=99.64 E-value=1.1e-16 Score=163.13 Aligned_cols=132 Identities=17% Similarity=0.193 Sum_probs=100.2
Q ss_pred CCEEEEccCCCCCCcCchhHHHHHHHHHHHHHHHHHcCCeEEEEcCCCCcC--------hHH-HHHHHhCCCC-------
Q 046127 89 DPFVLTTPLYYVNAPPHMGSAYTTIAADAIARFQRLLGKKVIFITGTDEHG--------EKI-AAAAADGGSS------- 152 (345)
Q Consensus 89 ~~~~I~~~~PypnG~LHIGHar~~i~~DvlaR~lr~~G~~V~~v~G~D~~G--------~~I-~~~A~~~g~~------- 152 (345)
+.++|++++ +|||.+||||++.++.+|+++|++|++|++|.+++|+|+|| .|. +..++..|.+
T Consensus 23 ~~~~~~~g~-~psG~~HiG~~~e~~~~d~v~r~lr~~G~~v~~i~~~Dd~d~lRkvp~~~p~~~~~~~~~G~pl~~~p~p 101 (510)
T PRK00750 23 PPVVVETGI-GPSGLPHIGNFREVARTDMVRRALRDLGIKTRLIFFSDDMDGLRKVPDNVPNQEMLEEYLGKPLTEIPDP 101 (510)
T ss_pred CcEEEEeCC-CCCCCcccccccchhhHHHHHHHHHHcCCcEEEEEEEecCCcccccCCCCCchHHHHHhcCcccccCCCC
Confidence 348888877 69999999999999999999999999999999999999997 333 2344444544
Q ss_pred ---HHHHHHHHHHHHHHHHhhcCcccCccccCCChhhHHHHHHHHHHHHhCCCeee------c--ccC-----cccccCC
Q 046127 153 ---PSEHCDVVSQAYKTLWKDLDIAYDKFIRTTEPKHEAIVKEFYSSVLANGDIYK------A--DYE-----GLYCVNC 216 (345)
Q Consensus 153 ---p~~~~~~~~~~~~~~l~~lgI~~D~f~~T~~~~~~~~v~~~~~~L~~kG~iy~------~--~~~-----~~yc~~c 216 (345)
++.+++++.+.+++.|+.+||++|.+..|.........+.+...|.+++.|.+ + ... ..+|++|
T Consensus 102 ~G~~~~~~~~~~~~~~~~~~~~gi~~d~~~~t~~y~~g~~~~~i~~~l~~~~~i~~il~~~~~~~~~~~~~P~~pic~~c 181 (510)
T PRK00750 102 FGCHESYAEHFNAPLREFLDRFGIEYEFISATECYKSGRYDEAILTALENRDEIMEILLPYLGEERQATYSPFLPICPKC 181 (510)
T ss_pred CCCchHHHHHHHHHHHHHHHHcCCceEEEehhhhhccCchHHHHHHHHHhHHHHHHHHHHhcCCccCCCeeeeeeeCCCC
Confidence 79999999999999999999999955544332333455555566666665542 1 122 3459999
Q ss_pred CCccc
Q 046127 217 EEYKD 221 (345)
Q Consensus 217 ~~~l~ 221 (345)
|..++
T Consensus 182 g~~~~ 186 (510)
T PRK00750 182 GKVLT 186 (510)
T ss_pred Cccce
Confidence 98875
No 67
>KOG0437 consensus Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=99.63 E-value=1.1e-15 Score=155.59 Aligned_cols=141 Identities=21% Similarity=0.298 Sum_probs=119.7
Q ss_pred CCCCCCEEEEccCCCCCCcCchhHHHHHHHHHHHHHHHHHcCCeEEEEcCCCCcChHHHHHHHhCC--------------
Q 046127 85 TEPADPFVLTTPLYYVNAPPHMGSAYTTIAADAIARFQRLLGKKVIFITGTDEHGEKIAAAAADGG-------------- 150 (345)
Q Consensus 85 ~~~~~~~~I~~~~PypnG~LHIGHar~~i~~DvlaR~lr~~G~~V~~v~G~D~~G~~I~~~A~~~g-------------- 150 (345)
..+.++|+++.|.||.||.||+||+.+..-.|+.+-|.|++|++|+|.+|+.|.|+||...|.+..
T Consensus 40 ~~~~~Kff~tfpyPYMNG~LHlGH~FslSK~eFa~~y~rL~Gk~vLfPfgFHCTGMPI~A~AdKLkrEie~fG~ppdf~~ 119 (1080)
T KOG0437|consen 40 QKSKPKFFVTFPYPYMNGRLHLGHAFSLSKVEFASGYERLQGKNVLFPFGFHCTGMPIKASADKLKREIELFGCPPDFPE 119 (1080)
T ss_pred ccccCceeEeccccccCceeeccceeehhhhHHHHHHHHhcCceEEeecccccCCCccHHhHHHHHHHHHHhCCCCCCch
Confidence 456799999999999999999999999999999999999999999999999999999988886421
Q ss_pred ----------------------------------------------C---------CHHHHHHHHHHHHHHHHhhcCccc
Q 046127 151 ----------------------------------------------S---------SPSEHCDVVSQAYKTLWKDLDIAY 175 (345)
Q Consensus 151 ----------------------------------------------~---------~p~~~~~~~~~~~~~~l~~lgI~~ 175 (345)
+ +|..|...+-..-.+++++||...
T Consensus 120 e~eeEv~eev~~~~~~~~~k~kgKKsk~aaK~g~~kYQw~IM~slGl~deEI~~F~d~~~WL~yFPpLc~~dlk~~gl~i 199 (1080)
T KOG0437|consen 120 EEEEEVEEEVKTEDAIEDVKFKGKKSKAAAKTGGQKYQWEIMESLGLPDEEIKKFADPKHWLYYFPPLCERDLKRFGLGI 199 (1080)
T ss_pred hhhhhhhhcccccccccccccccchhhHHHhhcccchhHHHHHHcCCCHHHhhcccChhHHHHhCChHHHHHHHHhCCCc
Confidence 0 111223333344567899999888
Q ss_pred C---ccccCC-ChhhHHHHHHHHHHHHhCCCeeecccCcccccCCCCccchhhh
Q 046127 176 D---KFIRTT-EPKHEAIVKEFYSSVLANGDIYKADYEGLYCVNCEEYKDEKEL 225 (345)
Q Consensus 176 D---~f~~T~-~~~~~~~v~~~~~~L~~kG~iy~~~~~~~yc~~c~~~l~d~el 225 (345)
| .|+.|. ++.|-..|+|.|.+|.+.|.|..+.+...|||.+++.+.|+|.
T Consensus 200 DWRRSFITTDvNpYyDsFVRWQ~n~L~~~gkI~fgkRyTIyspkDgQpCmDHDR 253 (1080)
T KOG0437|consen 200 DWRRSFITTDVNPYYDSFVRWQFNKLKEAGKIKFGKRYTIYSPKDGQPCMDHDR 253 (1080)
T ss_pred ceeeeeeecccchhHHHHHHHHHHHHHhcCCcccCcceeeecCCCCCccccccc
Confidence 8 577564 6888899999999999999999999999999999999999874
No 68
>KOG2007 consensus Cysteinyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=99.56 E-value=2.6e-14 Score=140.74 Aligned_cols=128 Identities=19% Similarity=0.250 Sum_probs=106.8
Q ss_pred CCCCEEEEccCCCCCCcCchhHHHHHHHHHHHHHHHH-HcCCeEEEEcCCCCcChHHHHHHH--hCCCCHHHHHH---HH
Q 046127 87 PADPFVLTTPLYYVNAPPHMGSAYTTIAADAIARFQR-LLGKKVIFITGTDEHGEKIAAAAA--DGGSSPSEHCD---VV 160 (345)
Q Consensus 87 ~~~~~~I~~~~PypnG~LHIGHar~~i~~DvlaR~lr-~~G~~V~~v~G~D~~G~~I~~~A~--~~g~~p~~~~~---~~ 160 (345)
++-++|+| .|++...-||||||+||..|++.|+++ ..||+|.|+.++.|.+++|..+|+ +.+..|..+.+ .+
T Consensus 54 ~~v~wY~C--GpTvYD~SHmGHArsYVsfDIlrRiL~dyfgy~V~~vmNiTDVDDKII~RAr~~~m~e~~~~l~~~F~~~ 131 (586)
T KOG2007|consen 54 NKVTWYIC--GPTVYDSSHMGHARSYVSFDILRRILRDYFGYDVTFVMNITDVDDKIIKRARKEEMGEKPLSLSERFCYY 131 (586)
T ss_pred CeEEEEEe--cCcccchhhhhhhhhhhhHHHHHHHHHHHcCcceEEEecccchhHHHHHHhhhhhhccchhhHHHHHHHH
Confidence 33455555 457779999999999999999999999 999999999999999999999997 24444544433 56
Q ss_pred HHHHHHHHhhcCccc-CccccCCChhhHHHHHHHHHHHHhCCCeeecccCcccccCCCC
Q 046127 161 SQAYKTLWKDLDIAY-DKFIRTTEPKHEAIVKEFYSSVLANGDIYKADYEGLYCVNCEE 218 (345)
Q Consensus 161 ~~~~~~~l~~lgI~~-D~f~~T~~~~~~~~v~~~~~~L~~kG~iy~~~~~~~yc~~c~~ 218 (345)
.++|.++|.+|++.. |...|.+ +|...+..++++++++|+.|..++.+||++.--.
T Consensus 132 e~eF~~DM~~LnvLpPtv~tRVS--eyvp~II~fIqkIIdnG~aY~~dGsVYFdv~kf~ 188 (586)
T KOG2007|consen 132 EEEFLQDMAALNVLPPTVQTRVS--EYVPQIIKFIQKIIDNGYAYAVDGSVYFDVDKFP 188 (586)
T ss_pred HHHHHHHHHHhCCCCCcccchhh--hchHHHHHHHHHHHhCCceeeeCCcEEEeccccc
Confidence 799999999999975 5655544 7999999999999999999999999999876544
No 69
>TIGR00467 lysS_arch lysyl-tRNA synthetase, archaeal and spirochete. This model represents the lysyl-tRNA synthetases that are class I amino-acyl tRNA synthetases. It includes archaeal and spirochete examples of the enzyme. All other known examples are class IIc amino-acyl tRNA synthetases and seem to form a separate orthologous set.
Probab=99.47 E-value=5.2e-14 Score=143.21 Aligned_cols=88 Identities=20% Similarity=0.229 Sum_probs=82.5
Q ss_pred CCEEEEccCCCCCCcCchhHHHHHHHHHHHHHHHHHcCCeEEEEcCCCCc------------------ChHHHHHHHhCC
Q 046127 89 DPFVLTTPLYYVNAPPHMGSAYTTIAADAIARFQRLLGKKVIFITGTDEH------------------GEKIAAAAADGG 150 (345)
Q Consensus 89 ~~~~I~~~~PypnG~LHIGHar~~i~~DvlaR~lr~~G~~V~~v~G~D~~------------------G~~I~~~A~~~g 150 (345)
++++|+++.+ |||.+||||++..+.+|+++|++|++|++|.+++++|+| |.|+...+...|
T Consensus 18 ~~~~~~tg~~-psG~~HiG~~~e~~~~d~v~r~~r~~g~~~~~i~~~Dd~D~lRKvp~~~p~~~~~ylG~Pl~~vpdp~g 96 (515)
T TIGR00467 18 NLYTVASGIT-PSGHIHIGNFREVITADAIARALRDSGSEARFIYIADNYDPLRKVYPFLPEELETYLGMPLTRIPDPEG 96 (515)
T ss_pred CeEEEecCCC-CCCCccccchhhhhHHHHHHHHHHHcCCCEEEEEEEcCCcccccccccccHHHHHhCCCcceecCCCCC
Confidence 4799999987 999999999999999999999999999999999999999 999988888888
Q ss_pred CCHHHHHHHHHHHHHHHHhhcCcccCcc
Q 046127 151 SSPSEHCDVVSQAYKTLWKDLDIAYDKF 178 (345)
Q Consensus 151 ~~p~~~~~~~~~~~~~~l~~lgI~~D~f 178 (345)
.. +.+++++...+.+.|+.|||+++..
T Consensus 97 ~~-~s~~~h~~~~~~~~l~~~gi~~e~~ 123 (515)
T TIGR00467 97 CK-TSYAEHFLIPFLESLPVLGINPEFI 123 (515)
T ss_pred Cc-HHHHHHHHHHHHHHHHHcCCeEEEE
Confidence 86 8999999999999999999998743
No 70
>cd09287 GluRS_non_core catalytic core domain of non-discriminating glutamyl-tRNA synthetase. Non-discriminating Glutamyl-tRNA synthetase (GluRS) cataytic core domain. These enzymes attach Glu to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea and most bacteria lack GlnRS. In these organisms, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme.
Probab=99.17 E-value=6.7e-11 Score=109.36 Aligned_cols=96 Identities=17% Similarity=0.175 Sum_probs=78.1
Q ss_pred EEEccCCCCCCcCchhHHHHHHHHHHHHHHHHHcCCeEEEEcCCCCcChHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhc
Q 046127 92 VLTTPLYYVNAPPHMGSAYTTIAADAIARFQRLLGKKVIFITGTDEHGEKIAAAAADGGSSPSEHCDVVSQAYKTLWKDL 171 (345)
Q Consensus 92 ~I~~~~PypnG~LHIGHar~~i~~DvlaR~lr~~G~~V~~v~G~D~~G~~I~~~A~~~g~~p~~~~~~~~~~~~~~l~~l 171 (345)
+++...|+|||+|||||++++++.+.++| ++++.++..+||.+.+.. .......+.|.++|++|
T Consensus 2 v~~RfaPsPtG~lHiG~~rtal~~~l~Ar-----~~~G~~ilRieDtD~~r~-----------~~~~~~~~~i~~dL~wL 65 (240)
T cd09287 2 VVMRFAPNPNGPLHLGHARAAILNGEYAK-----MYGGKFILRFDDTDPRTK-----------RPDPEAYDMIPEDLEWL 65 (240)
T ss_pred ceEeCCCCCCCCccHHHHHHHHHHHHHHH-----HcCCEEEEeeCcCCCCcc-----------cchHHHHHHHHHHHHHc
Confidence 35677899999999999999999999999 578888888888875542 12333455699999999
Q ss_pred CcccCccccCCChhhHHHHHHHHHHHHhCCCeee
Q 046127 172 DIAYDKFIRTTEPKHEAIVKEFYSSVLANGDIYK 205 (345)
Q Consensus 172 gI~~D~f~~T~~~~~~~~v~~~~~~L~~kG~iy~ 205 (345)
|+.+|..++.+ .+.+...+..++|.++|.+|.
T Consensus 66 Gl~~d~~~~qS--~r~~~y~~~~~~Li~~G~aY~ 97 (240)
T cd09287 66 GVKWDEVVIAS--DRIELYYEYARKLIEMGGAYV 97 (240)
T ss_pred CCCCCCccchh--ccHHHHHHHHHHHHHcCCccc
Confidence 99999654444 578888889999999999996
No 71
>PRK04156 gltX glutamyl-tRNA synthetase; Provisional
Probab=99.03 E-value=7e-10 Score=113.85 Aligned_cols=97 Identities=18% Similarity=0.161 Sum_probs=78.8
Q ss_pred EEEEccCCCCCCcCchhHHHHHHHHHHHHHHHHHcCCeEEEEcCCCCcChHHHHHHHhCCCCHHHHHHHHHHHHHHHHhh
Q 046127 91 FVLTTPLYYVNAPPHMGSAYTTIAADAIARFQRLLGKKVIFITGTDEHGEKIAAAAADGGSSPSEHCDVVSQAYKTLWKD 170 (345)
Q Consensus 91 ~~I~~~~PypnG~LHIGHar~~i~~DvlaR~lr~~G~~V~~v~G~D~~G~~I~~~A~~~g~~p~~~~~~~~~~~~~~l~~ 170 (345)
-+++.-+|+|||+|||||+|++++.+.+|| +|...++.-+||.+.+|.. ....+.+.|.++|++
T Consensus 101 ~V~tRFaPsPtG~LHIGharaalln~~~Ar-----~~~G~~iLRidDTDpk~~R-----------~~~e~~~~I~edL~w 164 (567)
T PRK04156 101 KVVMRFAPNPSGPLHLGHARAAILNDEYAK-----MYGGKFILRFEDTDPRTKR-----------PDPEAYDMILEDLKW 164 (567)
T ss_pred eEEEEeCCCCCCCccHHHHHHHHHHHHHHH-----HcCCEEEEeEccCCCCccc-----------chHHHHHHHHHHHHH
Confidence 367778999999999999999999999999 3666777777777654411 233456899999999
Q ss_pred cCcccCccccCCChhhHHHHHHHHHHHHhCCCeee
Q 046127 171 LDIAYDKFIRTTEPKHEAIVKEFYSSVLANGDIYK 205 (345)
Q Consensus 171 lgI~~D~f~~T~~~~~~~~v~~~~~~L~~kG~iy~ 205 (345)
||+.+|..++.+ .+.+...+...+|.++|.+|.
T Consensus 165 LGl~wD~~~~qS--dr~~~y~~~a~~Li~~G~AY~ 197 (567)
T PRK04156 165 LGVKWDEVVIQS--DRLEIYYEYARKLIEMGGAYV 197 (567)
T ss_pred cCCCCCCccCcc--cCHHHHHHHHHHHHHcCCCcc
Confidence 999999765555 578888899999999999995
No 72
>KOG4426 consensus Arginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=98.97 E-value=2.2e-09 Score=104.72 Aligned_cols=188 Identities=16% Similarity=0.174 Sum_probs=136.6
Q ss_pred HHHHHHHHHHHhhchhcchhhccccccccc-ccccccccccccccccccccccccccCCCCCCCCCCCCCEEEEccCCCC
Q 046127 22 QKEFEEMAARINYSIQNSLWLLNPLHSKAT-THFRNRLKFRQNLFSLSKGAVFCSYATNTDKSGTEPADPFVLTTPLYYV 100 (345)
Q Consensus 22 ~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~Pyp 100 (345)
+|+=+.||++|.-++-+++++ ++. -+=+|.+|-.++.....+....-+.++-. .+.-..++++|...+||.
T Consensus 128 ~~~P~~va~~l~~~lP~se~v------Ek~~iagpGFiNv~Ls~d~~~~~i~nll~~GV~--~P~l~~KrvlVDFSSPNI 199 (656)
T KOG4426|consen 128 NKRPRDVAQELQKHLPTSEMV------EKCEIAGPGFINVFLSKDYMSKQISNLLVNGVK--LPTLSVKRVLVDFSSPNI 199 (656)
T ss_pred ccCcHHHHHHHHhhCCchhhh------hhhcccCCceEEEEechHHHHHHHHHHHHcCCC--CcccceeeEEEecCCCcH
Confidence 333445999999999888877 322 23445555544443333333333333322 233456999999999999
Q ss_pred CCcCchhHHHHHHHHHHHHHHHHHcCCeEEEEcCCCCcChH----HHHHHHh----------------------------
Q 046127 101 NAPPHMGSAYTTIAADAIARFQRLLGKKVIFITGTDEHGEK----IAAAAAD---------------------------- 148 (345)
Q Consensus 101 nG~LHIGHar~~i~~DvlaR~lr~~G~~V~~v~G~D~~G~~----I~~~A~~---------------------------- 148 (345)
-..+|+||.|..|++|.++|.+...|++|+.+..+-|.|+. |+..-++
T Consensus 200 AKeMHVGHLRSTIIGdsl~RllE~~~~dVlR~NHvGDWGTQFGMLIahL~dkFPd~l~vsp~IgDLQvFYkeSKkrFD~d 279 (656)
T KOG4426|consen 200 AKEMHVGHLRSTIIGDSLCRLLEFSGVDVLRRNHVGDWGTQFGMLIAHLFDKFPDYLSVSPPIGDLQVFYKESKKRFDED 279 (656)
T ss_pred HHHhhhhhhhhhhHhHHHHHHHHhcCcceEeeccccchHHHHHHHHHHHHHhCCchhccCCCchhHHHHHHHHHhccCcC
Confidence 99999999999999999999999999999999988887765 3322221
Q ss_pred --------------CCCCH------HHHHHHHHHHHHHHHhhcCcccCccccCCChhhHHHHHHHHHHHHhCCCeeeccc
Q 046127 149 --------------GGSSP------SEHCDVVSQAYKTLWKDLDIAYDKFIRTTEPKHEAIVKEFYSSVLANGDIYKADY 208 (345)
Q Consensus 149 --------------~g~~p------~~~~~~~~~~~~~~l~~lgI~~D~f~~T~~~~~~~~v~~~~~~L~~kG~iy~~~~ 208 (345)
+|-+| ..+|+-..+++...+++|.|+...- .++.|...+.++++.|..+|++.+.++
T Consensus 280 eeFKkrAyq~VV~LQggdp~~~kAW~~ICdvSr~ef~kvY~rLdi~l~e~---GESFYq~~m~~vveel~~kglvee~~G 356 (656)
T KOG4426|consen 280 EEFKKRAYQAVVRLQGGDPDIRKAWALICDVSRKEFQKVYNRLDISLKER---GESFYQDRMAEVVEELKSKGLVEEDDG 356 (656)
T ss_pred HHHHHHHHHHeeecccCCChHHHHHHHHHHhhHHHHHHHHHHhcchHhhc---chhhhhhHHHHHHHHHhcCCceeecCC
Confidence 11122 2578888999999999999997532 355788999999999999999998886
Q ss_pred -CcccccCCCCcc
Q 046127 209 -EGLYCVNCEEYK 220 (345)
Q Consensus 209 -~~~yc~~c~~~l 220 (345)
.+.|-+.|+-.|
T Consensus 357 r~i~f~~g~~IPL 369 (656)
T KOG4426|consen 357 RRIMFPEGCDIPL 369 (656)
T ss_pred ceEeccCCCCcce
Confidence 477777787655
No 73
>TIGR00463 gltX_arch glutamyl-tRNA synthetase, archaeal and eukaryotic family. The glutamyl-tRNA synthetases of the eukaryotic cytosol and of the Archaea are more similar to glutaminyl-tRNA synthetases than to bacterial glutamyl-tRNA synthetases. This alignment models just the eukaryotic cytosolic and archaeal forms of the enzyme. In some eukaryotes, the glutamyl-tRNA synthetase is part of a longer, multifunctional aminoacyl-tRNA ligase. In many species, the charging of tRNA(gln) proceeds first through misacylation with Glu and then transamidation. For this reason, glutamyl-tRNA synthetases may act on both tRNA(gln) and tRNA(glu).
Probab=98.93 E-value=3.1e-09 Score=109.02 Aligned_cols=96 Identities=15% Similarity=0.118 Sum_probs=78.1
Q ss_pred CEEEEccCCCCCCcCchhHHHHHHHHHHHHHHHHHcCCeEEEEcCCCCcChHHHHHHHhCCCCHHHHHHHHHHHHHHHHh
Q 046127 90 PFVLTTPLYYVNAPPHMGSAYTTIAADAIARFQRLLGKKVIFITGTDEHGEKIAAAAADGGSSPSEHCDVVSQAYKTLWK 169 (345)
Q Consensus 90 ~~~I~~~~PypnG~LHIGHar~~i~~DvlaR~lr~~G~~V~~v~G~D~~G~~I~~~A~~~g~~p~~~~~~~~~~~~~~l~ 169 (345)
.-+++.-+|.|||+|||||++++++.+.+|| . |+..++.-+||.+.. .-..++.+.|.++|+
T Consensus 92 ~~vvtRFaPsPtG~LHiGharaalln~~~Ar--~---~~G~~iLRidDTDp~-------------R~~~e~~~~I~edL~ 153 (560)
T TIGR00463 92 GEVVMRFAPNPSGPLHIGHARAAILNQYFAK--K---YKGKLIIRFDDTDPR-------------RVKPEAYDMILEDLD 153 (560)
T ss_pred CeeEEEeCCCCCCCccHHHHHHHHHHHHHHH--h---cCCEEEEEeCcCCcc-------------cccHHHHHHHHHHHH
Confidence 4488999999999999999999999999997 2 445566666666532 123347889999999
Q ss_pred hcCcccCccccCCChhhHHHHHHHHHHHHhCCCeee
Q 046127 170 DLDIAYDKFIRTTEPKHEAIVKEFYSSVLANGDIYK 205 (345)
Q Consensus 170 ~lgI~~D~f~~T~~~~~~~~v~~~~~~L~~kG~iy~ 205 (345)
.||+.+|..++++ .|.+...+...+|.++|.+|.
T Consensus 154 wLGi~~d~~~~qS--d~~~~y~~~a~~Li~~G~AY~ 187 (560)
T TIGR00463 154 WLGVKGDEVVYQS--DRIEEYYDYCRKLIEMGKAYV 187 (560)
T ss_pred HcCCCCCcccccc--ccHHHHHHHHHHHHHcCCcee
Confidence 9999999776555 578889999999999999995
No 74
>PRK12558 glutamyl-tRNA synthetase; Provisional
Probab=98.89 E-value=6.4e-09 Score=104.25 Aligned_cols=94 Identities=24% Similarity=0.212 Sum_probs=74.2
Q ss_pred EEEccCCCCCCcCchhHHHHHHHHHHHHHHHHHcCCeEEEEcCCCCcChHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhc
Q 046127 92 VLTTPLYYVNAPPHMGSAYTTIAADAIARFQRLLGKKVIFITGTDEHGEKIAAAAADGGSSPSEHCDVVSQAYKTLWKDL 171 (345)
Q Consensus 92 ~I~~~~PypnG~LHIGHar~~i~~DvlaR~lr~~G~~V~~v~G~D~~G~~I~~~A~~~g~~p~~~~~~~~~~~~~~l~~l 171 (345)
+++.-.|.|||+|||||+|+++....+|| ...|. |+.-++|.+ ++...+.+.+.|+++|++|
T Consensus 3 vr~RFAPSPTG~lHiG~artAL~n~l~Ar--~~gG~---fiLRIEDTD-------------~~Rs~~~~~~~I~e~L~wL 64 (445)
T PRK12558 3 VITRFAPSPTGYLHVGNARTALLNWLYAR--KHGGK---FILRIDDTD-------------LERSKQEYADAIAEDLKWL 64 (445)
T ss_pred eeEEeCCCCCCcccHHHHHHHHHHHHHHH--HhCCE---EEEEeccCC-------------cccchHHHHHHHHHHHHHc
Confidence 46677889999999999999998888888 44454 444455443 2334477899999999999
Q ss_pred CcccCccccCCChhhHHHHHHHHHHHHhCCCeee
Q 046127 172 DIAYDKFIRTTEPKHEAIVKEFYSSVLANGDIYK 205 (345)
Q Consensus 172 gI~~D~f~~T~~~~~~~~v~~~~~~L~~kG~iy~ 205 (345)
||.+|.+++.+ ...+.+.+++++|.++|++|+
T Consensus 65 GI~~De~y~QS--er~~~y~~~~e~L~e~G~AY~ 96 (445)
T PRK12558 65 GINWDRTFRQS--DRFDRYDEAAEKLKAAGRLYP 96 (445)
T ss_pred CCCCCccccHH--HHHHHHHHHHHHHHHCCCEEE
Confidence 99999876655 345688999999999999994
No 75
>cd00807 GlnRS_core catalytic core domain of glutaminyl-tRNA synthetase. Glutaminyl-tRNA synthetase (GlnRS) cataytic core domain. These enzymes attach Gln to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. GlnRS contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea and most bacteria lack GlnRS. In these organisms, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme.
Probab=98.86 E-value=7.2e-09 Score=95.69 Aligned_cols=94 Identities=19% Similarity=0.134 Sum_probs=73.8
Q ss_pred EEEccCCCCCCcCchhHHHHHHHHHHHHHHHHHcCCeEEEEcCCCCcChHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhc
Q 046127 92 VLTTPLYYVNAPPHMGSAYTTIAADAIARFQRLLGKKVIFITGTDEHGEKIAAAAADGGSSPSEHCDVVSQAYKTLWKDL 171 (345)
Q Consensus 92 ~I~~~~PypnG~LHIGHar~~i~~DvlaR~lr~~G~~V~~v~G~D~~G~~I~~~A~~~g~~p~~~~~~~~~~~~~~l~~l 171 (345)
+++.-.|.|||+|||||++++++...+|| ...|.=+++ +||.+ +........+.|.++|+.|
T Consensus 2 v~~RFAPsPtG~lHlG~~~~al~~~l~Ar--~~~G~~iLR---ieDtD-------------~~R~~~~~~~~I~~dL~wl 63 (238)
T cd00807 2 VVTRFPPEPNGYLHIGHAKAILLNFGYAK--KYGGRCNLR---FDDTN-------------PEKEEEEYVDSIKEDVKWL 63 (238)
T ss_pred ceEecCCCCCCcccHHHHHHHHHHHHHHH--HhCCEEEEE---ecCCC-------------CcccchHHHHHHHHHHHHc
Confidence 46777899999999999999999999999 456654443 44432 3334556789999999999
Q ss_pred CcccCccccCCChhhHHHHHHHHHHHHhCCCeee
Q 046127 172 DIAYDKFIRTTEPKHEAIVKEFYSSVLANGDIYK 205 (345)
Q Consensus 172 gI~~D~f~~T~~~~~~~~v~~~~~~L~~kG~iy~ 205 (345)
|+.+|..+. .+.+.+.-++...+|.++|.+|.
T Consensus 64 Gl~wD~~~~--QS~r~~~Y~~~~~~L~~~g~aY~ 95 (238)
T cd00807 64 GIKPYKVTY--ASDYFDQLYEYAEQLIKKGKAYV 95 (238)
T ss_pred CCCCCCcee--cccCHHHHHHHHHHHHHcCCeec
Confidence 999994433 33567788889999999999998
No 76
>PLN03233 putative glutamate-tRNA ligase; Provisional
Probab=98.84 E-value=1.1e-08 Score=104.13 Aligned_cols=96 Identities=18% Similarity=0.170 Sum_probs=76.9
Q ss_pred CEEEEccCCCCCCcCchhHHHHHHHHHHHHHHHHHcCCeEEEEcCCCCcChHHHHHHHhCCCCHHHHHHHHHHHHHHHHh
Q 046127 90 PFVLTTPLYYVNAPPHMGSAYTTIAADAIARFQRLLGKKVIFITGTDEHGEKIAAAAADGGSSPSEHCDVVSQAYKTLWK 169 (345)
Q Consensus 90 ~~~I~~~~PypnG~LHIGHar~~i~~DvlaR~lr~~G~~V~~v~G~D~~G~~I~~~A~~~g~~p~~~~~~~~~~~~~~l~ 169 (345)
.-+++.-+|.|||+|||||++++++...+|| ...|.-+++ +||.+ |..-..++.+.|.++|+
T Consensus 10 g~v~tRFAPsPtG~LHiGharaAlln~l~Ar--~~gG~~iLR---iEDTD-------------p~R~~~e~~~~I~~dL~ 71 (523)
T PLN03233 10 GQIVTRFPPEPSGYLHIGHAKAALLNDYYAR--RYKGRLILR---FDDTN-------------PSKEKAEFEESIIEDLG 71 (523)
T ss_pred CeEEEeeCCCCCCcccHHHHHHHHHHHHHHH--HhCCEEEEE---ECCCC-------------CCccchHHHHHHHHHHH
Confidence 3478899999999999999999999999999 455654444 44443 33345568899999999
Q ss_pred hcCcccCccccCCChhhHHHHHHHHHHHHhCCCeee
Q 046127 170 DLDIAYDKFIRTTEPKHEAIVKEFYSSVLANGDIYK 205 (345)
Q Consensus 170 ~lgI~~D~f~~T~~~~~~~~v~~~~~~L~~kG~iy~ 205 (345)
.||+.+|..+.++ .+.+...+...+|.++|.+|.
T Consensus 72 WLGl~wD~~~~qS--dr~~~y~~~a~~Li~~G~AY~ 105 (523)
T PLN03233 72 KIEIKPDSVSFTS--DYFEPIRCYAIILIEEGLAYM 105 (523)
T ss_pred HhCCCCCCCcccc--ccHHHHHHHHHHHHHcCCeEe
Confidence 9999999665444 577888889999999999995
No 77
>PTZ00402 glutamyl-tRNA synthetase; Provisional
Probab=98.79 E-value=2e-08 Score=103.29 Aligned_cols=95 Identities=20% Similarity=0.193 Sum_probs=75.5
Q ss_pred CEEEEccCCCCCCcCchhHHHHHHHHHHHHHHHHHcCCeEEEEcCCCCcChHHHHHHHhCCCCHHHHHHHHHHHHHHHHh
Q 046127 90 PFVLTTPLYYVNAPPHMGSAYTTIAADAIARFQRLLGKKVIFITGTDEHGEKIAAAAADGGSSPSEHCDVVSQAYKTLWK 169 (345)
Q Consensus 90 ~~~I~~~~PypnG~LHIGHar~~i~~DvlaR~lr~~G~~V~~v~G~D~~G~~I~~~A~~~g~~p~~~~~~~~~~~~~~l~ 169 (345)
.-+++.-+|.|||+|||||++++++...+|| ...|.-+++ +||. +|.....++.+.|.++|+
T Consensus 51 ~~v~tRFAPsPtGyLHIGharaAllN~l~Ar--~~gG~~iLR---iEDT-------------Dp~R~~~e~~d~IleDL~ 112 (601)
T PTZ00402 51 GKVVTRFPPEASGFLHIGHAKAALINSMLAD--KYKGKLVFR---FDDT-------------NPSKEKEHFEQAILDDLA 112 (601)
T ss_pred CeeEEeeCCCCCCcccHHHHHHHHHHHHHHH--HhCCEEEEE---EcCC-------------CCcccCHHHHHHHHHHHH
Confidence 3478899999999999999999999999999 456654443 4443 233345678999999999
Q ss_pred hcCcccCc-cccCCChhhHHHHHHHHHHHHhCCCee
Q 046127 170 DLDIAYDK-FIRTTEPKHEAIVKEFYSSVLANGDIY 204 (345)
Q Consensus 170 ~lgI~~D~-f~~T~~~~~~~~v~~~~~~L~~kG~iy 204 (345)
.||+.+|. .+..+ .+.+...+...+|.++|.+|
T Consensus 113 WLGl~wDe~~~~QS--dr~d~y~e~a~~Li~~G~AY 146 (601)
T PTZ00402 113 TLGVSWDVGPTYSS--DYMDLMYEKAEELIKKGLAY 146 (601)
T ss_pred HCCCCCCCceeecc--ccHHHHHHHHHHHHHcCCEE
Confidence 99999995 33344 57788888999999999999
No 78
>COG0008 GlnS Glutamyl- and glutaminyl-tRNA synthetases [Translation, ribosomal structure and biogenesis]
Probab=98.77 E-value=1.4e-08 Score=102.39 Aligned_cols=94 Identities=22% Similarity=0.217 Sum_probs=75.7
Q ss_pred EEEccCCCCCCcCchhHHHHHHHHHHHHHHHHHcCCeEEEEcCCCCcChHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhc
Q 046127 92 VLTTPLYYVNAPPHMGSAYTTIAADAIARFQRLLGKKVIFITGTDEHGEKIAAAAADGGSSPSEHCDVVSQAYKTLWKDL 171 (345)
Q Consensus 92 ~I~~~~PypnG~LHIGHar~~i~~DvlaR~lr~~G~~V~~v~G~D~~G~~I~~~A~~~g~~p~~~~~~~~~~~~~~l~~l 171 (345)
+++.-+|.|||+|||||+|+++.-..+|| ...|.=++++=-+| |+.-..++.+.|.++|+.|
T Consensus 10 v~tRFAPsPtG~LHiG~artAl~N~~~Ar--~~~G~fiLRiEDTD----------------~~R~~~e~~~~I~~~L~WL 71 (472)
T COG0008 10 VRTRFAPSPTGYLHIGHARTALLNYLYAR--KYGGKFILRIEDTD----------------PERETPEAEDAILEDLEWL 71 (472)
T ss_pred eEEEECcCCCCccchHHHHHHHHHHHHHH--HhCCEEEEEecCCC----------------CCCCCHHHHHHHHHHHHhc
Confidence 88889999999999999999999999999 56676665544333 2233445788999999999
Q ss_pred CcccCc-cccCCChhhHHHHHHHHHHHHhCCCeee
Q 046127 172 DIAYDK-FIRTTEPKHEAIVKEFYSSVLANGDIYK 205 (345)
Q Consensus 172 gI~~D~-f~~T~~~~~~~~v~~~~~~L~~kG~iy~ 205 (345)
|+.+|. .++.+ .+.+.-.+...+|+++|.+|.
T Consensus 72 Gl~wde~~~~QS--~r~~~Y~~~~~~Li~~G~AY~ 104 (472)
T COG0008 72 GLDWDEGPYYQS--ERFDIYYEYAEKLIEKGKAYV 104 (472)
T ss_pred CCCCCCceeehh--hhHHHHHHHHHHHHHCCCeEE
Confidence 999996 44444 577888889999999999994
No 79
>TIGR03838 queuosine_YadB glutamyl-queuosine tRNA(Asp) synthetase. This protein resembles a shortened glutamyl-tRNA ligase, but its purpose is to modify tRNA(Asp) at a queuosine position in the anticodon rather than to charge a tRNA with its cognate amino acid.
Probab=98.77 E-value=1.3e-08 Score=96.08 Aligned_cols=93 Identities=16% Similarity=0.161 Sum_probs=71.2
Q ss_pred EEccCCCCCCcCchhHHHHHHHHHHHHHHHHHcCCeEEEEcCCCCcChHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhcC
Q 046127 93 LTTPLYYVNAPPHMGSAYTTIAADAIARFQRLLGKKVIFITGTDEHGEKIAAAAADGGSSPSEHCDVVSQAYKTLWKDLD 172 (345)
Q Consensus 93 I~~~~PypnG~LHIGHar~~i~~DvlaR~lr~~G~~V~~v~G~D~~G~~I~~~A~~~g~~p~~~~~~~~~~~~~~l~~lg 172 (345)
++.-.|.|||.|||||+|++++...+|| +..|.=++.+=-+|. ......+.+.|.++|+.||
T Consensus 2 ~~RFAPSPtG~lHiG~~rtAL~n~l~Ar--~~gG~~iLRiEDtD~----------------~R~~~~~~~~I~~dL~wLG 63 (272)
T TIGR03838 2 RGRFAPSPSGPLHFGSLVAALGSYLDAR--AHGGRWLVRIEDLDP----------------PREVPGAADDILRTLEAYG 63 (272)
T ss_pred eeeeCCCCCCcccHHHHHHHHHHHHHHH--HhCCEEEEEeCcCCC----------------CCCChHHHHHHHHHHHHcC
Confidence 4566789999999999999999999999 556665554443331 1233457889999999999
Q ss_pred cccCcc-ccCCChhhHHHHHHHHHHHHhCCCeee
Q 046127 173 IAYDKF-IRTTEPKHEAIVKEFYSSVLANGDIYK 205 (345)
Q Consensus 173 I~~D~f-~~T~~~~~~~~v~~~~~~L~~kG~iy~ 205 (345)
|.+|.- +..+ .+.+.-.+.+++|.++|.+|.
T Consensus 64 l~wDe~~~~QS--~r~~~Y~~~~~~L~~~G~aY~ 95 (272)
T TIGR03838 64 LHWDGEVVYQS--QRHALYQAALDRLLAAGLAYP 95 (272)
T ss_pred CCCCCCeeeee--CCHHHHHHHHHHHHHcCCEEe
Confidence 999943 2333 566788888999999999993
No 80
>PTZ00437 glutaminyl-tRNA synthetase; Provisional
Probab=98.75 E-value=2.5e-08 Score=101.91 Aligned_cols=94 Identities=19% Similarity=0.082 Sum_probs=73.2
Q ss_pred EEEccCCCCCCcCchhHHHHHHHHHHHHHHHHHcCCeEEEEcCCCCcChHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhc
Q 046127 92 VLTTPLYYVNAPPHMGSAYTTIAADAIARFQRLLGKKVIFITGTDEHGEKIAAAAADGGSSPSEHCDVVSQAYKTLWKDL 171 (345)
Q Consensus 92 ~I~~~~PypnG~LHIGHar~~i~~DvlaR~lr~~G~~V~~v~G~D~~G~~I~~~A~~~g~~p~~~~~~~~~~~~~~l~~l 171 (345)
+++.-+|.|||+|||||++.+++...+|| +..|.-+++ +||.+ |......+.+.|.++|+.|
T Consensus 52 v~tRFaPsPtG~LHiGharaalln~~~Ar--~~gG~~iLR---iEDTD-------------p~r~~~e~~~~I~~dL~wL 113 (574)
T PTZ00437 52 PYFRFPPEPNGFLHIGHAKSMNLNFGSAR--AHGGKCYLR---YDDTN-------------PETEEQVYIDAIMEMVKWM 113 (574)
T ss_pred EEEEeCCCCCCcccHHHHHHHHHHHHHHH--HhCCEEEEE---ECCCC-------------ccccChHHHHHHHHHHHHc
Confidence 56788889999999999999999999999 455554443 44432 3335567899999999999
Q ss_pred CcccCccccCCChhhHHHHHHHHHHHHhCCCeee
Q 046127 172 DIAYDKFIRTTEPKHEAIVKEFYSSVLANGDIYK 205 (345)
Q Consensus 172 gI~~D~f~~T~~~~~~~~v~~~~~~L~~kG~iy~ 205 (345)
|+.+|..+.++ .|.+...+...+|+++|.+|.
