RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 046127
(345 letters)
>2csx_A Methionyl-tRNA synthetase; ligase, riken structural
genomics/proteomics initiative, RSGI, structural
genomics, ligase/RNA complex; 2.70A {Aquifex aeolicus}
PDB: 2ct8_A*
Length = 497
Score = 420 bits (1081), Expect = e-146
Identities = 131/258 (50%), Positives = 164/258 (63%), Gaps = 11/258 (4%)
Query: 89 DPFVLTTPLYYVNAPPHMGSAYTTIAADAIARFQRLLGKKVIFITGTDEHGEKIAAAAAD 148
F +TTP+YYVN PH+G AYTTIAAD IAR+ RL V F+TGTDEHG KI A +
Sbjct: 5 KKFYVTTPIYYVNDVPHLGHAYTTIAADTIARYYRLRDYDVFFLTGTDEHGLKIQKKAEE 64
Query: 149 GGSSPSEHCDVVSQAYKTLWKDLDIAYDKFIRTTEPKHEAIVKEFYSSVLANGDIYKADY 208
G SP E D ++ +K LW+ L I Y KFIRTT+P H V++ + GDIY +Y
Sbjct: 65 LGISPKELVDRNAERFKKLWEFLKIEYTKFIRTTDPYHVKFVQKVFEECYKRGDIYLGEY 124
Query: 209 EGLYCVNCEEYKDEKELLENQCCPIHLKPCVARKEDNYFFALSKYQKLLEDTLTENPDFV 268
EG YCV CEE+K E EL E+ CPIH K C KE +YFF LSKYQ L + +NP+F+
Sbjct: 125 EGWYCVGCEEFKSEAELAEDHTCPIHQKKCEYIKEPSYFFRLSKYQDKLLELYEKNPEFI 184
Query: 269 QPSFRLNEVQGWIKSGLRDFSISR--ASVDWGIPVPNDNKQTIYVWFDALLGYISALSED 326
QP +R NE+ ++K GL+D S++R + V WGIPVP D + TIYVWFDAL YISAL +
Sbjct: 185 QPDYRRNEIISFVKQGLKDLSVTRPRSRVKWGIPVPFDPEHTIYVWFDALFNYISALEDK 244
Query: 327 RDQPSLRTAVSSGWPASL 344
+ WPA L
Sbjct: 245 VEI---------YWPADL 253
>4dlp_A Aminoacyl-tRNA synthetase, class I:aminoacyl-tRNA synthetase, class
IA:methionyl-tRNA...; structural genomics; 2.65A
{Brucella melitensis biovar abortus 230ORGANISM_TAXID}
Length = 536
Score = 420 bits (1083), Expect = e-145
Identities = 108/271 (39%), Positives = 151/271 (55%), Gaps = 7/271 (2%)
Query: 77 ATNTDKSGTEPADPFVLTTPLYYVNAPPHMGSAYTTIAADAIARFQRLLGKKVIFITGTD 136
T G+ + + +TT + Y N PH+G AY IA DA+ARFQRL G V F+TGTD
Sbjct: 13 EAQTQGPGSMSREKYYITTAIAYPNGKPHIGHAYELIATDAMARFQRLNGMDVYFLTGTD 72
Query: 137 EHGEKIAAAAADGGSSPSEHCDVVSQAYKTLWKDLDIAYDKFIRTTEPKHEAIVKEFYSS 196
EHG K+ +A G +P + D + A++ + + L+ + D +IRT+E +H + + +
Sbjct: 73 EHGIKMLQSARKEGITPRDLADRNTSAFRRMAEVLNSSNDDYIRTSEERHYKASQAIWQA 132
Query: 197 VLANGDIYKADYEGLYCVNCEEYKDEKEL---LENQCCPIHLKPCVARKEDNYFFALSKY 253
++ANGDIYK Y G Y V E Y E+E + P +E++YFF LS Y
Sbjct: 133 MVANGDIYKGGYAGWYSVRDEAYYGEEETEVRADGVRYGPQGTPVEWVEEESYFFRLSAY 192
Query: 254 QKLLEDTLTENPDFVQPSFRLNEVQGWIKSGLRDFSISRASVDWGIPVPNDNKQTIYVWF 313
Q L D NP F+ P+ R NE+ ++KSGL+D SISR + DWGIPVP D K +YVW
Sbjct: 193 QDKLLDLYENNPGFIMPAERRNEIVSFVKSGLKDLSISRTTFDWGIPVPGDEKHVMYVWV 252
Query: 314 DALLGYISALSEDRDQPSLRTAVSSGWPASL 344
DAL YI+AL + WPA+
Sbjct: 253 DALTNYITALGYPDTTDERW----AYWPANA 279
>2x1l_A Methionyl-tRNA synthetase; nucleotide-binding, protein
biosynthesis, ligase, aminoacyl- synthetase; HET: ADN
CXS; 2.30A {Mycobacterium smegmatis} PDB: 2x1m_A*
Length = 524
Score = 419 bits (1079), Expect = e-145
Identities = 97/269 (36%), Positives = 139/269 (51%), Gaps = 7/269 (2%)
Query: 80 TDKSGTEPADPFVLTTPLYYVNAPPHMGSAYTTIAADAIARFQRLLGKKVIFITGTDEHG 139
++PF +TT + Y N PH+G AY IA DAIARF+RL G V ++TGTD HG
