Query 046127
Match_columns 345
No_of_seqs 225 out of 2172
Neff 7.1
Searched_HMMs 29240
Date Mon Mar 25 15:39:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046127.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/046127hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4dlp_A Aminoacyl-tRNA syntheta 100.0 9.8E-61 3.4E-65 488.6 22.5 254 87-344 23-279 (536)
2 3kfl_A Methionyl-tRNA syntheta 100.0 4.9E-61 1.7E-65 493.4 15.8 259 86-344 23-297 (564)
3 3u1f_A Methionyl-tRNA syntheta 100.0 7.4E-61 2.5E-65 489.6 15.8 243 86-328 6-259 (542)
4 1rqg_A Methionyl-tRNA syntheta 100.0 6.7E-60 2.3E-64 496.8 18.0 249 89-341 2-283 (722)
5 3h99_A Methionyl-tRNA syntheta 100.0 5E-58 1.7E-62 470.8 16.1 257 84-343 13-297 (560)
6 2d5b_A Methionyl-tRNA syntheta 100.0 2.8E-57 9.6E-62 459.0 17.8 250 88-343 2-253 (500)
7 2x1l_A Methionyl-tRNA syntheta 100.0 3.2E-57 1.1E-61 461.3 18.1 256 86-344 9-268 (524)
8 2csx_A Methionyl-tRNA syntheta 100.0 3.4E-56 1.2E-60 451.0 15.6 236 88-323 4-241 (497)
9 1ile_A Ilers, isoleucyl-tRNA s 100.0 9.9E-52 3.4E-56 440.6 12.8 251 87-344 36-547 (821)
10 1gax_A Valrs, valyl-tRNA synth 100.0 2.4E-50 8.4E-55 430.0 21.3 264 74-344 19-484 (862)
11 1ffy_A Isoleucyl-tRNA syntheta 100.0 3.9E-49 1.3E-53 423.5 16.1 233 86-322 45-505 (917)
12 2v0c_A Aminoacyl-tRNA syntheta 100.0 1.6E-46 5.5E-51 401.7 19.7 203 75-281 17-224 (878)
13 1wkb_A Leucyl-tRNA synthetase; 100.0 1.5E-45 5.2E-50 392.7 15.4 137 88-224 33-197 (810)
14 1wz2_A Leucyl-tRNA synthetase; 100.0 1.6E-44 5.3E-49 390.5 15.4 136 89-224 34-197 (967)
15 4arc_A Leucine--tRNA ligase; l 100.0 9.1E-43 3.1E-47 371.2 19.7 206 74-282 37-245 (880)
16 2zue_A Arginyl-tRNA synthetase 100.0 8.9E-31 3E-35 271.4 10.3 275 19-325 47-403 (629)
17 1iq0_A Arginyl-tRNA synthetase 100.0 6.4E-29 2.2E-33 256.2 11.2 265 19-325 41-373 (592)
18 3c8z_A Cysteinyl-tRNA syntheta 100.0 3.1E-28 1E-32 241.2 14.3 117 90-208 39-156 (414)
19 3tqo_A Cysteinyl-tRNA syntheta 99.9 3.8E-25 1.3E-29 220.8 15.3 130 88-219 23-154 (462)
20 1li5_A Cysrs, cysteinyl-tRNA s 99.9 1.4E-24 4.9E-29 217.5 14.1 127 87-217 21-149 (461)
21 3sp1_A Cysteinyl-tRNA syntheta 99.9 2.9E-24 9.7E-29 215.7 11.6 127 88-217 42-178 (501)
22 1f7u_A Arginyl-tRNA synthetase 99.9 5.9E-23 2E-27 211.7 11.1 181 26-213 84-325 (607)
23 1irx_A Lysyl-tRNA synthetase; 99.7 3.5E-19 1.2E-23 181.1 3.8 109 91-201 21-147 (523)
24 3fnr_A Arginyl-tRNA synthetase 99.7 8.8E-18 3E-22 168.1 10.4 134 78-213 19-198 (464)
25 1nzj_A Hypothetical protein YA 99.0 1.1E-10 3.8E-15 110.4 5.4 94 92-205 6-100 (298)
26 3aii_A Glutamyl-tRNA synthetas 99.0 2.6E-10 8.9E-15 115.4 5.7 94 92-205 97-190 (553)
27 2o5r_A Glutamyl-tRNA synthetas 99.0 7.1E-10 2.4E-14 111.4 7.3 99 89-205 11-116 (481)
28 1qtq_A GLNRS, protein (glutami 98.9 1.1E-09 3.9E-14 110.8 7.2 94 92-205 27-121 (553)
29 3al0_C Glutamyl-tRNA(Gln) amid 98.8 5.4E-09 1.8E-13 107.3 9.2 96 89-205 128-232 (592)
30 2hz7_A Glutaminyl-tRNA synthet 98.8 2E-09 7E-14 113.5 6.0 94 92-205 67-161 (851)
31 2cfo_A Glutamyl-tRNA synthetas 98.8 1.9E-09 6.6E-14 108.4 5.5 94 92-205 2-96 (492)
32 4g6z_A Glutamate-tRNA ligase; 98.7 1.8E-08 6.1E-13 101.0 8.4 94 92-205 26-120 (490)
33 3afh_A Glutamyl-tRNA synthetas 98.7 3E-08 1E-12 99.6 7.4 94 92-205 26-128 (488)
34 4gri_A Glutamate--tRNA ligase; 98.7 2.4E-08 8.2E-13 101.0 6.8 96 92-205 25-127 (512)
35 1j09_A Glutamyl-tRNA synthetas 98.6 4.9E-08 1.7E-12 97.6 6.4 96 92-205 2-104 (468)
36 2ja2_A Glutamyl-tRNA synthetas 98.5 8.6E-08 2.9E-12 96.4 7.1 94 92-205 7-109 (498)
37 4arc_A Leucine--tRNA ligase; l 97.4 4.2E-05 1.4E-09 81.8 2.5 18 284-302 436-453 (880)
38 3jxe_A Tryptophanyl-tRNA synth 95.8 0.034 1.2E-06 54.0 9.4 93 89-192 72-167 (392)
39 2cyb_A Tyrosyl-tRNA synthetase 95.7 0.039 1.3E-06 52.1 9.6 66 99-176 40-105 (323)
40 3tzl_A Tryptophanyl-tRNA synth 95.6 0.011 3.9E-07 55.9 5.1 65 99-176 11-75 (322)
41 1i6k_A TRPRS, tryptophanyl-tRN 95.0 0.03 1E-06 53.1 6.2 64 100-176 10-73 (328)
42 3a04_A Tryptophanyl-tRNA synth 95.0 0.07 2.4E-06 51.5 8.7 77 88-176 68-144 (372)
43 2dlc_X Tyrosyl-tRNA synthetase 94.9 0.064 2.2E-06 52.2 8.2 72 99-177 47-118 (394)
44 3hzr_A Tryptophanyl-tRNA synth 94.8 0.097 3.3E-06 50.8 9.1 77 88-176 80-156 (386)
45 1n3l_A Tyrosyl-tRNA synthetase 94.8 0.084 2.9E-06 50.9 8.6 66 100-176 44-113 (372)
46 2g36_A Tryptophanyl-tRNA synth 94.3 0.096 3.3E-06 49.9 7.8 73 91-176 14-86 (340)
47 2cya_A Tyrosyl-tRNA synthetase 94.2 0.12 4E-06 49.8 8.1 68 99-176 43-110 (364)
48 2zp1_A Tyrosyl-tRNA synthetase 94.0 0.2 6.7E-06 47.2 9.1 67 100-179 37-103 (314)
49 3prh_A Tryptophanyl-tRNA synth 93.9 0.088 3E-06 51.1 6.5 83 93-189 38-123 (388)
50 3foc_A Tryptophanyl-tRNA synth 93.8 0.3 1E-05 48.3 10.2 78 88-176 89-167 (451)
51 1yi8_B Tryptophanyl-tRNA synth 93.7 0.088 3E-06 50.4 6.1 74 89-176 22-95 (351)
52 3vgj_A Tyrosyl-tRNA synthetase 93.5 0.096 3.3E-06 50.6 6.0 69 99-176 64-132 (373)
53 1r6t_A Tryptophanyl-tRNA synth 93.4 0.13 4.5E-06 51.2 7.0 77 88-176 153-230 (477)
54 2el7_A Tryptophanyl-tRNA synth 93.4 0.16 5.5E-06 48.2 7.3 67 100-176 10-77 (337)
55 3hv0_A Tryptophanyl-tRNA synth 93.2 0.29 9.9E-06 47.5 8.9 78 88-176 72-150 (393)
56 3sz3_A Tryptophanyl-tRNA synth 93.1 0.12 4E-06 49.4 5.9 71 91-176 8-78 (341)
57 2ip1_A Tryptophanyl-tRNA synth 92.9 0.18 6.2E-06 49.5 7.1 77 89-176 101-178 (432)
58 1r6u_A Tryptophanyl-tRNA synth 92.8 0.19 6.5E-06 49.5 7.0 77 88-176 106-183 (437)
59 3p0j_A Tyrosyl-tRNA synthetase 92.7 0.19 6.6E-06 52.3 7.3 77 90-176 40-116 (690)
60 3i05_A Tryptophanyl-tRNA synth 92.7 0.38 1.3E-05 46.7 8.9 77 88-176 76-153 (395)
61 2cyc_A Tyrosyl-tRNA synthetase 92.0 0.27 9.3E-06 47.4 7.0 70 99-176 41-114 (375)
62 1jil_A Tyrrs, tyrosyl-tRNA syn 91.6 0.13 4.5E-06 50.4 4.3 71 99-175 40-113 (420)
63 2j5b_A Tyrosyl-tRNA synthetase 91.5 0.55 1.9E-05 44.8 8.4 75 91-176 42-116 (348)
64 3tze_A Tryptophanyl-tRNA synth 91.5 0.72 2.5E-05 44.9 9.3 77 88-176 99-176 (406)
65 3p0j_A Tyrosyl-tRNA synthetase 90.9 1.3 4.6E-05 45.9 11.1 68 100-175 390-458 (690)
66 2yy5_A Tryptophanyl-tRNA synth 90.6 0.75 2.6E-05 43.8 8.4 72 90-176 5-76 (348)
67 3n9i_A Tryptophanyl-tRNA synth 90.5 0.43 1.5E-05 45.5 6.6 73 89-176 15-87 (346)
68 2ts1_A Tyrosyl-tRNA synthetase 88.6 0.31 1.1E-05 47.7 4.1 67 99-170 38-107 (419)
69 1h3f_A Tyrosyl-tRNA synthetase 87.8 1 3.5E-05 44.1 7.2 76 91-174 38-117 (432)
70 1lko_A Rubrerythrin all-iron(I 87.2 0.37 1.3E-05 42.0 3.2 53 183-237 128-180 (191)
71 2yxn_A Tyrosyl-tRNA synthetase 85.7 0.61 2.1E-05 43.9 4.1 32 99-134 41-73 (322)
72 1y42_X Tyrosyl-tRNA synthetase 85.2 0.73 2.5E-05 44.7 4.5 32 99-134 72-104 (392)
73 2pid_A Tyrosyl-tRNA synthetase 84.7 0.83 2.8E-05 43.7 4.6 38 91-134 48-86 (356)
74 2jan_A Tyrosyl-tRNA synthetase 83.5 0.82 2.8E-05 44.9 4.1 32 99-134 40-72 (432)
75 3pwf_A Rubrerythrin; non heme 77.7 1.9 6.6E-05 36.7 4.0 51 182-237 112-162 (170)
76 3gdz_A Arginyl-tRNA synthetase 76.7 0.48 1.7E-05 37.4 -0.1 44 20-69 49-97 (109)
77 1yuz_A Nigerythrin; rubrythrin 71.5 2.1 7.2E-05 37.5 2.7 47 183-237 149-195 (202)
78 2kdx_A HYPA, hydrogenase/ureas 69.3 13 0.00045 29.3 6.8 79 156-237 8-99 (119)
79 3a43_A HYPD, hydrogenase nicke 68.7 10 0.00035 31.0 6.2 81 156-237 6-116 (139)
80 2yxb_A Coenzyme B12-dependent 59.5 54 0.0018 27.0 9.1 82 86-202 16-98 (161)
81 2jne_A Hypothetical protein YF 51.5 5.5 0.00019 30.7 1.4 44 199-242 21-75 (101)
82 3ezx_A MMCP 1, monomethylamine 47.9 1.2E+02 0.004 26.2 9.8 85 86-202 90-174 (215)
83 2lcq_A Putative toxin VAPC6; P 47.5 8.9 0.00031 31.9 2.3 32 208-241 130-161 (165)
84 3s2u_A UDP-N-acetylglucosamine 44.4 24 0.00084 32.8 5.0 36 89-134 3-38 (365)
85 3j20_Y 30S ribosomal protein S 38.2 7.3 0.00025 26.2 0.2 25 210-236 19-45 (50)
86 2gmg_A Hypothetical protein PF 32.6 48 0.0016 25.8 4.1 49 186-237 45-93 (105)
87 3b3d_A YTBE protein, putative 30.9 60 0.0021 29.7 5.3 47 158-204 126-174 (314)
88 4ayb_P DNA-directed RNA polyme 28.0 35 0.0012 22.6 2.2 31 210-240 3-35 (48)
89 1gh9_A 8.3 kDa protein (gene M 27.7 23 0.00078 25.6 1.4 37 209-247 3-39 (71)
90 3f7j_A YVGN protein; aldo-keto 26.8 70 0.0024 28.6 4.9 47 158-204 88-136 (276)
91 2jrp_A Putative cytoplasmic pr 26.8 23 0.00079 26.3 1.3 27 210-241 18-44 (81)
92 6rxn_A Rubredoxin; electron tr 26.6 38 0.0013 22.3 2.2 29 209-237 3-39 (46)
93 1yk4_A Rubredoxin, RD; electro 26.0 31 0.0011 23.3 1.7 28 210-237 2-44 (52)
94 5rub_A Rubisco (ribulose-1,5-b 25.7 20 0.00067 35.6 0.9 75 95-179 386-472 (490)
95 2kn9_A Rubredoxin; metalloprot 25.6 35 0.0012 25.3 2.1 30 208-237 25-69 (81)
96 3b3e_A YVGN protein; aldo-keto 25.6 74 0.0025 29.1 4.9 47 158-204 122-170 (310)
97 1s24_A Rubredoxin 2; electron 25.5 28 0.00095 26.2 1.5 30 208-237 33-77 (87)
98 4amg_A Snogd; transferase, pol 24.8 59 0.002 29.7 4.1 38 88-135 22-59 (400)
99 4gie_A Prostaglandin F synthas 23.4 88 0.003 28.1 4.9 45 160-204 97-143 (290)
100 1dx8_A Rubredoxin; electron tr 23.3 45 0.0015 23.9 2.2 30 208-237 5-49 (70)
101 1gve_A Aflatoxin B1 aldehyde r 23.1 1E+02 0.0035 28.1 5.3 47 158-204 85-134 (327)
102 3oti_A CALG3; calicheamicin, T 22.8 89 0.003 28.7 4.9 38 87-134 19-56 (398)
103 3rsc_A CALG2; TDP, enediyne, s 22.7 70 0.0024 29.5 4.2 41 85-135 17-57 (415)
104 3f2b_A DNA-directed DNA polyme 22.7 1E+02 0.0035 33.5 5.8 54 184-238 456-537 (1041)
105 2v3b_B Rubredoxin 2, rubredoxi 22.7 38 0.0013 23.1 1.7 28 210-237 3-45 (55)
106 1pz1_A GSP69, general stress p 22.6 1.1E+02 0.0038 28.0 5.5 47 158-204 101-150 (333)
107 3eau_A Voltage-gated potassium 22.5 95 0.0033 28.2 5.0 47 158-204 100-149 (327)
108 3dvk_B Voltage-dependent R-typ 22.1 93 0.0032 17.4 2.9 19 105-123 2-21 (23)
109 3up8_A Putative 2,5-diketo-D-g 21.5 1E+02 0.0035 28.0 5.0 47 158-204 104-153 (298)
110 1zvf_A 3-hydroxyanthranilate 3 21.4 16 0.00056 31.1 -0.5 17 207-223 121-137 (176)
111 1pyf_A IOLS protein; beta-alph 21.3 1.1E+02 0.0037 27.7 5.1 47 158-204 101-150 (312)
112 1twf_L ABC10-alpha, DNA-direct 21.3 49 0.0017 23.7 2.1 35 207-242 25-59 (70)
113 1yfu_A 3-hydroxyanthranilate-3 21.2 15 0.00053 31.2 -0.7 17 207-223 119-135 (174)
114 3v0s_A Perakine reductase; AKR 21.2 1E+02 0.0036 28.2 5.0 47 158-204 102-151 (337)
115 1qjc_A Phosphopantetheine aden 21.2 1.1E+02 0.0037 24.4 4.6 39 90-138 2-40 (158)
116 3o0k_A Aldo/keto reductase; ss 20.9 1.2E+02 0.0039 27.3 5.1 47 158-204 107-157 (283)
117 3n6q_A YGHZ aldo-keto reductas 20.8 1.1E+02 0.0037 28.2 5.0 47 158-204 114-163 (346)
118 2wzm_A Aldo-keto reductase; ox 20.7 1.3E+02 0.0046 26.8 5.5 47 158-204 92-142 (283)
119 2bp1_A Aflatoxin B1 aldehyde r 20.7 1.1E+02 0.0037 28.5 5.0 47 158-204 118-167 (360)
120 3lut_A Voltage-gated potassium 20.5 1.1E+02 0.0037 28.5 5.0 47 158-204 134-183 (367)
121 3n2t_A Putative oxidoreductase 20.4 1.1E+02 0.0038 28.2 5.0 47 158-204 122-171 (348)
122 1h7b_A Anaerobic ribonucleotid 20.4 57 0.0019 33.2 3.1 48 187-236 517-566 (605)
123 1e8j_A Rubredoxin; iron-sulfur 20.3 62 0.0021 21.7 2.3 28 210-237 3-45 (52)
124 3erp_A Putative oxidoreductase 20.2 1.1E+02 0.0038 28.3 5.0 47 158-204 135-184 (353)
No 1
>4dlp_A Aminoacyl-tRNA synthetase, class I:aminoacyl-tRNA synthetase, class IA:methionyl-tRNA...; structural genomics; 2.65A {Brucella melitensis biovar abortus 230ORGANISM_TAXID}
Probab=100.00 E-value=9.8e-61 Score=488.57 Aligned_cols=254 Identities=42% Similarity=0.707 Sum_probs=239.9
Q ss_pred CCCCEEEEccCCCCCCcCchhHHHHHHHHHHHHHHHHHcCCeEEEEcCCCCcChHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 046127 87 PADPFVLTTPLYYVNAPPHMGSAYTTIAADAIARFQRLLGKKVIFITGTDEHGEKIAAAAADGGSSPSEHCDVVSQAYKT 166 (345)
Q Consensus 87 ~~~~~~I~~~~PypnG~LHIGHar~~i~~DvlaR~lr~~G~~V~~v~G~D~~G~~I~~~A~~~g~~p~~~~~~~~~~~~~ 166 (345)
++++++||+|+|||||+|||||+|+++++|+++||+|++|++|.+++|+|+||++|+..|++.|++|+++++++.+.|++
T Consensus 23 ~~~~~~i~~p~pypng~lHiGH~r~~v~~D~laR~lr~~G~~V~~~~g~dd~g~ki~~~a~~~g~~~~~~~~~~~~~~~~ 102 (536)
T 4dlp_A 23 SREKYYITTAIAYPNGKPHIGHAYELIATDAMARFQRLNGMDVYFLTGTDEHGIKMLQSARKEGITPRDLADRNTSAFRR 102 (536)
T ss_dssp -CCEEEEEECCBCCSSCCCHHHHHHHHHHHHHHHHHHHTTCEEEEEEEECCCSHHHHHHHHHHTSCHHHHHHHHHHHHHH
T ss_pred CCCCEEEeCCCCCCCCCcCcchhHHHHHHHHHHHHHHhcCCcEEEecCcCCcchHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 35689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhcCcccCccccCCChhhHHHHHHHHHHHHhCCCeeecccCcccccCCCCccchhhhhcC---CcCCCCCCCceEeec
Q 046127 167 LWKDLDIAYDKFIRTTEPKHEAIVKEFYSSVLANGDIYKADYEGLYCVNCEEYKDEKELLEN---QCCPIHLKPCVARKE 243 (345)
Q Consensus 167 ~l~~lgI~~D~f~~T~~~~~~~~v~~~~~~L~~kG~iy~~~~~~~yc~~c~~~l~d~el~~~---~~c~~~~~pve~r~~ 243 (345)
+|++|||++|.|++|+++.|.+.++++|.+|.++|++|++++.+|||++|++++++.+++++ ..|..||.|++++.+
T Consensus 103 ~l~~lgi~~d~~~~t~~~~~~~~v~~~~~~L~~~G~iY~~~~~~~~~~~~~~~l~~~~~~~~~~g~~c~~~g~~~e~~~~ 182 (536)
T 4dlp_A 103 MAEVLNSSNDDYIRTSEERHYKASQAIWQAMVANGDIYKGGYAGWYSVRDEAYYGEEETEVRADGVRYGPQGTPVEWVEE 182 (536)
T ss_dssp HHHHTTCCCSEEEETTSHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTTTEEECGGGCEECTTSCEECTTSSBCEEEEE
T ss_pred HHHHcCCCCCcceeCCCHHHHHHHHHHHHHHHHCCCEEEeceeeeecCCcCcccCHHHhhcCCCCCcccCCCCcceEEec
Confidence 99999999999999999999999999999999999999999999999999999999998742 358999999999999
Q ss_pred cccccchhHhHHHHHHHHhcCCCcccChHHHHHHHHHHhcCCCCcccccCCCCCCcccCCCCCCcEEEecCchhHHHHhc
Q 046127 244 DNYFFALSKYQKLLEDTLTENPDFVQPSFRLNEVQGWIKSGLRDFSISRASVDWGIPVPNDNKQTIYVWFDALLGYISAL 323 (345)
Q Consensus 244 ~~~f~~l~~~~~~L~e~l~~~~~~~~P~~~~~~~~~wl~~gL~D~~ISR~~~~WGIpvP~~~~~~iyVWfdal~gYls~~ 323 (345)
+||||+|++|+++|.+++++.+.++.|+.+++++.+||+++|+||||||++.+||||||+++++++||||||+++|++++
T Consensus 183 ~~~f~~l~~~~~~l~~~~~~~~~~i~P~~~~~~~~~~l~~~l~D~~ISR~~~~WGipiP~~~~~v~yvWfda~~~y~s~~ 262 (536)
T 4dlp_A 183 ESYFFRLSAYQDKLLDLYENNPGFIMPAERRNEIVSFVKSGLKDLSISRTTFDWGIPVPGDEKHVMYVWVDALTNYITAL 262 (536)
T ss_dssp EEEEECGGGGHHHHHHHHHHCTTSEESHHHHHHHHHHHHTCCCCEECEEC--CCSCBCTTCTTSEECHHHHHHHHHHHTT
T ss_pred cceEEecHHHHHHHHHHHHhCCCccCcHHHHHHHHHHHhcCCCccCCccCCCcCCeeCCCCCCCceEEeeCCcHHHHHhc
Confidence 99999999999999999999877889999999999999999999999998789999999999999999999999999999
Q ss_pred CCCCCCCchhhhhhCcCCCCC
Q 046127 324 SEDRDQPSLRTAVSSGWPASL 344 (345)
Q Consensus 324 ~~~~~~~~~~~~~~~~w~~~~ 344 (345)
+++.+. +.+.+|||+++
T Consensus 263 ~~~~~~----~~~~~~~p~dv 279 (536)
T 4dlp_A 263 GYPDTT----DERWAYWPANA 279 (536)
T ss_dssp TTTCTT----SGGGGGCSCSE
T ss_pred CCCCCc----hHHHhhCCcce
Confidence 876553 56899999874
No 2
>3kfl_A Methionyl-tRNA synthetase; parasite, aminoacyl-tRNA synthetase, tRNA ligase metrs, methionine, translation, ATP-binding; HET: ME8; 2.00A {Leishmania major}
Probab=100.00 E-value=4.9e-61 Score=493.43 Aligned_cols=259 Identities=37% Similarity=0.714 Sum_probs=238.7
Q ss_pred CCCCCEEEEccCCCCCCcCchhHHHHHHHHHHHHHHHHHcCCeEEEEcCCCCcChHHHHHHHhCCCCHHHHHHHHHHHHH
Q 046127 86 EPADPFVLTTPLYYVNAPPHMGSAYTTIAADAIARFQRLLGKKVIFITGTDEHGEKIAAAAADGGSSPSEHCDVVSQAYK 165 (345)
Q Consensus 86 ~~~~~~~I~~~~PypnG~LHIGHar~~i~~DvlaR~lr~~G~~V~~v~G~D~~G~~I~~~A~~~g~~p~~~~~~~~~~~~ 165 (345)
+++++|+||+|+|||||+|||||+|+++++|+++||+|++|++|.+++|+|+||++|+.+|++.|++|+++++++.+.|+
T Consensus 23 ~~~~~~~i~~~~py~ng~lHiGH~r~~v~~D~laR~~r~~G~~V~~~~g~dd~G~ki~~~a~~~g~~p~~~~~~~~~~~~ 102 (564)
T 3kfl_A 23 KKQKVFFATTPIYYVNASPHIGHVYSTLIVDVLGRYHRVKGEEVFVMTGTDEHGQKVAEAAAKQGVSPMDFTTSVSSEFK 102 (564)
T ss_dssp -CCCCEEEEEEEEECSSCCCHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEECCSHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred cCCCCEEEeCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCcEEEecCcCCCCcHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcCcccCccccCCChhhHHHHHHHHHHHHhCCCeeecccCcccccCCCCccchhhhhcC-----CcCC---CCCCC
Q 046127 166 TLWKDLDIAYDKFIRTTEPKHEAIVKEFYSSVLANGDIYKADYEGLYCVNCEEYKDEKELLEN-----QCCP---IHLKP 237 (345)
Q Consensus 166 ~~l~~lgI~~D~f~~T~~~~~~~~v~~~~~~L~~kG~iy~~~~~~~yc~~c~~~l~d~el~~~-----~~c~---~~~~p 237 (345)
++|++|||++|.|++|+++.|.+.++++|.+|.++|+||++++.++||+.|++++++.++.+. ..|. .||+|
T Consensus 103 ~~~~~lgi~~D~~~~t~~~~~~~~v~~~~~~L~~~G~iy~~~~~~~y~~~~~~~l~~~~~~~~~~~~g~~c~~~~~~g~~ 182 (564)
T 3kfl_A 103 QCFQEMNYDMNYFIRTTNPTHEKLVQDIWKKLAAKGDIYLGKYEGWYSVSDESFLTAQNVADGVDRDGKPCKVSLESGHV 182 (564)
T ss_dssp HHHHHTTCCCSEEEETTSHHHHHHHHHHHHHHHHHTCEEEEEEEEEEETTTTEEECGGGEEEEECTTSCEEEEETTTSCB
T ss_pred HHHHHcCCCCCccccCCCHHHHHHHHHHHHHHHHCCCEEEeeeeEEecCCcCCCCCHHHhccCcCCCCCEeccccCCCCc
Confidence 999999999999999999999999999999999999999999999999999999999999742 3342 47999
Q ss_pred ceEeeccccccchhHhHHHHHHHHhcCCCcccChHHHHHHHHHHhcCCCCccccc---CCCCCCcccCCCCCCcEEEecC
Q 046127 238 CVARKEDNYFFALSKYQKLLEDTLTENPDFVQPSFRLNEVQGWIKSGLRDFSISR---ASVDWGIPVPNDNKQTIYVWFD 314 (345)
Q Consensus 238 ve~r~~~~~f~~l~~~~~~L~e~l~~~~~~~~P~~~~~~~~~wl~~gL~D~~ISR---~~~~WGIpvP~~~~~~iyVWfd 314 (345)
++++.++||||+|++|+++|.+++++++.+++|+.+++++.+||++||+|||||| ++.+||||||+++++|||||||
T Consensus 183 ~~~~~~~~~f~~l~~~~~~l~~~~~~~~~~i~P~~~~~~~~~wl~~gl~D~~ISR~~~~~~~WGipiP~~~~~v~yVWfD 262 (564)
T 3kfl_A 183 VTWVEEENYMFRLSAFRERLLKYFHDHPNCIVPEFRRREVIKTVEKGLFDLSISRKRESVMNWSIPVPGDERHCIYVWLD 262 (564)
T ss_dssp CEEEEEEEEEECGGGGHHHHHHHHHHCTTSEESHHHHHHHHHHHHHCCCCEECEEEGGGGTTCSCEETTEEEEEECHHHH
T ss_pred cEEEecceeEEEHHHHHHHHHHHHHhCCCccCCHHHHHHHHHHHhCCCCCccccCcCCCCCCCCeecCCCCCCEEEEecc
Confidence 9999999999999999999999999887789999999999999999999999999 3589999999999999999999
Q ss_pred chhHHHHhcCCCCC-CCc--hhhhh--hCcCCCCC
Q 046127 315 ALLGYISALSEDRD-QPS--LRTAV--SSGWPASL 344 (345)
Q Consensus 315 al~gYls~~~~~~~-~~~--~~~~~--~~~w~~~~ 344 (345)
|+++|+|+++++.+ .+. ..+.+ .+|||++|
T Consensus 263 a~~~y~s~~~~~~~~~~~~~~~~~~~~~~~wp~dv 297 (564)
T 3kfl_A 263 ALFNYYTGALTRVATDGTETLDEDHHALNRWPADV 297 (564)
T ss_dssp HHTHHHHHHHEEECTTSCEEECSSSTTTTCCSCSE
T ss_pred CcHHHHHHhCccccccccccchhcchhhhcCccce
Confidence 99999999988333 210 01237 89999874
No 3
>3u1f_A Methionyl-tRNA synthetase; aminoacyl-tRNA synthetase, AARS, metrs, parasite, protein-IN complex, rossmann-fold, translation; HET: 392; 2.20A {Trypanosoma brucei} PDB: 3u1e_A* 3u1g_A* 3u20_A* 4eg1_A 4eg3_A* 4eg6_A* 4eg8_A* 4eg5_A* 3tun_A* 3u1z_A* 4eg4_A* 4eg7_A* 4ega_A*
Probab=100.00 E-value=7.4e-61 Score=489.65 Aligned_cols=243 Identities=37% Similarity=0.682 Sum_probs=231.2
Q ss_pred CCCCCEEEEccCCCCCCcCchhHHHHHHHHHHHHHHHHHcCCeEEEEcCCCCcChHHHHHHHhCCCCHHHHHHHHHHHHH
Q 046127 86 EPADPFVLTTPLYYVNAPPHMGSAYTTIAADAIARFQRLLGKKVIFITGTDEHGEKIAAAAADGGSSPSEHCDVVSQAYK 165 (345)
Q Consensus 86 ~~~~~~~I~~~~PypnG~LHIGHar~~i~~DvlaR~lr~~G~~V~~v~G~D~~G~~I~~~A~~~g~~p~~~~~~~~~~~~ 165 (345)
.+.++|+||+|+|||||.|||||+++++++|+++||+||+||+|.+++|+|+||+||+.+|+++|++|+++|+++.+.|+
T Consensus 6 ~~~k~f~Ittp~pY~nG~lHiGHa~~~~~~Dii~Ry~r~~G~~v~~v~G~D~hG~~ie~~a~k~g~~~~e~~~~~~~~~~ 85 (542)
T 3u1f_A 6 KVEKVFFVTSPIYYVNAAPHIGHVYSTLITDVIGRYHRVKGERVFALTGTDEHGQKVAEAAKQKQVSPYDFTTAVAGEFK 85 (542)
T ss_dssp -CCCCEEEEEEEEECSSCCCHHHHHHHHHHHHHHHHHHHTTCCEEEEEEEECCSHHHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred CCCCCEEEeCCCCCCCCchhhHHHHHHHHHHHHHHHHHhcCCCccccCccCcChHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcCcccCccccCCChhhHHHHHHHHHHHHhCCCeeecccCcccccCCCCccchhhhhcC--------CcCCCCCCC
Q 046127 166 TLWKDLDIAYDKFIRTTEPKHEAIVKEFYSSVLANGDIYKADYEGLYCVNCEEYKDEKELLEN--------QCCPIHLKP 237 (345)
Q Consensus 166 ~~l~~lgI~~D~f~~T~~~~~~~~v~~~~~~L~~kG~iy~~~~~~~yc~~c~~~l~d~el~~~--------~~c~~~~~p 237 (345)
+++++|||++|.|++|+++.|.+.++++|.+|+++|+||++.+.++||++|++||+|.++++. +.|++||.+
T Consensus 86 ~~~~~lgi~~D~~~~T~~~~~~~~v~~~f~~L~~~G~iy~~~~~v~~~~~~~~~l~d~~v~~~~~~~g~~~~~~~~sg~~ 165 (542)
T 3u1f_A 86 KCFEQMDYSIDYFIRTTNEQHKAVVKELWTKLEQKGDIYLGRYEGWYSISDESFLTPQNITDGVDKDGNPCKVSLESGHV 165 (542)
T ss_dssp HHHHHHTCCCSEEEETTCHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTTTEEECGGGEEEEECTTSCEEEEETTTCCB
T ss_pred HHHHHhCCccCcCccCCCHHHHHHHHHHHHHHhhcCcEEecceeEEeeccCcccchhhhhhccccccCccccccCCCCCc
Confidence 999999999999999999999999999999999999999999999999999999999998751 348889999
Q ss_pred ceEeeccccccchhHhHHHHHHHHhcCCCcccChHHHHHHHHHHhcCCCCcccccCCC---CCCcccCCCCCCcEEEecC
Q 046127 238 CVARKEDNYFFALSKYQKLLEDTLTENPDFVQPSFRLNEVQGWIKSGLRDFSISRASV---DWGIPVPNDNKQTIYVWFD 314 (345)
Q Consensus 238 ve~r~~~~~f~~l~~~~~~L~e~l~~~~~~~~P~~~~~~~~~wl~~gL~D~~ISR~~~---~WGIpvP~~~~~~iyVWfd 314 (345)
++.+.++||||++++++++|.+++++.+.++.|+..++...+|+.++++||||||++. .||||||+++++++|||||
T Consensus 166 ve~~~~~~~f~~l~~~~~~l~~~~~~~~~~~~P~~~~~~~~~~~~~~l~Dw~ISRq~~~~~~WGipiP~~~~~~~~vw~d 245 (542)
T 3u1f_A 166 VTWVSEENYMFRLSAFRERLLEWYHANPGCIVPEFRRREVIRAVEKGLPDLSVSRARATLHNWAIPVPGNPDHXVYVWLD 245 (542)
T ss_dssp EEEEEEEEEEECGGGGHHHHHHHHHHCTTSEESHHHHHHHHHHHHHCCCCEECEEEGGGGTTCSCEETTEEEEEECHHHH
T ss_pred ceeeccccceecchhHHHHHHHHHhhcccccCCchhhHhHhhhhhccccccCccccccCcCCCCCccCCCcCeeeeeeec
Confidence 9999999999999999999999999988889999999999999999999999999842 3999999999999999999
Q ss_pred chhHHHHhcCCCCC
Q 046127 315 ALLGYISALSEDRD 328 (345)
Q Consensus 315 al~gYls~~~~~~~ 328 (345)
|++||+++++.+.+
T Consensus 246 a~~~~~~~~~~~~~ 259 (542)
T 3u1f_A 246 ALTNYLTGSRLRVD 259 (542)
T ss_dssp HHTHHHHHHTEEEC
T ss_pred cchhhhhhhhcccc
Confidence 99999999987654
No 4
>1rqg_A Methionyl-tRNA synthetase; translation, dimerization, ligase; 2.90A {Pyrococcus abyssi} SCOP: a.27.1.1 c.26.1.1 g.41.1.1
Probab=100.00 E-value=6.7e-60 Score=496.76 Aligned_cols=249 Identities=31% Similarity=0.555 Sum_probs=229.4
Q ss_pred CCEEEEccCCCCCCcCchhHHHH-HHHHHHHHHHHHHcCCeEEEEcCCCCcChHHHHHHHhCCCCHHHHHHHHHHHHHHH
Q 046127 89 DPFVLTTPLYYVNAPPHMGSAYT-TIAADAIARFQRLLGKKVIFITGTDEHGEKIAAAAADGGSSPSEHCDVVSQAYKTL 167 (345)
Q Consensus 89 ~~~~I~~~~PypnG~LHIGHar~-~i~~DvlaR~lr~~G~~V~~v~G~D~~G~~I~~~A~~~g~~p~~~~~~~~~~~~~~ 167 (345)
++|+||+|+|||||+|||||+++ ++++|+++||+||+||+|.|++|+|+||+||+.+|++.|++|+++++++.+.|+++
T Consensus 2 ~~~~itt~~Py~nG~lHiGHa~~~~i~~DiiaRy~rm~G~~V~~v~G~D~hG~pie~~A~k~G~~p~e~~~~~~~~~~~~ 81 (722)
T 1rqg_A 2 VRYMVTSALPYANGPIHAGHLAGAYLPADIFVRYLRLKGEDVVFICGTDEHGTPISFRALKEGRSPREIVDEFHEQIKIT 81 (722)
T ss_dssp CEEEEEECCCBTTSCCBHHHHHHHTHHHHHHHHHHHHTTCEEEEEEEEBCCSHHHHHHHHHHTCCHHHHHHHHHHHHHHH
T ss_pred CCEEEecCCCCCCCchhhchhhccHHHHHHHHHHHHhcCCceEecceeCCCCHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 57999999999999999999998 99999999999999999999999999999999999999999999999999999999
Q ss_pred HhhcCcccCccccCCChhhHHHHHHHHHHHHhCCCeeecccCcccccCCCCccchhhhhc--------------------
Q 046127 168 WKDLDIAYDKFIRTTEPKHEAIVKEFYSSVLANGDIYKADYEGLYCVNCEEYKDEKELLE-------------------- 227 (345)
Q Consensus 168 l~~lgI~~D~f~~T~~~~~~~~v~~~~~~L~~kG~iy~~~~~~~yc~~c~~~l~d~el~~-------------------- 227 (345)
|++|||++|.|++|+++.|.+.++++|.+|+++|+||++.+.++||+.|++||+|.++.+
T Consensus 82 ~~~lgis~D~~~rT~d~~~~~~v~~~f~~L~~kG~iY~~~~~v~y~~~~~tfl~d~~v~gtcP~c~~~~~~Gd~c~~~G~ 161 (722)
T 1rqg_A 82 FQRAKISFDFFGRTELPIHYKLSQEFFLKAYENGHLVKKVTKQAYCEHDKMFLPDRFVIGTCPYCGAEDQKGDQCEVCGR 161 (722)
T ss_dssp HHHHTCCCSEEEETTSHHHHHHHHHHHHHHHHTTCEEEEEEEEEEBTTTTBCCCGGGCCSBCSSSCCSCCCTTTCSSSCC
T ss_pred HHHhCCCCCCCeeCCCHHHHHHHHHHHHHHHHCCCEEecceeeeecCCCCcCcchhhcccccCccCCccCCcchhhhccc
Confidence 999999999999999999999999999999999999999999999999999999876531
Q ss_pred --------CCcCCCCCCCceEeeccccccchhHhHHHHHHHHhcCCCcccChHHHHHHHHHHhcCCCCcccccCCCCCCc
Q 046127 228 --------NQCCPIHLKPCVARKEDNYFFALSKYQKLLEDTLTENPDFVQPSFRLNEVQGWIKSGLRDFSISRASVDWGI 299 (345)
Q Consensus 228 --------~~~c~~~~~pve~r~~~~~f~~l~~~~~~L~e~l~~~~~~~~P~~~~~~~~~wl~~gL~D~~ISR~~~~WGI 299 (345)
+++|++||++++++.++||||+|++|+++|++++++.+ ||+.+++++.+||++||+||||||+ .+||+
T Consensus 162 ~l~~~~l~~p~~~r~g~~v~~~~~~qwF~~l~~~~~~l~~~~~~~~---wp~~~~~~~~~wl~~gl~dw~ISR~-~~WG~ 237 (722)
T 1rqg_A 162 PLTPEILINPRCAICGRPISFRDSAHYYIKMQDFAERLKRWIEKQP---WKPNVKNMVLSWIEEGLEERAITRD-LNWGI 237 (722)
T ss_dssp CCCTTSSBSCBCTTTCCBCEEEEEEEEEECGGGTHHHHHHHHHSSC---CCHHHHHHHHHHHTTCCCCEECEEC-CSSSC
T ss_pred ccChhhccCCcccCCCcEeEEEEeccEEEEhHHHHHHHHHHHHhCC---CCHHHHHHHHHHHHCCCcccceecc-ccCcc
Confidence 35788999999999999999999999999999999873 6888999999999889999999998 79999
Q ss_pred ccCC----CCCCcEEEecCchhHHHHhcCCCCCCCchhhhhhCcCC
Q 046127 300 PVPN----DNKQTIYVWFDALLGYISALSEDRDQPSLRTAVSSGWP 341 (345)
Q Consensus 300 pvP~----~~~~~iyVWfdal~gYls~~~~~~~~~~~~~~~~~~w~ 341 (345)
|||. .+++++||||||++||+++++++.+.....+.|.+|||
T Consensus 238 piP~~~~g~~~~~iyvW~da~i~y~~~~~~~~~~~g~~~~~~~~w~ 283 (722)
T 1rqg_A 238 PVPLDEEDMKGKVLYVWFEAPIGYISITIEHFKRIGKPNEWKKYWL 283 (722)
T ss_dssp BCSCCCSSSTTCEECHHHHGGGHHHHHHHHHHHHTTCTTTTHHHHB
T ss_pred ccCccccCCCCCEEEEEeccccchhhhHHHHHhhcCCchHHHhccC
Confidence 9995 78999999999999999988644321111245788998
No 5
>3h99_A Methionyl-tRNA synthetase; rossmann fold, aminoacyl-tRNA synthetase, ATP-binding, ligas binding, nucleotide-binding, protein biosynthesis; HET: CIT; 1.40A {Escherichia coli} PDB: 3h97_A* 3h9b_A* 1f4l_A 3h9c_A* 1pfv_A* 1pfu_A 1p7p_A* 1pfw_A* 1pfy_A* 1pg0_A* 1pg2_A* 1qqt_A 1mea_A 1med_A
Probab=100.00 E-value=5e-58 Score=470.79 Aligned_cols=257 Identities=25% Similarity=0.416 Sum_probs=230.3
Q ss_pred CCCCCCCEEEEccCCCCCCcCchhHHHHHHHHHHHHHHHHHcCCeEEEEcCCCCcChHHHHHHHhCCCCHHHHHHHHHHH
Q 046127 84 GTEPADPFVLTTPLYYVNAPPHMGSAYTTIAADAIARFQRLLGKKVIFITGTDEHGEKIAAAAADGGSSPSEHCDVVSQA 163 (345)
Q Consensus 84 ~~~~~~~~~I~~~~PypnG~LHIGHar~~i~~DvlaR~lr~~G~~V~~v~G~D~~G~~I~~~A~~~g~~p~~~~~~~~~~ 163 (345)
..+++++|+|++|+|||||+|||||+|+++++|+++||+|++|++|.+++|+|+||++|+..|++.|++++++++++.+.