T Consensus 114 Gi~~D~~~~qS--~y~~~~ye~A~~Li~~G~AY~ 145 (574)
T PTZ00437 114 GWKPDWVTFSS--DYFDQLHEFAVQLIKDGKAYV 145 (574)
T ss_pred CCCCCCCCcCc--hhHHHHHHHHHHHHHcCCEEE
Confidence 99999665443 566666677889999999995
No 81
>PLN02907 glutamate-tRNA ligase
Probab=98.75 E-value=2.3e-08 Score=105.95 Aligned_cols=97 Identities=23% Similarity=0.244 Sum_probs=77.5
Q ss_pred CCEEEEccCCCCCCcCchhHHHHHHHHHHHHHHHHHcCCeEEEEcCCCCcChHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Q 046127 89 DPFVLTTPLYYVNAPPHMGSAYTTIAADAIARFQRLLGKKVIFITGTDEHGEKIAAAAADGGSSPSEHCDVVSQAYKTLW 168 (345)
Q Consensus 89 ~~~~I~~~~PypnG~LHIGHar~~i~~DvlaR~lr~~G~~V~~v~G~D~~G~~I~~~A~~~g~~p~~~~~~~~~~~~~~l 168 (345)
..-+++.-+|.|||.|||||++++++...+|| +..|.-+++ +||.+ |..-..++.+.|.++|
T Consensus 211 ~~~v~tRFaPsPtG~LHiG~ar~al~n~~~Ar--~~~G~~iLR---~eDTd-------------p~r~~~e~~~~I~~dl 272 (722)
T PLN02907 211 EGKVCTRFPPEPSGYLHIGHAKAALLNQYFAR--RYKGKLIVR---FDDTN-------------PSKESDEFVENILKDI 272 (722)
T ss_pred CCceEEeeCCCCCCcccHHHHHHHHHHHHHHH--HhCCEEEEE---ecCCC-------------CCcCChHHHHHHHHHH
Confidence 34578999999999999999999999999999 556654443 44443 2333456889999999
Q ss_pred hhcCcccCccccCCChhhHHHHHHHHHHHHhCCCeee
Q 046127 169 KDLDIAYDKFIRTTEPKHEAIVKEFYSSVLANGDIYK 205 (345)
Q Consensus 169 ~~lgI~~D~f~~T~~~~~~~~v~~~~~~L~~kG~iy~ 205 (345)
+.||+.+|..+.++ .+.+...+...+|+++|.+|.
T Consensus 273 ~wLG~~~d~~~~qS--~r~~~y~~~a~~Li~~G~aY~ 307 (722)
T PLN02907 273 ETLGIKYDAVTYTS--DYFPQLMEMAEKLIKEGKAYV 307 (722)
T ss_pred HHcCCCCCCccccc--ccHHHHHHHHHHHHHcCCeee
Confidence 99999999765555 577888899999999999995
No 82
>PF00749 tRNA-synt_1c: tRNA synthetases class I (E and Q), catalytic domain; InterPro: IPR020058 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Glutamyl-tRNA synthetase (6.1.1.17 from EC) is a class Ic synthetase and shows several similarities with glutaminyl-tRNA synthetase concerning structure and catalytic properties. It is an alpha2 dimer. To date one crystal structure of a glutamyl-tRNA synthetase (Thermus thermophilus) has been solved. The molecule has the form of a bent cylinder and consists of four domains. The N-terminal half (domains 1 and 2) contains the 'Rossman fold' typical for class I synthetases and resembles the corresponding part of Escherichia coli GlnRS, whereas the C-terminal half exhibits a GluRS-specific structure []. ; GO: 0000166 nucleotide binding, 0005524 ATP binding, 0016876 ligase activity, forming aminoacyl-tRNA and related compounds, 0043039 tRNA aminoacylation, 0005737 cytoplasm; PDB: 2HZ7_A 2CFO_A 4A91_A 1NZJ_A 1N78_A 1G59_C 2CV2_A 2CV1_A 2CV0_B 1GLN_A ....
Probab=98.72 E-value=3.1e-08 Score=95.68 Aligned_cols=94 Identities=21% Similarity=0.161 Sum_probs=66.5
Q ss_pred EEEccCCCCCCcCchhHHHHHHHHHHHHHHHHHcCCeEEEEcCCCCcChHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhc
Q 046127 92 VLTTPLYYVNAPPHMGSAYTTIAADAIARFQRLLGKKVIFITGTDEHGEKIAAAAADGGSSPSEHCDVVSQAYKTLWKDL 171 (345)
Q Consensus 92 ~I~~~~PypnG~LHIGHar~~i~~DvlaR~lr~~G~~V~~v~G~D~~G~~I~~~A~~~g~~p~~~~~~~~~~~~~~l~~l 171 (345)
+++.-.|.|||+|||||++++++...+|| +..|.=++++=-+|. ......+.+.|.++|+.|
T Consensus 2 v~tRFAPsPtG~lHiG~~r~al~n~~~Ar--~~~G~~iLRieDtD~----------------~R~~~~~~~~i~~~L~wl 63 (314)
T PF00749_consen 2 VRTRFAPSPTGYLHIGHARTALLNYLFAR--KYGGKFILRIEDTDP----------------ERCRPEFYDAILEDLRWL 63 (314)
T ss_dssp -EEEE---SSSS-BHHHHHHHHHHHHHHH--HTTSEEEEEEETSST----------------TTCHHHHHHHHHHHHHHH
T ss_pred eeEeeCCCCCCCcccchhHHHHHHHHHHh--ccCceEEEecccccc----------------ccchhhHHHHHHhheeEE
Confidence 45667889999999999999999999999 666766665544431 122345788899999999
Q ss_pred CcccC-ccccCCChhhHHHHHHHHHHHHhCCCeee
Q 046127 172 DIAYD-KFIRTTEPKHEAIVKEFYSSVLANGDIYK 205 (345)
Q Consensus 172 gI~~D-~f~~T~~~~~~~~v~~~~~~L~~kG~iy~ 205 (345)
|+.+| ..+.. +.+.+.-.+..++|+++|.+|.
T Consensus 64 Gl~~D~~~~~Q--S~r~~~Y~~~~~~L~~~g~aY~ 96 (314)
T PF00749_consen 64 GLEWDYGPYYQ--SDRLEIYQEAAEKLIDKGKAYP 96 (314)
T ss_dssp T---STCEEEG--GGGHHHHHHHHHHHHHTTSEEE
T ss_pred EEecCCeEEeH--HHHHHHHHHHHHHHhhcCCCcc
Confidence 99998 44433 3677788889999999999996
No 83
>PRK05710 glutamyl-Q tRNA(Asp) synthetase; Reviewed
Probab=98.70 E-value=3.6e-08 Score=94.20 Aligned_cols=95 Identities=15% Similarity=0.159 Sum_probs=72.2
Q ss_pred EEEEccCCCCCCcCchhHHHHHHHHHHHHHHHHHcCCeEEEEcCCCCcChHHHHHHHhCCCCHHHHHHHHHHHHHHHHhh
Q 046127 91 FVLTTPLYYVNAPPHMGSAYTTIAADAIARFQRLLGKKVIFITGTDEHGEKIAAAAADGGSSPSEHCDVVSQAYKTLWKD 170 (345)
Q Consensus 91 ~~I~~~~PypnG~LHIGHar~~i~~DvlaR~lr~~G~~V~~v~G~D~~G~~I~~~A~~~g~~p~~~~~~~~~~~~~~l~~ 170 (345)
-+++.-.|.|||+|||||++++++...+|| ...|.=++ -+||.+ +......+.+.|.++|++
T Consensus 5 ~v~~RFAPSPTG~LHlG~~rtAL~n~l~Ar--~~~G~~iL---RiEDtD-------------~~R~~~~~~~~I~~dL~w 66 (299)
T PRK05710 5 PYIGRFAPSPSGPLHFGSLVAALGSWLDAR--AHGGRWLL---RIEDID-------------PPREVPGAADAILADLEW 66 (299)
T ss_pred ceeEEeCcCCCCcccHHHHHHHHHHHHHHH--HcCCEEEE---EECcCC-------------CCccchHHHHHHHHHHHH
Confidence 367788899999999999999999999998 34554444 344433 222345578899999999
Q ss_pred cCcccCc-cccCCChhhHHHHHHHHHHHHhCCCeee
Q 046127 171 LDIAYDK-FIRTTEPKHEAIVKEFYSSVLANGDIYK 205 (345)
Q Consensus 171 lgI~~D~-f~~T~~~~~~~~v~~~~~~L~~kG~iy~ 205 (345)
|||.+|. .+..+ .+.+.-.+..++|.++|.+|.
T Consensus 67 lGl~wDe~~~~QS--~r~~~Y~~~~~~L~~~G~aY~ 100 (299)
T PRK05710 67 LGLHWDGPVLYQS--QRHDAYRAALDRLRAQGLVYP 100 (299)
T ss_pred CCCCCCCCceEee--ccHHHHHHHHHHHHHCCCcee
Confidence 9999994 33333 467788889999999999994
No 84
>cd00418 GlxRS_core catalytic core domain of glutamyl-tRNA and glutaminyl-tRNA synthetase. Glutamyl-tRNA synthetase(GluRS)/Glutaminyl-tRNA synthetase (GlnRS) cataytic core domain. These enzymes attach Glu or Gln, respectively, to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea, cellular organelles, and some bacteria lack GlnRS. In these cases, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme. The discriminating form of GluRS differs from GlnRS and the non-discriminating form of GluRS in their C-terminal anti-codon bind
Probab=98.66 E-value=5.3e-08 Score=89.77 Aligned_cols=90 Identities=19% Similarity=0.213 Sum_probs=68.5
Q ss_pred EEEccCCCCCCcCchhHHHHHHHHHHHHHHHHHcCCeEEEEcCCCCcChHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhc
Q 046127 92 VLTTPLYYVNAPPHMGSAYTTIAADAIARFQRLLGKKVIFITGTDEHGEKIAAAAADGGSSPSEHCDVVSQAYKTLWKDL 171 (345)
Q Consensus 92 ~I~~~~PypnG~LHIGHar~~i~~DvlaR~lr~~G~~V~~v~G~D~~G~~I~~~A~~~g~~p~~~~~~~~~~~~~~l~~l 171 (345)
+++.-.|.|||+|||||++++++...+|| +..|.=+++ +||.+ +......+.+.|.++|+.|
T Consensus 2 v~~RFAPsPtG~lHlG~~r~al~n~l~Ar--~~~G~~iLR---ieDtD-------------~~R~~~~~~~~I~~dL~wl 63 (230)
T cd00418 2 VVTRFAPSPTGYLHIGHARTALFNFAFAR--KYGGKFILR---IEDTD-------------PERSRPEYVESILEDLKWL 63 (230)
T ss_pred ceEEeCCCCCCcccHHHHHHHHHHHHHHH--HcCCeEEEE---eCcCC-------------CCCCChHHHHHHHHHHHHc
Confidence 46677899999999999999999999999 455655554 44433 2223456789999999999
Q ss_pred CcccCc-cccCCChhhHHHHHHHHHHHHhCC
Q 046127 172 DIAYDK-FIRTTEPKHEAIVKEFYSSVLANG 201 (345)
Q Consensus 172 gI~~D~-f~~T~~~~~~~~v~~~~~~L~~kG 201 (345)
|+.+|. .+..+ .+.+.-++.+.+|.++|
T Consensus 64 Gl~wd~~~~~QS--~r~~~y~~~~~~L~~~g 92 (230)
T cd00418 64 GLDWDEGPYRQS--DRFDLYRAYAEELIKKG 92 (230)
T ss_pred CCCCCCCeeehh--cCHHHHHHHHHHHHHcC
Confidence 999995 33333 46677788889999999
No 85
>PRK12410 glutamylglutaminyl-tRNA synthetase; Provisional
Probab=98.64 E-value=6e-08 Score=96.93 Aligned_cols=91 Identities=13% Similarity=0.172 Sum_probs=70.4
Q ss_pred ccCCCCCCcCchhHHHHHHHHHHHHHHHHHcCCeEEEEcCCCCcChHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhcCcc
Q 046127 95 TPLYYVNAPPHMGSAYTTIAADAIARFQRLLGKKVIFITGTDEHGEKIAAAAADGGSSPSEHCDVVSQAYKTLWKDLDIA 174 (345)
Q Consensus 95 ~~~PypnG~LHIGHar~~i~~DvlaR~lr~~G~~V~~v~G~D~~G~~I~~~A~~~g~~p~~~~~~~~~~~~~~l~~lgI~ 174 (345)
.-.|.|||+|||||+|+++....+|| +..|.=++++=-+| +......+.+.|.++|+.||+.
T Consensus 3 RFAPSPTG~LHiG~artAL~n~l~Ar--~~gG~fiLRiEDTD----------------~~R~~~e~~~~I~~~L~WlGl~ 64 (433)
T PRK12410 3 RFAPSPTGDMHIGNLRAAIFNYIVAK--QQNEDFLIRIEDTD----------------KERNIEGKDKEILEILNLFGIS 64 (433)
T ss_pred ccCCCCCCcccHHHHHHHHHHHHHHH--HcCCEEEEEeCcCC----------------CCcCChHHHHHHHHHHHHcCCC
Confidence 34689999999999999999999999 56666555443333 1223456788999999999999
Q ss_pred cCccccCCChhhHHHHHHHHHHHHhCCCeee
Q 046127 175 YDKFIRTTEPKHEAIVKEFYSSVLANGDIYK 205 (345)
Q Consensus 175 ~D~f~~T~~~~~~~~v~~~~~~L~~kG~iy~ 205 (345)
+|.-+..+ .+.+.-.+..++|.++|.+|.
T Consensus 65 wDe~y~QS--eR~~~Y~~~a~~Li~~G~AY~ 93 (433)
T PRK12410 65 WDKLVYQS--ENLKFHRQMAEKLLSEKKAFA 93 (433)
T ss_pred CCCCeehh--ccHHHHHHHHHHHHHcCCeee
Confidence 99655444 456777888999999999994
No 86
>TIGR00440 glnS glutaminyl-tRNA synthetase. This protein is a relatively rare aminoacyl-tRNA synthetase, found in the cytosolic compartment of eukaryotes, in E. coli and a number of other Gram-negative Bacteria, and in Deinococcus radiodurans. In contrast, the pathway to Gln-tRNA in mitochondria, Archaea, Gram-positive Bacteria, and a number of other lineages is by misacylation with Glu followed by transamidation to correct the aminoacylation to Gln. This enzyme is a class I tRNA synthetase (hit by the pfam model tRNA-synt_1c) and is quite closely related to glutamyl-tRNA synthetases.
Probab=98.64 E-value=6.8e-08 Score=98.40 Aligned_cols=95 Identities=16% Similarity=0.077 Sum_probs=71.5
Q ss_pred EEEccCCCCCCcCchhHHHHHHHHHHHHHHHHHcCCeEEEEcCCCCcChHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhc
Q 046127 92 VLTTPLYYVNAPPHMGSAYTTIAADAIARFQRLLGKKVIFITGTDEHGEKIAAAAADGGSSPSEHCDVVSQAYKTLWKDL 171 (345)
Q Consensus 92 ~I~~~~PypnG~LHIGHar~~i~~DvlaR~lr~~G~~V~~v~G~D~~G~~I~~~A~~~g~~p~~~~~~~~~~~~~~l~~l 171 (345)
+++.-+|.|||.|||||++++++...+|| +..|.-+++ +||.+ |..-..++.+.|.++|+.|
T Consensus 1 V~tRFaPsPtG~LHiG~ar~al~n~~~A~--~~~G~~iLR---ieDTd-------------~~r~~~e~~~~I~~dL~wL 62 (522)
T TIGR00440 1 VHTRFPPEPNGYLHIGHAKSICLNFGYAK--YYNGTCNLR---FDDTN-------------PVKEDPEYVESIKRDVEWL 62 (522)
T ss_pred CeEecCCCCCCcccHHHHHHHHHHHHHHH--HhCCEEEEE---EcCCC-------------cccCChHHHHHHHHHHHHc
Confidence 35677899999999999999999999999 455654444 44443 2233456789999999999
Q ss_pred CcccC-ccccCCChhhHHHHHHHHHHHHhCCCeeec
Q 046127 172 DIAYD-KFIRTTEPKHEAIVKEFYSSVLANGDIYKA 206 (345)
Q Consensus 172 gI~~D-~f~~T~~~~~~~~v~~~~~~L~~kG~iy~~ 206 (345)
|+.+| ..+..+ .+.+...+...+|+++|.+|..
T Consensus 63 G~~~d~~~~~qS--~~~~~~~~~a~~Li~~G~AY~c 96 (522)
T TIGR00440 63 GFKWEGKIRYSS--DYFDELYRYAEELIKKGLAYVD 96 (522)
T ss_pred CCCCCCCceEcc--ccHHHHHHHHHHHHHcCCEEee
Confidence 99996 333333 4556666777999999999963
No 87
>PRK05347 glutaminyl-tRNA synthetase; Provisional
Probab=98.63 E-value=7.6e-08 Score=98.34 Aligned_cols=94 Identities=17% Similarity=0.123 Sum_probs=71.1
Q ss_pred EEEccCCCCCCcCchhHHHHHHHHHHHHHHHHHcCCeEEEEcCCCCcChHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhc
Q 046127 92 VLTTPLYYVNAPPHMGSAYTTIAADAIARFQRLLGKKVIFITGTDEHGEKIAAAAADGGSSPSEHCDVVSQAYKTLWKDL 171 (345)
Q Consensus 92 ~I~~~~PypnG~LHIGHar~~i~~DvlaR~lr~~G~~V~~v~G~D~~G~~I~~~A~~~g~~p~~~~~~~~~~~~~~l~~l 171 (345)
+++.-+|.|||.|||||++++++...+|| +..|.-+++ +||.+ |.....++.+.|.++|+.|
T Consensus 30 v~tRFaPsPtG~LHiG~ar~al~n~~~Ar--~~~G~~iLR---ieDTd-------------~~r~~~e~~~~I~~dL~wL 91 (554)
T PRK05347 30 VHTRFPPEPNGYLHIGHAKSICLNFGLAQ--DYGGKCNLR---FDDTN-------------PEKEDQEYVDSIKEDVRWL 91 (554)
T ss_pred eEEEeCCCCCCcccHHHHHHHHHHHHHHH--HhCCEEEEE---ECCCC-------------CCcCChHHHHHHHHHHHHc
Confidence 77888999999999999999999999999 455554443 44443 3334456789999999999
Q ss_pred CcccC-ccccCCChhhHHHHHHHHHHHHhCCCeee
Q 046127 172 DIAYD-KFIRTTEPKHEAIVKEFYSSVLANGDIYK 205 (345)
Q Consensus 172 gI~~D-~f~~T~~~~~~~~v~~~~~~L~~kG~iy~ 205 (345)
|+.+| ..+.++ .+.+...+...+|+++|.+|.
T Consensus 92 Gi~~d~~~~~qS--~r~~~~y~~a~~Li~~G~AY~ 124 (554)
T PRK05347 92 GFDWSGELRYAS--DYFDQLYEYAVELIKKGKAYV 124 (554)
T ss_pred CCCCCCCceeee--cCHHHHHHHHHHHHHcCCEee
Confidence 99996 333333 345555566689999999995
No 88
>TIGR00464 gltX_bact glutamyl-tRNA synthetase, bacterial family. The glutamyl-tRNA synthetases of the eukaryotic cytosol and of the Archaea are more similar to glutaminyl-tRNA synthetases than to bacterial glutamyl-tRNA synthetases. This alignment models just the bacterial and mitochondrial forms of the enzyme. In many species, the charging of tRNA(gln) proceeds first through misacylation with Glu and then transamidation. For this reason, glutamyl-tRNA synthetases may act on both tRNA(gln) and tRNA(glu). This model is highly specific. Proteins with positive scores below the trusted cutoff may be fragments rather than full-length sequences.
Probab=98.61 E-value=7.9e-08 Score=97.56 Aligned_cols=94 Identities=19% Similarity=0.178 Sum_probs=70.9
Q ss_pred EEEccCCCCCCcCchhHHHHHHHHHHHHHHHHHcCCeEEEEcCCCCcChHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhc
Q 046127 92 VLTTPLYYVNAPPHMGSAYTTIAADAIARFQRLLGKKVIFITGTDEHGEKIAAAAADGGSSPSEHCDVVSQAYKTLWKDL 171 (345)
Q Consensus 92 ~I~~~~PypnG~LHIGHar~~i~~DvlaR~lr~~G~~V~~v~G~D~~G~~I~~~A~~~g~~p~~~~~~~~~~~~~~l~~l 171 (345)
+++.-.|.|||+|||||+|+++....+|| ...|.=+++ +||.+ +......+.+.|.++|+.|
T Consensus 2 v~~RfAPsPtG~lHiG~~rtal~n~l~Ar--~~~G~~iLR---ieDtD-------------~~R~~~~~~~~i~~~L~wl 63 (470)
T TIGR00464 2 VRTRFAPSPTGYLHIGGARTALFNYLFAK--HTGGEFILR---IEDTD-------------LERNIEEAEEAILEGLKWL 63 (470)
T ss_pred ceEeeCCCCCCcccHHHHHHHHHHHHHHH--HcCCEEEEE---eCcCC-------------CccCChHHHHHHHHHHHHC
Confidence 35667889999999999999999999999 555644444 44443 2224455788999999999
Q ss_pred CcccC-ccccCCChhhHHHHHHHHHHHHhCCCeee
Q 046127 172 DIAYD-KFIRTTEPKHEAIVKEFYSSVLANGDIYK 205 (345)
Q Consensus 172 gI~~D-~f~~T~~~~~~~~v~~~~~~L~~kG~iy~ 205 (345)
|+.+| ..++.+ .+.+.-.++..+|.++|.+|.
T Consensus 64 Gl~~de~~~~QS--~r~~~y~~~~~~L~~~g~aY~ 96 (470)
T TIGR00464 64 GISWDEGPYYQS--QRLDIYKKYAKELLEEGLAYR 96 (470)
T ss_pred CCCCCCCeeehh--CCHHHHHHHHHHHHHcCCEEe
Confidence 99999 333333 455666788899999999994
No 89
>PRK14703 glutaminyl-tRNA synthetase/YqeY domain fusion protein; Provisional
Probab=98.59 E-value=8.4e-08 Score=101.79 Aligned_cols=94 Identities=18% Similarity=0.146 Sum_probs=74.1
Q ss_pred EEEccCCCCCCcCchhHHHHHHHHHHHHHHHHHcCCeEEEEcCCCCcChHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhc
Q 046127 92 VLTTPLYYVNAPPHMGSAYTTIAADAIARFQRLLGKKVIFITGTDEHGEKIAAAAADGGSSPSEHCDVVSQAYKTLWKDL 171 (345)
Q Consensus 92 ~I~~~~PypnG~LHIGHar~~i~~DvlaR~lr~~G~~V~~v~G~D~~G~~I~~~A~~~g~~p~~~~~~~~~~~~~~l~~l 171 (345)
+++.-+|.|||+|||||++.+++...+|| +..|.-++ -+||.+ |..-..++.+.|.++|+.|
T Consensus 32 v~tRFaPsPtG~lHiGhar~alln~~~A~--~~~G~~~L---R~eDTd-------------~~r~~~e~~~~I~~dl~wL 93 (771)
T PRK14703 32 VVTRFPPEPNGYLHIGHAKSILLNFGIAR--DYGGRCHL---RMDDTN-------------PETEDTEYVEAIKDDVRWL 93 (771)
T ss_pred eEEEeCcCCCCcccHHHHHHHHHHHHHHH--HhCCEEEE---EeCCCC-------------CCcCChHHHHHHHHHHHHc
Confidence 78889999999999999999999999998 45564444 344443 2334456789999999999
Q ss_pred CcccCc-cccCCChhhHHHHHHHHHHHHhCCCeee
Q 046127 172 DIAYDK-FIRTTEPKHEAIVKEFYSSVLANGDIYK 205 (345)
Q Consensus 172 gI~~D~-f~~T~~~~~~~~v~~~~~~L~~kG~iy~ 205 (345)
|+.+|. .+.++ .|.+...+...+|+++|.+|.
T Consensus 94 G~~wd~~~~~qS--~~~~~y~~~a~~Li~~G~aY~ 126 (771)
T PRK14703 94 GFDWGEHLYYAS--DYFERMYAYAEQLIKMGLAYV 126 (771)
T ss_pred CCCCCCCceEee--cCHHHHHHHHHHHHHcCCccc
Confidence 999984 33344 577788888899999999995
No 90
>PRK14895 gltX glutamyl-tRNA synthetase; Provisional
Probab=98.58 E-value=1.3e-07 Score=96.12 Aligned_cols=94 Identities=24% Similarity=0.234 Sum_probs=72.2
Q ss_pred EEEccCCCCCCcCchhHHHHHHHHHHHHHHHHHcCCeEEEEcCCCCcChHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhc
Q 046127 92 VLTTPLYYVNAPPHMGSAYTTIAADAIARFQRLLGKKVIFITGTDEHGEKIAAAAADGGSSPSEHCDVVSQAYKTLWKDL 171 (345)
Q Consensus 92 ~I~~~~PypnG~LHIGHar~~i~~DvlaR~lr~~G~~V~~v~G~D~~G~~I~~~A~~~g~~p~~~~~~~~~~~~~~l~~l 171 (345)
+++.-.|.|||.|||||+|+++....+|| +..|.=++++ +|.+ +......+.+.|.++|+.|
T Consensus 5 vrtRFAPSPTG~lHiG~artAL~n~l~Ar--~~gG~fiLRI---EDTD-------------~~R~~~~~~~~i~~~L~WL 66 (513)
T PRK14895 5 VITRFAPSPTGFLHIGSARTALFNYLFAR--HHNGKFLLRI---EDTD-------------KERSTKEAVEAIFSGLKWL 66 (513)
T ss_pred eeEeeCCCCCCCccHHHHHHHHHHHHHHH--HcCCEEEEEE---CCCC-------------ccccChHHHHHHHHHHHHc
Confidence 46777889999999999999999999999 5556555544 3332 2334556788999999999
Q ss_pred CcccC-ccccCCChhhHHHHHHHHHHHHhCCCeee
Q 046127 172 DIAYD-KFIRTTEPKHEAIVKEFYSSVLANGDIYK 205 (345)
Q Consensus 172 gI~~D-~f~~T~~~~~~~~v~~~~~~L~~kG~iy~ 205 (345)
|+.+| ..++.+ .+.+.-.+..++|.++|.+|.
T Consensus 67 Gl~wDe~py~QS--eR~~~Y~~~a~~Li~~G~AY~ 99 (513)
T PRK14895 67 GLDWNGEVIFQS--KRNNLYKEAALKLLQNGKAYY 99 (513)
T ss_pred CCCCCCCceeEe--CcHHHHHHHHHHHHHcCCeEE
Confidence 99999 334333 355677888899999999994
No 91
>PRK01406 gltX glutamyl-tRNA synthetase; Reviewed
Probab=98.57 E-value=1.3e-07 Score=96.22 Aligned_cols=94 Identities=22% Similarity=0.210 Sum_probs=73.2
Q ss_pred EEEccCCCCCCcCchhHHHHHHHHHHHHHHHHHcCCeEEEEcCCCCcChHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhc
Q 046127 92 VLTTPLYYVNAPPHMGSAYTTIAADAIARFQRLLGKKVIFITGTDEHGEKIAAAAADGGSSPSEHCDVVSQAYKTLWKDL 171 (345)
Q Consensus 92 ~I~~~~PypnG~LHIGHar~~i~~DvlaR~lr~~G~~V~~v~G~D~~G~~I~~~A~~~g~~p~~~~~~~~~~~~~~l~~l 171 (345)
+++.-.|.|||.|||||+|+++....+|| +..|.=+++ +||.+ +......+.+.|.++|+.|
T Consensus 5 v~~RfAPSPtG~lHiG~~rtal~n~l~Ar--~~~G~fiLR---ieDtD-------------~~R~~~~~~~~i~~~L~wl 66 (476)
T PRK01406 5 VRTRFAPSPTGYLHIGGARTALFNWLFAR--HHGGKFILR---IEDTD-------------QERSTEEAEEAILEGLKWL 66 (476)
T ss_pred eeEEeCCCCCCcccHHHHHHHHHHHHHHH--HcCCEEEEE---eCcCC-------------CCCCChHHHHHHHHHHHHC
Confidence 56778889999999999999999999999 556654444 44433 2234556788999999999
Q ss_pred CcccCcc--------ccCCChhhHHHHHHHHHHHHhCCCeee
Q 046127 172 DIAYDKF--------IRTTEPKHEAIVKEFYSSVLANGDIYK 205 (345)
Q Consensus 172 gI~~D~f--------~~T~~~~~~~~v~~~~~~L~~kG~iy~ 205 (345)
|+.+|.- ++.+ .+.+.-.+..++|.++|.+|.
T Consensus 67 Gl~~De~p~~~~~gpy~QS--~r~~~y~~~~~~L~~~g~aY~ 106 (476)
T PRK01406 67 GLDWDEGPDGGPYGPYRQS--ERLDIYKEYAEQLLEEGKAYY 106 (476)
T ss_pred CCCCCCCCccCCCCceehh--cCHHHHHHHHHHHHHcCCeee
Confidence 9999943 3333 456788888999999999995
No 92
>KOG1195 consensus Arginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=98.57 E-value=1.2e-07 Score=94.45 Aligned_cols=182 Identities=13% Similarity=0.106 Sum_probs=122.3
Q ss_pred HHHHHHhhchhcchhhccccccccccccccccccccccccccccccc-ccccCCCCCC-CCCCCCCEEEEccCCCCCCcC
Q 046127 27 EMAARINYSIQNSLWLLNPLHSKATTHFRNRLKFRQNLFSLSKGAVF-CSYATNTDKS-GTEPADPFVLTTPLYYVNAPP 104 (345)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~~~~~I~~~~PypnG~L 104 (345)
+.|.|.+-++-...++ +.+.+-...+.|..++-+.-+.-+- -+.+...++. ....+++++|...+||.+.+.
T Consensus 52 ~~a~~~~e~~~~~~~v------~~~~~~~~~~~f~ln~~~~~k~~l~~i~~~~~~~g~~~~~~~k~iVVefSSPNIAK~F 125 (567)
T KOG1195|consen 52 EDALRWAEALPCNRIV------EEVGASGPFVQFFLNRRRLIKSVLPIIEEQREKYGKNELGSGKKIVVEFSSPNIAKPF 125 (567)
T ss_pred HHHHHHHHhcccccch------HHHhcCCCeEEEEecHHHHHHHHHHHHHHHhcccCccccccCceEEEEecCCCccccc
Confidence 4555666666665555 5566666667777776433221111 1222333321 234579999999999999999
Q ss_pred chhHHHHHHHHHHHHHHHHHcCCeEEEEcCCCCcChHHHHHHH------------------------------hCCCC--
Q 046127 105 HMGSAYTTIAADAIARFQRLLGKKVIFITGTDEHGEKIAAAAA------------------------------DGGSS-- 152 (345)
Q Consensus 105 HIGHar~~i~~DvlaR~lr~~G~~V~~v~G~D~~G~~I~~~A~------------------------------~~g~~-- 152 (345)
|+||.|..+++-.+++..+..|++|..+...-|.|..+-..|. +...+
T Consensus 126 HvGhLRsTiiG~flanl~e~~G~~Vtr~NYLGDWGkQFgll~~g~~~~g~e~~L~~~pI~hL~dvYVk~nk~~~~~~~~~ 205 (567)
T KOG1195|consen 126 HVGHLRSTIIGNFLANLHEALGWEVTRVNYLGDWGKQFGLLALGFQLYGDEEELQLNPIKHLFDVYVKINKDAEKDPDTA 205 (567)
T ss_pred ccchhhhhhhhhHhhhhHHhhCCceeehhhhhHHHHHhhHHhccHHhhCchhhhccchHHHHHHHHHHhhhhhhhCcchH
Confidence 9999999999999999999999999987766666644222111 00000
Q ss_pred --------------------HHHHHHHHHHHHHHHHhhcCcccCccccCCChhhHHHHHHHHHHHHhCCCeeecccCccc
Q 046127 153 --------------------PSEHCDVVSQAYKTLWKDLDIAYDKFIRTTEPKHEAIVKEFYSSVLANGDIYKADYEGLY 212 (345)
Q Consensus 153 --------------------p~~~~~~~~~~~~~~l~~lgI~~D~f~~T~~~~~~~~v~~~~~~L~~kG~iy~~~~~~~y 212 (345)
.+.+-+..+....+.+++|||.||.|.-++ ..+.+..+.+...+.+.|++.+.++...+
T Consensus 206 ~~are~f~rlE~~d~e~~k~Wqrfr~lsIe~l~~~Y~Rl~v~FD~y~gES-qv~~e~~~~~~d~~rs~~l~~e~dG~~vi 284 (567)
T KOG1195|consen 206 EEAREFFKRLEDGDEEHLKLWQRFRDLSIEKLIKTYNRLNVKFDEYSGES-QVSNEKMQEALDLLRSANLTEEIDGTIVI 284 (567)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHhhhhhHHHHHHHHHHhceeeeeccchH-HHHHHHHHHHHHHHHhcCCcccCCCcEEE
Confidence 012334446677888999999999885443 26778889999999999977777776555
Q ss_pred ccC
Q 046127 213 CVN 215 (345)
Q Consensus 213 c~~ 215 (345)
.-+
T Consensus 285 dL~ 287 (567)
T KOG1195|consen 285 DLS 287 (567)
T ss_pred Eec
Confidence 433
No 93
>PLN02859 glutamine-tRNA ligase
Probab=98.55 E-value=1.9e-07 Score=98.48 Aligned_cols=94 Identities=16% Similarity=0.063 Sum_probs=70.2
Q ss_pred EEEccCCCCCCcCchhHHHHHHHHHHHHHHHHHcCCeEEEEcCCCCcChHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhc
Q 046127 92 VLTTPLYYVNAPPHMGSAYTTIAADAIARFQRLLGKKVIFITGTDEHGEKIAAAAADGGSSPSEHCDVVSQAYKTLWKDL 171 (345)
Q Consensus 92 ~I~~~~PypnG~LHIGHar~~i~~DvlaR~lr~~G~~V~~v~G~D~~G~~I~~~A~~~g~~p~~~~~~~~~~~~~~l~~l 171 (345)
+++.-+|.|||.|||||++.+++...+||. ..|.-++ -+||.+ |..-..++.+.|.++|+.|
T Consensus 265 V~tRFaPsPtG~LHiGharaallN~~~Ar~--~~G~~~L---RieDTd-------------p~r~~~e~~~~I~edL~WL 326 (788)
T PLN02859 265 VYTRFPPEPNGYLHIGHAKAMFVDFGLAKE--RGGCCYL---RFDDTN-------------PEAEKKEYIDHIEEIVEWM 326 (788)
T ss_pred eEEEeCCCCCCcccHHHHHHHHHHHHHHHH--hCCEEEE---EecCCC-------------CCccchHHHHHHHHHHHHc
Confidence 668888999999999999999999999994 4555444 344443 3334567889999999999
Q ss_pred CcccCccccCCChhhHHHHHHHHHHHHhCCCeee
Q 046127 172 DIAYDKFIRTTEPKHEAIVKEFYSSVLANGDIYK 205 (345)
Q Consensus 172 gI~~D~f~~T~~~~~~~~v~~~~~~L~~kG~iy~ 205 (345)
|+.+|..+.+++ |.+..-+...+|+++|.+|.
T Consensus 327 G~~~d~~~~qSd--~f~~~Y~~A~~Li~~G~AY~ 358 (788)
T PLN02859 327 GWEPFKITYTSD--YFQELYELAVELIRRGHAYV 358 (788)
T ss_pred CCCCCCcccccH--hHHHHHHHHHHHHHcCCeEe
Confidence 999986544443 33333345677999999995
No 94
>cd00808 GluRS_core catalytic core domain of discriminating glutamyl-tRNA synthetase. Discriminating Glutamyl-tRNA synthetase (GluRS) catalytic core domain . The discriminating form of GluRS is only found in bacteria and cellular organelles. GluRS is a monomer that attaches Glu to the appropriate tRNA. Like other class I tRNA synthetases, GluRS aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=98.54 E-value=2e-07 Score=86.56 Aligned_cols=90 Identities=21% Similarity=0.224 Sum_probs=67.1
Q ss_pred EEEccCCCCCCcCchhHHHHHHHHHHHHHHHHHcCCeEEEEcCCCCcChHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhc
Q 046127 92 VLTTPLYYVNAPPHMGSAYTTIAADAIARFQRLLGKKVIFITGTDEHGEKIAAAAADGGSSPSEHCDVVSQAYKTLWKDL 171 (345)
Q Consensus 92 ~I~~~~PypnG~LHIGHar~~i~~DvlaR~lr~~G~~V~~v~G~D~~G~~I~~~A~~~g~~p~~~~~~~~~~~~~~l~~l 171 (345)
+++.-.|.|||+|||||++++++...++| +..| .++.-+||.+ +......+.+.|.++|++|
T Consensus 2 v~~RfAPsPtG~LHlG~~~~al~n~l~ar--~~~G---~~ilRieDtd-------------~~r~~~~~~~~i~~dL~wl 63 (239)
T cd00808 2 VRTRFAPSPTGFLHIGGARTALFNYLFAR--KHGG---KFILRIEDTD-------------QERSVPEAEEAILEALKWL 63 (239)
T ss_pred ceEEeCCCCCCcccHHHHHHHHHHHHHHH--HcCC---eEEEEECcCC-------------CCCCchHHHHHHHHHHHHc
Confidence 35667889999999999999999999999 3444 3444455533 1223345788899999999
Q ss_pred CcccCc---------cccCCChhhHHHHHHHHHHHHhCC
Q 046127 172 DIAYDK---------FIRTTEPKHEAIVKEFYSSVLANG 201 (345)
Q Consensus 172 gI~~D~---------f~~T~~~~~~~~v~~~~~~L~~kG 201 (345)
||.+|. .+..+ .+.+...+..++|.++|
T Consensus 64 Gl~~d~~~~~~g~~~~~~QS--~r~~~y~~~~~~L~~~g 100 (239)
T cd00808 64 GLDWDEGPDVGGPYGPYRQS--ERLEIYRKYAEKLLEKG 100 (239)
T ss_pred CCCCCcCCccCCCCCCEeee--CCHHHHHHHHHHHHHcC
Confidence 999997 33333 46677778889999888
No 95
>PLN02627 glutamyl-tRNA synthetase
Probab=98.51 E-value=2.3e-07 Score=94.69 Aligned_cols=96 Identities=24% Similarity=0.219 Sum_probs=72.6
Q ss_pred EEEccCCCCCCcCchhHHHHHHHHHHHHHHHHHcCCeEEEEcCCCCcChHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhc
Q 046127 92 VLTTPLYYVNAPPHMGSAYTTIAADAIARFQRLLGKKVIFITGTDEHGEKIAAAAADGGSSPSEHCDVVSQAYKTLWKDL 171 (345)
Q Consensus 92 ~I~~~~PypnG~LHIGHar~~i~~DvlaR~lr~~G~~V~~v~G~D~~G~~I~~~A~~~g~~p~~~~~~~~~~~~~~l~~l 171 (345)
+++.-.|.|||.|||||+|+++....+|| +..|.=++++=-+| +......+.+.|.++|+.|
T Consensus 46 vr~RFAPSPTG~LHiG~aRtAL~n~l~Ar--~~gG~fiLRIEDTD----------------~~R~~~e~~~~I~~~L~WL 107 (535)
T PLN02627 46 VRVRFAPSPTGNLHVGGARTALFNYLFAR--SKGGKFVLRIEDTD----------------LARSTKESEEAVLRDLKWL 107 (535)
T ss_pred eEEEeCCCCCCCccHHHHHHHHHHHHHHH--HhCCEEEEEeCcCC----------------CCCCChHHHHHHHHHHHHc
Confidence 66677779999999999999999999999 56666555544333 2224456788999999999
Q ss_pred CcccCcccc-------CCChhhHHHHHHHHHHHHhCCCeee
Q 046127 172 DIAYDKFIR-------TTEPKHEAIVKEFYSSVLANGDIYK 205 (345)
Q Consensus 172 gI~~D~f~~-------T~~~~~~~~v~~~~~~L~~kG~iy~ 205 (345)
||.+|.-+. -..+.+.+.-.+..++|+++|.+|.
T Consensus 108 Gl~wDegp~~gg~~gpy~QSeR~~~Y~~~a~~Li~~G~AY~ 148 (535)
T PLN02627 108 GLDWDEGPDVGGEYGPYRQSERNAIYKQYAEKLLESGHVYP 148 (535)
T ss_pred CCCCCcCcccCCCCCCeeeeccHHHHHHHHHHHHHcCCeee
Confidence 999995211 1123456777888999999999994
No 96
>PF01921 tRNA-synt_1f: tRNA synthetases class I (K); InterPro: IPR002904 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Lysyl-tRNA synthetase (6.1.1.6 from EC) is an alpha 2 homodimer that belong to both class I and class II. In eubacteria and eukaryota lysyl-tRNA synthetases belong to class II in the same family as aspartyl tRNA synthetase. The class Ic lysyl-tRNA synthetase family is present in archaea and in a number of bacterial groups that include the alphaproteobacteria and spirochaetes[]. A refined crystal structures shows that the active site of LysU is shaped to position the substrates for the nucleophilic attack of the lysine carboxylate on the ATP alpha-phosphate. No residues are directly involved in catalysis, but a number of highly conserved amino acids and three metal ions coordinate the substrates and stabilise the pentavalent transition state. A loop close to the catalytic pocket, disordered in the lysine-bound structure, becomes ordered upon adenine binding [].; GO: 0000166 nucleotide binding, 0004824 lysine-tRNA ligase activity, 0005524 ATP binding, 0006430 lysyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IRX_A.