Sbjct: 3 HHHHHHGGSEPFYITTAIAYPNGVPHIGHAYEYIATDAIARFKRLDGYDVRYLTGTDVHG 62
Query: 140 EKIAAAAADGGSSPSEHCDVVSQAYKTLWKDLDIAYDKFIRTTEPKHEAIVKEFYSSVLA 199
+K+A AA G +E S ++ L + L+I++D+FIRT++ H K + +
Sbjct: 63 QKMAETAAKEGIPAAELARRNSDVFQRLQEKLNISFDRFIRTSDADHYEASKAIWKRMAD 122
Query: 200 NGDIYKADYEGLYCVNCEEYKDEKELLE----NQCCPIHLKPCVARKEDNYFFALSKYQK 255
GDIY Y+G Y + E + E E E + P +E YFF LS Y
Sbjct: 123 AGDIYLDAYKGWYSIRDERFFTENETTEQPDGTRIATETGAPVTWTEEQTYFFRLSAYTD 182
Query: 256 LLEDTLTENPDFVQPSFRLNEVQGWIKSGLRDFSISRASVDWGIPVPNDNKQTIYVWFDA 315
L E+P+F+ P R NE+ ++ GL+D SISR + DWG+PVP+ +YVW DA
Sbjct: 183 RLLALYEEHPEFIGPDARRNEIVSFVSGGLKDLSISRTTFDWGVPVPDHPDHVMYVWVDA 242
Query: 316 LLGYISALSEDRDQPSLRTAVSSGWPASL 344
L Y++ + + WPA L
Sbjct: 243 LTNYLTGVGFPDTESES---FRRYWPADL 268
>2d5b_A Methionyl-tRNA synthetase; rossmann fold, class 1A AARS, isomerase,
structural genomics, NPPSFA; 1.80A {Thermus
thermophilus} SCOP: a.27.1.1 c.26.1.1 PDB: 1woy_A 1a8h_A
2d54_A
Length = 500
Score = 413 bits (1065), Expect = e-143
Identities = 122/257 (47%), Positives = 156/257 (60%), Gaps = 8/257 (3%)
Query: 90 PFVLTTPLYYVNAPPHMGSAYTTIAADAIARFQRLLGKKVIFITGTDEHGEKIAAAAADG 149
F +TTP+YYVNA PH+G AYTT+ AD +AR+ RL G + F+TGTDEHGE + AA
Sbjct: 4 VFYVTTPIYYVNAEPHLGHAYTTVVADFLARWHRLDGYRTFFLTGTDEHGETVYRAAQAA 63
Query: 150 GSSPSEHCDVVSQAYKTLWKDLDIAYDKFIRTTEPKHEAIVKEFYSSVLANGDIYKADYE 209
G P D VS +K W L IAYD FIRTTE +H+ +V+ V GDIY +YE
Sbjct: 64 GEDPKAFVDRVSGRFKRAWDLLGIAYDDFIRTTEERHKKVVQLVLKKVYEAGDIYYGEYE 123
Query: 210 GLYCVNCEEYKDEKELLENQCCPIHLKPCVARKEDNYFFALSKYQKLLEDTLTENPDFVQ 269
GLYCV+CE + EKEL+E CPIH +P RKE NYFF + KY+ L++ + ENPD ++
Sbjct: 124 GLYCVSCERFYTEKELVEG-LCPIHGRPVERRKEGNYFFRMEKYRPWLQEYIQENPDLIR 182
Query: 270 PSFRLNEVQGWIKSGLRDFSISRA--SVDWGIPVPNDNKQTIYVWFDALLGYISALSEDR 327
P NEV + + D SISR V WGIP+P D +VWFDALL Y+SAL
Sbjct: 183 PEGYRNEVLAMLAEPIGDLSISRPKSRVPWGIPLPWDENHVTFVWFDALLNYVSALDYPE 242
Query: 328 DQPSLRTAVSSGWPASL 344
+ A + WP +
Sbjct: 243 GE-----AYRTFWPHAW 254
>3kfl_A Methionyl-tRNA synthetase; parasite, aminoacyl-tRNA synthetase,
tRNA ligase metrs, methionine, translation, ATP-binding;
HET: ME8; 2.00A {Leishmania major}
Length = 564
Score = 410 bits (1055), Expect = e-141
Identities = 94/271 (34%), Positives = 144/271 (53%), Gaps = 16/271 (5%)
Query: 90 PFVLTTPLYYVNAPPHMGSAYTTIAADAIARFQRLLGKKVIFITGTDEHGEKIAAAAADG 149
F TTP+YYVNA PH+G Y+T+ D + R+ R+ G++V +TGTDEHG+K+A AAA
Sbjct: 27 VFFATTPIYYVNASPHIGHVYSTLIVDVLGRYHRVKGEEVFVMTGTDEHGQKVAEAAAKQ 86
Query: 150 GSSPSEHCDVVSQAYKTLWKDLDIAYDKFIRTTEPKHEAIVKEFYSSVLANGDIYKADYE 209
G SP + VS +K +++++ + FIRTT P HE +V++ + + A GDIY YE
Sbjct: 87 GVSPMDFTTSVSSEFKQCFQEMNYDMNYFIRTTNPTHEKLVQDIWKKLAAKGDIYLGKYE 146
Query: 210 GLYCVNCEEYKDEKELLENQC--------CPIHLKPCVARKEDNYFFALSKYQKLLEDTL 261
G Y V+ E + + + + +E+NY F LS +++ L
Sbjct: 147 GWYSVSDESFLTAQNVADGVDRDGKPCKVSLESGHVVTWVEEENYMFRLSAFRERLLKYF 206
Query: 262 TENPDFVQPSFRLNEVQGWIKSGLRDFSISRA---SVDWGIPVPNDNKQTIYVWFDALLG 318