T Consensus 13 ~~~~~~~~~v~~~~py~ng~lHiGH~r~~v~~D~laR~~r~~G~~V~~~~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~ 92 (560)
T 3h99_A 13 MTQVAKKILVTCASPYANGSIHLGHMLEHIQADVWVRYQRMRGHEVNFICADDAHGTPIMLKAQQLGITPEQMIGEMSQE 92 (560)
T ss_dssp ----CCEEEEEECCCBTTSCCBHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEBCCSHHHHHHHHHHTSCHHHHHHHHHHH
T ss_pred CCCCCCcEEEeCCCCCCCCCcchhhHHHHHHHHHHHHHHHHcCCeEEEeeeecCcCcHHHHHHHHhCCCHHHHHHHHHHH
Confidence 34678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhcCcccCccccCCChhhHHHHHHHHHHHHhCCCeeecccCcccccCCCCccchhhhhc----------------
Q 046127 164 YKTLWKDLDIAYDKFIRTTEPKHEAIVKEFYSSVLANGDIYKADYEGLYCVNCEEYKDEKELLE---------------- 227 (345)
Q Consensus 164 ~~~~l~~lgI~~D~f~~T~~~~~~~~v~~~~~~L~~kG~iy~~~~~~~yc~~c~~~l~d~el~~---------------- 227 (345)
|+++|++|||++|.|++|+++.|.+.++++|.+|.++|+||++++.+|||+.|+++|++.++.+
T Consensus 93 ~~~~~~~lgi~~d~~~~t~~~~~~~~v~~~~~~L~~~G~iy~~~~~~~~~~~~~~~l~~~~v~g~cp~c~~~~~~gd~ce 172 (560)
T 3h99_A 93 HQTDFAGFNISYDNYHSTHSEENRQLSELIYSRLKENGFIKNRTISQLYDPEKGMFLPDRFVKGTCPKCKSPDQYGDNCE 172 (560)
T ss_dssp HHHHHHHTTCCCSEEEESSSHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTTTEECCGGGEEEECTTTCCSSEETTBCT
T ss_pred HHHHHHHcCCCCCCceeCCCHHHHHHHHHHHHHHHHCCCEEEeeeeEeecCccCceecchhcCCCCCCCCCcccccchhh
Confidence 9999999999999999999999999999999999999999999999999999999999987642
Q ss_pred ------------CCcCCCCCCCceEeeccccccchhHhHHHHHHHHhcCCCcccChHHHHHHHHHHhcCCCCcccccCCC
Q 046127 228 ------------NQCCPIHLKPCVARKEDNYFFALSKYQKLLEDTLTENPDFVQPSFRLNEVQGWIKSGLRDFSISRASV 295 (345)
Q Consensus 228 ------------~~~c~~~~~pve~r~~~~~f~~l~~~~~~L~e~l~~~~~~~~P~~~~~~~~~wl~~gL~D~~ISR~~~ 295 (345)
++.|.+||.+++++.++||||+|++|+++|.+++++. + +|+..++.+.+||+++++||||||++.
T Consensus 173 ~cg~~~~~~~l~~~~~~~~g~~~~~~~~~~~f~~l~~~~~~l~~~~~~~--~-~~~~~~~~~~~~l~~~l~D~~IsR~~~ 249 (560)
T 3h99_A 173 VCGATYSPTELIEPKSVVSGATPVMRDSEHFFFDLPSFSEMLQAWTRSG--A-LQEQVANKMQEWFESGLQQWDISRDAP 249 (560)
T ss_dssp TTCCBCCGGGCEEEEETTTCCCCEEEEEEEEEECGGGGHHHHHHHHHTS--C-SCHHHHHHHHHHHHHCCCCEECEEESS
T ss_pred hccccCChhhhcCCccccCCCCceEEecceEEEEHHHHHHHHHHHHHhC--C-CCHHHHHHHHHHHhcCCCCCCccccCC
Confidence 1234455678999999999999999999999999885 4 466679999999998999999999865
Q ss_pred CCCcccCCCCCCcEEEecCchhHHHHhcCCCCCCCchhhhhhCcCCCC
Q 046127 296 DWGIPVPNDNKQTIYVWFDALLGYISALSEDRDQPSLRTAVSSGWPAS 343 (345)
Q Consensus 296 ~WGIpvP~~~~~~iyVWfdal~gYls~~~~~~~~~~~~~~~~~~w~~~ 343 (345)
+||||||++++++|||||||++||+++++.+.++......|.+|||++
T Consensus 250 ~WG~~iP~~~~~viyvW~da~~~y~s~~~~~~~~~~~~~~~~~~wp~~ 297 (560)
T 3h99_A 250 YFGFEIPNAPGKYFYVWLDAPIGLMGSFKNLCDKRGDSVSFDEYWKKD 297 (560)
T ss_dssp CSSCBCTTCTTEEECHHHHHHHHHHHHHHHHHHHHTCSSHHHHHHBTT
T ss_pred cCCeeCCCCCCceEEeCcccchhHHHHHHHHhhccCChhhHHHhCcCC
Confidence 899999999999999999999999999864432211125788999876
No 6
>2d5b_A Methionyl-tRNA synthetase; rossmann fold, class 1A AARS, isomerase, structural genomics, NPPSFA; 1.80A {Thermus thermophilus} SCOP: a.27.1.1 c.26.1.1 PDB: 1woy_A 1a8h_A 2d54_A
Probab=100.00 E-value=2.8e-57 Score=459.03 Aligned_cols=250 Identities=48% Similarity=0.880 Sum_probs=236.9
Q ss_pred CCCEEEEccCCCCCCcCchhHHHHHHHHHHHHHHHHHcCCeEEEEcCCCCcChHHHHHHHhCCCCHHHHHHHHHHHHHHH
Q 046127 88 ADPFVLTTPLYYVNAPPHMGSAYTTIAADAIARFQRLLGKKVIFITGTDEHGEKIAAAAADGGSSPSEHCDVVSQAYKTL 167 (345)
Q Consensus 88 ~~~~~I~~~~PypnG~LHIGHar~~i~~DvlaR~lr~~G~~V~~v~G~D~~G~~I~~~A~~~g~~p~~~~~~~~~~~~~~ 167 (345)
+++|+|++|+|||||+|||||+|+++++|+++||+|++|++|.+++|+|+||++|+.+|++.|++++++++++.+.|+++
T Consensus 2 ~~~~~i~~p~py~~g~lHiGH~r~~~~~D~~~R~~r~~G~~V~~~~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~ 81 (500)
T 2d5b_A 2 EKVFYVTTPIYYVNAEPHLGHAYTTVVADFLARWHRLDGYRTFFLTGTDEHGETVYRAAQAAGEDPKAFVDRVSGRFKRA 81 (500)
T ss_dssp CCEEEEECCCEETTSCCCHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEECCSHHHHHHHHHHTSCHHHHHHHHHHHHHHH
T ss_pred CCcEEEecCCCCCCCCcchhhHHHHHHHHHHHHHHHcCCCceeeecccCCchHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 36799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhcCcccCccccCCChhhHHHHHHHHHHHHhCCCeeecccCcccccCCCCccchhhhhcCCcCCCCCCCceEeeccccc
Q 046127 168 WKDLDIAYDKFIRTTEPKHEAIVKEFYSSVLANGDIYKADYEGLYCVNCEEYKDEKELLENQCCPIHLKPCVARKEDNYF 247 (345)
Q Consensus 168 l~~lgI~~D~f~~T~~~~~~~~v~~~~~~L~~kG~iy~~~~~~~yc~~c~~~l~d~el~~~~~c~~~~~pve~r~~~~~f 247 (345)
|++|||++|.+++|+++.|.+.++++|.+|.++|+||++++.++||+.|++++++.++.+ +.|++|+.|++.+.++|||
T Consensus 82 ~~~lgi~~d~~~~t~~~~~~~~~~~~~~~L~~~G~iy~~~~~~~~~~~~~~~~~~~~l~~-g~c~~~~~~v~~~~~~~wf 160 (500)
T 2d5b_A 82 WDLLGIAYDDFIRTTEERHKKVVQLVLKKVYEAGDIYYGEYEGLYCVSCERFYTEKELVE-GLCPIHGRPVERRKEGNYF 160 (500)
T ss_dssp HHHTTCCCSEEEETTSHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTTTEECCTTTSBT-TBCTTTCSBCEEEEEEEEE
T ss_pred HHHhCCcCCCCcccCCHHHHHHHHHHHHHHHHCCCEEecceEEecCCCcCcccCchhccC-CcCCCCCCeeeEEecCceE
Confidence 999999999999999999999999999999999999999999999999999999999875 7899999999999999999
Q ss_pred cchhHhHHHHHHHHhcCCCcccChHHHHHHHHHHhcCCCCccccc--CCCCCCcccCCCCCCcEEEecCchhHHHHhcCC
Q 046127 248 FALSKYQKLLEDTLTENPDFVQPSFRLNEVQGWIKSGLRDFSISR--ASVDWGIPVPNDNKQTIYVWFDALLGYISALSE 325 (345)
Q Consensus 248 ~~l~~~~~~L~e~l~~~~~~~~P~~~~~~~~~wl~~gL~D~~ISR--~~~~WGIpvP~~~~~~iyVWfdal~gYls~~~~ 325 (345)
|++++|++.|.++++++++++.|+..++.+.+||+++++|||||| ++.+||+|+|.++++++||||||+++|++++++
T Consensus 161 ~~l~~~~~~l~~~~~~~~~~~~p~~~~~~~~~~l~~~l~Dw~iSRp~~~~~WG~piP~~~~~v~~vWfds~~~y~~~~g~ 240 (500)
T 2d5b_A 161 FRMEKYRPWLQEYIQENPDLIRPEGYRNEVLAMLAEPIGDLSISRPKSRVPWGIPLPWDENHVTFVWFDALLNYVSALDY 240 (500)
T ss_dssp ECGGGGHHHHHHHHHTCTTSEESHHHHHHHHHHHTSCCCCEECEEETTTCCSSCEETTEEEEEECHHHHHHTHHHHTTTT
T ss_pred EEcHHHHHHHHHHHHhCCCeeCCHHHHHHHHHHHhcCCCCeecccccccccCccccCCCCCCeeEEccccchhhHHHcCC
Confidence 999999999999999877778899999999999998999999999 667899999999999999999999999999887
Q ss_pred CCCCCchhhhhhCcCCCC
Q 046127 326 DRDQPSLRTAVSSGWPAS 343 (345)
Q Consensus 326 ~~~~~~~~~~~~~~w~~~ 343 (345)
+.+. + +.++||.|
T Consensus 241 ~~~~----~-~~~~~p~d 253 (500)
T 2d5b_A 241 PEGE----A-YRTFWPHA 253 (500)
T ss_dssp TTCH----H-HHHHGGGE
T ss_pred CCCc----h-HHHcCCCe
Confidence 6431 2 77788876
No 7
>2x1l_A Methionyl-tRNA synthetase; nucleotide-binding, protein biosynthesis, ligase, aminoacyl- synthetase; HET: ADN CXS; 2.30A {Mycobacterium smegmatis} PDB: 2x1m_A*
Probab=100.00 E-value=3.2e-57 Score=461.28 Aligned_cols=256 Identities=38% Similarity=0.692 Sum_probs=238.3
Q ss_pred CCCCCEEEEccCCCCCCcCchhHHHHHHHHHHHHHHHHHcCCeEEEEcCCCCcChHHHHHHHhCCCCHHHHHHHHHHHHH
Q 046127 86 EPADPFVLTTPLYYVNAPPHMGSAYTTIAADAIARFQRLLGKKVIFITGTDEHGEKIAAAAADGGSSPSEHCDVVSQAYK 165 (345)
Q Consensus 86 ~~~~~~~I~~~~PypnG~LHIGHar~~i~~DvlaR~lr~~G~~V~~v~G~D~~G~~I~~~A~~~g~~p~~~~~~~~~~~~ 165 (345)
++++.++|++|+|||||+|||||+|+++++|+++||+|++|++|.+++|+|+||++|+.+|++.|++++++++++.+.|+
T Consensus 9 ~~~~~~~i~t~~P~~ng~lHiGHa~~~i~~D~l~R~~r~~G~~V~~~~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~ 88 (524)
T 2x1l_A 9 GGSEPFYITTAIAYPNGVPHIGHAYEYIATDAIARFKRLDGYDVRYLTGTDVHGQKMAETAAKEGIPAAELARRNSDVFQ 88 (524)
T ss_dssp --CCEEEEEECCBCCSSCCCHHHHHHHHHHHHHHHHHHHTTCEEEEEEEECCCSHHHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred CCCCCEEEeeCCCCCCCCcccchhHHHHHHHHHHHHHHhcCCceeeeCCcCcccHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 45688999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcCcccCccccCCChhhHHHHHHHHHHHHhCCCeeecccCcccccCCCCccchhhhhcC---CcCC-CCCCCceEe
Q 046127 166 TLWKDLDIAYDKFIRTTEPKHEAIVKEFYSSVLANGDIYKADYEGLYCVNCEEYKDEKELLEN---QCCP-IHLKPCVAR 241 (345)
Q Consensus 166 ~~l~~lgI~~D~f~~T~~~~~~~~v~~~~~~L~~kG~iy~~~~~~~yc~~c~~~l~d~el~~~---~~c~-~~~~pve~r 241 (345)
+++++|||++|.|++|+++.|.+.++++|.+|+++|+||++++.+|||+.|++++++.++... ..|+ +||.|++.+
T Consensus 89 ~~~~~lgi~~d~~~~t~~~~~~~~v~~~~~~L~~~G~iY~~~~~v~~~~~~~t~l~~~ev~~g~~G~~c~~~~g~~v~~~ 168 (524)
T 2x1l_A 89 RLQEKLNISFDRFIRTSDADHYEASKAIWKRMADAGDIYLDAYKGWYSIRDERFFTENETTEQPDGTRIATETGAPVTWT 168 (524)
T ss_dssp HHHHHTTCCCSEEEETTSHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTTTEEECGGGEEECTTSCEEETTTCCBEEEE
T ss_pred HHHHHcCCcCCCCeecCCHHHHHHHHHHHHHHHHCCCEEeeeeeeeccCccCccccHHHhccCCCCCccccccCCcceEE
Confidence 999999999999999999999999999999999999999999999999999999999998642 2588 999999999
Q ss_pred eccccccchhHhHHHHHHHHhcCCCcccChHHHHHHHHHHhcCCCCcccccCCCCCCcccCCCCCCcEEEecCchhHHHH
Q 046127 242 KEDNYFFALSKYQKLLEDTLTENPDFVQPSFRLNEVQGWIKSGLRDFSISRASVDWGIPVPNDNKQTIYVWFDALLGYIS 321 (345)
Q Consensus 242 ~~~~~f~~l~~~~~~L~e~l~~~~~~~~P~~~~~~~~~wl~~gL~D~~ISR~~~~WGIpvP~~~~~~iyVWfdal~gYls 321 (345)
.++||||++++|+++|.+++++++.++.|+..++.+.+|+.++++||||||++.+||+|+|.++++++|||||++++|++
T Consensus 169 ~~~qwF~~l~~~~~~l~~~~~~~~~~i~p~~~~~~~~~~~~~~l~Dw~iSRqr~~WG~~iP~~~~~~~yvWfds~~~~~~ 248 (524)
T 2x1l_A 169 EEQTYFFRLSAYTDRLLALYEEHPEFIGPDARRNEIVSFVSGGLKDLSISRTTFDWGVPVPDHPDHVMYVWVDALTNYLT 248 (524)
T ss_dssp EEEEEEECGGGSHHHHHHHHHHCGGGEESHHHHHHHHHHHTTCCCCEECEESSCCSSCEETTEEEEEECHHHHHHTHHHH
T ss_pred ecCCeEeeHHHHHHHHHHHHHhCCCeeCCHHHHHHHHHHHHcCCcccceECCCCCcCccCCCCCCCEEEEecCCchHHHH
Confidence 99999999999999999999876556889999999999998899999999997789999998889999999999999999
Q ss_pred hcCCCCCCCchhhhhhCcCCCCC
Q 046127 322 ALSEDRDQPSLRTAVSSGWPASL 344 (345)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~w~~~~ 344 (345)
+++++.+. +..+.++||.|+
T Consensus 249 ~~g~p~~~---~~~~~~~~p~di 268 (524)
T 2x1l_A 249 GVGFPDTE---SESFRRYWPADL 268 (524)
T ss_dssp TTTTTCTT---SHHHHHHCSCSE
T ss_pred HcCCCCCc---hHHHHhhCCCeE
Confidence 99886542 246888999874
No 8
>2csx_A Methionyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase/RNA complex; 2.70A {Aquifex aeolicus} PDB: 2ct8_A*
Probab=100.00 E-value=3.4e-56 Score=450.98 Aligned_cols=236 Identities=54% Similarity=0.964 Sum_probs=196.5
Q ss_pred CCCEEEEccCCCCCCcCchhHHHHHHHHHHHHHHHHHcCCeEEEEcCCCCcChHHHHHHHhCCCCHHHHHHHHHHHHHHH
Q 046127 88 ADPFVLTTPLYYVNAPPHMGSAYTTIAADAIARFQRLLGKKVIFITGTDEHGEKIAAAAADGGSSPSEHCDVVSQAYKTL 167 (345)
Q Consensus 88 ~~~~~I~~~~PypnG~LHIGHar~~i~~DvlaR~lr~~G~~V~~v~G~D~~G~~I~~~A~~~g~~p~~~~~~~~~~~~~~ 167 (345)
+++++|++|+|||||+|||||+|+++++|+++||+|++|++|.+++|+|+||++|+.+|++.|++|+++++++.+.|+++
T Consensus 4 ~~~~~i~~p~py~ng~lHiGH~~~~~~~D~~~R~~r~~G~~V~~~~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~ 83 (497)
T 2csx_A 4 MKKFYVTTPIYYVNDVPHLGHAYTTIAADTIARYYRLRDYDVFFLTGTDEHGLKIQKKAEELGISPKELVDRNAERFKKL 83 (497)
T ss_dssp SCEEEEEEEEEETTSCCCHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEECCSHHHHTHHHHSSSCHHHHHHHHHHHHHHH
T ss_pred CCcEEEecCCCCCCCccchhhHHHHHHHHHHHHHHHhcCCceeeecccCCCcHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhcCcccCccccCCChhhHHHHHHHHHHHHhCCCeeecccCcccccCCCCccchhhhhcCCcCCCCCCCceEeeccccc
Q 046127 168 WKDLDIAYDKFIRTTEPKHEAIVKEFYSSVLANGDIYKADYEGLYCVNCEEYKDEKELLENQCCPIHLKPCVARKEDNYF 247 (345)
Q Consensus 168 l~~lgI~~D~f~~T~~~~~~~~v~~~~~~L~~kG~iy~~~~~~~yc~~c~~~l~d~el~~~~~c~~~~~pve~r~~~~~f 247 (345)
|++|||++|.+++|+++.|.+.++++|.+|+++|+||++++.++||+.|++++++.++.+.+.|++||.+++.+.++|||
T Consensus 84 ~~~lgi~~d~~~~t~~~~~~~~~~~~~~~L~~~G~iY~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~wf 163 (497)
T 2csx_A 84 WEFLKIEYTKFIRTTDPYHVKFVQKVFEECYKRGDIYLGEYEGWYCVGCEEFKSEAELAEDHTCPIHQKKCEYIKEPSYF 163 (497)
T ss_dssp HHHTTCCCSEEEETTSHHHHHHHHHHHHHHHHTTCEEEEEC---------------------------------CCEEEE
T ss_pred HHHhCCcCCCCccCCCHHHHHHHHHHHHHHHHCCCEEecceeeccCcccCeEccHHHhccCCCCCCCCCCCeEEecCceE
Confidence 99999999999999999999999999999999999999999999999999999999997657899999999999999999
Q ss_pred cchhHhHHHHHHHHhcCCCcccChHHHHHHHHHHhcCCCCccccc--CCCCCCcccCCCCCCcEEEecCchhHHHHhc
Q 046127 248 FALSKYQKLLEDTLTENPDFVQPSFRLNEVQGWIKSGLRDFSISR--ASVDWGIPVPNDNKQTIYVWFDALLGYISAL 323 (345)
Q Consensus 248 ~~l~~~~~~L~e~l~~~~~~~~P~~~~~~~~~wl~~gL~D~~ISR--~~~~WGIpvP~~~~~~iyVWfdal~gYls~~ 323 (345)
|+|++|+++|.+++++.+.++.|+..++.+.+|++++++|||||| ++.+||+|+|.++++++||||||+++|+|++
T Consensus 164 ~~l~~~~~~l~~~~~~~~~~~~p~~~~~~~~~~l~~~~~Dw~isR~~~~~~WG~~iP~~~~~~i~vW~ds~~~~~s~~ 241 (497)
T 2csx_A 164 FRLSKYQDKLLELYEKNPEFIQPDYRRNEIISFVKQGLKDLSVTRPRSRVKWGIPVPFDPEHTIYVWFDALFNYISAL 241 (497)
T ss_dssp ECTTSSHHHHHHHHHHCTTSBCSHHHHHHHHHHHHHCCCCEECEEETTTCCSSEEETTEEEEEECSHHHHHTHHHHTT
T ss_pred EEcHHHHHHHHHHHHhCCCeeCcHHHHHHHHHHHhcCCccccccccCCCCCCceecCCCCCceEEEecccchhhcccC
Confidence 999999999999999887778899889999999988999999999 6578999999888999999999999999988
No 9
>1ile_A Ilers, isoleucyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken structural genomics/proteom initiative, RSGI, structural genomics; 2.50A {Thermus thermophilus} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1jzq_A* 1jzs_A*
Probab=100.00 E-value=9.9e-52 Score=440.61 Aligned_cols=251 Identities=18% Similarity=0.282 Sum_probs=224.0
Q ss_pred CCCCEEEEccCCCCCCcCchhHHHHHHHHHHHHHHHHHcCCeEEEEcCCCCcChHHHHHHHhC-CCCH------------
Q 046127 87 PADPFVLTTPLYYVNAPPHMGSAYTTIAADAIARFQRLLGKKVIFITGTDEHGEKIAAAAADG-GSSP------------ 153 (345)
Q Consensus 87 ~~~~~~I~~~~PypnG~LHIGHar~~i~~DvlaR~lr~~G~~V~~v~G~D~~G~~I~~~A~~~-g~~p------------ 153 (345)
++++|+|+.|||||||.|||||+++++++|+++||+||+|++|.+++|+|+||+||+.+|++. |.++
T Consensus 36 ~~~~f~i~~~pPy~nG~lHiGH~~~~~~~D~i~R~~rm~G~~v~~~~G~D~~Glpie~~a~k~l~~~~~~~~~~~g~~~f 115 (821)
T 1ile_A 36 GGPRYTVYEGPPTANGLPHVGHAQARSYKDLFPRYKTMRGYYAPRRAGWDTHGLPVELEVEKKLGLKSKREIEAYGIERF 115 (821)
T ss_dssp TSCBCCBCCCCCCTTSCCCTTHHHHHHHHHHHHHHHHHTTCBCCCEEEECCCHHHHHHHHHHHTTCCSHHHHHHHCHHHH
T ss_pred CCCcEEEecCCCCCCCCCchhhhHhHHHHHHHHHHHHhcCCcccccccccCCCchHHHHHHHHhcccccchHhhcCHHHH
Confidence 568999999999999999999999999999999999999999999999999999999999984 8763
Q ss_pred ----HHHHHHHHHHHHHHHhhcC--cccCccccCCChhhHHHHHHHHHHHHhCCCeeecccCcccccCCCCccchhhhhc
Q 046127 154 ----SEHCDVVSQAYKTLWKDLD--IAYDKFIRTTEPKHEAIVKEFYSSVLANGDIYKADYEGLYCVNCEEYKDEKELLE 227 (345)
Q Consensus 154 ----~~~~~~~~~~~~~~l~~lg--I~~D~f~~T~~~~~~~~v~~~~~~L~~kG~iy~~~~~~~yc~~c~~~l~d~el~~ 227 (345)
+++++++.+.++++|++|| +++|++++|+++.|++.++++|.+|+++|+||++.++++||+.|+++|+|.|+.+
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~~lg~~~dwd~~~~T~d~~~~~~v~~~f~~L~~~Gliy~~~~~v~wcp~~~t~Lad~ev~~ 195 (821)
T 1ile_A 116 NQACRESVFTYEKEWEAFTERIAYWVDLEDAYATLEPTYIESIWWSLKNLFDRGLLYRDHKVVPYCPRCGTPLSSHEVAL 195 (821)
T ss_dssp HHHHHHHTTTTHHHHTTHHHHTTCCCEEEEEEETTSHHHHHHHHHHHHHHHHTTCEEEECCEEEEETTTTEECCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCeEccCCCeEECCHHHHHHHHHHHHHHHHcCCeeecCcceEecCCCCCcccHhHhhc
Confidence 4678888999999999999 6677999999999999999999999999999999999999999999999988831
Q ss_pred --------------------------------------------------------------------------------
Q 046127 228 -------------------------------------------------------------------------------- 227 (345)
Q Consensus 228 -------------------------------------------------------------------------------- 227 (345)
T Consensus 196 G~~~~~~~~~~v~f~~~~~~~~~~~~~~l~v~TTrP~Tl~g~~av~v~p~~~y~~~~~~~~~~i~a~~~~~~~~~~~~~~ 275 (821)
T 1ile_A 196 GYKEIQDPSVYVRFPLKEPKKLGLEKASLLIWTTTPWTLPGNVAAAVHPEYTYAAFQVGDEALILEEGLGRKLLGEGTQV 275 (821)
T ss_dssp TEEEEEEEEEEEEEEBSSGGGGTCSSEEEEEEESCGGGGGGCCCEEECTTSCEEEEEETTEEEEEETTHHHHHTCTTSCE
T ss_pred CcccccCceEEEEEEecCCcccCCCCCEEEEEcCCChhhhhcEEEEECCCCceeEEEcCCcEEEehHHHHHHHHhhCcEE
Confidence
Q ss_pred --------------------------------------------------------------------------------
Q 046127 228 -------------------------------------------------------------------------------- 227 (345)
Q Consensus 228 -------------------------------------------------------------------------------- 227 (345)
T Consensus 276 ~~~~~G~~l~g~~~~~p~~~~~~~~~pi~~~~~V~~~~GTG~V~~~Pah~~~D~~~~~~~~l~~~~~id~~G~~~~~~~~ 355 (821)
T 1ile_A 276 LKTFPGKALEGLPYTPPYPQALEKGYFVVLADYVSQEDGTGIVHQAPAFGAEDLETARVYGLPLLKTVDEEGKLLVEPFK 355 (821)
T ss_dssp EEEECHHHHTTCBBCCSSCCCCSSCSBEEECTTCCSSSSCSCEECCTTSCHHHHHHHHHTTCCCCCCBCTTSBBCSGGGT
T ss_pred EEEechHHhcCCEEEcCCcccCCCEEEEEecCcCccCCCCcceEecCCCCHHHHHHHHHcCCCcceeECCCCcCcccCcC
Confidence
Q ss_pred ------------------------------CCcCCCCCCCceEeeccccccchhHhHHHHHHHHhcCCCcccChHH-HHH
Q 046127 228 ------------------------------NQCCPIHLKPCVARKEDNYFFALSKYQKLLEDTLTENPDFVQPSFR-LNE 276 (345)
Q Consensus 228 ------------------------------~~~c~~~~~pve~r~~~~~f~~l~~~~~~L~e~l~~~~~~~~P~~~-~~~ 276 (345)
.++|++|++|++++.++||||+++++++++++++++. .+.|+.. .+.
T Consensus 356 G~~~~~a~~~i~~~L~~~g~~~~~~~~~h~~p~c~r~~~~~~~~~~~qWF~~~~~~~~~~~~~~~~~--~~~P~~~~~~~ 433 (821)
T 1ile_A 356 GLYFREANRAILRDLRGRGLLFKEESYLHSYPHCWRCSTPLMYYATESWFIKNTLFKDELIRNNQEI--HWVPPHIKEGR 433 (821)
T ss_dssp TCBHHHHHHHHHHHHHHTTCEEEEEEEEEEEEBCSSSCCBCEEEECCEEEECGGGGHHHHHHHHHHS--EESSGGGTTTT
T ss_pred CCCHHHHHHHHHHHHHhCCCeeeeecccccCCEecCCCCEEEEEecchhhhchHHHHHHHHHHhcCe--EEECchhhHhH
Confidence 1359999999999999999999999999999999886 4688876 357
Q ss_pred HHHHHhcCCCCcccccCCCCCCcccCC----CC-----------------------------------------------
Q 046127 277 VQGWIKSGLRDFSISRASVDWGIPVPN----DN----------------------------------------------- 305 (345)
Q Consensus 277 ~~~wl~~gL~D~~ISR~~~~WGIpvP~----~~----------------------------------------------- 305 (345)
+.+||+ +|+||||||| .+||+|||. +.
T Consensus 434 ~~~~l~-~l~DW~ISRq-r~WG~pIP~~~~~~~~~~~vi~~~~~l~~~~~~~~~~~~~l~~~~~d~~~~~~~~g~~~~r~ 511 (821)
T 1ile_A 434 YGEWLK-NLVDWALSRN-RYWGTPLPIWVCQACGKEEAIGSFQELKARATKPLPEPFDPHRPYVDQVELACACGGTMRRV 511 (821)
T ss_dssp THHHHH-TCCCEECCBC-CSSSCBCCEEEESSSSCCEECCSHHHHHHHBSSCCCSSCCCSHHHHTTCEEECTTSSEEEEC
T ss_pred HHHHHh-CCchheeccc-CCCCCeeeEEEecCCCcEEeeCcHHHHHhhccccccchhhhccccccccccCCCCCCchhhc
Confidence 899996 7999999999 589999992 10
Q ss_pred CCcEEEecCchhHHHHhcCCCCCCCchhhhhhCcCCCCC
Q 046127 306 KQTIYVWFDALLGYISALSEDRDQPSLRTAVSSGWPASL 344 (345)
Q Consensus 306 ~~~iyVWfdal~gYls~~~~~~~~~~~~~~~~~~w~~~~ 344 (345)
.+|+|||||+.+.|++.++++.+. .+.|..+||+|+
T Consensus 512 ~dvld~WfdS~~~~~~~~~~p~~~---~~~f~~~~P~dl 547 (821)
T 1ile_A 512 PYVIDVWYDSGAMPFASLHYPFEH---EEVFRESFPADF 547 (821)
T ss_dssp SCBCCHHHHHHHHHHHTTTTTTSC---HHHHHHHSSBSB
T ss_pred ccccceecccccchHhhcCCCccc---hHHHhhcCCccc
Confidence 158999999999999988876432 356888999875
No 10
>1gax_A Valrs, valyl-tRNA synthetase; protein-RNA complex, rossmann fold, coiled coil, riken structural genomics/proteomics initiative, RSGI; HET: VAA; 2.90A {Thermus thermophilus} SCOP: a.2.7.3 a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1ivs_A* 1iyw_A
Probab=100.00 E-value=2.4e-50 Score=429.98 Aligned_cols=264 Identities=21% Similarity=0.316 Sum_probs=225.7
Q ss_pred ccccCCCCCCC-CCCCCCEEEEccCCCCCCcCchhHHHHHHHHHHHHHHHHHcCCeEEEEcCCCCcChHHHHHHHh----
Q 046127 74 CSYATNTDKSG-TEPADPFVLTTPLYYVNAPPHMGSAYTTIAADAIARFQRLLGKKVIFITGTDEHGEKIAAAAAD---- 148 (345)
Q Consensus 74 ~~~~~~~~~~~-~~~~~~~~I~~~~PypnG~LHIGHar~~i~~DvlaR~lr~~G~~V~~v~G~D~~G~~I~~~A~~---- 148 (345)
.|.. +.|... ..++++|+|++|||||||.|||||+++++++|+++||+||+|++|.+++|+|+||++++.++++
T Consensus 19 ~W~~-~~f~~~~~~~~~~f~i~~ppPy~nG~lHiGHa~~~~l~Dii~Ry~rm~G~~vl~~~G~D~~Glp~e~~vek~l~~ 97 (862)
T 1gax_A 19 KWAK-NPFVANPKSGKPPFVIFMPPPNVTGSLHMGHALDNSLQDALIRYKRMRGFEAVWLPGTDHAGIATQVVVERLLLK 97 (862)
T ss_dssp HHHH-SCCCCCTTCCSCEEEEECCCCBSSSCCCHHHHHHHHHHHHHHHHHHTTTSEEEEECEEBCCTHHHHHHHHTTTTT
T ss_pred HHHh-CCCccCcCCCCCcEEEEcCCCCCCCCcchhhhHHHHHHHHHHHHHHhCCCccccccccCCCCcHHHHHHHHHHHH
Confidence 3555 566432 3457899999999999999999999999999999999999999999999999999999999874
Q ss_pred CCCCHH------------HHHHHHHHHHHHHHhhcCcccC--ccccCCChhhHHHHHHHHHHHHhCCCeeecccCccccc
Q 046127 149 GGSSPS------------EHCDVVSQAYKTLWKDLDIAYD--KFIRTTEPKHEAIVKEFYSSVLANGDIYKADYEGLYCV 214 (345)
Q Consensus 149 ~g~~p~------------~~~~~~~~~~~~~l~~lgI~~D--~f~~T~~~~~~~~v~~~~~~L~~kG~iy~~~~~~~yc~ 214 (345)
.|++++ ++++++.+.|+++|++||+++| +.+.|+++.|.+.++++|.+|+++|+||++.+.++||+
T Consensus 98 ~g~~~~~~~~~~f~~~~~~~~~~~~~~~~~q~~rlG~s~Dw~r~~~T~d~~~~~~v~~~F~~L~~kGliYrg~~~v~wcp 177 (862)
T 1gax_A 98 EGKTRHDLGREKFLERVWQWKEESGGTILKQLKRLGASADWSREAFTMDEKRSRAVRYAFSRYYHEGLAYRAPRLVNWCP 177 (862)
T ss_dssp TTSCCSCCCTTHHHHHHHHHHHHHHHHHHHHHHHTTCCCCGGGCEETTSHHHHHHHHHHHHHHHTTSSEEEECCEEEEET
T ss_pred cCCChHHcCHHHHHHHHHHHHHHHHHHHHHHHHHhCccccCCCCcccCCHHHHHHHHHHHHHHHHCCCEEecccccccCC
Confidence 465543 6789999999999999999998 34459999999999999999999999999999999999
Q ss_pred CCCCccchhhhh--------------------------------------------------------------------
Q 046127 215 NCEEYKDEKELL-------------------------------------------------------------------- 226 (345)
Q Consensus 215 ~c~~~l~d~el~-------------------------------------------------------------------- 226 (345)
.|+++|+|.|+.
T Consensus 178 ~~~T~Lsd~EV~~~e~~g~~~~v~f~~~~~~~l~v~TTrPeTl~g~~avav~P~~~ry~~l~G~~~~~P~~~~~ipii~~ 257 (862)
T 1gax_A 178 RCETTLSDLEVETEPTPGKLYTLRYEVEGGGFIEIATVRPETVFADQAIAVHPEDERYRHLLGKRARIPLTEVWIPILAD 257 (862)
T ss_dssp TTTEEECGGGEEECCEEEEEEEEECCCSSSCCCEEEESCSGGGTTCCCEEECSSCCTTCSCTTCCCBCTTCCCBCCEEEC
T ss_pred CcCccccccccccccccceEEEEEEEecCCCEEEEEeCCccccccceEEEECCCccHHHHHcCCEEECCCCCCeeeEEec
Confidence 999999987642
Q ss_pred -------------------------------------------------c------------------------------
Q 046127 227 -------------------------------------------------E------------------------------ 227 (345)
Q Consensus 227 -------------------------------------------------~------------------------------ 227 (345)
+
T Consensus 258 ~~V~~~~GTG~V~~~Pahd~~D~~~~~~~~L~~~~~id~~G~~~~~~~~g~~~Gl~~~~a~~~iv~~L~~~g~l~~~~~~ 337 (862)
T 1gax_A 258 PAVEKDFGTGALKVTPAHDPLDYEIGERHGLKPVSVINLEGRMEGERVPEALRGLDRFEARRKAVELFREAGHLVKEEDY 337 (862)
T ss_dssp TTCCTTSSSSEEECCGGGCHHHHHHHHHTTCCCCCSBCTTSBBCSSSSCTTTSSSBSSHHHHHHHHHHHTTTCEEEEEEE
T ss_pred cccccCCCCcceEecCCCCchHHHHHHHcCCCccceeCCCCccccccCCcccCCcCHHHHHHHHHHHHHhCCCeeeeccc
Confidence 0
Q ss_pred ---CCcCCCCCCCceEeeccccccchhHhHHHHHHHHhcCCCcccChHHHHHHHHHHhcCCCCcccccCCCCCCcccCC-
Q 046127 228 ---NQCCPIHLKPCVARKEDNYFFALSKYQKLLEDTLTENPDFVQPSFRLNEVQGWIKSGLRDFSISRASVDWGIPVPN- 303 (345)
Q Consensus 228 ---~~~c~~~~~pve~r~~~~~f~~l~~~~~~L~e~l~~~~~~~~P~~~~~~~~~wl~~gL~D~~ISR~~~~WGIpvP~- 303 (345)
.++|++|++|++.+.++|||++++++++++.++++++...+.|+..++.+.+||+ +|+||||||| .+||+|||.
T Consensus 338 ~h~~p~c~R~~~~i~~~~~~qWFv~~~~~~~~~l~~v~~~~~~~~P~~~~~~~~~wl~-~l~DW~ISRq-r~WG~pIP~w 415 (862)
T 1gax_A 338 TIALATCSRCGTPIEYAIFPQWWLRMRPLAEEVLKGLRRGDIAFVPERWKKVNMDWLE-NVKDWNISRQ-LWWGHQIPAW 415 (862)
T ss_dssp EECCEEETTTCSBCCEEECCEEEECHHHHHHHHHHHHHHTCCEESSSHHHHHHHHHHH-TCCCCCCBCC-CSSSCCCCCE
T ss_pred cccCCeecCCCCeEEEEecceEEEEhHHHHHHHHHHHHcCCceEcCHHHHHHHHHHHh-cccceeEecc-cCCCcccCce
Confidence 1358999999999999999999999999999999765556899999999999996 6999999999 699999994
Q ss_pred --CCCCcEEE------------------------------ecCchhHHHHhcCCCCCCCchhhhhhCcCCCCC
Q 046127 304 --DNKQTIYV------------------------------WFDALLGYISALSEDRDQPSLRTAVSSGWPASL 344 (345)
Q Consensus 304 --~~~~~iyV------------------------------Wfdal~gYls~~~~~~~~~~~~~~~~~~w~~~~ 344 (345)
++++++|| |||+.+.|++.++++.+. +++..|||+|+
T Consensus 416 ~~~~~~~i~v~~~~~l~~~~~~~~~~g~~~~~r~~DvlDtWfdS~~~~~~~~~~p~~~----~~~~~~~P~d~ 484 (862)
T 1gax_A 416 YCEDCQAVNVPRPERYLEDPTSCEACGSPRLKRDEDVFDTWFSSALWPLSTLGWPEET----EDLKAFYPGDV 484 (862)
T ss_dssp EETTTCCEECCCGGGTTCCCCSCTTTCCSCEEECCCCBCHHHHHTSCTTGGGTTTSCC----HHHHHSCSBSC
T ss_pred ecCCCCEEEEeccccccccchhhhhcCchheecCCcccceeeccCCcchhhccCCCch----HHHHhhCCceE
Confidence 23344554 556667788877776442 57888999885
No 11
>1ffy_A Isoleucyl-tRNA synthetase; protein-RNA complex, metal IONS, editing tRNA synthetase, double-sieve, ligase/RNA, mupiroci; HET: MRC; 2.20A {Staphylococcus aureus} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1qu2_A* 1qu3_A*
Probab=100.00 E-value=3.9e-49 Score=423.53 Aligned_cols=233 Identities=22% Similarity=0.332 Sum_probs=212.9
Q ss_pred CCCCCEEEEccCCCCCCcCchhHHHHHHHHHHHHHHHHHcCCeEEEEcCCCCcChHHHHHHHhCCCCH------------
Q 046127 86 EPADPFVLTTPLYYVNAPPHMGSAYTTIAADAIARFQRLLGKKVIFITGTDEHGEKIAAAAADGGSSP------------ 153 (345)
Q Consensus 86 ~~~~~~~I~~~~PypnG~LHIGHar~~i~~DvlaR~lr~~G~~V~~v~G~D~~G~~I~~~A~~~g~~p------------ 153 (345)
.++++|+|++|||||||.|||||+++++++|+++||+||+|++|.+++|||+||+||+.+|++.|+++
T Consensus 45 ~~~~~f~i~~~pPY~nG~lHiGHa~n~~~~Dii~Ry~rm~G~~v~~~~GwD~hGlpiE~~a~k~G~~~~~~~~~~f~~~~ 124 (917)
T 1ffy_A 45 KGNETFILHDGPPYANGNLHMGHALNKILKDFIVRYKTMQGFYAPYVPGWDTHGLPIEQALTKKGVDRKKMSTAEFREKC 124 (917)
T ss_dssp TTSCBCCEECCCCBSSSCCCHHHHHHHHHHHHHHHHHHTTTCBCCCCCEEBCCSHHHHHHHHHHTCCSTTTCHHHHHHHH
T ss_pred cCCCceeeCCCCCCCCCcchHHHHHHHHHHHHHHHHHHhCCCCCCCcccCchhhHHHHHHHHHcCCCchhCCHHHHHHHH
Confidence 45789999999999999999999999999999999999999999999999999999999999998875
Q ss_pred HHHHHHHHHHHHHHHhhcCccc--CccccCCChhhHHHHHHHHHHHHhCCCeeecccCcccccCCCCccchhhhh-----
Q 046127 154 SEHCDVVSQAYKTLWKDLDIAY--DKFIRTTEPKHEAIVKEFYSSVLANGDIYKADYEGLYCVNCEEYKDEKELL----- 226 (345)
Q Consensus 154 ~~~~~~~~~~~~~~l~~lgI~~--D~f~~T~~~~~~~~v~~~~~~L~~kG~iy~~~~~~~yc~~c~~~l~d~el~----- 226 (345)
+++++++.+.++++|++||+++ |++++|+++.|.+.++++|.+|+++|+||++.++++||+.|+++|++.|+.