Probab=98.50 E-value=2.2e-08 Score=97.37 Aligned_cols=172 Identities=15% Similarity=0.188 Sum_probs=88.4
Q ss_pred CCCCEEEEccCCCCCCcCchhHHHHHHHHHHHHHHHHHcCCeEEEEcCCCCcCh--HHHH----H--HHhCCC------C
Q 046127 87 PADPFVLTTPLYYVNAPPHMGSAYTTIAADAIARFQRLLGKKVIFITGTDEHGE--KIAA----A--AADGGS------S 152 (345)
Q Consensus 87 ~~~~~~I~~~~PypnG~LHIGHar~~i~~DvlaR~lr~~G~~V~~v~G~D~~G~--~I~~----~--A~~~g~------~ 152 (345)
.++.+++.++. .|+|.+|||++|..+.+|+++|-++.+|++|.+++.+||++- +|-. . ++-.|. +
T Consensus 21 ~~~~~v~~sG~-sPSG~~HIGn~rEv~~~~~V~~al~~~g~~~r~i~~~DD~D~lRKvP~~~p~~~~~~ylg~Plt~VPd 99 (360)
T PF01921_consen 21 GKEPYVFASGI-SPSGLPHIGNFREVLRADMVARALRDRGKDVRLIYFSDDMDPLRKVPPNVPNPELEKYLGKPLTRVPD 99 (360)
T ss_dssp --SEEEEEEEE---SS---HHHHHHHHHHHHHHHHHHTTT-EEEEEEEE-TTSB-----TTS-CC-CCCCTTSBTTTSB-
T ss_pred CCccEEEecCC-CCCCCcccccccchhhHHHHHHHHHHcCCCEEEEEEeecCCcccCCCCCCChHHHHHhcCCccccCCC
Confidence 34566666665 899999999999999999999999999999999999999872 1111 1 111121 1
Q ss_pred ----HHHHHHHHHHHHHHHHhhcCcccCccccCC---ChhhH----------HHHHHHHHHHHhCCCeeeccc--Ccccc
Q 046127 153 ----PSEHCDVVSQAYKTLWKDLDIAYDKFIRTT---EPKHE----------AIVKEFYSSVLANGDIYKADY--EGLYC 213 (345)
Q Consensus 153 ----p~~~~~~~~~~~~~~l~~lgI~~D~f~~T~---~~~~~----------~~v~~~~~~L~~kG~iy~~~~--~~~yc 213 (345)
...+++++...+.+.|+.|||.++....|. +..|. +.+.+++.+...+. ...++ -..+|
T Consensus 100 P~G~~~SyaeH~~~~~~~~L~~~gie~e~~s~te~Y~sG~y~~~i~~aL~~~~~I~~Il~~~~~~~--~~~~y~Pf~piC 177 (360)
T PF01921_consen 100 PFGCHESYAEHFNAPFEEFLDEFGIEYEFISQTEMYRSGRYDEQIRTALENRDEIREILNEYRGRE--RPETYSPFLPIC 177 (360)
T ss_dssp TTSSSSCHHHHHHHHHHHHHHTTT---EEEECCCCCCTTTTHHHHCHHHHTHHHHHHHHHHHHHHT----TT--SEEEEE
T ss_pred CCCCCccHHHHHHHHHHHHHHHcCCceEEEeHHHhhhCCchHHHHHHHHHhHHHHHHHHHHhcCcC--CCCCeeeeeeec
Confidence 136899999999999999999986433221 12333 33344444432221 11111 14559
Q ss_pred cCCCCccchh----hhhc---CCcCCCCCCCceEeeccccccchhHhHHHHHHHHh
Q 046127 214 VNCEEYKDEK----ELLE---NQCCPIHLKPCVARKEDNYFFALSKYQKLLEDTLT 262 (345)
Q Consensus 214 ~~c~~~l~d~----el~~---~~~c~~~~~pve~r~~~~~f~~l~~~~~~L~e~l~ 262 (345)
++|++...-. +..+ .-.|..||..-+.--...- -+|.==-++-..|.-
T Consensus 178 ~~cGri~tt~v~~~d~~~~~v~Y~c~~cG~~g~~~i~~g~-gKL~WkvDW~mRW~~ 232 (360)
T PF01921_consen 178 EKCGRIDTTEVTEYDPEGGTVTYRCEECGHEGEVDITGGN-GKLQWKVDWPMRWAA 232 (360)
T ss_dssp TTTEE--EEEEEEE--SSSEEEEE--TTS---EEETTTT--EEE-HHHHHHHHHHH
T ss_pred cccCCcccceeeEeecCCCEEEEEecCCCCEEEEecCCCc-ccccCCCcChhhhhh
Confidence 9999965421 1111 1358888876554433311 333323355555543
No 97
>COG1384 LysS Lysyl-tRNA synthetase (class I) [Translation, ribosomal structure and biogenesis]
Probab=98.49 E-value=3.2e-07 Score=92.04 Aligned_cols=89 Identities=18% Similarity=0.217 Sum_probs=71.8
Q ss_pred CCEEEEccCCCCCCcCchhHHHHHHHHHHHHHHHHHcCCeEEEEcCCCCcCh--------HH-HHHHHhCCCC-------
Q 046127 89 DPFVLTTPLYYVNAPPHMGSAYTTIAADAIARFQRLLGKKVIFITGTDEHGE--------KI-AAAAADGGSS------- 152 (345)
Q Consensus 89 ~~~~I~~~~PypnG~LHIGHar~~i~~DvlaR~lr~~G~~V~~v~G~D~~G~--------~I-~~~A~~~g~~------- 152 (345)
+.++|.++. +|+|.+|||++|..+.+|+++|-+|.+|++|.+++-+||++- |- +...+-.|+.
T Consensus 19 ~~~~v~tGi-sPSG~~HIGn~rEv~t~d~V~ralr~~g~~~r~I~~~DD~D~lRkvp~~lp~~~~~e~Ylg~Plt~IPdP 97 (521)
T COG1384 19 DEYVVATGI-SPSGLIHIGNFREVLTADAVRRALRDRGDEVRLIYISDDYDPLRKVPRNLPDPEELEQYLGMPLTEIPDP 97 (521)
T ss_pred CcEEEecCc-CCCCCcccccHHHHHHHHHHHHHHHHcCCceEEEEEccCCcccccCCCCCCChHHHHHHcCCccccCCCC
Confidence 667777776 899999999999999999999999999999999999999872 11 2222223432
Q ss_pred ---HHHHHHHHHHHHHHHHhhcCcccCcc
Q 046127 153 ---PSEHCDVVSQAYKTLWKDLDIAYDKF 178 (345)
Q Consensus 153 ---p~~~~~~~~~~~~~~l~~lgI~~D~f 178 (345)
...+++++...|.+.|+.+||.+...
T Consensus 98 ~G~~~Sya~hf~~~f~~~l~~~Gi~~E~~ 126 (521)
T COG1384 98 FGCCDSYAEHFLRPFEEFLDEFGIEVEFV 126 (521)
T ss_pred ccccchHHHHHHHHHHHHHHhcCCceEEE
Confidence 24688999999999999999988743
No 98
>KOG1147 consensus Glutamyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=98.21 E-value=5.7e-06 Score=83.10 Aligned_cols=99 Identities=17% Similarity=0.179 Sum_probs=76.1
Q ss_pred EEEEccCCCCCCcCchhHHHHHHHHHHHHHHHHHcCCeEEEEcCCCCcChHHHHHHHhCCCCHHHHHHHHHHHHHHHHhh
Q 046127 91 FVLTTPLYYVNAPPHMGSAYTTIAADAIARFQRLLGKKVIFITGTDEHGEKIAAAAADGGSSPSEHCDVVSQAYKTLWKD 170 (345)
Q Consensus 91 ~~I~~~~PypnG~LHIGHar~~i~~DvlaR~lr~~G~~V~~v~G~D~~G~~I~~~A~~~g~~p~~~~~~~~~~~~~~l~~ 170 (345)
=+++.-||-|+|.||||||..+++---++- +..| ..+.-+||. .|..--+++.+.|.+++..
T Consensus 200 kVv~RFPPEpSGyLHIGHAKAALLNqYfa~--~~~G---~LIvRFDDT-------------NPaKE~~eFe~~IleDl~~ 261 (712)
T KOG1147|consen 200 KVVTRFPPEPSGYLHIGHAKAALLNQYFAQ--AYQG---KLIVRFDDT-------------NPAKENEEFEDVILEDLSL 261 (712)
T ss_pred ceEEecCCCCCceeehhhHHHHHHHHHHHH--hcCc---eEEEEecCC-------------CcchhhHHHHHHHHHHHHH
Confidence 456677789999999999998876655543 2333 345556654 3444556788899999999
Q ss_pred cCcccCccccCCChhhHHHHHHHHHHHHhCCCeeecccC
Q 046127 171 LDIAYDKFIRTTEPKHEAIVKEFYSSVLANGDIYKADYE 209 (345)
Q Consensus 171 lgI~~D~f~~T~~~~~~~~v~~~~~~L~~kG~iy~~~~~ 209 (345)
|||.+|.+..|+ .|-+.+.+.-.+|+..|.+|-.+.+
T Consensus 262 LgIkpd~~TyTS--DyF~~i~dycv~likeGKAYvDDTp 298 (712)
T KOG1147|consen 262 LGIKPDRVTYTS--DYFDEIMDYCVKLIKEGKAYVDDTP 298 (712)
T ss_pred hCcCcceeeech--hhHHHHHHHHHHHHhcCcccccCCc
Confidence 999999996666 5888888999999999999987754
No 99
>PRK00390 leuS leucyl-tRNA synthetase; Validated
Probab=97.46 E-value=6.5e-05 Score=81.29 Aligned_cols=42 Identities=29% Similarity=0.416 Sum_probs=27.7
Q ss_pred hhHhHHHHHHHHhcCCCcccChHHHHHHHHHHhcCCCCcccccCCCCCCcccC
Q 046127 250 LSKYQKLLEDTLTENPDFVQPSFRLNEVQGWIKSGLRDFSISRASVDWGIPVP 302 (345)
Q Consensus 250 l~~~~~~L~e~l~~~~~~~~P~~~~~~~~~wl~~gL~D~~ISR~~~~WGIpvP 302 (345)
+..-++++.+.|++....-.| +.-.|+||||||| .+||+|||
T Consensus 390 ~~~a~~~Ii~~L~~~g~~~~~----------v~~~l~DW~ISRQ-R~WG~PIP 431 (805)
T PRK00390 390 SEEAKEAIIAWLEEKGLGKRK----------VNYRLRDWGISRQ-RYWGEPIP 431 (805)
T ss_pred HHHHHHHHHHHHHHcCCCCCc----------eEEECCCcccccc-ccCCCcee
Confidence 345566777777665311011 1125899999999 59999999
No 100
>TIGR00396 leuS_bact leucyl-tRNA synthetase, eubacterial and mitochondrial family. The leucyl-tRNA synthetases belong to two families so broadly different that they are represented by separate models. This model includes both eubacterial and mitochondrial leucyl-tRNA synthetases. It generates higher scores for some valyl-tRNA synthetases than for any archaeal or eukaryotic cytosolic leucyl-tRNA synthetase. Note that the enzyme from Aquifex aeolicus is split into alpha and beta chains; neither chain is long enough to score above the trusted cutoff, but the alpha chain scores well above the noise cutoff. The beta chain must be found by a model and search designed for partial length matches.
Probab=97.39 E-value=0.00013 Score=79.27 Aligned_cols=42 Identities=26% Similarity=0.429 Sum_probs=28.0
Q ss_pred hhHhHHHHHHHHhcCCCcccChHHHHHHHHHHhcCCCCcccccCCCCCCcccC
Q 046127 250 LSKYQKLLEDTLTENPDFVQPSFRLNEVQGWIKSGLRDFSISRASVDWGIPVP 302 (345)
Q Consensus 250 l~~~~~~L~e~l~~~~~~~~P~~~~~~~~~wl~~gL~D~~ISR~~~~WGIpvP 302 (345)
...-++.+.+.|++....-.| +...|+||||||| .+||+|||
T Consensus 386 ~~~A~~~Ii~~L~~~g~~~~~----------v~yrlrDW~ISRQ-RyWG~PIP 427 (842)
T TIGR00396 386 SSEAREAIIAMLEKEGKGKRK----------VNYRLRDWLFSRQ-RYWGEPIP 427 (842)
T ss_pred HHHHHHHHHHHHHHcCCCCce----------EEeecccceeecc-cccCCceE
Confidence 345566777777665321111 1135899999999 59999998
No 101
>KOG1148 consensus Glutaminyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=97.33 E-value=0.00052 Score=70.02 Aligned_cols=94 Identities=18% Similarity=0.114 Sum_probs=65.0
Q ss_pred EEEccCCCCCCcCchhHHHHHHHHHHHHHHHHHcCCeEEEEcCCCCcChHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhc
Q 046127 92 VLTTPLYYVNAPPHMGSAYTTIAADAIARFQRLLGKKVIFITGTDEHGEKIAAAAADGGSSPSEHCDVVSQAYKTLWKDL 171 (345)
Q Consensus 92 ~I~~~~PypnG~LHIGHar~~i~~DvlaR~lr~~G~~V~~v~G~D~~G~~I~~~A~~~g~~p~~~~~~~~~~~~~~l~~l 171 (345)
++|.-||-|||.|||||+-..-+-==+|+ ..|--++.- +|| ..|+.-.+++...|.+....|
T Consensus 249 V~TRFPPEPNG~LHIGHaKAInvNFgyAk---~~~G~cyLR--fDD-------------TNPEkEee~yf~sI~e~V~WL 310 (764)
T KOG1148|consen 249 VVTRFPPEPNGILHIGHAKAINVNFGYAK---AHGGVCYLR--FDD-------------TNPEKEEEEYFESIKEMVAWL 310 (764)
T ss_pred eEEeCCCCCCceeeecchhheeechhhhh---hhCCeEEEe--cCC-------------CCcchhhHHHHHHHHHHHHHh
Confidence 56788899999999999864322222333 333333221 233 246666678999999999999
Q ss_pred CcccCccccCCChhhHHHHHHHHHHHHhCCCeee
Q 046127 172 DIAYDKFIRTTEPKHEAIVKEFYSSVLANGDIYK 205 (345)
Q Consensus 172 gI~~D~f~~T~~~~~~~~v~~~~~~L~~kG~iy~ 205 (345)
|..+-.. |.++.|-+..-++-..|+++|.+|.
T Consensus 311 G~~P~kv--TysSDyFdqLy~~av~LIrkG~AYV 342 (764)
T KOG1148|consen 311 GFEPYKV--TYSSDYFDQLYELAVELIRKGKAYV 342 (764)
T ss_pred CCCceee--ecchhHHHHHHHHHHHHHhcCceeE
Confidence 9887544 4455667777777788999999994
No 102
>KOG1149 consensus Glutamyl-tRNA synthetase (mitochondrial) [Translation, ribosomal structure and biogenesis]
Probab=97.22 E-value=0.0012 Score=65.25 Aligned_cols=96 Identities=20% Similarity=0.175 Sum_probs=69.5
Q ss_pred EEEccCCCCCCcCchhHHHHHHHHHHHHHHHHHcCCeEEEEcCCCCcChHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhc
Q 046127 92 VLTTPLYYVNAPPHMGSAYTTIAADAIARFQRLLGKKVIFITGTDEHGEKIAAAAADGGSSPSEHCDVVSQAYKTLWKDL 171 (345)
Q Consensus 92 ~I~~~~PypnG~LHIGHar~~i~~DvlaR~lr~~G~~V~~v~G~D~~G~~I~~~A~~~g~~p~~~~~~~~~~~~~~l~~l 171 (345)
+-+.--|.|||.||||-+|+++.--.+|| ...|.=++.+--+|- ..++....+.+.++|+.+
T Consensus 34 VRvRFAPSPTGfLHlGgLRTALfNYLfAr--k~gGkFiLRiEDTDq----------------~R~v~gs~e~i~~~L~w~ 95 (524)
T KOG1149|consen 34 VRVRFAPSPTGFLHLGGLRTALFNYLFAR--KKGGKFILRIEDTDQ----------------KRLIRGSEEAIYEDLKWA 95 (524)
T ss_pred eEEeecCCCCcceehhhHHHHHHHHHHHH--hcCCeEEEEeccccc----------------cccccchHHHHHHHHHhc
Confidence 44445568999999999999999888888 567776666655541 123344467889999999
Q ss_pred CcccCccccC-------CChhhHHHHHHHHHHHHhCCCeee
Q 046127 172 DIAYDKFIRT-------TEPKHEAIVKEFYSSVLANGDIYK 205 (345)
Q Consensus 172 gI~~D~f~~T-------~~~~~~~~v~~~~~~L~~kG~iy~ 205 (345)
||.+|.-+.. -.+...+.-++..++|++.|.+|+
T Consensus 96 nl~~DEgP~~gG~~GPY~QS~R~eiY~kyae~Ll~sG~AYr 136 (524)
T KOG1149|consen 96 NLDWDEGPGVGGPFGPYEQSERLEIYKKYAEKLLESGHAYR 136 (524)
T ss_pred CCCcccCCCcCCCCCchhhHHHHHHHHHHHHHHHhcCCeeE
Confidence 9999943211 123455666777899999999996
No 103
>PLN02563 aminoacyl-tRNA ligase
Probab=96.84 E-value=0.00082 Score=73.91 Aligned_cols=42 Identities=26% Similarity=0.428 Sum_probs=26.9
Q ss_pred hhHhHHHHHHHHhcCCCcccChHHHHHHHHHHhcCCCCcccccCCCCCCcccC
Q 046127 250 LSKYQKLLEDTLTENPDFVQPSFRLNEVQGWIKSGLRDFSISRASVDWGIPVP 302 (345)
Q Consensus 250 l~~~~~~L~e~l~~~~~~~~P~~~~~~~~~wl~~gL~D~~ISR~~~~WGIpvP 302 (345)
...-++.+.++|++....-.| .+| .|+||||||| .+||+|||
T Consensus 479 ~~eA~~~Ii~~L~~~g~~~~~-------v~y---~lrDW~ISRQ-RyWG~PIP 520 (963)
T PLN02563 479 SKEAAKKVIEWLEETGNGKKK-------VNY---KLRDWLFARQ-RYWGEPIP 520 (963)
T ss_pred HHHHHHHHHHHHHhCCCCCCe-------eEe---cCCCceEeee-cccCCceE
Confidence 344556666666654311111 112 4899999999 59999999
No 104
>PRK12285 tryptophanyl-tRNA synthetase; Reviewed
Probab=95.97 E-value=0.065 Score=53.03 Aligned_cols=90 Identities=21% Similarity=0.262 Sum_probs=54.7
Q ss_pred CCCEEEEccCCCCCCcCchhHHHHHHHHHHHHHHHHHcCCeEEEEcCCCCcChHHHHHHHhCCCCHHHHHHHHHHHHHHH
Q 046127 88 ADPFVLTTPLYYVNAPPHMGSAYTTIAADAIARFQRLLGKKVIFITGTDEHGEKIAAAAADGGSSPSEHCDVVSQAYKTL 167 (345)
Q Consensus 88 ~~~~~I~~~~PypnG~LHIGHar~~i~~DvlaR~lr~~G~~V~~v~G~D~~G~~I~~~A~~~g~~p~~~~~~~~~~~~~~ 167 (345)
++++.|.++. -|+|.+||||.. ....+.+++. .|++|++..+ |.|.. ...+.+++++ .++...+..+
T Consensus 64 ~~~~~iytG~-~PSG~lHLGh~~---~~~~~~~lQ~-~g~~~~i~Ia-D~ha~------~~~~~~~e~~-~~~~~~~~~~ 130 (368)
T PRK12285 64 GKPFAVYTGF-MPSGPMHIGHKM---VFDELKWHQE-FGANVYIPIA-DDEAY------AARGLSWEET-REWAYEYILD 130 (368)
T ss_pred CCCeEEEEcc-CCCCCccHHHHH---HHHHHHHHHh-cCCCEEEEec-chHHH------hcCCCCHHHH-HHHHHHHHHH
Confidence 4566666555 467999999964 3555666666 7888766543 44421 1114566654 4445557789
Q ss_pred HhhcCcccC---ccccCCChhhHHHH
Q 046127 168 WKDLDIAYD---KFIRTTEPKHEAIV 190 (345)
Q Consensus 168 l~~lgI~~D---~f~~T~~~~~~~~v 190 (345)
+.++|++.+ .|..+..+.|.+.+
T Consensus 131 ~lA~G~Dp~k~~i~~qS~~~~~~~l~ 156 (368)
T PRK12285 131 LIALGFDPDKTEIYFQSENIKVYDLA 156 (368)
T ss_pred HHHhCCCccceEEEECCchHHHHHHH
Confidence 999999987 23333334444443
No 105
>PLN02486 aminoacyl-tRNA ligase
Probab=95.79 E-value=0.12 Score=51.30 Aligned_cols=78 Identities=14% Similarity=0.049 Sum_probs=50.0
Q ss_pred CCCCEEEEccCCCCCCc-CchhHHHHHHHHHHHHHHHHHcCCeEEEEcCCCCcChHHHHHHHhCCCCHHHHHHHHHHHHH
Q 046127 87 PADPFVLTTPLYYVNAP-PHMGSAYTTIAADAIARFQRLLGKKVIFITGTDEHGEKIAAAAADGGSSPSEHCDVVSQAYK 165 (345)
Q Consensus 87 ~~~~~~I~~~~PypnG~-LHIGHar~~i~~DvlaR~lr~~G~~V~~v~G~D~~G~~I~~~A~~~g~~p~~~~~~~~~~~~ 165 (345)
.+++++|.++. -|+|+ +||||. +....+..+++..|..+... -.|+ +....+ +.+.+++ .++..+..
T Consensus 70 ~~~~~~vYtG~-~PSg~~lHlGHl---v~~~~~~~lQ~~~~~~~~I~-iaD~-----e~~~~~-~~~~e~i-~~~~~en~ 137 (383)
T PLN02486 70 KGEKFYLYTGR-GPSSEALHLGHL---IPFMFTKYLQDAFKVPLVIQ-LTDD-----EKFLWK-NLSVEES-QRLARENA 137 (383)
T ss_pred cCCCeEEEeCC-CCCCccccHHHH---HHHHHHHHHHHhCCCeEEEE-ecCH-----HHHhhc-CCCHHHH-HHHHHHHH
Confidence 35677777766 68895 999995 44555555555556655555 3343 333333 4666654 45556677
Q ss_pred HHHhhcCcccC
Q 046127 166 TLWKDLDIAYD 176 (345)
Q Consensus 166 ~~l~~lgI~~D 176 (345)
+++.++|++++
T Consensus 138 ~~iiA~G~dp~ 148 (383)
T PLN02486 138 KDIIACGFDVE 148 (383)
T ss_pred HHHHHhCCCCc
Confidence 78888999887
No 106
>PRK12284 tryptophanyl-tRNA synthetase; Reviewed
Probab=94.60 E-value=0.22 Score=50.17 Aligned_cols=93 Identities=16% Similarity=0.262 Sum_probs=55.9
Q ss_pred CCCCcCchhHHHHHHHHHHHHHHHHHcCCeEEEEcCCCCcChHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhcCcccC--
Q 046127 99 YVNAPPHMGSAYTTIAADAIARFQRLLGKKVIFITGTDEHGEKIAAAAADGGSSPSEHCDVVSQAYKTLWKDLDIAYD-- 176 (345)
Q Consensus 99 ypnG~LHIGHar~~i~~DvlaR~lr~~G~~V~~v~G~D~~G~~I~~~A~~~g~~p~~~~~~~~~~~~~~l~~lgI~~D-- 176 (345)
-|+|.|||||..+++-- ..+.+...|+++++.. .|.|-.- ...+|.++.+. ..++..++-+.|++++
T Consensus 10 qPTG~lHLGNylGaik~--~v~lq~q~~~~~~~~I-ADlHAlT-------~~~dp~~lr~~-~~e~aa~~LA~GlDPek~ 78 (431)
T PRK12284 10 TTTGTPHLGNYAGAIRP--AIAASRQPGVESFYFL-ADYHALI-------KCDDPARIQRS-TLEIAATWLAAGLDPERV 78 (431)
T ss_pred cCCCcchHHHHHHHHHH--HHHHHHhCCCcEEEEe-echhhcc-------CCCCHHHHHHH-HHHHHHHHHHhCCCccce
Confidence 57899999997666542 3344445688876643 3444321 23466655544 4558889999999997
Q ss_pred ccccCC-ChhhHHHHHHHHHHHHhCCCe
Q 046127 177 KFIRTT-EPKHEAIVKEFYSSVLANGDI 203 (345)
Q Consensus 177 ~f~~T~-~~~~~~~v~~~~~~L~~kG~i 203 (345)
.++.-+ -+.|.+. .|++..+-..|.+
T Consensus 79 ~if~QSdvpeh~EL-~wiL~~it~~g~L 105 (431)
T PRK12284 79 TFYRQSDIPEIPEL-TWLLTCVAGKGLL 105 (431)
T ss_pred EEEECCcchhHHHH-HHHHHhhhhHHHH
Confidence 344444 4555444 5555544444443
No 107
>cd00395 Tyr_Trp_RS_core catalytic core domain of tyrosinyl-tRNA and tryptophanyl-tRNA synthetase. Tyrosinyl-tRNA synthetase (TyrRS)/Tryptophanyl-tRNA synthetase (TrpRS) catalytic core domain. These enzymes attach Tyr or Trp, respectively, to the appropriate tRNA. These class I enzymes are homodimers, which aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=94.50 E-value=0.14 Score=48.60 Aligned_cols=71 Identities=18% Similarity=0.251 Sum_probs=42.9
Q ss_pred CCCC-cCchhHHHHHHHHHHHHHHHHHcCCeEEEEcCCCC--cChHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhcCcc
Q 046127 99 YVNA-PPHMGSAYTTIAADAIARFQRLLGKKVIFITGTDE--HGEKIAAAAADGGSSPSEHCDVVSQAYKTLWKDLDIA 174 (345)
Q Consensus 99 ypnG-~LHIGHar~~i~~DvlaR~lr~~G~~V~~v~G~D~--~G~~I~~~A~~~g~~p~~~~~~~~~~~~~~l~~lgI~ 174 (345)
-|+| .|||||..+ ...+.++++ .|++++++.|-.+ .|.+.-...++...+++ .+.++...+.+++.++|++
T Consensus 7 ~PTg~~lHlGh~~~---l~~~~~lq~-~g~~~~~~I~d~~a~~~d~sg~~~~r~~~~~~-~i~~n~~~~~~~~~a~g~d 80 (273)
T cd00395 7 DPTADSLHIGHLIG---LLTFRRFQH-AGHRPIFLIGGQTGIIGDPSGKKSERTLNDPE-EVRQNIRRIAAQYLAVGIF 80 (273)
T ss_pred cCCCCCccHHHHHH---HHHHHHHHH-CCCCEEEEEecCceeeCCCCCccccccCCCHH-HHHHHHHHHHHHHHHhcCc
Confidence 4779 699999765 445556554 6899887665211 12221111112222444 4555678899999999998
No 108
>PLN02886 aminoacyl-tRNA ligase
Probab=94.16 E-value=0.2 Score=49.86 Aligned_cols=90 Identities=17% Similarity=0.202 Sum_probs=53.6
Q ss_pred EEEEccCCCCCCcCchhHHHHHHHHHHHHHHHHHcCCeEEEEcCCCCcChHHHHHHHhCCCCHHHHHHHHHHHHHHHHhh
Q 046127 91 FVLTTPLYYVNAPPHMGSAYTTIAADAIARFQRLLGKKVIFITGTDEHGEKIAAAAADGGSSPSEHCDVVSQAYKTLWKD 170 (345)
Q Consensus 91 ~~I~~~~PypnG~LHIGHar~~i~~DvlaR~lr~~G~~V~~v~G~D~~G~~I~~~A~~~g~~p~~~~~~~~~~~~~~l~~ 170 (345)
.+++.. -|+|.+||||..+++ .-+..+++ |+++++ +=.|.|-.- ...+++++. ++...+..++-+
T Consensus 48 ~v~sGi--qPSG~lHLGnylGai--~~~v~lQ~--~~~~~~-~IADlHAlt-------~~~~~~~lr-~~~~~~~a~~lA 112 (389)
T PLN02886 48 RVVSGV--QPTGSIHLGNYLGAI--KNWVALQE--TYDTFF-CVVDLHAIT-------LPHDPRELG-KATRSTAAIYLA 112 (389)
T ss_pred eEEEEE--CCCCccHHHHHHHHH--HHHHHHhc--cCCEEE-EEecHHHhh-------CCCCHHHHH-HHHHHHHHHHHH
Confidence 344444 466999999977665 34444554 788754 345555321 233666544 444567889999
Q ss_pred cCcccC---ccccCCChhhHHHHHHHHHH
Q 046127 171 LDIAYD---KFIRTTEPKHEAIVKEFYSS 196 (345)
Q Consensus 171 lgI~~D---~f~~T~~~~~~~~v~~~~~~ 196 (345)
+|++++ .|..+..+.|.+. -+++..
T Consensus 113 ~GlDP~ks~if~QS~v~e~~eL-~wil~~ 140 (389)
T PLN02886 113 CGIDPSKASVFVQSHVPAHAEL-MWLLSC 140 (389)
T ss_pred cCcCccceEEEEeCCCchhHHH-HHHHHh
Confidence 999997 3444444555443 334433
No 109
>PRK13354 tyrosyl-tRNA synthetase; Provisional
Probab=94.06 E-value=0.16 Score=51.10 Aligned_cols=81 Identities=15% Similarity=0.206 Sum_probs=47.8
Q ss_pred CCEEEEccCCCCCCc-CchhHHHHHHHHHHHHHHHHHcCCeEEEEcCCCC--cChHHHHHHHhCCCCHHHHHHHHHHHHH
Q 046127 89 DPFVLTTPLYYVNAP-PHMGSAYTTIAADAIARFQRLLGKKVIFITGTDE--HGEKIAAAAADGGSSPSEHCDVVSQAYK 165 (345)
Q Consensus 89 ~~~~I~~~~PypnG~-LHIGHar~~i~~DvlaR~lr~~G~~V~~v~G~D~--~G~~I~~~A~~~g~~p~~~~~~~~~~~~ 165 (345)
+++.|.++. -|||+ |||||+.+ .-.+.++ ...|++++++.|-.+ .|+|--...++...+.+++. ++...++
T Consensus 32 ~~~~iy~G~-dPT~~sLHlGhlv~---l~~l~~l-q~~G~~~~~ligd~ta~igDpsgk~~~R~~l~~e~i~-~n~~~i~ 105 (410)
T PRK13354 32 KPLTLYLGF-DPTAPSLHIGHLVP---LMKLKRF-QDAGHRPVILIGGFTGKIGDPSGKSKERKLLTDEQVQ-HNAKTYT 105 (410)
T ss_pred CCcEEEEcc-cCCCCCcchhhHHH---HHHHHHH-HHcCCeEEEEEcccccccCCCCcccccccCCCHHHHH-HHHHHHH
Confidence 445555554 57885 99999554 3345555 457999988776443 45544333334445555544 4556777
Q ss_pred HHHhhcCcccC
Q 046127 166 TLWKDLDIAYD 176 (345)
Q Consensus 166 ~~l~~lgI~~D 176 (345)
.++.+ +++++
T Consensus 106 ~q~~~-~ld~~ 115 (410)
T PRK13354 106 EQIFK-LFDFE 115 (410)
T ss_pred HHHHH-hcCcc
Confidence 76666 55544
No 110
>PRK08560 tyrosyl-tRNA synthetase; Validated
Probab=94.04 E-value=0.3 Score=47.56 Aligned_cols=74 Identities=19% Similarity=0.183 Sum_probs=44.8
Q ss_pred CEEEEccCCCCCCcCchhHHHHHHHHHHHHHHHHHcCCeEEEEcCCCCcChHHHHHHHhCCCCHHHHHHHHHHHHHHHHh
Q 046127 90 PFVLTTPLYYVNAPPHMGSAYTTIAADAIARFQRLLGKKVIFITGTDEHGEKIAAAAADGGSSPSEHCDVVSQAYKTLWK 169 (345)
Q Consensus 90 ~~~I~~~~PypnG~LHIGHar~~i~~DvlaR~lr~~G~~V~~v~G~D~~G~~I~~~A~~~g~~p~~~~~~~~~~~~~~l~ 169 (345)
++.|.++. -|+|.+||||.. ..-.+.++++ .|++|++..+ |.|..-.. ..++++ +..+...+..++.
T Consensus 30 ~~~v~~G~-~PTG~lHLG~~~---~~~~~~~lq~-~g~~~~i~Ia-D~ha~~~~------~~~~~~-i~~~~~~~~~~~~ 96 (329)
T PRK08560 30 EPKAYIGF-EPSGKIHLGHLL---TMNKLADLQK-AGFKVTVLLA-DWHAYLND------KGDLEE-IRKVAEYNKKVFE 96 (329)
T ss_pred CCEEEEcc-CCCCcchhhhhH---HHHHHHHHHH-CCCeEEEEEc-cchhhcCC------CCCHHH-HHHHHHHHHHHHH
Confidence 33333333 567999999955 3334666665 5888766543 33332110 134444 4555567888999
Q ss_pred hcCcccC
Q 046127 170 DLDIAYD 176 (345)
Q Consensus 170 ~lgI~~D 176 (345)
++|++.+
T Consensus 97 A~G~dp~ 103 (329)
T PRK08560 97 ALGLDPD 103 (329)
T ss_pred HcCCChh
Confidence 9999876
No 111
>TIGR00233 trpS tryptophanyl-tRNA synthetase. This model represents tryptophanyl-tRNA synthetase. Some members of the family have a pfam00458 domain amino-terminal to the region described by this model.
Probab=93.98 E-value=0.28 Score=47.80 Aligned_cols=88 Identities=13% Similarity=0.205 Sum_probs=49.3
Q ss_pred EEEccCCCCCCcCchhHHHHHHHHHHHHHHHHHcCCeEEEEcCCCCcChHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhc
Q 046127 92 VLTTPLYYVNAPPHMGSAYTTIAADAIARFQRLLGKKVIFITGTDEHGEKIAAAAADGGSSPSEHCDVVSQAYKTLWKDL 171 (345)
Q Consensus 92 ~I~~~~PypnG~LHIGHar~~i~~DvlaR~lr~~G~~V~~v~G~D~~G~~I~~~A~~~g~~p~~~~~~~~~~~~~~l~~l 171 (345)
.|.++. -|+|.+||||..+++..-+. ...|++|.+..+ |.|..-. ..+.+++ ........+..++-++
T Consensus 4 ~v~~G~-~PTG~~HlG~~l~~~~~~~~----~q~~~~~~i~Ia-D~ha~t~-----~~~~~~~-~~~~~~~~~~~~~lA~ 71 (328)
T TIGR00233 4 RVLTGI-QPSGKMHLGHYLGAIQTKWL----QQFGVELFICIA-DLHAITV-----KDNTDPD-ALRKAREELAADILAV 71 (328)
T ss_pred EEEEee-CCCcHhHHHHHHHHHHHHHH----HhCCCCEEEEee-cchhhcC-----CCCCCHH-HHHHHHHHHHHHHHHh
Confidence 333333 57799999997666544332 356888876543 3342111 0111333 3345556667788899
Q ss_pred CcccC--c-cccCCChhhHHHHH
Q 046127 172 DIAYD--K-FIRTTEPKHEAIVK 191 (345)
Q Consensus 172 gI~~D--~-f~~T~~~~~~~~v~ 191 (345)
|+++| . |..+.-+.|.+.+.
T Consensus 72 GlDp~k~~if~qS~~~e~~el~~ 94 (328)
T TIGR00233 72 GLDPKKTFIFLQSDYPEHYELAW 94 (328)
T ss_pred CcChhheEEEEcCCcHHHHHHHH
Confidence 99998 3 33333355555443
No 112
>cd00806 TrpRS_core catalytic core domain of tryptophanyl-tRNA synthetase. Tryptophanyl-tRNA synthetase (TrpRS) catalytic core domain. TrpRS is a homodimer which attaches Tyr to the appropriate tRNA. TrpRS is a class I tRNA synthetases, so it aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding
Probab=93.82 E-value=0.27 Score=46.79 Aligned_cols=80 Identities=14% Similarity=0.184 Sum_probs=47.9
Q ss_pred CCCCcCchhHHHHHHHHHHHHHHHHHcCCeEEEEcCCCCcChHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhcCcccC--
Q 046127 99 YVNAPPHMGSAYTTIAADAIARFQRLLGKKVIFITGTDEHGEKIAAAAADGGSSPSEHCDVVSQAYKTLWKDLDIAYD-- 176 (345)
Q Consensus 99 ypnG~LHIGHar~~i~~DvlaR~lr~~G~~V~~v~G~D~~G~~I~~~A~~~g~~p~~~~~~~~~~~~~~l~~lgI~~D-- 176 (345)
-|+|.|||||..+++.. +.+++ ..|+++++..+ |.|..- ....+++ -+.++...+.+++.++|++++
T Consensus 7 ~PTG~lHLG~~~~al~~--~~~lQ-~ag~~~~~~Ia-D~ha~t------~~~~~~~-~~~~~~~~~~~~~lA~G~dp~k~ 75 (280)
T cd00806 7 QPSGSLHLGHYLGAFRF--WVWLQ-EAGYELFFFIA-DLHALT------VKQLDPE-ELRQNTRENAKDYLACGLDPEKS 75 (280)
T ss_pred CCCchhhHHHHHHHHHH--HHHHH-hCCCCEEEEec-chHHHh------CCCCCHH-HHHHHHHHHHHHHHHcCCCcccC
Confidence 47799999998774432 33333 34888876543 344321 1113454 455666778889999999986
Q ss_pred -ccccCCChhhHHH
Q 046127 177 -KFIRTTEPKHEAI 189 (345)
Q Consensus 177 -~f~~T~~~~~~~~ 189 (345)
.|..+.-+.|.+.
T Consensus 76 ~i~~qS~~~~~~~l 89 (280)
T cd00806 76 TIFFQSDVPEHYEL 89 (280)
T ss_pred EEEEcCCcHHHHHH
Confidence 2333433444444
No 113
>COG0180 TrpS Tryptophanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=93.75 E-value=0.48 Score=45.83 Aligned_cols=89 Identities=13% Similarity=0.156 Sum_probs=55.2
Q ss_pred CCEEEEccCCCCCCcCchhHHHHHHHHHHHHHHHHHcC-CeEEEEcCCCCcChHHHHHHHhCCCCHHHHHHHHHHHHHHH
Q 046127 89 DPFVLTTPLYYVNAPPHMGSAYTTIAADAIARFQRLLG-KKVIFITGTDEHGEKIAAAAADGGSSPSEHCDVVSQAYKTL 167 (345)
Q Consensus 89 ~~~~I~~~~PypnG~LHIGHar~~i~~DvlaR~lr~~G-~~V~~v~G~D~~G~~I~~~A~~~g~~p~~~~~~~~~~~~~~ 167 (345)
+..+++.. -|+|.|||||..+++. .+++...+ +++++.. .|.|..- ..+..+++-......++..+
T Consensus 5 ~~~vlSG~--~PSG~lHLGny~ga~~----~~v~~q~~~~~~f~~I-aDlha~t------~~~~~~~~~l~~~~~e~~a~ 71 (314)
T COG0180 5 KFRVLSGI--QPSGKLHLGNYLGAIR----NWVLLQEEYYECFFFI-ADLHAIT------VRQDPTEEDLRQATREVAAD 71 (314)
T ss_pred CceEEecC--CCCCCcchhHhHHHHH----HHHHHhcccCceEEEE-ecHHHhh------cCCCChHHHHHHHHHHHHHH
Confidence 34445544 4679999999876644 34444455 3665433 4555321 12333445566777788889
Q ss_pred HhhcCcccC---ccccCCChhhHHHH
Q 046127 168 WKDLDIAYD---KFIRTTEPKHEAIV 190 (345)
Q Consensus 168 l~~lgI~~D---~f~~T~~~~~~~~v 190 (345)
+-++||+++ .|..+.-+.|.+..