++P+ + P FR EV ++ GL D SISR ++W IPVP D + IYVW DAL
Sbjct: 207 HDHPNCIVPEFRRREVIKTVEKGLFDLSISRKRESVMNWSIPVPGDERHCIYVWLDALFN 266
Query: 319 YISAL-----SEDRDQPSLRTAVSSGWPASL 344
Y + ++ + + WPA +
Sbjct: 267 YYTGALTRVATDGTETLDEDHHALNRWPADV 297
>3tun_A Methionyl-tRNA synthetase; aminoacyl-tRNA synthetase, AARS, metrs,
parasite, protein-IN complex, translation, nucleotide
binding; HET: C13; 2.55A {Trypanosoma brucei}
Length = 542
Score = 321 bits (824), Expect = e-106
Identities = 91/272 (33%), Positives = 142/272 (52%), Gaps = 17/272 (6%)
Query: 90 PFVLTTPLYYVNAPPHMGSAYTTIAADAIARFQRLLGKKVIFITGTDEHGEKIAAAAADG 149
F +T+P+YYVNA PH+G Y+T+ D I R+ R+ G++V +TGTDEHG+K+A AA
Sbjct: 10 VFFVTSPIYYVNAAPHIGHVYSTLITDVIGRYHRVKGERVFALTGTDEHGQKVAEAAKQK 69
Query: 150 GSSPSEHCDVVSQAYKTLWKDLDIAYDKFIRTTEPKHEAIVKEFYSSVLANGDIYKADYE 209
SP + V+ +K ++ +D + D FIRTT +H+A+VKE ++ + GDIY YE
Sbjct: 70 QVSPYDFTTAVAGEFKKXFEQMDYSIDYFIRTTNEQHKAVVKELWTKLEQKGDIYLGRYE 129
Query: 210 GLYCVNCEEYKDEKELLENQC--------CPIHLKPCVARKEDNYFFALSKYQKLLEDTL 261
G Y ++ E + + + + E+NY F LS +++ L +
Sbjct: 130 GWYSISDESFLTPQNITDGVDKDGNPCKVSLESGHVVTWVSEENYMFRLSAFRERLLEWY 189
Query: 262 TENPDFVQPSFRLNEVQGWIKSGLRDFSISRA---SVDWGIPVPNDNKQTIYVWFDALLG 318
NP + P FR EV ++ GL D S+SRA +W IPVP + +YVW DAL
Sbjct: 190 HANPGCIVPEFRRREVIRAVEKGLPDLSVSRARATLHNWAIPVPGNPDHXVYVWLDALTN 249
Query: 319 YISALSEDRDQPSLRTAVSSG------WPASL 344
Y++ D+ ++ +PA +
Sbjct: 250 YLTGSRLRVDESGKEVSLVDDFNELERFPADV 281
>1rqg_A Methionyl-tRNA synthetase; translation, dimerization, ligase; 2.90A
{Pyrococcus abyssi} SCOP: a.27.1.1 c.26.1.1 g.41.1.1
Length = 722
Score = 226 bits (579), Expect = 1e-68
Identities = 82/268 (30%), Positives = 128/268 (47%), Gaps = 37/268 (13%)
Query: 91 FVLTTPLYYVNAPPHMG-SAYTTIAADAIARFQRLLGKKVIFITGTDEHGEKIAAAAADG 149
+++T+ L Y N P H G A + AD R+ RL G+ V+FI GTDEHG I+ A
Sbjct: 4 YMVTSALPYANGPIHAGHLAGAYLPADIFVRYLRLKGEDVVFICGTDEHGTPISFRALKE 63
Query: 150 GSSPSEHCDVVSQAYKTLWKDLDIAYDKFIRTTEPKHEAIVKEFYSSVLANGDIYKADYE 209
G SP E D + K ++ I++D F RT P H + +EF+ NG + K +
Sbjct: 64 GRSPREIVDEFHEQIKITFQRAKISFDFFGRTELPIHYKLSQEFFLKAYENGHLVKKVTK 123
Query: 210 GLYCVNCEE-------------------YKDEKEL---------LENQCCPIHLKPCVAR 241
YC + + D+ E+ L N C I +P R
Sbjct: 124 QAYCEHDKMFLPDRFVIGTCPYCGAEDQKGDQCEVCGRPLTPEILINPRCAICGRPISFR 183
Query: 242 KEDNYFFALSKYQKLLEDTLTENPDFVQPSFRLNEVQGWIKSGLRDFSISRASVDWGIPV 301
+Y+ + + + L+ + + P +P+ + N V WI+ GL + +I+R ++WGIPV
Sbjct: 184 DSAHYYIKMQDFAERLKRWIEKQP--WKPNVK-NMVLSWIEEGLEERAITR-DLNWGIPV 239
Query: 302 PNDNK----QTIYVWFDALLGYISALSE 325
P D + + +YVWF+A +GYIS E
Sbjct: 240 PLDEEDMKGKVLYVWFEAPIGYISITIE 267
>3h99_A Methionyl-tRNA synthetase; rossmann fold, aminoacyl-tRNA
synthetase, ATP-binding, ligas binding,
nucleotide-binding, protein biosynthesis; HET: CIT;
1.40A {Escherichia coli} PDB: 3h97_A* 3h9b_A* 1f4l_A
3h9c_A* 1pfv_A* 1pfu_A 1p7p_A* 1pfw_A* 1pfy_A* 1pg0_A*
1pg2_A* 1qqt_A 1mea_A 1med_A
Length = 560