T Consensus 125 ~~~~~~~~~~~~~~~~rlG~~~Dwd~~~~T~d~~~~~~v~~~F~~l~~kGliYr~~~~v~wcp~~~T~Lae~eVey~d~~ 204 (917)
T 1ffy_A 125 KEFALEQIELQKKDFRRLGVRGDFNDPYITLKPEYEAAQIRIFGEMADKGLIYKGKKPVYWSPSSESSLAEAEIEYHDKR 204 (917)
T ss_dssp HHHHHHHHHHHHHHHHTTTCCSCTTSCEETTSHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTTTEECCGGGEEEEEEE
T ss_pred HHHHHHHHHHHHHHHHHhCeEEccCCCeEcCCHHHHHHHHHHHHHHHHcCCeEecccceeccCCCCcCcchhhhhccccc
Confidence 5788999999999999999975 589999999999999999999999999999999999999999999987763
Q ss_pred -----------------------------------------------------c--------------------------
Q 046127 227 -----------------------------------------------------E-------------------------- 227 (345)
Q Consensus 227 -----------------------------------------------------~-------------------------- 227 (345)
+
T Consensus 205 ~~~~~v~f~~~~~~g~~~~~~~~~i~TTrP~Tl~~~~av~v~p~~~Y~~v~~~~~~~i~a~~~~~~~~~~~~~~~~~~~~ 284 (917)
T 1ffy_A 205 SASIYVAFNVKDDKGVVDADAKFIIWTTTPWTIPSNVAITVHPELKYGQYNVNGEKYIIAEALSDAVAEALDWDKASIKL 284 (917)
T ss_dssp EEEEECCBCCCSSTTGGGTTCCBCCEESCGGGSSCCBCCCCCTTCCCCCCCTTTTCCCCCHHHHHHHHTTTTCCSSCCCC
T ss_pred CceEEEEEEecccccccCCCCeEEEEeCCcchhhhceEEEECCCCceEEEEeCCceeehHHHHHHHHHHhcCcccceeee
Confidence 0
Q ss_pred --------------------------------------------------------------------------------
Q 046127 228 -------------------------------------------------------------------------------- 227 (345)
Q Consensus 228 -------------------------------------------------------------------------------- 227 (345)
T Consensus 285 ~~~~~G~~l~g~~~~~P~~~~~~pvi~~~~V~~~~GTG~V~~~Pah~~~D~~~~~~~~L~~~~~vd~~G~~~~~~~~~~G 364 (917)
T 1ffy_A 285 EKEYTGKELEWVVAQHPFLDRESLVINGDHVTTDAGTGCVHTAPGHGEDDYIVGQQYELPVISPIDDKGVFTEEGGQFEG 364 (917)
T ss_dssp CCCCCTTTCTTCCCBCCTTCCSBCCCCCCSSCCSSSCSCCCBCTTSCSHHHHTTTSSSCCCCCCCCSSSCCCTTCSSCSS
T ss_pred eeeeecccccCCEEECCCCCCeeeEEeccccccCCCCceeEeCCCCCHHHHHHHHHcCCCeeeeECCCceeCCcccccCC
Confidence
Q ss_pred -----------------------------CCcCCCCCCCceEeeccccccchhHhHHHHHHHHhcCCCcccChHHHHHHH
Q 046127 228 -----------------------------NQCCPIHLKPCVARKEDNYFFALSKYQKLLEDTLTENPDFVQPSFRLNEVQ 278 (345)
Q Consensus 228 -----------------------------~~~c~~~~~pve~r~~~~~f~~l~~~~~~L~e~l~~~~~~~~P~~~~~~~~ 278 (345)
.++|++|++|+++|.++|||++++++++++++.+++. .+.|+..++++.
T Consensus 365 ~~v~~A~~~Ii~~L~~~g~l~~~~~~~hs~p~c~R~~~pv~~r~t~QWFi~~~~lr~~~l~~i~~~--~~~P~~~~~r~~ 442 (917)
T 1ffy_A 365 MFYDKANKAVTDLLTEKGALLKLDFITHSYPHDWRTKKPVIFRATPQWFASISKVRQDILDAIENT--NFKVNWGKTRIY 442 (917)
T ss_dssp SCSSHHHHTTGGGSSHHHHCCCCEEEEEEEEEETTTCCBCEEEEEEEEEECHHHHHHHHHHHHHTS--EESSHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHhCCCccccccccccCCEecCCCCEEEEEeccceEeeHHHHHHHHHHHHhcC--cccCHHHHHHHH
Confidence 1358899999999999999999999999999999975 468999999999
Q ss_pred HHHhcCCCCcccccCCCCCCcccCC---CCCC------------------cEEEecCchhHHHHh
Q 046127 279 GWIKSGLRDFSISRASVDWGIPVPN---DNKQ------------------TIYVWFDALLGYISA 322 (345)
Q Consensus 279 ~wl~~gL~D~~ISR~~~~WGIpvP~---~~~~------------------~iyVWfdal~gYls~ 322 (345)
+||++ ++||||||| .+||+|||. ++++ .+|+|||+..+|+..
T Consensus 443 ~~l~~-~~DW~ISRq-r~WG~PIP~~~~~~g~~~~~~~~~~~i~~~~~~~g~~~W~~~~~~~~~~ 505 (917)
T 1ffy_A 443 NMVRD-RGEWVISRQ-RVWGVPLPVFYAENGEIIMTKETVNHVADLFAEHGSNIWFEREAKDLLP 505 (917)
T ss_dssp HHHHH-CCCEECEES-CSSSCBCCCEECTTSCEECCHHHHHHHHHHHHHHCTHHHHHSCHHHHSS
T ss_pred HHHhc-Cccceeecc-CCcCcccceeeCCCCCEecCHHHHHHHHHHhhhcCCcccccCCHHHhcc
Confidence 99985 999999999 599999995 3354 348999999998874
No 12
>2v0c_A Aminoacyl-tRNA synthetase; ligase, nucleotide-binding, protein biosynthesis; HET: LMS ANZ; 1.85A {Thermus thermophilus} PDB: 1h3n_A* 1obc_A* 1obh_A* 2bte_A* 2byt_A 2v0g_A*
Probab=100.00 E-value=1.6e-46 Score=401.74 Aligned_cols=203 Identities=20% Similarity=0.266 Sum_probs=180.9
Q ss_pred cccCCCCCCC--CCCCCCEEEEccCCCCCCcCchhHHHHHHHHHHHHHHHHHcCCeEEEEcCCCCcChHHHHHHHhCCCC
Q 046127 75 SYATNTDKSG--TEPADPFVLTTPLYYVNAPPHMGSAYTTIAADAIARFQRLLGKKVIFITGTDEHGEKIAAAAADGGSS 152 (345)
Q Consensus 75 ~~~~~~~~~~--~~~~~~~~I~~~~PypnG~LHIGHar~~i~~DvlaR~lr~~G~~V~~v~G~D~~G~~I~~~A~~~g~~ 152 (345)
|...+.|... ..++++|+|+++||||||.|||||+++++++|+++||+||+||+|.+++|+|+||+||+.+|++.|++
T Consensus 17 W~~~~~f~~~~~~~~~~k~~v~~~~Py~nG~lHiGHa~~~~~~Dvl~Ry~rm~G~~V~~~~G~D~~Glpie~~a~k~g~~ 96 (878)
T 2v0c_A 17 WEEKGFMKAKDLPGGRGKQYVLVMFPYPSGDLHMGHLKNYTMGDVLARFRRMQGYEVLHPMGWDAFGLPAENAALKFGVH 96 (878)
T ss_dssp HHHHTTTCCCSCCC---EEEEEECCCCCSSCCBHHHHHHHHHHHHHHHHHHHHTCEEECCCCBCCSSHHHHHHHHHTTCC
T ss_pred HHHcCCcccCcccCCCCCEEEECCCCCCCCCcchhhhHHHHHHHHHHHHHHhcCCceEeecccCcccHHHHHHHHHcCCC
Confidence 4444555322 23467899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhcCcccC--ccccCCChhhHHHHHHHHHHHHhCCCeeecccCcccccCCCCccchhhhhcCCc
Q 046127 153 PSEHCDVVSQAYKTLWKDLDIAYD--KFIRTTEPKHEAIVKEFYSSVLANGDIYKADYEGLYCVNCEEYKDEKELLENQC 230 (345)
Q Consensus 153 p~~~~~~~~~~~~~~l~~lgI~~D--~f~~T~~~~~~~~v~~~~~~L~~kG~iy~~~~~~~yc~~c~~~l~d~el~~~~~ 230 (345)
|.++++++.+.|+++|++|||++| ++++|+++.|.+.++++|.+|+++|+||++.+.++||+.|+++|++.|+++ +.
T Consensus 97 ~~~~~~~~~~~~~~~~~~LGi~~Dw~~~~~T~d~~~~~~v~~~f~~L~~kGliY~~~~~v~w~p~~~t~La~~ev~~-g~ 175 (878)
T 2v0c_A 97 PKDWTYANIRQAKESLRLMGILYDWDREVTTCEPEYYRWNQWIFLKMWEKGLAYRAKGLVNWCPKCQTVLANEQVVE-GR 175 (878)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCCCGGGCCBTTSHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTTTEEECGGGEET-TE
T ss_pred HHHHHHHHHHHHHHHHHHhCCccCcCCCeecCCHHHHHHHHHHHHHHHHCCCEEEcceeEEEeCCCCCCcCHHHHhc-CC
Confidence 999999999999999999999998 788999999999999999999999999999999999999999999999974 78
Q ss_pred CCC-CCCCceEeeccccccchhHhHHHHHHHHhcCCCcccChHHHHHHHHHH
Q 046127 231 CPI-HLKPCVARKEDNYFFALSKYQKLLEDTLTENPDFVQPSFRLNEVQGWI 281 (345)
Q Consensus 231 c~~-~~~pve~r~~~~~f~~l~~~~~~L~e~l~~~~~~~~P~~~~~~~~~wl 281 (345)
|++ |+.+++.++++||||+|++|+++|.++++..+ ||+.+++++.+||
T Consensus 176 ~~~~~~~~~~~~~~~~~f~~l~~~~~~L~~~l~~~~---~p~~~~~~~~~wi 224 (878)
T 2v0c_A 176 CWRHEDTPVEKRELEQWYLRITAYAERLLKDLEGLN---WPEKVKAMQRAWI 224 (878)
T ss_dssp ESSCTTCBCEEEEEEEEEECGGGGHHHHHHTTTTCB---SCHHHHHHHHHHH
T ss_pred CcccCCCceEEEecceeeEecchhHHHHHHHhhhcC---CCHHHHHHHHHHh
Confidence 999 99999999999999999999999999886542 4555555555544
No 13
>1wkb_A Leucyl-tRNA synthetase; leucine, aminoacyl-tRNA, editing, amino acid, aminoacylation, trnaLeu, structural genomics; 2.05A {Pyrococcus horikoshii}
Probab=100.00 E-value=1.5e-45 Score=392.69 Aligned_cols=137 Identities=21% Similarity=0.239 Sum_probs=128.1
Q ss_pred CCCEEEEccCCCCCCcCchhHHHHHHHHHHHHHHHHHcCCeEEEEcCCCCcChHHHHHHHhC------------------
Q 046127 88 ADPFVLTTPLYYVNAPPHMGSAYTTIAADAIARFQRLLGKKVIFITGTDEHGEKIAAAAADG------------------ 149 (345)
Q Consensus 88 ~~~~~I~~~~PypnG~LHIGHar~~i~~DvlaR~lr~~G~~V~~v~G~D~~G~~I~~~A~~~------------------ 149 (345)
+++|+|++|||||||+|||||+++++++|+++||+||+||+|.+++|+|+||+||+..|++.
T Consensus 33 ~~~~~i~~~~Py~nG~lHiGH~~~~~~~D~i~R~~rm~G~~V~~~~G~D~~G~pie~~a~~~~~~~~~~~~~~~~~~g~~ 112 (810)
T 1wkb_A 33 EKKFYITVAFPYLSGHLHVGHARTYTIPDVIARFKRMQGYNVLFPMAWHITGSPIVGIAERIKNRDPKTIWIYRDVYKVP 112 (810)
T ss_dssp GGEEEEEECCCBTTSCCBHHHHHHHHHHHHHHHHHHHHTCEEECCCCBBCCBSHHHHHHHHHHTTCHHHHHHHHHTSCCC
T ss_pred CCcEEEEeCCCCCCCCCccccchhHHHHHHHHHHHHcCCCccCcCCccCCCCChHHHHHHHhcccCchHHHHHHHHhCCC
Confidence 67899999999999999999999999999999999999999999999999999999887631
Q ss_pred ------CCCHHHHHHHHHHHHHHHHhhcCcccC--ccccCCC--hhhHHHHHHHHHHHHhCCCeeecccCcccccCCCCc
Q 046127 150 ------GSSPSEHCDVVSQAYKTLWKDLDIAYD--KFIRTTE--PKHEAIVKEFYSSVLANGDIYKADYEGLYCVNCEEY 219 (345)
Q Consensus 150 ------g~~p~~~~~~~~~~~~~~l~~lgI~~D--~f~~T~~--~~~~~~v~~~~~~L~~kG~iy~~~~~~~yc~~c~~~ 219 (345)
+..++++++++.+.|+++|++|||++| .++.|++ +.|.+.++++|.+|+++|+||++.++++||+.|+++
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lgi~~Dw~~~~~T~d~~~~~~~~v~~~f~~L~~~Gliy~~~~~v~~~~~~~t~ 192 (810)
T 1wkb_A 113 EEILWTFEDPINIVKYFMKAAKETFIRAGFSVDWSREFYTTSLFPPFSKFIEWQFWKLKEKGYIVKGAHRVRWDPVVGTP 192 (810)
T ss_dssp HHHHHGGGSHHHHHHHHHHHHHHHHHHTTCCCCGGGCCBCSTTSHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTTTEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCeEEecCCceEecCCchHHHHHHHHHHHHHHHCCCEEECCeeeeccCCcCCC
Confidence 246888999999999999999999998 6778999 999999999999999999999999999999999998
Q ss_pred cchhh
Q 046127 220 KDEKE 224 (345)
Q Consensus 220 l~d~e 224 (345)
|++.|
T Consensus 193 La~~e 197 (810)
T 1wkb_A 193 LGDHD 197 (810)
T ss_dssp CCTTC
T ss_pred ccHHH
Confidence 87764
No 14
>1wz2_A Leucyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiativ structural genomics, ligase-RNA complex; 3.21A {Pyrococcus horikoshii}
Probab=100.00 E-value=1.6e-44 Score=390.52 Aligned_cols=136 Identities=21% Similarity=0.250 Sum_probs=127.1
Q ss_pred CCEEEEccCCCCCCcCchhHHHHHHHHHHHHHHHHHcCCeEEEEcCCCCcChHHHHHHHhC---------------C---
Q 046127 89 DPFVLTTPLYYVNAPPHMGSAYTTIAADAIARFQRLLGKKVIFITGTDEHGEKIAAAAADG---------------G--- 150 (345)
Q Consensus 89 ~~~~I~~~~PypnG~LHIGHar~~i~~DvlaR~lr~~G~~V~~v~G~D~~G~~I~~~A~~~---------------g--- 150 (345)
++|+|+.|||||||.|||||+++++++|+++||+||+|++|.+++|||+||+||+..|++. |
T Consensus 34 ~kf~i~~~pPy~nG~lHiGH~~~~~~~Dii~Ry~rm~G~~Vl~~~GwD~~GlPie~~a~~~~~~~~~~~~~~~~~~gi~~ 113 (967)
T 1wz2_A 34 KKFYITVAFPYLSGHLHVGHARTYTIPDVIARFKRMQGYNVLFPMAWHITGSPIVGIAERIKNRDPKTIWIYRDVYKVPE 113 (967)
T ss_dssp GCCBEEECCCBCSSCCBHHHHHHHHHHHHHHHHHHHTTCCCBCCCCBBCCSSHHHHHHHHHHTTCHHHHHHHHTTSCCCH
T ss_pred CcEEEEeCCCCCCCCcchhhhHHHHHHHHHHHHHHcCCCccCCCCcCCCCCcHHHHHHHHhhccchhHHHHHHHhcCCCH
Confidence 7899999999999999999999999999999999999999999999999999999887642 3
Q ss_pred ------CCHHHHHHHHHHHHHHHHhhcCcccC--ccccCCC--hhhHHHHHHHHHHHHhCCCeeecccCcccccCCCCcc
Q 046127 151 ------SSPSEHCDVVSQAYKTLWKDLDIAYD--KFIRTTE--PKHEAIVKEFYSSVLANGDIYKADYEGLYCVNCEEYK 220 (345)
Q Consensus 151 ------~~p~~~~~~~~~~~~~~l~~lgI~~D--~f~~T~~--~~~~~~v~~~~~~L~~kG~iy~~~~~~~yc~~c~~~l 220 (345)
.+++++++++.+.++++|++||+++| +.+.|++ +.|.+.++++|.+|+++|+||++.++++|||.|+|+|
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~Dw~r~~~T~d~np~y~~~v~~~F~~L~~kGliyr~~~~v~wcp~~~T~L 193 (967)
T 1wz2_A 114 EILWTFEDPINIVKYFMKAAKETFIRAGFSVDWSREFYTTSLFPPFSKFIEWQFWKLKEKGYIVKGAHRVRWDPVVGTPL 193 (967)
T ss_dssp HHHHGGGSHHHHHHHHHHHHHHHHHTTTCCCCTTSCCBCSTTSHHHHHHHHHHHHHTTTTTCEEECCCCCEECTTTSCBC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCceEecCCCeEECCCChhHHHHHHHHHHHHHHCCCEEEeceEecccCCCCCCc
Confidence 36788999999999999999999988 6788999 9999999999999999999999999999999999988
Q ss_pred chhh
Q 046127 221 DEKE 224 (345)
Q Consensus 221 ~d~e 224 (345)
+|+|
T Consensus 194 ad~E 197 (967)
T 1wz2_A 194 GDHD 197 (967)
T ss_dssp CSSS
T ss_pred chhh
Confidence 7653
No 15
>4arc_A Leucine--tRNA ligase; ligase-RNA complex, nucleotide-binding, protein biosynthesis I aminoacyl-tRNA synthetase, ATP-binding; 2.00A {Escherichia coli} PDB: 4aq7_A 4ari_A* 4as1_A*
Probab=100.00 E-value=9.1e-43 Score=371.24 Aligned_cols=206 Identities=22% Similarity=0.314 Sum_probs=164.7
Q ss_pred ccccCCCCCCC-CCCCCCEEEEccCCCCCCcCchhHHHHHHHHHHHHHHHHHcCCeEEEEcCCCCcChHHHHHHHhCCCC
Q 046127 74 CSYATNTDKSG-TEPADPFVLTTPLYYVNAPPHMGSAYTTIAADAIARFQRLLGKKVIFITGTDEHGEKIAAAAADGGSS 152 (345)
Q Consensus 74 ~~~~~~~~~~~-~~~~~~~~I~~~~PypnG~LHIGHar~~i~~DvlaR~lr~~G~~V~~v~G~D~~G~~I~~~A~~~g~~ 152 (345)
.|...+.|... ..++++|+|++++|||||+|||||+++++++|+++||+||+||+|.+++|+|+||+||+..|++.|++
T Consensus 37 ~W~~~~~f~~~~~~~~~~~~v~~~~PypnG~lHiGHa~~~~~~DvlaRy~rm~G~~V~~~~G~D~~Glpie~~a~~~g~~ 116 (880)
T 4arc_A 37 HWDEKRTFEVTEDESKEKYYCLSMLPYPSGRLHMGHVRNYTIGDVIARYQRMLGKNVLQPIGWDAFGLPAEGAAVKNNTA 116 (880)
T ss_dssp HHHHTTTTCCCCCTTSCEEEEEECCCCCCSSCCHHHHHHHHHHHHHHHHHHHTTCEEECCCEECCCSTHHHHHHHHTTSC
T ss_pred HHHhcCCcccCCcCCCCCEEEEcCCCCCCCCcchhhhHHHHHHHHHHHHHHHcCCceEEecCccccCcHHHHHHHHcCCC
Confidence 35666666432 34678999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhcCcccC--ccccCCChhhHHHHHHHHHHHHhCCCeeecccCcccccCCCCccchhhhhcCCc
Q 046127 153 PSEHCDVVSQAYKTLWKDLDIAYD--KFIRTTEPKHEAIVKEFYSSVLANGDIYKADYEGLYCVNCEEYKDEKELLENQC 230 (345)
Q Consensus 153 p~~~~~~~~~~~~~~l~~lgI~~D--~f~~T~~~~~~~~v~~~~~~L~~kG~iy~~~~~~~yc~~c~~~l~d~el~~~~~ 230 (345)
|+++++++.+.|+++|++||+++| ++++|+++.|.+.++++|.+|+++|+||++++.++||+.|+++|++.|+++ ++
T Consensus 117 p~~~~~~~i~~~~~~l~~LGis~Dw~~~~~T~d~~~~~~v~~~f~~L~ekGliY~~~~~v~wcp~~~t~La~~ev~~-g~ 195 (880)
T 4arc_A 117 PAPWTYDNIAYMKNQLKMLGFGYDWSRELATCTPEYYRWEQKFFTELYKKGLVYKKTSAVNWCPNDQTVLANEQVID-GC 195 (880)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCCCGGGCEETTSHHHHHHHHHHHHHHHHTTCEEEEEECC--------------------
T ss_pred HHHHHHHHHHHHHHHHHHhCCCcCCCCCEEcCCHHHHHHHHHHHHHHHHCCCEEEeceeEeecCCcCCEecchhhhc-Cc
Confidence 999999999999999999999998 889999999999999999999999999999999999999999999999985 89
Q ss_pred CCCCCCCceEeeccccccchhHhHHHHHHHHhcCCCcccChHHHHHHHHHHh
Q 046127 231 CPIHLKPCVARKEDNYFFALSKYQKLLEDTLTENPDFVQPSFRLNEVQGWIK 282 (345)
Q Consensus 231 c~~~~~pve~r~~~~~f~~l~~~~~~L~e~l~~~~~~~~P~~~~~~~~~wl~ 282 (345)
|++||.+||.++++||||+|++|+++|+++++..+ -||+.++++++|||.
T Consensus 196 ~~~~g~~ve~~~~~~~f~~i~~y~~~Ll~~l~~~~--~wp~~v~~~~~~wig 245 (880)
T 4arc_A 196 CWRCDTKVERKEIPQWFIKITAYADELLNDLDKLD--HWPDTVKTMQRNWIG 245 (880)
T ss_dssp -----------CEEEEEECGGGGHHHHHHHGGGCT--TSCHHHHHHHHHHHC
T ss_pred CcCCCCccEEEEccceEEeechhHHHHHHHHhhcc--cccHHHHHHHHhhhc
Confidence 99999999999999999999999999999999875 389999999999994
No 16
>2zue_A Arginyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding, protein biosynthesis, ligase/RNA complex; HET: ANP; 2.00A {Pyrococcus horikoshii} PDB: 2zuf_A
Probab=99.96 E-value=8.9e-31 Score=271.37 Aligned_cols=275 Identities=16% Similarity=0.137 Sum_probs=197.4
Q ss_pred cchHHHHHH----HHHHHhhchhc--chhhcccccccccccccccccccccccc-cccccccccccCCCCCCCC-CCCCC
Q 046127 19 LSLQKEFEE----MAARINYSIQN--SLWLLNPLHSKATTHFRNRLKFRQNLFS-LSKGAVFCSYATNTDKSGT-EPADP 90 (345)
Q Consensus 19 ~~~~k~~~~----~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~ 90 (345)
..|||.+++ ||++|+..+.. ...| +.++...|+|||.+++.+ .......-+.....++..+ ..+++
T Consensus 47 ~~lak~~~~~P~~iA~~i~~~l~~~~~~~i------~~vevagGfiN~~l~~~~~~~~~~~~i~~~~~~yG~~~~~~~~~ 120 (629)
T 2zue_A 47 FKLAKLLKRPPIEIAEKIVEKLKLNLPEGI------KDVKAVNGYINVFIDYPHFARILINDILAKGDRFGSSEIGKGKK 120 (629)
T ss_dssp HHHHHHHTSCHHHHHHHHHHHHTTSCCTTE------EEEEEETTEEEEEECHHHHHHHHHHHHHHHGGGTTCCCTTTTCE
T ss_pred HHHHHHcCCCHHHHHHHHHHHhhhccCCCe------EEEEEcCCEEEEEECHHHHHHHHHHHHHhcchhcCCCccCCCCE
Confidence 468888866 99999999975 5555 667777899999999862 3332222234445554333 56789
Q ss_pred EEEEccCCCCCCcCchhHHHHHHHHHHHHHHHHHcCCeEEEEcCCCCcChHHH---------------------------
Q 046127 91 FVLTTPLYYVNAPPHMGSAYTTIAADAIARFQRLLGKKVIFITGTDEHGEKIA--------------------------- 143 (345)
Q Consensus 91 ~~I~~~~PypnG~LHIGHar~~i~~DvlaR~lr~~G~~V~~v~G~D~~G~~I~--------------------------- 143 (345)
++|..++|||||++||||+|+++++|+++|++++.||+|.++.+++|+|.++.
T Consensus 121 V~ve~~spN~~~~~HiGH~Rs~iigD~laR~l~~~G~~V~~~~~i~D~G~Q~~~l~~~~~~~g~~~~~~~~~~~~~~~~~ 200 (629)
T 2zue_A 121 VIVEHTSVNPTKPLHMGHARNAILGDVMARILRFLGYEVEVQNYIDDLGIQFAQVYWGYLRLKEEFERIMNELRERGLKD 200 (629)
T ss_dssp EEEECCCCCTTSCCBHHHHHHHHHHHHHHHHHHHTTCEEEEEEEECTTSHHHHHHHHHHHHCHHHHHHHHHHHHHHTSCS
T ss_pred EEEEeeCCCCCCCCccchhHHHHHHHHHHHHHHHcCCCceEEecccchhHHHHHHHHHHHHhCCcchhhhhhhccccccc
Confidence 99999999999999999999999999999999999999999999999887642
Q ss_pred ------------HHHHhCCCCH--------------------HHHHHHHHHHHHHHHhhcCcccCccccCCChhhHHHHH
Q 046127 144 ------------AAAADGGSSP--------------------SEHCDVVSQAYKTLWKDLDIAYDKFIRTTEPKHEAIVK 191 (345)
Q Consensus 144 ------------~~A~~~g~~p--------------------~~~~~~~~~~~~~~l~~lgI~~D~f~~T~~~~~~~~v~ 191 (345)
..+++.+.+| +++++.+.+.|++++++|||++|.|.+|++..|...++
T Consensus 201 ~~~d~~~g~~y~~~a~~~~~~~~~~~~~~~~~~~~e~gd~~~~~~~~~~~~~f~~~~~~L~I~~D~~~~es~~~~~~~v~ 280 (629)
T 2zue_A 201 NPIDHALGLLYVEVNRRLEDNPELENEIRDIMKKLESGELYGRKLAEEVVRAQMVTTYKLGVKYDLLVWESDIVRRKLFE 280 (629)
T ss_dssp CCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHHHHHHTCCCSEEEEHHHHHHTTHHH
T ss_pred CcchhhHHHHHHHHHHHHhcCchHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHcCCccccccCcCccccchhHH
Confidence 2223222233 78899999999999999999999999998777789999
Q ss_pred HHHHHHHhCCCee---ecccCcccccCCCCccchhhhhcCCcCCCCCCCceEeec--cccccchhHhHHHHHHHHhcCCC
Q 046127 192 EFYSSVLANGDIY---KADYEGLYCVNCEEYKDEKELLENQCCPIHLKPCVARKE--DNYFFALSKYQKLLEDTLTENPD 266 (345)
Q Consensus 192 ~~~~~L~~kG~iy---~~~~~~~yc~~c~~~l~d~el~~~~~c~~~~~pve~r~~--~~~f~~l~~~~~~L~e~l~~~~~ 266 (345)
+++++|.++|++| +++..+++|..|+.+..+.++ +..++.++. ..||.+--.|..+-...+. ++
T Consensus 281 ~vi~~L~~kG~~y~~~~ge~~Ga~~v~~~~~g~~~~~---------~~~v~~ksdG~~~Y~~~Diay~~~K~~ll~--~~ 349 (629)
T 2zue_A 281 IALELLSKNENFYIPSDGKYRGAFVMDLRKLFPDMKN---------PILVLRRSDGTATYTGKDIAYHLWKFGKID--VD 349 (629)
T ss_dssp HHHHHHHTSTTEECCSSSTTTTCEEEECTTTCSSSSC---------CEEEEECTTSCBCHHHHHHHHHHHHTTCSC--CC
T ss_pred HHHHHHHHCCCccccccCCcCCcEEEECcccCCcccc---------CceEEEecCCccccchhhHHHHHHHhhccc--cc
Confidence 9999999999999 456778899999888654432 111222222 2355442222222000111 12
Q ss_pred cccChHHHHHHHHHHhcCCCCcccccCCCCCCcccCC---CCCCcEEEe-------cCchhHHHHhcCC
Q 046127 267 FVQPSFRLNEVQGWIKSGLRDFSISRASVDWGIPVPN---DNKQTIYVW-------FDALLGYISALSE 325 (345)
Q Consensus 267 ~~~P~~~~~~~~~wl~~gL~D~~ISR~~~~WGIpvP~---~~~~~iyVW-------fdal~gYls~~~~ 325 (345)
+..++. -+|.++|. .||+++|+ +.+++|||| |+.+..++.++++
T Consensus 350 fr~~~~------------~~~~~~~~---~wG~~~Pg~~~~~d~~IyV~g~~q~~~~~~l~~~l~~lG~ 403 (629)
T 2zue_A 350 LLYKEW------------DSTTWTTA---PDGKSMPNKFGNANIVINVIGAEQKHPQLAIKYALQLLGF 403 (629)
T ss_dssp CEEEEC------------SSSCEEEE---EEEEECTTSSCCCSEEEEEEEGGGHHHHHHHHHHHHHTTC
T ss_pred ccCCcc------------cccccccC---CCCCCCCCccCCCCcEEEEEeCcHhhHHHHHHHHHHHcCC
Confidence 211110 02333544 79999994 689999999 7778888877765
No 17
>1iq0_A Arginyl-tRNA synthetase; riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; 2.30A {Thermus thermophilus} SCOP: a.27.1.1 c.26.1.1 d.67.2.1
Probab=99.95 E-value=6.4e-29 Score=256.20 Aligned_cols=265 Identities=14% Similarity=0.142 Sum_probs=186.2
Q ss_pred cchHHHHHH----HHHHHhhchhcchhhcccccccccccccccccccccccc-cccccccccccCCCCCCCCCCCCCEEE
Q 046127 19 LSLQKEFEE----MAARINYSIQNSLWLLNPLHSKATTHFRNRLKFRQNLFS-LSKGAVFCSYATNTDKSGTEPADPFVL 93 (345)
Q Consensus 19 ~~~~k~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~I 93 (345)
..|||.+++ ||++|+.+++....| +.++...|++||.+++.+ .......-......++ +++|
T Consensus 41 ~~lak~~~~~P~~iA~~i~~~l~~~~~~------~~~~~~ggfiN~~l~~~~~~~~~~~~~~~~~~~~g-------~v~v 107 (592)
T 1iq0_A 41 FALAKELRKPPQAIAQELKDRLPLPEFV------EEAVPVGGYLNFRLRTEALLREALRPKAPFPRRPG-------VVLV 107 (592)
T ss_dssp SHHHHHTTSCHHHHHHHHHHTCCCCTTE------EEEEEETTEEEEEECHHHHHHHHHSCCCCCCCEEE-------EEEE
T ss_pred HHHHHHcCCCHHHHHHHHHHhccccCcE------EEEEEcCCEEEEEECHHHHHHHHHHHHHhcCcccC-------eEEE
Confidence 468888865 999999999866666 677888899999999853 2222211122222221 8999
Q ss_pred EccCCCCCCcCchhHHHHHHHHHHHHHHHHHcCCeEEEEcCCCCcChHHHH----------------------------H
Q 046127 94 TTPLYYVNAPPHMGSAYTTIAADAIARFQRLLGKKVIFITGTDEHGEKIAA----------------------------A 145 (345)
Q Consensus 94 ~~~~PypnG~LHIGHar~~i~~DvlaR~lr~~G~~V~~v~G~D~~G~~I~~----------------------------~ 145 (345)
+.++|||||++||||+|+++++|+++|++++.||+|.++..++|.|..+.. .
T Consensus 108 e~~spn~~~~~HiGH~R~~iigD~laR~l~~~G~~V~~~~~i~D~G~q~~~li~~~~~~g~d~~~~~~~d~~~g~~y~~~ 187 (592)
T 1iq0_A 108 EHTSVNPNKELHVGHLRNIALGDAIARILAYAGREVLVLNYIDDTGRQAAETLFALRHYGLTWDGKEKYDHFAGRAYVRL 187 (592)
T ss_dssp ECCCCCTTSCCBHHHHHHHHHHHHHHHHHHHTTEEEEEEEEECTTSHHHHHHHHHHHHTTCCCCSSSCHHHHHHHHHHHH
T ss_pred EeeCCCCCCCCcchHHHHHHHHHHHHHHHHHcCCceEEEeccCCcchHHHHHHHHHHHhCCcccCCCCcchhHHHHHHHH
Confidence 999999999999999999999999999999999999999888887744311 1
Q ss_pred ------------------HHhCCCCHHHHHHHHHHHHHHHHhhcCcccCccccCCChhhHHHHHHHHHHHHhCCCeee--
Q 046127 146 ------------------AADGGSSPSEHCDVVSQAYKTLWKDLDIAYDKFIRTTEPKHEAIVKEFYSSVLANGDIYK-- 205 (345)
Q Consensus 146 ------------------A~~~g~~p~~~~~~~~~~~~~~l~~lgI~~D~f~~T~~~~~~~~v~~~~~~L~~kG~iy~-- 205 (345)
+.+.|.. +++++.+.+.|+++|++|||++|.|.+|++..|.+.+++++++|.++|++|+
T Consensus 188 ~~~~~~~~~~~~a~~~~~~~e~g~~-~~~~~~~~~~~~~~~~~LgI~~D~~~~es~~~~~~~v~~~~~~L~~kG~~y~~~ 266 (592)
T 1iq0_A 188 HQDPEYERLQPAIEEVLHALERGEL-REEVNRILLAQMATMHALNARYDLLVWESDIVRAGLLQKALALLEQSPHVFRPR 266 (592)
T ss_dssp HHCTTTGGGHHHHHHHHHHHHTTTT-HHHHHHHHHHHHHHHHHTTCCCSEEEEHHHHHHTTHHHHHHHHHTTSTTEECCS
T ss_pred HHHHHhhhHHHHHHHHHHhCCchHH-HHHHHHHHHHHHHHHHHcCCEeEEeccCCcccccchHHHHHHHHHHCCCcccCc
Confidence 1234443 8999999999999999999999999999877778999999999999999994
Q ss_pred -cccCcccccCCCCccchhhhhcCCcCCCCCCCceEeec--cccccchhHhHHH---HHHHHhcCCCcc-cChHHHHHHH
Q 046127 206 -ADYEGLYCVNCEEYKDEKELLENQCCPIHLKPCVARKE--DNYFFALSKYQKL---LEDTLTENPDFV-QPSFRLNEVQ 278 (345)
Q Consensus 206 -~~~~~~yc~~c~~~l~d~el~~~~~c~~~~~pve~r~~--~~~f~~l~~~~~~---L~e~l~~~~~~~-~P~~~~~~~~ 278 (345)
+.+.+++|..|..+.++.++. ..+..+.. ..|+++--.|.-. +.+.+... .++ .|.
T Consensus 267 ~g~~~G~~~~~~~~~g~~~~l~---------~~vi~ksdG~~~Y~~~D~a~~~~Kl~l~~~~~~~-~~~~~p~------- 329 (592)
T 1iq0_A 267 EGKYAGALVMDASPVIPGLEDP---------FFVLLRSNGTATYYAKDIAFQFWKMGILEGLRFR-PYENPYY------- 329 (592)
T ss_dssp SSTTTTCEEEECTTTSCSCSCC---------EEEEECTTSCBCHHHHHHHHHHHHTTSSCCCEEE-ECCCSSC-------
T ss_pred ccCcCCCEEEechhcCCCCCCC---------ceEEEecCCceEEecchHHHHHHHhhhhhhhhhh-hhhcCcc-------
Confidence 355677888888776554421 11222221 2344432222222 00000010 010 110
Q ss_pred HHHhcCCCCcccccCCCCCCcccCC-CCCCcEEEe-------cCchhHHHHhcCC
Q 046127 279 GWIKSGLRDFSISRASVDWGIPVPN-DNKQTIYVW-------FDALLGYISALSE 325 (345)
Q Consensus 279 ~wl~~gL~D~~ISR~~~~WGIpvP~-~~~~~iyVW-------fdal~gYls~~~~ 325 (345)
+.+.| ..||+++|. +.+++|||| |+.+..++.++++
T Consensus 330 -----~r~~w------~~~g~~~~~~~~~~~iyV~g~~h~~~~~~~~~~~~alG~ 373 (592)
T 1iq0_A 330 -----PGLRT------SAPEGEAYTPKAEETINVVDVRQSHPQALVRAALALAGY 373 (592)
T ss_dssp -----TTCEE------EEEEEEECCCCCSEEEEEEESSSCCCHHHHHHHHHHTTC
T ss_pred -----hhhcc------cccCcccCCCCCCEEEEEEeccHHHHHHHHHHHHHHcCC
Confidence 11223 268999996 789999999 7788888887775
No 18
>3c8z_A Cysteinyl-tRNA synthetase; cysteine ligase, rossmann fold, Cys-SA inhibitor, zinc binding, ATP-binding, aminoacyl-tRNA synthetase; HET: 5CA 1PE EPE; 1.60A {Mycobacterium smegmatis}
Probab=99.95 E-value=3.1e-28 Score=241.23 Aligned_cols=117 Identities=18% Similarity=0.198 Sum_probs=109.3
Q ss_pred CEEEEccCCCCCCcCchhHHHHHHHHHHHHHHHHHcCCeEEEEcCCCCcChHHHHHHHhCCCCHHHHHHHHHHHHHHHHh
Q 046127 90 PFVLTTPLYYVNAPPHMGSAYTTIAADAIARFQRLLGKKVIFITGTDEHGEKIAAAAADGGSSPSEHCDVVSQAYKTLWK 169 (345)
Q Consensus 90 ~~~I~~~~PypnG~LHIGHar~~i~~DvlaR~lr~~G~~V~~v~G~D~~G~~I~~~A~~~g~~p~~~~~~~~~~~~~~l~ 169 (345)
++.+..+.|+|||++||||+|+++++|+++||+|++||+|.+++|+|+||++|+.+|++.|++++++++++.+.|+++|+
T Consensus 39 ~v~~y~~gPt~yg~~HiGHar~~v~~DvlaR~lr~~G~~V~~~~~~dd~g~ki~~~A~~~g~~~~~~~~~~~~~~~~~~~ 118 (414)
T 3c8z_A 39 TATMYVCGITPYDATHLGHAATYLTFDLVHRLWLDAGHTVQYVQNVTDVDDPLFERAERDGIDWRTLGDRETQLFREDMA 118 (414)
T ss_dssp EEEEEECCCCTTSCCBHHHHHHHHHHHHHHHHHHHTTCEEEEEEEECCSCHHHHHHHHHHTCCHHHHHHHHHHHHHHHHH
T ss_pred CceEEeCCCcCCCCcCccccHHHHHHHHHHHHHHHcCCCEEeCCCCCCccHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 44455556788899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCcc-cCccccCCChhhHHHHHHHHHHHHhCCCeeeccc
Q 046127 170 DLDIA-YDKFIRTTEPKHEAIVKEFYSSVLANGDIYKADY 208 (345)
Q Consensus 170 ~lgI~-~D~f~~T~~~~~~~~v~~~~~~L~~kG~iy~~~~ 208 (345)
+|||. +|.|++|++ |.+.++++|++|.++|++|++++
T Consensus 119 ~Lgi~~~d~~~r~t~--~~~~~~~~~~~L~~kG~~Y~~~~ 156 (414)
T 3c8z_A 119 ALRVLPPHDYVAATD--AIAEVVEMVEKLLASGAAYIVED 156 (414)
T ss_dssp HTTCCCCSEEEEGGG--CHHHHHHHHHHHHHHTSEEECSC
T ss_pred HcCCCCCcceecccc--hHHHHHHHHHHHHHCCCEEeccC
Confidence 99999 999998885 88999999999999999999874
No 19
>3tqo_A Cysteinyl-tRNA synthetase; protein synthesis, ligase; 2.30A {Coxiella burnetii}
Probab=99.92 E-value=3.8e-25 Score=220.81 Aligned_cols=130 Identities=19% Similarity=0.191 Sum_probs=119.0
Q ss_pred CCCEEEEccCCCCCCcCchhHHHHHHHHHHHHHHHHHcCCeEEEEcCCCCcChHHHHHHHhCCCCHHHHHHHHHHHHHHH
Q 046127 88 ADPFVLTTPLYYVNAPPHMGSAYTTIAADAIARFQRLLGKKVIFITGTDEHGEKIAAAAADGGSSPSEHCDVVSQAYKTL 167 (345)
Q Consensus 88 ~~~~~I~~~~PypnG~LHIGHar~~i~~DvlaR~lr~~G~~V~~v~G~D~~G~~I~~~A~~~g~~p~~~~~~~~~~~~~~ 167 (345)
+.++.+..++|||+|++||||+|+++++|+++||+|++||+|.++.|+||||++|+.+|++.|++++++++++.+.|+++
T Consensus 23 ~~~v~~YvcGPtvy~~~HIGHaR~~v~~Dvl~R~lr~~Gy~V~~v~n~dD~ddKIi~~A~~~g~~~~e~a~~~~~~f~~d 102 (462)
T 3tqo_A 23 SGKVKLYVCGMTVYDYMHIGHGRSWIIFDMVVRYLRMRGYEVTFVRNITDIDDKIIKRAGENKESPAALAERFIQILHED 102 (462)
T ss_dssp TTEEEEEECCCBTTSCCBHHHHHHHHHHHHHHHHHHHTTCEEEEEECBBCCCHHHHHHHHHTTSCHHHHHHHHHHHHHHH
T ss_pred CCeEEEEeCCCcCCCCCchhhhHHHHHHHHHHHHHHHcCCceEEecCcCCCCcHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 34566666677888999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhcCcccCccc-cCCChhhHHHHHHHHHHHHhCCCeeec-ccCcccccCCCCc
Q 046127 168 WKDLDIAYDKFI-RTTEPKHEAIVKEFYSSVLANGDIYKA-DYEGLYCVNCEEY 219 (345)
Q Consensus 168 l~~lgI~~D~f~-~T~~~~~~~~v~~~~~~L~~kG~iy~~-~~~~~yc~~c~~~ 219 (345)
+++|||.+|.+. +++ .|.+.++++|++|+++|++|+. ++.++||++|...