T Consensus 72 ~LA~GiDP~k~~if~QS~v~e~~eLa 97 (314)
T COG0180 72 YLAVGLDPEKSTIFLQSEVPEHAELA 97 (314)
T ss_pred HHHhccCccccEEEEccCchHHHHHH
Confidence 999999998 46655566666554
No 114
>cd00805 TyrRS_core catalytic core domain of tyrosinyl-tRNA synthetase. Tyrosinyl-tRNA synthetase (TyrRS) catalytic core domain. TyrRS is a homodimer which attaches Tyr to the appropriate tRNA. TyrRS is a class I tRNA synthetases, so it aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formationof the enzyme bound aminoacyl-adenylate. It contains the class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=92.72 E-value=0.19 Score=47.56 Aligned_cols=71 Identities=18% Similarity=0.161 Sum_probs=45.2
Q ss_pred CCCC-cCchhHHHHHHHHHHHHHHHHHcCCeEEEEcCCCC--cChHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhcCcc
Q 046127 99 YVNA-PPHMGSAYTTIAADAIARFQRLLGKKVIFITGTDE--HGEKIAAAAADGGSSPSEHCDVVSQAYKTLWKDLDIA 174 (345)
Q Consensus 99 ypnG-~LHIGHar~~i~~DvlaR~lr~~G~~V~~v~G~D~--~G~~I~~~A~~~g~~p~~~~~~~~~~~~~~l~~lgI~ 174 (345)
-|+| .+||||..+. ..+.+++++ |++|++..|-.+ .|.+.-...++.+.++++ ..++...+.+++.++|.+
T Consensus 8 ~PTg~~lHLG~~~~~---~~~~~lq~~-g~~~~ilI~D~~a~~~~~~~~~~~r~~~~~~~-i~~~~~~~~~~~~a~g~~ 81 (269)
T cd00805 8 DPTAPSLHLGHLVPL---MKLRDFQQA-GHEVIVLIGDATAMIGDPSGKSEERKLLDLEL-IRENAKYYKKQLKAILDF 81 (269)
T ss_pred CCCCCcccHHHHHHH---HHHHHHHHC-CCeEEEEECCCeeecCCCCCccccccCCCHHH-HHHHHHHHHHHHHHHHcc
Confidence 4779 8999997653 467777775 999877655322 122221222233456654 455667788999999985
No 115
>PRK05912 tyrosyl-tRNA synthetase; Validated
Probab=92.71 E-value=0.42 Score=48.04 Aligned_cols=77 Identities=19% Similarity=0.247 Sum_probs=43.9
Q ss_pred CCEEEEccCCCCCCc-CchhHHHHHHHHHHHHHHHHHcCCeEEEEcCC------CCcChHHHHHHHhCCCCHHHHHHHHH
Q 046127 89 DPFVLTTPLYYVNAP-PHMGSAYTTIAADAIARFQRLLGKKVIFITGT------DEHGEKIAAAAADGGSSPSEHCDVVS 161 (345)
Q Consensus 89 ~~~~I~~~~PypnG~-LHIGHar~~i~~DvlaR~lr~~G~~V~~v~G~------D~~G~~I~~~A~~~g~~p~~~~~~~~ 161 (345)
+++.|.++. -|||+ |||||..+ ...+.++++ .|++++++.|- |..|... +....+.+ .+..+.
T Consensus 32 ~~~~vy~G~-dPTg~slHlGhlv~---l~~l~~lQ~-~G~~~~~ligd~ta~igDpsgk~~----~r~~l~~e-~i~~n~ 101 (408)
T PRK05912 32 EPLRIYLGF-DPTAPSLHLGHLVP---LLKLRRFQD-AGHKPIALIGGFTGMIGDPSGKSE----TRKLLTRE-QVAENA 101 (408)
T ss_pred CCCEEEEee-cCCCCCccHHhHHH---HHHHHHHHH-CCCcEEEEEcCceeEcCCCCCCch----hhccCCHH-HHHHHH
Confidence 334444444 57795 99999763 455666654 69998876543 3333222 22233433 444556
Q ss_pred HHHHHHHhhcCcccC
Q 046127 162 QAYKTLWKDLDIAYD 176 (345)
Q Consensus 162 ~~~~~~l~~lgI~~D 176 (345)
..+++++ +.++++|
T Consensus 102 ~~i~~ql-~~~ld~~ 115 (408)
T PRK05912 102 ETIKEQL-FKFLDFE 115 (408)
T ss_pred HHHHHHH-HHhcCcC
Confidence 6677776 5555554
No 116
>PRK06266 transcription initiation factor E subunit alpha; Validated
Probab=92.55 E-value=0.22 Score=44.36 Aligned_cols=61 Identities=20% Similarity=0.183 Sum_probs=41.5
Q ss_pred CeeecccCcccccCCCCccchhhhhc-CCcCCCCCCCceEeeccccccchhHhHHHHHHHHh
Q 046127 202 DIYKADYEGLYCVNCEEYKDEKELLE-NQCCPIHLKPCVARKEDNYFFALSKYQKLLEDTLT 262 (345)
Q Consensus 202 ~iy~~~~~~~yc~~c~~~l~d~el~~-~~~c~~~~~pve~r~~~~~f~~l~~~~~~L~e~l~ 262 (345)
+-++.+...|.||.|+.-++-.|..+ +..|+.||.+++........-.|.+--++|.+.+.
T Consensus 109 l~~e~~~~~Y~Cp~C~~rytf~eA~~~~F~Cp~Cg~~L~~~dn~~~~~~l~~~I~~l~~~~~ 170 (178)
T PRK06266 109 LEEEENNMFFFCPNCHIRFTFDEAMEYGFRCPQCGEMLEEYDNSELIKELKEQIKELEEELK 170 (178)
T ss_pred hhhccCCCEEECCCCCcEEeHHHHhhcCCcCCCCCCCCeecccHHHHHHHHHHHHHHHHHhc
Confidence 45666777888999998888777665 36699999998876554444444444444444443
No 117
>PTZ00126 tyrosyl-tRNA synthetase; Provisional
Probab=92.53 E-value=0.69 Score=46.08 Aligned_cols=78 Identities=13% Similarity=0.164 Sum_probs=45.4
Q ss_pred CCEEEEccCCCCCCcCchhHHHHHHHHHHHHHHHHHcCCeEEEEcCCCCcChHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Q 046127 89 DPFVLTTPLYYVNAPPHMGSAYTTIAADAIARFQRLLGKKVIFITGTDEHGEKIAAAAADGGSSPSEHCDVVSQAYKTLW 168 (345)
Q Consensus 89 ~~~~I~~~~PypnG~LHIGHar~~i~~DvlaR~lr~~G~~V~~v~G~D~~G~~I~~~A~~~g~~p~~~~~~~~~~~~~~l 168 (345)
+++.|.++. -|+|.+|||| .++..--+.++ ...|++|.+..+ |-|..-. ...|.+++++ ......+.+.+
T Consensus 65 ~~~~v~~G~-~PTG~lHLG~--g~i~~~~~~~l-q~~G~~v~~~Ia-D~hA~~~----~~~g~~l~~i-~~~~~~~~~~~ 134 (383)
T PTZ00126 65 ERPICYDGF-EPSGRMHIAQ--GILKAINVNKL-TKAGCVFVFWVA-DWFALLN----NKMGGDLEKI-RKVGEYFIEVW 134 (383)
T ss_pred CCCEEEEEE-CCCCcccccc--hHhHhHHHHHH-HhCCCeEEEEEc-cceeecC----CCCCCCHHHH-HHHHHHHHHHH
Confidence 333333333 4779999999 22222333444 355899887543 2332111 1234455554 55667788889
Q ss_pred hhcCcccC
Q 046127 169 KDLDIAYD 176 (345)
Q Consensus 169 ~~lgI~~D 176 (345)
.++|++.+
T Consensus 135 ~A~GlDp~ 142 (383)
T PTZ00126 135 KAAGMDMD 142 (383)
T ss_pred HHhCCCcc
Confidence 99999987
No 118
>PF01927 Mut7-C: Mut7-C RNAse domain; InterPro: IPR002782 This prokaryotic family of proteins have no known function. The proteins contain four conserved cysteines that may be involved in metal binding or disulphide bridges.
Probab=92.09 E-value=0.37 Score=41.34 Aligned_cols=31 Identities=32% Similarity=0.598 Sum_probs=24.4
Q ss_pred HHHHHHHcCCeEEEEcCCCCcChHHHHHHHhCC
Q 046127 118 IARFQRLLGKKVIFITGTDEHGEKIAAAAADGG 150 (345)
Q Consensus 118 laR~lr~~G~~V~~v~G~D~~G~~I~~~A~~~g 150 (345)
++|+||+.|++|.+..+.+ +..|...|.+++
T Consensus 12 Lar~LR~lG~Dt~~~~~~~--D~~il~~A~~e~ 42 (147)
T PF01927_consen 12 LARWLRLLGYDTLYSRDID--DDEILELAREEG 42 (147)
T ss_pred HHHHHHHCCCcEEEeCCCC--hHHHHHHhhhCC
Confidence 6899999999999988664 456667776655
No 119
>PF00579 tRNA-synt_1b: tRNA synthetases class I (W and Y); InterPro: IPR002305 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. The class Ia aminoacyl-tRNA synthetases consist of the isoleucyl, methionyl, valyl, leucyl, cysteinyl, and arginyl-tRNA synthetases; the class Ib include the glutamyl and glutaminyl-tRNA synthetases, and the class Ic are the tyrosyl and tryptophanyl-tRNA synthetases [].; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 2JAN_A 3P0J_B 3P0I_B 3P0H_B 1YID_C 2A4M_C 1YIA_C 1YI8_C 2EL7_A 3PRH_A ....
Probab=90.98 E-value=0.71 Score=43.98 Aligned_cols=77 Identities=16% Similarity=0.150 Sum_probs=41.5
Q ss_pred CCEEEEccCCCCCCcCchhHHHHHHHHHHHHHHHHHcCCeEEEEcCCCCcChHHHHHHHhCCCCHHHHHHHHHHHHHHH-
Q 046127 89 DPFVLTTPLYYVNAPPHMGSAYTTIAADAIARFQRLLGKKVIFITGTDEHGEKIAAAAADGGSSPSEHCDVVSQAYKTL- 167 (345)
Q Consensus 89 ~~~~I~~~~PypnG~LHIGHar~~i~~DvlaR~lr~~G~~V~~v~G~D~~G~~I~~~A~~~g~~p~~~~~~~~~~~~~~- 167 (345)
+++.|.++. -|+|.|||||..+. ..+.++++ .|++|.+..|-. |+ ......+.+++ ........+...
T Consensus 4 ~~~~~y~G~-~PTg~lHlG~l~~~---~~~~~lq~-~g~~~~i~iaD~-~a----~~~~~~~~~~~-~~~~~~~~~~~~~ 72 (292)
T PF00579_consen 4 KPFRVYTGI-DPTGDLHLGHLVPI---MKLIWLQK-AGFKVIILIADL-HA----LLGDPSKGDER-KIRSRAEYNINDK 72 (292)
T ss_dssp SSEEEEEEE-ESSSS-BHHHHHHH---HHHHHHHH-TTSEEEEEEEHH-HH----HHTTTTGSSHH-HHHHHHHHHHHHH
T ss_pred CCcEEEEeE-CCCCcccchHHHHH---HHHHHHHh-cCCccceEecch-hh----cccCcccccHH-HHHHHHHHHHHHH
Confidence 445555554 47799999988765 34445544 899998876532 11 00011111222 233344444444
Q ss_pred -HhhcCcccC
Q 046127 168 -WKDLDIAYD 176 (345)
Q Consensus 168 -l~~lgI~~D 176 (345)
+-++|++.+
T Consensus 73 ~~la~g~d~~ 82 (292)
T PF00579_consen 73 AILALGLDPE 82 (292)
T ss_dssp HHHHTTSHTT
T ss_pred HHHHhccCcc
Confidence 678998875
No 120
>PRK00927 tryptophanyl-tRNA synthetase; Reviewed
Probab=90.84 E-value=0.8 Score=44.72 Aligned_cols=65 Identities=15% Similarity=0.143 Sum_probs=41.5
Q ss_pred CCCCcCchhHHHHHHHHHHHHHHHHHcCCeEEEEcCCCCcChHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhcCcccC
Q 046127 99 YVNAPPHMGSAYTTIAADAIARFQRLLGKKVIFITGTDEHGEKIAAAAADGGSSPSEHCDVVSQAYKTLWKDLDIAYD 176 (345)
Q Consensus 99 ypnG~LHIGHar~~i~~DvlaR~lr~~G~~V~~v~G~D~~G~~I~~~A~~~g~~p~~~~~~~~~~~~~~l~~lgI~~D 176 (345)
-|+|.+||||..+.+. -+.+++.. ++|.+..+ |.|-.- ...++++ +..+...+..++-++|++++
T Consensus 9 ~PTG~lHLG~~~g~~~--~~~~lQ~~--~~~~~~Ia-D~ha~t-------~~~~~~~-i~~~~~~~~~~~lA~GlDp~ 73 (333)
T PRK00927 9 QPTGKLHLGNYLGAIK--NWVELQDE--YECFFCIA-DLHALT-------VPQDPEE-LRENTRELAADYLACGIDPE 73 (333)
T ss_pred CCCccchHHhHHHHHH--HHHHHHhc--CCeEEEEe-cHHHHh-------CCCCHHH-HHHHHHHHHHHHHeEccChh
Confidence 4679999999887653 35556553 77766553 333211 1225554 44455668888999999987
No 121
>KOG0435 consensus Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=90.47 E-value=0.07 Score=55.84 Aligned_cols=60 Identities=27% Similarity=0.491 Sum_probs=40.9
Q ss_pred cCCCCcccccCCCCCCcccCC----C------------------------------------------------CCCcEE
Q 046127 283 SGLRDFSISRASVDWGIPVPN----D------------------------------------------------NKQTIY 310 (345)
Q Consensus 283 ~gL~D~~ISR~~~~WGIpvP~----~------------------------------------------------~~~~iy 310 (345)
..|+||-|||| .+||.|||. + +..+++
T Consensus 417 ~kLkDWLiSRQ-RyWGTPIPivhc~~cG~vpVpes~LPV~LP~l~~~~~kG~Pls~~~e~vn~~cP~cg~pAkRETDTMD 495 (876)
T KOG0435|consen 417 YKLKDWLISRQ-RYWGTPIPIVHCDDCGAVPVPESELPVTLPELNDFTPKGPPLSKADEWVNVDCPRCGEPAKRETDTMD 495 (876)
T ss_pred chhhhhhhhhh-hccCCCcceEEcCCCCcccCcHHHCCcccccccccCCCCCcccchhhheeccCccCCCcccccccccc
Confidence 46899999999 599999982 0 257899
Q ss_pred EecCchhHHHHhcCCCCCCCchhhhhhC-cCCCC
Q 046127 311 VWFDALLGYISALSEDRDQPSLRTAVSS-GWPAS 343 (345)
Q Consensus 311 VWfdal~gYls~~~~~~~~~~~~~~~~~-~w~~~ 343 (345)
+|+|+-+=|+-.+..-...-+.+....+ +.|-|
T Consensus 496 TFvDSsWYYlRylDpkN~e~~~d~a~a~k~MPVD 529 (876)
T KOG0435|consen 496 TFVDSSWYYLRYLDPKNPEEPFDKAKAKKNMPVD 529 (876)
T ss_pred hhhccceeeEeecCCCCcccccchhhhhccCcee
Confidence 9999998888777643322233344333 34544
No 122
>PRK12556 tryptophanyl-tRNA synthetase; Provisional
Probab=89.84 E-value=2.3 Score=41.53 Aligned_cols=93 Identities=15% Similarity=0.257 Sum_probs=52.6
Q ss_pred CEEEEccCCCCCCcCchhHHHHHHHHHHHHHHHHHcCCeEEEEcCCCCcChHHHHHHHhCCCCHHHHHHHHHHHHHHHHh
Q 046127 90 PFVLTTPLYYVNAPPHMGSAYTTIAADAIARFQRLLGKKVIFITGTDEHGEKIAAAAADGGSSPSEHCDVVSQAYKTLWK 169 (345)
Q Consensus 90 ~~~I~~~~PypnG~LHIGHar~~i~~DvlaR~lr~~G~~V~~v~G~D~~G~~I~~~A~~~g~~p~~~~~~~~~~~~~~l~ 169 (345)
+.+++..- |+|.+||||..+++-- ..+.+...|.++++.. .|.|-. ....+++++ .++......++-
T Consensus 4 ~~v~sGiq--PTG~~HLGnylga~k~--~~~lq~~~~~~~~~~I-ADlHal-------t~~~~~~~l-~~~~~~~~~~~l 70 (332)
T PRK12556 4 KIMLTGIK--PTGYPHLGNYIGAIKP--ALQMAKNYEGKALYFI-ADYHAL-------NAVHDPEQF-RSYTREVAATWL 70 (332)
T ss_pred CEEEEEEC--CCCcchHHHHHHHHHH--HHHHHHhcCCeEEEEE-echhhc-------cCCCCHHHH-HHHHHHHHHHHh
Confidence 34555554 5699999997665442 2233445566666543 344431 112366654 444556778888
Q ss_pred hcCcccC---ccccCCChhhHHHHHHHHHH
Q 046127 170 DLDIAYD---KFIRTTEPKHEAIVKEFYSS 196 (345)
Q Consensus 170 ~lgI~~D---~f~~T~~~~~~~~v~~~~~~ 196 (345)
+.|++++ .|..+.-+.|.+.. +++..
T Consensus 71 A~GlDP~k~~if~qS~v~~~~eL~-~il~~ 99 (332)
T PRK12556 71 SLGLDPEDVIFYRQSDVPEIFELA-WILSC 99 (332)
T ss_pred heeecccceEEEECCCchHHHHHH-HHHHc
Confidence 9999997 34444445555433 34443
No 123
>TIGR00234 tyrS tyrosyl-tRNA synthetase. This tyrosyl-tRNA synthetase model starts picking up tryptophanyl-tRNA synthetases at scores of 0 and below. The proteins found by this model have a deep split between two groups. One group contains bacterial and organellar eukaryotic examples. The other contains archaeal and cytosolic eukaryotic examples.
Probab=88.70 E-value=1.1 Score=44.69 Aligned_cols=78 Identities=17% Similarity=0.191 Sum_probs=40.8
Q ss_pred EEEccCCCCCC-cCchhHHHHHHHHHHHHHHHHHcCCeEEEEcCCCC--cChHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Q 046127 92 VLTTPLYYVNA-PPHMGSAYTTIAADAIARFQRLLGKKVIFITGTDE--HGEKIAAAAADGGSSPSEHCDVVSQAYKTLW 168 (345)
Q Consensus 92 ~I~~~~PypnG-~LHIGHar~~i~~DvlaR~lr~~G~~V~~v~G~D~--~G~~I~~~A~~~g~~p~~~~~~~~~~~~~~l 168 (345)
.+.++. -||| .|||||..+ .-.+.++++ .|++|.++.|--+ .|.|.-....+...+.++ +.++...+..++
T Consensus 32 ~vy~G~-dPTg~~lHlGh~v~---l~~l~~lq~-~G~~~~iligd~ta~igdpsg~~~~R~~~~~~~-i~~n~~~i~~~l 105 (377)
T TIGR00234 32 KLYVGF-DPTAPSLHLGHLVP---LLKLRDFQQ-AGHEVIVLLGDATALIGDPSGKSEERKLLTREE-VQENAENIKKQI 105 (377)
T ss_pred EEEEee-CCCCCCccHHHHHH---HHHHHHHHH-CCCcEEEEEeccchhhcCCCChHHHhhcCCHHH-HHHHHHHHHHHH
Confidence 333333 5789 899999664 344566655 7999988654211 233432222222333333 334445554443
Q ss_pred hhcCcccC
Q 046127 169 KDLDIAYD 176 (345)
Q Consensus 169 ~~lgI~~D 176 (345)
..|+++|
T Consensus 106 -a~gld~~ 112 (377)
T TIGR00234 106 -ARFLDFE 112 (377)
T ss_pred -HHhCChh
Confidence 4555543
No 124
>COG1656 Uncharacterized conserved protein [Function unknown]
Probab=88.23 E-value=0.92 Score=39.67 Aligned_cols=89 Identities=24% Similarity=0.409 Sum_probs=48.6
Q ss_pred HHHHHHHHcCCeEEEEcCCCCcChHHHHHHHhCCC---CHHHHHHHHHHHHHHHHhhcCcccCccccCCChhhHHHHHHH
Q 046127 117 AIARFQRLLGKKVIFITGTDEHGEKIAAAAADGGS---SPSEHCDVVSQAYKTLWKDLDIAYDKFIRTTEPKHEAIVKEF 193 (345)
Q Consensus 117 vlaR~lr~~G~~V~~v~G~D~~G~~I~~~A~~~g~---~p~~~~~~~~~~~~~~l~~lgI~~D~f~~T~~~~~~~~v~~~ 193 (345)
-+||++|+.||++.+.. +.-+..|...+.+.|. +.. ...++.. ++|+.- .|..+. ...+.+.++
T Consensus 17 ~LARwLRllGydt~~~~--~~~d~~i~~i~~~e~rIllTRD------r~L~~r~--k~g~~~-i~i~~~--s~~~Ql~e~ 83 (165)
T COG1656 17 KLARWLRLLGYDTVYSS--NESDDEIILIAKKEGRILLTRD------RELYKRA--KLGIKA-ILIRSD--SIEEQLAEF 83 (165)
T ss_pred HHHHHHHHcCCceeeec--cCCcHHHHHHHhcCCeEEEecc------HHHHHHh--hccCce-EEEeCC--CHHHHHHHH
Confidence 37999999999999987 3334456666666442 111 1111111 233321 233333 356677777
Q ss_pred HHHHHhCCCeeecccCcccccCCCCccc
Q 046127 194 YSSVLANGDIYKADYEGLYCVNCEEYKD 221 (345)
Q Consensus 194 ~~~L~~kG~iy~~~~~~~yc~~c~~~l~ 221 (345)
+.+|-.++-+... .-=|+.|+..|-
T Consensus 84 ~~~~~l~~~~~~e---~~RCp~CN~~L~ 108 (165)
T COG1656 84 LARLGLKPRLFPE---FSRCPECNGELE 108 (165)
T ss_pred HHHhccchhcccc---cccCcccCCEec
Confidence 7777655533222 334777776553
No 125
>TIGR00373 conserved hypothetical protein TIGR00373. This family of proteins is, so far, restricted to archaeal genomes. The family appears to be distantly related to the N-terminal region of the eukaryotic transcription initiation factor IIE alpha chain.
Probab=86.38 E-value=0.7 Score=40.26 Aligned_cols=40 Identities=18% Similarity=0.031 Sum_probs=30.5
Q ss_pred CeeecccCcccccCCCCccchhhhhc-CCcCCCCCCCceEe
Q 046127 202 DIYKADYEGLYCVNCEEYKDEKELLE-NQCCPIHLKPCVAR 241 (345)
Q Consensus 202 ~iy~~~~~~~yc~~c~~~l~d~el~~-~~~c~~~~~pve~r 241 (345)
+-++.+...+.||+|+.=++-.|+.+ +..|+.||.+++..
T Consensus 101 l~~e~~~~~Y~Cp~c~~r~tf~eA~~~~F~Cp~Cg~~L~~~ 141 (158)
T TIGR00373 101 LEFETNNMFFICPNMCVRFTFNEAMELNFTCPRCGAMLDYL 141 (158)
T ss_pred HhhccCCCeEECCCCCcEeeHHHHHHcCCcCCCCCCEeeec
Confidence 44566677888999998888777765 46799999987543
No 126
>PRK12283 tryptophanyl-tRNA synthetase; Reviewed
Probab=86.02 E-value=3.3 Score=41.46 Aligned_cols=80 Identities=16% Similarity=0.175 Sum_probs=47.0
Q ss_pred EEEccCCCCCCcCchhHHHHHHHHHHHHHHHH-HcCCeEEEEcCCCCcChHHHHHHHhCCCCHHHHHHHHHHHHHHHHhh
Q 046127 92 VLTTPLYYVNAPPHMGSAYTTIAADAIARFQR-LLGKKVIFITGTDEHGEKIAAAAADGGSSPSEHCDVVSQAYKTLWKD 170 (345)
Q Consensus 92 ~I~~~~PypnG~LHIGHar~~i~~DvlaR~lr-~~G~~V~~v~G~D~~G~~I~~~A~~~g~~p~~~~~~~~~~~~~~l~~ 170 (345)
+++.. -|+|.+||||..+.+. .+.. ..|+++++ +=.|.|-.-+ ...+++++ .++...+..++-+
T Consensus 5 v~sGi--qPSG~~HLGnylG~ik-----~wv~lq~~~~~~~-~IADlHAlt~------~~~d~~~i-r~~~~~~~a~~lA 69 (398)
T PRK12283 5 VLSGM--RPTGRLHLGHYHGVLK-----NWVKLQHEYECFF-FVADWHALTT------HYETPEVI-EKNVWDMVIDWLA 69 (398)
T ss_pred EEEEe--CCCCcchHHHHHHHHH-----HHHHHhcCCcEEE-EeecHHHHhC------CCCCHHHH-HHHHHHHHHHHHH
Confidence 44444 4669999999877543 3222 34777653 3455552111 12356544 4455668899999
Q ss_pred cCcccC---ccccCCChhh
Q 046127 171 LDIAYD---KFIRTTEPKH 186 (345)
Q Consensus 171 lgI~~D---~f~~T~~~~~ 186 (345)
+|++++ .|..+..+.|
T Consensus 70 ~GlDP~k~~if~QS~v~eh 88 (398)
T PRK12283 70 AGVDPAQATLFIQSKVPEH 88 (398)
T ss_pred cCCCccceEEEECCCchHH
Confidence 999987 3444444555
No 127
>PTZ00348 tyrosyl-tRNA synthetase; Provisional
Probab=85.86 E-value=4.7 Score=43.14 Aligned_cols=83 Identities=13% Similarity=0.109 Sum_probs=44.4
Q ss_pred CEEEEccCCCCCCcCchhHHHHHHHHHHHHHHHHHcCCeEEEEcCCCCcChHHHHHHHhCCCCHHHHHHHHHHHHHHHHh
Q 046127 90 PFVLTTPLYYVNAPPHMGSAYTTIAADAIARFQRLLGKKVIFITGTDEHGEKIAAAAADGGSSPSEHCDVVSQAYKTLWK 169 (345)
Q Consensus 90 ~~~I~~~~PypnG~LHIGHar~~i~~DvlaR~lr~~G~~V~~v~G~D~~G~~I~~~A~~~g~~p~~~~~~~~~~~~~~l~ 169 (345)
++.+.++. -|||.+||||. +++=+-.+-+...|++|++..+ |-|..- ..+.+.+.+.+.. ....+.+++.
T Consensus 32 ~~rv~sGi-~PTG~lHLGng---~~~aik~~~~~q~g~~~~~lIA-D~HAlt----~~~~~~~l~~i~~-~~~~~~~~~l 101 (682)
T PTZ00348 32 LIRCYDGF-EPSGRMHIAQG---IFKAVNVNKCTQAGCEFVFWVA-DWFALM----NDKVGGELEKIRI-VGRYLIEVWK 101 (682)
T ss_pred CCEEEEee-CCCCcCeeccH---HHHHHHHHHHHhCCCeEEEEEc-chhhhc----CCCCCCCHHHHHH-HHHHHHHHHH
Confidence 34444444 57899999993 2221112222357888876432 222211 1233344444332 2346777899
Q ss_pred hcCcccC--ccccCC
Q 046127 170 DLDIAYD--KFIRTT 182 (345)
Q Consensus 170 ~lgI~~D--~f~~T~ 182 (345)
++|++.+ .|+..+
T Consensus 102 A~GlDpeK~~~~~qS 116 (682)
T PTZ00348 102 AAGMDMDKVLFLWSS 116 (682)
T ss_pred HcCCCccceEEEECc
Confidence 9999988 344444
No 128
>COG0162 TyrS Tyrosyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=85.47 E-value=2.6 Score=42.22 Aligned_cols=102 Identities=15% Similarity=0.120 Sum_probs=54.9
Q ss_pred CCCC-cCchhHHHHHHHHHHHHHHHHHcCCeEEEEcCC--CCcChHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhcCc--
Q 046127 99 YVNA-PPHMGSAYTTIAADAIARFQRLLGKKVIFITGT--DEHGEKIAAAAADGGSSPSEHCDVVSQAYKTLWKDLDI-- 173 (345)
Q Consensus 99 ypnG-~LHIGHar~~i~~DvlaR~lr~~G~~V~~v~G~--D~~G~~I~~~A~~~g~~p~~~~~~~~~~~~~~l~~lgI-- 173 (345)
=||| .|||||.-+ .-.++|+ ...||+|..+.|- --.|+|.-...+. ..-..+.+..+.+.+++++..+==
T Consensus 40 DPTa~slHlGhlv~---l~kL~~f-Q~aGh~~ivLigd~ta~IgDpsGk~e~r-~~l~~e~v~~n~~~i~~ql~~~ld~k 114 (401)
T COG0162 40 DPTAPSLHLGHLVP---LMKLRRF-QDAGHKPIVLIGDATAMIGDPSGKSEER-KLLTRETVLENAETIKKQLGKFLDNK 114 (401)
T ss_pred CCCCCccchhhHHH---HHHHHHH-HHCCCeEEEEecccceecCCCCCCHHHH-hhccHHHHHHHHHHHHHHhcccCCcc
Confidence 4779 799999753 4455665 5789999987663 2345554222222 222233455566666665553211
Q ss_pred -c-cCccccCCChhhHHHHHHH-----HHHHHhCCCeee
Q 046127 174 -A-YDKFIRTTEPKHEAIVKEF-----YSSVLANGDIYK 205 (345)
Q Consensus 174 -~-~D~f~~T~~~~~~~~v~~~-----~~~L~~kG~iy~ 205 (345)
. .++.-+..+..|...+..+ +.+++++.-+-.
T Consensus 115 ~~~v~ns~w~~~~~y~~~l~~~g~~~sv~rml~~d~~~~ 153 (401)
T COG0162 115 AEFVNNSDWLKKLNYLDFLRDVGKHFSVNRMLRRDDVKK 153 (401)
T ss_pred eEEEechHHhCcCCHHHHHHHHHhHccHHHHHHhhhHHH
Confidence 1 1111122344566666666 566666655543
No 129
>PRK12282 tryptophanyl-tRNA synthetase II; Reviewed
Probab=84.01 E-value=5.7 Score=38.85 Aligned_cols=72 Identities=10% Similarity=0.026 Sum_probs=42.6
Q ss_pred EEEEccCCCCCCcCchhHHHHHHHHHHHHHHHHHcCCeEEEEcCCCCcChHHHHHHHhCCCCHHHHHHHHHHHHHHHHhh
Q 046127 91 FVLTTPLYYVNAPPHMGSAYTTIAADAIARFQRLLGKKVIFITGTDEHGEKIAAAAADGGSSPSEHCDVVSQAYKTLWKD 170 (345)
Q Consensus 91 ~~I~~~~PypnG~LHIGHar~~i~~DvlaR~lr~~G~~V~~v~G~D~~G~~I~~~A~~~g~~p~~~~~~~~~~~~~~l~~ 170 (345)
.+++.-- |+|.+||||..+++..- +.+...|. |+ ++=.|.|..- . ...+++++. ++..+...++.+
T Consensus 4 ~v~sG~~--PTG~~HLGn~l~~~~~~---~~lQ~~~~-~~-i~IaD~ha~~--~----~~~~~~~i~-~~~~~~~~~~lA 69 (333)
T PRK12282 4 IILTGDR--PTGKLHLGHYVGSLKNR---VALQNEHE-QF-VLIADQQALT--D----NAKNPEKIR-RNILEVALDYLA 69 (333)
T ss_pred EEEEeeC--CCCcchHHHHHHHHHHH---HHHHhCCC-EE-EEEccchhHh--C----CCCCHHHHH-HHHHHHHHHHHH
Confidence 4444443 56999999977654332 23344565 43 4446666311 1 234666544 445567778889
Q ss_pred cCcccC
Q 046127 171 LDIAYD 176 (345)
Q Consensus 171 lgI~~D 176 (345)
+|++.+
T Consensus 70 ~G~dp~ 75 (333)
T PRK12282 70 VGIDPA 75 (333)
T ss_pred hCcChh
Confidence 999987
No 130
>PF13240 zinc_ribbon_2: zinc-ribbon domain
Probab=83.44 E-value=0.62 Score=27.21 Aligned_cols=23 Identities=30% Similarity=0.729 Sum_probs=17.4
Q ss_pred cccCCCCccchhhhhcCCcCCCCCCCc
Q 046127 212 YCVNCEEYKDEKELLENQCCPIHLKPC 238 (345)
Q Consensus 212 yc~~c~~~l~d~el~~~~~c~~~~~pv 238 (345)
||++|+.-+++. ...|+.||+++
T Consensus 1 ~Cp~CG~~~~~~----~~fC~~CG~~l 23 (23)
T PF13240_consen 1 YCPNCGAEIEDD----AKFCPNCGTPL 23 (23)
T ss_pred CCcccCCCCCCc----CcchhhhCCcC
Confidence 799999877654 25699999874
No 131
>smart00531 TFIIE Transcription initiation factor IIE.
Probab=81.54 E-value=1.3 Score=37.95 Aligned_cols=43 Identities=14% Similarity=0.063 Sum_probs=31.3
Q ss_pred hCCCeeecccCcccccCCCCccchhhhhcC------CcCCCCCCCceEe
Q 046127 199 ANGDIYKADYEGLYCVNCEEYKDEKELLEN------QCCPIHLKPCVAR 241 (345)
Q Consensus 199 ~kG~iy~~~~~~~yc~~c~~~l~d~el~~~------~~c~~~~~pve~r 241 (345)
+.-+-++.+...+.||.|+.-++..+.... ..|+.||.+++.-
T Consensus 88 ~~~l~~e~~~~~Y~Cp~C~~~y~~~ea~~~~d~~~~f~Cp~Cg~~l~~~ 136 (147)
T smart00531 88 EDKLEDETNNAYYKCPNCQSKYTFLEANQLLDMDGTFTCPRCGEELEED 136 (147)
T ss_pred HHHHhcccCCcEEECcCCCCEeeHHHHHHhcCCCCcEECCCCCCEEEEc
Confidence 334557777888999999987776655432 5799999987653
No 132
>PF13248 zf-ribbon_3: zinc-ribbon domain
Probab=76.76 E-value=1.4 Score=26.37 Aligned_cols=24 Identities=25% Similarity=0.563 Sum_probs=17.9
Q ss_pred ccccCCCCccchhhhhcCCcCCCCCCCc
Q 046127 211 LYCVNCEEYKDEKELLENQCCPIHLKPC 238 (345)
Q Consensus 211 ~yc~~c~~~l~d~el~~~~~c~~~~~pv 238 (345)
.+|++|+..+++. ...|+.||+++
T Consensus 3 ~~Cp~Cg~~~~~~----~~fC~~CG~~L 26 (26)
T PF13248_consen 3 MFCPNCGAEIDPD----AKFCPNCGAKL 26 (26)
T ss_pred CCCcccCCcCCcc----cccChhhCCCC
Confidence 5799999865543 35799999864
No 133
>PF03485 Arg_tRNA_synt_N: Arginyl tRNA synthetase N terminal domain; InterPro: IPR005148 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This domain is found at the N terminus of Arginyl tRNA synthetase, also called additional domain 1 (Add-1). It is about 140 residues long and it has been suggested that this domain will be involved in tRNA recognition [].; GO: 0000166 nucleotide binding, 0004814 arginine-tRNA ligase activity, 0005524 ATP binding, 0006420 arginyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1F7V_A 1F7U_A 1BS2_A 2ZUE_A 2ZUF_A 1IQ0_A 3GDZ_B.
Probab=74.28 E-value=1.3 Score=34.15 Aligned_cols=37 Identities=16% Similarity=0.213 Sum_probs=30.5
Q ss_pred chHHHHHH----HHHHHhhchhcchhhccccccccccccc-ccccccc
Q 046127 20 SLQKEFEE----MAARINYSIQNSLWLLNPLHSKATTHFR-NRLKFRQ 62 (345)
Q Consensus 20 ~~~k~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 62 (345)
.++|.+++ ||+.|+..+.....+ +.++..+ |+|||.+
T Consensus 44 ~lak~~k~~P~~iA~~i~~~l~~~~~i------~~vev~gpGFiN~~L 85 (85)
T PF03485_consen 44 RLAKKLKKNPREIAEEIAEKLEKSPII------EKVEVAGPGFINFFL 85 (85)
T ss_dssp HHHHHTTS-HHHHHHHHHHCHCTTTTE------EEEEEETTTEEEEEE
T ss_pred HHHHHcCCCHHHHHHHHHHhcCCCCCE------EEEEEcCCcEEEEeC
Confidence 56677765 999999999999887 7788888 6999864
No 134
>KOG2713 consensus Mitochondrial tryptophanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=73.86 E-value=16 Score=34.92 Aligned_cols=103 Identities=17% Similarity=0.179 Sum_probs=62.9
Q ss_pred CCEEEEccCCCCCCcCchhHHHHHHHHHHHHHHHHHcCCeEEEEcCCCCcChHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Q 046127 89 DPFVLTTPLYYVNAPPHMGSAYTTIAADAIARFQRLLGKKVIFITGTDEHGEKIAAAAADGGSSPSEHCDVVSQAYKTLW 168 (345)
Q Consensus 89 ~~~~I~~~~PypnG~LHIGHar~~i~~DvlaR~lr~~G~~V~~v~G~D~~G~~I~~~A~~~g~~p~~~~~~~~~~~~~~l 168 (345)
.+-++...- |+|.+|||+..+++-..+----....|-.|+|. =.|.| |.....+|. .-.+..-.+...|
T Consensus 13 ~~rvfSGIQ--PTG~~HLGNYLGai~~Wv~LQ~~~d~~~~~~f~-vvDlH-------aITvp~dp~-~lrq~~~dm~A~l 81 (347)
T KOG2713|consen 13 PKRVFSGIQ--PTGIPHLGNYLGAIKPWVQLQNEYDKNILVLFS-VVDLH-------AITVPQDPA-ELRQATHDMAASL 81 (347)
T ss_pred cceeEeccC--CCCCchhhhhhhhhhHHHHHHHHhcCCceEEEE-Eeece-------eecCCCChH-HHHHHHHHHHHHH
Confidence 445555554 569999999988877665444444555555543 24555 234556666 3445556677888
Q ss_pred hhcCcccC---ccccCCChhhHHHHHHHHHHHHhCCCe
Q 046127 169 KDLDIAYD---KFIRTTEPKHEAIVKEFYSSVLANGDI 203 (345)
Q Consensus 169 ~~lgI~~D---~f~~T~~~~~~~~v~~~~~~L~~kG~i 203 (345)
-+-||++. .|+...-+.|.+. .|++..|-..|.+
T Consensus 82 LAcGIdp~Ks~lF~QS~Vpqh~el-~WlLsslt~mg~L 118 (347)
T KOG2713|consen 82 LACGIDPEKSSLFVQSDVPQHAEL-SWLLSSLTTMGRL 118 (347)
T ss_pred HHhccCcccceeeeeccchHHHHH-HHHHHhccchHHH
Confidence 88999986 5655444555544 4566555444443
No 135
>PF09862 DUF2089: Protein of unknown function (DUF2089); InterPro: IPR018658 This family consists of various hypothetical prokaryotic proteins.
Probab=71.50 E-value=6.4 Score=32.40 Aligned_cols=48 Identities=17% Similarity=0.169 Sum_probs=35.6
Q ss_pred ccCCCCccchhhhhcCCcCCCCCCCceEeeccccccchhH-hHHHHHHHHhcC
Q 046127 213 CVNCEEYKDEKELLENQCCPIHLKPCVARKEDNYFFALSK-YQKLLEDTLTEN 264 (345)
Q Consensus 213 c~~c~~~l~d~el~~~~~c~~~~~pve~r~~~~~f~~l~~-~~~~L~e~l~~~ 264 (345)
||.|+.-+.=.. -.|+.|++.++=.=+..||..|++ -...+..|+...