Score = 176 bits (449), Expect = 8e-51
Identities = 66/268 (24%), Positives = 102/268 (38%), Gaps = 47/268 (17%)
Query: 94 TTPLYYVNAPPHMGSAYTTIAADAIARFQRLLGKKVIFITGTDEHGEKIAAAAADGGSSP 153
T Y N H+G I AD R+QR+ G +V FI D HG I A G +P
Sbjct: 23 TCASPYANGSIHLGHMLEHIQADVWVRYQRMRGHEVNFICADDAHGTPIMLKAQQLGITP 82
Query: 154 SEHCDVVSQAYKTLWKDLDIAYDKFIRTTEPKHEAIVKEFYSSVLANGDIYKADYEGLYC 213
+ +SQ ++T + +I+YD + T ++ + + YS + NG I LY
Sbjct: 83 EQMIGEMSQEHQTDFAGFNISYDNYHSTHSEENRQLSELIYSRLKENGFIKNRTISQLYD 142
Query: 214 VNCEE-------------------YKDEKELLENQC--CPIHLKP-------C------- 238
Y D C C P
Sbjct: 143 PEKGMFLPDRFVKGTCPKCKSPDQYGD-------NCEVCGATYSPTELIEPKSVVSGATP 195
Query: 239 VARKEDNYFFALSKYQKLLEDTLTENPDFVQPSFRLNEVQGWIKSGLRDFSISRASVDW- 297
V R +++FF L + ++L+ Q N++Q W +SGL+ + ISR +
Sbjct: 196 VMRDSEHFFFDLPSFSEMLQAWTRSGAL--QEQVA-NKMQEWFESGLQQWDISR-DAPYF 251
Query: 298 GIPVPNDNKQTIYVWFDALLGYISALSE 325
G +PN + YVW DA +G + +
Sbjct: 252 GFEIPNAPGKYFYVWLDAPIGLMGSFKN 279
>1wz2_A Leucyl-tRNA synthetase; ligase, riken structural
genomics/proteomics initiativ structural genomics,
ligase-RNA complex; 3.21A {Pyrococcus horikoshii}
Length = 967
Score = 59.6 bits (144), Expect = 7e-10
Identities = 19/67 (28%), Positives = 27/67 (40%)
Query: 80 TDKSGTEPADPFVLTTPLYYVNAPPHMGSAYTTIAADAIARFQRLLGKKVIFITGTDEHG 139
+ F +T Y++ H+G A T D IARF+R+ G V+F G
Sbjct: 25 PNIRDKPKEKKFYITVAFPYLSGHLHVGHARTYTIPDVIARFKRMQGYNVLFPMAWHITG 84
Query: 140 EKIAAAA 146
I A
Sbjct: 85 SPIVGIA 91
>1wkb_A Leucyl-tRNA synthetase; leucine, aminoacyl-tRNA, editing, amino
acid, aminoacylation, trnaLeu, structural genomics;
2.05A {Pyrococcus horikoshii}
Length = 810
Score = 58.0 bits (140), Expect = 2e-09
Identities = 19/67 (28%), Positives = 27/67 (40%)
Query: 80 TDKSGTEPADPFVLTTPLYYVNAPPHMGSAYTTIAADAIARFQRLLGKKVIFITGTDEHG 139
+ F +T Y++ H+G A T D IARF+R+ G V+F G
Sbjct: 25 PNIRDKPKEKKFYITVAFPYLSGHLHVGHARTYTIPDVIARFKRMQGYNVLFPMAWHITG 84
Query: 140 EKIAAAA 146
I A
Sbjct: 85 SPIVGIA 91
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 54.5 bits (130), Expect = 3e-08
Identities = 53/385 (13%), Positives = 112/385 (29%), Gaps = 116/385 (30%)
Query: 15 EEQTLSLQKEFEEMAARINYSIQ-----NSLWLL----NPLHSKA---------TTHFRN 56
+ + +++ + A + ++ N L +L N A TT F+
Sbjct: 217 SDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQ 276
Query: 57 -------------RLKFRQNLFSLSKG-AVFCSYATNTDKSGTEPAD-P--FVLTTPLYY 99
L + + ++ Y P D P + T P
Sbjct: 277 VTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYL------DCRPQDLPREVLTTNPR-- 328
Query: 100 VNAPPHMGSAYTTIAA---DAIARFQRLLGKKVIFITGTDEHGEKIAAAAADGGSSPSE- 155
+ IA D +A + K V D+ I ++ P+E
Sbjct: 329 ---------RLSIIAESIRDGLATWDNW--KHV----NCDKLTTIIESSLNV--LEPAEY 371
Query: 156 ------------HCDVVSQAYKTLWKDLDIAYDKFIRTTEPKHEAIVKEFYSSVLANGDI 203
+ + +W D+ ++ +V + + L
Sbjct: 372 RKMFDRLSVFPPSAHIPTILLSLIWFDVI--------KSDV--MVVVNKLHKYSLVEKQP 421
Query: 204 YKADYE--GLYCVNCEEYKDEKEL----LENQCCPIHLKP--CVARKEDNYFFA-----L 250