T Consensus 103 ~~~LgI~~d~~~praT--e~i~~i~~~i~~L~ekG~aY~~~~g~Vyfdv~~~~~ 154 (462)
T 3tqo_A 103 EKALRVLSPDQEPRAT--QYVPEIIKLIQKLLDNQYAYTGQNGDVFFDVRRFKD 154 (462)
T ss_dssp HHHHTCCCCSBCCBGG--GCHHHHHHHHHHHHHHTSEEECTTSCEEECTTTCTT
T ss_pred HHHcCCCCCccccChh--hHHHHHHHHHHHHHHCCCEEEecCCcEEeccccccc
Confidence 999999997554 555 7999999999999999999999 7899999988643
No 20
>1li5_A Cysrs, cysteinyl-tRNA synthetase, transfer RNA-Cys; cysteine, E.coli, ligase; 2.30A {Escherichia coli} SCOP: a.27.1.1 c.26.1.1 PDB: 1li7_A 1u0b_B
Probab=99.91 E-value=1.4e-24 Score=217.51 Aligned_cols=127 Identities=24% Similarity=0.314 Sum_probs=117.0
Q ss_pred CCCCEEEEccCCCCCCcCchhHHHHHHHHHHHHHHHHHcCCeEEEEcCCCCcChHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 046127 87 PADPFVLTTPLYYVNAPPHMGSAYTTIAADAIARFQRLLGKKVIFITGTDEHGEKIAAAAADGGSSPSEHCDVVSQAYKT 166 (345)
Q Consensus 87 ~~~~~~I~~~~PypnG~LHIGHar~~i~~DvlaR~lr~~G~~V~~v~G~D~~G~~I~~~A~~~g~~p~~~~~~~~~~~~~ 166 (345)
+..++++|+ |+|+|++||||+|++|++|+++||+|++||+|.++.|+||+|++|+.+|++.|.+++++++++.+.|++
T Consensus 21 ~~v~~yv~g--Pt~y~~~HiGHar~~v~~D~l~R~lr~~G~~V~~v~~~tD~d~ki~~~A~~~g~~~~~~~~~~~~~f~~ 98 (461)
T 1li5_A 21 GEVGMYVCG--ITVYDLCHIGHGRTFVAFDVVARYLRFLGYKLKYVRNITDIDDKIIKRANENGESFVAMVDRMIAEMHK 98 (461)
T ss_dssp TEEEEEECC--CBSSSCCBHHHHHHHHHHHHHHHHHHHHTCEEEEEECBBCCSHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred CCeeEEEcC--CcCCCCCcccccHHHHHHHHHHHHHHHcCCCEEEeecCCCCcHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 334566654 555599999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhcCccc-CccccCCChhhHHHHHHHHHHHHhCCCeeec-ccCcccccCCC
Q 046127 167 LWKDLDIAY-DKFIRTTEPKHEAIVKEFYSSVLANGDIYKA-DYEGLYCVNCE 217 (345)
Q Consensus 167 ~l~~lgI~~-D~f~~T~~~~~~~~v~~~~~~L~~kG~iy~~-~~~~~yc~~c~ 217 (345)
+|++|||.+ |.|+++++ |.+.+++++++|.++|++|+. ++.+|||+.|.
T Consensus 99 ~~~~LgI~~~d~~~r~t~--~~~~~~~~i~~L~~~G~aY~~~~g~v~f~~~~~ 149 (461)
T 1li5_A 99 DFDALNILRPDMEPRATH--HIAEIIELTEQLIAKGHAYVADNGDVMFDVPTD 149 (461)
T ss_dssp HHHHTTCCCCSBCCBGGG--CHHHHHHHHHHHHHTTSEEECTTSCEEECGGGC
T ss_pred HHHHcCCCCCcccccccc--hHHHHHHHHHHHHHCCCEEEecCCCEEEecccc
Confidence 999999997 78888874 899999999999999999999 89999999874
No 21
>3sp1_A Cysteinyl-tRNA synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, LYME disease; HET: AMP; 2.55A {Borrelia burgdorferi}
Probab=99.90 E-value=2.9e-24 Score=215.73 Aligned_cols=127 Identities=21% Similarity=0.249 Sum_probs=101.3
Q ss_pred CCCEEEEccCCCCCCcCchhHHHHHHHHHHHHHHHHHcCCeEEEEcCC----------CCcChHHHHHHHhCCCCHHHHH
Q 046127 88 ADPFVLTTPLYYVNAPPHMGSAYTTIAADAIARFQRLLGKKVIFITGT----------DEHGEKIAAAAADGGSSPSEHC 157 (345)
Q Consensus 88 ~~~~~I~~~~PypnG~LHIGHar~~i~~DvlaR~lr~~G~~V~~v~G~----------D~~G~~I~~~A~~~g~~p~~~~ 157 (345)
..++|||+ |+|+|.+||||+|++|++|+++||+|++||+|.++.|+ |+||++|+.+|++.|++|++++
T Consensus 42 ~v~~Yvcg--PTvYg~~HIGHar~~v~~Dvl~R~lr~~Gy~V~~v~niTDvGhltG~~DehddKI~~~A~~~g~~~~e~a 119 (501)
T 3sp1_A 42 NVKVYACG--PTVYNYAHIGNFRTYIFGDLLIKTLRFLGYKVNYAMNITDIGHLTGDLDDGEDKVAKTAREKGLTVYEIS 119 (501)
T ss_dssp CEEEEECC--CBCSSCCCHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEBCSCCC-------------------CCHHHHH
T ss_pred cceEEeCC--CcCCCCcchhhhHHHHHHHHHHHHHHHcCCceeEEeeecccccccCCCCCCCcHHHHHHHHcCCCHHHHH
Confidence 44555554 56669999999999999999999999999999999654 6669999999999999999999
Q ss_pred HHHHHHHHHHHhhcCcccCccccCCChhhHHHHHHHHHHHHhCCCeeecccCcccccCCC
Q 046127 158 DVVSQAYKTLWKDLDIAYDKFIRTTEPKHEAIVKEFYSSVLANGDIYKADYEGLYCVNCE 217 (345)
Q Consensus 158 ~~~~~~~~~~l~~lgI~~D~f~~T~~~~~~~~v~~~~~~L~~kG~iy~~~~~~~yc~~c~ 217 (345)
+++.+.|+++|++|||.+|.+.. +++.|...++++|++|+++|++|++++.+|||+++-
T Consensus 120 ~~~~~~f~~d~~~Lgi~~d~~~~-~~t~hi~~v~~~i~~L~~kG~aY~~~g~Vyf~v~~f 178 (501)
T 3sp1_A 120 EFFTEAFFNDCRKLNIVYPDKVL-VASKHIPIMIEVVKILEEKKITYFSNGNVYFDTSCF 178 (501)
T ss_dssp HHHHHHHHHHHHHTTCCCCSEEE-EGGGCHHHHHHHHHHHHHTTCEEEETTEEEECGGGC
T ss_pred HHHHHHHHHHHHHcCCCCCCccc-CcchHHHHHHHHHHHHHHCCCEEEeCCcEEecCCcc
Confidence 99999999999999999997764 467899999999999999999999999999999883
No 22
>1f7u_A Arginyl-tRNA synthetase; RNA-protein complex, aminoacylation; HET: PSU 1MG 2MG H2U M2G 5MC 5MU 1MA ARG; 2.20A {Saccharomyces cerevisiae} SCOP: a.27.1.1 c.26.1.1 d.67.2.1 PDB: 1bs2_A* 1f7v_A*
Probab=99.88 E-value=5.9e-23 Score=211.74 Aligned_cols=181 Identities=15% Similarity=0.111 Sum_probs=145.2
Q ss_pred HHHHHHHhhchhcchhhccccccccccccccccccccccccccccc-ccccccCCCCCCC-CCCCCCEEEEccCCCCCCc
Q 046127 26 EEMAARINYSIQNSLWLLNPLHSKATTHFRNRLKFRQNLFSLSKGA-VFCSYATNTDKSG-TEPADPFVLTTPLYYVNAP 103 (345)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~I~~~~PypnG~ 103 (345)
++||++|+.+++....| +.++...+++||.+++.++.... ..-+.....++.. ...+++++|...+|||||+
T Consensus 84 ~~iA~~i~~~l~~~~~i------~~ve~ag~fiN~~l~~~~~~~~~~~~i~~~~~~~G~~~~~~~~~V~ve~~spN~~~p 157 (607)
T 1f7u_A 84 KDLAVQWAEKFPCGDFL------EKVEANGPFIQFFFNPQFLAKLVIPDILTRKEDYGSCKLVENKKVIIEFSSPNIAKP 157 (607)
T ss_dssp HHHHHHHHHTCCCTTTE------EEEEEETTEEEEEECHHHHHHHHHHHHHHHGGGTTCCCCSSCCEEEEECCCCBTTSC
T ss_pred HHHHHHHHHhccccCce------eEEEEcCCEEEEEECHHHHHHHHHHHHHhhhhhcCCCcccCCCeEEEEecCCCCCCC
Confidence 46999999999777667 77888889999999986655422 2223444455433 3567889999999999999
Q ss_pred CchhHHHHHHHHHHHHHHHHHcCCeEEEEcCCCCcChHHH----------------------------------------
Q 046127 104 PHMGSAYTTIAADAIARFQRLLGKKVIFITGTDEHGEKIA---------------------------------------- 143 (345)
Q Consensus 104 LHIGHar~~i~~DvlaR~lr~~G~~V~~v~G~D~~G~~I~---------------------------------------- 143 (345)
+||||+|+++++|+++|+++..||+|.++..++|+|.++.
T Consensus 158 lHvGHlRs~iiGD~laRil~~~G~~V~~~~~i~D~G~Q~~~l~~~~~~~g~~~~~~~~~i~~l~~~Y~~~~~~~~~~~e~ 237 (607)
T 1f7u_A 158 FHAGHLRSTIIGGFLANLYEKLGWEVIRMNYLGDWGKQFGLLAVGFERYGNEEALVKDPIHHLFDVYVRINKDIEEEGDS 237 (607)
T ss_dssp CBGGGHHHHHHHHHHHHHHHHTTCEEEEEEEEBCCSHHHHHHHHHHHHHCCHHHHHHCHHHHHHHHHHHHHHHHHHSTTS
T ss_pred CccchHHHHHHHHHHHHHHHHcCCCeeEEEeecCcchHHHHHHHHHHHhCchhhccCCChHHHHHHHHHHHHHhhhcccc
Confidence 9999999999999999999999999999999999887642
Q ss_pred --------HHHHh------CCCC-----HHHHHHHHHHHHHHHHhhcCcccCccccCCChhhHHHHHHHHHHHHhCCCee
Q 046127 144 --------AAAAD------GGSS-----PSEHCDVVSQAYKTLWKDLDIAYDKFIRTTEPKHEAIVKEFYSSVLANGDIY 204 (345)
Q Consensus 144 --------~~A~~------~g~~-----p~~~~~~~~~~~~~~l~~lgI~~D~f~~T~~~~~~~~v~~~~~~L~~kG~iy 204 (345)
..|++ .|.+ .+++++.+.+.|++++++|||.+|.|.++++ .+...+.++++.|.++|++|
T Consensus 238 g~~~~~i~~~A~~~~~~le~gd~e~~~~w~~~~~~~~~~~~~~~~~L~V~fD~~~~ES~-~~~~~~~~vi~~L~~kG~~y 316 (607)
T 1f7u_A 238 IPLEQSTNGKAREYFKRMEDGDEEALKIWKRFREFSIEKYIDTYARLNIKYDVYSGESQ-VSKESMLKAIDLFKEKGLTH 316 (607)
T ss_dssp SCHHHHSSHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHTTCCCSEEEEGGG-CCHHHHHHHHHHHHHTTCEE
T ss_pred ccccHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHHcCCcceeecCcch-hhhhHHHHHHHHHHhCCCEE
Confidence 22333 2433 3578999999999999999999999887774 23378899999999999999
Q ss_pred ecccCcccc
Q 046127 205 KADYEGLYC 213 (345)
Q Consensus 205 ~~~~~~~yc 213 (345)
+.++.+|+.
T Consensus 317 e~dGa~~~~ 325 (607)
T 1f7u_A 317 EDKGAVLID 325 (607)
T ss_dssp EETTEEEEE
T ss_pred EECCcEEEE
Confidence 988777664
No 23
>1irx_A Lysyl-tRNA synthetase; beta sandwitch, zinc-binding structure, rossmann fold, alpha-helix CAGE; 2.60A {Pyrococcus horikoshii} SCOP: a.97.1.2 c.26.1.1
Probab=99.74 E-value=3.5e-19 Score=181.13 Aligned_cols=109 Identities=14% Similarity=0.057 Sum_probs=96.5
Q ss_pred EEEEccCCCCCCcCchhHHHHHHHHHHHHHHHHHcCCeEEEEcCCCCcC--hHH---HHHHHhC--CCCH----------
Q 046127 91 FVLTTPLYYVNAPPHMGSAYTTIAADAIARFQRLLGKKVIFITGTDEHG--EKI---AAAAADG--GSSP---------- 153 (345)
Q Consensus 91 ~~I~~~~PypnG~LHIGHar~~i~~DvlaR~lr~~G~~V~~v~G~D~~G--~~I---~~~A~~~--g~~p---------- 153 (345)
.+|+.+.|||||++||||+|+++.+|+++|+++++|++|.++.++||+| .+| ...|.+. |+++
T Consensus 21 ~yv~~tgPsPtG~lHIGhaR~al~~D~laR~l~~~g~~v~fi~~idD~d~~rkip~~~~~a~~~~~G~~~~~~p~p~~~~ 100 (523)
T 1irx_A 21 KYVVESGITPSGYVHVGNFRELFTAYIVGHALRDKGYEVRHIHMWDDYDRFRKVPRNVPQEWKDYLGMPISEVPDPWGCH 100 (523)
T ss_dssp EEEEEEEECCSSCCCHHHHHHHHHHHHHHHHHHTTTCEEEEEEEECTTSBCCCCCSSSCGGGGGGTTSBGGGSCCTTSSS
T ss_pred eEEECCCCCCCCCcccCCcHHHHHHHHHHHHHHHcCCCEEEEEeeCCcchhhhhhhHHHHHHHHHcCCCcccCCcchhhH
Confidence 5666567899999999999999999999999999999999999999999 766 4455555 8887
Q ss_pred HHHHHHHHHHHHHHHhhcCcccCccccCCChhhHH-HHHHHHHHHHhCC
Q 046127 154 SEHCDVVSQAYKTLWKDLDIAYDKFIRTTEPKHEA-IVKEFYSSVLANG 201 (345)
Q Consensus 154 ~~~~~~~~~~~~~~l~~lgI~~D~f~~T~~~~~~~-~v~~~~~~L~~kG 201 (345)
+++++++.+.|+++|++|||++|.+ ++++. |.+ .+++++++|+++|
T Consensus 101 ~~~~~~~~~~~~~~l~~Lgi~~D~~-~~se~-~~~g~~~~~i~~L~~~G 147 (523)
T 1irx_A 101 ESYAEHFMRKFEEEVEKLGIEVDLL-YASEL-YKRGEYSEEIRLAFEKR 147 (523)
T ss_dssp SSHHHHHHHHHHHHHHTTTCCCEEE-EHHHH-HHTTTTHHHHHHHHHTH
T ss_pred HHHHHHHHHHHHHHHHHcCCCceEE-echhh-ccchHHHHHHHHHHHch
Confidence 8899999999999999999999987 66643 777 8999999999999
No 24
>3fnr_A Arginyl-tRNA synthetase; transferase, PSI-2, NYSGXRC, struc genomics, protein structure initiative; 2.20A {Campylobacter jejuni}
Probab=99.72 E-value=8.8e-18 Score=168.08 Aligned_cols=134 Identities=18% Similarity=0.212 Sum_probs=106.9
Q ss_pred CCCCCCCCCCCCCEEEEccCCCCCCcCchhHHHHHHHHHHHHHHHHHcCCeEEEEcCCCCcChHHHHHH-------Hh--
Q 046127 78 TNTDKSGTEPADPFVLTTPLYYVNAPPHMGSAYTTIAADAIARFQRLLGKKVIFITGTDEHGEKIAAAA-------AD-- 148 (345)
Q Consensus 78 ~~~~~~~~~~~~~~~I~~~~PypnG~LHIGHar~~i~~DvlaR~lr~~G~~V~~v~G~D~~G~~I~~~A-------~~-- 148 (345)
..+++..+.++++++|..++|||||+|||||+|+++++|+++|++++.||+|.....++|.|.++..-+ .+
T Consensus 19 ~~~yG~~~~~~~~v~vE~ss~n~~~~~h~gh~r~~~~gd~~~r~~~~~G~~v~r~nyi~D~G~Q~g~l~~~~~~~y~~~~ 98 (464)
T 3fnr_A 19 PNDFTKGEKKQESFLLEYVSANPTGPLHIGHARGAVFGDTLTRLARHLGYKFNTEYYVNDAGNQIYLLGLSILLSVKESI 98 (464)
T ss_dssp GGGTTCCCCCSCEEEEECCCCCSSSSCBGGGHHHHHHHHHHHHHHHHTTCEEEEEEEECCCHHHHHHHHHHHHHHHHHHT
T ss_pred HHhcCCCCCCCCEEEEEeCCCCCCCCCccchhHHHHHHHHHHHHHHHcCCceEEEeeeCCccHHHHHHHHHHHHHHHHHh
Confidence 334443333678999999999999999999999999999999999999999999999999999873321 11
Q ss_pred CCCC---H----------------------------------HHHHHHHHHHHHHHHhhcCcccCccccCCChhhHHHHH
Q 046127 149 GGSS---P----------------------------------SEHCDVVSQAYKTLWKDLDIAYDKFIRTTEPKHEAIVK 191 (345)
Q Consensus 149 ~g~~---p----------------------------------~~~~~~~~~~~~~~l~~lgI~~D~f~~T~~~~~~~~v~ 191 (345)
.+.+ | +..++...+.|++++++|||.||.|..+++ .|. .+.
T Consensus 99 ~~~~~~~p~~~y~g~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~V~fD~~~~Ess-~~~-~~~ 176 (464)
T 3fnr_A 99 LHENVEYPEQYYKGEYIVDLAKEAFEKFGKEFFSEENIPSLADWAKDKMLVLIKQNLEQAKIKIDSYVSERS-YYD-ALN 176 (464)
T ss_dssp SCCCCCCCSSCCCSHHHHHHHHHHHHHHCGGGCSGGGHHHHHHHHHHHHHHHHHHHHHHTTCCCSCEEEGGG-GST-THH
T ss_pred cCCCCCCchhhcCccHHHHHHHHHHHhcchhhcCcHHHHHHHHHHHHHHHHHHHHHHHHhCCCceeecCHHH-HHH-HHH
Confidence 1111 0 123355677899999999999998876643 344 899
Q ss_pred HHHHHHHhCCCeeecccCcccc
Q 046127 192 EFYSSVLANGDIYKADYEGLYC 213 (345)
Q Consensus 192 ~~~~~L~~kG~iy~~~~~~~yc 213 (345)
++++.|.++|++|++++..|..
T Consensus 177 ~vv~~L~~~g~~~e~dGa~~~~ 198 (464)
T 3fnr_A 177 ATLESLKEHKGIYEQEGKIWLA 198 (464)
T ss_dssp HHHHHHHHTTCEEEETTEEEEC
T ss_pred HHHHHHHHCCCEEEeCCeEEEE
Confidence 9999999999999999887774
No 25
>1nzj_A Hypothetical protein YADB; Zn cluster, glutamyl T-RNA synthetase, structural genomics, unknown function; 1.50A {Escherichia coli} SCOP: c.26.1.1 PDB: 2zlz_A* 4a91_A*
Probab=99.05 E-value=1.1e-10 Score=110.41 Aligned_cols=94 Identities=10% Similarity=0.119 Sum_probs=74.1
Q ss_pred EEEccCCCCCCcCchhHHHHHHHHHHHHHHHHHcCCeEEEEcCCCCcChHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhc
Q 046127 92 VLTTPLYYVNAPPHMGSAYTTIAADAIARFQRLLGKKVIFITGTDEHGEKIAAAAADGGSSPSEHCDVVSQAYKTLWKDL 171 (345)
Q Consensus 92 ~I~~~~PypnG~LHIGHar~~i~~DvlaR~lr~~G~~V~~v~G~D~~G~~I~~~A~~~g~~p~~~~~~~~~~~~~~l~~l 171 (345)
+++.-+|+|||+|||||+|+++....++| ++.+.++.-++|.+.+ .-...+.+.|.++|++|
T Consensus 6 v~~RFAPsPtG~LHiG~~rtal~n~l~Ar-----~~~g~~ilRieDtD~~-------------R~~~~~~~~I~~dL~~L 67 (298)
T 1nzj_A 6 YIGRFAPSPSGELHFGSLIAALGSYLQAR-----ARQGRWLVRIEDIDPP-------------REVPGAAETILRQLEHY 67 (298)
T ss_dssp CEEEECCCTTSCCCHHHHHHHHHHHHHHH-----HTTCEEEEEECCSCGG-------------GSCTTHHHHHHHHHHHT
T ss_pred eEEEECcCCCCCccHHHHHHHHHHHHHHH-----hcCCeEEEEEecCCch-------------hhHHHHHHHHHHHHHHc
Confidence 56778889999999999999985555554 5567777777776543 12256889999999999
Q ss_pred CcccCc-cccCCChhhHHHHHHHHHHHHhCCCeee
Q 046127 172 DIAYDK-FIRTTEPKHEAIVKEFYSSVLANGDIYK 205 (345)
Q Consensus 172 gI~~D~-f~~T~~~~~~~~v~~~~~~L~~kG~iy~ 205 (345)
||.+|. .++.+ .+.+...+++++|.++|++|.
T Consensus 68 Gl~~D~~~~~qS--er~~~y~~~~~~L~~~G~aY~ 100 (298)
T 1nzj_A 68 GLHWDGDVLWQS--QRHDAYREALAWLHEQGLSYY 100 (298)
T ss_dssp TCCCSSCCEEGG--GCHHHHHHHHHHHHHTTCEEE
T ss_pred CCCCCCCCeeee--CCHHHHHHHHHHHHHcCCccc
Confidence 999995 44444 467888999999999999996
No 26
>3aii_A Glutamyl-tRNA synthetase; amino-acyl tRNA synthetase, ligase; 1.65A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=98.99 E-value=2.6e-10 Score=115.43 Aligned_cols=94 Identities=15% Similarity=0.163 Sum_probs=78.3
Q ss_pred EEEccCCCCCCcCchhHHHHHHHHHHHHHHHHHcCCeEEEEcCCCCcChHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhc
Q 046127 92 VLTTPLYYVNAPPHMGSAYTTIAADAIARFQRLLGKKVIFITGTDEHGEKIAAAAADGGSSPSEHCDVVSQAYKTLWKDL 171 (345)
Q Consensus 92 ~I~~~~PypnG~LHIGHar~~i~~DvlaR~lr~~G~~V~~v~G~D~~G~~I~~~A~~~g~~p~~~~~~~~~~~~~~l~~l 171 (345)
+++.-+|+|||+|||||+|++++.+.++| +|.+.++..+||.+.+ .-..++.+.|.++|+.|
T Consensus 97 v~tRFaPsPtG~LHIGhaRtal~n~l~Ar-----~~~G~~iLRieDtD~~-------------R~~~e~~~~I~edL~wL 158 (553)
T 3aii_A 97 VVLRFAPNPSGPLHIGHARAAILNHEYAR-----KYDGRLILRIEDTDPR-------------RVDPEAYDMIPADLEWL 158 (553)
T ss_dssp CEEEECCCSSSSCBHHHHHHHHHHHHHHH-----HTTCEEEEEECCCCGG-------------GCCTTHHHHHHHHHHHH
T ss_pred eEEEeCCCCCCCccHHHHHHHHHHHHHHH-----HcCCEEEEEECcCCcc-------------cccHHHHHHHHHHHHHc
Confidence 67888899999999999999998666665 5677788888887643 11446889999999999
Q ss_pred CcccCccccCCChhhHHHHHHHHHHHHhCCCeee
Q 046127 172 DIAYDKFIRTTEPKHEAIVKEFYSSVLANGDIYK 205 (345)
Q Consensus 172 gI~~D~f~~T~~~~~~~~v~~~~~~L~~kG~iy~ 205 (345)
|+.+|..++.+ .|.+...+.+.+|+++|++|.
T Consensus 159 Gl~wd~~~~qS--dr~~~y~~~~~~Li~~G~AY~ 190 (553)
T 3aii_A 159 GVEWDETVIQS--DRMETYYEYTEKLIERGGAYV 190 (553)
T ss_dssp TCCCSEEEEGG--GGHHHHHHHHHHHHHTTSEEE
T ss_pred CCCCCCCcccc--cCHHHHHHHHHHHHHcCCcee
Confidence 99999766555 688899999999999999996
No 27
>2o5r_A Glutamyl-tRNA synthetase 1; TM1351, EC 6.1.1.17, glutamate-T ligase 1, glurs 1, structural genomics, joint center for ST genomics, JCSG; 2.34A {Thermotoga maritima}
Probab=98.96 E-value=7.1e-10 Score=111.35 Aligned_cols=99 Identities=15% Similarity=0.096 Sum_probs=76.0
Q ss_pred CCEEEEccCCCCCCcCchhHHHHHHHHHHHHHHHHHcCCeEEEEcCCCCcChHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Q 046127 89 DPFVLTTPLYYVNAPPHMGSAYTTIAADAIARFQRLLGKKVIFITGTDEHGEKIAAAAADGGSSPSEHCDVVSQAYKTLW 168 (345)
Q Consensus 89 ~~~~I~~~~PypnG~LHIGHar~~i~~DvlaR~lr~~G~~V~~v~G~D~~G~~I~~~A~~~g~~p~~~~~~~~~~~~~~l 168 (345)
-.++++..+|+|||+|||||+|+++++|.+||. ..|.-++. ++|.+ ++...+...+.|.++|
T Consensus 11 ~~vv~~RfaPsPTG~LHiG~aRtAl~n~~~Ar~--~~G~~iLR---ieDtD-------------~~r~~~~~~~~I~~~l 72 (481)
T 2o5r_A 11 HHMVRVRFAPSPTGFLHVGGARTALFNFLFARK--EKGKFILR---IEDTD-------------LERSEREYEEKLMESL 72 (481)
T ss_dssp --CCEEEECCCCCSCCBHHHHHHHHHHHHHHHH--HTCEEEEC---BCCSS-------------CCSGGGHHHHHHHHHH
T ss_pred ceEEEEEECCCCCCCcCHHHHHHHHHHHHHHHH--cCCeEEEE---EecCC-------------ccccHHHHHHHHHHHH
Confidence 458889999999999999999999999999996 67866655 44443 1123355677889999
Q ss_pred hhcCcccCccc-------cCCChhhHHHHHHHHHHHHhCCCeee
Q 046127 169 KDLDIAYDKFI-------RTTEPKHEAIVKEFYSSVLANGDIYK 205 (345)
Q Consensus 169 ~~lgI~~D~f~-------~T~~~~~~~~v~~~~~~L~~kG~iy~ 205 (345)
+.||+.+|..+ ....+.+.+...++.++|.++|.+|.
T Consensus 73 ~wlGl~~de~p~~gg~~g~y~QS~r~~~y~~~a~~L~~~G~aY~ 116 (481)
T 2o5r_A 73 RWLGLLWDEGPDVGGDHGPYRQSERVEIYREHAERLVKEGKAYY 116 (481)
T ss_dssp HHHTCCCSBBTTTBCTTCCCBGGGGHHHHHHHHHHHHHTTSEEE
T ss_pred HHcCCCCCCCcccCCCCCceeeeccHHHHHHHHHHHHHCCCeeE
Confidence 99999999631 11234677888899999999999984
No 28
>1qtq_A GLNRS, protein (glutaminyl-tRNA synthetase); glutamine, trnaGln, E. coli, complex, ligase/RNA complex; HET: QSI; 2.25A {Escherichia coli} SCOP: b.53.1.2 c.26.1.1 PDB: 1gsg_P* 1gts_A* 1gtr_A* 1zjw_A* 1o0b_A* 1o0c_A* 1qru_A* 1qrs_A* 1qrt_A* 1euy_A* 1euq_A* 1exd_A* 2rd2_A* 2re8_A* 1nyl_A
Probab=98.92 E-value=1.1e-09 Score=110.80 Aligned_cols=94 Identities=15% Similarity=0.013 Sum_probs=74.5
Q ss_pred EEEccCCCCCCcCchhHHHHHHHHHHHHHHHHHcCCeEEEEcCCCCcChHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhc
Q 046127 92 VLTTPLYYVNAPPHMGSAYTTIAADAIARFQRLLGKKVIFITGTDEHGEKIAAAAADGGSSPSEHCDVVSQAYKTLWKDL 171 (345)
Q Consensus 92 ~I~~~~PypnG~LHIGHar~~i~~DvlaR~lr~~G~~V~~v~G~D~~G~~I~~~A~~~g~~p~~~~~~~~~~~~~~l~~l 171 (345)
+++.-+|.|||+|||||+|++++.+.+|| ++.+.++..+||.+.. ....++.+.|.++|+.|
T Consensus 27 v~tRFaPSPtG~LHIGhaRtal~n~l~Ar-----~~gG~fiLRieDTD~~-------------R~~~e~~~~I~edL~wL 88 (553)
T 1qtq_A 27 VHTRFPPEPNGYLHIGHAKSICLNFGIAQ-----DYKGQCNLRFDDTNPV-------------KEDIEYVESIKNDVEWL 88 (553)
T ss_dssp CEEEECCCTTSCCBHHHHHHHHHHHHHHH-----HTTCEEEEEECCCCGG-------------GCCHHHHHHHHHHHHHT
T ss_pred eEEEeCCCCCCCccHHHHHHHHHHHHHHH-----HcCCEEEEEECCCCch-------------hcCHHHHHHHHHHHHHc
Confidence 67788889999999999999999777777 3555677777776531 23567899999999999
Q ss_pred CcccC-ccccCCChhhHHHHHHHHHHHHhCCCeee
Q 046127 172 DIAYD-KFIRTTEPKHEAIVKEFYSSVLANGDIYK 205 (345)
Q Consensus 172 gI~~D-~f~~T~~~~~~~~v~~~~~~L~~kG~iy~ 205 (345)
|+.+| ..++.+ .|.+...+...+|+++|++|.
T Consensus 89 Gl~wde~~~~qS--er~~~~~~~a~~Li~~G~AY~ 121 (553)
T 1qtq_A 89 GFHWSGNVRYSS--DYFDQLHAYAIELINKGLAYV 121 (553)
T ss_dssp TCCCSSSCEEGG--GGHHHHHHHHHHHHHTTSEEE
T ss_pred CCCCCCCCeehc--ccHHHHHHHHHHHHHCCCcee
Confidence 99996 444444 567777778889999999996
No 29
>3al0_C Glutamyl-tRNA(Gln) amidotransferase subunit C, GL tRNA synthetase 2; protein-RNA complex, ligase-RNA complex; HET: GSU; 3.37A {Thermotoga maritima}
Probab=98.84 E-value=5.4e-09 Score=107.30 Aligned_cols=96 Identities=17% Similarity=0.162 Sum_probs=73.5
Q ss_pred CCEEEEccCCCCCCcCchhHHHHHHHHHHHHHHHHHcCCeEEEEcCCCCcChHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Q 046127 89 DPFVLTTPLYYVNAPPHMGSAYTTIAADAIARFQRLLGKKVIFITGTDEHGEKIAAAAADGGSSPSEHCDVVSQAYKTLW 168 (345)
Q Consensus 89 ~~~~I~~~~PypnG~LHIGHar~~i~~DvlaR~lr~~G~~V~~v~G~D~~G~~I~~~A~~~g~~p~~~~~~~~~~~~~~l 168 (345)
+++.+-.+ |+|||+|||||+|+++..+.+||. ..|. ++.-++|.+ +..-...+.+.|.++|
T Consensus 128 ~~v~~RFa-PsPTG~LHiG~artAl~n~l~Ar~--~~G~---~ilRieDtD-------------~~r~~~~~~~~I~~dL 188 (592)
T 3al0_C 128 ELVRVRFA-PSPTGHLHVGGARTALFNWMFARK--EGGK---FILRIEDTD-------------TERSSREYEQQILESL 188 (592)
T ss_dssp CCCEEEEC-CCSSSCCBHHHHHHHHHHHHHHHH--HTCE---EEECBCCCC-------------SSSCCHHHHHHHHHHH
T ss_pred CeEEEEEC-CCCCCCccHHHHHHHHHHHHHHHh--cCCc---EEEEecCcC-------------hhhccHHHHHHHHHHH
Confidence 35555555 899999999999999999999995 4554 444455543 2223456788999999
Q ss_pred hhcCcccCcc---------ccCCChhhHHHHHHHHHHHHhCCCeee
Q 046127 169 KDLDIAYDKF---------IRTTEPKHEAIVKEFYSSVLANGDIYK 205 (345)
Q Consensus 169 ~~lgI~~D~f---------~~T~~~~~~~~v~~~~~~L~~kG~iy~ 205 (345)
++|||.+|.- ++.+ .+.+...+.+.+|.++|++|.
T Consensus 189 ~wlGl~~D~~~~~gG~~gp~~qS--er~~~y~~~~~~L~~~G~aY~ 232 (592)
T 3al0_C 189 RWCGLDWDEGPDIGGDFGPYRQS--ERLEIYREYAEKLVEDKRAYY 232 (592)
T ss_dssp HHTTCCCSBBTTTBCTTCCCBST--TCHHHHHHHHHHHHHTTTEEE
T ss_pred HHcCCCCCCCCCcCCCCCCeeee--CCHHHHHHHHHHHHHcCCceE
Confidence 9999999962 3333 456788999999999999996
No 30
>2hz7_A Glutaminyl-tRNA synthetase; rossmann fold, GLNRS core, class I aminoacyl-tRNA synthetase, ligase; 2.30A {Deinococcus radiodurans}
Probab=98.84 E-value=2e-09 Score=113.46 Aligned_cols=94 Identities=15% Similarity=0.124 Sum_probs=76.6
Q ss_pred EEEccCCCCCCcCchhHHHHHHHHHHHHHHHHHcCCeEEEEcCCCCcChHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhc
Q 046127 92 VLTTPLYYVNAPPHMGSAYTTIAADAIARFQRLLGKKVIFITGTDEHGEKIAAAAADGGSSPSEHCDVVSQAYKTLWKDL 171 (345)
Q Consensus 92 ~I~~~~PypnG~LHIGHar~~i~~DvlaR~lr~~G~~V~~v~G~D~~G~~I~~~A~~~g~~p~~~~~~~~~~~~~~l~~l 171 (345)
+++.-+|.|||+|||||+|++++...++| +|.+.++..+||.+.. .-..++.+.|.++|++|
T Consensus 67 v~tRFaPSPtG~LHIGhARtAL~n~l~Ar-----~~gG~fiLRIEDTD~~-------------R~~~e~~~~IledL~wL 128 (851)
T 2hz7_A 67 VVTRFPPDPSGYAHLGHVFASLLDFNTAR-----QYGGQFNLRMDDTNPE-------------LARQEYVDSIADDLKWL 128 (851)
T ss_dssp CEEEECCCSSSCCBHHHHHHHHHHHHHHH-----HTTCEEEEEECCCCTT-------------TCCHHHHHHHHHHHHHH
T ss_pred eEEEeCCCCCCCccHHHHHHHHHHHHHHH-----HcCCEEEEEECcCCcc-------------cccHHHHHHHHHHHHHc
Confidence 67888899999999999999999777766 4566777777777643 12557899999999999
Q ss_pred CcccC-ccccCCChhhHHHHHHHHHHHHhCCCeee
Q 046127 172 DIAYD-KFIRTTEPKHEAIVKEFYSSVLANGDIYK 205 (345)
Q Consensus 172 gI~~D-~f~~T~~~~~~~~v~~~~~~L~~kG~iy~ 205 (345)
|+.+| ..++.+ .|.+...+++.+|+++|++|.
T Consensus 129 Gl~wde~~~~qS--er~d~y~e~a~~LI~~G~AY~ 161 (851)
T 2hz7_A 129 GLDWGEHFYYAS--DYFDRYYAYAEQLIRQGDAYV 161 (851)
T ss_dssp TCCCTTCEEEGG--GGHHHHHHHHHHHHHTTSEEE
T ss_pred CCCCCCCcccHh--hhHHHHHHHHHHHHHCCCcEe
Confidence 99996 444444 688899999999999999996
No 31
>2cfo_A Glutamyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase, ATP-binding, nucleotide-B; HET: GLU; 2.45A {Synechococcus elongatus}
Probab=98.84 E-value=1.9e-09 Score=108.38 Aligned_cols=94 Identities=15% Similarity=0.117 Sum_probs=72.8
Q ss_pred EEEccCCCCCCcCchhHHHHHHHHHHHHHHHHHcCCeEEEEcCCCCcChHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhc
Q 046127 92 VLTTPLYYVNAPPHMGSAYTTIAADAIARFQRLLGKKVIFITGTDEHGEKIAAAAADGGSSPSEHCDVVSQAYKTLWKDL 171 (345)
Q Consensus 92 ~I~~~~PypnG~LHIGHar~~i~~DvlaR~lr~~G~~V~~v~G~D~~G~~I~~~A~~~g~~p~~~~~~~~~~~~~~l~~l 171 (345)
+++.-.|.|||+|||||+|+++....++| ++.+.++.-+||.+. +. -...+.+.|.++|+.|
T Consensus 2 v~~RFAPSPtG~lHiG~artal~n~l~Ar-----~~~G~filRieDtD~-------~R------~~~~~~~~i~~dL~wL 63 (492)
T 2cfo_A 2 VRVRLAPSPTGNLHIGTARTAVFNWLYAR-----HRGGKFILRIEDTDR-------ER------SRPEYTENILEGLQWL 63 (492)
T ss_dssp CEEEECCCTTSCCBHHHHHHHHHHHHHHH-----HTTCEEEEEECCCSS-------SS------CCHHHHHHHHHHHHHT
T ss_pred ceEEeCCCCCCCccHHHHHHHHHHHHHHH-----hcCCeEEEEEeeCCc-------cc------cchHHHHHHHHHHHHc
Confidence 35667889999999999999998666665 455666666776652 11 1256789999999999
Q ss_pred CcccCc-cccCCChhhHHHHHHHHHHHHhCCCeee
Q 046127 172 DIAYDK-FIRTTEPKHEAIVKEFYSSVLANGDIYK 205 (345)
Q Consensus 172 gI~~D~-f~~T~~~~~~~~v~~~~~~L~~kG~iy~ 205 (345)
||.+|. .++.+ .+.+...+.+.+|.++|++|.
T Consensus 64 Gl~wde~~~~QS--~r~~~y~~~~~~Li~~G~AY~ 96 (492)
T 2cfo_A 64 GLTWDEGPYFQS--DRLDLYRQAIQTLLDKGLAYY 96 (492)
T ss_dssp TCCCSEEEEEGG--GCHHHHHHHHHHHHHTTSEEE
T ss_pred CCCCCCCCcccc--CCHHHHHHHHHHHHHCCCceE
Confidence 999995 44444 577788899999999999995
No 32
>4g6z_A Glutamate-tRNA ligase; aminoacyl-tRNA synthetase, AARS, class 1B AARS, ATP-dependen charging, protein synthesis, structural genomics; HET: GLU; 2.05A {Burkholderia thailandensis}
Probab=98.73 E-value=1.8e-08 Score=101.00 Aligned_cols=94 Identities=17% Similarity=0.144 Sum_probs=72.9
Q ss_pred EEEccCCCCCCcCchhHHHHHHHHHHHHHHHHHcCCeEEEEcCCCCcChHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhc
Q 046127 92 VLTTPLYYVNAPPHMGSAYTTIAADAIARFQRLLGKKVIFITGTDEHGEKIAAAAADGGSSPSEHCDVVSQAYKTLWKDL 171 (345)
Q Consensus 92 ~I~~~~PypnG~LHIGHar~~i~~DvlaR~lr~~G~~V~~v~G~D~~G~~I~~~A~~~g~~p~~~~~~~~~~~~~~l~~l 171 (345)
+++.-.|.|||+|||||+|+++..+.++|. ..| .++.-+||.+. ......+.+.|.++|++|
T Consensus 26 v~~RFAPSPTG~lHiG~~rtal~n~l~Ar~--~~G---~filRieDtD~-------------~R~~~~~~~~i~~dl~wl 87 (490)
T 4g6z_A 26 VRTRFAPSPTGFIHLGNIRSALYPWAFARK--MKG---TFVLRIEDTDV-------------ERSSQEAVDAILEGMAWL 87 (490)
T ss_dssp CEEEECCCCCSCCBHHHHHHHHHHHHHHHH--TTC---EEEEEECCCCG-------------GGCCHHHHHHHHHHHHHT
T ss_pred ceEEeCCCCCCCccHHHHHHHHHHHHHHHh--cCC---eEEEEeCCCCc-------------ccccHHHHHHHHHHHHHc
Confidence 567777899999999999999998888883 344 45555555442 112357899999999999
Q ss_pred CcccCcc-ccCCChhhHHHHHHHHHHHHhCCCeee
Q 046127 172 DIAYDKF-IRTTEPKHEAIVKEFYSSVLANGDIYK 205 (345)
Q Consensus 172 gI~~D~f-~~T~~~~~~~~v~~~~~~L~~kG~iy~ 205 (345)
||.+|.. ++.+ .+.+...+++.+|.++|++|.