T Consensus 1 CPvCg~~l~vt~----l~C~~C~t~i~G~F~l~~~~~L~~E~~~Fi~~Fi~~r 49 (113)
T PF09862_consen 1 CPVCGGELVVTR----LKCPSCGTEIEGEFELPWFARLSPEQLEFIKLFIKNR 49 (113)
T ss_pred CCCCCCceEEEE----EEcCCCCCEEEeeeccchhhcCCHHHHHHHHHHHHhc
Confidence 899996544332 359999999888888899999975 556666666654
No 136
>PRK03824 hypA hydrogenase nickel incorporation protein; Provisional
Probab=67.34 E-value=18 Score=30.59 Aligned_cols=61 Identities=21% Similarity=0.217 Sum_probs=36.8
Q ss_pred ChhhHHHHHHHHHHHHhCCCeeec-------ccCcccccCCCCccchhhh-------------------hcCCcCCCCCC
Q 046127 183 EPKHEAIVKEFYSSVLANGDIYKA-------DYEGLYCVNCEEYKDEKEL-------------------LENQCCPIHLK 236 (345)
Q Consensus 183 ~~~~~~~v~~~~~~L~~kG~iy~~-------~~~~~yc~~c~~~l~d~el-------------------~~~~~c~~~~~ 236 (345)
+..+.+..+..|..+ .+|-+.++ ....++|..|+...+-.+. .....||.||+
T Consensus 37 s~V~pe~L~fafe~l-~~gt~~ega~L~i~~~p~~~~C~~CG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~CP~Cgs 115 (135)
T PRK03824 37 QDVDKEIVEFALNEL-LKGTILEGAEIIFEEEEAVLKCRNCGNEWSLKEVKESLDEEIREAIHFIPEVVHAFLKCPKCGS 115 (135)
T ss_pred hhhhHHHHHHHHHHH-HcCCcccCCEEEEEecceEEECCCCCCEEecccccccccccccccccccccccccCcCCcCCCC
Confidence 345566667777665 45665544 3478999999966554320 11245999997
Q ss_pred C-ceEeecc
Q 046127 237 P-CVARKED 244 (345)
Q Consensus 237 p-ve~r~~~ 244 (345)
. +.+..-+
T Consensus 116 ~~~~i~~G~ 124 (135)
T PRK03824 116 RDFEIVKGR 124 (135)
T ss_pred CCcEEecCc
Confidence 5 4444433
No 137
>KOG0437 consensus Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=67.07 E-value=8 Score=41.57 Aligned_cols=68 Identities=16% Similarity=0.353 Sum_probs=52.0
Q ss_pred CCCCCCCceEeeccccccch--hHhHHHHHHHHhcCCCcccChHHHHHHH---HHHhcCCCCcccccCCCCCCcccCCCC
Q 046127 231 CPIHLKPCVARKEDNYFFAL--SKYQKLLEDTLTENPDFVQPSFRLNEVQ---GWIKSGLRDFSISRASVDWGIPVPNDN 305 (345)
Q Consensus 231 c~~~~~pve~r~~~~~f~~l--~~~~~~L~e~l~~~~~~~~P~~~~~~~~---~wl~~gL~D~~ISR~~~~WGIpvP~~~ 305 (345)
-.++|..++.--.+|||++- +..+++..+-++... ..-|+. ++-++ .||. .|..||. ..-|..+|.|+
T Consensus 512 mSRSGdeCiVAL~DQWYldYgE~eWKk~a~~cLe~l~-~f~dEt-R~~fE~tLdWL~----~wacsRs-yGLGTrlPWD~ 584 (1080)
T KOG0437|consen 512 MSRSGDECIVALCDQWYLDYGEAEWKKQAKECLENLN-TFSDET-RNGFEDTLDWLG----QWACSRS-YGLGTRLPWDE 584 (1080)
T ss_pred hccCCCceEEEeccchhhhcCcHHHHHHHHHHHhhhh-ccCHHH-HHHHHHHHHHHH----hhhhhcc-ccCCCCCCCcH
Confidence 45788889999999999998 468888888888763 235554 55554 6764 5999996 78899999773
No 138
>PRK00398 rpoP DNA-directed RNA polymerase subunit P; Provisional
Probab=66.64 E-value=3.4 Score=28.03 Aligned_cols=35 Identities=14% Similarity=0.227 Sum_probs=24.0
Q ss_pred cccccCCCCccchhhhhcCCcCCCCCCCceEeecc
Q 046127 210 GLYCVNCEEYKDEKELLENQCCPIHLKPCVARKED 244 (345)
Q Consensus 210 ~~yc~~c~~~l~d~el~~~~~c~~~~~pve~r~~~ 244 (345)
.+-|++|+..+.-.+......|+.||.++.+...+
T Consensus 3 ~y~C~~CG~~~~~~~~~~~~~Cp~CG~~~~~~~~~ 37 (46)
T PRK00398 3 EYKCARCGREVELDEYGTGVRCPYCGYRILFKERP 37 (46)
T ss_pred EEECCCCCCEEEECCCCCceECCCCCCeEEEccCC
Confidence 45699999876544333346799999987765443
No 139
>COG1592 Rubrerythrin [Energy production and conversion]
Probab=66.62 E-value=6.9 Score=34.43 Aligned_cols=44 Identities=20% Similarity=0.446 Sum_probs=28.9
Q ss_pred ChhhHHHHHHHHHHHHhCCCeeecccCcccccCCCCccchhhhhcCCcCCCCCCC
Q 046127 183 EPKHEAIVKEFYSSVLANGDIYKADYEGLYCVNCEEYKDEKELLENQCCPIHLKP 237 (345)
Q Consensus 183 ~~~~~~~v~~~~~~L~~kG~iy~~~~~~~yc~~c~~~l~d~el~~~~~c~~~~~p 237 (345)
+..|.......+.++. +|. +|-|+-||-..-+ ..+..||.||.|
T Consensus 115 Ek~H~~~~~~~Le~~~-~~~-------~~vC~vCGy~~~g---e~P~~CPiCga~ 158 (166)
T COG1592 115 EKRHAEMFRGLLERLE-EGK-------VWVCPVCGYTHEG---EAPEVCPICGAP 158 (166)
T ss_pred HHHHHHHHHHHHHhhh-cCC-------EEEcCCCCCcccC---CCCCcCCCCCCh
Confidence 3455555555555443 222 8999999976655 335789999987
No 140
>COG1675 TFA1 Transcription initiation factor IIE, alpha subunit [Transcription]
Probab=66.30 E-value=8 Score=34.37 Aligned_cols=56 Identities=13% Similarity=0.137 Sum_probs=37.7
Q ss_pred HHHHHHHHHHhCCCeeecccCcccccCCCCccchhhhhc-CCcCCCCCCCceEeeccc
Q 046127 189 IVKEFYSSVLANGDIYKADYEGLYCVNCEEYKDEKELLE-NQCCPIHLKPCVARKEDN 245 (345)
Q Consensus 189 ~v~~~~~~L~~kG~iy~~~~~~~yc~~c~~~l~d~el~~-~~~c~~~~~pve~r~~~~ 245 (345)
.+..++++|..+ +=+......+.|+.|..-++-.+..+ ...|+.||..++......
T Consensus 93 ~~~~~le~Lk~~-le~~~~~~~y~C~~~~~r~sfdeA~~~~F~Cp~Cg~~L~~~d~s~ 149 (176)
T COG1675 93 KKRKILEKLKRK-LEKETENNYYVCPNCHVKYSFDEAMELGFTCPKCGEDLEEYDSSE 149 (176)
T ss_pred HHHHHHHHHHHH-HHhhccCCceeCCCCCCcccHHHHHHhCCCCCCCCchhhhccchH
Confidence 445555555432 33456677888999998887655443 477999999987655544
No 141
>COG5270 PUA domain (predicted RNA-binding domain) [Translation, ribosomal structure and biogenesis]
Probab=66.17 E-value=4.2 Score=36.25 Aligned_cols=37 Identities=8% Similarity=0.140 Sum_probs=27.2
Q ss_pred hCCCeeecccCcccccCCCCccchhhhhcCCcCCCCCCCceEe
Q 046127 199 ANGDIYKADYEGLYCVNCEEYKDEKELLENQCCPIHLKPCVAR 241 (345)
Q Consensus 199 ~kG~iy~~~~~~~yc~~c~~~l~d~el~~~~~c~~~~~pve~r 241 (345)
+++-.+..+.+.|||.+|+-.+.. ..|..||...+..
T Consensus 3 kk~~~~~gk~~iyWCe~cNlPl~~------~~c~~cg~~~~~l 39 (202)
T COG5270 3 KKMPVVLGKFPIYWCEKCNLPLLG------RRCSVCGSKVEEL 39 (202)
T ss_pred cccceeecccceeehhhCCCcccc------ccccccCCcceEE
Confidence 456677788899999999976542 5688888655443
No 142
>PF10009 DUF2252: Uncharacterized protein conserved in bacteria (DUF2252); InterPro: IPR018721 This domain has no known function.
Probab=64.22 E-value=37 Score=33.86 Aligned_cols=97 Identities=12% Similarity=0.118 Sum_probs=66.9
Q ss_pred CCCCCCCEEEEccCCCCCCcCchhHHHHHHHHHHHHHHHHHcCCeEEEEcCCCCcC---------------hHHHHHHHh
Q 046127 84 GTEPADPFVLTTPLYYVNAPPHMGSAYTTIAADAIARFQRLLGKKVIFITGTDEHG---------------EKIAAAAAD 148 (345)
Q Consensus 84 ~~~~~~~~~I~~~~PypnG~LHIGHar~~i~~DvlaR~lr~~G~~V~~v~G~D~~G---------------~~I~~~A~~ 148 (345)
.+..+..+.|+ |++|++|...+ .+.+=..+++++|++ ..|...++.
T Consensus 37 ~~~~~~~v~ic-------GD~Hl~NFG~~------------~~~~~~~vFdiNDFDEa~~gp~~wDl~Rla~Si~laa~~ 97 (385)
T PF10009_consen 37 TPPSGPPVWIC-------GDAHLENFGAF------------ASPEGRVVFDINDFDEALPGPFEWDLKRLATSIVLAARE 97 (385)
T ss_pred CCCCCCceEEe-------ccchhhccCcc------------cCCCCCEEecCCCCCcCCcCChHHHHHHHHHHHHHHHHH
Confidence 44556677776 99999998754 244444555666655 347888899
Q ss_pred CCCCH---HHHHHHHHHHHHHHHhhcCccc--CccccCCChhhHHHHHHHHHHHHhC
Q 046127 149 GGSSP---SEHCDVVSQAYKTLWKDLDIAY--DKFIRTTEPKHEAIVKEFYSSVLAN 200 (345)
Q Consensus 149 ~g~~p---~~~~~~~~~~~~~~l~~lgI~~--D~f~~T~~~~~~~~v~~~~~~L~~k 200 (345)
.|.+. .+++..+.+.+++.|..+.-.. +.++ .+.......+..++++..++
T Consensus 98 ~gl~~~~~~~~~~~~~~~Y~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ka~~r 153 (385)
T PF10009_consen 98 NGLSDKDARKAVRAFLEGYREALADYAGMDPLDVWY-FTPDNASGPVRKALKKARKR 153 (385)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHhcCCChhhcee-cCchhhHHHHHHHHHHHHHh
Confidence 99865 4677888899998888877654 3454 33345677778888777665
No 143
>PRK12496 hypothetical protein; Provisional
Probab=61.50 E-value=3.8 Score=35.88 Aligned_cols=31 Identities=19% Similarity=0.358 Sum_probs=21.9
Q ss_pred cccccCCCCccchhhhhcCCcCCCCCCCceEee
Q 046127 210 GLYCVNCEEYKDEKELLENQCCPIHLKPCVARK 242 (345)
Q Consensus 210 ~~yc~~c~~~l~d~el~~~~~c~~~~~pve~r~ 242 (345)
.+.|++|++..+...- ...|+.||.|+..+.
T Consensus 127 ~~~C~gC~~~~~~~~~--~~~C~~CG~~~~r~~ 157 (164)
T PRK12496 127 RKVCKGCKKKYPEDYP--DDVCEICGSPVKRKM 157 (164)
T ss_pred eEECCCCCccccCCCC--CCcCCCCCChhhhcc
Confidence 4679999988764322 246999999975443
No 144
>KOG2145 consensus Cytoplasmic tryptophanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=60.26 E-value=6.9 Score=37.52 Aligned_cols=46 Identities=20% Similarity=0.199 Sum_probs=31.2
Q ss_pred CCCCCEEEEccCCCCCCcCchhHHHHHHHHHHHHHHHHHcCCeEEEEcCCC
Q 046127 86 EPADPFVLTTPLYYVNAPPHMGSAYTTIAADAIARFQRLLGKKVIFITGTD 136 (345)
Q Consensus 86 ~~~~~~~I~~~~PypnG~LHIGHar~~i~~DvlaR~lr~~G~~V~~v~G~D 136 (345)
..+++|++.++----++.+||||.-+++. +.|+.-. ++|-.|....
T Consensus 81 eq~kpFyLYTGRGpSS~smHlGHliPFif----tKwlQe~-F~vpLVIqlT 126 (397)
T KOG2145|consen 81 EQGKPFYLYTGRGPSSESMHLGHLIPFIF----TKWLQDV-FDVPLVIQLT 126 (397)
T ss_pred HcCCceEEEeCCCCCccccccccchhHHH----HHHHHHH-hCCceEEEec
Confidence 45688888887655778999999988864 4554332 4565555443
No 145
>COG2995 PqiA Uncharacterized paraquat-inducible protein A [Function unknown]
Probab=57.74 E-value=8.4 Score=38.32 Aligned_cols=51 Identities=12% Similarity=0.142 Sum_probs=35.4
Q ss_pred HHHHHHHHhCCCeeecccCcccccCCCCccchhhhhcCCcCCCCCCCceEeecc
Q 046127 191 KEFYSSVLANGDIYKADYEGLYCVNCEEYKDEKELLENQCCPIHLKPCVARKED 244 (345)
Q Consensus 191 ~~~~~~L~~kG~iy~~~~~~~yc~~c~~~l~d~el~~~~~c~~~~~pve~r~~~ 244 (345)
.++++++.-.+.........-.|..|......+ +.++|++|+.++-.|...
T Consensus 201 ~~lwe~~~pq~~~~~~~~~~~~C~~C~~~~~~~---~~~~CpRC~~~Ly~rr~~ 251 (418)
T COG2995 201 RWLWERFYPQTLATGAREGLRSCLCCHYILPHD---AEPRCPRCGSKLYVRRRN 251 (418)
T ss_pred HHHHHhhccccCCCCCcccceecccccccCCHh---hCCCCCCCCChhhccChh
Confidence 456666665544444556677899999877765 348899999997666544
No 146
>COG1998 RPS31 Ribosomal protein S27AE [Translation, ribosomal structure and biogenesis]
Probab=57.30 E-value=4.4 Score=28.28 Aligned_cols=26 Identities=12% Similarity=0.280 Sum_probs=19.1
Q ss_pred cccccCCC--CccchhhhhcCCcCCCCCCC
Q 046127 210 GLYCVNCE--EYKDEKELLENQCCPIHLKP 237 (345)
Q Consensus 210 ~~yc~~c~--~~l~d~el~~~~~c~~~~~p 237 (345)
--+||+|+ .|++++.-. -.|.+||-.
T Consensus 19 ~~~CPrCG~gvfmA~H~dR--~~CGkCgyT 46 (51)
T COG1998 19 NRFCPRCGPGVFMADHKDR--WACGKCGYT 46 (51)
T ss_pred cccCCCCCCcchhhhcCce--eEeccccce
Confidence 34799999 888876432 468999854
No 147
>PF07754 DUF1610: Domain of unknown function (DUF1610); InterPro: IPR011668 This domain is found in archaeal species. It is likely to bind zinc via its four well-conserved cysteine residues.
Probab=53.45 E-value=7.8 Score=22.93 Aligned_cols=23 Identities=22% Similarity=0.336 Sum_probs=14.4
Q ss_pred ccCCCCccchhhhhcCCcCCCCC
Q 046127 213 CVNCEEYKDEKELLENQCCPIHL 235 (345)
Q Consensus 213 c~~c~~~l~d~el~~~~~c~~~~ 235 (345)
|.+|+..+.+.+..-...|+.||
T Consensus 1 C~sC~~~i~~r~~~v~f~CPnCG 23 (24)
T PF07754_consen 1 CTSCGRPIAPREQAVPFPCPNCG 23 (24)
T ss_pred CccCCCcccCcccCceEeCCCCC
Confidence 56777777766643335577776
No 148
>COG0777 AccD Acetyl-CoA carboxylase beta subunit [Lipid metabolism]
Probab=52.36 E-value=15 Score=35.00 Aligned_cols=24 Identities=38% Similarity=0.634 Sum_probs=20.8
Q ss_pred ccCCCCccchhhhhcC-CcCCCCCC
Q 046127 213 CVNCEEYKDEKELLEN-QCCPIHLK 236 (345)
Q Consensus 213 c~~c~~~l~d~el~~~-~~c~~~~~ 236 (345)
|++|+..+...|+..+ .+|+.|+.
T Consensus 31 Cp~c~~~~y~~eL~~n~~vcp~c~~ 55 (294)
T COG0777 31 CPSCGEMLYRKELESNLKVCPKCGH 55 (294)
T ss_pred CCCccceeeHHHHHhhhhcccccCc
Confidence 9999999999999863 67999973
No 149
>PRK14529 adenylate kinase; Provisional
Probab=52.28 E-value=26 Score=32.21 Aligned_cols=121 Identities=13% Similarity=0.070 Sum_probs=68.1
Q ss_pred CCCcChHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhcCcccCccccCCChhhHHHHHHHHHHHHhCCC-----eee----
Q 046127 135 TDEHGEKIAAAAADGGSSPSEHCDVVSQAYKTLWKDLDIAYDKFIRTTEPKHEAIVKEFYSSVLANGD-----IYK---- 205 (345)
Q Consensus 135 ~D~~G~~I~~~A~~~g~~p~~~~~~~~~~~~~~l~~lgI~~D~f~~T~~~~~~~~v~~~~~~L~~kG~-----iy~---- 205 (345)
-...|..+.....+-..-|.+++.............-|+-.|-|+||.+ .++.+...|.+.|. |+.
T Consensus 42 ~t~lg~~i~~~i~~G~lvpdei~~~lv~~~l~~~~~~g~iLDGfPRt~~-----Qa~~l~~~l~~~~~~~~~vi~l~~~~ 116 (223)
T PRK14529 42 GTELGKKAKEYIDRGDLVPDDITIPMILETLKQDGKNGWLLDGFPRNKV-----QAEKLWEALQKEGMKLDYVIEILLPR 116 (223)
T ss_pred CChHHHHHHHHHhccCcchHHHHHHHHHHHHhccCCCcEEEeCCCCCHH-----HHHHHHHHHHhcCCCCCEEEEEECCH
Confidence 3456666666665555667777655544444333355677899988763 33333444444442 111
Q ss_pred -----cccCcccccCCCCccchhhhh----cCCcCCCCCCCceEeeccccccchhHhHHHHHHHHhc
Q 046127 206 -----ADYEGLYCVNCEEYKDEKELL----ENQCCPIHLKPCVARKEDNYFFALSKYQKLLEDTLTE 263 (345)
Q Consensus 206 -----~~~~~~yc~~c~~~l~d~el~----~~~~c~~~~~pve~r~~~~~f~~l~~~~~~L~e~l~~ 263 (345)
+-..-..|+.|+......... +.+.|..|+.+++.|.-++- -+-.+.+|..|.+.
T Consensus 117 ~~l~~Rl~~R~~c~~~~~~~~~~~~~~p~~~~~~cd~~~~~l~~R~DD~~---ee~i~~Rl~~y~~~ 180 (223)
T PRK14529 117 EVAKNRIMGRRLCKNDNNHPNNIFIDAIKPDGDVCRVCGGELSTRADDQD---EEAINKRHDIYYDT 180 (223)
T ss_pred HHHHHHhhCCccccccCCcccccccCCCcccCCcCcCcCCccccCCCCCc---HHHHHHHHHHHHHc
Confidence 111234588877644333221 12478899998888876631 14566777777764
No 150
>PF03033 Glyco_transf_28: Glycosyltransferase family 28 N-terminal domain; InterPro: IPR004276 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC).; GO: 0016758 transferase activity, transferring hexosyl groups, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2IYF_B 2YJN_A 2P6P_A 1PNV_A 3H4T_A 3H4I_A 1PN3_B 3IA7_B 1NLM_B 1F0K_B ....
Probab=51.39 E-value=21 Score=29.08 Aligned_cols=27 Identities=33% Similarity=0.416 Sum_probs=21.6
Q ss_pred hhHHHHHHHHHHHHHHHHHcCCeEEEEcCC
Q 046127 106 MGSAYTTIAADAIARFQRLLGKKVIFITGT 135 (345)
Q Consensus 106 IGHar~~i~~DvlaR~lr~~G~~V~~v~G~ 135 (345)
-||+.+++ .+++-++.+||+|.+...-
T Consensus 9 ~Ghv~P~l---ala~~L~~rGh~V~~~~~~ 35 (139)
T PF03033_consen 9 RGHVYPFL---ALARALRRRGHEVRLATPP 35 (139)
T ss_dssp HHHHHHHH---HHHHHHHHTT-EEEEEETG
T ss_pred hhHHHHHH---HHHHHHhccCCeEEEeecc
Confidence 59999887 6899999999999976543
No 151
>COG2046 MET3 ATP sulfurylase (sulfate adenylyltransferase) [Inorganic ion transport and metabolism]
Probab=50.96 E-value=20 Score=35.55 Aligned_cols=33 Identities=18% Similarity=0.249 Sum_probs=25.3
Q ss_pred HHHHHHHHH-hCCCeeecccCcccccCCCCccch
Q 046127 190 VKEFYSSVL-ANGDIYKADYEGLYCVNCEEYKDE 222 (345)
Q Consensus 190 v~~~~~~L~-~kG~iy~~~~~~~yc~~c~~~l~d 222 (345)
.|.+|.+.. +-|..-..-...+||+.|++..+.
T Consensus 299 aq~if~~f~~eLgI~p~~f~e~~YC~~c~~~~~~ 332 (397)
T COG2046 299 AQEIFDEFSPELGITPVFFEEFFYCPKCGQMVST 332 (397)
T ss_pred HHHHHHhcccccCcEEEeccceeecccccCCccc
Confidence 467777766 667777777889999999976653
No 152
>COG1645 Uncharacterized Zn-finger containing protein [General function prediction only]
Probab=50.80 E-value=9 Score=32.32 Aligned_cols=43 Identities=21% Similarity=0.231 Sum_probs=27.3
Q ss_pred HHHHhCCCeeecccCcccccCCCCccchhhhhcCCcCCCCCCCceEeec
Q 046127 195 SSVLANGDIYKADYEGLYCVNCEEYKDEKELLENQCCPIHLKPCVARKE 243 (345)
Q Consensus 195 ~~L~~kG~iy~~~~~~~yc~~c~~~l~d~el~~~~~c~~~~~pve~r~~ 243 (345)
..|+.+|-. .-...||.|++.|-.. .+.-+|+.|+...+..++
T Consensus 17 A~lLl~GAk----ML~~hCp~Cg~PLF~K--dG~v~CPvC~~~~~~v~~ 59 (131)
T COG1645 17 AELLLQGAK----MLAKHCPKCGTPLFRK--DGEVFCPVCGYREVVVEE 59 (131)
T ss_pred HHHHHhhhH----HHHhhCcccCCcceee--CCeEECCCCCceEEEeec
Confidence 356656543 3345799999999862 233569999965444433
No 153
>smart00661 RPOL9 RNA polymerase subunit 9.
Probab=50.65 E-value=7.5 Score=26.69 Aligned_cols=25 Identities=24% Similarity=0.307 Sum_probs=18.5
Q ss_pred cccCCCCccchhhhhc--CCcCCCCCC
Q 046127 212 YCVNCEEYKDEKELLE--NQCCPIHLK 236 (345)
Q Consensus 212 yc~~c~~~l~d~el~~--~~~c~~~~~ 236 (345)
||+.|+..|...+..+ -..|+.||.
T Consensus 2 FCp~Cg~~l~~~~~~~~~~~vC~~Cg~ 28 (52)
T smart00661 2 FCPKCGNMLIPKEGKEKRRFVCRKCGY 28 (52)
T ss_pred CCCCCCCccccccCCCCCEEECCcCCC
Confidence 8999999887665532 245999984
No 154
>PRK00432 30S ribosomal protein S27ae; Validated
Probab=49.31 E-value=8.4 Score=26.91 Aligned_cols=25 Identities=16% Similarity=0.376 Sum_probs=18.4
Q ss_pred cccccCCCC-ccchhhhhcCCcCCCCCC
Q 046127 210 GLYCVNCEE-YKDEKELLENQCCPIHLK 236 (345)
Q Consensus 210 ~~yc~~c~~-~l~d~el~~~~~c~~~~~ 236 (345)
.-+||.|+. ++.+++ +--.|..||-
T Consensus 20 ~~fCP~Cg~~~m~~~~--~r~~C~~Cgy 45 (50)
T PRK00432 20 NKFCPRCGSGFMAEHL--DRWHCGKCGY 45 (50)
T ss_pred cCcCcCCCcchheccC--CcEECCCcCC
Confidence 349999998 877765 2256888874
No 155
>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=49.26 E-value=16 Score=36.14 Aligned_cols=90 Identities=16% Similarity=0.199 Sum_probs=49.3
Q ss_pred CcccccCCC-CccchhhhhcCCcCCCCCCCceEeeccccccch--hHhHHHHHHHHhcCCCcccChHHHHHHHHHHhcCC
Q 046127 209 EGLYCVNCE-EYKDEKELLENQCCPIHLKPCVARKEDNYFFAL--SKYQKLLEDTLTENPDFVQPSFRLNEVQGWIKSGL 285 (345)
Q Consensus 209 ~~~yc~~c~-~~l~d~el~~~~~c~~~~~pve~r~~~~~f~~l--~~~~~~L~e~l~~~~~~~~P~~~~~~~~~wl~~gL 285 (345)
-.+||..|+ ......++ +..|+.||. ....--+-|-=+| .+|.+++++-.+... +-...+...+.+.+++.+
T Consensus 239 ~~~~c~~cg~~~~~~~~~--~~~c~~Cg~-~~~~~GPlW~GpL~d~~f~e~~l~~~~~~~--l~~~~~~~klL~~i~~E~ 313 (380)
T COG1867 239 YIYHCSRCGEIVGSFREV--DEKCPHCGG-KVHLAGPLWLGPLHDEEFIEEMLEIAEGLE--LGTKKRALKLLKLIKKEL 313 (380)
T ss_pred cEEEcccccceecccccc--cccCCcccc-cceeccCcccCcccCHHHHHHHHHHhhccc--cccHHHHHHHHHHHHhhc
Confidence 345999997 22232333 356999997 3444555666444 457777777665431 122222334455665555
Q ss_pred CC----cccccCCCCCCcccCC
Q 046127 286 RD----FSISRASVDWGIPVPN 303 (345)
Q Consensus 286 ~D----~~ISR~~~~WGIpvP~ 303 (345)
.. .++++--..+|++.|.
T Consensus 314 ~~~p~fydl~~ias~l~~s~p~ 335 (380)
T COG1867 314 DISPLFYDLHRIASKLGLSAPP 335 (380)
T ss_pred CCCceEEEHHHHHHHhCCCCCC
Confidence 43 3444432347888873
No 156
>PF14369 zf-RING_3: zinc-finger
Probab=48.76 E-value=10 Score=24.39 Aligned_cols=28 Identities=14% Similarity=0.413 Sum_probs=19.1
Q ss_pred cccccCCCCccchhhhhcC-CcCCCCCCC
Q 046127 210 GLYCVNCEEYKDEKELLEN-QCCPIHLKP 237 (345)
Q Consensus 210 ~~yc~~c~~~l~d~el~~~-~~c~~~~~p 237 (345)
.+||-.|++.+.-.....+ ..|+.|+.-
T Consensus 2 ~ywCh~C~~~V~~~~~~~~~~~CP~C~~g 30 (35)
T PF14369_consen 2 RYWCHQCNRFVRIAPSPDSDVACPRCHGG 30 (35)
T ss_pred CEeCccCCCEeEeCcCCCCCcCCcCCCCc
Confidence 5899999998875432222 349999753
No 157
>cd06259 YdcF-like YdcF-like. YdcF-like is a large family of mainly bacterial proteins, with a few members found in fungi, plants, and archaea. Escherichia coli YdcF has been shown to bind S-adenosyl-L-methionine (AdoMet), but a biochemical function has not been idenitified. The family also includes Escherichia coli sanA and Salmonella typhimurium sfiX, which are involved in vancomycin resistance; sfiX may also be involved in murein synthesis.
Probab=47.25 E-value=1.6e+02 Score=24.32 Aligned_cols=103 Identities=15% Similarity=0.089 Sum_probs=65.6
Q ss_pred EEEEccCCCCCCcCchhHHHHHHHHHHHHHHHHHcCCeEEEEcCCCCcC------hHHHHHHHhCCCCHHHH--------
Q 046127 91 FVLTTPLYYVNAPPHMGSAYTTIAADAIARFQRLLGKKVIFITGTDEHG------EKIAAAAADGGSSPSEH-------- 156 (345)
Q Consensus 91 ~~I~~~~PypnG~LHIGHar~~i~~DvlaR~lr~~G~~V~~v~G~D~~G------~~I~~~A~~~g~~p~~~-------- 156 (345)
++|..+..+++|.+ ....--.+.-+++++......+.++|...++ ......+.+.|+++..+
T Consensus 3 IvVLG~~~~~~~~~----~~~~~R~~~a~~l~~~~~~~~ii~sGg~~~~~~~~ea~~m~~~l~~~gv~~~~I~~e~~s~~ 78 (150)
T cd06259 3 IVVLGGGVNGDGPS----PILAERLDAAAELYRAGPAPKLIVSGGQGPGEGYSEAEAMARYLIELGVPAEAILLEDRSTN 78 (150)
T ss_pred EEEeCCccCCCCCC----hHHHHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCCHHHHHHHHHHHcCCCHHHeeecCCCCC
Confidence 57777777888876 2223344555566666667778888887665 23444555677766543
Q ss_pred HHHHHHHHHHHHhhcCcccCccccCCChhhHHHHHHHHHHHHh
Q 046127 157 CDVVSQAYKTLWKDLDIAYDKFIRTTEPKHEAIVKEFYSSVLA 199 (345)
Q Consensus 157 ~~~~~~~~~~~l~~lgI~~D~f~~T~~~~~~~~v~~~~~~L~~ 199 (345)
..++.....+.++..|+ ....--+++.|...+..+|+++.-
T Consensus 79 T~ena~~~~~~~~~~~~--~~i~lVTs~~H~~Ra~~~~~~~~~ 119 (150)
T cd06259 79 TYENARFSAELLRERGI--RSVLLVTSAYHMPRALLIFRKAGL 119 (150)
T ss_pred HHHHHHHHHHHHHhcCC--CeEEEECCHHHHHHHHHHHHHcCC
Confidence 24445566667777777 433335677899998888888653
No 158
>TIGR02098 MJ0042_CXXC MJ0042 family finger-like domain. This domain contains a CXXCX(19)CXXC motif suggestive of both zinc fingers and thioredoxin, usually found at the N-terminus of prokaryotic proteins. One partially characterized gene, agmX, is among a large set in Myxococcus whose interruption affects adventurous gliding motility.
Probab=47.23 E-value=15 Score=23.61 Aligned_cols=28 Identities=21% Similarity=0.250 Sum_probs=17.9
Q ss_pred cccCCCCc--cchhhhhcC---CcCCCCCCCce
Q 046127 212 YCVNCEEY--KDEKELLEN---QCCPIHLKPCV 239 (345)
Q Consensus 212 yc~~c~~~--l~d~el~~~---~~c~~~~~pve 239 (345)
=||+|++. +++..+... ..|+.|+.++.
T Consensus 4 ~CP~C~~~~~v~~~~~~~~~~~v~C~~C~~~~~ 36 (38)
T TIGR02098 4 QCPNCKTSFRVVDSQLGANGGKVRCGKCGHVWY 36 (38)
T ss_pred ECCCCCCEEEeCHHHcCCCCCEEECCCCCCEEE
Confidence 48999983 344444333 36999998754
No 159
>COG0495 LeuS Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=46.69 E-value=4.6 Score=44.06 Aligned_cols=22 Identities=41% Similarity=0.844 Sum_probs=18.8
Q ss_pred HHhcCCCCcccccCCCCCCcccC
Q 046127 280 WIKSGLRDFSISRASVDWGIPVP 302 (345)
Q Consensus 280 wl~~gL~D~~ISR~~~~WGIpvP 302 (345)
++.-+|+||.+||| .+||.|+|
T Consensus 414 ~v~Y~lrdW~~srq-Rywg~pip 435 (814)
T COG0495 414 FVNYRLRDWLKSRQ-RYWGEPIP 435 (814)
T ss_pred EEecccchHHHHHH-HHhCCCcc
Confidence 34467999999999 59999999
No 160
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=46.21 E-value=1.5e+02 Score=24.78 Aligned_cols=65 Identities=17% Similarity=0.043 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHcCCeEEEEcCCCCcChHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhcCcccCc-cccCCChhhHHHHH
Q 046127 113 IAADAIARFQRLLGKKVIFITGTDEHGEKIAAAAADGGSSPSEHCDVVSQAYKTLWKDLDIAYDK-FIRTTEPKHEAIVK 191 (345)
Q Consensus 113 i~~DvlaR~lr~~G~~V~~v~G~D~~G~~I~~~A~~~g~~p~~~~~~~~~~~~~~l~~lgI~~D~-f~~T~~~~~~~~v~ 191 (345)
+-+++++++++..|++|...-+. .+++++++...+ -..|. -...++..|...+.
T Consensus 17 ~g~~iv~~~l~~~GfeVi~lg~~---------------~s~e~~v~aa~e----------~~adii~iSsl~~~~~~~~~ 71 (132)
T TIGR00640 17 RGAKVIATAYADLGFDVDVGPLF---------------QTPEEIARQAVE----------ADVHVVGVSSLAGGHLTLVP 71 (132)
T ss_pred HHHHHHHHHHHhCCcEEEECCCC---------------CCHHHHHHHHHH----------cCCCEEEEcCchhhhHHHHH
Confidence 46799999999999999965433 234444433332 12221 12233446777788
Q ss_pred HHHHHHHhCCC
Q 046127 192 EFYSSVLANGD 202 (345)
Q Consensus 192 ~~~~~L~~kG~ 202 (345)
.++..|.++|.
T Consensus 72 ~~~~~L~~~g~ 82 (132)
T TIGR00640 72 ALRKELDKLGR 82 (132)
T ss_pred HHHHHHHhcCC
Confidence 88888887764
No 161
>cd02156 nt_trans nucleotidyl transferase superfamily. nt_trans (nucleotidyl transferase) This superfamily includes the class I amino-acyl tRNA synthetases, pantothenate synthetase (PanC), ATP sulfurylase, and the cytidylyltransferases, all of which have a conserved dinucleotide-binding domain.
Probab=45.66 E-value=43 Score=26.40 Aligned_cols=9 Identities=33% Similarity=0.383 Sum_probs=8.4
Q ss_pred CcCchhHHH
Q 046127 102 APPHMGSAY 110 (345)
Q Consensus 102 G~LHIGHar 110 (345)
|++|+||..
T Consensus 9 dp~H~GH~~ 17 (105)
T cd02156 9 GYLHIGHAK 17 (105)
T ss_pred CCCCHHHHH
Confidence 899999987
No 162
>TIGR01206 lysW lysine biosynthesis protein LysW. This very small, poorly characterized protein has been shown essential in Thermus thermophilus for an unusual pathway of Lys biosynthesis from aspartate by way of alpha-aminoadipate (AAA) rather than diaminopimelate. It is found also in Deinococcus radiodurans and Pyrococcus horikoshii, which appear to share the AAA pathway.
Probab=45.10 E-value=7.5 Score=27.69 Aligned_cols=39 Identities=21% Similarity=0.177 Sum_probs=25.3
Q ss_pred ccccCCCCccch--hhhhcCCcCCCCCCCceEeeccccccchh
Q 046127 211 LYCVNCEEYKDE--KELLENQCCPIHLKPCVARKEDNYFFALS 251 (345)
Q Consensus 211 ~yc~~c~~~l~d--~el~~~~~c~~~~~pve~r~~~~~f~~l~ 251 (345)
.=||.|++-+.= ..+-+.-.|+.||..++.+...- ++|.
T Consensus 3 ~~CP~CG~~iev~~~~~GeiV~Cp~CGaeleVv~~~p--~~L~ 43 (54)
T TIGR01206 3 FECPDCGAEIELENPELGELVICDECGAELEVVSLDP--LRLE 43 (54)
T ss_pred cCCCCCCCEEecCCCccCCEEeCCCCCCEEEEEeCCC--CEEE
Confidence 348999986532 11111134999999999988777 4443
No 163
>PLN02674 adenylate kinase
Probab=43.80 E-value=65 Score=30.08 Aligned_cols=118 Identities=14% Similarity=0.050 Sum_probs=63.9
Q ss_pred cChHHHHHHHhCCCCHHHHHHHHHHHHHHHHh-hcCcccCccccCCChhhHHHHHHHHHHHHhCCC-----ee-------
Q 046127 138 HGEKIAAAAADGGSSPSEHCDVVSQAYKTLWK-DLDIAYDKFIRTTEPKHEAIVKEFYSSVLANGD-----IY------- 204 (345)
Q Consensus 138 ~G~~I~~~A~~~g~~p~~~~~~~~~~~~~~l~-~lgI~~D~f~~T~~~~~~~~v~~~~~~L~~kG~-----iy------- 204 (345)
.|..+.....+-..-|.+++..+......... .-|+-.|-|++|.+ .++.+-..|...|. |+
T Consensus 76 ~g~~i~~~~~~G~lvpd~iv~~lv~~~l~~~~~~~g~ilDGfPRt~~-----Qa~~l~~~l~~~~~~~d~vi~l~v~~~~ 150 (244)
T PLN02674 76 LGIKAKEAMDKGELVSDDLVVGIIDEAMKKPSCQKGFILDGFPRTVV-----QAQKLDEMLAKQGAKIDKVLNFAIDDAI 150 (244)
T ss_pred hhHHHHHHHHcCCccCHHHHHHHHHHHHhCcCcCCcEEEeCCCCCHH-----HHHHHHHHHHhcCCCCCEEEEEECCHHH
Confidence 45555555544444566666555443332211 23555788887753 22222222333332 11
Q ss_pred --ecccCcccccCCCCccchhhh--hcCCcCCCCCCCceEeeccccccchhHhHHHHHHHHhcC
Q 046127 205 --KADYEGLYCVNCEEYKDEKEL--LENQCCPIHLKPCVARKEDNYFFALSKYQKLLEDTLTEN 264 (345)
Q Consensus 205 --~~~~~~~yc~~c~~~l~d~el--~~~~~c~~~~~pve~r~~~~~f~~l~~~~~~L~e~l~~~ 264 (345)
++-..-..|+.|++.+....- ...++|..|+.+++.|.-++ .+..+.+|..|-+..
T Consensus 151 l~~Rl~gR~~~~~~g~~yn~~~~pp~~~~~~~~~g~~L~~R~DD~----~e~i~~RL~~Y~~~t 210 (244)
T PLN02674 151 LEERITGRWIHPSSGRTYHTKFAPPKVPGVDDVTGEPLIQRKDDT----AAVLKSRLEAFHKQT 210 (244)
T ss_pred HHHHHhccccccccCCccccccCCCcccCcccccCCccccCCCCC----HHHHHHHHHHHHHHh
Confidence 111233568888875532211 01356888999998888886 477888888887654
No 164
>COG1439 Predicted nucleic acid-binding protein, consists of a PIN domain and a Zn-ribbon module [General function prediction only]
Probab=43.77 E-value=19 Score=32.05 Aligned_cols=34 Identities=21% Similarity=0.347 Sum_probs=24.8
Q ss_pred cccCcccccCCCCccchhhhhcCCcCCCCCCCceEeec
Q 046127 206 ADYEGLYCVNCEEYKDEKELLENQCCPIHLKPCVARKE 243 (345)
Q Consensus 206 ~~~~~~yc~~c~~~l~d~el~~~~~c~~~~~pve~r~~ 243 (345)
.-.-++-|.+|.+..+ .+...|+.||.++..+..
T Consensus 135 v~~w~~rC~GC~~~f~----~~~~~Cp~CG~~~~~~~~ 168 (177)
T COG1439 135 VRKWRLRCHGCKRIFP----EPKDFCPICGSPLKRKRV 168 (177)
T ss_pred EeeeeEEEecCceecC----CCCCcCCCCCCceEEeee
Confidence 3344667999999888 334679999999766543
No 165
>KOG2623 consensus Tyrosyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=43.50 E-value=51 Score=33.05 Aligned_cols=75 Identities=15% Similarity=0.208 Sum_probs=38.4
Q ss_pred EEEEccCCCCCCcCchhHHHHHHHHHHHHHHHHHcCCeEEEEcCCC--CcChHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Q 046127 91 FVLTTPLYYVNAPPHMGSAYTTIAADAIARFQRLLGKKVIFITGTD--EHGEKIAAAAADGGSSPSEHCDVVSQAYKTLW 168 (345)
Q Consensus 91 ~~I~~~~PypnG~LHIGHar~~i~~DvlaR~lr~~G~~V~~v~G~D--~~G~~I~~~A~~~g~~p~~~~~~~~~~~~~~l 168 (345)
.+-+..=|+ --.||+||....+ .+.+++ ..||+++-+.|-- ..|+|--.+-+ .+.--.+..+.++..|.+++
T Consensus 65 ~vYcGfDPT-A~SLHvGNLl~lm---~L~hfq-r~Gh~~ialIGgATa~vGDPSGrktE-R~~l~~d~~~~N~~~I~~ql 138 (467)
T KOG2623|consen 65 YVYCGFDPT-AESLHVGNLLALM---VLIHFQ-RAGHRPIALIGGATASVGDPSGRKTE-RGQLAEDTREANSRSITQQL 138 (467)
T ss_pred eEEecCCCc-HHhhhhcchHHHH---HHHHHH-HcCCCceEEeccccccccCCCCCccc-hhhhhhHHHHHhHHHHHHHH
Confidence 333444333 2459999986543 456664 5699988776632 23443211111 11112344455555555555
Q ss_pred hhc
Q 046127 169 KDL 171 (345)
Q Consensus 169 ~~l 171 (345)
.++
T Consensus 139 ~~i 141 (467)
T KOG2623|consen 139 CKI 141 (467)
T ss_pred HHH
Confidence 554
No 166
>PF10929 DUF2811: Protein of unknown function (DUF2811); InterPro: IPR021231 This is a bacterial family of uncharacterised proteins.
Probab=42.58 E-value=31 Score=24.85 Aligned_cols=42 Identities=17% Similarity=0.407 Sum_probs=27.8
Q ss_pred hHhHHHHHHHHhcCCCcccChHHHHHHHHHHh-cCCCCccccc
Q 046127 251 SKYQKLLEDTLTENPDFVQPSFRLNEVQGWIK-SGLRDFSISR 292 (345)
Q Consensus 251 ~~~~~~L~e~l~~~~~~~~P~~~~~~~~~wl~-~gL~D~~ISR 292 (345)
+.+.+.|.+|++++|+|=+-..+...+..||- +|..|++++|
T Consensus 8 e~L~~~m~~fie~hP~WDQ~Rl~~aALa~FL~QnG~~~r~~~r 50 (57)
T PF10929_consen 8 EDLHQAMKDFIETHPNWDQYRLFQAALAGFLLQNGCQDRAVTR 50 (57)
T ss_pred HHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCchhHHHHH
Confidence 46788999999998763222222333345544 7888999988
No 167
>PRK00420 hypothetical protein; Validated
Probab=42.45 E-value=19 Score=29.65 Aligned_cols=47 Identities=19% Similarity=0.208 Sum_probs=29.5
Q ss_pred HHHHHHHHhCCCeeecccCcccccCCCCccchhhhhcCCcCCCCCCCceEee
Q 046127 191 KEFYSSVLANGDIYKADYEGLYCVNCEEYKDEKELLENQCCPIHLKPCVARK 242 (345)
Q Consensus 191 ~~~~~~L~~kG~iy~~~~~~~yc~~c~~~l~d~el~~~~~c~~~~~pve~r~ 242 (345)
.+.+.+++.+|.--. .-.||.|+..+..- -.+.-.|+.||.++....