++ +Y + ++E L +++ P + D YF++ L
Sbjct: 422 KESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHL 481
Query: 251 SKYQKLLEDTLTE----NPDFVQPSFRLNEVQGWIKSG-----LRDFSISRASVDWGIPV 301
+ TL + F++ R ++ W SG L+ + +
Sbjct: 482 KNIEHPERMTLFRMVFLDFRFLEQKIR-HDSTAWNASGSILNTLQQLKFYKPYI-----C 535
Query: 302 PNDNKQTIYVWFDALLGYISALSED 326
ND K V +A+L ++ + E+
Sbjct: 536 DNDPKYERLV--NAILDFLPKIEEN 558
Score = 37.9 bits (87), Expect = 0.004
Identities = 34/226 (15%), Positives = 65/226 (28%), Gaps = 77/226 (34%)
Query: 11 VKHSEEQTLSLQKEFEEMAARINYSIQNSLWLLNP----LHSKATTHFRNRLKFRQNLFS 66
V + +L ++K+ +E I SI L + LH H+ F +
Sbjct: 408 VNKLHKYSL-VEKQPKESTISI-PSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLI 465
Query: 67 LSKG-AVFCSYATNTDKSGTEPADPFVLTTPLYYVNAPPHMGSAYTTIAADAIARFQRL- 124
F S+ + + H+ + + + F+ +
Sbjct: 466 PPYLDQYFYSH--------------------IGH-----HLKNIE---HPERMTLFRMVF 497
Query: 125 -----LGKKVIFITGTDEHGEKIAAAAADGGSSPSEHCDVVSQAYKTLWKDLDIAYDKFI 179
L +K+ T A A G + L Y +I
Sbjct: 498 LDFRFLEQKIRH-DST--------AWNASGSILN-------------TLQQLKF-YKPYI 534
Query: 180 RTTEPKHEAIVK---EF---YSSVLANG---DIYK----ADYEGLY 212
+PK+E +V +F L D+ + A+ E ++
Sbjct: 535 CDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIALMAEDEAIF 580
Score = 37.5 bits (86), Expect = 0.006
Identities = 34/181 (18%), Positives = 62/181 (34%), Gaps = 37/181 (20%)
Query: 156 HCDVVSQAYKTLWKD-LDIAYDKFIRTTEPKHEAIVKEFYSSVLANGDIYKADYEGLYCV 214
H D + ++ +KD L + D F+ + K V++ S+L+ K + + +
Sbjct: 6 HMDFETGEHQYQYKDILSVFEDAFVDNFDCKD---VQDMPKSILS-----KEEIDHII-- 55
Query: 215 NCEEYKDEKELLENQCCPIHLKPCVARKEDNYFFALSKYQKLLEDTLTENPDFVQPSFRL 274
KD L + K++ QK +E+ L N F+ +
Sbjct: 56 ---MSKDAVSGTL------RLFWTLLSKQEE------MVQKFVEEVLRINYKFLMSPIKT 100
Query: 275 NEVQGWIKSGLRDFSISRASVDWGIPVPNDNKQTI--YVW-FDALLGYISALSEDRDQPS 331
+ Q S + I + + NDN+ V L AL E R +
Sbjct: 101 EQRQ---PSMMTRMYIEQRDRLY-----NDNQVFAKYNVSRLQPYLKLRQALLELRPAKN 152
Query: 332 L 332
+
Sbjct: 153 V 153
Score = 35.6 bits (81), Expect = 0.027
Identities = 36/275 (13%), Positives = 76/275 (27%), Gaps = 87/275 (31%)
Query: 89 DPFVLTTPLYYVNAPPHMGSAYTT-------IAADAIARFQRLL------GKKVI--FIT 133
D FV V S + ++ DA++ RL ++++ F+
Sbjct: 27 DAFVDNFDCKDV--QDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVE 84
Query: 134 GTDEHGEK-IAAAAADGGSSPSEHCDVVSQAYKTLWKDLDIAYDKFIRTTEPKHEAIVKE 192
K + + PS + + L+ D + + K+ + + + +
Sbjct: 85 EVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQV-FAKYNVSRLQPYLKLRQA 143
Query: 193 FYS-----------------SVLA-----NGDIYKADYEGLYCVNCEEYKDEKELLENQC 230
+ +A + + ++ +N + + +LE
Sbjct: 144 LLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEML- 202
Query: 231 CPIHLKPCVARKEDNYFFALSKYQKL---LEDTLTENPDFVQ-PSFRLNEVQGWIKSGLR 286
QKL ++ T D R++ I++ LR
Sbjct: 203 -----------------------QKLLYQIDPNWTSRSDHSSNIKLRIH----SIQAELR 235
Query: 287 DFSISRASVDWGIPVPN-----DNKQTIYVW--FD 314
S+ P N N Q W F+
Sbjct: 236 RLLKSK-------PYENCLLVLLNVQNAKAWNAFN 263