T Consensus 88 Gl~~d~~~~~qS--~r~~~y~~~~~~Li~~G~aY~ 120 (490)
T 4g6z_A 88 GLDYDEGPYYQM--QRMDRYREVLAQMQEKGLVYP 120 (490)
T ss_dssp TCCCSEEEEEGG--GCHHHHHHHHHHHHHTTSEEE
T ss_pred CCCCCCCCcccc--cCHHHHHHHHHHHHHCCCEEe
Confidence 9999953 3333 577888999999999999994
No 33
>3afh_A Glutamyl-tRNA synthetase 2; protein-substrate complex, aminoacyl-tRNA synthetase, ATP-binding, ligase, nucleotide-binding; HET: GSU; 2.00A {Thermotoga maritima} PDB: 3akz_B*
Probab=98.65 E-value=3e-08 Score=99.56 Aligned_cols=94 Identities=17% Similarity=0.142 Sum_probs=73.2
Q ss_pred EEEccCCCCCCcCchhHHHHHHHHHHHHHHHHHcCCeEEEEcCCCCcChHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhc
Q 046127 92 VLTTPLYYVNAPPHMGSAYTTIAADAIARFQRLLGKKVIFITGTDEHGEKIAAAAADGGSSPSEHCDVVSQAYKTLWKDL 171 (345)
Q Consensus 92 ~I~~~~PypnG~LHIGHar~~i~~DvlaR~lr~~G~~V~~v~G~D~~G~~I~~~A~~~g~~p~~~~~~~~~~~~~~l~~l 171 (345)
+++.-.|.|||+|||||+|+++....+||- ..| .++.-+||.+.. .....+.+.|.++|+.|
T Consensus 26 v~~RFAPsPtG~LHiG~~rtal~n~l~Ar~--~~G---~filRieDtD~~-------------R~~~~~~~~I~~dL~wl 87 (488)
T 3afh_A 26 VRVRFAPSPTGHLHVGGARTALFNWMFARK--EGG---KFILRIEDTDTE-------------RSSREYEQQILESLRWC 87 (488)
T ss_dssp CEEEECCCCSSSCBHHHHHHHHHHHHHHHH--HTC---EEEECBCCCCTT-------------TCCHHHHHHHHHHHHHT
T ss_pred ceEEECCCCCCCccHHHHHHHHHHHHHHHH--cCC---EEEEEEeeCCcc-------------cccHHHHHHHHHHHHHc
Confidence 567778899999999999999998888883 344 455566666422 22456788899999999
Q ss_pred CcccCcc---------ccCCChhhHHHHHHHHHHHHhCCCeee
Q 046127 172 DIAYDKF---------IRTTEPKHEAIVKEFYSSVLANGDIYK 205 (345)
Q Consensus 172 gI~~D~f---------~~T~~~~~~~~v~~~~~~L~~kG~iy~ 205 (345)
||.+|.- ++.+ .+.+..++.+++|.++|.+|.
T Consensus 88 Gl~wDe~~~~gG~~gp~~QS--er~~~y~~~~~~L~~~G~aY~ 128 (488)
T 3afh_A 88 GLDWDEGPDIGGDFGPYRQS--ERLEIYREYAEKLVEDKRAYY 128 (488)
T ss_dssp TCCCSBBTTTBCTTCCCBGG--GCHHHHHHHHHHHHHTTSEEE
T ss_pred CCCCCcCCCCCCCCCCeeee--CCHHHHHHHHHHHHHcCCeEe
Confidence 9999963 3333 566788999999999999996
No 34
>4gri_A Glutamate--tRNA ligase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, aminoacyl-tRNA synthetase; HET: GLU; 2.60A {Borrelia burgdorferi}
Probab=98.65 E-value=2.4e-08 Score=101.03 Aligned_cols=96 Identities=17% Similarity=0.173 Sum_probs=72.2
Q ss_pred EEEccCCCCCCcCchhHHHHHHHHHHHHHHHHHcCCeEEEEcCCCCcChHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhc
Q 046127 92 VLTTPLYYVNAPPHMGSAYTTIAADAIARFQRLLGKKVIFITGTDEHGEKIAAAAADGGSSPSEHCDVVSQAYKTLWKDL 171 (345)
Q Consensus 92 ~I~~~~PypnG~LHIGHar~~i~~DvlaR~lr~~G~~V~~v~G~D~~G~~I~~~A~~~g~~p~~~~~~~~~~~~~~l~~l 171 (345)
+.|.-+|.|||+|||||+|++++...+|| +..| .|+.-+||.+. ......+.+.|.++|+.|
T Consensus 25 vrtRFAPsPtG~LHiG~artAl~n~~~Ar--~~~G---~fiLRieDtD~-------------~R~~~~~~~~I~~~L~wl 86 (512)
T 4gri_A 25 TRVRYAPSPTGLQHIGGIRTALFNYFFAK--SCGG---KFLLRIEDTDQ-------------SRYSPEAENDLYSSLKWL 86 (512)
T ss_dssp CEEEECCCSSSCCBHHHHHHHHHHHHHHH--HTTC---EEEECBCCCCT-------------TSCCHHHHHHHHHHHHHH
T ss_pred eeEEeCcCCCCcccHHHHHHHHHHHHHHH--HcCC---EEEEEeCcCCC-------------CcCCHHHHHHHHHHHHHc
Confidence 56677889999999999999999999998 4455 35556666542 122345788899999999
Q ss_pred CcccCcccc-------CCChhhHHHHHHHHHHHHhCCCeee
Q 046127 172 DIAYDKFIR-------TTEPKHEAIVKEFYSSVLANGDIYK 205 (345)
Q Consensus 172 gI~~D~f~~-------T~~~~~~~~v~~~~~~L~~kG~iy~ 205 (345)
||.+|.-+. ...+.+.+.-++...+|+++|.+|.
T Consensus 87 Gl~wDe~p~~~g~~~py~QS~r~~~Y~~~~~~L~~~G~aY~ 127 (512)
T 4gri_A 87 GISFDEGPVVGGDYAPYVQSQRSAIYKQYAKYLIESGHAYY 127 (512)
T ss_dssp TCCCSBBTTTBCTTCCCBGGGCHHHHHHHHHHHHHTTSEEE
T ss_pred CCCCCcCCccCCCCCCccccchHHHHHHHHHHHHHcCCccc
Confidence 999995221 1233566777888999999999995
No 35
>1j09_A Glutamyl-tRNA synthetase; glurs-ATP-Glu complex, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; HET: GLU ATP; 1.80A {Thermus thermophilus} SCOP: a.97.1.1 c.26.1.1 PDB: 1n75_A* 1n77_A* 1n78_A* 2cuz_A* 2cv0_A* 2cv1_A* 2cv2_A* 2dxi_A* 1g59_A 1gln_A
Probab=98.57 E-value=4.9e-08 Score=97.61 Aligned_cols=96 Identities=22% Similarity=0.273 Sum_probs=73.2
Q ss_pred EEEccCCCCCCcCchhHHHHHHHHHHHHHHHHHcCCeEEEEcCCCCcChHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhc
Q 046127 92 VLTTPLYYVNAPPHMGSAYTTIAADAIARFQRLLGKKVIFITGTDEHGEKIAAAAADGGSSPSEHCDVVSQAYKTLWKDL 171 (345)
Q Consensus 92 ~I~~~~PypnG~LHIGHar~~i~~DvlaR~lr~~G~~V~~v~G~D~~G~~I~~~A~~~g~~p~~~~~~~~~~~~~~l~~l 171 (345)
+++.-+|.|||+|||||+|+++....+|| ...| .++.-+||.+.. .....+.+.|.++|+.|
T Consensus 2 v~~RFaPsPtG~LHiG~~rtal~n~l~Ar--~~~G---~filRieDtD~~-------------R~~~~~~~~I~~dl~wl 63 (468)
T 1j09_A 2 VVTRIAPSPTGDPHVGTAYIALFNYAWAR--RNGG---RFIVRIEDTDRA-------------RYVPGAEERILAALKWL 63 (468)
T ss_dssp CEEEECCCCSSSCBHHHHHHHHHHHHHHH--HTTC---EEEECBCCCCTT-------------SCCTTHHHHHHHHHHHT
T ss_pred ceEEeCCCCCCCccHHHHHHHHHHHHHHH--HcCC---EEEEEeCcCCCc-------------ccChHHHHHHHHHHHHc
Confidence 35667889999999999999999998888 3344 466667766432 12345788999999999
Q ss_pred CcccCccc-------cCCChhhHHHHHHHHHHHHhCCCeee
Q 046127 172 DIAYDKFI-------RTTEPKHEAIVKEFYSSVLANGDIYK 205 (345)
Q Consensus 172 gI~~D~f~-------~T~~~~~~~~v~~~~~~L~~kG~iy~ 205 (345)
|+.+|.-+ -...+.+.+...+.+.+|.++|.+|.
T Consensus 64 Gl~wd~~~~~gG~~gp~~QS~r~~~y~~~~~~L~~~G~aY~ 104 (468)
T 1j09_A 64 GLSYDEGPDVGGPHGPYRQSERLPLYQKYAEELLKRGWAYR 104 (468)
T ss_dssp TCCCSBBTTTBCTTCCCBGGGCHHHHHHHHHHHHHHTSEEE
T ss_pred CCCCCCCCCCCCCCCCeeccCCHHHHHHHHHHHHHcCCeEE
Confidence 99999642 11233677888899999999999995
No 36
>2ja2_A Glutamyl-tRNA synthetase; non-discriminating glutamyl-tRNA aminoacylation, protein biosynthesis, aminoacyl-tRNA synthetase, ligase; 1.65A {Mycobacterium tuberculosis} PDB: 3pny_A 3pnv_A
Probab=98.54 E-value=8.6e-08 Score=96.41 Aligned_cols=94 Identities=20% Similarity=0.274 Sum_probs=73.3
Q ss_pred EEEccCCCCCCcCchhHHHHHHHHHHHHHHHHHcCCeEEEEcCCCCcChHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhc
Q 046127 92 VLTTPLYYVNAPPHMGSAYTTIAADAIARFQRLLGKKVIFITGTDEHGEKIAAAAADGGSSPSEHCDVVSQAYKTLWKDL 171 (345)
Q Consensus 92 ~I~~~~PypnG~LHIGHar~~i~~DvlaR~lr~~G~~V~~v~G~D~~G~~I~~~A~~~g~~p~~~~~~~~~~~~~~l~~l 171 (345)
+++.-.|.|||+|||||+|+++....+|| ...|. |+.-+||.+ +......+.+.|.++|+.|
T Consensus 7 vr~RFAPsPTG~LHiG~~rtAL~n~l~Ar--~~gG~---fiLRieDtD-------------~~R~~~~~~~~I~~~L~wl 68 (498)
T 2ja2_A 7 VRVRFCPSPTGTPHVGLVRTALFNWAYAR--HTGGT---FVFRIEDTD-------------AQRDSEESYLALLDALRWL 68 (498)
T ss_dssp CEEEECCCSSSSCBHHHHHHHHHHHHHHH--HHTCE---EEECBCCCC-------------TTTCCHHHHHHHHHHHHHH
T ss_pred eeEEECcCCCCCccHHHHHHHHHHHHHHH--HcCCE---EEEEECcCC-------------CcccChHHHHHHHHHHHHc
Confidence 56677789999999999999999999999 45563 444555552 2223446788999999999
Q ss_pred CcccCc---------cccCCChhhHHHHHHHHHHHHhCCCeee
Q 046127 172 DIAYDK---------FIRTTEPKHEAIVKEFYSSVLANGDIYK 205 (345)
Q Consensus 172 gI~~D~---------f~~T~~~~~~~~v~~~~~~L~~kG~iy~ 205 (345)
|+.+|. .++ .+.+.+.-++...+|.++|.+|.
T Consensus 69 Gl~wDegp~~gG~~~~~~--QS~r~~~y~~~~~~L~~~g~aY~ 109 (498)
T 2ja2_A 69 GLDWDEGPEVGGPYGPYR--QSQRAEIYRDVLARLLAAGEAYH 109 (498)
T ss_dssp TCCCSBBTTTBCTTCCCB--GGGCHHHHHHHHHHHHHTTSEEE
T ss_pred CCCcCCCcCcCCCCCCee--eecCHHHHHHHHHHHHHcCCeEE
Confidence 999996 333 33577788889999999999994
No 37
>4arc_A Leucine--tRNA ligase; ligase-RNA complex, nucleotide-binding, protein biosynthesis I aminoacyl-tRNA synthetase, ATP-binding; 2.00A {Escherichia coli} PDB: 4aq7_A 4ari_A* 4as1_A*
Probab=97.43 E-value=4.2e-05 Score=81.83 Aligned_cols=18 Identities=50% Similarity=1.104 Sum_probs=16.8
Q ss_pred CCCCcccccCCCCCCcccC
Q 046127 284 GLRDFSISRASVDWGIPVP 302 (345)
Q Consensus 284 gL~D~~ISR~~~~WGIpvP 302 (345)
.|+||||||| .+||+|||
T Consensus 436 rlrDW~iSRQ-RyWG~PIP 453 (880)
T 4arc_A 436 RLRDWGVSRQ-RYWGAPIP 453 (880)
T ss_dssp SCCCEECEES-CSSSCBCC
T ss_pred Ecccceeeee-eccCCcce
Confidence 5999999999 59999999
No 38
>3jxe_A Tryptophanyl-tRNA synthetase; adenosine triphosphate, rossmann fold, crystallography, X-RAY, P. horikoshii, aminoacyl-tRNA synthetase; HET: TYM; 3.00A {Pyrococcus horikoshii}
Probab=95.76 E-value=0.034 Score=54.05 Aligned_cols=93 Identities=14% Similarity=0.052 Sum_probs=54.9
Q ss_pred CCEEEEccCCCCCCcCchhHHHHHHHHHHHHHHHHHcCCeEEEEcCCCCcChHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Q 046127 89 DPFVLTTPLYYVNAPPHMGSAYTTIAADAIARFQRLLGKKVIFITGTDEHGEKIAAAAADGGSSPSEHCDVVSQAYKTLW 168 (345)
Q Consensus 89 ~~~~I~~~~PypnG~LHIGHar~~i~~DvlaR~lr~~G~~V~~v~G~D~~G~~I~~~A~~~g~~p~~~~~~~~~~~~~~l 168 (345)
+++.|.++. -|+|.|||||..+++. ..+++...|++|++..+ |.|+.-. ..+.+++++ .++...+.+++
T Consensus 72 ~p~~i~sG~-~PTG~lHLGh~v~~~~---~~~lQ~~~g~~~~i~Ia-D~ha~~~-----~~~~~~e~i-~~~~~~~~~~~ 140 (392)
T 3jxe_A 72 RGFFLYTGR-GPSGPMHIGHIIPFFA---TKWLQEKFGVNLYIQIT-DDEKFLF-----KENLTFDDT-KRWAYDNILDI 140 (392)
T ss_dssp CCCEEEEEE-CCSSCCBHHHHHHHHH---HHHHHHHHCCEEEEEEC-HHHHHHH-----CSSCCHHHH-HHHHHHHHHHH
T ss_pred CCeEEEecc-CCCCchhHHHHHHHHH---HHHHHHhcCCceEEEec-chHHhhc-----CCCCCHHHH-HHHHHHHHHHH
Confidence 444444444 3569999999876642 23344447999988776 4442211 123566654 44455777788
Q ss_pred hhcCcccC---ccccCCChhhHHHHHH
Q 046127 169 KDLDIAYD---KFIRTTEPKHEAIVKE 192 (345)
Q Consensus 169 ~~lgI~~D---~f~~T~~~~~~~~v~~ 192 (345)
.++|++.+ .|....-+.|...+..
T Consensus 141 lA~GlDp~kt~i~~qS~~~~~~~~~~~ 167 (392)
T 3jxe_A 141 IAVGFDPDKTFIFQNSEFTKIYEMAIP 167 (392)
T ss_dssp HTTCCCTTSEEEEETTTSTHHHHHHHH
T ss_pred HHhCcCccceEEEECchhHHHHHHHHH
Confidence 89999987 2333333445555443
No 39
>2cyb_A Tyrosyl-tRNA synthetase; rossmann-fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: TYR; 1.80A {Archaeoglobus fulgidus}
Probab=95.75 E-value=0.039 Score=52.15 Aligned_cols=66 Identities=17% Similarity=0.185 Sum_probs=42.0
Q ss_pred CCCCcCchhHHHHHHHHHHHHHHHHHcCCeEEEEcCCCCcChHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhcCcccC
Q 046127 99 YVNAPPHMGSAYTTIAADAIARFQRLLGKKVIFITGTDEHGEKIAAAAADGGSSPSEHCDVVSQAYKTLWKDLDIAYD 176 (345)
Q Consensus 99 ypnG~LHIGHar~~i~~DvlaR~lr~~G~~V~~v~G~D~~G~~I~~~A~~~g~~p~~~~~~~~~~~~~~l~~lgI~~D 176 (345)
-|||+|||||+... -.+.+++ ..|+++++..|- .|+.-. . ..++++ +..+...+.+++.++|+++|
T Consensus 40 ~PTg~lHlG~l~~l---~~~~~lq-~~g~~~~~~i~D-~~a~~~-----d-~~~~~~-i~~~~~~~~~~~~a~Gldp~ 105 (323)
T 2cyb_A 40 EPSGEIHLGHMMTV---QKLMDLQ-EAGFEIIVLLAD-IHAYLN-----E-KGTFEE-IAEVADYNKKVFIALGLDES 105 (323)
T ss_dssp CCCSCCBHHHHHHH---HHHHHHH-HTTCEEEEEECH-HHHHHT-----T-CCCHHH-HHHHHHHHHHHHHHTTCCTT
T ss_pred CCCCcchHHHHHHH---HHHHHHH-HCCCcEEEEECC-ceeEcC-----C-CCCHHH-HHHHHHHHHHHHHHhCCCcc
Confidence 46799999996432 2444544 458888775542 121100 1 125554 56677889999999999987
No 40
>3tzl_A Tryptophanyl-tRNA synthetase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta structure; HET: ADP TRP; 2.15A {Campylobacter jejuni subsp} SCOP: c.26.1.0 PDB: 3m5w_A*
Probab=95.57 E-value=0.011 Score=55.94 Aligned_cols=65 Identities=12% Similarity=0.157 Sum_probs=42.8
Q ss_pred CCCCcCchhHHHHHHHHHHHHHHHHHcCCeEEEEcCCCCcChHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhcCcccC
Q 046127 99 YVNAPPHMGSAYTTIAADAIARFQRLLGKKVIFITGTDEHGEKIAAAAADGGSSPSEHCDVVSQAYKTLWKDLDIAYD 176 (345)
Q Consensus 99 ypnG~LHIGHar~~i~~DvlaR~lr~~G~~V~~v~G~D~~G~~I~~~A~~~g~~p~~~~~~~~~~~~~~l~~lgI~~D 176 (345)
-|||.|||||..+.+.. +.++++ |+++++..| |.|+.- ...+++++ .++...+..++.++|++.+
T Consensus 11 ~PTg~lHlG~~lg~l~~--~~~lQ~--g~~~~~~ia-D~ha~~-------~~~~~~~l-~~~~~~~~~~~lA~Gldp~ 75 (322)
T 3tzl_A 11 QPSGDLHIGNYFGAIKQ--MVDAQE--KSQMFMFIA-NYHAMT-------SSQDGEKL-KQNSLKAAAAFLSLGIDPQ 75 (322)
T ss_dssp CCSSCCBHHHHHHTHHH--HHHTTT--TSCCEEEEC-HHHHTT-------TCCCHHHH-HHHHHHHHHHHHHTTCCTT
T ss_pred CCCccccHHHHHHHHHH--HHHHhc--CCCEEEEEe-cCeeec-------CCCCHHHH-HHHHHHHHHHHHHcCCCcc
Confidence 46799999998765543 456655 999987665 444311 12245543 4455677788888999987
No 41
>1i6k_A TRPRS, tryptophanyl-tRNA synthetase; class I tRNA synthetase, AARS, induced FIT, ligase; HET: TYM; 1.72A {Geobacillus stearothermophilus} SCOP: c.26.1.1 PDB: 1i6l_A* 1i6m_A* 1m83_A* 1mau_A* 1maw_A* 1mb2_A* 2ov4_A* 3fhj_A* 3fi0_A* 1d2r_A 3u1v_A
Probab=95.04 E-value=0.03 Score=53.13 Aligned_cols=64 Identities=14% Similarity=0.172 Sum_probs=41.6
Q ss_pred CCCcCchhHHHHHHHHHHHHHHHHHcCCeEEEEcCCCCcChHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhcCcccC
Q 046127 100 VNAPPHMGSAYTTIAADAIARFQRLLGKKVIFITGTDEHGEKIAAAAADGGSSPSEHCDVVSQAYKTLWKDLDIAYD 176 (345)
Q Consensus 100 pnG~LHIGHar~~i~~DvlaR~lr~~G~~V~~v~G~D~~G~~I~~~A~~~g~~p~~~~~~~~~~~~~~l~~lgI~~D 176 (345)
|||.|||||..+++.. +.+++. |+++++..| |.|+.-. ..++++ +.++...+.+++.++|++++
T Consensus 10 PTG~lHlGn~vg~l~~--~~~lQ~--g~~~~~~Ia-D~ha~~~-------~~~~e~-i~~~~~~~~~~~la~Gldp~ 73 (328)
T 1i6k_A 10 PSGVITIGNYIGALRQ--FVELQH--EYNCYFCIV-DQHAITV-------WQDPHE-LRQNIRRLAALYLAVGIDPT 73 (328)
T ss_dssp CCSCCBHHHHHHTHHH--HHHHTT--TSEEEEEEC-HHHHTTS-------CCCHHH-HHHHHHHHHHHHHHTTCCTT
T ss_pred CCCcccHHHHHHHHHH--HHHHHc--CCcEEEEEe-CceeecC-------CCCHHH-HHHHHHHHHHHHHHhCCChh
Confidence 5599999998877632 224433 999877554 3232111 135654 44556688899999999987
No 42
>3a04_A Tryptophanyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, nucleotide-binding, protein biosynthesis; 1.97A {Aeropyrum pernix} PDB: 3a05_A*
Probab=95.00 E-value=0.07 Score=51.51 Aligned_cols=77 Identities=16% Similarity=0.111 Sum_probs=49.2
Q ss_pred CCCEEEEccCCCCCCcCchhHHHHHHHHHHHHHHHHHcCCeEEEEcCCCCcChHHHHHHHhCCCCHHHHHHHHHHHHHHH
Q 046127 88 ADPFVLTTPLYYVNAPPHMGSAYTTIAADAIARFQRLLGKKVIFITGTDEHGEKIAAAAADGGSSPSEHCDVVSQAYKTL 167 (345)
Q Consensus 88 ~~~~~I~~~~PypnG~LHIGHar~~i~~DvlaR~lr~~G~~V~~v~G~D~~G~~I~~~A~~~g~~p~~~~~~~~~~~~~~ 167 (345)
+++++|.++. -|+|.|||||..++. -.+.+...|++|++.. .|.|.. .-......+........+..+
T Consensus 68 gk~~~v~sG~-~PTG~lHLGhyv~~~----~~~~lq~~~~~~~~~I-aD~ha~------t~~~~~~~e~~r~~~~~~~~~ 135 (372)
T 3a04_A 68 GERVAVLTGF-MPSGKFHFGHKLTVD----QLIYLQKNGFKVFVAI-ADAEAF------AVRRIGREEAVRIAVEEYIAN 135 (372)
T ss_dssp TCCCEEEEEE-CCCSCCBHHHHHHHH----HHHHHHHTTCEEEEEE-CHHHHH------HTTCCCHHHHHHHHHHTTHHH
T ss_pred CCCCEEEeCc-CCCcHhHHHHHHHHH----HHHHHHhCCCeEEEEE-ecchhh------ccCCCCCHHHHHHHHHHHHHH
Confidence 4566666655 578999999976443 2344455699997655 344421 112233445556666777788
Q ss_pred HhhcCcccC
Q 046127 168 WKDLDIAYD 176 (345)
Q Consensus 168 l~~lgI~~D 176 (345)
+-++|++++
T Consensus 136 ~lA~GlDP~ 144 (372)
T 3a04_A 136 MIALGLDPK 144 (372)
T ss_dssp HHHHTCCTT
T ss_pred HHHcCCChH
Confidence 889999987
No 43
>2dlc_X Tyrosyl-tRNA synthetase, cytoplasmic; tyrrs, ligase-tRNA complex; HET: 2MG OMG M2G PSU 6IA 5MC 5MU 1MA YMP; 2.40A {Saccharomyces cerevisiae}
Probab=94.91 E-value=0.064 Score=52.15 Aligned_cols=72 Identities=14% Similarity=0.153 Sum_probs=40.7
Q ss_pred CCCCcCchhHHHHHHHHHHHHHHHHHcCCeEEEEcCCCCcChHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhcCcccCc
Q 046127 99 YVNAPPHMGSAYTTIAADAIARFQRLLGKKVIFITGTDEHGEKIAAAAADGGSSPSEHCDVVSQAYKTLWKDLDIAYDK 177 (345)
Q Consensus 99 ypnG~LHIGHar~~i~~DvlaR~lr~~G~~V~~v~G~D~~G~~I~~~A~~~g~~p~~~~~~~~~~~~~~l~~lgI~~D~ 177 (345)
-|||.|||||.++++. +.++++ .|+++++..+- .|+.-.. ....-...+..+..+...+...|.++|+++|.
T Consensus 47 ~PTG~LHlG~~~~al~---~~~~~q-~g~~~ii~I~D-~ha~t~~--~~~~~e~~~~~~~~~~~~i~~~l~a~Gldp~k 118 (394)
T 2dlc_X 47 APTGRPHCGYFVPMTK---LADFLK-AGCEVTVLLAD-LHAFLDN--MKAPLEVVNYRAKYYELTIKAILRSINVPIEK 118 (394)
T ss_dssp CCCSCCBGGGHHHHHH---HHHHHH-TTCEEEEEECH-HHHHHTT--TSSCTTHHHHHHHHHHHHHHHHHHHTTCCCTT
T ss_pred CCCCCccHHHHHHHHH---HHHHHH-cCCcEEEEEcC-CccccCC--CCCcHHHHHHHHHHHHHHHHHHHHHcCCChhH
Confidence 3479999999877665 344444 68888765542 1210000 00000011233344556677788999999883
No 44
>3hzr_A Tryptophanyl-tRNA synthetase; APO tRNA-ligase, structural genomics, medical structural GEN pathogenic protozoa, MSGPP, ligase; 3.00A {Entamoeba histolytica}
Probab=94.81 E-value=0.097 Score=50.76 Aligned_cols=77 Identities=13% Similarity=0.079 Sum_probs=48.7
Q ss_pred CCCEEEEccCCCCCCcCchhHHHHHHHHHHHHHHHHHcCCeEEEEcCCCCcChHHHHHHHhCCCCHHHHHHHHHHHHHHH
Q 046127 88 ADPFVLTTPLYYVNAPPHMGSAYTTIAADAIARFQRLLGKKVIFITGTDEHGEKIAAAAADGGSSPSEHCDVVSQAYKTL 167 (345)
Q Consensus 88 ~~~~~I~~~~PypnG~LHIGHar~~i~~DvlaR~lr~~G~~V~~v~G~D~~G~~I~~~A~~~g~~p~~~~~~~~~~~~~~ 167 (345)
++++.|.++. -|+|+|||||..++ ..+.++++..|..|.++.+-+ + +......+++++. ++...+.++
T Consensus 80 ~~~~~vysG~-~PTG~lHLGh~v~~---~~~~~lQ~~~g~~v~i~I~D~-~------a~~~r~~~~e~i~-~~~~~~~~~ 147 (386)
T 3hzr_A 80 KKPTFIFIQK-YPQKEVALEEYITL---EFARYLQDAFNIQVIIQILDD-I------KVLNREATINEAS-KMSNDLMKY 147 (386)
T ss_dssp TCCEEEEEEE-CCCSSCBGGGHHHH---HHHHHHHHHHCCEEEEEECHH-H------HHHTTSCCHHHHH-HHHHHHHHH
T ss_pred CCCeEEEecc-CCCCCccHHHHHHH---HHHHHHHHhcCCeEEEEeCch-H------HhhcCCCCHHHHH-HHHHHHHHH
Confidence 4556666655 57899999996554 344456666688887773321 1 1112226777644 444577788
Q ss_pred HhhcCcccC
Q 046127 168 WKDLDIAYD 176 (345)
Q Consensus 168 l~~lgI~~D 176 (345)
+-++|++.+
T Consensus 148 ~lA~GlDp~ 156 (386)
T 3hzr_A 148 ILAFGFNED 156 (386)
T ss_dssp HHHTCCCGG
T ss_pred HHHcCCCCc
Confidence 889999887
No 45
>1n3l_A Tyrosyl-tRNA synthetase; rossmann fold AS catalytic domain, unique anticodon recognit domain, dimer, ligase; 1.18A {Homo sapiens} SCOP: c.26.1.1 PDB: 1q11_A*
Probab=94.79 E-value=0.084 Score=50.93 Aligned_cols=66 Identities=17% Similarity=0.196 Sum_probs=38.8
Q ss_pred CCCcCchhHHHHHHHHHHHHHHHHHcCCeEEEEcCCCCcChHHHHHHHhCCCCHHHH---HHHHHHH-HHHHHhhcCccc
Q 046127 100 VNAPPHMGSAYTTIAADAIARFQRLLGKKVIFITGTDEHGEKIAAAAADGGSSPSEH---CDVVSQA-YKTLWKDLDIAY 175 (345)
Q Consensus 100 pnG~LHIGHar~~i~~DvlaR~lr~~G~~V~~v~G~D~~G~~I~~~A~~~g~~p~~~---~~~~~~~-~~~~l~~lgI~~ 175 (345)
|||.|||||..+++. +.++++ .|+++++..|- .|+.-. .-.++.++ ...+.+. +...|.++|+++
T Consensus 44 PTG~lHlG~~~~~l~---~~~~~q-~g~~~i~~I~D-~ha~t~------~~~~~~~l~~~~~~~~~~~i~~~lla~Gldp 112 (372)
T 1n3l_A 44 TTGKPHVAYFVPMSK---IADFLK-AGCEVTILFAD-LHAYLD------NMKAPWELLELRVSYYENVIKAMLESIGVPL 112 (372)
T ss_dssp CSSCCBGGGHHHHHH---HHHHHH-TTCEEEEEECH-HHHHHT------TTTSCHHHHHHHHHHHHHHHHHHHHHHTCCC
T ss_pred CCCcccHHHHHHHHH---HHHHHH-CCCCEEEEEcC-CceeeC------CCCCHHHHHHHHHHHHHHHHHHHHHHcCCCh
Confidence 679999999877665 455555 68888775542 111000 00123332 3334444 555678899998
Q ss_pred C
Q 046127 176 D 176 (345)
Q Consensus 176 D 176 (345)
+
T Consensus 113 ~ 113 (372)
T 1n3l_A 113 E 113 (372)
T ss_dssp T
T ss_pred h
Confidence 7
No 46
>2g36_A Tryptophanyl-tRNA synthetase; TM0492, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI, ligase; HET: TRP; 2.50A {Thermotoga maritima}
Probab=94.34 E-value=0.096 Score=49.92 Aligned_cols=73 Identities=11% Similarity=0.106 Sum_probs=44.4
Q ss_pred EEEEccCCCCCCcCchhHHHHHHHHHHHHHHHHHcCCeEEEEcCCCCcChHHHHHHHhCCCCHHHHHHHHHHHHHHHHhh
Q 046127 91 FVLTTPLYYVNAPPHMGSAYTTIAADAIARFQRLLGKKVIFITGTDEHGEKIAAAAADGGSSPSEHCDVVSQAYKTLWKD 170 (345)
Q Consensus 91 ~~I~~~~PypnG~LHIGHar~~i~~DvlaR~lr~~G~~V~~v~G~D~~G~~I~~~A~~~g~~p~~~~~~~~~~~~~~l~~ 170 (345)
.+.+... |||.|||||..+++. -+.++ ...|++|++.. .|.|+.-. . ..+|++ ..+......+++.+
T Consensus 14 ~v~~G~~--PTG~lHLGn~~g~l~--~~~~l-Q~~G~~~~~~I-aD~ha~t~----~--~~dp~~-~~~~~~~~~~~~lA 80 (340)
T 2g36_A 14 RILSGMR--PTGKLHIGHLVGALE--NWVKL-QEEGNECFYFV-ADWHALTT----H--YDDVSK-LKEYTRDLVRGFLA 80 (340)
T ss_dssp EEEEEEC--CCSSCBHHHHHTHHH--HHHHH-HHTTCEEEEEE-CHHHHHHH----H--TTCCTT-HHHHHHHHHHHHHH
T ss_pred eEEEeeC--CCCcccHHhHHHHHH--HHHHH-HHCCCCEEEEE-ecceeecC----C--CCCHHH-HHHHHHHHHHHHHH
Confidence 4444454 559999999887653 33333 45799998876 33343221 1 234443 33445556667888
Q ss_pred cCcccC
Q 046127 171 LDIAYD 176 (345)
Q Consensus 171 lgI~~D 176 (345)
+|++++
T Consensus 81 ~Gldp~ 86 (340)
T 2g36_A 81 CGIDPE 86 (340)
T ss_dssp TTCCTT
T ss_pred hCCChh
Confidence 999987
No 47
>2cya_A Tyrosyl-tRNA synthetase; tyrrs, aminoacylation, structural genomics, NPPSFA, national on protein structural and functional analyses; 2.20A {Aeropyrum pernix}
Probab=94.23 E-value=0.12 Score=49.80 Aligned_cols=68 Identities=7% Similarity=0.050 Sum_probs=42.5
Q ss_pred CCCCcCchhHHHHHHHHHHHHHHHHHcCCeEEEEcCCCCcChHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhcCcccC
Q 046127 99 YVNAPPHMGSAYTTIAADAIARFQRLLGKKVIFITGTDEHGEKIAAAAADGGSSPSEHCDVVSQAYKTLWKDLDIAYD 176 (345)
Q Consensus 99 ypnG~LHIGHar~~i~~DvlaR~lr~~G~~V~~v~G~D~~G~~I~~~A~~~g~~p~~~~~~~~~~~~~~l~~lgI~~D 176 (345)
-|||.||||| . +..-.+.++++ .|+++++..| |.|+.-. ...|.+++++. ++...+.+++.++|++.+
T Consensus 43 ~PTg~lHlG~-l--~~l~~~~~lQ~-~G~~~~~~ia-D~~a~~~----~ps~~~~e~i~-~~~~~~~~~~la~G~dp~ 110 (364)
T 2cya_A 43 EPSGVAHIGW-L--VWMYKVKDLVE-AGVDFSVLEA-TWHAYIN----DKLGGDMDLIR-AAARIVRRVMEAAGVPVE 110 (364)
T ss_dssp CCCSSCBTHH-H--HHHHHHHHHHH-TTCEEEEEEC-HHHHHHT----TGGGGCHHHHH-HHHHHHHHHHHHTTCCGG
T ss_pred CCCCCccHhH-H--HHHHHHHHHHH-CCCCEEEEEe-CcchhhC----CCCCCCHHHHH-HHHHHHHHHHHHhCCCcc
Confidence 3569999999 3 33344555554 5999887665 3332111 11234565544 445678889999999987
No 48
>2zp1_A Tyrosyl-tRNA synthetase; tRNA synthetases class I, ligase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, nucleotide-binding; HET: IYR; 1.70A {Methanocaldococcus jannaschii} PDB: 1zh6_A* 1j1u_A* 1u7d_A 2q1g_A* 2pxh_A* 1zh0_A* 2q1i_A* 2ag6_A* 3qe4_A* 3d6u_A* 3d6v_A* 1u7x_A 3n2y_A* 2hgz_A*
Probab=94.00 E-value=0.2 Score=47.16 Aligned_cols=67 Identities=13% Similarity=0.278 Sum_probs=41.2
Q ss_pred CCCcCchhHHHHHHHHHHHHHHHHHcCCeEEEEcCCCCcChHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhcCcccCccc
Q 046127 100 VNAPPHMGSAYTTIAADAIARFQRLLGKKVIFITGTDEHGEKIAAAAADGGSSPSEHCDVVSQAYKTLWKDLDIAYDKFI 179 (345)
Q Consensus 100 pnG~LHIGHar~~i~~DvlaR~lr~~G~~V~~v~G~D~~G~~I~~~A~~~g~~p~~~~~~~~~~~~~~l~~lgI~~D~f~ 179 (345)
|||.||||| . +..-.+.++++ .|+++++..|- .|+.-. . ..++++ +.++...+.+++.++|++ ..|+
T Consensus 37 PTg~lHlGh-l--~~l~~~~~lQ~-~g~~~~~~i~D-~~a~~~-----~-~~~~e~-i~~~~~~~~~~~~a~G~d-~~~~ 103 (314)
T 2zp1_A 37 PSGKIHLGH-Y--LQIKKMIDLQN-AGFDIIILLAD-LAAYLN-----Q-KGELDE-IRKIGDYNKKVFEAMGLK-AKYV 103 (314)
T ss_dssp CCSSCBHHH-H--HHHHHHHHHHH-TTEEEEEEECH-HHHHHT-----T-CCCHHH-HHHHHHHHHHHHHHTTCC-CEEE
T ss_pred CCCCcchhh-H--HHHHHHHHHHH-CCCCEEEEEec-ceEecC-----C-CCCHHH-HHHHHHHHHHHHHhcCCC-eEEE
Confidence 569999999 3 23344455554 58998876642 222110 1 124554 455568899999999998 5454
No 49
>3prh_A Tryptophanyl-tRNA synthetase; TRPRS, protein biosynthesis, translation, class I tRNA synth rossman fold, high motif, KMSKS motif; 2.80A {Bacillus subtilis}
Probab=93.85 E-value=0.088 Score=51.08 Aligned_cols=83 Identities=13% Similarity=0.177 Sum_probs=49.9
Q ss_pred EEccCCCCCCcCchhHHHHHHHHHHHHHHHHHcCCeEEEEcCCCCcChHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhcC
Q 046127 93 LTTPLYYVNAPPHMGSAYTTIAADAIARFQRLLGKKVIFITGTDEHGEKIAAAAADGGSSPSEHCDVVSQAYKTLWKDLD 172 (345)
Q Consensus 93 I~~~~PypnG~LHIGHar~~i~~DvlaR~lr~~G~~V~~v~G~D~~G~~I~~~A~~~g~~p~~~~~~~~~~~~~~l~~lg 172 (345)
|.++. -|+|.|||||..+++.. +.+++ .|++|++..+ |.|..- ...+++++ .++...+..++.+.|
T Consensus 38 i~sG~-~PTG~lHLGhyvGal~~--~~~LQ--~~~~~~~~Ia-D~hAlt-------~~~~~~~l-r~~~~~~aa~~lA~G 103 (388)
T 3prh_A 38 IFSGI-QPSGSVTLGNYIGAMKQ--FVELQ--HDYNSYFCIV-DQHAIT-------VPQDRLEL-RKNIRNLAALYLAVG 103 (388)
T ss_dssp EEEEE-CCCSCCBHHHHHHTHHH--HHHTT--TTSEEEEEEC-HHHHTT-------SCCCHHHH-HHHHHHHHHHHHHTT
T ss_pred EEEee-CCCCcchHHHHHHHHHH--HHHHH--ccCcEEEEEe-cceeee-------cCCCHHHH-HHHHHHHHHHHHHhC
Confidence 44443 56799999998776542 22333 3999877653 444321 13466654 444557788888999
Q ss_pred cccC---ccccCCChhhHHH
Q 046127 173 IAYD---KFIRTTEPKHEAI 189 (345)
Q Consensus 173 I~~D---~f~~T~~~~~~~~ 189 (345)
++.+ .|....-+.|.+.