T Consensus 8 ~k~~a~~Ll~Ga~ml----~~~CP~Cg~pLf~l-k~g~~~Cp~Cg~~~~v~~ 54 (112)
T PRK00420 8 VKKAAELLLKGAKML----SKHCPVCGLPLFEL-KDGEVVCPVHGKVYIVKS 54 (112)
T ss_pred HHHHHHHHHhHHHHc----cCCCCCCCCcceec-CCCceECCCCCCeeeecc
Confidence 344455555565553 36799999877742 122356999998766543
No 168
>COG3286 Uncharacterized protein conserved in archaea [Function unknown]
Probab=42.19 E-value=37 Score=30.58 Aligned_cols=88 Identities=15% Similarity=0.136 Sum_probs=49.6
Q ss_pred HHHHHHHHHHHHHHHcCCeEEEEcCCCCcChHHHHHHHhCCCCHH---HHHHHHHHHHHHH-HhhcCcccCccccCCChh
Q 046127 110 YTTIAADAIARFQRLLGKKVIFITGTDEHGEKIAAAAADGGSSPS---EHCDVVSQAYKTL-WKDLDIAYDKFIRTTEPK 185 (345)
Q Consensus 110 r~~i~~DvlaR~lr~~G~~V~~v~G~D~~G~~I~~~A~~~g~~p~---~~~~~~~~~~~~~-l~~lgI~~D~f~~T~~~~ 185 (345)
++.|..|+++..++.+||+|..--|+= +.+.+.. +++.+.++.+++. +..++-..-...-.-+..
T Consensus 86 ~p~Vp~~vl~daLk~~GyrVevr~~~l-----------~T~ap~~ev~E~vreLse~~~E~~~~~lt~~vrklVv~~S~~ 154 (204)
T COG3286 86 SPNVPPDVLIDALKLLGYRVEVRGGEL-----------KTNAPWSEVVELVRELSEVYREARFQPLTRQVRKLVVAVSIV 154 (204)
T ss_pred cCCCCHHHHHHHHHhCCceEEeeCcee-----------ecCCCHHHHHHHHHHHHHHHHHHHhccccchhhhhhhhhhhH
Confidence 445778999999999999999888772 2233332 2333333333332 122211111111112223
Q ss_pred hHHHHHHHHHHHHhCCCeeeccc
Q 046127 186 HEAIVKEFYSSVLANGDIYKADY 208 (345)
Q Consensus 186 ~~~~v~~~~~~L~~kG~iy~~~~ 208 (345)
|.--+.++...+.+.|++-+++.
T Consensus 155 ~~~~~dd~~eeave~Gll~e~E~ 177 (204)
T COG3286 155 YGLDPDDAAEEAVELGLLEEGED 177 (204)
T ss_pred hCCCHHHHHHHHHHhhhhhccch
Confidence 34445677888888998877665
No 169
>PF14803 Nudix_N_2: Nudix N-terminal; PDB: 3CNG_C.
Probab=42.16 E-value=12 Score=23.96 Aligned_cols=24 Identities=17% Similarity=0.426 Sum_probs=9.6
Q ss_pred cccCCCCccchhhhhcC----CcCCCCC
Q 046127 212 YCVNCEEYKDEKELLEN----QCCPIHL 235 (345)
Q Consensus 212 yc~~c~~~l~d~el~~~----~~c~~~~ 235 (345)
||+.|+..|.-.-..++ ..|+.||
T Consensus 2 fC~~CG~~l~~~ip~gd~r~R~vC~~Cg 29 (34)
T PF14803_consen 2 FCPQCGGPLERRIPEGDDRERLVCPACG 29 (34)
T ss_dssp B-TTT--B-EEE--TT-SS-EEEETTTT
T ss_pred ccccccChhhhhcCCCCCccceECCCCC
Confidence 78888877643322222 2477666
No 170
>TIGR00125 cyt_tran_rel cytidyltransferase-related domain. Protein families that contain at least one copy of this domain include citrate lyase ligase, pantoate-beta-alanine ligase, glycerol-3-phosphate cytidyltransferase, ADP-heptose synthase, phosphocholine cytidylyltransferase, lipopolysaccharide core biosynthesis protein KdtB, the bifunctional protein NadR, and a number whose function is unknown. Many of these proteins are known to use CTP or ATP and release pyrophosphate.
Probab=42.01 E-value=38 Score=23.95 Aligned_cols=9 Identities=33% Similarity=0.545 Sum_probs=7.9
Q ss_pred CcCchhHHH
Q 046127 102 APPHMGSAY 110 (345)
Q Consensus 102 G~LHIGHar 110 (345)
+++|.||..
T Consensus 9 dp~H~GH~~ 17 (66)
T TIGR00125 9 DPFHLGHLD 17 (66)
T ss_pred CCCCHHHHH
Confidence 679999987
No 171
>PF14671 DSPn: Dual specificity protein phosphatase, N-terminal half; PDB: 1OHD_A 1OHE_A 1OHC_A.
Probab=41.11 E-value=32 Score=29.44 Aligned_cols=38 Identities=18% Similarity=0.236 Sum_probs=19.6
Q ss_pred CCCcCchhHHHHHHH-HHHHHHHHHHcCCeEEEEcCCCC
Q 046127 100 VNAPPHMGSAYTTIA-ADAIARFQRLLGKKVIFITGTDE 137 (345)
Q Consensus 100 pnG~LHIGHar~~i~-~DvlaR~lr~~G~~V~~v~G~D~ 137 (345)
=-|||||||++.+.. -+-+-+--...+.+|.+-++.|.
T Consensus 40 DFGPlnL~~lyrfc~~l~~~L~~~~~~~k~iv~yts~d~ 78 (141)
T PF14671_consen 40 DFGPLNLAQLYRFCCKLNKKLKSPELKKKKIVHYTSSDP 78 (141)
T ss_dssp ------HHHHHHHHHHHHHHHH-GGGTTSEEEEEE-S-H
T ss_pred cCCCccHHHHHHHHHHHHHHHcCHHhcCCeEEEECCCCh
Confidence 349999999976532 23333333458999999999875
No 172
>PRK13671 hypothetical protein; Provisional
Probab=41.07 E-value=1.1e+02 Score=29.57 Aligned_cols=102 Identities=16% Similarity=0.166 Sum_probs=55.8
Q ss_pred CcCchhHHHHHHHHHHHHHHHHHcC-CeEEEEcCCC--CcChHH-------HHHHHhCCCC-----HH----HHHHHHHH
Q 046127 102 APPHMGSAYTTIAADAIARFQRLLG-KKVIFITGTD--EHGEKI-------AAAAADGGSS-----PS----EHCDVVSQ 162 (345)
Q Consensus 102 G~LHIGHar~~i~~DvlaR~lr~~G-~~V~~v~G~D--~~G~~I-------~~~A~~~g~~-----p~----~~~~~~~~ 162 (345)
.|+|.||++-. ....+..| -.|.++...+ .-|.+. ...|.+.|.+ |- +-++.+..
T Consensus 10 NP~H~GHl~~~------~~a~~~~~~d~vi~vpSg~~~qrg~pa~~~~~~R~~ma~~~G~DLViELP~~~a~~sAe~FA~ 83 (298)
T PRK13671 10 NPFHNGHIYQI------NYIKNKFPNEKIIVILSGKYTQRGEIAVASFEKRKKIALKYGVDKVIKLPFEYATQAAHIFAK 83 (298)
T ss_pred CCccHHHHHHH------HHHHHhcCCCEEEEEECcCCCCCCCCCCCCHHHHHHHHHHcCCCEEEeccHHHHhhchHHHHH
Confidence 68999999732 22223333 4555544333 233332 1233445654 33 33477778
Q ss_pred HHHHHHhhcCcccCccccCCCh--hhH----------HHHHHHHHHHHhCCCeeecccC
Q 046127 163 AYKTLWKDLDIAYDKFIRTTEP--KHE----------AIVKEFYSSVLANGDIYKADYE 209 (345)
Q Consensus 163 ~~~~~l~~lgI~~D~f~~T~~~--~~~----------~~v~~~~~~L~~kG~iy~~~~~ 209 (345)
.=...|+.+||+.=.|..++.. ... +..++.+++.+++|.-|-....
T Consensus 84 gaV~lL~~lgvd~l~FGsE~~d~~~l~~~a~~l~~~~~~~~~~l~~~l~~G~Sy~~a~~ 142 (298)
T PRK13671 84 GAIKKLNKEKIDKLIFGSESNDIELMYKIANTIKENEEEYNQLLKKNLKQGYSFPKASS 142 (298)
T ss_pred HHHHHHHHcCCCEEEECCCCCCHHHHHHHHHHHHhCcHHHHHHHHHHHHCCCCHHHHHH
Confidence 8889999999655467665422 121 2333445556678877755443
No 173
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=40.69 E-value=2.2e+02 Score=23.91 Aligned_cols=35 Identities=23% Similarity=0.166 Sum_probs=23.9
Q ss_pred CCCEEEEccCCCCCCcCchhHHHHHHHHHHHHHHHHHcCCeEEEE
Q 046127 88 ADPFVLTTPLYYVNAPPHMGSAYTTIAADAIARFQRLLGKKVIFI 132 (345)
Q Consensus 88 ~~~~~I~~~~PypnG~LHIGHar~~i~~DvlaR~lr~~G~~V~~v 132 (345)
+.++++.+++ |..|- +-..++++++|..|++|.+.
T Consensus 3 ~~~vl~~~~~----gD~H~------lG~~iv~~~lr~~G~eVi~L 37 (137)
T PRK02261 3 KKTVVLGVIG----ADCHA------VGNKILDRALTEAGFEVINL 37 (137)
T ss_pred CCEEEEEeCC----CChhH------HHHHHHHHHHHHCCCEEEEC
Confidence 4556555443 77763 24467788999999999964
No 174
>PF05502 Dynactin_p62: Dynactin p62 family; InterPro: IPR008603 Dynactin is a multi-subunit complex and a required cofactor for most, or all, o f the cellular processes powered by the microtubule-based motor cytoplasmic dyn ein. p62 binds directly to the Arp1 subunit of dynactin [, ].
Probab=40.33 E-value=20 Score=36.91 Aligned_cols=40 Identities=30% Similarity=0.527 Sum_probs=28.8
Q ss_pred ecccCcccccCCCCccchhhhhc--C------CcCCCCCCCceEeecc
Q 046127 205 KADYEGLYCVNCEEYKDEKELLE--N------QCCPIHLKPCVARKED 244 (345)
Q Consensus 205 ~~~~~~~yc~~c~~~l~d~el~~--~------~~c~~~~~pve~r~~~ 244 (345)
..+...|||++|-.-++..++.. + .-||.|..++.++...
T Consensus 21 ~~Ei~~~yCp~CL~~~p~~e~~~~~nrC~r~Cf~CP~C~~~L~~~~~~ 68 (483)
T PF05502_consen 21 SEEIDSYYCPNCLFEVPSSEARSEKNRCSRNCFDCPICFSPLSVRASD 68 (483)
T ss_pred ccccceeECccccccCChhhheeccceeccccccCCCCCCcceeEecc
Confidence 34566899999998888887632 1 1278888888877555
No 175
>PF05191 ADK_lid: Adenylate kinase, active site lid; InterPro: IPR007862 Adenylate kinases (ADK; 2.7.4.3 from EC) are phosphotransferases that catalyse the Mg-dependent reversible conversion of ATP and AMP to two molecules of ADP, an essential reaction for many processes in living cells. In large variants of adenylate kinase, the AMP and ATP substrates are buried in a domain that undergoes conformational changes from an open to a closed state when bound to substrate; the ligand is then contained within a highly specific environment required for catalysis. Adenylate kinase is a 3-domain protein consisting of a large central CORE domain flanked by a LID domain on one side and the AMP-binding NMPbind domain on the other []. The LID domain binds ATP and covers the phosphates at the active site. The substrates first bind the CORE domain, followed by closure of the active site by the LID and NMPbind domains. Comparisons of adenylate kinases have revealed a particular divergence in the active site lid. In some organisms, particularly the Gram-positive bacteria, residues in the lid domain have been mutated to cysteines and these cysteine residues (two CX(n)C motifs) are responsible for the binding of a zinc ion. The bound zinc ion in the lid domain is clearly structurally homologous to Zinc-finger domains. However, it is unclear whether the adenylate kinase lid is a novel zinc-finger DNA/RNA binding domain, or that the lid bound zinc serves a purely structural function [].; GO: 0004017 adenylate kinase activity; PDB: 3BE4_A 2OSB_B 2ORI_A 2EU8_A 3DL0_A 1P3J_A 2QAJ_A 2OO7_A 2P3S_A 3DKV_A ....
Probab=40.05 E-value=16 Score=23.74 Aligned_cols=32 Identities=19% Similarity=0.149 Sum_probs=21.4
Q ss_pred ccccCCCCccchhhh--hcCCcCCCCCCCceEee
Q 046127 211 LYCVNCEEYKDEKEL--LENQCCPIHLKPCVARK 242 (345)
Q Consensus 211 ~yc~~c~~~l~d~el--~~~~~c~~~~~pve~r~ 242 (345)
+.|++|+..+-.... ..++.|..||.++..|+
T Consensus 2 r~C~~Cg~~Yh~~~~pP~~~~~Cd~cg~~L~qR~ 35 (36)
T PF05191_consen 2 RICPKCGRIYHIEFNPPKVEGVCDNCGGELVQRK 35 (36)
T ss_dssp EEETTTTEEEETTTB--SSTTBCTTTTEBEBEEG
T ss_pred cCcCCCCCccccccCCCCCCCccCCCCCeeEeCC
Confidence 358889887654322 12478999999877663
No 176
>COG3357 Predicted transcriptional regulator containing an HTH domain fused to a Zn-ribbon [Transcription]
Probab=39.67 E-value=15 Score=28.93 Aligned_cols=61 Identities=11% Similarity=0.154 Sum_probs=41.2
Q ss_pred hhHHHHHHHHHHHHhCCCeeecccCcccccCCCCccchhhhhcCCcCCCCCCCceEeeccccccc
Q 046127 185 KHEAIVKEFYSSVLANGDIYKADYEGLYCVNCEEYKDEKELLENQCCPIHLKPCVARKEDNYFFA 249 (345)
Q Consensus 185 ~~~~~v~~~~~~L~~kG~iy~~~~~~~yc~~c~~~l~d~el~~~~~c~~~~~pve~r~~~~~f~~ 249 (345)
.-++.+.-+-+.|..+|..-.- .-.-|.+||-...+..+.-+.+|+.|.+ ||.+.+.++++
T Consensus 35 ~v~~~L~hiak~lkr~g~~Llv--~Pa~CkkCGfef~~~~ik~pSRCP~CKS--E~Ie~prF~ie 95 (97)
T COG3357 35 EVYDHLEHIAKSLKRKGKRLLV--RPARCKKCGFEFRDDKIKKPSRCPKCKS--EWIEEPRFVIE 95 (97)
T ss_pred HHHHHHHHHHHHHHhCCceEEe--cChhhcccCccccccccCCcccCCcchh--hcccCCceeec
Confidence 3445556666777777764332 2345999997766656666788999964 67777777654
No 177
>PF07394 DUF1501: Protein of unknown function (DUF1501); InterPro: IPR010869 This family contains a number of hypothetical bacterial proteins of unknown function approximately 400 residues long.
Probab=39.37 E-value=84 Score=31.00 Aligned_cols=60 Identities=22% Similarity=0.131 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHHcCCeEEEEc--CCCCcChHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhcCcccC
Q 046127 112 TIAADAIARFQRLLGKKVIFIT--GTDEHGEKIAAAAADGGSSPSEHCDVVSQAYKTLWKDLDIAYD 176 (345)
Q Consensus 112 ~i~~DvlaR~lr~~G~~V~~v~--G~D~~G~~I~~~A~~~g~~p~~~~~~~~~~~~~~l~~lgI~~D 176 (345)
....=+++|-+...|-+|.++. |||.|+......+... .-.++-+..|.++|+..|+.-+
T Consensus 231 ~~~~~l~a~~~~~~g~~v~~V~~gGwDTH~~~~~~~~~ll-----~~L~~alaaf~~dL~~~g~~d~ 292 (392)
T PF07394_consen 231 FGQQLLLARRLIEAGVRVVFVSLGGWDTHSNQGNRHARLL-----PELDQALAAFIQDLKERGLLDD 292 (392)
T ss_pred HHHHHHHHHHHhhcCCEEEEECCCCccCccccHhHHHHHH-----HHHHHHHHHHHHHHHhcCCcCc
Confidence 3344467777777889998876 9999985544433322 2345567788889999887655
No 178
>COG0375 HybF Zn finger protein HypA/HybF (possibly regulating hydrogenase expression) [General function prediction only]
Probab=39.27 E-value=23 Score=29.24 Aligned_cols=39 Identities=18% Similarity=0.267 Sum_probs=26.8
Q ss_pred eecccCcccccCCCCccchhhhhcCCcCCCCCCC-ceEeecc
Q 046127 204 YKADYEGLYCVNCEEYKDEKELLENQCCPIHLKP-CVARKED 244 (345)
Q Consensus 204 y~~~~~~~yc~~c~~~l~d~el~~~~~c~~~~~p-ve~r~~~ 244 (345)
.+......||..|+.++...+.. ..||.|+++ +.++.-+
T Consensus 64 Ie~~p~~~~C~~C~~~~~~e~~~--~~CP~C~s~~~~i~~G~ 103 (115)
T COG0375 64 IEEEPAECWCLDCGQEVELEELD--YRCPKCGSINLRIIGGD 103 (115)
T ss_pred EEEeccEEEeccCCCeecchhhe--eECCCCCCCceEEecCC
Confidence 34446789999999888766654 459999854 4444333
No 179
>cd01675 RNR_III Class III ribonucleotide reductase. Ribonucleotide reductase (RNR) catalyzes the reductive synthesis of deoxyribonucleotides from their corresponding ribonucleotides. It provides the precursors necessary for DNA synthesis. RNRs are separated into three classes based on their metallocofactor usage. Class I RNRs, found in eukaryotes, bacteria, and bacteriophage, use a diiron-tyrosyl radical. Class II RNRs, found in bacteria, bacteriophage, algae and archaea, use coenzyme B12 (adenosylcobalamin, AdoCbl). Class III RNRs, found in strict or facultative anaerobic bacteria, bacteriophage, and archaea, use an FeS cluster and S-adenosylmethionine to generate a glycyl radical. Many organisms have more than one class of RNR present in their genomes. All three RNRs have a ten-stranded alpha-beta barrel domain that is structurally similar to the domain of PFL (pyruvate formate lyase). The class III enzyme from phage T4 consists of two subunits, this model covers the larger subunit w
Probab=38.52 E-value=43 Score=35.13 Aligned_cols=48 Identities=19% Similarity=0.242 Sum_probs=35.5
Q ss_pred hHHHHHHHHHHHHhCCCee-ecccCcccccCCCCccchhhhhcCCcCCCCCCC
Q 046127 186 HEAIVKEFYSSVLANGDIY-KADYEGLYCVNCEEYKDEKELLENQCCPIHLKP 237 (345)
Q Consensus 186 ~~~~v~~~~~~L~~kG~iy-~~~~~~~yc~~c~~~l~d~el~~~~~c~~~~~p 237 (345)
..+.+.++++...++|.+| --..+...|..|+.. .. .....||.||..
T Consensus 493 n~~al~~lv~~a~~~~~~y~~~~~p~~~C~~CG~~-~~---~~~~~CP~CGs~ 541 (555)
T cd01675 493 NPEALEALVKKAAKRGVIYFGINTPIDICNDCGYI-GE---GEGFKCPKCGSE 541 (555)
T ss_pred CHHHHHHHHHHHHHcCCceEEEecCCccCCCCCCC-Cc---CCCCCCcCCCCc
Confidence 4578888999999998887 566777799999952 21 112569999954
No 180
>cd02070 corrinoid_protein_B12-BD B12 binding domain of corrinoid proteins. A family of small methanogenic corrinoid proteins that bind methyl-Co(III) 5-hydroxybenzimidazolylcobamide as a cofactor. They play a role on the methanogenesis from trimethylamine, dimethylamine or monomethylamine, which is initiated by a series of corrinoid-dependent methyltransferases.
Probab=37.59 E-value=2.9e+02 Score=24.48 Aligned_cols=80 Identities=21% Similarity=0.192 Sum_probs=45.8
Q ss_pred CCCEEEEccCCCCCCcCchhHHHHHHHHHHHHHHHHHcCCeEEEEcCCCCcChHHHHHHHhCCCCHHHHHHHHHHHHHHH
Q 046127 88 ADPFVLTTPLYYVNAPPHMGSAYTTIAADAIARFQRLLGKKVIFITGTDEHGEKIAAAAADGGSSPSEHCDVVSQAYKTL 167 (345)
Q Consensus 88 ~~~~~I~~~~PypnG~LHIGHar~~i~~DvlaR~lr~~G~~V~~v~G~D~~G~~I~~~A~~~g~~p~~~~~~~~~~~~~~ 167 (345)
+.++++.+++ |..|- +-..+++.+++..|++|.+. |.| .+++++++...+
T Consensus 82 ~~~vl~~~~~----gd~H~------lG~~~v~~~l~~~G~~vi~l-G~~--------------~p~~~l~~~~~~----- 131 (201)
T cd02070 82 KGKVVIGTVE----GDIHD------IGKNLVATMLEANGFEVIDL-GRD--------------VPPEEFVEAVKE----- 131 (201)
T ss_pred CCeEEEEecC----Cccch------HHHHHHHHHHHHCCCEEEEC-CCC--------------CCHHHHHHHHHH-----
Confidence 4677777554 88885 44567788899999999643 222 334444433322
Q ss_pred HhhcCcccCc-cccCCChhhHHHHHHHHHHHHhCCC
Q 046127 168 WKDLDIAYDK-FIRTTEPKHEAIVKEFYSSVLANGD 202 (345)
Q Consensus 168 l~~lgI~~D~-f~~T~~~~~~~~v~~~~~~L~~kG~ 202 (345)
..+|. ..+.+...+...+.++++.|.+.+.
T Consensus 132 -----~~~d~v~lS~~~~~~~~~~~~~i~~lr~~~~ 162 (201)
T cd02070 132 -----HKPDILGLSALMTTTMGGMKEVIEALKEAGL 162 (201)
T ss_pred -----cCCCEEEEeccccccHHHHHHHHHHHHHCCC
Confidence 12331 1112223456667778888877653
No 181
>PF06940 DUF1287: Domain of unknown function (DUF1287); InterPro: IPR009706 This family consists of several hypothetical bacterial proteins of around 200 residues in length. The function of this family is unknown.
Probab=37.03 E-value=29 Score=30.32 Aligned_cols=28 Identities=25% Similarity=0.380 Sum_probs=21.1
Q ss_pred cCCCCCCc--CchhHHHHHHHHHHHHHHHHHcCCe
Q 046127 96 PLYYVNAP--PHMGSAYTTIAADAIARFQRLLGKK 128 (345)
Q Consensus 96 ~~PypnG~--LHIGHar~~i~~DvlaR~lr~~G~~ 128 (345)
..+||||+ .+-| +..|++.|.+|..|++
T Consensus 21 ~~~YP~GDvp~~~G-----VCTDVViRA~R~~g~D 50 (164)
T PF06940_consen 21 SIGYPNGDVPDNTG-----VCTDVVIRAYRDAGYD 50 (164)
T ss_pred ecCCCCCCCCCCCC-----ccHHHHHHHHHHcCCC
Confidence 45689997 5555 8899999988766554
No 182
>PF03698 UPF0180: Uncharacterised protein family (UPF0180); InterPro: IPR005370 The members of this family are small uncharacterised proteins.
Probab=35.84 E-value=49 Score=25.51 Aligned_cols=47 Identities=21% Similarity=0.248 Sum_probs=28.9
Q ss_pred HHHHHHHcCCeEEE--------------EcCCCCcChHHHHHH------HhCCCCHHHHHHHHHHHH
Q 046127 118 IARFQRLLGKKVIF--------------ITGTDEHGEKIAAAA------ADGGSSPSEHCDVVSQAY 164 (345)
Q Consensus 118 laR~lr~~G~~V~~--------------v~G~D~~G~~I~~~A------~~~g~~p~~~~~~~~~~~ 164 (345)
+..+|+.+||+|.- ++|-|..=+-++... ...|++++++++...+.+
T Consensus 13 v~~~L~~~GyeVv~l~~~~~~~~~daiVvtG~~~n~mg~~d~~~~~pVInA~G~T~eEI~~~v~~rl 79 (80)
T PF03698_consen 13 VKEALREKGYEVVDLENEQDLQNVDAIVVTGQDTNMMGIQDTSTKVPVINASGLTAEEIVQEVEERL 79 (80)
T ss_pred HHHHHHHCCCEEEecCCccccCCcCEEEEECCCcccccccccccCceEEecCCCCHHHHHHHHHHhh
Confidence 56788999998875 344333211122211 246899999998876653
No 183
>PF13713 BRX_N: Transcription factor BRX N-terminal domain
Probab=34.11 E-value=25 Score=23.30 Aligned_cols=26 Identities=27% Similarity=0.401 Sum_probs=20.9
Q ss_pred ccccccchhhhcchHHHHHHHHHHHh
Q 046127 8 ATPVKHSEEQTLSLQKEFEEMAARIN 33 (345)
Q Consensus 8 ~~~~~~~~~~~~~~~k~~~~~~~~~~ 33 (345)
|+--+++-|--.||.-+||+||+++-
T Consensus 4 aak~kaaKe~IKsLt~QlK~maekl~ 29 (39)
T PF13713_consen 4 AAKCKAAKEVIKSLTAQLKDMAEKLP 29 (39)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHhCc
Confidence 34456677888999999999999983
No 184
>TIGR03037 anthran_nbaC 3-hydroxyanthranilate 3,4-dioxygenase. Members of this protein family, from both bacteria and eukaryotes, are the enzyme 3-hydroxyanthranilate 3,4-dioxygenase. This enzyme acts on the tryptophan metabolite 3-hydroxyanthranilate and produces 2-amino-3-carboxymuconate semialdehyde, which can rearrange spontaneously to quinolinic acid and feed into nicotinamide biosynthesis, or undergo further enzymatic degradation.
Probab=33.84 E-value=16 Score=31.89 Aligned_cols=18 Identities=17% Similarity=0.311 Sum_probs=13.7
Q ss_pred cccCcccccCCCCccchh
Q 046127 206 ADYEGLYCVNCEEYKDEK 223 (345)
Q Consensus 206 ~~~~~~yc~~c~~~l~d~ 223 (345)
.++-.|||++|+..+-+.
T Consensus 110 ~d~~~wyc~~c~~~~~e~ 127 (159)
T TIGR03037 110 LDGFQWFCPQCGHKLHRA 127 (159)
T ss_pred CcceEEECCCCCCeEEEE
Confidence 455689999999877653
No 185
>PF04405 ScdA_N: Domain of Unknown function (DUF542) ; InterPro: IPR007500 This is a domain of unknown function found at the N terminus of genes involved in cell wall development and nitrous oxide protection. ScdA is required for normal cell growth and development; mutants have an increased level of peptidoglycan cross-linking and aberrant cellular morphology suggesting a role for ScdA in cell wall metabolism []. NorA1, NorA2, and YtfE are involved in the nitrous oxide response. NorA1 and NorA2, which are similar to YtfE, are co-transcribed with the membrane-bound nitrous oxide (NO) reductases. The genes appear to be involved in NO protection but their function is unknown [, ].
Probab=33.73 E-value=31 Score=24.61 Aligned_cols=30 Identities=23% Similarity=0.369 Sum_probs=22.5
Q ss_pred EcCCC--CcC-hHHHHHHHhCCCCHHHHHHHHH
Q 046127 132 ITGTD--EHG-EKIAAAAADGGSSPSEHCDVVS 161 (345)
Q Consensus 132 v~G~D--~~G-~~I~~~A~~~g~~p~~~~~~~~ 161 (345)
-.|+| ++| .++..++++.|++++++.++..
T Consensus 21 ~~gIDfCCgG~~~L~eA~~~~~ld~~~vl~~L~ 53 (56)
T PF04405_consen 21 KYGIDFCCGGNRSLEEACEEKGLDPEEVLEELN 53 (56)
T ss_pred HcCCcccCCCCchHHHHHHHcCCCHHHHHHHHH
Confidence 34555 456 6888999999999998876654
No 186
>TIGR02370 pyl_corrinoid methyltransferase cognate corrinoid proteins, Methanosarcina family. This model describes a subfamily of the B12 binding domain (pfam02607, pfam02310) proteins. Members of the seed alignment include corrinoid proteins specific to four different, mutally non-homologous enzymes of the genus Methanosarcina. Three of the four cognate enzymes (trimethylamine, dimethylamine, and monomethylamine methyltransferases) all have the unusual, ribosomally incorporated amino acid pyrrolysine at the active site. All act in systems in which a methyl group is transferred to the corrinoid protein to create methylcobalamin, from which the methyl group is later transferred elsewhere.
Probab=33.45 E-value=1.5e+02 Score=26.49 Aligned_cols=39 Identities=23% Similarity=0.220 Sum_probs=28.0
Q ss_pred CCCCEEEEccCCCCCCcCchhHHHHHHHHHHHHHHHHHcCCeEEEEcCCC
Q 046127 87 PADPFVLTTPLYYVNAPPHMGSAYTTIAADAIARFQRLLGKKVIFITGTD 136 (345)
Q Consensus 87 ~~~~~~I~~~~PypnG~LHIGHar~~i~~DvlaR~lr~~G~~V~~v~G~D 136 (345)
...++++.+++ |..|= +-..+++.+++..|++|.+. |.|
T Consensus 83 ~~~~vv~~t~~----gd~H~------lG~~~v~~~l~~~G~~vi~L-G~~ 121 (197)
T TIGR02370 83 VLGKVVCGVAE----GDVHD------IGKNIVVTMLRANGFDVIDL-GRD 121 (197)
T ss_pred CCCeEEEEeCC----CchhH------HHHHHHHHHHHhCCcEEEEC-CCC
Confidence 34667666544 88884 45677788889999999976 544
No 187
>PF12773 DZR: Double zinc ribbon
Probab=33.13 E-value=25 Score=23.90 Aligned_cols=29 Identities=14% Similarity=0.359 Sum_probs=18.5
Q ss_pred CcccccCCCCccchhhhhcCCcCCCCCCCc
Q 046127 209 EGLYCVNCEEYKDEKELLENQCCPIHLKPC 238 (345)
Q Consensus 209 ~~~yc~~c~~~l~d~el~~~~~c~~~~~pv 238 (345)
..-||+.|++.|...+ .....|+.|+.++
T Consensus 11 ~~~fC~~CG~~l~~~~-~~~~~C~~Cg~~~ 39 (50)
T PF12773_consen 11 DAKFCPHCGTPLPPPD-QSKKICPNCGAEN 39 (50)
T ss_pred cccCChhhcCChhhcc-CCCCCCcCCcCCC
Confidence 4678888888887211 1225688888763
No 188
>PRK14890 putative Zn-ribbon RNA-binding protein; Provisional
Probab=33.05 E-value=27 Score=25.29 Aligned_cols=32 Identities=19% Similarity=0.222 Sum_probs=17.4
Q ss_pred cccccCCCCccchhhhhcCCcCCCCCCCceEe
Q 046127 210 GLYCVNCEEYKDEKELLENQCCPIHLKPCVAR 241 (345)
Q Consensus 210 ~~yc~~c~~~l~d~el~~~~~c~~~~~pve~r 241 (345)
...|.+|+..|.+.+-.-...|+.||+.+.+|
T Consensus 7 ~~~CtSCg~~i~~~~~~~~F~CPnCG~~~I~R 38 (59)
T PRK14890 7 PPKCTSCGIEIAPREKAVKFLCPNCGEVIIYR 38 (59)
T ss_pred CccccCCCCcccCCCccCEeeCCCCCCeeEee
Confidence 34577777766655421114466776654444
No 189
>PRK09875 putative hydrolase; Provisional
Probab=32.97 E-value=94 Score=29.80 Aligned_cols=91 Identities=13% Similarity=0.006 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHHcCCeEEEEcCCCCcChHHHHHHHhCCCCHHHHH-HHH----HHHHHHHHhhcCc--ccCccccCCChh
Q 046127 113 IAADAIARFQRLLGKKVIFITGTDEHGEKIAAAAADGGSSPSEHC-DVV----SQAYKTLWKDLDI--AYDKFIRTTEPK 185 (345)
Q Consensus 113 i~~DvlaR~lr~~G~~V~~v~G~D~~G~~I~~~A~~~g~~p~~~~-~~~----~~~~~~~l~~lgI--~~D~f~~T~~~~ 185 (345)
-+..+.+|..+..|..|..=++....|..+...+++.|++|..++ .+. -......+.+.|+ .||.+.+....
T Consensus 139 kvl~Aaa~a~~~TG~pi~~Ht~~~~~g~e~l~il~e~Gvd~~rvvi~H~d~~~d~~~~~~l~~~G~~l~fD~~g~~~~~- 217 (292)
T PRK09875 139 KVFIAAALAHNQTGRPISTHTSFSTMGLEQLALLQAHGVDLSRVTVGHCDLKDNLDNILKMIDLGAYVQFDTIGKNSYY- 217 (292)
T ss_pred HHHHHHHHHHHHHCCcEEEcCCCccchHHHHHHHHHcCcCcceEEEeCCCCCCCHHHHHHHHHcCCEEEeccCCCcccC-
Confidence 455566666777777776555554466666666667777666443 111 1233334445664 35554432110
Q ss_pred hHHHHHHHHHHHHhCCCee
Q 046127 186 HEAIVKEFYSSVLANGDIY 204 (345)
Q Consensus 186 ~~~~v~~~~~~L~~kG~iy 204 (345)
-.+...+.+..|.+.|+.-
T Consensus 218 pd~~r~~~i~~L~~~Gy~d 236 (292)
T PRK09875 218 PDEKRIAMLHALRDRGLLN 236 (292)
T ss_pred CHHHHHHHHHHHHhcCCCC
Confidence 0113355666677766543
No 190
>COG1996 RPC10 DNA-directed RNA polymerase, subunit RPC10 (contains C4-type Zn-finger) [Transcription]
Probab=32.96 E-value=27 Score=24.40 Aligned_cols=35 Identities=11% Similarity=0.244 Sum_probs=24.7
Q ss_pred CcccccCCCCccchhhhhcCCcCCCCCCCceEeec
Q 046127 209 EGLYCVNCEEYKDEKELLENQCCPIHLKPCVARKE 243 (345)
Q Consensus 209 ~~~yc~~c~~~l~d~el~~~~~c~~~~~pve~r~~ 243 (345)
..|=|..|+.-+...+....-.|+.||..+.+.+.
T Consensus 5 ~~Y~C~~Cg~~~~~~~~~~~irCp~Cg~rIl~K~R 39 (49)
T COG1996 5 MEYKCARCGREVELDQETRGIRCPYCGSRILVKER 39 (49)
T ss_pred EEEEhhhcCCeeehhhccCceeCCCCCcEEEEecc
Confidence 45669999998854444445679999987665543
No 191
>COG0143 MetG Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=32.86 E-value=17 Score=38.07 Aligned_cols=16 Identities=38% Similarity=0.619 Sum_probs=12.4
Q ss_pred CcccccCCCCccchhh
Q 046127 209 EGLYCVNCEEYKDEKE 224 (345)
Q Consensus 209 ~~~yc~~c~~~l~d~e 224 (345)
.+-.|.+|+..+++.+
T Consensus 154 rGD~Ce~Cg~~~~P~~ 169 (558)
T COG0143 154 RGDQCENCGRTLDPTE 169 (558)
T ss_pred CcchhhhccCcCCchh
Confidence 4667999999998744
No 192
>PF12674 Zn_ribbon_2: Putative zinc ribbon domain
Probab=32.66 E-value=60 Score=24.97 Aligned_cols=71 Identities=10% Similarity=0.214 Sum_probs=48.0
Q ss_pred cccCCCCccchhhhhc--------CCcCCCCCCCceEeeccccccchhHhHHHHHHHHhcCCCcccChHHHHHHHHHHhc
Q 046127 212 YCVNCEEYKDEKELLE--------NQCCPIHLKPCVARKEDNYFFALSKYQKLLEDTLTENPDFVQPSFRLNEVQGWIKS 283 (345)
Q Consensus 212 yc~~c~~~l~d~el~~--------~~~c~~~~~pve~r~~~~~f~~l~~~~~~L~e~l~~~~~~~~P~~~~~~~~~wl~~ 283 (345)
+|-+|+..+++.+..+ ..+|.-|...=+... -+.++...+....++.+... +.|+..+..+.++|.
T Consensus 2 ~CQSCGMPl~~~~~~Gte~dGs~s~~YC~yCy~~G~Ft~----~~t~eemie~~~~~~~~~~~-~~~~~a~~~~~~~lp- 75 (81)
T PF12674_consen 2 FCQSCGMPLSKDEDFGTEADGSKSEDYCSYCYQNGEFTQ----DITMEEMIEFCVPFMDEFNG-MTPEEARKMMPRYLP- 75 (81)
T ss_pred cCCcCcCccCCccccccccCCCCchhHHHHHhcCCceee----cCCHHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHcc-
Confidence 7999999998877432 124655654423322 36788999999999987632 567777777777876
Q ss_pred CCCCc
Q 046127 284 GLRDF 288 (345)
Q Consensus 284 gL~D~ 288 (345)
.|+-|
T Consensus 76 ~LkRW 80 (81)
T PF12674_consen 76 TLKRW 80 (81)
T ss_pred CCccc
Confidence 47766
No 193
>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines. Several members are annotated as putative helicases.
Probab=32.55 E-value=28 Score=20.87 Aligned_cols=22 Identities=23% Similarity=0.412 Sum_probs=15.3
Q ss_pred cccCCCCccchhhhhcCCcCCCCCCC
Q 046127 212 YCVNCEEYKDEKELLENQCCPIHLKP 237 (345)
Q Consensus 212 yc~~c~~~l~d~el~~~~~c~~~~~p 237 (345)
-||.|+..++... ..|+.||..
T Consensus 2 ~CP~C~~~V~~~~----~~Cp~CG~~ 23 (26)
T PF10571_consen 2 TCPECGAEVPESA----KFCPHCGYD 23 (26)
T ss_pred cCCCCcCCchhhc----CcCCCCCCC
Confidence 3889998776442 458888853
No 194
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=32.39 E-value=1.2e+02 Score=26.14 Aligned_cols=82 Identities=16% Similarity=0.140 Sum_probs=50.8
Q ss_pred CCCCEEEEccCCCCCCcCchhHHHHHHHHHHHHHHHHHcCCeEEEEcCCCCcChHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 046127 87 PADPFVLTTPLYYVNAPPHMGSAYTTIAADAIARFQRLLGKKVIFITGTDEHGEKIAAAAADGGSSPSEHCDVVSQAYKT 166 (345)
Q Consensus 87 ~~~~~~I~~~~PypnG~LHIGHar~~i~~DvlaR~lr~~G~~V~~v~G~D~~G~~I~~~A~~~g~~p~~~~~~~~~~~~~ 166 (345)
.+.+++|..+ | ==||-+ -+.+++|.++-.|.+|.+..... +|+++++.- +.+
T Consensus 11 ~rprvlvak~-----G--lDgHd~---gakvia~~l~d~GfeVi~~g~~~---------------tp~e~v~aA---~~~ 62 (143)
T COG2185 11 ARPRVLVAKL-----G--LDGHDR---GAKVIARALADAGFEVINLGLFQ---------------TPEEAVRAA---VEE 62 (143)
T ss_pred CCceEEEecc-----C--cccccc---chHHHHHHHHhCCceEEecCCcC---------------CHHHHHHHH---Hhc
Confidence 4556665543 2 236665 45788899999999998765443 444444332 333
Q ss_pred HHhhcCcccCccccCCChhhHHHHHHHHHHHHhCCC
Q 046127 167 LWKDLDIAYDKFIRTTEPKHEAIVKEFYSSVLANGD 202 (345)
Q Consensus 167 ~l~~lgI~~D~f~~T~~~~~~~~v~~~~~~L~~kG~ 202 (345)
+-.-++|+ ..+-.|...+..+.+.|.++|.
T Consensus 63 dv~vIgvS------sl~g~h~~l~~~lve~lre~G~ 92 (143)
T COG2185 63 DVDVIGVS------SLDGGHLTLVPGLVEALREAGV 92 (143)
T ss_pred CCCEEEEE------eccchHHHHHHHHHHHHHHhCC
Confidence 33333333 2355788889999999998875
No 195
>KOG2845 consensus Activating signal cointegrator 1 [Transcription]
Probab=32.31 E-value=12 Score=38.16 Aligned_cols=49 Identities=18% Similarity=0.206 Sum_probs=37.9
Q ss_pred cccCCCCccchhhhhcCCcCCCCCCCceEeeccccccchhH-------------------hHHHHHHHHh
Q 046127 212 YCVNCEEYKDEKELLENQCCPIHLKPCVARKEDNYFFALSK-------------------YQKLLEDTLT 262 (345)
Q Consensus 212 yc~~c~~~l~d~el~~~~~c~~~~~pve~r~~~~~f~~l~~-------------------~~~~L~e~l~ 262 (345)
=|..|++.+-+.|=. |-|..||.||..+.+..-+.+..+ ++++|+++-.