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 47.0 bits (111), Expect = 7e-06
Identities = 63/369 (17%), Positives = 99/369 (26%), Gaps = 144/369 (39%)
Query: 25 FEEMAARINYSIQNSLWLLNPLHSKATTHFRNRLKFRQNLFSL-SKGAVFCSYATNTDKS 83
FEE+ R Y + L + L + ++ + + ++G + N
Sbjct: 170 FEEL--RDLYQTYHVL--VGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPS-- 223
Query: 84 GTEPADPFVLTTPL------------YYVNA------PPHM--------GSAYTTIAADA 117
P ++L+ P+ Y V A P + G + + A A
Sbjct: 224 -NTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVA 282
Query: 118 IAR------FQRLLGK--KVIFITG-------------------TDEHGEKIAAAAADGG 150
IA F + K V+F G + E+ E G
Sbjct: 283 IAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNE--------GV 334
Query: 151 SSP--SEHCDVVSQAYKTLWKDLDIAY-DKFIRTTE---PKHEAIVKEFYSSVLANGDIY 204
SP S + +L ++ T P + + L NG
Sbjct: 335 PSPMLS-----I--------SNLTQEQVQDYVNKTNSHLPAGKQV-----EISLVNG--- 373
Query: 205 KAD-------YEGLYCVNCEEYKDEKELLENQCCPIHLK----PCVARKE--DNYFFAL- 250
A + LY +N L P L P RK N F L
Sbjct: 374 -AKNLVVSGPPQSLYGLNLT--------LRKAKAPSGLDQSRIPFSERKLKFSNRF--LP 422
Query: 251 ------SKY-----QKLLEDTLTENPDFVQPSFR-----------LNEVQGWIKSGLRDF 288
S + +D + N F + L + G I + D
Sbjct: 423 VASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIVD- 481
Query: 289 SISRASVDW 297
I R V W
Sbjct: 482 CIIRLPVKW 490
Score = 45.8 bits (108), Expect = 2e-05
Identities = 66/434 (15%), Positives = 123/434 (28%), Gaps = 179/434 (41%)
Query: 32 INY-SIQNSLWLLNPLHSKATTHFRNRLK--FRQNLFSLSKGAVFCSYATNTDKSGTEPA 88
+++ S+++ L + A+ +L+ F + L T + EP
Sbjct: 11 LSHGSLEHVLLVPTASFFIAS-----QLQEQFNKIL----------PEPTEGFAADDEPT 55
Query: 89 DPFVLTTP-LYYVN--APPHMGSAYTTIAADAIARFQRLLGKKVIFITGTDEHGEKIAA- 144
P L L YV+ P + + + F+ ++ G D H +AA
Sbjct: 56 TPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENC------YLEGNDIHA--LAAK 107
Query: 145 ----------------------------------------AAAD---------GGSSPSE 155
A + GG ++
Sbjct: 108 LLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTD 167
Query: 156 HC-----DVVSQAYKTLWKDL-DIAYDKFIRTTEPKHEAIVKEFYSSVLANGDIYK---- 205
D+ Q Y L DL + + +A ++ ++ L +I +
Sbjct: 168 DYFEELRDL-YQTYHVLVGDLIKFSAETLSELIRTTLDA--EKVFTQGL---NILEWLEN 221
Query: 206 ------ADYE----------GL-----YCVNCEEY-KDEKELLEN-QCCPIHLKPCV--- 239
DY G+ Y V + EL + H + V
Sbjct: 222 PSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAV 281
Query: 240 ----ARKEDNYFFALSKYQKLLEDTLTENPDFVQPSFRLNEVQGWIKSGLR--------- 286
+++F ++ K +L F +I G+R
Sbjct: 282 AIAETDSWESFFVSVRKAITVL--------------F-------FI--GVRCYEAYPNTS 318
Query: 287 -DFSISRASVDW--GIPVP----NDNKQTIYVWFDALLGYISA----LSEDRD-QPSL-- 332
SI S++ G+P P ++ Q + + Y++ L + + SL
Sbjct: 319 LPPSILEDSLENNEGVPSPMLSISNLTQ------EQVQDYVNKTNSHLPAGKQVEISLVN 372
Query: 333 --RTAVSSGWPASL 344
+ V SG P SL
Sbjct: 373 GAKNLVVSGPPQSL 386
Score = 35.0 bits (80), Expect = 0.040
Identities = 44/293 (15%), Positives = 78/293 (26%), Gaps = 102/293 (34%)