T Consensus 104 lDp~kt~if~qS~v~~~~el 123 (388)
T 3prh_A 104 LDPEKATLFIQSEVPAHAQA 123 (388)
T ss_dssp CCTTTEEEEEGGGSTHHHHH
T ss_pred CChhHeEEEecccccchHHH
Confidence 9987 3333333445443
No 50
>3foc_A Tryptophanyl-tRNA synthetase; structural genomics, giardiasi aminoacyl-tRNA synthetase, ligase; 2.09A {Giardia lamblia atcc 50803}
Probab=93.78 E-value=0.3 Score=48.26 Aligned_cols=78 Identities=13% Similarity=0.014 Sum_probs=49.1
Q ss_pred CCCEEEEccCCCCC-CcCchhHHHHHHHHHHHHHHHHHcCCeEEEEcCCCCcChHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 046127 88 ADPFVLTTPLYYVN-APPHMGSAYTTIAADAIARFQRLLGKKVIFITGTDEHGEKIAAAAADGGSSPSEHCDVVSQAYKT 166 (345)
Q Consensus 88 ~~~~~I~~~~Pypn-G~LHIGHar~~i~~DvlaR~lr~~G~~V~~v~G~D~~G~~I~~~A~~~g~~p~~~~~~~~~~~~~ 166 (345)
++++.|.++. -|| |.|||||..++ ..+.+++..-|..+.+.. |++ .....+...+++++ .++...+.+
T Consensus 89 g~p~~vytG~-dPTagsLHLGH~v~~---~~l~~lQ~~~g~~v~I~I-----gD~-~a~~~r~~lt~E~I-~~n~~~~~~ 157 (451)
T 3foc_A 89 GHPIYIYTGR-GPSSGALHLGHLLPF---IFTKYLQDAFKCYVVIQI-----TDD-EKFLRNRSLSYAEV-DSYTRENIK 157 (451)
T ss_dssp TCCEEEEEEE-CCCSSCCBHHHHHHH---HHHHHHHHHHTCEEEEEE-----CHH-HHHHHCTTCCHHHH-HHHHHHHHH
T ss_pred CCCeEEEecC-CCCCCCccHHHHHHH---HHHHHHHHccCceEEEEe-----eCc-HHhhcccCCCHHHH-HHHHHHHHH
Confidence 4567777666 577 88999996544 344556666577777653 333 11112235677654 445557778
Q ss_pred HHhhcCcccC
Q 046127 167 LWKDLDIAYD 176 (345)
Q Consensus 167 ~l~~lgI~~D 176 (345)
++-++|++.+
T Consensus 158 ~~lA~GlDpe 167 (451)
T 3foc_A 158 DIIACGFDPD 167 (451)
T ss_dssp HHHTTTCCGG
T ss_pred HHHHcCCCCC
Confidence 8888998876
No 51
>1yi8_B Tryptophanyl-tRNA synthetase; ligase; HET: TRP; 2.10A {Deinococcus radiodurans} PDB: 1yia_B* 1yid_B* 2a4m_A*
Probab=93.68 E-value=0.088 Score=50.41 Aligned_cols=74 Identities=15% Similarity=0.096 Sum_probs=44.5
Q ss_pred CCEEEEccCCCCCCcCchhHHHHHHHHHHHHHHHHHcCCeEEEEcCCCCcChHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Q 046127 89 DPFVLTTPLYYVNAPPHMGSAYTTIAADAIARFQRLLGKKVIFITGTDEHGEKIAAAAADGGSSPSEHCDVVSQAYKTLW 168 (345)
Q Consensus 89 ~~~~I~~~~PypnG~LHIGHar~~i~~DvlaR~lr~~G~~V~~v~G~D~~G~~I~~~A~~~g~~p~~~~~~~~~~~~~~l 168 (345)
+..+.+..- |||.|||||..+++. -+.++++. +++++.. .|.|+.-.. ..+++++ .++...+.+++
T Consensus 22 ~~~vysG~~--PTG~lHLGn~~g~l~--~~~~lQ~~--~~~~~~I-aD~ha~~~~------~~~~e~i-~~~~~~~~~~~ 87 (351)
T 1yi8_B 22 RPRVLTGDR--PTGALHLGHLAGSLQ--NRVRLQDE--AELFVLL-ADVQALTDH------FDRPEQV-RENVLAVALDY 87 (351)
T ss_dssp CSEEEEEEC--CSSCCBHHHHHHTHH--HHHHHTSS--SEEEEEE-CHHHHHHHH------TTCHHHH-HHHHHHHHHHH
T ss_pred CcEEEEeeC--CCCCccHHHHHHHHH--HHHHHHHh--CCeEEEE-ecchhhcCC------CCCHHHH-HHHHHHHHHHH
Confidence 344444444 469999999887652 22334333 7776554 344443221 3566654 44555677888
Q ss_pred hhcCcccC
Q 046127 169 KDLDIAYD 176 (345)
Q Consensus 169 ~~lgI~~D 176 (345)
.++|++.+
T Consensus 88 la~Gldp~ 95 (351)
T 1yi8_B 88 LAAGLDPQ 95 (351)
T ss_dssp HHHTCCTT
T ss_pred HHhCCChh
Confidence 89999987
No 52
>3vgj_A Tyrosyl-tRNA synthetase, putative; tyrrs, ligase; HET: YAP; 2.21A {Plasmodium falciparum}
Probab=93.49 E-value=0.096 Score=50.57 Aligned_cols=69 Identities=12% Similarity=0.178 Sum_probs=41.5
Q ss_pred CCCCcCchhHHHHHHHHHHHHHHHHHcCCeEEEEcCCCCcChHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhcCcccC
Q 046127 99 YVNAPPHMGSAYTTIAADAIARFQRLLGKKVIFITGTDEHGEKIAAAAADGGSSPSEHCDVVSQAYKTLWKDLDIAYD 176 (345)
Q Consensus 99 ypnG~LHIGHar~~i~~DvlaR~lr~~G~~V~~v~G~D~~G~~I~~~A~~~g~~p~~~~~~~~~~~~~~l~~lgI~~D 176 (345)
-|+|.|||||. .+..-.+.+++ ..|++|++..| |.|+.- ....+.+++++ ..+...+.+.+.++|++.+
T Consensus 64 ~PTg~lHlG~g--vl~~~~~~~lQ-~~G~~~~~lIa-D~ha~i----~d~~~~~~~~i-~~~~~~~~~~~~a~G~dp~ 132 (373)
T 3vgj_A 64 EPSGRMHIAQG--LLKSIIVNKLT-SNGCTFIFWIA-DWFAHL----NNKMSGDLKKI-KKVGSYFIEVWKSCGMNME 132 (373)
T ss_dssp CCCSSCBHHHH--HHHHHHHHHHH-TTTCEEEEEEC-HHHHHH----TTGGGGCHHHH-HHHHHHHHHHHHHTTCCST
T ss_pred CCCCCceehhh--HHHHHHHHHHH-HCCCcEEEEEe-cceeEe----cCCCCCCHHHH-HHHHHHHHHHHHHcCCChh
Confidence 35689999992 22222355554 46999888765 434321 01223445443 4445666788999999987
No 53
>1r6t_A Tryptophanyl-tRNA synthetase; class IC tRNA synthetase, rossmann fold catalytical domain, recognition domain, bound Trp-AMP, ligase; HET: TYM; 2.10A {Homo sapiens} SCOP: a.16.1.3 c.26.1.1 PDB: 2azx_A* 2quh_A* 2qui_A* 2quj_A* 2quk_A
Probab=93.38 E-value=0.13 Score=51.20 Aligned_cols=77 Identities=12% Similarity=0.018 Sum_probs=49.0
Q ss_pred CCCEEEEccCCCCC-CcCchhHHHHHHHHHHHHHHHHHcCCeEEEEcCCCCcChHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 046127 88 ADPFVLTTPLYYVN-APPHMGSAYTTIAADAIARFQRLLGKKVIFITGTDEHGEKIAAAAADGGSSPSEHCDVVSQAYKT 166 (345)
Q Consensus 88 ~~~~~I~~~~Pypn-G~LHIGHar~~i~~DvlaR~lr~~G~~V~~v~G~D~~G~~I~~~A~~~g~~p~~~~~~~~~~~~~ 166 (345)
++++.|.++. -|| |.|||||..+++. +.+++...|+++++..|-. |+.-- . ..++++ +.++...+..
T Consensus 153 ~~~~~vy~G~-dPTag~LHLGh~v~~~~---~~~lQ~~~g~~~iilI~D~-~a~ig----d--~lt~e~-i~~n~~~~~~ 220 (477)
T 1r6t_A 153 KKPFYLYTGR-GPSSEAMHVGHLIPFIF---TKWLQDVFNVPLVIQMTDD-EKYLW----K--DLTLDQ-AYGDAVENAK 220 (477)
T ss_dssp TCCEEEEEEE-CCCTTCCBGGGHHHHHH---HHHHHHHHTCCEEEEECHH-HHHHH----S--SCCHHH-HHHHHHHHHH
T ss_pred CCCcEEEEcc-cCCCCCccHHHHHHHHH---HHHHHHHhCCcEEEEEecc-eeeec----C--CCCHHH-HHHHHHHHHH
Confidence 4567766666 577 8999999887652 3355555799987766532 21111 0 356655 4455555677
Q ss_pred HHhhcCcccC
Q 046127 167 LWKDLDIAYD 176 (345)
Q Consensus 167 ~l~~lgI~~D 176 (345)
++-++|++.+
T Consensus 221 ~~lA~GlDp~ 230 (477)
T 1r6t_A 221 DIIACGFDIN 230 (477)
T ss_dssp HHHTTCCCTT
T ss_pred HHHHhCCCCC
Confidence 7888998876
No 54
>2el7_A Tryptophanyl-tRNA synthetase; aminoacyl-tRNA synthetase, translation, structural GEN NPPSFA; 2.50A {Thermus thermophilus}
Probab=93.37 E-value=0.16 Score=48.25 Aligned_cols=67 Identities=10% Similarity=0.012 Sum_probs=40.6
Q ss_pred CCCcCchhHHHHHHHHHHHHHHHHHcC-CeEEEEcCCCCcChHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhcCcccC
Q 046127 100 VNAPPHMGSAYTTIAADAIARFQRLLG-KKVIFITGTDEHGEKIAAAAADGGSSPSEHCDVVSQAYKTLWKDLDIAYD 176 (345)
Q Consensus 100 pnG~LHIGHar~~i~~DvlaR~lr~~G-~~V~~v~G~D~~G~~I~~~A~~~g~~p~~~~~~~~~~~~~~l~~lgI~~D 176 (345)
|||+|||||..+++ --+.++++ .| ++|++..|- .|+.-. .+ +.+++. ..++...+..++.++|++.+
T Consensus 10 PTg~lHlGh~~g~l--~~~~~lQ~-~G~~~~~~~IaD-~~a~~~----~~-~~~~~~-i~~~~~~~~~~~la~Gldp~ 77 (337)
T 2el7_A 10 PSGEIHIGNYLGAI--KQWVAIGE-KLGRDAFFCIVD-YHALTN----PL-AYDPST-LAQRTFEAALVNIAAGLDPE 77 (337)
T ss_dssp SCSCCBHHHHHTHH--HHHHHHHH-HHGGGEEEEECG-GGGGGS----TT-TSCHHH-HHHHHHHHHHHHHHHTCCTT
T ss_pred CCCcccHHHHHHHH--HHHHHHHh-cCCCCEEEEEeC-ceeecC----CC-CCCHHH-HHHHHHHHHHHHHHhCCChh
Confidence 56999999988775 23345554 46 888765542 233211 00 244543 44455566778888999987
No 55
>3hv0_A Tryptophanyl-tRNA synthetase; tRNA-ligase, ATP-binding, aminoacyl-tRNA synthetase, ligase, nucleotide-binding; HET: TRP; 2.42A {Cryptosporidium parvum iowa II} SCOP: c.26.1.0
Probab=93.17 E-value=0.29 Score=47.52 Aligned_cols=78 Identities=9% Similarity=-0.029 Sum_probs=47.6
Q ss_pred CCCEEEEccCCCCC-CcCchhHHHHHHHHHHHHHHHHHcCCeEEEEcCCCCcChHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 046127 88 ADPFVLTTPLYYVN-APPHMGSAYTTIAADAIARFQRLLGKKVIFITGTDEHGEKIAAAAADGGSSPSEHCDVVSQAYKT 166 (345)
Q Consensus 88 ~~~~~I~~~~Pypn-G~LHIGHar~~i~~DvlaR~lr~~G~~V~~v~G~D~~G~~I~~~A~~~g~~p~~~~~~~~~~~~~ 166 (345)
++++.|.++. -|+ |.|||||..+++ .+.++++.-|..|.+..| ++- ........+++++ .++...+.+
T Consensus 72 g~~~~vy~G~-~PTa~~lHlGh~v~~~---~~~~lQ~~~~~~v~i~I~-----D~~-~~~~r~~~~~e~i-~~~~~~~~~ 140 (393)
T 3hv0_A 72 GELFYLYTGR-GPSSESLHVGHLVPFL---FTKYLQDTFKVPLVIQLT-----DDE-KFIFKSNLTLEET-HNYAYENMK 140 (393)
T ss_dssp TCCCEEEEEE-CCSSSSCBSTTHHHHH---HHHHHHHHHCCCEEEEEC-----HHH-HHHHCTTCCHHHH-HHHHHHHHH
T ss_pred CCCeEEEeCC-CCCCCCccHHHHHHHH---HHHHHHHhcCCCeEeecc-----ChH-HHhhccCCCHHHH-HHHHHHHHH
Confidence 3445555554 467 689999965444 455677766777766433 221 1112235676654 445557778
Q ss_pred HHhhcCcccC
Q 046127 167 LWKDLDIAYD 176 (345)
Q Consensus 167 ~l~~lgI~~D 176 (345)
++.++|++.+
T Consensus 141 ~~lA~GlDp~ 150 (393)
T 3hv0_A 141 DIIACGFDPE 150 (393)
T ss_dssp HHHTTCCCTT
T ss_pred HHHHcCCCCc
Confidence 8888999876
No 56
>3sz3_A Tryptophanyl-tRNA synthetase; structural genomics, center for structural genomics of infec diseases, csgid, rossmann fold; HET: TRP; 1.50A {Vibrio cholerae o1 biovar el tor}
Probab=93.12 E-value=0.12 Score=49.36 Aligned_cols=71 Identities=10% Similarity=0.080 Sum_probs=44.8
Q ss_pred EEEEccCCCCCCcCchhHHHHHHHHHHHHHHHHHcCCeEEEEcCCCCcChHHHHHHHhCCCCHHHHHHHHHHHHHHHHhh
Q 046127 91 FVLTTPLYYVNAPPHMGSAYTTIAADAIARFQRLLGKKVIFITGTDEHGEKIAAAAADGGSSPSEHCDVVSQAYKTLWKD 170 (345)
Q Consensus 91 ~~I~~~~PypnG~LHIGHar~~i~~DvlaR~lr~~G~~V~~v~G~D~~G~~I~~~A~~~g~~p~~~~~~~~~~~~~~l~~ 170 (345)
.+.+.. -|+|+|||||..+++. -+.+++. |+++++..+ |.|..- ...++++ ..++...+..++.+
T Consensus 8 ~v~sG~--~PTG~lHLGhy~g~l~--~~~~lQ~--~~~~~~~ia-D~ha~~-------~~~~~~~-~~~~~~~~~~~~lA 72 (341)
T 3sz3_A 8 IVLSGV--QPSGELSIGNYLGALR--QWQQMQD--DYDCQYCVV-DLHAIT-------VRQDPQA-LHEATLDALAICLA 72 (341)
T ss_dssp EEEEEE--CSSSCCBHHHHHHTGG--GHHHHHH--HSEEEEEEC-HHHHTT-------SCCCHHH-HHHHHHHHHHHHHH
T ss_pred EEEeCc--CCCCcccHHHHHHHHH--HHHHHHh--cCeEEEEEe-cceeEc-------CCCCHHH-HHHHHHHHHHHHHH
Confidence 344444 3669999999887662 2345554 588776544 444321 1246654 45555678888899
Q ss_pred cCcccC
Q 046127 171 LDIAYD 176 (345)
Q Consensus 171 lgI~~D 176 (345)
.|++.+
T Consensus 73 ~GlDp~ 78 (341)
T 3sz3_A 73 VGVDPK 78 (341)
T ss_dssp TTCCTT
T ss_pred cCCChh
Confidence 999987
No 57
>2ip1_A Tryptophanyl-tRNA synthetase; rossmann fold, structural genomics, PSI-2, protein structure initiative; HET: PG4; 1.80A {Saccharomyces cerevisiae} PDB: 3kt0_A* 3kt3_A* 3kt6_A* 3kt8_A*
Probab=92.90 E-value=0.18 Score=49.55 Aligned_cols=77 Identities=10% Similarity=0.063 Sum_probs=47.8
Q ss_pred CCEEEEccCCCCC-CcCchhHHHHHHHHHHHHHHHHHcCCeEEEEcCCCCcChHHHHHHHhCCCCHHHHHHHHHHHHHHH
Q 046127 89 DPFVLTTPLYYVN-APPHMGSAYTTIAADAIARFQRLLGKKVIFITGTDEHGEKIAAAAADGGSSPSEHCDVVSQAYKTL 167 (345)
Q Consensus 89 ~~~~I~~~~Pypn-G~LHIGHar~~i~~DvlaR~lr~~G~~V~~v~G~D~~G~~I~~~A~~~g~~p~~~~~~~~~~~~~~ 167 (345)
+++.|.++. -|| |.|||||..+.+. +.+++...|+++++..| |.|+.- -....+++. +.++...+..+
T Consensus 101 ~~~~vy~G~-dPTag~LHLGh~v~~~~---l~~lQ~~~g~~~i~lI~-D~ta~l-----~~~~~t~e~-i~~~~~~~~~~ 169 (432)
T 2ip1_A 101 KPFFLYTGR-GPSSDSMHLGHMIPFVF---TKWLQEVFDVPLVIELT-DDEKFL-----FKHKLTIND-VKNFARENAKD 169 (432)
T ss_dssp CCCEEEEEE-CCCSSCCBGGGHHHHHH---HHHHHHHHTCCEEEEEC-HHHHHH-----HCTTCCHHH-HHHHHHHHHHH
T ss_pred CCeEEEEee-cCCCCCccHHHHHHHHH---HHHHHHHcCCeEEEEEe-ccccee-----CCCCCCHHH-HHHHHHHHHHH
Confidence 445555554 467 8999999876542 44566557998887776 322211 011255554 45555566777
Q ss_pred HhhcCcccC
Q 046127 168 WKDLDIAYD 176 (345)
Q Consensus 168 l~~lgI~~D 176 (345)
+.++|++.+
T Consensus 170 ~lA~GlDp~ 178 (432)
T 2ip1_A 170 IIAVGFDPK 178 (432)
T ss_dssp HHTTTCCGG
T ss_pred HHHhCCCCC
Confidence 888998876
No 58
>1r6u_A Tryptophanyl-tRNA synthetase; class IC tRNA synthetase, rossmann fold catalytic domain, AN recognition domain, bound Trp-AMP, ligase; HET: TYM; 2.00A {Homo sapiens} SCOP: c.26.1.1 PDB: 1ulh_A 2dr2_A* 2ake_A* 1o5t_A
Probab=92.75 E-value=0.19 Score=49.51 Aligned_cols=77 Identities=10% Similarity=0.009 Sum_probs=48.7
Q ss_pred CCCEEEEccCCCCC-CcCchhHHHHHHHHHHHHHHHHHcCCeEEEEcCCCCcChHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 046127 88 ADPFVLTTPLYYVN-APPHMGSAYTTIAADAIARFQRLLGKKVIFITGTDEHGEKIAAAAADGGSSPSEHCDVVSQAYKT 166 (345)
Q Consensus 88 ~~~~~I~~~~Pypn-G~LHIGHar~~i~~DvlaR~lr~~G~~V~~v~G~D~~G~~I~~~A~~~g~~p~~~~~~~~~~~~~ 166 (345)
++++.|.++. -|| |.|||||..+.+. +.+++...|+++++..|- .++.-- . ..++++ +.++...+..
T Consensus 106 ~~~~~vy~G~-dPTag~LHLGh~v~~~~---~~~lQ~~~G~~~iilIgD-~ta~ig----d--~lt~e~-i~~n~~~~~~ 173 (437)
T 1r6u_A 106 KKPFYLYTGR-GPSSEAMHVGHLIPFIF---TKWLQDVFNVPLVIQMTD-DEKYLW----K--DLTLDQ-AYGDAVENAK 173 (437)
T ss_dssp TCCEEEEEEE-CCCSSCCBHHHHHHHHH---HHHHHHHHTCCEEEEECH-HHHHHH----S--SCCHHH-HHHHHHHHHH
T ss_pred CCCcEEEEcc-cCCCCCccHHHHHHHHH---HHHHHHHhCCcEEEEEec-ceeeec----C--CCCHHH-HHHHHHHHHH
Confidence 4566666665 577 8999999886552 445555579988776653 222111 0 456655 4445555677
Q ss_pred HHhhcCcccC
Q 046127 167 LWKDLDIAYD 176 (345)
Q Consensus 167 ~l~~lgI~~D 176 (345)
++.++|++.+
T Consensus 174 ~~lA~GlDp~ 183 (437)
T 1r6u_A 174 DIIACGFDIN 183 (437)
T ss_dssp HHHTTTCCGG
T ss_pred HHHHhCCCcc
Confidence 7888898876
No 59
>3p0j_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, tyrrs, pseudod translation, ATP-binding, nucleotide-binding, ligase; HET: TYE; 2.89A {Leishmania major} PDB: 3p0i_A* 3p0h_A*
Probab=92.72 E-value=0.19 Score=52.26 Aligned_cols=77 Identities=13% Similarity=0.160 Sum_probs=45.7
Q ss_pred CEEEEccCCCCCCcCchhHHHHHHHHHHHHHHHHHcCCeEEEEcCCCCcChHHHHHHHhCCCCHHHHHHHHHHHHHHHHh
Q 046127 90 PFVLTTPLYYVNAPPHMGSAYTTIAADAIARFQRLLGKKVIFITGTDEHGEKIAAAAADGGSSPSEHCDVVSQAYKTLWK 169 (345)
Q Consensus 90 ~~~I~~~~PypnG~LHIGHar~~i~~DvlaR~lr~~G~~V~~v~G~D~~G~~I~~~A~~~g~~p~~~~~~~~~~~~~~l~ 169 (345)
++.|.++. -|||.|||||. .+..-.+.+++ ..|++|++..| |.|+.-. ...+.++++ +..+...+.+++.
T Consensus 40 ~~~vy~G~-~PTg~lHLG~~--v~~~~~~~~lQ-~~G~~~~~lIa-D~ha~~~----d~~~~~~e~-i~~~~~~~~~~~l 109 (690)
T 3p0j_A 40 LIRCYDGF-EPSGRMHIAQG--IFKAVNVNKCT-AAGCEFVFWVA-DWFALMN----DKVGGELEK-IRIVGRYLIEVWK 109 (690)
T ss_dssp TEEEEEEE-CCCSCCBHHHH--HHHHHHHHHHH-HTTEEEEEEEC-CGGGGGG----CTTTTHHHH-HHHHHHHHHHHHH
T ss_pred CceEEeee-cCCCcchhHhh--HHHHHHHHHHH-HCCCcEEEEEe-eeEEEec----CCCcchHHH-HHHHHHHHHHHHH
Confidence 44444444 57799999992 12122244555 46999988766 5554311 112334444 3445566778899
Q ss_pred hcCcccC
Q 046127 170 DLDIAYD 176 (345)
Q Consensus 170 ~lgI~~D 176 (345)
++|++.+
T Consensus 110 A~GlDp~ 116 (690)
T 3p0j_A 110 AAGMDMD 116 (690)
T ss_dssp HTTCCGG
T ss_pred HcCCChH
Confidence 9999887
No 60
>3i05_A Tryptophanyl-tRNA synthetase; APO tRNA-ligase, ATP-binding, aminoacyl-tRNA synthetase, LIG nucleotide-binding, protein biosynthesis; 2.80A {Trypanosoma brucei} SCOP: c.26.1.0
Probab=92.65 E-value=0.38 Score=46.69 Aligned_cols=77 Identities=13% Similarity=0.021 Sum_probs=49.2
Q ss_pred CCCEEEEccCCCCCC-cCchhHHHHHHHHHHHHHHHHHcCCeEEEEcCCCCcChHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 046127 88 ADPFVLTTPLYYVNA-PPHMGSAYTTIAADAIARFQRLLGKKVIFITGTDEHGEKIAAAAADGGSSPSEHCDVVSQAYKT 166 (345)
Q Consensus 88 ~~~~~I~~~~PypnG-~LHIGHar~~i~~DvlaR~lr~~G~~V~~v~G~D~~G~~I~~~A~~~g~~p~~~~~~~~~~~~~ 166 (345)
++++.|.++. -|+| .|||||..++ ..+.++++.-|..|.++.|-+. ++.....+++++. ++...+.+
T Consensus 76 ~~~~~vy~G~-~PTg~~lHLGh~v~~---~~~~~lQ~~~~~~v~i~I~D~~-------~~l~~~~~~e~i~-~~~~~~~~ 143 (395)
T 3i05_A 76 GQPFYLYTGR-GPSSESMHMGHLIPF---MFTKWLQDSFRVPLVIQMTDDE-------KFYFRNIPMEQVE-AMTTENIK 143 (395)
T ss_dssp TCCEEEEEEE-CCCSSCCBGGGSHHH---HHHHHHHHHHTCCEEEEECHHH-------HHHHSCCCHHHHH-HHHHHHHH
T ss_pred CCCeEEEEee-cCCCccchHHHHHHH---HHHHHHHHhcCCcEEEEEcchH-------HHhcCCCCHHHHH-HHHHHHHH
Confidence 4556666665 5789 6999997543 4555566666887777643222 1222336776644 45557778
Q ss_pred HHhhcCcccC
Q 046127 167 LWKDLDIAYD 176 (345)
Q Consensus 167 ~l~~lgI~~D 176 (345)
++.++|++.+
T Consensus 144 ~~lA~GlDp~ 153 (395)
T 3i05_A 144 DIIAMGFDPE 153 (395)
T ss_dssp HHHTTTCCTT
T ss_pred HHHHcCCCCC
Confidence 8888998876
No 61
>2cyc_A Tyrosyl-tRNA synthetase; tyrosine, tyrrs, aminoacylation, structural genomics; HET: TYR; 2.20A {Pyrococcus horikoshii}
Probab=92.04 E-value=0.27 Score=47.39 Aligned_cols=70 Identities=17% Similarity=0.118 Sum_probs=39.9
Q ss_pred CCCCcCchhHHHHHHHHHHHHHHHHHcCCeEEEEcCCCCcChHHHHHHHhCCCCHHHHHHH----HHHHHHHHHhhcCcc
Q 046127 99 YVNAPPHMGSAYTTIAADAIARFQRLLGKKVIFITGTDEHGEKIAAAAADGGSSPSEHCDV----VSQAYKTLWKDLDIA 174 (345)
Q Consensus 99 ypnG~LHIGHar~~i~~DvlaR~lr~~G~~V~~v~G~D~~G~~I~~~A~~~g~~p~~~~~~----~~~~~~~~l~~lgI~ 174 (345)
-|||.|||||... ..-.+.++++ .|+++++..|- .|+.- ....|.+++++... +...+.+++.++|++
T Consensus 41 ~PTg~lHlG~yl~--~l~~~~~lQ~-~G~~~~~~iaD-~ha~~----~~~~g~~~e~i~~~~~~~~~~~~~~~~la~G~d 112 (375)
T 2cyc_A 41 EISGYIHLGTGLM--AGAKIADFQK-AGIKTRVFLAD-WHSWI----NDKLGGDLEVIQEVALKYFKVGMEKSIEVMGGD 112 (375)
T ss_dssp CCCSCCBHHHHHH--HHHHHHHHHH-TTCBCEEEECH-HHHHH----TTGGGGCHHHHHHHHHHTHHHHHHHHHHHTTCC
T ss_pred CCCCCcCchHHHH--HHHHHHHHHH-CCCcEEEEecC-cEEEc----CCCCCCCHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 3569999999432 2234455554 59988876542 22211 11223455544332 333344889999998
Q ss_pred cC
Q 046127 175 YD 176 (345)
Q Consensus 175 ~D 176 (345)
.+
T Consensus 113 p~ 114 (375)
T 2cyc_A 113 PK 114 (375)
T ss_dssp GG
T ss_pred cc
Confidence 87
No 62
>1jil_A Tyrrs, tyrosyl-tRNA synthetase; truncation, based inhibitor design, ligase; HET: 485; 2.20A {Staphylococcus aureus} SCOP: c.26.1.1 PDB: 1jij_A* 1jii_A* 1jik_A*
Probab=91.62 E-value=0.13 Score=50.37 Aligned_cols=71 Identities=15% Similarity=0.208 Sum_probs=40.7
Q ss_pred CCCCc-CchhHHHHHHHHHHHHHHHHHcCCeEEEEcCCCC--cChHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhcCccc
Q 046127 99 YVNAP-PHMGSAYTTIAADAIARFQRLLGKKVIFITGTDE--HGEKIAAAAADGGSSPSEHCDVVSQAYKTLWKDLDIAY 175 (345)
Q Consensus 99 ypnG~-LHIGHar~~i~~DvlaR~lr~~G~~V~~v~G~D~--~G~~I~~~A~~~g~~p~~~~~~~~~~~~~~l~~lgI~~ 175 (345)
-|||+ |||||..+ .-.+.+++ ..||++++..|-.+ .|.|--...++.-.+++++ .++...+++++.++ +++
T Consensus 40 dPTg~sLHlGh~v~---l~~~~~lQ-~~G~~~~~lIgd~ta~igdp~gk~~~R~~l~~e~i-~~n~~~~~~~~~~~-ld~ 113 (420)
T 1jil_A 40 DPTADSLHIGHLLP---FLTLRRFQ-EHGHRPIVLIGGGTGMIGDPSGKSEERVLQTEEQV-DKNIEGISKQMHNI-FEF 113 (420)
T ss_dssp CCSSSSCBHHHHHH---HHHHHHHH-HTTCEEEEEECTTGGGTCCCTTCSSCCCCCCHHHH-HHHHHHHHHHHHHH-SCC
T ss_pred CCCCCCccHHHHHH---HHHHHHHH-HCCCcEEEEEcCceeEecCCCccccccccCCHHHH-HHHHHHHHHHHHHH-hCC
Confidence 46699 99999653 34456665 46999988765322 2222111111222356654 45557777777666 655
No 63
>2j5b_A Tyrosyl-tRNA synthetase; ligase, protein biosynthesis, ATP-binding; HET: TYE; 2.20A {Acanthamoeba polyphaga mimivirus}
Probab=91.53 E-value=0.55 Score=44.75 Aligned_cols=75 Identities=11% Similarity=0.088 Sum_probs=44.5
Q ss_pred EEEEccCCCCCCcCchhHHHHHHHHHHHHHHHHHcCCeEEEEcCCCCcChHHHHHHHhCCCCHHHHHHHHHHHHHHHHhh
Q 046127 91 FVLTTPLYYVNAPPHMGSAYTTIAADAIARFQRLLGKKVIFITGTDEHGEKIAAAAADGGSSPSEHCDVVSQAYKTLWKD 170 (345)
Q Consensus 91 ~~I~~~~PypnG~LHIGHar~~i~~DvlaR~lr~~G~~V~~v~G~D~~G~~I~~~A~~~g~~p~~~~~~~~~~~~~~l~~ 170 (345)
.+.+..- |+|.|||||.. +..-.+.++++ .|+++++..|- .|+.- ....+.++++ +.++...+.+++.+
T Consensus 42 ~vy~G~~--PTg~lHlGhyl--~~l~~~~~lQ~-~G~~~~~~i~D-~~a~~----~~~~~~~~e~-i~~~~~~~~~~~la 110 (348)
T 2j5b_A 42 TAYNGFE--PSGRIHIAQAL--ITVMNTNNMIE-CGGQMIIYIAD-WFAKM----NLKMNGDINK-IRELGRYFIEVFKA 110 (348)
T ss_dssp EEEEEEC--CCSSCBHHHHH--HHHHHHHHHHH-TTEEEEEEECH-HHHHH----TTGGGGCHHH-HHHHHHHHHHHHHH
T ss_pred EEEeccC--CCCCCchhHHH--HHHHHHHHHHH-cCCcEEEEecc-chhhh----CCCCCCCHHH-HHHHHHHHHHHHHH
Confidence 3444443 55999999932 22344556654 59998876542 23211 1122345554 45566777888889
Q ss_pred cCcccC
Q 046127 171 LDIAYD 176 (345)
Q Consensus 171 lgI~~D 176 (345)
+|++.+
T Consensus 111 ~Gldp~ 116 (348)
T 2j5b_A 111 CGINLD 116 (348)
T ss_dssp TTCCGG
T ss_pred hcCCcc
Confidence 999987
No 64
>3tze_A Tryptophanyl-tRNA synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, amino acylation; HET: TRP; 2.60A {Encephalitozoon cuniculi}
Probab=91.45 E-value=0.72 Score=44.91 Aligned_cols=77 Identities=12% Similarity=0.030 Sum_probs=48.4
Q ss_pred CCCEEEEccCCCCCC-cCchhHHHHHHHHHHHHHHHHHcCCeEEEEcCCCCcChHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 046127 88 ADPFVLTTPLYYVNA-PPHMGSAYTTIAADAIARFQRLLGKKVIFITGTDEHGEKIAAAAADGGSSPSEHCDVVSQAYKT 166 (345)
Q Consensus 88 ~~~~~I~~~~PypnG-~LHIGHar~~i~~DvlaR~lr~~G~~V~~v~G~D~~G~~I~~~A~~~g~~p~~~~~~~~~~~~~ 166 (345)
++++.|.++. -|+| .|||||..++ ..+.++++.-|..+.+..| |.|. +. ....+++++ .++...+.+
T Consensus 99 ~~p~~vy~G~-~PTg~~lHLGh~v~~---~~~~~lQ~~~g~~~~i~Ia-D~~a--~l----~~~~~~e~i-~~~~~~~~~ 166 (406)
T 3tze_A 99 NRPFYLYTGR-GPSSKTMHIGHTIPF---LLCKYMQDAFKIRLVIQIT-DDEK--FL----WKSMRLEDA-MAYGRENIK 166 (406)
T ss_dssp TCCEEEEEEE-CCCSSCCBGGGHHHH---HHHHHHHHHHTCCEEEEEC-HHHH--HH----HSSCCHHHH-HHHHHHHHH
T ss_pred CCCeEEEEee-CCCCCcccHHHHHHH---HHHHHHHHhcCCcEEEEee-ChHH--Hc----CCCCCHHHH-HHHHHHHHH
Confidence 4566666665 5788 7999996554 3444466665887776533 3331 11 123566654 445567778
Q ss_pred HHhhcCcccC
Q 046127 167 LWKDLDIAYD 176 (345)
Q Consensus 167 ~l~~lgI~~D 176 (345)
++-++|++.+
T Consensus 167 ~~lA~GlDp~ 176 (406)
T 3tze_A 167 DIVTLGFDPK 176 (406)
T ss_dssp HHHTTTCCGG
T ss_pred HHHHcCCCcc
Confidence 8889999876
No 65
>3p0j_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, tyrrs, pseudod translation, ATP-binding, nucleotide-binding, ligase; HET: TYE; 2.89A {Leishmania major} PDB: 3p0i_A* 3p0h_A*
Probab=90.85 E-value=1.3 Score=45.93 Aligned_cols=68 Identities=12% Similarity=0.004 Sum_probs=44.3
Q ss_pred CCCcCchhHHHHHHHHHHHHHHHHH-cCCeEEEEcCCCCcChHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhcCccc
Q 046127 100 VNAPPHMGSAYTTIAADAIARFQRL-LGKKVIFITGTDEHGEKIAAAAADGGSSPSEHCDVVSQAYKTLWKDLDIAY 175 (345)
Q Consensus 100 pnG~LHIGHar~~i~~DvlaR~lr~-~G~~V~~v~G~D~~G~~I~~~A~~~g~~p~~~~~~~~~~~~~~l~~lgI~~ 175 (345)
++|.+||||+-+... ++..|++. -|++|.+..|-+ |+ .--.+.|.++++ +.++...+.+++..+|.+.
T Consensus 390 s~g~lHLGh~v~~~k--~l~~~~~~~~g~~v~ilIaD~-~A----~i~d~~g~~~e~-i~~~~~y~~~~~~alG~d~ 458 (690)
T 3p0j_A 390 ALLKVPLDVAEGMIK--VTKDFIAAHPEGTVTLVLPDW-SA----VASDEITGVEKD-ISAALQVNCALLKAYGLPS 458 (690)
T ss_dssp CCSSCBHHHHHHHHH--HHHHHHHHCSSCEEEEEECTT-HH----HHTTCTTCCHHH-HHHHHHHHHHHHHHHTCCT
T ss_pred CCCCcccchHHHHHH--HHHHHHHHcCCCeEEEEEecc-hh----hhCCCCCCCHHH-HHHHHHHHHHHHHhcCCCc
Confidence 779999999875432 35566655 378888777643 21 111233455544 5556678888999999874
No 66
>2yy5_A Tryptophanyl-tRNA synthetase; aminoaccyl tRNA synthetase, structural genomics, NPPSFA; HET: WSA; 2.55A {Mycoplasma pneumoniae}
Probab=90.63 E-value=0.75 Score=43.81 Aligned_cols=72 Identities=11% Similarity=0.128 Sum_probs=44.2
Q ss_pred CEEEEccCCCCCCcCchhHHHHHHHHHHHHHHHHHcCCeEEEEcCCCCcChHHHHHHHhCCCCHHHHHHHHHHHHHHHHh
Q 046127 90 PFVLTTPLYYVNAPPHMGSAYTTIAADAIARFQRLLGKKVIFITGTDEHGEKIAAAAADGGSSPSEHCDVVSQAYKTLWK 169 (345)
Q Consensus 90 ~~~I~~~~PypnG~LHIGHar~~i~~DvlaR~lr~~G~~V~~v~G~D~~G~~I~~~A~~~g~~p~~~~~~~~~~~~~~l~ 169 (345)
..+.+..- |||.|||||..+++.. +.+++. |+++++..+ |.|+.-. ..+|+++ .++...+.+++.
T Consensus 5 ~~i~sG~~--PTG~lHLGn~vg~l~~--~~~lQ~--~~~~~~~Ia-D~ha~~~-------~~d~~~i-~~~~~~~~~~~l 69 (348)
T 2yy5_A 5 KRALTGIQ--ASGKQHLGNYLGVMQS--LIELQE--QCQLFVFVA-DLHSITV-------DFQPQAL-KQNNFDLVRTLL 69 (348)
T ss_dssp CEEEEEEC--CCTTCBHHHHHHTGGG--HHHHHH--HSEEEEEEC-HHHHTTS-------CCCHHHH-HHHHHHHHHHHH
T ss_pred eEEEEeeC--CCCcccHHHHHHHHHH--HHHHHh--CCcEEEEEc-ChhhccC-------CCCHHHH-HHHHHHHHHHHH
Confidence 34445454 5599999998876622 224444 788876544 2232111 1456543 445667778889
Q ss_pred hcCcccC
Q 046127 170 DLDIAYD 176 (345)
Q Consensus 170 ~lgI~~D 176 (345)
++|++++
T Consensus 70 A~Gldp~ 76 (348)
T 2yy5_A 70 AVGLDPQ 76 (348)
T ss_dssp HTTCCTT
T ss_pred HhCCChh
Confidence 9999997
No 67
>3n9i_A Tryptophanyl-tRNA synthetase; tryptophan-tRNA ligase, csgid, structural genomics, niaid, center for structural genomics infectious diseases; 1.95A {Yersinia pestis} SCOP: c.26.1.1
Probab=90.51 E-value=0.43 Score=45.49 Aligned_cols=73 Identities=14% Similarity=0.139 Sum_probs=44.8
Q ss_pred CCEEEEccCCCCCCcCchhHHHHHHHHHHHHHHHHHcCCeEEEEcCCCCcChHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Q 046127 89 DPFVLTTPLYYVNAPPHMGSAYTTIAADAIARFQRLLGKKVIFITGTDEHGEKIAAAAADGGSSPSEHCDVVSQAYKTLW 168 (345)
Q Consensus 89 ~~~~I~~~~PypnG~LHIGHar~~i~~DvlaR~lr~~G~~V~~v~G~D~~G~~I~~~A~~~g~~p~~~~~~~~~~~~~~l 168 (345)
++.+.+..- |+|.|||||..+++.. +.+++ .++++++..+ |.|..- ...+|++ ..++...+.+++
T Consensus 15 ~~~i~sG~~--PTG~lHLGh~vg~l~~--~~~lQ--~~~~~~~~ia-D~hA~t-------~~~~~~~-~~~~~~~~~~~~ 79 (346)
T 3n9i_A 15 KPIVFSGAQ--PSGELTIGNYMGALRQ--WVQMQ--DDYDCIYCIV-DLHAIT-------ARQDPAL-LRKRTLDTLALY 79 (346)
T ss_dssp CCEEEEEEC--SCSCCBHHHHHHTHHH--HHTTT--TTSEEEEEEC-HHHHTT-------SCCCHHH-HHHHHHHHHHHH
T ss_pred CCEEEECcC--CCCcccHHHHHHHHHH--HHHHH--hhCcEEEEEe-cceeec-------CCCCHHH-HHHHHHHHHHHH
Confidence 445555554 5699999998766522 22333 3688776543 444321 1345654 444556778888
Q ss_pred hhcCcccC
Q 046127 169 KDLDIAYD 176 (345)
Q Consensus 169 ~~lgI~~D 176 (345)
.+.|++.+
T Consensus 80 lA~GlDp~ 87 (346)
T 3n9i_A 80 LACGIDPK 87 (346)
T ss_dssp HHHTCCTT
T ss_pred HHcCCCcc
Confidence 89999987
No 68
>2ts1_A Tyrosyl-tRNA synthetase; ligase (synthetase); 2.30A {Geobacillus stearothermophilus} SCOP: c.26.1.1 PDB: 3ts1_A* 1tyd_E* 1tya_E* 1tyc_A 1tyb_E* 4ts1_A* 1jh3_A
Probab=88.61 E-value=0.31 Score=47.69 Aligned_cols=67 Identities=18% Similarity=0.171 Sum_probs=37.4
Q ss_pred CCCCc-CchhHHHHHHHHHHHHHHHHHcCCeEEEEcCCCC--cChHHHHHHHhCCCCHHHHHHHHHHHHHHHHhh
Q 046127 99 YVNAP-PHMGSAYTTIAADAIARFQRLLGKKVIFITGTDE--HGEKIAAAAADGGSSPSEHCDVVSQAYKTLWKD 170 (345)
Q Consensus 99 ypnG~-LHIGHar~~i~~DvlaR~lr~~G~~V~~v~G~D~--~G~~I~~~A~~~g~~p~~~~~~~~~~~~~~l~~ 170 (345)
-|||+ |||||.. ..-.+.+++ ..||++++..|-.+ .|.|--...++.-.+++++ .++...+++++..