T Consensus 172 NCL~CGkIVCeQEGs--GPC~fCg~~V~t~eeq~~l~~~~n~~~l~G~~~iss~~~~A~~~k~klLe~d~ 239 (505)
T KOG2845|consen 172 NCLGCGKIVCEQEGS--GPCGFCGTPVCTREEQGILNRELNQKLLKGKVSISSALEKAYVHKDKLLEYDR 239 (505)
T ss_pred cccccceeEEEecCc--ccccccCCeeechhHHHHHHHHhhhhhccCccccchhhhhHHHHHhhhccccc
Confidence 599999987755544 569999999998888877766666 7788877754
No 196
>PRK03094 hypothetical protein; Provisional
Probab=31.82 E-value=63 Score=24.95 Aligned_cols=46 Identities=24% Similarity=0.375 Sum_probs=28.4
Q ss_pred HHHHHHHcCCeEEEE--------------cCCCCcChHHHHHH------HhCCCCHHHHHHHHHHH
Q 046127 118 IARFQRLLGKKVIFI--------------TGTDEHGEKIAAAA------ADGGSSPSEHCDVVSQA 163 (345)
Q Consensus 118 laR~lr~~G~~V~~v--------------~G~D~~G~~I~~~A------~~~g~~p~~~~~~~~~~ 163 (345)
+..+|+.+||.|.-+ +|-|..=+-|+..+ ...|++++++++...+.
T Consensus 13 i~~~L~~~GYeVv~l~~~~~~~~~Da~VitG~d~n~mgi~d~~t~~pVI~A~G~TaeEI~~~ve~r 78 (80)
T PRK03094 13 VQQALKQKGYEVVQLRSEQDAQGCDCCVVTGQDSNVMGIADTSTKGSVITASGLTADEICQQVESR 78 (80)
T ss_pred HHHHHHHCCCEEEecCcccccCCcCEEEEeCCCcceecccccccCCcEEEcCCCCHHHHHHHHHHh
Confidence 678999999999643 23222111222222 24689999998877554
No 197
>PRK00564 hypA hydrogenase nickel incorporation protein; Provisional
Probab=31.41 E-value=28 Score=28.61 Aligned_cols=31 Identities=16% Similarity=0.240 Sum_probs=21.4
Q ss_pred cccCcccccCCCCccchhhhhcCCcCCCCCCC
Q 046127 206 ADYEGLYCVNCEEYKDEKELLENQCCPIHLKP 237 (345)
Q Consensus 206 ~~~~~~yc~~c~~~l~d~el~~~~~c~~~~~p 237 (345)
......+|..|+...+..+.. ...||.||.+
T Consensus 67 ~vp~~~~C~~Cg~~~~~~~~~-~~~CP~Cgs~ 97 (117)
T PRK00564 67 DEKVELECKDCSHVFKPNALD-YGVCEKCHSK 97 (117)
T ss_pred ecCCEEEhhhCCCccccCCcc-CCcCcCCCCC
Confidence 345789999999765544332 2459999976
No 198
>PRK12380 hydrogenase nickel incorporation protein HybF; Provisional
Probab=31.37 E-value=27 Score=28.56 Aligned_cols=35 Identities=11% Similarity=0.203 Sum_probs=22.9
Q ss_pred cccCcccccCCCCccchhhhhcCCcCCCCCCC-ceEee
Q 046127 206 ADYEGLYCVNCEEYKDEKELLENQCCPIHLKP-CVARK 242 (345)
Q Consensus 206 ~~~~~~yc~~c~~~l~d~el~~~~~c~~~~~p-ve~r~ 242 (345)
.-....+|..|+......+.. ..||.||.+ +++..
T Consensus 66 ~vp~~~~C~~Cg~~~~~~~~~--~~CP~Cgs~~~~i~~ 101 (113)
T PRK12380 66 YKPAQAWCWDCSQVVEIHQHD--AQCPHCHGERLRVDT 101 (113)
T ss_pred eeCcEEEcccCCCEEecCCcC--ccCcCCCCCCcEEcc
Confidence 345789999999655544332 459999965 44433
No 199
>TIGR00100 hypA hydrogenase nickel insertion protein HypA. In Hpylori, hypA mutant abolished hydrogenase activity and decrease in urease activity. Nickel supplementation in media restored urease activity and partial hydrogenase activity. HypA probably involved in inserting Ni in enzymes.
Probab=31.31 E-value=27 Score=28.62 Aligned_cols=30 Identities=20% Similarity=0.222 Sum_probs=21.6
Q ss_pred cccCcccccCCCCccchhhhhcCCcCCCCCCC
Q 046127 206 ADYEGLYCVNCEEYKDEKELLENQCCPIHLKP 237 (345)
Q Consensus 206 ~~~~~~yc~~c~~~l~d~el~~~~~c~~~~~p 237 (345)
......+|..|+...+..+.. ..||.||.+
T Consensus 66 ~~p~~~~C~~Cg~~~~~~~~~--~~CP~Cgs~ 95 (115)
T TIGR00100 66 DEPVECECEDCSEEVSPEIDL--YRCPKCHGI 95 (115)
T ss_pred eeCcEEEcccCCCEEecCCcC--ccCcCCcCC
Confidence 335688999999776654432 469999975
No 200
>TIGR01610 phage_O_Nterm phage replication protein O, N-terminal domain. This model represents the N-terminal region of the phage lambda replication protein O and homologous regions of other phage proteins.
Probab=30.87 E-value=61 Score=25.38 Aligned_cols=30 Identities=20% Similarity=0.250 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHhCCCeeecccCcccccCC
Q 046127 187 EAIVKEFYSSVLANGDIYKADYEGLYCVNC 216 (345)
Q Consensus 187 ~~~v~~~~~~L~~kG~iy~~~~~~~yc~~c 216 (345)
...|..++.+|.++|+|.+..+...+|++-
T Consensus 61 r~tVsr~L~~Le~~GlI~r~~~~~~~~~n~ 90 (95)
T TIGR01610 61 RTHVSDAIKSLARRRIIFRQGMMGIVGVNT 90 (95)
T ss_pred HHHHHHHHHHHHHCCCeeeecCCceeecCC
Confidence 457889999999999999988888888764
No 201
>cd00350 rubredoxin_like Rubredoxin_like; nonheme iron binding domain containing a [Fe(SCys)4] center. The family includes rubredoxins, a small electron transfer protein, and a slightly smaller modular rubredoxin domain present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=30.61 E-value=36 Score=21.36 Aligned_cols=25 Identities=28% Similarity=0.539 Sum_probs=14.9
Q ss_pred ccccCCCCccchhhhhcCCcCCCCCCC
Q 046127 211 LYCVNCEEYKDEKELLENQCCPIHLKP 237 (345)
Q Consensus 211 ~yc~~c~~~l~d~el~~~~~c~~~~~p 237 (345)
|-|..|+-...+.+ .+..|+.||.+
T Consensus 2 ~~C~~CGy~y~~~~--~~~~CP~Cg~~ 26 (33)
T cd00350 2 YVCPVCGYIYDGEE--APWVCPVCGAP 26 (33)
T ss_pred EECCCCCCEECCCc--CCCcCcCCCCc
Confidence 45777775544333 34567887765
No 202
>TIGR00515 accD acetyl-CoA carboxylase, carboxyl transferase, beta subunit. The enzyme acetyl-CoA carboxylase contains a biotin carboxyl carrier protein or domain, a biotin carboxylase, and a carboxyl transferase. This model represents the beta chain of the carboxyl transferase for cases in which the architecture of the protein is as in E. coli, in which the carboxyltransferase portion consists of two non-identical subnits, alpha and beta.
Probab=30.53 E-value=29 Score=33.21 Aligned_cols=25 Identities=32% Similarity=0.546 Sum_probs=21.1
Q ss_pred cccCCCCccchhhhhcC-CcCCCCCC
Q 046127 212 YCVNCEEYKDEKELLEN-QCCPIHLK 236 (345)
Q Consensus 212 yc~~c~~~l~d~el~~~-~~c~~~~~ 236 (345)
-|++|++.+...++..+ ..|+.|+.
T Consensus 28 ~c~~c~~~~~~~~l~~~~~vc~~c~~ 53 (285)
T TIGR00515 28 KCPKCGQVLYTKELERNLEVCPKCDH 53 (285)
T ss_pred ECCCCcchhhHHHHHhhCCCCCCCCC
Confidence 39999999999998754 68999984
No 203
>PRK13264 3-hydroxyanthranilate 3,4-dioxygenase; Provisional
Probab=30.11 E-value=19 Score=32.00 Aligned_cols=18 Identities=28% Similarity=0.418 Sum_probs=14.1
Q ss_pred cccCcccccCCCCccchh
Q 046127 206 ADYEGLYCVNCEEYKDEK 223 (345)
Q Consensus 206 ~~~~~~yc~~c~~~l~d~ 223 (345)
.++-.|||.+|+..+-+.
T Consensus 116 ~d~~~wyc~~c~~~~~e~ 133 (177)
T PRK13264 116 LDGFQWYCDECNHKVHEV 133 (177)
T ss_pred ccceEEECCCCCCeEEEE
Confidence 456689999999887653
No 204
>PLN02945 nicotinamide-nucleotide adenylyltransferase/nicotinate-nucleotide adenylyltransferase
Probab=29.95 E-value=1.2e+02 Score=27.83 Aligned_cols=41 Identities=12% Similarity=0.071 Sum_probs=25.0
Q ss_pred CCCCCCCEEEEccCCCCCCcCchhHHHHHHHHHHHHHHHHHcCCeEE
Q 046127 84 GTEPADPFVLTTPLYYVNAPPHMGSAYTTIAADAIARFQRLLGKKVI 130 (345)
Q Consensus 84 ~~~~~~~~~I~~~~PypnG~LHIGHar~~i~~DvlaR~lr~~G~~V~ 130 (345)
.+++...+.|.+++. .|+|.||+. ++......+.+.+..+.
T Consensus 17 ~~~~~~~v~i~GGSF---dP~H~gHl~---ia~~a~~~l~~d~~~~v 57 (236)
T PLN02945 17 TGPRTRVVLVATGSF---NPPTYMHLR---MFELARDALMSEGYHVL 57 (236)
T ss_pred ccCCceEEEEEcCCC---CCCcHHHHH---HHHHHHHHHhhcCcEEE
Confidence 344455566666554 689999976 44444455556666554
No 205
>PF01747 ATP-sulfurylase: ATP-sulfurylase; InterPro: IPR002650 This entry consists of sulphate adenylyltransferase or ATP-sulfurylase (2.7.7.4 from EC) some of which are part of a bifunctional polypeptide chain associated with adenosyl phosphosulphate (APS) kinase, IPR002891 from INTERPRO. Both enzymes are required for PAPS (phosphoadenosine-phosphosulphate) synthesis from inorganic sulphate []. ATP sulfurylase catalyses the synthesis of adenosine-phosphosulphate APS from ATP and inorganic sulphate [].; GO: 0004781 sulfate adenylyltransferase (ATP) activity, 0000103 sulfate assimilation; PDB: 3CR8_B 1M8P_C 1I2D_B 1JHD_A 1V47_B 1X6V_B 1XNJ_A 1XJQ_B 2QJF_A 2GKS_B ....
Probab=29.78 E-value=1.1e+02 Score=28.11 Aligned_cols=36 Identities=22% Similarity=0.301 Sum_probs=25.6
Q ss_pred HHHHHHHH-HHhCCCeeecccCcccccCCCCccchhh
Q 046127 189 IVKEFYSS-VLANGDIYKADYEGLYCVNCEEYKDEKE 224 (345)
Q Consensus 189 ~v~~~~~~-L~~kG~iy~~~~~~~yc~~c~~~l~d~e 224 (345)
..+++|.+ ..+-|.--..-...+||+.|+++.+..+
T Consensus 136 ~a~~i~~~~~~el~I~~v~~~~~~Yc~~~~~~~~~~~ 172 (215)
T PF01747_consen 136 EAQEIFDEYAGELGIEPVPFPEMVYCPKCGQYVSAKT 172 (215)
T ss_dssp HHHHHHHHHHHHCTSEEEE---EEEETTTTEEEECGG
T ss_pred HHHHHHHcCcccCCceEEecceEEEEcCCCeEeeccc
Confidence 46777777 5567777778889999999999887543
No 206
>PF08784 RPA_C: Replication protein A C terminal; InterPro: IPR014892 This protein corresponds to the C-terminal of the single stranded DNA binding protein RPA (replication protein A). RPA is involved in many DNA metabolic pathways including DNA replication, DNA repair, recombination, cell cycle and DNA damage checkpoints. ; PDB: 1QUQ_C 2PQA_C 3KDF_B 2Z6K_B 2PI2_B 1L1O_E 1DPU_A 1Z1D_A.
Probab=29.70 E-value=44 Score=26.33 Aligned_cols=50 Identities=18% Similarity=0.152 Sum_probs=29.7
Q ss_pred HHHHHHHHHHH-HHhhcCcccCccccCCChhhHHHHHHHHHHHHhCCCeeec
Q 046127 156 HCDVVSQAYKT-LWKDLDIAYDKFIRTTEPKHEAIVKEFYSSVLANGDIYKA 206 (345)
Q Consensus 156 ~~~~~~~~~~~-~l~~lgI~~D~f~~T~~~~~~~~v~~~~~~L~~kG~iy~~ 206 (345)
+.+++.+-+++ .-..-||.++...... ..-...|+..+..|.+.|+||.-
T Consensus 48 ~~~~Vl~~i~~~~~~~~Gv~v~~I~~~l-~~~~~~v~~al~~L~~eG~IYsT 98 (102)
T PF08784_consen 48 LQDKVLNFIKQQPNSEEGVHVDEIAQQL-GMSENEVRKALDFLSNEGHIYST 98 (102)
T ss_dssp HHHHHHHHHHC----TTTEEHHHHHHHS-TS-HHHHHHHHHHHHHTTSEEES
T ss_pred HHHHHHHHHHhcCCCCCcccHHHHHHHh-CcCHHHHHHHHHHHHhCCeEecc
Confidence 34444444444 4445566666443322 23366889999999999999953
No 207
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=29.45 E-value=1.2e+02 Score=28.38 Aligned_cols=30 Identities=20% Similarity=0.171 Sum_probs=22.5
Q ss_pred cCchhHH-HHHHHHHHHHHHHHHcCCeEEEEcCCC
Q 046127 103 PPHMGSA-YTTIAADAIARFQRLLGKKVIFITGTD 136 (345)
Q Consensus 103 ~LHIGHa-r~~i~~DvlaR~lr~~G~~V~~v~G~D 136 (345)
..=+||+ |...+++.+ +.+|++|.|++--+
T Consensus 11 ~iG~GHv~Rcl~LA~~l----~~~g~~v~f~~~~~ 41 (279)
T TIGR03590 11 EIGLGHVMRCLTLARAL----HAQGAEVAFACKPL 41 (279)
T ss_pred cccccHHHHHHHHHHHH----HHCCCEEEEEeCCC
Confidence 3568997 677776665 45799999997664
No 208
>COG0667 Tas Predicted oxidoreductases (related to aryl-alcohol dehydrogenases) [Energy production and conversion]
Probab=29.15 E-value=1.8e+02 Score=28.11 Aligned_cols=101 Identities=19% Similarity=0.164 Sum_probs=58.0
Q ss_pred CCEEEEccCCCCCCcCchhHHHHHHHHHHHHHHHHHcCCeEEEE--cCCCCcC-hHHHHHHHhCCCCHHHHHHHHHHHHH
Q 046127 89 DPFVLTTPLYYVNAPPHMGSAYTTIAADAIARFQRLLGKKVIFI--TGTDEHG-EKIAAAAADGGSSPSEHCDVVSQAYK 165 (345)
Q Consensus 89 ~~~~I~~~~PypnG~LHIGHar~~i~~DvlaR~lr~~G~~V~~v--~G~D~~G-~~I~~~A~~~g~~p~~~~~~~~~~~~ 165 (345)
..-++.|+.-|-+| ...-++++++..+-+ + .+|... .|.+-.. .+-. ..+.++ +.+...+.
T Consensus 46 Gin~~DTA~~Yg~g------~sE~ilG~~l~~~~~-R-d~vvIaTK~g~~~~~~~~~~----~~~~s~----~~i~~~v~ 109 (316)
T COG0667 46 GINFFDTADVYGDG------RSEEILGEALKERGR-R-DKVVIATKVGYRPGDPGPNG----VFGLSR----DHIRRAVE 109 (316)
T ss_pred CCCEEECccccCCC------chHHHHHHHHhccCC-C-CeEEEEEeeccCCCCCCCCc----cCCCCH----HHHHHHHH
Confidence 34578888888666 446677777776543 2 334332 2332210 0000 223333 34677888
Q ss_pred HHHhhcCcc-cCccc-cCCCh-hhHHHHHHHHHHHHhCCCeee
Q 046127 166 TLWKDLDIA-YDKFI-RTTEP-KHEAIVKEFYSSVLANGDIYK 205 (345)
Q Consensus 166 ~~l~~lgI~-~D~f~-~T~~~-~~~~~v~~~~~~L~~kG~iy~ 205 (345)
..|++||++ .|.|+ +-.++ .-...+-..+..|.+.|.|.-
T Consensus 110 ~SL~RLgtd~IDl~~iH~~d~~~p~~e~~~aL~~l~~~G~ir~ 152 (316)
T COG0667 110 ASLKRLGTDYIDLYQLHRPDPETPIEETLEALDELVREGKIRY 152 (316)
T ss_pred HHHHHhCCCceeEEEeCCCCCCCCHHHHHHHHHHHHHcCCeeE
Confidence 899999997 47443 22222 123344778999999999753
No 209
>COG0846 SIR2 NAD-dependent protein deacetylases, SIR2 family [Transcription]
Probab=28.67 E-value=35 Score=32.04 Aligned_cols=41 Identities=20% Similarity=0.436 Sum_probs=28.4
Q ss_pred cccCcccccCCCCccchhhhh------cCCcCCCCCCCceEeeccccc
Q 046127 206 ADYEGLYCVNCEEYKDEKELL------ENQCCPIHLKPCVARKEDNYF 247 (345)
Q Consensus 206 ~~~~~~yc~~c~~~l~d~el~------~~~~c~~~~~pve~r~~~~~f 247 (345)
++...++|..|+......++. ..+.|+.|+.+ ++|+---||
T Consensus 118 Gsl~~~~C~~C~~~~~~~~~~~~~~~~~~p~C~~Cg~~-~lrP~VV~f 164 (250)
T COG0846 118 GSLKRVRCSKCGNQYYDEDVIKFIEDGLIPRCPKCGGP-VLRPDVVWF 164 (250)
T ss_pred cceeeeEeCCCcCccchhhhhhhcccCCCCcCccCCCc-cccCCEEEe
Confidence 334578899998666533322 13679999997 677777787
No 210
>CHL00174 accD acetyl-CoA carboxylase beta subunit; Reviewed
Probab=28.66 E-value=32 Score=33.11 Aligned_cols=24 Identities=25% Similarity=0.331 Sum_probs=20.9
Q ss_pred ccCCCCccchhhhhcC-CcCCCCCC
Q 046127 213 CVNCEEYKDEKELLEN-QCCPIHLK 236 (345)
Q Consensus 213 c~~c~~~l~d~el~~~-~~c~~~~~ 236 (345)
|++|++.+..+++..+ ..|+.|+.
T Consensus 41 c~~C~~~~~~~~l~~~~~vcp~c~~ 65 (296)
T CHL00174 41 CENCYGLNYKKFLKSKMNICEQCGY 65 (296)
T ss_pred CCCccchhhHHHHHHcCCCCCCCCC
Confidence 9999999999999764 68999985
No 211
>COG3078 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=28.19 E-value=56 Score=28.18 Aligned_cols=29 Identities=17% Similarity=0.282 Sum_probs=25.2
Q ss_pred CCCCHHHHHHHHHHHHHHHHhhcCcccCc
Q 046127 149 GGSSPSEHCDVVSQAYKTLWKDLDIAYDK 177 (345)
Q Consensus 149 ~g~~p~~~~~~~~~~~~~~l~~lgI~~D~ 177 (345)
.+..-+.|++..++.|-+.|+.|||++|.
T Consensus 123 Ls~edQ~~VD~~LDRI~~LMe~LGl~~dd 151 (169)
T COG3078 123 LSAEDQQWVDAKLDRIDELMEKLGLSYDD 151 (169)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHhCCccCC
Confidence 34556789999999999999999999973
No 212
>PRK03681 hypA hydrogenase nickel incorporation protein; Validated
Probab=28.06 E-value=33 Score=28.05 Aligned_cols=31 Identities=16% Similarity=0.341 Sum_probs=21.0
Q ss_pred cccCcccccCCCCccchhhhhcCCcCCCCCCC
Q 046127 206 ADYEGLYCVNCEEYKDEKELLENQCCPIHLKP 237 (345)
Q Consensus 206 ~~~~~~yc~~c~~~l~d~el~~~~~c~~~~~p 237 (345)
......+|..|+...+..+.. ...||.||.+
T Consensus 66 ~~p~~~~C~~Cg~~~~~~~~~-~~~CP~Cgs~ 96 (114)
T PRK03681 66 EQEAECWCETCQQYVTLLTQR-VRRCPQCHGD 96 (114)
T ss_pred eeCcEEEcccCCCeeecCCcc-CCcCcCcCCC
Confidence 335789999999866543221 1349999975
No 213
>PRK07111 anaerobic ribonucleoside triphosphate reductase; Provisional
Probab=28.00 E-value=85 Score=34.18 Aligned_cols=56 Identities=14% Similarity=0.164 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHhCCCeee-cccCcccccCCCCccchhhhhcCCcCCCCCC-Cce-Eeeccccc
Q 046127 187 EAIVKEFYSSVLANGDIYK-ADYEGLYCVNCEEYKDEKELLENQCCPIHLK-PCV-ARKEDNYF 247 (345)
Q Consensus 187 ~~~v~~~~~~L~~kG~iy~-~~~~~~yc~~c~~~l~d~el~~~~~c~~~~~-pve-~r~~~~~f 247 (345)
.+.+.++++.+.+.|.-|- -..+.-.|+.|+ +... .. ..||.||. +++ ++..--|+
T Consensus 656 ~eal~~lvk~~~~~~i~Y~sin~~~~~C~~CG-~~~~--~~--~~CP~CG~~~~~~~~Ri~GYl 714 (735)
T PRK07111 656 VEAFEIIVKAMKNTNIGYGSINHPVDRCPVCG-YLGV--IE--DKCPKCGSTNIQRIRRITGYL 714 (735)
T ss_pred HHHHHHHHHHHHhCCCceEEeCCCCeecCCCC-CCCC--cC--ccCcCCCCccceeeehhhhhc
Confidence 3566666666666566663 345677799999 4332 11 57999995 332 33444444
No 214
>cd00598 GH18_chitinase-like The GH18 (glycosyl hydrolase, family 18) type II chitinases hydrolyze chitin, an abundant polymer of beta-1,4-linked N-acetylglucosamine (GlcNAc) which is a major component of the cell wall of fungi and the exoskeleton of arthropods. Chitinases have been identified in viruses, bacteria, fungi, protozoan parasites, insects, and plants. The structure of the GH18 domain is an eight-stranded beta/alpha barrel with a pronounced active-site cleft at the C-terminal end of the beta-barrel. The GH18 family includes chitotriosidase, chitobiase, hevamine, zymocin-alpha, narbonin, SI-CLP (stabilin-1 interacting chitinase-like protein), IDGF (imaginal disc growth factor), CFLE (cortical fragment-lytic enzyme) spore hydrolase, the type III and type V plant chitinases, the endo-beta-N-acetylglucosaminidases, and the chitolectins. The GH85 (glycosyl hydrolase, family 85) ENGases (endo-beta-N-acetylglucosaminidases) are closely related to the GH18 chitinases and are inclu
Probab=27.88 E-value=3.6e+02 Score=23.37 Aligned_cols=82 Identities=16% Similarity=0.184 Sum_probs=37.2
Q ss_pred HHHHHHHHHH-cCCeEEEEcCCCCcChHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhc---CcccCccc-cCCC----hh
Q 046127 115 ADAIARFQRL-LGKKVIFITGTDEHGEKIAAAAADGGSSPSEHCDVVSQAYKTLWKDL---DIAYDKFI-RTTE----PK 185 (345)
Q Consensus 115 ~DvlaR~lr~-~G~~V~~v~G~D~~G~~I~~~A~~~g~~p~~~~~~~~~~~~~~l~~l---gI~~D~f~-~T~~----~~ 185 (345)
...+.+..+. .|.+|....|....+... ... .++ +..+.+.+.+.+.++.. ||++|... ...+ ..
T Consensus 52 ~~~i~~l~~~~~g~kv~~sigg~~~~~~~--~~~---~~~-~~~~~f~~~~~~~v~~~~~DGidiD~E~~~~~~~~~~~~ 125 (210)
T cd00598 52 KGALEELASKKPGLKVLISIGGWTDSSPF--TLA---SDP-ASRAAFANSLVSFLKTYGFDGVDIDWEYPGAADNSDREN 125 (210)
T ss_pred HHHHHHHHHhCCCCEEEEEEcCCCCCCCc--hhh---cCH-HHHHHHHHHHHHHHHHcCCCceEEeeeCCCCcCccHHHH
Confidence 3444444433 488998866654433221 000 111 12233444444444445 55666333 2222 34
Q ss_pred hHHHHHHHHHHHHhCCC
Q 046127 186 HEAIVKEFYSSVLANGD 202 (345)
Q Consensus 186 ~~~~v~~~~~~L~~kG~ 202 (345)
+...++++-.+|.++|+
T Consensus 126 ~~~ll~~lr~~l~~~~~ 142 (210)
T cd00598 126 FITLLRELRSALGAANY 142 (210)
T ss_pred HHHHHHHHHHHhcccCc
Confidence 55555555555544444
No 215
>PF02150 RNA_POL_M_15KD: RNA polymerases M/15 Kd subunit; InterPro: IPR001529 DNA-directed RNA polymerases 2.7.7.6 from EC (also known as DNA-dependent RNA polymerases) are responsible for the polymerisation of ribonucleotides into a sequence complementary to the template DNA. In eukaryotes, there are three different forms of DNA-directed RNA polymerases transcribing different sets of genes. Most RNA polymerases are multimeric enzymes and are composed of a variable number of subunits. The core RNA polymerase complex consists of five subunits (two alpha, one beta, one beta-prime and one omega) and is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. The core RNA polymerase complex forms a "crab claw"-like structure with an internal channel running along the full length []. The key functional sites of the enzyme, as defined by mutational and cross-linking analysis, are located on the inner wall of this channel. RNA synthesis follows after the attachment of RNA polymerase to a specific site, the promoter, on the template DNA strand. The RNA synthesis process continues until a termination sequence is reached. The RNA product, which is synthesised in the 5' to 3'direction, is known as the primary transcript. Eukaryotic nuclei contain three distinct types of RNA polymerases that differ in the RNA they synthesise: RNA polymerase I: located in the nucleoli, synthesises precursors of most ribosomal RNAs. RNA polymerase II: occurs in the nucleoplasm, synthesises mRNA precursors. RNA polymerase III: also occurs in the nucleoplasm, synthesises the precursors of 5S ribosomal RNA, the tRNAs, and a variety of other small nuclear and cytosolic RNAs. Eukaryotic cells are also known to contain separate mitochondrial and chloroplast RNA polymerases. Eukaryotic RNA polymerases, whose molecular masses vary in size from 500 to 700 kDa, contain two non-identical large (>100 kDa) subunits and an array of up to 12 different small (less than 50 kDa) subunits. In archaebacteria, there is generally a single form of RNA polymerase which also consist of an oligomeric assemblage of 10 to 13 polypeptides. It has recently been shown [], [] that small subunits of about 15 kDa, found in polymerase types I and II, are highly conserved. These proteins contain a probable zinc finger in their N-terminal region and a C-terminal zinc ribbon domain (see IPR001222 from INTERPRO).; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent; PDB: 3H0G_I 3M4O_I 3S14_I 2E2J_I 4A3J_I 3HOZ_I 1TWA_I 3S1Q_I 3S1N_I 1TWG_I ....
Probab=27.88 E-value=24 Score=22.61 Aligned_cols=26 Identities=23% Similarity=0.373 Sum_probs=16.7
Q ss_pred ccccCCCCccchhhhhcCC-cCCCCCC
Q 046127 211 LYCVNCEEYKDEKELLENQ-CCPIHLK 236 (345)
Q Consensus 211 ~yc~~c~~~l~d~el~~~~-~c~~~~~ 236 (345)
-||+.|+..|...+-.+.. .|..|+-
T Consensus 2 ~FCp~C~nlL~p~~~~~~~~~C~~C~Y 28 (35)
T PF02150_consen 2 RFCPECGNLLYPKEDKEKRVACRTCGY 28 (35)
T ss_dssp -BETTTTSBEEEEEETTTTEEESSSS-
T ss_pred eeCCCCCccceEcCCCccCcCCCCCCC
Confidence 4899999988765543321 4888874
No 216
>PF02698 DUF218: DUF218 domain; InterPro: IPR003848 This domain of unknown function is found in several uncharacterised proteins.; PDB: 3CA8_A.
Probab=27.63 E-value=3.2e+02 Score=22.63 Aligned_cols=103 Identities=18% Similarity=0.136 Sum_probs=42.4
Q ss_pred EEEEccCCCCCCcCchhHHHHHHHHHHHHHHHHHcCCeEEEEcCCCCcC------hHHHHHHHhCCCCHHH--------H
Q 046127 91 FVLTTPLYYVNAPPHMGSAYTTIAADAIARFQRLLGKKVIFITGTDEHG------EKIAAAAADGGSSPSE--------H 156 (345)
Q Consensus 91 ~~I~~~~PypnG~LHIGHar~~i~~DvlaR~lr~~G~~V~~v~G~D~~G------~~I~~~A~~~g~~p~~--------~ 156 (345)
++|..+..+..|.++-++.... |.-++..+..-...+.++|-..++ ..+...+.+.|++... -
T Consensus 5 ivVlG~~~~~~~~~~~~~~~R~---~~a~~L~~~g~~~~il~SGg~~~~~~~~ea~~~~~~l~~~gvp~~~I~~e~~s~~ 81 (155)
T PF02698_consen 5 IVVLGSALDPDGQLSPESRERL---DEAARLYKAGYAPRILFSGGYGHGDGRSEAEAMRDYLIELGVPEERIILEPKSTN 81 (155)
T ss_dssp EEEES-----------S-HHHH---HHHHHHHH-HHT--EEEE--SSTTHTS-HHHHHHHHHHHT---GGGEEEE----S
T ss_pred EEECCcCccccccccHhHHHHH---HHHHHHHhcCCCCeEEECCCCCCCCCCCHHHHHHHHHHhcccchheeEccCCCCC
Confidence 5566557777777777765422 555565554334456667744444 2233444455655332 1
Q ss_pred HHHHHHHHHHHHhhcCcccCccccCCChhhHHHHHHHHHHHH
Q 046127 157 CDVVSQAYKTLWKDLDIAYDKFIRTTEPKHEAIVKEFYSSVL 198 (345)
Q Consensus 157 ~~~~~~~~~~~l~~lgI~~D~f~~T~~~~~~~~v~~~~~~L~ 198 (345)
.-++....++.++..|+ ....--+++.|...+..+|+++.
T Consensus 82 T~ena~~~~~~~~~~~~--~~iilVT~~~H~~Ra~~~~~~~~ 121 (155)
T PF02698_consen 82 TYENARFSKRLLKERGW--QSIILVTSPYHMRRARMIFRKVG 121 (155)
T ss_dssp HHHHHHHHHHHHHT-SS--S-EEEE--CCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhcC--CeEEEECCHHHHHHHHHHHHHhC
Confidence 23444555566666666 33333455677777777777765
No 217
>cd06545 GH18_3CO4_chitinase The Bacteroides thetaiotaomicron protein represented by pdb structure 3CO4 is an uncharacterized bacterial member of the family 18 glycosyl hydrolases with homologs found in Flavobacterium, Stigmatella, and Pseudomonas.
Probab=26.85 E-value=3.2e+02 Score=25.06 Aligned_cols=106 Identities=10% Similarity=0.067 Sum_probs=51.3
Q ss_pred CEEEEccCCCCCCcCchhHHHHHHHHHHHHHHHHHcCCeEEEEcCCCCcChHHHHHHHhCCCCHHHHHHHHHHHHHHHHh
Q 046127 90 PFVLTTPLYYVNAPPHMGSAYTTIAADAIARFQRLLGKKVIFITGTDEHGEKIAAAAADGGSSPSEHCDVVSQAYKTLWK 169 (345)
Q Consensus 90 ~~~I~~~~PypnG~LHIGHar~~i~~DvlaR~lr~~G~~V~~v~G~D~~G~~I~~~A~~~g~~p~~~~~~~~~~~~~~l~ 169 (345)
.+++....++++|.+++.+-.. -.+.+.+..+..|-+|....|....+.... +. .++. -.+.+.+.+.+.++
T Consensus 25 hv~~~f~~i~~~G~l~~~~~~~--~~~~~~~~~~~~~~kvl~sigg~~~~~~~~--~~---~~~~-~r~~fi~~lv~~~~ 96 (253)
T cd06545 25 HINLAFANPDANGTLNANPVRS--ELNSVVNAAHAHNVKILISLAGGSPPEFTA--AL---NDPA-KRKALVDKIINYVV 96 (253)
T ss_pred eEEEEEEEECCCCeEEecCcHH--HHHHHHHHHHhCCCEEEEEEcCCCCCcchh--hh---cCHH-HHHHHHHHHHHHHH
Confidence 3444445556677777653111 112233444667888887666544332111 11 1121 12223333333334
Q ss_pred hc---CcccCccccCC-ChhhHHHHHHHHHHHHhCCCe
Q 046127 170 DL---DIAYDKFIRTT-EPKHEAIVKEFYSSVLANGDI 203 (345)
Q Consensus 170 ~l---gI~~D~f~~T~-~~~~~~~v~~~~~~L~~kG~i 203 (345)
+. ||++|..+... ...+...++++-..|.+.|++
T Consensus 97 ~~~~DGIdiDwE~~~~~~~~~~~fv~~Lr~~l~~~~~~ 134 (253)
T cd06545 97 SYNLDGIDVDLEGPDVTFGDYLVFIRALYAALKKEGKL 134 (253)
T ss_pred HhCCCceeEEeeccCccHhHHHHHHHHHHHHHhhcCcE
Confidence 44 46666332222 245667777777777766654
No 218
>PF02662 FlpD: Methyl-viologen-reducing hydrogenase, delta subunit; InterPro: IPR003813 Methyl-viologen-reducing hydrogenase (MVH) is one of the enzymes involved in methanogenesis and coded in the mth-flp-mvh-mrt cluster of methane genes in Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) []. No specific functions have been assigned to the delta subunit.; GO: 0015948 methanogenesis, 0055114 oxidation-reduction process
Probab=26.81 E-value=1.6e+02 Score=24.37 Aligned_cols=67 Identities=21% Similarity=0.313 Sum_probs=43.4
Q ss_pred HcCCeEEEEcCC---CCcChHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhcCcccCcc----ccCC-ChhhHHHHHHHHH
Q 046127 124 LLGKKVIFITGT---DEHGEKIAAAAADGGSSPSEHCDVVSQAYKTLWKDLDIAYDKF----IRTT-EPKHEAIVKEFYS 195 (345)
Q Consensus 124 ~~G~~V~~v~G~---D~~G~~I~~~A~~~g~~p~~~~~~~~~~~~~~l~~lgI~~D~f----~~T~-~~~~~~~v~~~~~ 195 (345)
..|-+-.++.|= |+|-. .-...+.+-.+..++.|+.+||..+++ .... ...+.+.+.++.+
T Consensus 50 ~~GADGV~V~gC~~g~Ch~~-----------~Gn~~a~~Rv~~~k~~L~~~Gi~~eRv~~~~~~~~~~~~fa~~~~~f~~ 118 (124)
T PF02662_consen 50 EKGADGVLVAGCHPGDCHYR-----------EGNYRAEKRVERLKKLLEELGIEPERVRLYWISAPEGKRFAEIVNEFTE 118 (124)
T ss_pred HcCCCEEEEeCCCCCCCCcc-----------hhhHHHHHHHHHHHHHHHHcCCChhHeEEEEeCcccHHHHHHHHHHHHH
Confidence 357877777663 33321 123456667889999999999998832 2222 2456677777777
Q ss_pred HHHhCC
Q 046127 196 SVLANG 201 (345)
Q Consensus 196 ~L~~kG 201 (345)
++.+-|
T Consensus 119 ~i~~lG 124 (124)
T PF02662_consen 119 RIKELG 124 (124)
T ss_pred HHHHcC
Confidence 777654
No 219
>PRK05654 acetyl-CoA carboxylase subunit beta; Validated
Probab=26.19 E-value=38 Score=32.51 Aligned_cols=24 Identities=33% Similarity=0.581 Sum_probs=21.1
Q ss_pred ccCCCCccchhhhhcC-CcCCCCCC
Q 046127 213 CVNCEEYKDEKELLEN-QCCPIHLK 236 (345)
Q Consensus 213 c~~c~~~l~d~el~~~-~~c~~~~~ 236 (345)
|++|++.+...++..+ ..|+.|+.
T Consensus 30 c~~c~~~~~~~~l~~~~~vc~~c~~ 54 (292)
T PRK05654 30 CPSCGQVLYRKELEANLNVCPKCGH 54 (292)
T ss_pred CCCccchhhHHHHHhcCCCCCCCCC
Confidence 9999999999999765 58999985
No 220
>smart00834 CxxC_CXXC_SSSS Putative regulatory protein. CxxC_CXXC_SSSS represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria. The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.
Probab=25.79 E-value=49 Score=21.19 Aligned_cols=29 Identities=14% Similarity=0.164 Sum_probs=17.9
Q ss_pred cccccCCCCccchhhh---hcCCcCCCCCCCc
Q 046127 210 GLYCVNCEEYKDEKEL---LENQCCPIHLKPC 238 (345)
Q Consensus 210 ~~yc~~c~~~l~d~el---~~~~~c~~~~~pv 238 (345)
.+.|+.|+.......- .....|+.||.++
T Consensus 5 ~y~C~~Cg~~fe~~~~~~~~~~~~CP~Cg~~~ 36 (41)
T smart00834 5 EYRCEDCGHTFEVLQKISDDPLATCPECGGDV 36 (41)
T ss_pred EEEcCCCCCEEEEEEecCCCCCCCCCCCCCcc
Confidence 4579999985432111 2235699999854
No 221
>PF09845 DUF2072: Zn-ribbon containing protein (DUF2072); InterPro: IPR018645 This archaeal Zinc-ribbon containing proteins have no known function.
Probab=25.70 E-value=33 Score=28.93 Aligned_cols=27 Identities=15% Similarity=0.202 Sum_probs=18.6
Q ss_pred ccccCCCCccchhhhhcCCcCCCCCCC
Q 046127 211 LYCVNCEEYKDEKELLENQCCPIHLKP 237 (345)
Q Consensus 211 ~yc~~c~~~l~d~el~~~~~c~~~~~p 237 (345)
+-|.+|++.+.|....--..|+.||..
T Consensus 2 H~Ct~Cg~~f~dgs~eil~GCP~CGg~ 28 (131)
T PF09845_consen 2 HQCTKCGRVFEDGSKEILSGCPECGGN 28 (131)
T ss_pred cccCcCCCCcCCCcHHHHccCcccCCc
Confidence 359999999987542212459999853
No 222
>PRK12495 hypothetical protein; Provisional
Probab=25.17 E-value=79 Score=29.10 Aligned_cols=41 Identities=22% Similarity=0.360 Sum_probs=25.8
Q ss_pred HHHHHHHhCCCeeecccCcccccCCCCccchhhhhcCCcCCCCCCCc
Q 046127 192 EFYSSVLANGDIYKADYEGLYCVNCEEYKDEKELLENQCCPIHLKPC 238 (345)
Q Consensus 192 ~~~~~L~~kG~iy~~~~~~~yc~~c~~~l~d~el~~~~~c~~~~~pv 238 (345)
+.+..|+.+|. ...-.+|+.|+..|. .+.+.-+|+.|...+
T Consensus 28 ~~ma~lL~~ga----tmsa~hC~~CG~PIp--a~pG~~~Cp~CQ~~~ 68 (226)
T PRK12495 28 ERMSELLLQGA----TMTNAHCDECGDPIF--RHDGQEFCPTCQQPV 68 (226)
T ss_pred HHHHHHHHhhc----ccchhhcccccCccc--CCCCeeECCCCCCcc
Confidence 34444554443 334668999999888 344445688887554
No 223
>PF09297 zf-NADH-PPase: NADH pyrophosphatase zinc ribbon domain; InterPro: IPR015376 This domain has a zinc ribbon structure and is often found between two NUDIX domains.; GO: 0016787 hydrolase activity, 0046872 metal ion binding; PDB: 1VK6_A 2GB5_A.