Query: 90 PFVLTTPLYYVNAPPHMGSAYTTI--AADAIARFQRLLGKKVIFITGTDEHGEKIAAAAA 147
P L+ H GS + + +L + F E E AA
Sbjct: 8 PLTLS----------H-GSLEHVLLVPTASFFIASQL---QEQFNKILPEPTEGFAAD-- 51
Query: 148 DGGSSPSEHCDVVSQAYKTLWKDLDIAYDKFI----RTTEPKH--------EAIVKEFYS 195
D ++P+E L KF+ EP + EF +
Sbjct: 52 DEPTTPAE-----------LVG-------KFLGYVSSLVEPSKVGQFDQVLNLCLTEFEN 93
Query: 196 SVLANGDIYKADYEGLYCVNCEEYKDEKELLENQCCPIHLKPCVARKEDNYFFALS---- 251
L DI+ +LL+ + + + NY A
Sbjct: 94 CYLEGNDIHAL---------------AAKLLQENDTTLVKTKELIK---NYITARIMAKR 135
Query: 252 KYQKLLEDTLTENPDFVQPSFRLNEV---QG----WIKSGLRD-FSISRASVD------- 296
+ K L + + +L + QG + + LRD + V
Sbjct: 136 PFDKKSNSALFRAVG--EGNAQLVAIFGGQGNTDDYFEE-LRDLYQTYHVLVGDLIKFSA 192
Query: 297 ---WGIPVPNDNKQTIYVW-FDALLGYISALSEDRDQPS---LRTA-VSSGWP 341
+ + + ++ + L L + P L + +S P
Sbjct: 193 ETLSELIRTTLDAEKVFTQGLNIL----EWLENPSNTPDKDYLLSIPIS--CP 239
Score = 31.9 bits (72), Expect = 0.41
Identities = 13/64 (20%), Positives = 25/64 (39%), Gaps = 11/64 (17%)
Query: 285 LRDFSISRASVDWGIPVPNDNKQTIYVWFDAL-L--GYISALSEDRDQPSLRTAVSSGWP 341
R ++S S++ + VP + +F A L + L E + + ++ P
Sbjct: 6 TRPLTLSHGSLEHVLLVPTAS------FFIASQLQEQFNKILPEPTEGFAADDEPTT--P 57
Query: 342 ASLT 345
A L
Sbjct: 58 AELV 61
>1ffy_A Isoleucyl-tRNA synthetase; protein-RNA complex, metal IONS, editing
tRNA synthetase, double-sieve, ligase/RNA, mupiroci;
HET: MRC; 2.20A {Staphylococcus aureus} SCOP: a.27.1.1
b.51.1.1 c.26.1.1 PDB: 1qu2_A* 1qu3_A*
Length = 917
Score = 39.4 bits (93), Expect = 0.001
Identities = 36/158 (22%), Positives = 58/158 (36%), Gaps = 44/158 (27%)
Query: 99 YVNAPPHMGSAYTTIAADAIARFQRLLGKKVIFITGTDEHG---E-KIAAAAADGGS-SP 153
Y N HMG A I D I R++ + G ++ G D HG E + D S
Sbjct: 58 YANGNLHMGHALNKILKDFIVRYKTMQGFYAPYVPGWDTHGLPIEQALTKKGVDRKKMST 117
Query: 154 SE---HCDVVSQAYKTLWKDLDIAYDKFIR------------TTEPKHEA-IVKEFYSSV 197
+E C + + +++ F R T +P++EA ++ F +
Sbjct: 118 AEFREKC----KEFALEQ--IELQKKDFRRLGVRGDFNDPYITLKPEYEAAQIRIFGE-M 170
Query: 198 LANGDIYKADYEGL----YCVNCE--------EYKDEK 223
G IYK G + + E EY D++
Sbjct: 171 ADKGLIYK----GKKPVYWSPSSESSLAEAEIEYHDKR 204
>1gax_A Valrs, valyl-tRNA synthetase; protein-RNA complex, rossmann fold,
coiled coil, riken structural genomics/proteomics
initiative, RSGI; HET: VAA; 2.90A {Thermus thermophilus}
SCOP: a.2.7.3 a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1ivs_A*
1iyw_A
Length = 862
Score = 37.9 bits (89), Expect = 0.005
Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 12/61 (19%)
Query: 82 KSGTEPADPFVLTTPLYYVNAPP------HMGSAYTTIAADAIARFQRLLGKKVIFITGT 135
+ PFV+ P PP HMG A DA+ R++R+ G + +++ GT
Sbjct: 27 ANPKSGKPPFVIFMP------PPNVTGSLHMGHALDNSLQDALIRYKRMRGFEAVWLPGT 80
Query: 136 D 136
D
Sbjct: 81 D 81
>1ile_A Ilers, isoleucyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken
structural genomics/proteom initiative, RSGI, structural
genomics; 2.50A {Thermus thermophilus} SCOP: a.27.1.1
b.51.1.1 c.26.1.1 PDB: 1jzq_A* 1jzs_A*
Length = 821