T Consensus 38 dPTg~sLHlGh~v---~l~~l~~lQ-~~G~~~i~lIgd~ta~igdpsgk~~~R~~l~~e~i-~~n~~~~~~q~~~ 107 (419)
T 2ts1_A 38 DPTADSLHIGHLA---TILTMRRFQ-QAGHRPIALVGGATGLIGDPSGKKSERTLNAKETV-EAWSARIKEQLGR 107 (419)
T ss_dssp CCSSSSCBGGGHH---HHHHHHHHH-HTTCEEEEEECTTGGGTCCCTTCSSCCCCCCHHHH-HHHHHHHHHHHTT
T ss_pred CCCCCCccHHHHH---HHHHHHHHH-HCCCcEEEEEcCceeEecCCCCccccccCCCHHHH-HHHHHHHHHHHHH
Confidence 46699 9999965 334456665 46999988765322 2322111112222356654 4455666665554
No 69
>1h3f_A Tyrosyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase; HET: TYE; 2.00A {Thermus thermophilus} SCOP: c.26.1.1 d.66.1.4 PDB: 1h3e_A*
Probab=87.77 E-value=1 Score=44.15 Aligned_cols=76 Identities=20% Similarity=0.255 Sum_probs=34.6
Q ss_pred EEEEccCCCCCCc-CchhHHHHHHHHHHHHHHHHHcCCeEEEEcCCCCcC---hHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 046127 91 FVLTTPLYYVNAP-PHMGSAYTTIAADAIARFQRLLGKKVIFITGTDEHG---EKIAAAAADGGSSPSEHCDVVSQAYKT 166 (345)
Q Consensus 91 ~~I~~~~PypnG~-LHIGHar~~i~~DvlaR~lr~~G~~V~~v~G~D~~G---~~I~~~A~~~g~~p~~~~~~~~~~~~~ 166 (345)
+.|.++. -|||+ |||||.. ..-.+.+++. .||++++..|- .|+ .|.-...++.-.++++ +.++...+..
T Consensus 38 ~~vy~G~-dPTg~sLHlGh~v---~l~~l~~lQ~-~G~~~i~lIgD-~ta~igdpsgk~~~R~~l~~e~-i~~n~~~~~~ 110 (432)
T 1h3f_A 38 LTVKLGA-DPTRPDLHLGHAV---VLRKMRQFQE-LGHKVVLIIGD-FTGMIGDPSGRSKTRPPLTLEE-TRENAKTYVA 110 (432)
T ss_dssp CEEEEEE-CTTCCSCBHHHHH---HHHHHHHHHH-TTCEEEEEECC-CC----------------------HHHHHHHHH
T ss_pred cEEEEcc-cCCCCCCchhhHH---HHHHHHHHHH-CCCCEEEEEcc-ceEEecCCCCcccccccCCHHH-HHHHHHHHHH
Confidence 3333333 46686 9999966 3455666654 59998876653 333 3322222222233343 3344455666
Q ss_pred HHhhcCcc
Q 046127 167 LWKDLDIA 174 (345)
Q Consensus 167 ~l~~lgI~ 174 (345)
++. -+++
T Consensus 111 ql~-~~ld 117 (432)
T 1h3f_A 111 QAG-KILR 117 (432)
T ss_dssp HHT-TTSC
T ss_pred HHH-HHhc
Confidence 554 4455
No 70
>1lko_A Rubrerythrin all-iron(II) form; reduced form, DIIRON, four-helix bundle, rubre like, electron transport; 1.63A {Desulfovibrio vulgaris} SCOP: a.25.1.1 g.41.5.1 PDB: 1dvb_A 1jyb_A 1b71_A 1lkm_A 1lkp_A 1qyb_A 1s2z_A 1s30_A 1ryt_A
Probab=87.17 E-value=0.37 Score=41.96 Aligned_cols=53 Identities=19% Similarity=0.327 Sum_probs=38.8
Q ss_pred ChhhHHHHHHHHHHHHhCCCeeecccCcccccCCCCccchhhhhcCCcCCCCCCC
Q 046127 183 EPKHEAIVKEFYSSVLANGDIYKADYEGLYCVNCEEYKDEKELLENQCCPIHLKP 237 (345)
Q Consensus 183 ~~~~~~~v~~~~~~L~~kG~iy~~~~~~~yc~~c~~~l~d~el~~~~~c~~~~~p 237 (345)
+..|......++.+|.......+.....|-|..||-.....++- ..||.||.|
T Consensus 128 E~ehe~~~~~~l~~l~~~~~~~~~~~~~~~C~~CG~~~~g~~~p--~~CP~C~~~ 180 (191)
T 1lko_A 128 EEFHEKRFLDFARNIKEGRVFLREQATKWRCRNCGYVHEGTGAP--ELCPACAHP 180 (191)
T ss_dssp HHHHHHHHHHHHHHHHHTCSSEEEEEEEEEETTTCCEEEEEECC--SBCTTTCCB
T ss_pred HHHHHHHHHHHHHhhhcccccccCCCceEEECCCCCEeeCCCCC--CCCCCCcCC
Confidence 45788888889888876544445556789999999766533332 389999987
No 71
>2yxn_A Tyrosyl-tRNA synthetase; tRNA synthetases class I, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: AZY; 1.80A {Escherichia coli str} PDB: 1wq3_A* 1wq4_A* 1x8x_A* 1vbn_A* 1vbm_A*
Probab=85.68 E-value=0.61 Score=43.94 Aligned_cols=32 Identities=28% Similarity=0.382 Sum_probs=22.4
Q ss_pred CCCCc-CchhHHHHHHHHHHHHHHHHHcCCeEEEEcC
Q 046127 99 YVNAP-PHMGSAYTTIAADAIARFQRLLGKKVIFITG 134 (345)
Q Consensus 99 ypnG~-LHIGHar~~i~~DvlaR~lr~~G~~V~~v~G 134 (345)
-|||+ |||||.. ..-.+.+++ ..|+++++..|
T Consensus 41 ~PTg~slHlGh~l---~l~~~~~lQ-~~g~~~~~~i~ 73 (322)
T 2yxn_A 41 DPTADSLHLGHLV---PLLCLKRFQ-QAGHKPVALVG 73 (322)
T ss_dssp CCSSSSCBHHHHH---HHHHHHHHH-HTTCEEEEEEC
T ss_pred cCCCCcccHHHHH---HHHHHHHHH-HcCCcEEEEEc
Confidence 46699 9999965 334455655 45999887665
No 72
>1y42_X Tyrosyl-tRNA synthetase, mitochondrial; CYT-18, tRNA ligase, group I intron; HET: TYR; 1.95A {Neurospora crassa} PDB: 2rkj_A
Probab=85.15 E-value=0.73 Score=44.66 Aligned_cols=32 Identities=22% Similarity=0.229 Sum_probs=22.7
Q ss_pred CCCCc-CchhHHHHHHHHHHHHHHHHHcCCeEEEEcC
Q 046127 99 YVNAP-PHMGSAYTTIAADAIARFQRLLGKKVIFITG 134 (345)
Q Consensus 99 ypnG~-LHIGHar~~i~~DvlaR~lr~~G~~V~~v~G 134 (345)
-|||+ |||||..+ .-.+.++++ .||++++..|
T Consensus 72 dPTg~sLHlGhlv~---l~~l~~lQ~-~G~~~~~lIg 104 (392)
T 1y42_X 72 DPTAPSLHVGHLLP---LMPLFWMYL-EGYKAFTLIG 104 (392)
T ss_dssp CCCSSSCBGGGHHH---HHHHHHHHH-HTCEEEEEEC
T ss_pred cCCCCCccHHHHHH---HHHHHHHHH-cCCcEEEEEc
Confidence 46699 99999763 334566664 4999888655
No 73
>2pid_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase, protein-substrate complex, ATP-BI ligase, mitochondrion, nucleotide-binding, protein biosynth; HET: YSA; 2.20A {Homo sapiens} PDB: 3zxi_A*
Probab=84.73 E-value=0.83 Score=43.67 Aligned_cols=38 Identities=24% Similarity=0.276 Sum_probs=24.4
Q ss_pred EEEEccCCCCCCc-CchhHHHHHHHHHHHHHHHHHcCCeEEEEcC
Q 046127 91 FVLTTPLYYVNAP-PHMGSAYTTIAADAIARFQRLLGKKVIFITG 134 (345)
Q Consensus 91 ~~I~~~~PypnG~-LHIGHar~~i~~DvlaR~lr~~G~~V~~v~G 134 (345)
.+.+.. -|||+ |||||..+ .-.+.++++ .|+++++..|
T Consensus 48 ~vy~G~--~PTg~sLHLGhl~~---l~~~~~lQ~-~G~~~~~lIa 86 (356)
T 2pid_A 48 TIYCGF--DPTADSLHVGHLLA---LLGLFHLQR-AGHNVIALVG 86 (356)
T ss_dssp EEEEEE--CCSSSSCBHHHHHH---HHHHHHHHH-TTCEEEEEEC
T ss_pred EEEEee--cCCCCcccHHHHHH---HHHHHHHHH-CCCcEEEEEc
Confidence 344444 46697 99999442 234666654 5999888665
No 74
>2jan_A Tyrosyl-tRNA synthetase; protein biosynthesis, aminoacyl-tRNA synthetase, tyrrs, ligase, tyrosine, RNA-binding, ATP-binding; 2.9A {Mycobacterium tuberculosis}
Probab=83.52 E-value=0.82 Score=44.89 Aligned_cols=32 Identities=34% Similarity=0.532 Sum_probs=22.4
Q ss_pred CCCCc-CchhHHHHHHHHHHHHHHHHHcCCeEEEEcC
Q 046127 99 YVNAP-PHMGSAYTTIAADAIARFQRLLGKKVIFITG 134 (345)
Q Consensus 99 ypnG~-LHIGHar~~i~~DvlaR~lr~~G~~V~~v~G 134 (345)
-|||+ |||||.. ..-.+.++++ .||++++..|
T Consensus 40 dPTg~sLHLGhlv---~l~~l~~lQ~-~G~~~i~lIg 72 (432)
T 2jan_A 40 DPTAPSLHAGHLV---PLLTLRRFQR-AGHRPIVLAG 72 (432)
T ss_dssp CCSSSSCBGGGHH---HHHHHHHHHH-TTCEEEEEEC
T ss_pred CCCCCCcCHHHHH---HHHHHHHHHH-CCCcEEEEEc
Confidence 46696 9999944 3334666664 6999988764
No 75
>3pwf_A Rubrerythrin; non heme iron peroxidases, oxidative stress, oxidoreductase; 1.64A {Pyrococcus furiosus} PDB: 3mps_A 3pza_A 3qvd_A 1nnq_A 2hr5_A
Probab=77.69 E-value=1.9 Score=36.71 Aligned_cols=51 Identities=18% Similarity=0.288 Sum_probs=37.2
Q ss_pred CChhhHHHHHHHHHHHHhCCCeeecccCcccccCCCCccchhhhhcCCcCCCCCCC
Q 046127 182 TEPKHEAIVKEFYSSVLANGDIYKADYEGLYCVNCEEYKDEKELLENQCCPIHLKP 237 (345)
Q Consensus 182 ~~~~~~~~v~~~~~~L~~kG~iy~~~~~~~yc~~c~~~l~d~el~~~~~c~~~~~p 237 (345)
.+..|.+..+.++..| ++|..+. ....|-|+.||-... .++ +..||.||.|
T Consensus 112 ~E~~H~~~~~~~l~~l-~~~~~~~-~~~~~~C~~CG~i~~-~~~--p~~CP~Cg~~ 162 (170)
T 3pwf_A 112 AEKIHAELYRKAKEKA-EKGEDIE-IKKVYICPICGYTAV-DEA--PEYCPVCGAP 162 (170)
T ss_dssp HHHHHHHHHHHHHHHH-TTTCCCC-CSCEEECTTTCCEEE-SCC--CSBCTTTCCB
T ss_pred HHHHHHHHHHHHHHHH-hcCCcCC-CCCeeEeCCCCCeeC-CCC--CCCCCCCCCC
Confidence 3567888888888876 5666663 456788999997665 233 3589999987
No 76
>3gdz_A Arginyl-tRNA synthetase; klebsiella pneumoniae subsp. pneumo 78578, structural genomics, PSI-2; HET: MSE; 2.20A {Klebsiella pneumoniae subsp}
Probab=76.69 E-value=0.48 Score=37.39 Aligned_cols=44 Identities=7% Similarity=-0.017 Sum_probs=34.5
Q ss_pred chHHHHHH----HHHHHhhchhcchhhccccccccccccc-cccccccccccccc
Q 046127 20 SLQKEFEE----MAARINYSIQNSLWLLNPLHSKATTHFR-NRLKFRQNLFSLSK 69 (345)
Q Consensus 20 ~~~k~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 69 (345)
+|+|.+++ ||++|+..+.....| +.++... |++||.+++.++..
T Consensus 49 ~lak~~~~~P~~iA~~i~~~l~~~~~i------~~vevagpGFINf~l~~~~~~~ 97 (109)
T 3gdz_A 49 AVAKKLGMAPRQLAEQVLSHLDLNGIA------NKVEIAGPGFINIFLDPAFLAD 97 (109)
T ss_dssp HHHHHTTSCHHHHHHHHHHHCCCTTTE------EEEEEETTTEEEEEECHHHHHH
T ss_pred HHHHHhCCCHHHHHHHHHHhcCcCCcE------eEEEEeCCCeEEEEECHHHHHH
Confidence 57888875 999999999877666 6677775 69999998765443
No 77
>1yuz_A Nigerythrin; rubrythrin, rubredoxin, hemerythrin, electron transfer, DIIR center, oxidoreductase; 1.40A {Desulfovibrio vulgaris subsp} SCOP: a.25.1.1 g.41.5.1 PDB: 1yv1_A 1yux_A
Probab=71.50 E-value=2.1 Score=37.50 Aligned_cols=47 Identities=21% Similarity=0.333 Sum_probs=31.6
Q ss_pred ChhhHHHHHHHHHHHHhCCCeeecccCcccccCCCCccchhhhhcCCcCCCCCCC
Q 046127 183 EPKHEAIVKEFYSSVLANGDIYKADYEGLYCVNCEEYKDEKELLENQCCPIHLKP 237 (345)
Q Consensus 183 ~~~~~~~v~~~~~~L~~kG~iy~~~~~~~yc~~c~~~l~d~el~~~~~c~~~~~p 237 (345)
+..|....+.++.+|. +| .+...|.|..||-.... ..+..||.|+.|
T Consensus 149 E~~H~~~~~~ll~~l~-~~----~~~~~~~C~~CG~i~~g---~~p~~CP~C~~~ 195 (202)
T 1yuz_A 149 ESVHAERYLAAYNDID-AP----DDDKFHLCPICGYIHKG---EDFEKCPICFRP 195 (202)
T ss_dssp HHHHHHHHHHHHHTTT-CC----CSCCEEECSSSCCEEES---SCCSBCTTTCCB
T ss_pred HHHHHHHHHHHHHHHh-cC----CCCcEEEECCCCCEEcC---cCCCCCCCCCCC
Confidence 3456666666666543 44 45578999999976553 233589999987
No 78
>2kdx_A HYPA, hydrogenase/urease nickel incorporation protein HYPA; metallochaperone, metal-binding, metal- binding protein; NMR {Helicobacter pylori}
Probab=69.35 E-value=13 Score=29.31 Aligned_cols=79 Identities=10% Similarity=0.136 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHHHhhcCcc-cC---ccccCCChhhHHHHHHHHHHHHhCCC-eee-------cccCcccccCCCCccchh
Q 046127 156 HCDVVSQAYKTLWKDLDIA-YD---KFIRTTEPKHEAIVKEFYSSVLANGD-IYK-------ADYEGLYCVNCEEYKDEK 223 (345)
Q Consensus 156 ~~~~~~~~~~~~l~~lgI~-~D---~f~~T~~~~~~~~v~~~~~~L~~kG~-iy~-------~~~~~~yc~~c~~~l~d~ 223 (345)
++....+.+.+..+.=|.. .. ..+-..+..+.+..+..|..+ ++|- +.+ .....|+|.+|+....-.
T Consensus 8 i~~~i~~~~~~~A~~~g~~~V~~V~l~IG~ls~v~~e~l~f~f~~~-~~gt~~~e~a~L~i~~~p~~~~C~~CG~~~e~~ 86 (119)
T 2kdx_A 8 VVSSLIALCEEHAKKNQAHKIERVVVGIGERSAMDKSLFVSAFETF-REESLVCKDAILDIVDEKVELECKDCSHVFKPN 86 (119)
T ss_dssp HHHHHHHHHHHHHHHTTCCCCCEEEEEEETTSCCCHHHHHHHHHHH-GGGCTTTSSCCEEEEEECCEEECSSSSCEECSC
T ss_pred HHHHHHHHHHHHHHHcCCCeEEEEEEEeehhccccHHHHHHHHHHH-HhCChhhcCcEEEEEeccceEEcCCCCCEEeCC
Confidence 5566666777766666653 22 122233445667777778777 4555 443 445689999999865543
Q ss_pred hhhcCC-cCCCCCCC
Q 046127 224 ELLENQ-CCPIHLKP 237 (345)
Q Consensus 224 el~~~~-~c~~~~~p 237 (345)
+. .. .||.||.+
T Consensus 87 ~~--~~~~CP~Cgs~ 99 (119)
T 2kdx_A 87 AL--DYGVCEKCHSK 99 (119)
T ss_dssp CS--TTCCCSSSSSC
T ss_pred CC--CCCcCccccCC
Confidence 32 24 79999987
No 79
>3a43_A HYPD, hydrogenase nickel incorporation protein HYPA; [NIFE] hydrogenase maturation, zinc-finger, nickel binding, metal-binding; HET: FME; 2.30A {Pyrococcus kodakaraensis} PDB: 3a44_A*
Probab=68.72 E-value=10 Score=31.00 Aligned_cols=81 Identities=17% Similarity=0.151 Sum_probs=51.5
Q ss_pred HHHHHHHHHHHHHhhcCcc-cC---ccccCCChhhHHHHHHHHHHHHhCCCeeec-------ccCcccccCCCCccchhh
Q 046127 156 HCDVVSQAYKTLWKDLDIA-YD---KFIRTTEPKHEAIVKEFYSSVLANGDIYKA-------DYEGLYCVNCEEYKDEKE 224 (345)
Q Consensus 156 ~~~~~~~~~~~~l~~lgI~-~D---~f~~T~~~~~~~~v~~~~~~L~~kG~iy~~-------~~~~~yc~~c~~~l~d~e 224 (345)
+++...+.+.+..+.-|.. .. ..+-..+..+.+..+..|..+ .+|-+.++ ....++|.+|+....-.+
T Consensus 6 ia~~iv~~v~~~A~~~g~~~V~~V~l~IG~ls~v~~e~l~faf~~~-~~gt~~e~A~L~i~~~p~~~~C~~CG~~~~~~~ 84 (139)
T 3a43_A 6 LADAIVRTVLDYAQREGASRVKAVRVVLGELQDVAEDIVKFAMEQL-FAGTIAEGAEIEFVEEEAVFKCRNCNYEWKLKE 84 (139)
T ss_dssp HHHHHHHHHHHHHHHTTCSEEEEEEEEEETTCCCCHHHHHHHHHHH-HTTSTTTTCEEEEEEECCEEEETTTCCEEEGGG
T ss_pred HHHHHHHHHHHHHHHcCCCeehhHHhhHHHHhhhhHHHHHHHHHHH-HcCCcccCCEEEEEecCCcEECCCCCCEEeccc
Confidence 5566677777776666653 22 122233445667777778766 56666554 356899999998766544
Q ss_pred -----------hh--------cCCcCCCCCCC
Q 046127 225 -----------LL--------ENQCCPIHLKP 237 (345)
Q Consensus 225 -----------l~--------~~~~c~~~~~p 237 (345)
.. ....||.||.+
T Consensus 85 ~~~~~~~~~~~~~h~~p~~~~~~~~CP~Cgs~ 116 (139)
T 3a43_A 85 VKDKFDERIKEDIHFIPEVVHAFLACPKCGSH 116 (139)
T ss_dssp CTTCCSCCCGGGCCCCGGGCGGGCSCSSSSCC
T ss_pred ccccccccccccccccccccccCCcCccccCC
Confidence 21 03569999987
No 80
>2yxb_A Coenzyme B12-dependent mutase; alpha/beta, structural genomics, NPPSFA, national project on structural and functional analyses; 1.80A {Aeropyrum pernix}
Probab=59.49 E-value=54 Score=27.01 Aligned_cols=82 Identities=16% Similarity=0.140 Sum_probs=51.3
Q ss_pred CCCCCEEEEccCCCCCCcCchhHHHHHHHHHHHHHHHHHcCCeEEEEcCCCCcChHHHHHHHhCCCCHHHHHHHHHHHHH
Q 046127 86 EPADPFVLTTPLYYVNAPPHMGSAYTTIAADAIARFQRLLGKKVIFITGTDEHGEKIAAAAADGGSSPSEHCDVVSQAYK 165 (345)
Q Consensus 86 ~~~~~~~I~~~~PypnG~LHIGHar~~i~~DvlaR~lr~~G~~V~~v~G~D~~G~~I~~~A~~~g~~p~~~~~~~~~~~~ 165 (345)
..+.++++.+++ |..|= +-..+++.+++..|++|.+.-.. .+++++++...+
T Consensus 16 ~~~~~vlla~~~----gd~Hd------iG~~~va~~l~~~G~eVi~lG~~---------------~p~e~lv~aa~~--- 67 (161)
T 2yxb_A 16 RRRYKVLVAKMG----LDGHD------RGAKVVARALRDAGFEVVYTGLR---------------QTPEQVAMAAVQ--- 67 (161)
T ss_dssp CCSCEEEEEEES----SSSCC------HHHHHHHHHHHHTTCEEECCCSB---------------CCHHHHHHHHHH---
T ss_pred CCCCEEEEEeCC----CCccH------HHHHHHHHHHHHCCCEEEECCCC---------------CCHHHHHHHHHh---
Confidence 456778877664 67773 34677888899999999954321 355555443332
Q ss_pred HHHhhcCcccCcc-ccCCChhhHHHHHHHHHHHHhCCC
Q 046127 166 TLWKDLDIAYDKF-IRTTEPKHEAIVKEFYSSVLANGD 202 (345)
Q Consensus 166 ~~l~~lgI~~D~f-~~T~~~~~~~~v~~~~~~L~~kG~ 202 (345)
. ..|.. ...+...|...+.++++.|.+.|.
T Consensus 68 -----~--~~diV~lS~~~~~~~~~~~~~i~~L~~~g~ 98 (161)
T 2yxb_A 68 -----E--DVDVIGVSILNGAHLHLMKRLMAKLRELGA 98 (161)
T ss_dssp -----T--TCSEEEEEESSSCHHHHHHHHHHHHHHTTC
T ss_pred -----c--CCCEEEEEeechhhHHHHHHHHHHHHhcCC
Confidence 2 23311 112233578889999999998775
No 81
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=51.52 E-value=5.5 Score=30.75 Aligned_cols=44 Identities=20% Similarity=0.345 Sum_probs=23.2
Q ss_pred hCCCeeecccCcccccCCCCccchh-----------hhhcCCcCCCCCCCceEee
Q 046127 199 ANGDIYKADYEGLYCVNCEEYKDEK-----------ELLENQCCPIHLKPCVARK 242 (345)
Q Consensus 199 ~kG~iy~~~~~~~yc~~c~~~l~d~-----------el~~~~~c~~~~~pve~r~ 242 (345)
..|++-+.......||.|++.|... +..-.+.||.|++|+|..+
T Consensus 21 ~~~~~~~~~~M~~~CP~Cq~eL~~~g~~~hC~~C~~~f~~~a~CPdC~q~LevLk 75 (101)
T 2jne_A 21 SSGLVPRGSHMELHCPQCQHVLDQDNGHARCRSCGEFIEMKALCPDCHQPLQVLK 75 (101)
T ss_dssp ----------CCCBCSSSCSBEEEETTEEEETTTCCEEEEEEECTTTCSBCEEEE
T ss_pred ccccccCcccccccCccCCCcceecCCEEECccccchhhccccCcchhhHHHHHH
Confidence 4566666654557888888776432 1112367999999998765
No 82
>3ezx_A MMCP 1, monomethylamine corrinoid protein 1; N terminal all helical bundle C terminal rossmann fold, cobalt, metal-binding; HET: HCB; 2.56A {Methanosarcina barkeri}
Probab=47.91 E-value=1.2e+02 Score=26.19 Aligned_cols=85 Identities=9% Similarity=0.003 Sum_probs=47.6
Q ss_pred CCCCCEEEEccCCCCCCcCchhHHHHHHHHHHHHHHHHHcCCeEEEEcCCCCcChHHHHHHHhCCCCHHHHHHHHHHHHH
Q 046127 86 EPADPFVLTTPLYYVNAPPHMGSAYTTIAADAIARFQRLLGKKVIFITGTDEHGEKIAAAAADGGSSPSEHCDVVSQAYK 165 (345)
Q Consensus 86 ~~~~~~~I~~~~PypnG~LHIGHar~~i~~DvlaR~lr~~G~~V~~v~G~D~~G~~I~~~A~~~g~~p~~~~~~~~~~~~ 165 (345)
.++.++++.+++ |..|= +-..+++.+++..|++|.+. |.| ++++++++...+.
T Consensus 90 ~~~~~vll~~v~----gd~Hd------iG~~iv~~~l~~~G~~Vi~L-G~~--------------vp~e~iv~~~~~~-- 142 (215)
T 3ezx_A 90 EEAGLAITFVAE----GDIHD------IGHRLVTTMLGANGFQIVDL-GVD--------------VLNENVVEEAAKH-- 142 (215)
T ss_dssp --CCEEEEEECT----TCCCC------HHHHHHHHHHHHTSCEEEEC-CSS--------------CCHHHHHHHHHHT--
T ss_pred CCCCeEEEEeCC----CChhH------HHHHHHHHHHHHCCCeEEEc-CCC--------------CCHHHHHHHHHHc--
Confidence 345778877544 88883 34566788899999999853 333 3344443333220
Q ss_pred HHHhhcCcccCccccCCChhhHHHHHHHHHHHHhCCC
Q 046127 166 TLWKDLDIAYDKFIRTTEPKHEAIVKEFYSSVLANGD 202 (345)
Q Consensus 166 ~~l~~lgI~~D~f~~T~~~~~~~~v~~~~~~L~~kG~ 202 (345)
.-+-+++++ +.....+...+.+++..|.++|.
T Consensus 143 -~~d~v~l~~----S~l~~~~~~~~~~~i~~l~~~~~ 174 (215)
T 3ezx_A 143 -KGEKVLLVG----SALMTTSMLGQKDLMDRLNEEKL 174 (215)
T ss_dssp -TTSCEEEEE----ECSSHHHHTHHHHHHHHHHHTTC
T ss_pred -CCCEEEEEc----hhcccCcHHHHHHHHHHHHHcCC
Confidence 011222200 22233456667778888887764
No 83
>2lcq_A Putative toxin VAPC6; PIN domain, Zn ribbon domain, ribosome biogenesis, metal BIN protein; NMR {Pyrococcus horikoshii}
Probab=47.52 E-value=8.9 Score=31.94 Aligned_cols=32 Identities=13% Similarity=0.116 Sum_probs=21.9
Q ss_pred cCcccccCCCCccchhhhhcCCcCCCCCCCceEe
Q 046127 208 YEGLYCVNCEEYKDEKELLENQCCPIHLKPCVAR 241 (345)
Q Consensus 208 ~~~~yc~~c~~~l~d~el~~~~~c~~~~~pve~r 241 (345)
.-.+.|..|+...... .....||.||.++...
T Consensus 130 ~~~y~C~~Cg~~~~~~--~~~~~Cp~CG~~~~~~ 161 (165)
T 2lcq_A 130 KWRYVCIGCGRKFSTL--PPGGVCPDCGSKVKLI 161 (165)
T ss_dssp CCCEEESSSCCEESSC--CGGGBCTTTCCBEEEC
T ss_pred cEEEECCCCCCcccCC--CCCCcCCCCCCcceeC
Confidence 3468899999876532 1124799999985443
No 84
>3s2u_A UDP-N-acetylglucosamine--N-acetylmuramyl-(pentape pyrophosphoryl-undecaprenol N-acetylglucosamine...; N-acetylglucosaminyl transferase; HET: UD1; 2.23A {Pseudomonas aeruginosa}
Probab=44.36 E-value=24 Score=32.78 Aligned_cols=36 Identities=17% Similarity=0.219 Sum_probs=27.1
Q ss_pred CCEEEEccCCCCCCcCchhHHHHHHHHHHHHHHHHHcCCeEEEEcC
Q 046127 89 DPFVLTTPLYYVNAPPHMGSAYTTIAADAIARFQRLLGKKVIFITG 134 (345)
Q Consensus 89 ~~~~I~~~~PypnG~LHIGHar~~i~~DvlaR~lr~~G~~V~~v~G 134 (345)
++++|+.+. || ||+++.+ .+++.++.+|++|.|+..
T Consensus 3 ~~i~i~~GG---Tg----GHi~pal---ala~~L~~~g~~V~~vg~ 38 (365)
T 3s2u_A 3 GNVLIMAGG---TG----GHVFPAL---ACAREFQARGYAVHWLGT 38 (365)
T ss_dssp CEEEEECCS---SH----HHHHHHH---HHHHHHHHTTCEEEEEEC
T ss_pred CcEEEEcCC---CH----HHHHHHH---HHHHHHHhCCCEEEEEEC
Confidence 567777653 34 9998765 477888889999999863
No 85
>3j20_Y 30S ribosomal protein S27AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=38.22 E-value=7.3 Score=26.19 Aligned_cols=25 Identities=12% Similarity=0.405 Sum_probs=16.2
Q ss_pred cccccCCCC--ccchhhhhcCCcCCCCCC
Q 046127 210 GLYCVNCEE--YKDEKELLENQCCPIHLK 236 (345)
Q Consensus 210 ~~yc~~c~~--~l~d~el~~~~~c~~~~~ 236 (345)
--|||.|+. ++.++. +--.|+.||-
T Consensus 19 ~k~CP~CG~~~fm~~~~--~R~~C~kCG~ 45 (50)
T 3j20_Y 19 NKFCPRCGPGVFMADHG--DRWACGKCGY 45 (50)
T ss_dssp SEECSSSCSSCEEEECS--SEEECSSSCC
T ss_pred cccCCCCCCceEEecCC--CeEECCCCCC
Confidence 568999987 555443 1246888874
No 86
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=32.62 E-value=48 Score=25.80 Aligned_cols=49 Identities=14% Similarity=0.051 Sum_probs=32.5
Q ss_pred hHHHHHHHHHHHHhCCCeeecccCcccccCCCCccchhhhhcCCcCCCCCCC
Q 046127 186 HEAIVKEFYSSVLANGDIYKADYEGLYCVNCEEYKDEKELLENQCCPIHLKP 237 (345)
Q Consensus 186 ~~~~v~~~~~~L~~kG~iy~~~~~~~yc~~c~~~l~d~el~~~~~c~~~~~p 237 (345)
-++.+.-+-+.|..+|. +-...-+-|.+||-.. ...+..+..|+.|+..
T Consensus 45 Vy~hLeHIaksl~r~g~--~L~v~p~~C~~CG~~F-~~~~~kPsrCP~CkSe 93 (105)
T 2gmg_A 45 ILEDLKVISKIAKREGM--VLLIKPAQCRKCGFVF-KAEINIPSRCPKCKSE 93 (105)
T ss_dssp HHHHHHHHHHHHTTTTE--EEEECCCBBTTTCCBC-CCCSSCCSSCSSSCCC
T ss_pred HHHHHHHHHHHHhcCCc--EEEEECcChhhCcCee-cccCCCCCCCcCCCCC
Confidence 45556666677777773 3334456799999766 3345556889999863
No 87
>3b3d_A YTBE protein, putative morphine dehydrogenase; aldo-keto reductase, oxidoreductase; 2.30A {Bacillus subtilis}
Probab=30.93 E-value=60 Score=29.68 Aligned_cols=47 Identities=15% Similarity=0.199 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHhhcCccc-Cccc-cCCChhhHHHHHHHHHHHHhCCCee
Q 046127 158 DVVSQAYKTLWKDLDIAY-DKFI-RTTEPKHEAIVKEFYSSVLANGDIY 204 (345)
Q Consensus 158 ~~~~~~~~~~l~~lgI~~-D~f~-~T~~~~~~~~v~~~~~~L~~kG~iy 204 (345)
+...+.+.+.|++||+++ |.+. .-.++.....+.+.+.+|.+.|.|-
T Consensus 126 ~~~~~~~e~SL~rL~~dyiDL~~~H~~~~~~~~e~~~al~~l~~~Gkir 174 (314)
T 3b3d_A 126 EETLAAFETSLSKLGLDYLDLYLIHWPVEGKYKEAWRALETLYKEGRIK 174 (314)
T ss_dssp HHHHHHHHHHHHHHTCSCEEEEEESSCCTTTHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHHHHHhCCCcccccccccccccchhHHHHHHHHHHHCCCEe
Confidence 345677889999999986 7432 2123334455678899999999974
No 88
>4ayb_P DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2pmz_P 2wb1_P 2y0s_P 3hkz_P 2waq_P 4b1o_P 4b1p_X
Probab=28.03 E-value=35 Score=22.63 Aligned_cols=31 Identities=16% Similarity=0.207 Sum_probs=22.4
Q ss_pred cccccCCCCccchhhhhc--CCcCCCCCCCceE
Q 046127 210 GLYCVNCEEYKDEKELLE--NQCCPIHLKPCVA 240 (345)
Q Consensus 210 ~~yc~~c~~~l~d~el~~--~~~c~~~~~pve~ 240 (345)
.+-|-+|++..+..|+.- .-.|+-||-.+..
T Consensus 3 iY~C~rCg~~fs~~el~~lP~IrCpyCGyrii~ 35 (48)
T 4ayb_P 3 VYRCGKCWKTFTDEQLKVLPGVRCPYCGYKIIF 35 (48)
T ss_dssp --CCCCTTTTCCCCCSCCCSSSCCTTTCCSCEE
T ss_pred EEEeeccCCCccHHHHhhCCCcccCccCcEEEE
Confidence 456999999999998853 2459999976543
No 89
>1gh9_A 8.3 kDa protein (gene MTH1184); beta+alpha complex structure, structural genomics, PSI, protein structure initiative; NMR {Methanothermobacterthermautotrophicus} SCOP: g.41.6.1
Probab=27.68 E-value=23 Score=25.63 Aligned_cols=37 Identities=11% Similarity=0.110 Sum_probs=24.4
Q ss_pred CcccccCCCCccchhhhhcCCcCCCCCCCceEeeccccc
Q 046127 209 EGLYCVNCEEYKDEKELLENQCCPIHLKPCVARKEDNYF 247 (345)
Q Consensus 209 ~~~yc~~c~~~l~d~el~~~~~c~~~~~pve~r~~~~~f 247 (345)
.+.=|+ |+.+.--.+-...-.|+ ||..+...+.+.+.
T Consensus 3 ~vv~C~-C~~~~~~~~~~kT~~C~-CG~~~~~~k~rif~ 39 (71)
T 1gh9_A 3 IIFRCD-CGRALYSREGAKTRKCV-CGRTVNVKDRRIFG 39 (71)
T ss_dssp EEEEET-TSCCEEEETTCSEEEET-TTEEEECCSSSCBS
T ss_pred EEEECC-CCCEEEEcCCCcEEECC-CCCeeeeceEEEEE
Confidence 345599 99886544433334598 99887777766554
No 90
>3f7j_A YVGN protein; aldo-keto reductase, oxidoreductase; 1.70A {Bacillus subtilis} PDB: 3d3f_A*
Probab=26.84 E-value=70 Score=28.58 Aligned_cols=47 Identities=13% Similarity=0.220 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHhhcCccc-Cccc-cCCChhhHHHHHHHHHHHHhCCCee
Q 046127 158 DVVSQAYKTLWKDLDIAY-DKFI-RTTEPKHEAIVKEFYSSVLANGDIY 204 (345)
Q Consensus 158 ~~~~~~~~~~l~~lgI~~-D~f~-~T~~~~~~~~v~~~~~~L~~kG~iy 204 (345)
+.+.+.+.+.|++||+++ |.+. +--++.....+.+.+.+|.+.|.|-
T Consensus 88 ~~v~~~~~~SL~rLg~dyiDl~~lH~p~~~~~~~~~~~l~~l~~~Gkir 136 (276)
T 3f7j_A 88 ETTLAAFEKSLERLQLDYLDLYLIHWPGKDKYKDTWRALEKLYKDGKIR 136 (276)
T ss_dssp HHHHHHHHHHHHHHTCSCEEEEEESCCCSSSHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHHHHHhCCCeeEEEEEecCCCCcHHHHHHHHHHHHHcCCcc
Confidence 456778899999999975 7332 1112222556778999999999974
No 91
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=26.75 E-value=23 Score=26.30 Aligned_cols=27 Identities=19% Similarity=0.340 Sum_probs=16.5
Q ss_pred cccccCCCCccchhhhhcCCcCCCCCCCceEe
Q 046127 210 GLYCVNCEEYKDEKELLENQCCPIHLKPCVAR 241 (345)
Q Consensus 210 ~~yc~~c~~~l~d~el~~~~~c~~~~~pve~r 241 (345)
..+|..|+.- +.....|+.|+.|++.-
T Consensus 18 ~~~C~~C~~~-----~~~~afCPeCgq~Le~l 44 (81)
T 2jrp_A 18 TAHCETCAKD-----FSLQALCPDCRQPLQVL 44 (81)
T ss_dssp EEECTTTCCE-----EEEEEECSSSCSCCCEE
T ss_pred ceECcccccc-----CCCcccCcchhhHHHHH
Confidence 3446666652 22235788888887764
No 92
>6rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.50A {Desulfovibrio desulfuricans} SCOP: g.41.5.1
Probab=26.63 E-value=38 Score=22.25 Aligned_cols=29 Identities=24% Similarity=0.528 Sum_probs=19.3
Q ss_pred CcccccCCCCccchh--------hhhcCCcCCCCCCC
Q 046127 209 EGLYCVNCEEYKDEK--------ELLENQCCPIHLKP 237 (345)
Q Consensus 209 ~~~yc~~c~~~l~d~--------el~~~~~c~~~~~p 237 (345)
..|-|..|+-..++. ++-++-.|+.||.+
T Consensus 3 ~~y~C~vCGyvyd~~~Gd~t~f~~lP~dw~CP~Cg~~ 39 (46)
T 6rxn_A 3 QKYVCNVCGYEYDPAEHDNVPFDQLPDDWCCPVCGVS 39 (46)
T ss_dssp CCEEETTTCCEECGGGGTTCCGGGSCTTCBCTTTCCB
T ss_pred CEEECCCCCeEEeCCcCCCcchhhCCCCCcCcCCCCc
Confidence 356788888666542 34344479999975
No 93
>1yk4_A Rubredoxin, RD; electron transport; 0.69A {Pyrococcus abyssi} PDB: 2pya_A 1yk5_A 1bq8_A 1bq9_A* 3kyu_A 3kyv_A 3kyw_A 3kyx_A 3kyy_A 3ryg_A 3rz6_A 3rzt_A 3ss2_A 1brf_A 1caa_A 1cad_A 1vcx_A 1zrp_A 1iu5_A 1iu6_A ...
Probab=26.04 E-value=31 Score=23.25 Aligned_cols=28 Identities=32% Similarity=0.619 Sum_probs=18.9
Q ss_pred cccccCCCCccchh---------------hhhcCCcCCCCCCC
Q 046127 210 GLYCVNCEEYKDEK---------------ELLENQCCPIHLKP 237 (345)
Q Consensus 210 ~~yc~~c~~~l~d~---------------el~~~~~c~~~~~p 237 (345)
.|-|..|+-.+++. ++-++-.|+.|+.+
T Consensus 2 ~~~C~~CGyvYd~~~Gdp~~gi~pGt~f~~lP~dw~CP~Cg~~ 44 (52)
T 1yk4_A 2 KLSCKICGYIYDEDEGDPDNGISPGTKFEDLPDDWVCPLCGAP 44 (52)
T ss_dssp EEEESSSSCEEETTTCBGGGTBCTTCCGGGSCTTCBCTTTCCB
T ss_pred cEEeCCCCeEECCCcCCcccCcCCCCCHhHCCCCCcCCCCCCC
Confidence 46788888666543 44444579999875
No 94
>5rub_A Rubisco (ribulose-1,5-bisphosphate carboxylase(slash)oxygenase); lyase(carbon-carbon); 1.70A {Rhodospirillum rubrum} SCOP: c.1.14.1 d.58.9.1 PDB: 1rus_A 2rus_A 9rub_A* 1rba_A
Probab=25.66 E-value=20 Score=35.60 Aligned_cols=75 Identities=15% Similarity=0.089 Sum_probs=55.5
Q ss_pred ccCCCCCCcCchhHHHHHHHHHHHHHHHHHcCC-eEEEEcCCCCcChH-----------HHHHHHhCCCCHHHHHHHHHH
Q 046127 95 TPLYYVNAPPHMGSAYTTIAADAIARFQRLLGK-KVIFITGTDEHGEK-----------IAAAAADGGSSPSEHCDVVSQ 162 (345)
Q Consensus 95 ~~~PypnG~LHIGHar~~i~~DvlaR~lr~~G~-~V~~v~G~D~~G~~-----------I~~~A~~~g~~p~~~~~~~~~ 162 (345)
...|-|+|-+|.||+-. ..+..|. +|.+..|--.+|-| ....|..+|++..+.+. -+.