Probab=25.11 E-value=25 Score=21.84 Aligned_cols=24 Identities=17% Similarity=0.250 Sum_probs=8.0
Q ss_pred cccCCCCccchhhhhcCCcCCCCC
Q 046127 212 YCVNCEEYKDEKELLENQCCPIHL 235 (345)
Q Consensus 212 yc~~c~~~l~d~el~~~~~c~~~~ 235 (345)
||+.|+.-....+-.-...|+.|+
T Consensus 5 fC~~CG~~t~~~~~g~~r~C~~Cg 28 (32)
T PF09297_consen 5 FCGRCGAPTKPAPGGWARRCPSCG 28 (32)
T ss_dssp B-TTT--BEEE-SSSS-EEESSSS
T ss_pred ccCcCCccccCCCCcCEeECCCCc
Confidence 555665543332221123355554
No 224
>COG2888 Predicted Zn-ribbon RNA-binding protein with a function in translation [Translation, ribosomal structure and biogenesis]
Probab=24.74 E-value=36 Score=24.76 Aligned_cols=32 Identities=19% Similarity=0.197 Sum_probs=15.8
Q ss_pred cccccCCCCccchhhhhcCCcCCCCCCCceEe
Q 046127 210 GLYCVNCEEYKDEKELLENQCCPIHLKPCVAR 241 (345)
Q Consensus 210 ~~yc~~c~~~l~d~el~~~~~c~~~~~pve~r 241 (345)
...|.+|+..|...|---..-|+.||+.+.+|
T Consensus 9 ~~~CtSCg~~i~p~e~~v~F~CPnCGe~~I~R 40 (61)
T COG2888 9 PPVCTSCGREIAPGETAVKFPCPNCGEVEIYR 40 (61)
T ss_pred CceeccCCCEeccCCceeEeeCCCCCceeeeh
Confidence 34566666666433322113466666544443
No 225
>PF01396 zf-C4_Topoisom: Topoisomerase DNA binding C4 zinc finger; InterPro: IPR013498 DNA topoisomerases regulate the number of topological links between two DNA strands (i.e. change the number of superhelical turns) by catalysing transient single- or double-strand breaks, crossing the strands through one another, then resealing the breaks []. These enzymes have several functions: to remove DNA supercoils during transcription and DNA replication; for strand breakage during recombination; for chromosome condensation; and to disentangle intertwined DNA during mitosis [, ]. DNA topoisomerases are divided into two classes: type I enzymes (5.99.1.2 from EC; topoisomerases I, III and V) break single-strand DNA, and type II enzymes (5.99.1.3 from EC; topoisomerases II, IV and VI) break double-strand DNA []. Type I topoisomerases are ATP-independent enzymes (except for reverse gyrase), and can be subdivided according to their structure and reaction mechanisms: type IA (bacterial and archaeal topoisomerase I, topoisomerase III and reverse gyrase) and type IB (eukaryotic topoisomerase I and topoisomerase V). These enzymes are primarily responsible for relaxing positively and/or negatively supercoiled DNA, except for reverse gyrase, which can introduce positive supercoils into DNA. This entry represents the zinc-finger domain found in type IA topoisomerases, including bacterial and archaeal topoisomerase I and III enzymes, and in eukaryotic topoisomerase III enzymes. Escherichia coli topoisomerase I proteins contain five copies of a zinc-ribbon-like domain at their C terminus, two of which have lost their cysteine residues and are therefore probably not able to bind zinc []. This domain is still considered to be a member of the zinc-ribbon superfamily despite not being able to bind zinc. More information about this protein can be found at Protein of the Month: DNA Topoisomerase [].; GO: 0003677 DNA binding, 0003916 DNA topoisomerase activity, 0006265 DNA topological change, 0005694 chromosome
Probab=24.52 E-value=50 Score=21.63 Aligned_cols=25 Identities=32% Similarity=0.561 Sum_probs=18.6
Q ss_pred CcCCCCCCCceEeeccc-cccchhHh
Q 046127 229 QCCPIHLKPCVARKEDN-YFFALSKY 253 (345)
Q Consensus 229 ~~c~~~~~pve~r~~~~-~f~~l~~~ 253 (345)
..|+.|+.++..|.... .|+-.+.|
T Consensus 2 ~~CP~Cg~~lv~r~~k~g~F~~Cs~y 27 (39)
T PF01396_consen 2 EKCPKCGGPLVLRRGKKGKFLGCSNY 27 (39)
T ss_pred cCCCCCCceeEEEECCCCCEEECCCC
Confidence 45899998888887765 77766655
No 226
>PF10007 DUF2250: Uncharacterized protein conserved in archaea (DUF2250); InterPro: IPR019254 Members of this family of hypothetical archaeal proteins have no known function.
Probab=24.47 E-value=67 Score=25.42 Aligned_cols=48 Identities=15% Similarity=0.010 Sum_probs=32.3
Q ss_pred HHHHHHHhhcCcccCccccCCChhhHHHHHHHHHHHHhCCCeeecccC
Q 046127 162 QAYKTLWKDLDIAYDKFIRTTEPKHEAIVKEFYSSVLANGDIYKADYE 209 (345)
Q Consensus 162 ~~~~~~l~~lgI~~D~f~~T~~~~~~~~v~~~~~~L~~kG~iy~~~~~ 209 (345)
-.|...|...|.++-..+.-.-..-.+.|.+.+.+|.+.|+|.+-.+.
T Consensus 10 ~~IL~hl~~~~~Dy~k~ia~~l~~~~~~v~~~l~~Le~~GLler~~g~ 57 (92)
T PF10007_consen 10 LKILQHLKKAGPDYAKSIARRLKIPLEEVREALEKLEEMGLLERVEGK 57 (92)
T ss_pred HHHHHHHHHHCCCcHHHHHHHHCCCHHHHHHHHHHHHHCCCeEEecCc
Confidence 345666777777765322111113456889999999999999987765
No 227
>COG1908 FrhD Coenzyme F420-reducing hydrogenase, delta subunit [Energy production and conversion]
Probab=23.95 E-value=1.9e+02 Score=24.29 Aligned_cols=48 Identities=23% Similarity=0.335 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHhhcCcccCc----cccCCC-hhhHHHHHHHHHHHHhCCCe
Q 046127 156 HCDVVSQAYKTLWKDLDIAYDK----FIRTTE-PKHEAIVKEFYSSVLANGDI 203 (345)
Q Consensus 156 ~~~~~~~~~~~~l~~lgI~~D~----f~~T~~-~~~~~~v~~~~~~L~~kG~i 203 (345)
.+++-.+..++.|+.+||..++ |++..+ ..+.+.+.++.+++.+-|-.
T Consensus 75 ka~rR~~~lke~l~elgie~eRv~~~wiSa~E~ekf~e~~~efv~~i~~lGpn 127 (132)
T COG1908 75 KAKRRMELLKELLKELGIEPERVRVLWISAAEGEKFAETINEFVERIKELGPN 127 (132)
T ss_pred HHHHHHHHHHHHHHHhCCCcceEEEEEEehhhHHHHHHHHHHHHHHHHHhCCC
Confidence 4555677889999999999873 344443 45777888888888876643
No 228
>PRK08270 anaerobic ribonucleoside triphosphate reductase; Provisional
Probab=23.79 E-value=1.2e+02 Score=32.68 Aligned_cols=48 Identities=17% Similarity=0.104 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHhC-CCeeecc-cCcccccCCCCccchhhhhcCCcCCCCCCCceE
Q 046127 188 AIVKEFYSSVLAN-GDIYKAD-YEGLYCVNCEEYKDEKELLENQCCPIHLKPCVA 240 (345)
Q Consensus 188 ~~v~~~~~~L~~k-G~iy~~~-~~~~yc~~c~~~l~d~el~~~~~c~~~~~pve~ 240 (345)
+.+.++++++.++ +..|-.- .+.-.|..|+- +. .+ ...||.||.++++
T Consensus 602 ~a~~~lv~~~~~~~~i~Y~~in~~~~~C~~CG~-~~-g~---~~~CP~CG~~~~v 651 (656)
T PRK08270 602 EACKKLVKKALENYRLPYITITPTFSICPKHGY-LS-GE---HEFCPKCGEETEV 651 (656)
T ss_pred HHHHHHHHHHHHhCCCceEEeCCCCcccCCCCC-cC-CC---CCCCcCCcCccce
Confidence 5566666666554 4555433 45667999994 32 11 2579999988654
No 229
>TIGR03831 YgiT_finger YgiT-type zinc finger domain. This domain model describes a small domain with two copies of a putative zinc-binding motif CXXC (usually CXXCG). Most member proteins consist largely of this domain or else carry an additional C-terminal helix-turn-helix domain, resembling that of the phage protein Cro and modeled by pfam01381.
Probab=23.77 E-value=43 Score=21.94 Aligned_cols=20 Identities=25% Similarity=0.280 Sum_probs=14.9
Q ss_pred CeeecccCcccccCCCCccc
Q 046127 202 DIYKADYEGLYCVNCEEYKD 221 (345)
Q Consensus 202 ~iy~~~~~~~yc~~c~~~l~ 221 (345)
.+..++.+.++|+.|++.+-
T Consensus 24 ~~~i~~vp~~~C~~CGE~~~ 43 (46)
T TIGR03831 24 LIVIENVPALVCPQCGEEYL 43 (46)
T ss_pred EEEEeCCCccccccCCCEee
Confidence 45566788999999997543
No 230
>PF00248 Aldo_ket_red: Aldo/keto reductase family; InterPro: IPR023210 The aldo-keto reductase family includes a number of related monomeric NADPH-dependent oxidoreductases, such as aldehyde reductase, aldose reductase, prostaglandin F synthase, xylose reductase, rho crystallin, and many others []. All possess a similar structure, with a beta-alpha-beta fold characteristic of nucleotide binding proteins []. The fold comprises a parallel beta-8/alpha-8-barrel, which contains a novel NADP-binding motif. The binding site is located in a large, deep, elliptical pocket in the C-terminal end of the beta sheet, the substrate being bound in an extended conformation. The hydrophobic nature of the pocket favours aromatic and apolar substrates over highly polar ones []. Binding of the NADPH coenzyme causes a massive conformational change, reorienting a loop, effectively locking the coenzyme in place. This binding is more similar to FAD- than to NAD(P)-binding oxidoreductases []. Some proteins of this entry contain a K+ ion channel beta chain regulatory domain; these are reported to have oxidoreductase activity []. This entry represents the NADP-dependent oxidoreductase domain found in these proteins.; PDB: 1C9W_A 4F40_B 1VBJ_A 1XGD_A 1X97_A 2ACS_A 1EF3_A 2ACU_A 1PWM_A 2NVD_A ....
Probab=23.67 E-value=1.4e+02 Score=27.43 Aligned_cols=47 Identities=17% Similarity=0.224 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHhhcCccc-Cccc--cCCChh-hHHHHHHHHHHHHhCCCee
Q 046127 158 DVVSQAYKTLWKDLDIAY-DKFI--RTTEPK-HEAIVKEFYSSVLANGDIY 204 (345)
Q Consensus 158 ~~~~~~~~~~l~~lgI~~-D~f~--~T~~~~-~~~~v~~~~~~L~~kG~iy 204 (345)
+.+.+.+.+.|++||+++ |.+. ...... ....+.+.+.+|.++|.|-
T Consensus 82 ~~i~~~~~~sL~~L~~d~iDl~~lH~~~~~~~~~~~~~~~l~~l~~~G~ir 132 (283)
T PF00248_consen 82 DSIRESLERSLERLGTDYIDLLLLHWPDPSEDALEEVWEALEELKKEGKIR 132 (283)
T ss_dssp HHHHHHHHHHHHHHTSSSEEEEEESSSSTTSSHHHHHHHHHHHHHHTTSEE
T ss_pred cccccccccccccccccchhccccccccccccccchhhhhhhhcccccccc
Confidence 467788999999999975 7332 112222 3777889999999999975
No 231
>cd01411 SIR2H SIR2H: Uncharacterized prokaryotic Sir2 homologs from several gram positive bacterial species and Fusobacteria; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span.
Probab=23.61 E-value=56 Score=29.91 Aligned_cols=29 Identities=21% Similarity=0.271 Sum_probs=21.6
Q ss_pred CcccccCCCCccchhhhhcCCcCCCCCCC
Q 046127 209 EGLYCVNCEEYKDEKELLENQCCPIHLKP 237 (345)
Q Consensus 209 ~~~yc~~c~~~l~d~el~~~~~c~~~~~p 237 (345)
....|..|+...+-.+....+.|+.|+.+
T Consensus 117 ~~~~C~~C~~~~~~~~~~~~p~C~~Cgg~ 145 (225)
T cd01411 117 YRIYCTVCGKTVDWEEYLKSPYHAKCGGV 145 (225)
T ss_pred CeeEeCCCCCccchhhcCCCCCCCCCCCE
Confidence 34669999877665555556889999975
No 232
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=23.34 E-value=4e+02 Score=21.49 Aligned_cols=29 Identities=31% Similarity=0.213 Sum_probs=21.7
Q ss_pred CCcCchhHHHHHHHHHHHHHHHHHcCCeEEEEcCC
Q 046127 101 NAPPHMGSAYTTIAADAIARFQRLLGKKVIFITGT 135 (345)
Q Consensus 101 nG~LHIGHar~~i~~DvlaR~lr~~G~~V~~v~G~ 135 (345)
.|..|- +-.++++.+++..|++|.+.-..
T Consensus 8 ~gd~H~------lG~~~~~~~l~~~G~~vi~lG~~ 36 (122)
T cd02071 8 GLDGHD------RGAKVIARALRDAGFEVIYTGLR 36 (122)
T ss_pred CCChhH------HHHHHHHHHHHHCCCEEEECCCC
Confidence 367663 45678888999999999976543
No 233
>TIGR00354 polC DNA polymerase, archaeal type II, large subunit. This model represents the large subunit, DP2, of a two subunit novel Archaeal replicative DNA polymerase first characterized for Pyrococcus furiosus. Structure of DP2 appears to be organized as a ~950 residue component separated from a ~300 residue component by a ~150 residue intein. The other subunit, DP1, has sequence similarity to the eukaryotic DNA polymerase delta small subunit.
Probab=23.26 E-value=1.1e+02 Score=34.34 Aligned_cols=64 Identities=9% Similarity=-0.005 Sum_probs=40.5
Q ss_pred HHHHHHHhCCCeeecccCcccccCCCCccchhhhhcCCcCCCCCCCceEeeccccccchhHhHHHHHHHH
Q 046127 192 EFYSSVLANGDIYKADYEGLYCVNCEEYKDEKELLENQCCPIHLKPCVARKEDNYFFALSKYQKLLEDTL 261 (345)
Q Consensus 192 ~~~~~L~~kG~iy~~~~~~~yc~~c~~~l~d~el~~~~~c~~~~~pve~r~~~~~f~~l~~~~~~L~e~l 261 (345)
..+.+-.++|-.++-+.....|++|+++-. ...|+.||++.+....-..=+++..+-....+.+
T Consensus 607 R~i~~A~~~g~~i~vev~~RKCPkCG~yTl------k~rCP~CG~~Te~~~pc~~~i~l~~~~~~A~~~l 670 (1095)
T TIGR00354 607 RDIKNAINYTKEIEVEIAIRKCPQCGKESF------WLKCPVCGELTEQLYYGKRKVDLRELYEEAIANL 670 (1095)
T ss_pred hhHHHHhccCCeeEEEEEEEECCCCCcccc------cccCCCCCCccccccceeEEecHHHHHHHHHHHh
Confidence 334444577855677888889999997622 2579999987543333344466666555555544
No 234
>COG1057 NadD Nicotinic acid mononucleotide adenylyltransferase [Coenzyme metabolism]
Probab=23.19 E-value=4.9e+02 Score=23.38 Aligned_cols=72 Identities=19% Similarity=0.223 Sum_probs=37.2
Q ss_pred CCCEEEEccCCCCCCcCchhHHHHHHHHHHHHHHHHHcCCeEEEE-cCCCCcChHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 046127 88 ADPFVLTTPLYYVNAPPHMGSAYTTIAADAIARFQRLLGKKVIFI-TGTDEHGEKIAAAAADGGSSPSEHCDVVSQAYKT 166 (345)
Q Consensus 88 ~~~~~I~~~~PypnG~LHIGHar~~i~~DvlaR~lr~~G~~V~~v-~G~D~~G~~I~~~A~~~g~~p~~~~~~~~~~~~~ 166 (345)
+.++.|..+.. .|+|.||+. +++.+.+.+. =-+|.++ ++...|... .+..+.+-.-.+.+...+
T Consensus 2 ~~~i~lfGGsF---dP~H~GHl~---ia~~~~~~l~--ld~vi~~ps~~~p~k~~-------~~~a~~~~R~~Ml~la~~ 66 (197)
T COG1057 2 MKKIALFGGSF---DPPHYGHLL---IAEEALDQLG--LDKVIFLPSPVPPHKKK-------KELASAEHRLAMLELAIE 66 (197)
T ss_pred CceEEEeccCC---CCCCHHHHH---HHHHHHHhcC--CCeEEEecCCCCCCCCC-------ccCCCHHHHHHHHHHHHh
Confidence 35566666654 689999986 4455544321 1345554 666666431 223333333344444444
Q ss_pred HHhhcCcc
Q 046127 167 LWKDLDIA 174 (345)
Q Consensus 167 ~l~~lgI~ 174 (345)
+...+-|+
T Consensus 67 ~~~~~~v~ 74 (197)
T COG1057 67 DNPRFEVS 74 (197)
T ss_pred cCCCccee
Confidence 44444444
No 235
>cd00729 rubredoxin_SM Rubredoxin, Small Modular nonheme iron binding domain containing a [Fe(SCys)4] center, present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=22.93 E-value=50 Score=20.95 Aligned_cols=27 Identities=26% Similarity=0.441 Sum_probs=18.2
Q ss_pred cccccCCCCccchhhhhcCCcCCCCCCCc
Q 046127 210 GLYCVNCEEYKDEKELLENQCCPIHLKPC 238 (345)
Q Consensus 210 ~~yc~~c~~~l~d~el~~~~~c~~~~~pv 238 (345)
.|-|..||-.....+. +..|+.||.+-
T Consensus 2 ~~~C~~CG~i~~g~~~--p~~CP~Cg~~~ 28 (34)
T cd00729 2 VWVCPVCGYIHEGEEA--PEKCPICGAPK 28 (34)
T ss_pred eEECCCCCCEeECCcC--CCcCcCCCCch
Confidence 4678899965544332 35799999873
No 236
>cd03784 GT1_Gtf_like This family includes the Gtfs, a group of homologous glycosyltransferases involved in the final stages of the biosynthesis of antibiotics vancomycin and related chloroeremomycin. Gtfs transfer sugar moieties from an activated NDP-sugar donor to the oxidatively cross-linked heptapeptide core of vancomycin group antibiotics. The core structure is important for the bioactivity of the antibiotics.
Probab=22.58 E-value=1.4e+02 Score=29.04 Aligned_cols=27 Identities=26% Similarity=0.246 Sum_probs=22.8
Q ss_pred hhHHHHHHHHHHHHHHHHHcCCeEEEEcCC
Q 046127 106 MGSAYTTIAADAIARFQRLLGKKVIFITGT 135 (345)
Q Consensus 106 IGHar~~i~~DvlaR~lr~~G~~V~~v~G~ 135 (345)
.||+.+.+ .+++.++.+||+|.+.++-
T Consensus 11 ~GHv~P~l---~la~~L~~rGh~V~~~t~~ 37 (401)
T cd03784 11 RGDVQPLV---ALAWALRAAGHEVRVATPP 37 (401)
T ss_pred cchHHHHH---HHHHHHHHCCCeEEEeeCH
Confidence 69998876 6888889999999997664
No 237
>PRK06260 threonine synthase; Validated
Probab=22.07 E-value=55 Score=32.58 Aligned_cols=30 Identities=23% Similarity=0.377 Sum_probs=23.0
Q ss_pred cccccCCCCccchhhhhcCCcCCCCCCCceEe
Q 046127 210 GLYCVNCEEYKDEKELLENQCCPIHLKPCVAR 241 (345)
Q Consensus 210 ~~yc~~c~~~l~d~el~~~~~c~~~~~pve~r 241 (345)
.+.|..|++-++..+.. ..|+.|+.+++..
T Consensus 3 ~~~C~~cg~~~~~~~~~--~~Cp~cg~~l~~~ 32 (397)
T PRK06260 3 WLKCIECGKEYDPDEII--YTCPECGGLLEVI 32 (397)
T ss_pred EEEECCCCCCCCCCCcc--ccCCCCCCeEEEE
Confidence 36799999988766664 4699999887655
No 238
>smart00550 Zalpha Z-DNA-binding domain in adenosine deaminases. Helix-turn-helix-containing domain. Also known as Zab.
Probab=21.68 E-value=1.4e+02 Score=21.78 Aligned_cols=30 Identities=17% Similarity=0.176 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHhCCCeeecc-cCcccccCCC
Q 046127 188 AIVKEFYSSVLANGDIYKAD-YEGLYCVNCE 217 (345)
Q Consensus 188 ~~v~~~~~~L~~kG~iy~~~-~~~~yc~~c~ 217 (345)
..|..++.+|.+.|+|.... .+..|...+.
T Consensus 37 ~~v~r~L~~L~~~G~V~~~~~~~~~W~i~~~ 67 (68)
T smart00550 37 KEVNRVLYSLEKKGKVCKQGGTPPLWKLTDK 67 (68)
T ss_pred HHHHHHHHHHHHCCCEEecCCCCCceEeecC
Confidence 47889999999999998766 4477766553
No 239
>TIGR00155 pqiA_fam integral membrane protein, PqiA family. This family consists of uncharacterized predicted integral membrane proteins found, so far, only in the Proteobacteria. Of two members in E. coli, one is induced by paraquat and is designated PqiA, paraquat-inducible protein A.
Probab=21.65 E-value=50 Score=33.17 Aligned_cols=30 Identities=20% Similarity=0.367 Sum_probs=21.1
Q ss_pred cccccCCCCccchhhhhcCCcCCCCCCCceEee
Q 046127 210 GLYCVNCEEYKDEKELLENQCCPIHLKPCVARK 242 (345)
Q Consensus 210 ~~yc~~c~~~l~d~el~~~~~c~~~~~pve~r~ 242 (345)
..-|+.|+..+...+ ..+|++||+++..+.
T Consensus 215 ~~~C~~Cd~~~~~~~---~a~CpRC~~~L~~~~ 244 (403)
T TIGR00155 215 LRSCSACHTTILPAQ---EPVCPRCSTPLYVRR 244 (403)
T ss_pred CCcCCCCCCccCCCC---CcCCcCCCCcccCCC
Confidence 445999998665422 257999999875443
No 240
>COG4640 Predicted membrane protein [Function unknown]
Probab=21.57 E-value=45 Score=33.30 Aligned_cols=24 Identities=21% Similarity=0.487 Sum_probs=16.1
Q ss_pred ccccCCCCccchhhhhcCCcCCCCCCCc
Q 046127 211 LYCVNCEEYKDEKELLENQCCPIHLKPC 238 (345)
Q Consensus 211 ~yc~~c~~~l~d~el~~~~~c~~~~~pv 238 (345)
-||+.||.--.+.++ .|+.||+++
T Consensus 2 ~fC~kcG~qk~Ed~~----qC~qCG~~~ 25 (465)
T COG4640 2 KFCPKCGSQKAEDDV----QCTQCGHKF 25 (465)
T ss_pred Ccccccccccccccc----cccccCCcC
Confidence 589999964443333 388998764
No 241
>PRK00448 polC DNA polymerase III PolC; Validated
Probab=21.51 E-value=1.1e+02 Score=35.91 Aligned_cols=79 Identities=15% Similarity=0.205 Sum_probs=46.6
Q ss_pred hhHHHHHHHHHHHHhCCCeeeccc--------------------CcccccCCCC--ccchhhhhc-----CCcCCCCCCC
Q 046127 185 KHEAIVKEFYSSVLANGDIYKADY--------------------EGLYCVNCEE--YKDEKELLE-----NQCCPIHLKP 237 (345)
Q Consensus 185 ~~~~~v~~~~~~L~~kG~iy~~~~--------------------~~~yc~~c~~--~l~d~el~~-----~~~c~~~~~p 237 (345)
.|.-.++++++.-.++|++.-..+ +-|.|++|.- |..+.++.. +..||.||++
T Consensus 863 ~yflIv~~lV~~a~~~g~lVG~RGS~~gSlVAy~lgITeVdPL~phy~C~~C~~~ef~~~~~~~sG~Dlpdk~Cp~Cg~~ 942 (1437)
T PRK00448 863 VIYLISQKLVKKSLEDGYLVGSRGSVGSSFVATMIGITEVNPLPPHYVCPNCKYSEFFTDGSVGSGFDLPDKDCPKCGTK 942 (1437)
T ss_pred hhHHHHHHHHHHHHHCCceECCCCcHHHHHHHHHhcCCCcCCCCccccCcccccccccccccccccccCccccCcccccc
Confidence 455567777777778887663322 4578999973 333322221 3569999976
Q ss_pred ce---------------Eeeccccccchh-HhHHHHHHHHhc
Q 046127 238 CV---------------ARKEDNYFFALS-KYQKLLEDTLTE 263 (345)
Q Consensus 238 ve---------------~r~~~~~f~~l~-~~~~~L~e~l~~ 263 (345)
+. ..+.+--=++.+ .+|+.+.+|++.
T Consensus 943 ~~kdg~~l~FErFL~~~r~~~PDIDldF~~~~r~~v~~Yv~~ 984 (1437)
T PRK00448 943 LKKDGHDIPFETFLGFKGDKVPDIDLNFSGEYQPVAHNYTKV 984 (1437)
T ss_pred ccccCCCceeeeccCCCCCCCCCCcccCccccHHHHHHHHHH
Confidence 32 223333333332 577888777764
No 242
>PRK14715 DNA polymerase II large subunit; Provisional
Probab=21.43 E-value=1e+02 Score=35.69 Aligned_cols=66 Identities=9% Similarity=0.116 Sum_probs=47.7
Q ss_pred HHHHHHHHhCCCeeecccCcccccCCCCccchhhhhcCCcCCCCCCCceEeeccccccchhHhHHHHHHHHh
Q 046127 191 KEFYSSVLANGDIYKADYEGLYCVNCEEYKDEKELLENQCCPIHLKPCVARKEDNYFFALSKYQKLLEDTLT 262 (345)
Q Consensus 191 ~~~~~~L~~kG~iy~~~~~~~yc~~c~~~l~d~el~~~~~c~~~~~pve~r~~~~~f~~l~~~~~~L~e~l~ 262 (345)
+..+.+-.+.|.+..-+-...-||+|++.-. ...|+.||+.++.......=+++..+-....+.+.
T Consensus 655 ~R~i~~A~~~g~~~~vei~~~~Cp~Cg~~~~------~~~Cp~CG~~~~~~~~~~~~i~~~~~~~~A~~~v~ 720 (1627)
T PRK14715 655 VRLINKAVEENKTDDIEIAFFKCPKCGKVGL------YHVCPFCGTRVELKPYARREIPPKDYWYAALENLK 720 (1627)
T ss_pred hhhHHHHhhcCCcceEEEEeeeCCCCCCccc------cccCcccCCcccCCCccceecCHHHHHHHHHHHhC
Confidence 3445555678888777777778999997422 26799999998888777777888776665555554
No 243
>PRK15103 paraquat-inducible membrane protein A; Provisional
Probab=21.42 E-value=50 Score=33.36 Aligned_cols=31 Identities=19% Similarity=0.405 Sum_probs=21.3
Q ss_pred ccccCCCCccchhhhhc--CCcCCCCCCCceEe
Q 046127 211 LYCVNCEEYKDEKELLE--NQCCPIHLKPCVAR 241 (345)
Q Consensus 211 ~yc~~c~~~l~d~el~~--~~~c~~~~~pve~r 241 (345)
.-|+.|+.......+.. ..+|++||.++..+
T Consensus 11 ~~C~~Cd~l~~~~~l~~g~~a~CpRCg~~L~~~ 43 (419)
T PRK15103 11 ILCPQCDMLVALPRLEHGQKAACPRCGTTLTVR 43 (419)
T ss_pred ccCCCCCceeecCCCCCCCeeECCCCCCCCcCC
Confidence 33999998876554432 24699999987443
No 244
>PRK06450 threonine synthase; Validated
Probab=21.36 E-value=56 Score=31.87 Aligned_cols=28 Identities=14% Similarity=0.229 Sum_probs=19.4
Q ss_pred ccccCCCCccchhhhhcCCcCCCCCCCceEe
Q 046127 211 LYCVNCEEYKDEKELLENQCCPIHLKPCVAR 241 (345)
Q Consensus 211 ~yc~~c~~~l~d~el~~~~~c~~~~~pve~r 241 (345)
+.|..|++..++ +.. ..|+.||.+++..
T Consensus 4 ~~C~~Cg~~~~~-~~~--~~C~~cg~~l~~~ 31 (338)
T PRK06450 4 EVCMKCGKERES-IYE--IRCKKCGGPFEIL 31 (338)
T ss_pred eEECCcCCcCCC-ccc--ccCCcCCCEeEEe
Confidence 578899887654 222 4688888776655
No 245
>COG3364 Zn-ribbon containing protein [General function prediction only]
Probab=21.34 E-value=40 Score=27.22 Aligned_cols=26 Identities=27% Similarity=0.414 Sum_probs=18.6
Q ss_pred ccccCCCCccch-hhhhcCCcCCCCCCC
Q 046127 211 LYCVNCEEYKDE-KELLENQCCPIHLKP 237 (345)
Q Consensus 211 ~yc~~c~~~l~d-~el~~~~~c~~~~~p 237 (345)
+-|.+|++..++ ++.+- ..|+.||..
T Consensus 3 H~CtrCG~vf~~g~~~il-~GCp~CG~n 29 (112)
T COG3364 3 HQCTRCGEVFDDGSEEIL-SGCPKCGCN 29 (112)
T ss_pred ceecccccccccccHHHH-ccCccccch
Confidence 469999999987 33332 459999853
No 246
>smart00345 HTH_GNTR helix_turn_helix gluconate operon transcriptional repressor.
Probab=21.14 E-value=1.3e+02 Score=20.31 Aligned_cols=25 Identities=24% Similarity=0.317 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHhCCCeeecccCccc
Q 046127 188 AIVKEFYSSVLANGDIYKADYEGLY 212 (345)
Q Consensus 188 ~~v~~~~~~L~~kG~iy~~~~~~~y 212 (345)
..+...+.+|.+.|+|....+.+++
T Consensus 35 ~tv~~~l~~L~~~g~i~~~~~~g~~ 59 (60)
T smart00345 35 TTVREALSRLEAEGLVQRRPGSGTF 59 (60)
T ss_pred HHHHHHHHHHHHCCCEEEecCCeeE
Confidence 5788899999999999877665543
No 247
>TIGR00155 pqiA_fam integral membrane protein, PqiA family. This family consists of uncharacterized predicted integral membrane proteins found, so far, only in the Proteobacteria. Of two members in E. coli, one is induced by paraquat and is designated PqiA, paraquat-inducible protein A.
Probab=20.79 E-value=56 Score=32.82 Aligned_cols=30 Identities=13% Similarity=0.360 Sum_probs=20.9
Q ss_pred ccccCCCCccchhhhhc--CCcCCCCCCCceE
Q 046127 211 LYCVNCEEYKDEKELLE--NQCCPIHLKPCVA 240 (345)
Q Consensus 211 ~yc~~c~~~l~d~el~~--~~~c~~~~~pve~ 240 (345)
.=|+.|+.......+.. ..+|+|||.++..
T Consensus 14 ~~C~~Cd~l~~~~~l~~g~~a~CpRCg~~L~~ 45 (403)
T TIGR00155 14 ILCSQCDMLVALPRIESGQKAACPRCGTTLTV 45 (403)
T ss_pred eeCCCCCCcccccCCCCCCeeECCCCCCCCcC
Confidence 34999998876544432 2469999998743
No 248
>PF13719 zinc_ribbon_5: zinc-ribbon domain
Probab=20.60 E-value=81 Score=20.30 Aligned_cols=26 Identities=23% Similarity=0.409 Sum_probs=16.4
Q ss_pred cccCCCCcc--chhhhhcC---CcCCCCCCC
Q 046127 212 YCVNCEEYK--DEKELLEN---QCCPIHLKP 237 (345)
Q Consensus 212 yc~~c~~~l--~d~el~~~---~~c~~~~~p 237 (345)
-||+|++.+ ++..+... -.|+.|++.
T Consensus 4 ~CP~C~~~f~v~~~~l~~~~~~vrC~~C~~~ 34 (37)
T PF13719_consen 4 TCPNCQTRFRVPDDKLPAGGRKVRCPKCGHV 34 (37)
T ss_pred ECCCCCceEEcCHHHcccCCcEEECCCCCcE
Confidence 489999865 45544432 348888753
No 249
>PF01155 HypA: Hydrogenase expression/synthesis hypA family; InterPro: IPR000688 Bacterial membrane-bound nickel-dependent hydrogenases requires a number of accessory proteins which are involved in their maturation. The exact role of these proteins is not yet clear, but some seem to be required for the incorporation of the nickel ions []. One of these proteins is generally known as hypA. It is a protein of about 12 to 14 kDa that contains, in its C-terminal region, four conserved cysteines that form a zinc-finger like motif. Escherichia coli has two proteins that belong to this family, hypA and hybF. A homologue, MJ0214, has also been found in a number of archaeal species, including the genome of Methanocaldococcus jannaschii (Methanococcus jannaschii).; GO: 0016151 nickel ion binding, 0006464 protein modification process; PDB: 2KDX_A 3A44_D 3A43_B.
Probab=20.53 E-value=50 Score=26.93 Aligned_cols=86 Identities=10% Similarity=0.088 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHHHhhcCcc-cC---ccccCCChhhHHHHHHHHHHHHhCCCee-------ecccCcccccCCCCccchhh
Q 046127 156 HCDVVSQAYKTLWKDLDIA-YD---KFIRTTEPKHEAIVKEFYSSVLANGDIY-------KADYEGLYCVNCEEYKDEKE 224 (345)
Q Consensus 156 ~~~~~~~~~~~~l~~lgI~-~D---~f~~T~~~~~~~~v~~~~~~L~~kG~iy-------~~~~~~~yc~~c~~~l~d~e 224 (345)
+++...+...+..++-|.. .. .-+-..+-.-.+..+-.|..+. +|-+. +......+|..|+.-.+-.+
T Consensus 6 i~~~iv~~v~~~a~~~~~~kV~~V~l~iG~ls~V~pe~L~f~f~~~~-~~T~~e~a~L~Ie~~p~~~~C~~Cg~~~~~~~ 84 (113)
T PF01155_consen 6 IAQSIVEIVEEEAEENGAKKVTKVRLEIGELSGVEPEALRFAFEVLA-EGTILEGAELEIEEVPARARCRDCGHEFEPDE 84 (113)
T ss_dssp HHHHHHHHHHHHHHCTT-SEEEEEEEEEETTS---HHHHHHHHHHHH-CCSTTTT-EEEEEEE--EEEETTTS-EEECHH
T ss_pred HHHHHHHHHHHHHHHcCCCEEEEEEEEECCcccCCHHHHHHHHHHHh-CCCCccCCEEEEEecCCcEECCCCCCEEecCC
Confidence 4455555555555555542 11 1111222233445555566554 34333 33456889999998776554
Q ss_pred hhcCCcCCCCCCC-ceEeecc
Q 046127 225 LLENQCCPIHLKP-CVARKED 244 (345)
Q Consensus 225 l~~~~~c~~~~~p-ve~r~~~ 244 (345)
.. ..||.||.+ +++..-+
T Consensus 85 ~~--~~CP~Cgs~~~~i~~G~ 103 (113)
T PF01155_consen 85 FD--FSCPRCGSPDVEIISGR 103 (113)
T ss_dssp CC--HH-SSSSSS-EEEEESS
T ss_pred CC--CCCcCCcCCCcEEccCC
Confidence 44 459999987 3444333
No 250
>PRK14138 NAD-dependent deacetylase; Provisional
Probab=20.40 E-value=1.7e+02 Score=27.11 Aligned_cols=53 Identities=17% Similarity=0.251 Sum_probs=30.1
Q ss_pred CcccccCCCCccchhhhh------cCCcCCCCCCCceEeeccccccc-h-hHhHHHHHHHHhc
Q 046127 209 EGLYCVNCEEYKDEKELL------ENQCCPIHLKPCVARKEDNYFFA-L-SKYQKLLEDTLTE 263 (345)
Q Consensus 209 ~~~yc~~c~~~l~d~el~------~~~~c~~~~~pve~r~~~~~f~~-l-~~~~~~L~e~l~~ 263 (345)
.-..|.+|+...+-.++. ..+.|+.|+.+ .|+---||=. + ....+.+.+.+++
T Consensus 118 ~~~~C~~C~~~~~~~~~~~~~~~~~~p~Cp~Cgg~--lrP~Vv~FgE~~p~~~~~~~~~~~~~ 178 (244)
T PRK14138 118 EEYYCVRCGKRYTVEDVIEKLEKSDVPRCDDCSGL--IRPNIVFFGEALPQDALREAIRLSSK 178 (244)
T ss_pred CeeEECCCCCcccHHHHHHHHhcCCCCCCCCCCCe--ECCCEEECCCcCCHHHHHHHHHHHhc
Confidence 456699999876654432 24779999975 3443344422 1 1233445555554
No 251
>cd02174 CCT CTP:phosphocholine cytidylyltransferase. CTP:phosphocholine cytidylyltransferase (CCT) catalyzes the condensation of CTP and phosphocholine to form CDP-choline as the rate-limiting and regulatory step in the CDP-choline pathway. CCT is unique in that its enzymatic activity is regulated by the extent of its association with membrane structures. A current model posts that the elastic stress of the bilayer curvature is sensed by CCT and this governs the degree of membrane association, thus providing a mechanism for both positive and negative regulation of activity.
Probab=20.37 E-value=1.8e+02 Score=24.90 Aligned_cols=29 Identities=31% Similarity=0.346 Sum_probs=18.0
Q ss_pred CcCchhHHHHHHHHHHHHHHHHHcC--CeEEEEcCCCC
Q 046127 102 APPHMGSAYTTIAADAIARFQRLLG--KKVIFITGTDE 137 (345)
Q Consensus 102 G~LHIGHar~~i~~DvlaR~lr~~G--~~V~~v~G~D~ 137 (345)
.++|.||+. +|.+. +..| -.+....+.|.
T Consensus 12 Dl~H~GHi~------~L~~A-~~lg~~d~LiVgV~sD~ 42 (150)
T cd02174 12 DLFHYGHAN------ALRQA-KKLGPNDYLIVGVHSDE 42 (150)
T ss_pred CCCCHHHHH------HHHHH-HHhCCCCEEEEEEecCH
Confidence 789999986 22332 4556 55665565653
No 252
>cd07377 WHTH_GntR Winged helix-turn-helix (WHTH) DNA-binding domain of the GntR family of transcriptional regulators. This CD represents the winged HTH DNA-binding domain of the GntR (named after the gluconate operon repressor in Bacillus subtilis) family of bacterial transcriptional regulators and their putative homologs found in eukaryota and archaea. The GntR family has over 6000 members distributed among almost all bacterial species, which is comprised of FadR, HutC, MocR, YtrA, AraR, PlmA, and other subfamilies for the regulation of the most varied biological process. The monomeric proteins of the GntR family are characterized by two function domains: a small highly conserved winged helix-turn-helix prokaryotic DNA binding domain in the N-terminus, and a very diverse regulatory ligand-binding domain in the C-terminus for effector-binding/oligomerization, which provides the basis for the subfamily classifications. Binding of the effector to GntR-like transcriptional regulators is
Probab=20.27 E-value=1.3e+02 Score=20.66 Aligned_cols=26 Identities=19% Similarity=0.275 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHhCCCeeecccCccc
Q 046127 187 EAIVKEFYSSVLANGDIYKADYEGLY 212 (345)
Q Consensus 187 ~~~v~~~~~~L~~kG~iy~~~~~~~y 212 (345)
...+...+.+|.+.|+|....+.+++
T Consensus 39 ~~~v~~~l~~L~~~G~i~~~~~~~~~ 64 (66)
T cd07377 39 RTTVREALRELEAEGLVERRPGRGTF 64 (66)
T ss_pred HHHHHHHHHHHHHCCCEEecCCCeEE
Confidence 46788999999999999876655554
No 253
>PF07191 zinc-ribbons_6: zinc-ribbons; InterPro: IPR010807 This family consists of several short, hypothetical bacterial proteins of around 70 residues in length. Members of this family 8 highly conserved cysteine residues. The function of the family is unknown.; PDB: 2JRP_A 2JNE_A.
Probab=20.17 E-value=50 Score=24.84 Aligned_cols=29 Identities=21% Similarity=0.431 Sum_probs=15.0
Q ss_pred CcccccCCCCccchhhhhcCCcCCCCCCCceEee
Q 046127 209 EGLYCVNCEEYKDEKELLENQCCPIHLKPCVARK 242 (345)
Q Consensus 209 ~~~yc~~c~~~l~d~el~~~~~c~~~~~pve~r~ 242 (345)
..++|..|+. +..-.+.||.|+.|+|..+
T Consensus 16 ~~~~C~~C~~-----~~~~~a~CPdC~~~Le~Lk 44 (70)
T PF07191_consen 16 GHYHCEACQK-----DYKKEAFCPDCGQPLEVLK 44 (70)
T ss_dssp TEEEETTT-------EEEEEEE-TTT-SB-EEEE
T ss_pred CEEECccccc-----cceecccCCCcccHHHHHH
Confidence 4556666664 2222367999999988765
No 254
>COG3024 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.13 E-value=54 Score=24.20 Aligned_cols=16 Identities=38% Similarity=0.495 Sum_probs=12.5
Q ss_pred cCCCCCCCceEeeccc
Q 046127 230 CCPIHLKPCVARKEDN 245 (345)
Q Consensus 230 ~c~~~~~pve~r~~~~ 245 (345)
-|+.||+|+++.++.-
T Consensus 9 ~CP~Cgkpv~w~~~s~ 24 (65)
T COG3024 9 PCPTCGKPVVWGEESP 24 (65)
T ss_pred cCCCCCCcccccccCC
Confidence 4999999998866543
Done!