T Consensus 386 ~v~PV~SGGih~g~~p~---------l~~~~G~~Dvi~~~GGGi~GHP~G~aAGa~A~RqA~eA~~~G~~l~e~Ak-~~~ 455 (490)
T 5rub_A 386 ACTPIISGGMNALRMPG---------FFENLGNANVILTAGGGAFGHIDGPVAGARSLRQAWQAWRDGVPVLDYAR-EHK 455 (490)
T ss_dssp CCEEEEEECCCTTTHHH---------HHHHHSCCCCEEEECTTTTCCTTCHHHHHHHHHHHHHHHHHTCCHHHHHH-TCH
T ss_pred CcccccCCCcchhhHHH---------HHHHhCCCcEEEecCCcccCCCCCcHHHHHHHHHHHHHHHcCCCHHHHhh-cCH
Confidence 45778899999999853 2366787 69888887777743 33445567999988664 457
Q ss_pred HHHHHHhhcCcccCccc
Q 046127 163 AYKTLWKDLDIAYDKFI 179 (345)
Q Consensus 163 ~~~~~l~~lgI~~D~f~ 179 (345)
+.+..|+.++-+-|.+|
T Consensus 456 eL~~Ale~w~~~~~~~~ 472 (490)
T 5rub_A 456 ELARAFESFPGDADQIY 472 (490)
T ss_dssp HHHHHHHHSHHHHHHHS
T ss_pred HHHHHHHHcCcchhhcC
Confidence 88889999998888654
No 95
>2kn9_A Rubredoxin; metalloprotein, ssgcid, structural genomics, seattle structural genomics center for infectious electron transport, iron; NMR {Mycobacterium tuberculosis}
Probab=25.61 E-value=35 Score=25.30 Aligned_cols=30 Identities=23% Similarity=0.501 Sum_probs=21.6
Q ss_pred cCcccccCCCCccchh---------------hhhcCCcCCCCCCC
Q 046127 208 YEGLYCVNCEEYKDEK---------------ELLENQCCPIHLKP 237 (345)
Q Consensus 208 ~~~~yc~~c~~~l~d~---------------el~~~~~c~~~~~p 237 (345)
...|-|..|+-.+++. ++-++-.|+.|+.+
T Consensus 25 m~~y~C~vCGyvYD~~~Gdp~~gI~pGT~fedlPddW~CPvCga~ 69 (81)
T 2kn9_A 25 YKLFRCIQCGFEYDEALGWPEDGIAAGTRWDDIPDDWSCPDCGAA 69 (81)
T ss_dssp CCEEEETTTCCEEETTTCBTTTTBCTTCCTTTSCTTCCCTTTCCC
T ss_pred cceEEeCCCCEEEcCCcCCcccCcCCCCChhHCCCCCcCCCCCCC
Confidence 4579999999776653 24444579999976
No 96
>3b3e_A YVGN protein; aldo-keto reductase, oxidoreductase; 1.80A {Bacillus subtilis} PDB: 3b3d_A
Probab=25.56 E-value=74 Score=29.12 Aligned_cols=47 Identities=13% Similarity=0.220 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHhhcCccc-Cccc-cCCChhhHHHHHHHHHHHHhCCCee
Q 046127 158 DVVSQAYKTLWKDLDIAY-DKFI-RTTEPKHEAIVKEFYSSVLANGDIY 204 (345)
Q Consensus 158 ~~~~~~~~~~l~~lgI~~-D~f~-~T~~~~~~~~v~~~~~~L~~kG~iy 204 (345)
+.+.+.+.+.|++||+++ |.+. .--++.....+.+.+.+|.+.|.|-
T Consensus 122 ~~i~~~~e~SL~rLg~dyiDl~~lH~p~~~~~~e~~~al~~l~~~Gkir 170 (310)
T 3b3e_A 122 ETTLAAFEKSLERLQLDYLDLYLIHWPGKDKYKDTWRALEKLYKDGKIR 170 (310)
T ss_dssp HHHHHHHHHHHHHHTCSCEEEEEESCCCSSCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHHHHHhCCCeeEEEEeeCCCcccHHHHHHHHHHHHHcCCcc
Confidence 456788999999999985 7432 1112222566778999999999974
No 97
>1s24_A Rubredoxin 2; electron transport; NMR {Pseudomonas oleovorans} SCOP: g.41.5.1
Probab=25.48 E-value=28 Score=26.23 Aligned_cols=30 Identities=27% Similarity=0.667 Sum_probs=21.6
Q ss_pred cCcccccCCCCccchh---------------hhhcCCcCCCCCCC
Q 046127 208 YEGLYCVNCEEYKDEK---------------ELLENQCCPIHLKP 237 (345)
Q Consensus 208 ~~~~yc~~c~~~l~d~---------------el~~~~~c~~~~~p 237 (345)
...|-|..|+-.+++. ++-++-.|+.|+.+
T Consensus 33 m~~y~C~vCGyvYD~~~Gdp~~gI~pGT~fedlPddW~CPvCga~ 77 (87)
T 1s24_A 33 YLKWICITCGHIYDEALGDEAEGFTPGTRFEDIPDDWCCPDCGAT 77 (87)
T ss_dssp CCEEEETTTTEEEETTSCCTTTTCCSCCCGGGCCTTCCCSSSCCC
T ss_pred CceEECCCCCeEecCCcCCcccCcCCCCChhHCCCCCCCCCCCCC
Confidence 4578999999666542 44444579999976
No 98
>4amg_A Snogd; transferase, polyketide biosynthesis, GT1 family, nogalamyci; HET: MLY; 2.59A {Streptomyces nogalater} PDB: 4an4_A* 4amb_A*
Probab=24.84 E-value=59 Score=29.71 Aligned_cols=38 Identities=24% Similarity=0.323 Sum_probs=27.7
Q ss_pred CCCEEEEccCCCCCCcCchhHHHHHHHHHHHHHHHHHcCCeEEEEcCC
Q 046127 88 ADPFVLTTPLYYVNAPPHMGSAYTTIAADAIARFQRLLGKKVIFITGT 135 (345)
Q Consensus 88 ~~~~~I~~~~PypnG~LHIGHar~~i~~DvlaR~lr~~G~~V~~v~G~ 135 (345)
..++++.+. | =.||+.+.+ .++|-|+.+||+|.++++-
T Consensus 22 ~MRIL~~~~-p------~~GHv~P~l---~LA~~L~~rGh~Vt~~t~~ 59 (400)
T 4amg_A 22 SMRALFITS-P------GLSHILPTV---PLAQALRALGHEVRYATGG 59 (400)
T ss_dssp CCEEEEECC-S------SHHHHGGGH---HHHHHHHHTTCEEEEEECS
T ss_pred CCeEEEECC-C------chhHHHHHH---HHHHHHHHCCCEEEEEeCc
Confidence 356666532 2 249998876 4788999999999998753
No 99
>4gie_A Prostaglandin F synthase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: NAP; 1.25A {Trypanosoma cruzi} PDB: 4fzi_A*
Probab=23.43 E-value=88 Score=28.14 Aligned_cols=45 Identities=11% Similarity=0.121 Sum_probs=30.0
Q ss_pred HHHHHHHHHhhcCccc-Cccc-cCCChhhHHHHHHHHHHHHhCCCee
Q 046127 160 VSQAYKTLWKDLDIAY-DKFI-RTTEPKHEAIVKEFYSSVLANGDIY 204 (345)
Q Consensus 160 ~~~~~~~~l~~lgI~~-D~f~-~T~~~~~~~~v~~~~~~L~~kG~iy 204 (345)
....+.+.|++||+++ |.+. .--+..-...+.+.+.+|.+.|.|-
T Consensus 97 ~~~~~e~SL~rL~~dyiDly~lH~p~~~~~~e~~~al~~l~~~Gkir 143 (290)
T 4gie_A 97 TLAAFERSRELLGLEYIDLYLIHWPGKKKFVDTWKALEKLYEEKKVR 143 (290)
T ss_dssp HHHHHHHHHHHHTCSCEEEEEECCCCSSSHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHHHhCCCceeeEEecCCCCCcchHHHHHHHHHHHCCCcc
Confidence 4556788999999986 7332 1112222335667899999999874
No 100
>1dx8_A Rubredoxin; electron transport, zinc-substitution; NMR {Guillardia theta} SCOP: g.41.5.1 PDB: 1h7v_A
Probab=23.27 E-value=45 Score=23.93 Aligned_cols=30 Identities=20% Similarity=0.421 Sum_probs=21.0
Q ss_pred cCcccccCCCCccchh---------------hhhcCCcCCCCCCC
Q 046127 208 YEGLYCVNCEEYKDEK---------------ELLENQCCPIHLKP 237 (345)
Q Consensus 208 ~~~~yc~~c~~~l~d~---------------el~~~~~c~~~~~p 237 (345)
...|-|..|+-.+++. ++-++-.|+.|+.+
T Consensus 5 m~~y~C~vCGyiYd~~~Gdp~~gi~pGT~f~~lPddw~CP~Cga~ 49 (70)
T 1dx8_A 5 EGKYECEACGYIYEPEKGDKFAGIPPGTPFVDLSDSFMCPACRSP 49 (70)
T ss_dssp SSCEEETTTCCEECTTTCCTTTTCCSSCCGGGSCTTCBCTTTCCB
T ss_pred CceEEeCCCCEEEcCCCCCcccCcCCCCchhhCCCCCcCCCCCCC
Confidence 4568899999776643 34444579999976
No 101
>1gve_A Aflatoxin B1 aldehyde reductase member 3; oxidoreductase, aldo-keto reductase, succinic semialdehyde oxidoreductase, AKR7 family; HET: NAP CIT; 1.38A {Rattus norvegicus} SCOP: c.1.7.1 PDB: 2clp_A* 2c91_A*
Probab=23.08 E-value=1e+02 Score=28.07 Aligned_cols=47 Identities=15% Similarity=0.072 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHhhcCccc-Cccc-cCCC-hhhHHHHHHHHHHHHhCCCee
Q 046127 158 DVVSQAYKTLWKDLDIAY-DKFI-RTTE-PKHEAIVKEFYSSVLANGDIY 204 (345)
Q Consensus 158 ~~~~~~~~~~l~~lgI~~-D~f~-~T~~-~~~~~~v~~~~~~L~~kG~iy 204 (345)
+.+.+.+.+.|++||+++ |.+. +--+ ..-...+.+.+.+|.+.|.|-
T Consensus 85 ~~i~~~~~~SL~rL~~dyiDl~~lH~p~~~~~~~e~~~al~~l~~~Gkir 134 (327)
T 1gve_A 85 ADVRFQLETSLKRLQCPRVDLFYLHFPDHGTPIEETLQACHQLHQEGKFV 134 (327)
T ss_dssp HHHHHHHHHHHHHTTCSCEEEEEECSCCTTSCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHHHHHHCCCeEeEEEecCCCCCCCHHHHHHHHHHHHhCCcee
Confidence 346778899999999985 7432 1111 112356677899999999974
No 102
>3oti_A CALG3; calicheamicin, TDP, structural genomics, PSI-2, protein STRU initiative, center for eukaryotic structural genomics, CESG fold; HET: TYD C0T; 1.60A {Micromonospora echinospora} PDB: 3d0q_A* 3d0r_A*
Probab=22.79 E-value=89 Score=28.71 Aligned_cols=38 Identities=16% Similarity=0.217 Sum_probs=28.4
Q ss_pred CCCCEEEEccCCCCCCcCchhHHHHHHHHHHHHHHHHHcCCeEEEEcC
Q 046127 87 PADPFVLTTPLYYVNAPPHMGSAYTTIAADAIARFQRLLGKKVIFITG 134 (345)
Q Consensus 87 ~~~~~~I~~~~PypnG~LHIGHar~~i~~DvlaR~lr~~G~~V~~v~G 134 (345)
...++++.+.+ .-||..+.+ .+++.++.+|++|.++++
T Consensus 19 ~~MrIl~~~~~-------~~Ghv~~~~---~La~~L~~~GheV~v~~~ 56 (398)
T 3oti_A 19 RHMRVLFVSSP-------GIGHLFPLI---QLAWGFRTAGHDVLIAVA 56 (398)
T ss_dssp CCCEEEEECCS-------SHHHHGGGH---HHHHHHHHTTCEEEEEES
T ss_pred hcCEEEEEcCC-------CcchHhHHH---HHHHHHHHCCCEEEEecc
Confidence 34577777542 468887654 478889999999999988
No 103
>3rsc_A CALG2; TDP, enediyne, structural genomics, PSI-2, protein structure initiative, center for eukaryotic structural genomics; HET: TYD C0T; 2.19A {Micromonospora echinospora} PDB: 3iaa_A*
Probab=22.68 E-value=70 Score=29.50 Aligned_cols=41 Identities=12% Similarity=0.173 Sum_probs=28.2
Q ss_pred CCCCCCEEEEccCCCCCCcCchhHHHHHHHHHHHHHHHHHcCCeEEEEcCC
Q 046127 85 TEPADPFVLTTPLYYVNAPPHMGSAYTTIAADAIARFQRLLGKKVIFITGT 135 (345)
Q Consensus 85 ~~~~~~~~I~~~~PypnG~LHIGHar~~i~~DvlaR~lr~~G~~V~~v~G~ 135 (345)
.....++++.+.+ -.||+.+.+ .+++.++.+||+|.++++-
T Consensus 17 ~~~m~rIl~~~~~-------~~GHv~p~l---~La~~L~~~Gh~V~v~~~~ 57 (415)
T 3rsc_A 17 GRHMAHLLIVNVA-------SHGLILPTL---TVVTELVRRGHRVSYVTAG 57 (415)
T ss_dssp --CCCEEEEECCS-------CHHHHGGGH---HHHHHHHHTTCEEEEEECG
T ss_pred cccCCEEEEEeCC-------CccccccHH---HHHHHHHHCCCEEEEEeCH
Confidence 3445567776542 369987665 5777788899999998853
No 104
>3f2b_A DNA-directed DNA polymerase III alpha chain; DNA polymerase C, DNA polymerase III; HET: DGT; 2.39A {Geobacillus kaustophilus} PDB: 3f2c_A* 3f2d_A*
Probab=22.67 E-value=1e+02 Score=33.46 Aligned_cols=54 Identities=17% Similarity=0.265 Sum_probs=37.0
Q ss_pred hhhHHHHHHHHHHHHhCCCeeeccc--------------------CcccccCCCC--cc------chhhhhcCCcCCCCC
Q 046127 184 PKHEAIVKEFYSSVLANGDIYKADY--------------------EGLYCVNCEE--YK------DEKELLENQCCPIHL 235 (345)
Q Consensus 184 ~~~~~~v~~~~~~L~~kG~iy~~~~--------------------~~~yc~~c~~--~l------~d~el~~~~~c~~~~ 235 (345)
+.|.-.|+++++.-.++|+..-..+ +-|.||+|.- |. +.-++- +..||.||
T Consensus 456 ~~YFLIV~D~V~~A~~~gilvG~RGSaAgSlVAy~LgITeVDPl~phy~c~~c~~~ef~~~~~~~~g~dlp-~k~cp~cg 534 (1041)
T 3f2b_A 456 AVIYLISHKLVKKSLDDGYLVGSRGSVGSSFVATMTEITEVNPLPPHYVCPNCKHSEFFNDGSVGSGFDLP-DKNCPRCG 534 (1041)
T ss_dssp HHHHHHHHHHHHHHHHTTCCCEECGGGGGCHHHHHTTSCSCCCSCSEEECTTTCCEEECCSSCCSCGGGSC-CCBCTTTC
T ss_pred cHhHHHHHHHHHHHHHCCCcccCcccHHHHHHHHHhcCCCcCCCcccccCccccccccccccccccccCCc-cccCcccc
Confidence 4667788888888888888764322 2467999983 33 333444 36799999
Q ss_pred CCc
Q 046127 236 KPC 238 (345)
Q Consensus 236 ~pv 238 (345)
+++
T Consensus 535 ~~~ 537 (1041)
T 3f2b_A 535 TKY 537 (1041)
T ss_dssp CBC
T ss_pred ccc
Confidence 763
No 105
>2v3b_B Rubredoxin 2, rubredoxin; alkane degradation, iron-sulfur protein, oxidoreductase, ELE transfer, electron transport, FAD, NAD, iron; HET: FAD; 2.45A {Pseudomonas aeruginosa}
Probab=22.66 E-value=38 Score=23.07 Aligned_cols=28 Identities=25% Similarity=0.360 Sum_probs=19.1
Q ss_pred cccccCCCCccchh---------------hhhcCCcCCCCCCC
Q 046127 210 GLYCVNCEEYKDEK---------------ELLENQCCPIHLKP 237 (345)
Q Consensus 210 ~~yc~~c~~~l~d~---------------el~~~~~c~~~~~p 237 (345)
.|-|..|+-.+++. ++-++-.|+.|+.+
T Consensus 3 ~y~C~~CGyvYd~~~Gdp~~gi~pGt~f~~lP~dw~CP~Cga~ 45 (55)
T 2v3b_B 3 KWQCVVCGFIYDEALGLPEEGIPAGTRWEDIPADWVCPDCGVG 45 (55)
T ss_dssp EEEETTTCCEEETTTCBTTTTBCTTCCGGGSCTTCCCTTTCCC
T ss_pred cEEeCCCCeEECCCcCCcccCcCCCCChhHCCCCCcCCCCCCC
Confidence 47788888666543 24444579999976
No 106
>1pz1_A GSP69, general stress protein 69; beta-alpha barrel, aldo-keto reductase, TIM barrel, oxidoreductase; HET: NAP; 2.20A {Bacillus subtilis} SCOP: c.1.7.1
Probab=22.61 E-value=1.1e+02 Score=27.96 Aligned_cols=47 Identities=17% Similarity=0.236 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHhhcCccc-Cccc-cCCCh-hhHHHHHHHHHHHHhCCCee
Q 046127 158 DVVSQAYKTLWKDLDIAY-DKFI-RTTEP-KHEAIVKEFYSSVLANGDIY 204 (345)
Q Consensus 158 ~~~~~~~~~~l~~lgI~~-D~f~-~T~~~-~~~~~v~~~~~~L~~kG~iy 204 (345)
+.+.+.+.+.|++||+++ |.+. +--++ .-.+.+.+.+.+|.++|.|-
T Consensus 101 ~~i~~~~~~SL~rLg~dyiDl~~lH~p~~~~~~~e~~~al~~l~~~Gkir 150 (333)
T 1pz1_A 101 ARIVEEVENSLKRLQTDYIDLYQVHWPDPLVPIEETAEVMKELYDAGKIR 150 (333)
T ss_dssp HHHHHHHHHHHHHTTSSCBSEEEECSCCTTSCHHHHHHHHHHHHHTTSBS
T ss_pred HHHHHHHHHHHHHhCCCceeEEEecCCCCCCCHHHHHHHHHHHHHCCcCC
Confidence 446778899999999975 7432 11111 12356778999999999864
No 107
>3eau_A Voltage-gated potassium channel subunit beta-2; kvbeta, cortisone, NADPH, cytoplasm, ION transport, ionic channel, NADP, phosphoprotein; HET: NDP PDN; 1.82A {Rattus norvegicus} SCOP: c.1.7.1 PDB: 2r9r_A* 2a79_A* 3lnm_A* 1exb_A* 3eb4_A* 3eb3_A* 1qrq_A* 1zsx_A*
Probab=22.53 E-value=95 Score=28.23 Aligned_cols=47 Identities=13% Similarity=0.169 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHhhcCccc-Cccc-c-CCChhhHHHHHHHHHHHHhCCCee
Q 046127 158 DVVSQAYKTLWKDLDIAY-DKFI-R-TTEPKHEAIVKEFYSSVLANGDIY 204 (345)
Q Consensus 158 ~~~~~~~~~~l~~lgI~~-D~f~-~-T~~~~~~~~v~~~~~~L~~kG~iy 204 (345)
+.+.+.+.+.|++||+++ |.+. + .......+.+.+.+.+|.+.|.|-
T Consensus 100 ~~i~~~~e~SL~rLg~dyiDl~~lH~p~~~~~~~e~~~al~~l~~~Gkir 149 (327)
T 3eau_A 100 KHIIEGLKASLERLQLEYVDVVFANRPDPNTPMEETVRAMTHVINQGMAM 149 (327)
T ss_dssp HHHHHHHHHHHHHHTCSCEEEEEESSCCTTSCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHHHHHhCCCccceEEEeCCCCCCCHHHHHHHHHHHHHcCCee
Confidence 346778889999999975 7432 1 111122345678999999999874
No 108
>3dvk_B Voltage-dependent R-type calcium channel subunit; calmodulin, IQ domain, inactivation, facili calcium-dependent, voltage-gated; 2.30A {Rattus norvegicus} PDB: 3dvm_B
Probab=22.07 E-value=93 Score=17.41 Aligned_cols=19 Identities=26% Similarity=0.433 Sum_probs=15.6
Q ss_pred chhHHH-HHHHHHHHHHHHH
Q 046127 105 HMGSAY-TTIAADAIARFQR 123 (345)
Q Consensus 105 HIGHar-~~i~~DvlaR~lr 123 (345)
|+|-++ .+++.|-+.++..
T Consensus 2 ~VGKiYA~llI~d~~r~~k~ 21 (23)
T 3dvk_B 2 HMGKIYAAMMIMDYYKQSKV 21 (26)
T ss_dssp CCHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHhc
Confidence 899987 6788999888754
No 109
>3up8_A Putative 2,5-diketo-D-gluconic acid reductase B; nysgrc, PSI-biology, structural genomics; 1.96A {Sinorhizobium meliloti}
Probab=21.51 E-value=1e+02 Score=27.96 Aligned_cols=47 Identities=13% Similarity=0.063 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHhhcCccc-Cccc-c-CCChhhHHHHHHHHHHHHhCCCee
Q 046127 158 DVVSQAYKTLWKDLDIAY-DKFI-R-TTEPKHEAIVKEFYSSVLANGDIY 204 (345)
Q Consensus 158 ~~~~~~~~~~l~~lgI~~-D~f~-~-T~~~~~~~~v~~~~~~L~~kG~iy 204 (345)
+.+.+.+.+.|++||+++ |.+. . .........+.+.+.+|.+.|.|-
T Consensus 104 ~~i~~~~e~SL~rLg~dyiDl~llH~p~~~~~~~e~~~al~~l~~~Gkir 153 (298)
T 3up8_A 104 DAFIASVDESLRKLRTDHVDLLLLHWPGSDVPMAERIGALNEVRNAGKVR 153 (298)
T ss_dssp HHHHHHHHHHHHHHTSSCEEEEEESCSCCSSCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHHHHHhCCCcEEEEEEccCCCCCCHHHHHHHHHHHHHcCCcc
Confidence 456788999999999985 7332 1 111113456778899999999974
No 110
>1zvf_A 3-hydroxyanthranilate 3,4-dioxygenase; jellyroll beta-barrel, oxidoreductase; 2.41A {Saccharomyces cerevisiae} SCOP: b.82.1.20
Probab=21.38 E-value=16 Score=31.12 Aligned_cols=17 Identities=29% Similarity=0.640 Sum_probs=12.8
Q ss_pred ccCcccccCCCCccchh
Q 046127 207 DYEGLYCVNCEEYKDEK 223 (345)
Q Consensus 207 ~~~~~yc~~c~~~l~d~ 223 (345)
++-.|||.+|+..+-+.
T Consensus 121 D~~~wyc~~c~~~~~e~ 137 (176)
T 1zvf_A 121 DKIRWYCSHCRQVVHES 137 (176)
T ss_dssp CEEEEECTTTCCEEEEE
T ss_pred cceEEEcCCCCCEEEEE
Confidence 34589999999877553
No 111
>1pyf_A IOLS protein; beta-alpha barrel, aldo-keto reductase, TIM barrel, oxidoreductase; 1.80A {Bacillus subtilis} SCOP: c.1.7.1 PDB: 1pz0_A*
Probab=21.31 E-value=1.1e+02 Score=27.68 Aligned_cols=47 Identities=17% Similarity=0.244 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHhhcCccc-Cccc-cCCC-hhhHHHHHHHHHHHHhCCCee
Q 046127 158 DVVSQAYKTLWKDLDIAY-DKFI-RTTE-PKHEAIVKEFYSSVLANGDIY 204 (345)
Q Consensus 158 ~~~~~~~~~~l~~lgI~~-D~f~-~T~~-~~~~~~v~~~~~~L~~kG~iy 204 (345)
+.+.+.+.+.|++||+++ |.+. +--+ ..-...+.+.+.+|.++|.|-
T Consensus 101 ~~i~~~~~~SL~rL~~dyiDl~~lH~p~~~~~~~e~~~al~~l~~~Gkir 150 (312)
T 1pyf_A 101 DFLKKSVDESLKRLNTDYIDLFYIHFPDEHTPKDEAVNALNEMKKAGKIR 150 (312)
T ss_dssp HHHHHHHHHHHHHHTSSCBSEEEECSCCSSSCHHHHHHHHHHHHHTTSBS
T ss_pred HHHHHHHHHHHHHhCCCcEEEEEeCCCCCCCCHHHHHHHHHHHHHCCCcC
Confidence 446778889999999985 7432 1111 112456777899999999864
No 112
>1twf_L ABC10-alpha, DNA-directed RNA polymerases I, II, and III 7.7 K polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.9.2 PDB: 1i3q_L 1i6h_L 1k83_L* 1nik_L 1nt9_L 1pqv_L 1r5u_L 1r9s_L* 1r9t_L* 1sfo_L* 1twa_L* 1twc_L* 1i50_L* 1twg_L* 1twh_L* 1wcm_L 1y1v_L 1y1w_L 1y1y_L 1y77_L* ...
Probab=21.28 E-value=49 Score=23.72 Aligned_cols=35 Identities=9% Similarity=0.116 Sum_probs=22.2
Q ss_pred ccCcccccCCCCccchhhhhcCCcCCCCCCCceEee
Q 046127 207 DYEGLYCVNCEEYKDEKELLENQCCPIHLKPCVARK 242 (345)
Q Consensus 207 ~~~~~yc~~c~~~l~d~el~~~~~c~~~~~pve~r~ 242 (345)
....+-|..|+.-..-++ .+..+|+.||..+.+.+
T Consensus 25 ~~v~Y~C~~CG~~~e~~~-~d~irCp~CG~RILyK~ 59 (70)
T 1twf_L 25 ATLKYICAECSSKLSLSR-TDAVRCKDCGHRILLKA 59 (70)
T ss_dssp CCCCEECSSSCCEECCCT-TSTTCCSSSCCCCCBCC
T ss_pred ceEEEECCCCCCcceeCC-CCCccCCCCCceEeEec
Confidence 445667999998743331 12357999998554443
No 113
>1yfu_A 3-hydroxyanthranilate-3,4-dioxygenase; cupin, oxidoreductase; 1.90A {Cupriavidus metallidurans} SCOP: b.82.1.20 PDB: 1yfw_A* 1yfx_A* 1yfy_A*
Probab=21.24 E-value=15 Score=31.25 Aligned_cols=17 Identities=24% Similarity=0.391 Sum_probs=12.9
Q ss_pred ccCcccccCCCCccchh
Q 046127 207 DYEGLYCVNCEEYKDEK 223 (345)
Q Consensus 207 ~~~~~yc~~c~~~l~d~ 223 (345)
++-.|||.+|+..+-+.
T Consensus 119 d~~~wyc~~c~~~~~e~ 135 (174)
T 1yfu_A 119 DGFEWYCDACGHLVHRV 135 (174)
T ss_dssp EEEEEECTTTCCEEEEE
T ss_pred cceEEEcCCCCCEEEEE
Confidence 34589999999877653
No 114
>3v0s_A Perakine reductase; AKR superfamily, oxidoreductase; HET: MLZ M3L MLY ATR; 1.77A {Rauvolfia serpentina} PDB: 3v0u_A 3v0t_A* 3uyi_A*
Probab=21.23 E-value=1e+02 Score=28.24 Aligned_cols=47 Identities=23% Similarity=0.330 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHhhcCccc-Cccc-c-CCChhhHHHHHHHHHHHHhCCCee
Q 046127 158 DVVSQAYKTLWKDLDIAY-DKFI-R-TTEPKHEAIVKEFYSSVLANGDIY 204 (345)
Q Consensus 158 ~~~~~~~~~~l~~lgI~~-D~f~-~-T~~~~~~~~v~~~~~~L~~kG~iy 204 (345)
+.+.+.+.+.|++||+++ |.+. + .......+.+.+.+.+|.++|.|-
T Consensus 102 ~~i~~~~~~SL~rLg~dyiDl~~lH~p~~~~~~~e~~~al~~l~~~Gkir 151 (337)
T 3v0s_A 102 DYVRSCCEASLKRLDVDYIDLFYIHRIDTTVPIEITMGELXXLVEEGKIX 151 (337)
T ss_dssp HHHHHHHHHHHHHHTCSCEEEEEESSCCTTSCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHHHHHhCCCCeeEEEecCCCCCCCHHHHHHHHHHHHHCCCee
Confidence 456778888999999975 7432 1 111122456778899999999974
No 115
>1qjc_A Phosphopantetheine adenylyltransferase; coenzyme A biosynthesis, nucleotidyltransferase; HET: PNS; 1.64A {Escherichia coli} SCOP: c.26.1.3 PDB: 1h1t_A* 1gn8_A* 1b6t_A* 3l92_A* 3l93_A
Probab=21.17 E-value=1.1e+02 Score=24.38 Aligned_cols=39 Identities=15% Similarity=0.169 Sum_probs=22.2
Q ss_pred CEEEEccCCCCCCcCchhHHHHHHHHHHHHHHHHHcCCeEEEEcCCCCc
Q 046127 90 PFVLTTPLYYVNAPPHMGSAYTTIAADAIARFQRLLGKKVIFITGTDEH 138 (345)
Q Consensus 90 ~~~I~~~~PypnG~LHIGHar~~i~~DvlaR~lr~~G~~V~~v~G~D~~ 138 (345)
++.|+.+.- .|+|+||.. ++ .+ .+....+|.++...+.+
T Consensus 2 ~i~i~~GsF---DpvH~GH~~--l~----~~-a~~~~d~v~v~~~~~p~ 40 (158)
T 1qjc_A 2 KRAIYPGTF---DPITNGHID--IV----TR-ATQMFDHVILAIAASPS 40 (158)
T ss_dssp CEEEEEECC---TTCCHHHHH--HH----HH-HHTTSSEEEEEEESCCS
T ss_pred CEEEEEecC---CCCCHHHHH--HH----HH-HHHhCCEEEEEECCCCC
Confidence 345555554 579999986 22 22 22233567777766644
No 116
>3o0k_A Aldo/keto reductase; ssgcid, ALS collaborative crystallography; 1.80A {Brucella melitensis biovar}
Probab=20.86 E-value=1.2e+02 Score=27.32 Aligned_cols=47 Identities=17% Similarity=0.243 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHhhcCccc-Cccc-cCCCh--hhHHHHHHHHHHHHhCCCee
Q 046127 158 DVVSQAYKTLWKDLDIAY-DKFI-RTTEP--KHEAIVKEFYSSVLANGDIY 204 (345)
Q Consensus 158 ~~~~~~~~~~l~~lgI~~-D~f~-~T~~~--~~~~~v~~~~~~L~~kG~iy 204 (345)
+.+.+.+.+.|++||+++ |.+. .--++ .-...+.+.+.+|.++|.|-
T Consensus 107 ~~i~~~~e~SL~rLg~dyiDl~~lH~p~~~~~~~~e~~~al~~l~~~Gkir 157 (283)
T 3o0k_A 107 ESTLKAFDTSLKKLGTDYVDLYLIHWPMPSKDLFMETWRAFIKLKEEGRVK 157 (283)
T ss_dssp HHHHHHHHHHHHHHTSSCEEEEEECCSCSCHHHHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHHHHHhCCCceeEEEECCCCCCcccHHHHHHHHHHHHHCCCcc
Confidence 457788999999999985 7432 11122 23456778899999999974
No 117
>3n6q_A YGHZ aldo-keto reductase; TIM barrel, oxidoreductase; 1.80A {Escherichia coli} SCOP: c.1.7.0 PDB: 4ast_A 4aub_A*
Probab=20.75 E-value=1.1e+02 Score=28.18 Aligned_cols=47 Identities=11% Similarity=0.192 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHhhcCccc-Cccc-cCCC-hhhHHHHHHHHHHHHhCCCee
Q 046127 158 DVVSQAYKTLWKDLDIAY-DKFI-RTTE-PKHEAIVKEFYSSVLANGDIY 204 (345)
Q Consensus 158 ~~~~~~~~~~l~~lgI~~-D~f~-~T~~-~~~~~~v~~~~~~L~~kG~iy 204 (345)
+.+.+.+.+.|++||+++ |.+. +--+ ..-...+.+.+.+|.+.|.|-
T Consensus 114 ~~i~~~~e~SL~rL~~dyiDl~~lH~p~~~~~~~e~~~al~~l~~~Gkir 163 (346)
T 3n6q_A 114 KYLLASLDQSLKRMGLEYVDIFYSHRVDENTPMEETASALAHAVQSGKAL 163 (346)
T ss_dssp HHHHHHHHHHHHHHTCSCEEEEEECSCCTTSCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHHHHHhCCCcEeEEEEeCCCCCCCHHHHHHHHHHHHHcCCee
Confidence 346788889999999975 7432 1111 112456678899999999874
No 118
>2wzm_A Aldo-keto reductase; oxidoreductase; HET: NA7; 1.64A {Mycobacterium smegmatis} PDB: 2wzt_A
Probab=20.74 E-value=1.3e+02 Score=26.84 Aligned_cols=47 Identities=13% Similarity=0.042 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHhhcCccc-Cccc-cCCCh--hhHHHHHHHHHHHHhCCCee
Q 046127 158 DVVSQAYKTLWKDLDIAY-DKFI-RTTEP--KHEAIVKEFYSSVLANGDIY 204 (345)
Q Consensus 158 ~~~~~~~~~~l~~lgI~~-D~f~-~T~~~--~~~~~v~~~~~~L~~kG~iy 204 (345)
+.+.+.+.+.|++||+++ |.+. +--++ .....+.+.+.+|.+.|.|-
T Consensus 92 ~~v~~~~~~SL~rL~~dyiDl~llH~p~~~~~~~~e~~~al~~l~~~Gkir 142 (283)
T 2wzm_A 92 TSSQAAARASLERLGLDYVDLYLIHWPGGDTSKYVDSWGGLMKVKEDGIAR 142 (283)
T ss_dssp HHHHHHHHHHHHHHTCSCEEEEEECCCTTCHHHHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHHHHHhCCCCEeEEEEcCCCCCCCCHHHHHHHHHHHHHcCCcc
Confidence 557788999999999985 7432 11121 23456778899999999974
No 119
>2bp1_A Aflatoxin B1 aldehyde reductase member 2; oxidoreductase, aldo-keto reductase family 7, SSA reductase, barrel; HET: FLC NDP; 2.4A {Homo sapiens}
Probab=20.70 E-value=1.1e+02 Score=28.51 Aligned_cols=47 Identities=17% Similarity=0.157 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHhhcCccc-Cccc-cCCC-hhhHHHHHHHHHHHHhCCCee
Q 046127 158 DVVSQAYKTLWKDLDIAY-DKFI-RTTE-PKHEAIVKEFYSSVLANGDIY 204 (345)
Q Consensus 158 ~~~~~~~~~~l~~lgI~~-D~f~-~T~~-~~~~~~v~~~~~~L~~kG~iy 204 (345)
+.+.+.+.+.|++||+++ |.+. +--+ ..-.+.+.+.+.+|.+.|.|-
T Consensus 118 ~~i~~~~e~SL~rLg~dyiDl~~lH~p~~~~~~~e~~~aL~~l~~~Gkir 167 (360)
T 2bp1_A 118 DSVRSQLETSLKRLQCPQVDLFYLHAPDHGTPVEETLHACQRLHQEGKFV 167 (360)
T ss_dssp HHHHHHHHHHHHHHTCSCEEEEEECSCCTTSCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHHHHHhCCCeEeEEEecCCCCCCCHHHHHHHHHHHHHCCCcc
Confidence 456788899999999985 7432 1111 112356778999999999874
No 120
>3lut_A Voltage-gated potassium channel subunit beta-2; voltage gating, potassium channel, KV1.2, gating charges, no analysis, ION transport; HET: NAP; 2.90A {Rattus norvegicus}
Probab=20.47 E-value=1.1e+02 Score=28.49 Aligned_cols=47 Identities=13% Similarity=0.169 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHhhcCccc-Cccc-c-CCChhhHHHHHHHHHHHHhCCCee
Q 046127 158 DVVSQAYKTLWKDLDIAY-DKFI-R-TTEPKHEAIVKEFYSSVLANGDIY 204 (345)
Q Consensus 158 ~~~~~~~~~~l~~lgI~~-D~f~-~-T~~~~~~~~v~~~~~~L~~kG~iy 204 (345)
+.+.+.+.+.|++||+++ |.+. + .......+.+.+.+.+|.+.|.|-
T Consensus 134 ~~i~~~~e~SL~rLg~dyiDl~~lH~pd~~~~~~e~~~al~~l~~~Gkir 183 (367)
T 3lut_A 134 KHIIEGLKASLERLQLEYVDVVFANRPDPNTPMEETVRAMTHVINQGMAM 183 (367)
T ss_dssp HHHHHHHHHHHHHHTCSCEEEEEESSCCTTSCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHHHHHhCCCccceEEecCCCCCCCHHHHHHHHHHHHHcCCee
Confidence 446778899999999975 7432 1 111123455778999999999974
No 121
>3n2t_A Putative oxidoreductase; aldo/keto reductase superfamily, AKR, AKR11B4, TIM barrel; 2.00A {Gluconobacter oxydans} SCOP: c.1.7.0
Probab=20.41 E-value=1.1e+02 Score=28.23 Aligned_cols=47 Identities=9% Similarity=0.046 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHhhcCccc-Cccc-c-CCChhhHHHHHHHHHHHHhCCCee
Q 046127 158 DVVSQAYKTLWKDLDIAY-DKFI-R-TTEPKHEAIVKEFYSSVLANGDIY 204 (345)
Q Consensus 158 ~~~~~~~~~~l~~lgI~~-D~f~-~-T~~~~~~~~v~~~~~~L~~kG~iy 204 (345)
+.+.+.+.+.|++||+++ |.+. . .....-...+.+.+.+|.++|.|-
T Consensus 122 ~~i~~~~e~SL~rLg~dyiDl~~lH~p~~~~~~~e~~~al~~l~~~Gkir 171 (348)
T 3n2t_A 122 ARIRKEVEDSLRRLRVETIDLEQIHWPDDKTPIDESARELQKLHQDGKIR 171 (348)
T ss_dssp HHHHHHHHHHHHHHTCSSEEEEEESSCCTTSCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHHHHHhCCCcEEEEEecCCCCCCCHHHHHHHHHHHHHhCcce
Confidence 456788889999999975 7432 1 111122456778899999999875
No 122
>1h7b_A Anaerobic ribonucleotide-triphosphate reductase large chain; oxidoreductase, allosteric regulation, substrate specificity; 2.45A {Bacteriophage T4} SCOP: c.7.1.3 PDB: 1h79_A* 1h7a_A* 1h78_A 1hk8_A*
Probab=20.36 E-value=57 Score=33.19 Aligned_cols=48 Identities=13% Similarity=0.104 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHhCCCeeec-ccCcccccCCCCccchhhhh-cCCcCCCCCC
Q 046127 187 EAIVKEFYSSVLANGDIYKA-DYEGLYCVNCEEYKDEKELL-ENQCCPIHLK 236 (345)
Q Consensus 187 ~~~v~~~~~~L~~kG~iy~~-~~~~~yc~~c~~~l~d~el~-~~~~c~~~~~ 236 (345)
.+.+.++++...+ |.-|-. ..+.-+|+.|+ ++.+-.+. +...||.||.
T Consensus 517 ~~a~~~lv~~~~~-~i~Y~~~n~~~~~C~~CG-y~~~~~~~~~~~~CP~Cg~ 566 (605)
T 1h7b_A 517 LKGLEAVWDYAAQ-HLDYFGVNMPVDKCFTCG-STHEMTPTENGFVCSICGE 566 (605)
T ss_dssp HHHHHHHHHHHHH-HCSEEEEECCEEET------------------------
T ss_pred HHHHHHHHHHHHh-CCCeEEeCCCCccCcccC-CcCccCccccCCcCCCCCC
Confidence 3566667776665 555555 45677899999 44432221 1246999995
No 123
>1e8j_A Rubredoxin; iron-sulfur-protein, zinc-substitution, thermostability; NMR {Desulfovibrio gigas} SCOP: g.41.5.1 PDB: 1rdg_A 2dsx_A 1spw_A
Probab=20.35 E-value=62 Score=21.72 Aligned_cols=28 Identities=21% Similarity=0.392 Sum_probs=18.6
Q ss_pred cccccCCCCccchhh---------------hhcCCcCCCCCCC
Q 046127 210 GLYCVNCEEYKDEKE---------------LLENQCCPIHLKP 237 (345)
Q Consensus 210 ~~yc~~c~~~l~d~e---------------l~~~~~c~~~~~p 237 (345)
.|-|..|+-.+++.+ +-++-.|+.|+.+
T Consensus 3 ~y~C~~CGyvYd~~~Gdp~~gi~pGt~f~~lP~dw~CP~Cg~~ 45 (52)
T 1e8j_A 3 IYVCTVCGYEYDPAKGDPDSGIKPGTKFEDLPDDWACPVCGAS 45 (52)
T ss_dssp CEECSSSCCCCCTTTCCTTTTCCSSCCTTSSCTTCCCSSSCCC
T ss_pred cEEeCCCCeEEcCCcCCcccCcCCCCchHHCCCCCcCCCCCCc
Confidence 577888986665432 3334479999875
No 124
>3erp_A Putative oxidoreductase; funded by the national institute of allergy and infectious D of NIH contract number HHSN272200700058C; 1.55A {Salmonella enterica subsp}
Probab=20.20 E-value=1.1e+02 Score=28.26 Aligned_cols=47 Identities=11% Similarity=0.196 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHhhcCccc-Cccc-cCCC-hhhHHHHHHHHHHHHhCCCee
Q 046127 158 DVVSQAYKTLWKDLDIAY-DKFI-RTTE-PKHEAIVKEFYSSVLANGDIY 204 (345)
Q Consensus 158 ~~~~~~~~~~l~~lgI~~-D~f~-~T~~-~~~~~~v~~~~~~L~~kG~iy 204 (345)
+.+.+.+.+.|++||+++ |.+. .--+ ..-.+.+.+.+.+|.+.|.|-
T Consensus 135 ~~i~~~~e~SL~rLg~dyiDl~~lH~p~~~~~~~e~~~aL~~l~~~Gkir 184 (353)
T 3erp_A 135 KYLIASLDQSLKRMGLEYVDIFYHHRPDPETPLKETMKALDHLVRHGKAL 184 (353)
T ss_dssp HHHHHHHHHHHHHHTCSCEEEEEECSCCTTSCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHHHHHhCCCeEeEEEecCCCCCCCHHHHHHHHHHHHHCCCcc
Confidence 456788889999999975 7432 1111 112355678899999999974
Done!