Score = 37.1 bits (87), Expect = 0.008
Identities = 12/41 (29%), Positives = 16/41 (39%)
Query: 99 YVNAPPHMGSAYTTIAADAIARFQRLLGKKVIFITGTDEHG 139
N PH+G A D R++ + G G D HG
Sbjct: 48 TANGLPHVGHAQARSYKDLFPRYKTMRGYYAPRRAGWDTHG 88
>3tqo_A Cysteinyl-tRNA synthetase; protein synthesis, ligase; 2.30A
{Coxiella burnetii}
Length = 462
Score = 35.6 bits (83), Expect = 0.021
Identities = 19/72 (26%), Positives = 30/72 (41%), Gaps = 9/72 (12%)
Query: 104 PHMGSAYTTIAADAIARFQRLLGKKVIF---ITGTDEHGEKIAAAAADGGSSPSEHCDVV 160
H+G + I D + R+ R+ G +V F IT D +KI A + SP+ +
Sbjct: 39 MHIGHGRSWIIFDMVVRYLRMRGYEVTFVRNITDID---DKIIKRAGENKESPAALAERF 95
Query: 161 SQAYKTLWKDLD 172
Q +D
Sbjct: 96 IQIL---HEDEK 104
>3c8z_A Cysteinyl-tRNA synthetase; cysteine ligase, rossmann fold, Cys-SA
inhibitor, zinc binding, ATP-binding, aminoacyl-tRNA
synthetase; HET: 5CA 1PE EPE; 1.60A {Mycobacterium
smegmatis}
Length = 414
Score = 34.9 bits (81), Expect = 0.033
Identities = 23/111 (20%), Positives = 42/111 (37%), Gaps = 15/111 (13%)
Query: 104 PHMGSAYTTIAADAIARFQRLLGKKVIF---ITGTDEHGEKIAAAAADGGSSPSEHCDVV 160
H+G A T + D + R G V + +T D + + A G D
Sbjct: 53 THLGHAATYLTFDLVHRLWLDAGHTVQYVQNVTDVD---DPLFERAERDGIDWRTLGDRE 109
Query: 161 SQAYKTLWKDLD----IAYDKFIRTTEPKHEAIVKEFYSSVLANGDIYKAD 207
+Q ++ +D+ + ++ T+ A V E +LA+G Y +
Sbjct: 110 TQLFR---EDMAALRVLPPHDYVAATD--AIAEVVEMVEKLLASGAAYIVE 155
>1li5_A Cysrs, cysteinyl-tRNA synthetase, transfer RNA-Cys; cysteine,
E.coli, ligase; 2.30A {Escherichia coli} SCOP: a.27.1.1
c.26.1.1 PDB: 1li7_A 1u0b_B
Length = 461
Score = 34.4 bits (80), Expect = 0.050
Identities = 23/72 (31%), Positives = 32/72 (44%), Gaps = 9/72 (12%)
Query: 104 PHMGSAYTTIAADAIARFQRLLGKKVIF---ITGTDEHGEKIAAAAADGGSSPSEHCDVV 160
H+G T +A D +AR+ R LG K+ + IT D +KI A + G S D +
Sbjct: 36 CHIGHGRTFVAFDVVARYLRFLGYKLKYVRNITDID---DKIIKRANENGESFVAMVDRM 92
Query: 161 SQAYKTLWKDLD 172
KD D
Sbjct: 93 IAEM---HKDFD 101
>4arc_A Leucine--tRNA ligase; ligase-RNA complex, nucleotide-binding,
protein biosynthesis I aminoacyl-tRNA synthetase,
ATP-binding; 2.00A {Escherichia coli} PDB: 4aq7_A
4ari_A* 4as1_A*
Length = 880
Score = 34.5 bits (80), Expect = 0.054
Identities = 15/28 (53%), Positives = 18/28 (64%), Gaps = 4/28 (14%)
Query: 105 HMG--SAYTTIAADAIARFQRLLGKKVI 130
HMG YT D IAR+QR+LGK V+
Sbjct: 69 HMGHVRNYT--IGDVIARYQRMLGKNVL 94
>2v0c_A Aminoacyl-tRNA synthetase; ligase, nucleotide-binding, protein
biosynthesis; HET: LMS ANZ; 1.85A {Thermus thermophilus}
PDB: 1h3n_A* 1obc_A* 1obh_A* 2bte_A* 2byt_A 2v0g_A*
Length = 878
Score = 33.7 bits (78), Expect = 0.085
Identities = 12/27 (44%), Positives = 16/27 (59%), Gaps = 4/27 (14%)
Query: 105 HMG--SAYTTIAADAIARFQRLLGKKV 129
HMG YT D +ARF+R+ G +V
Sbjct: 49 HMGHLKNYT--MGDVLARFRRMQGYEV 73
>1rli_A Trp repressor binding protein; structural genomics, PSI, protein
structure initiative, midwest center for structural
genomics, MCSG; 1.80A {Bacillus subtilis} SCOP: c.23.5.6
Length = 184
Score = 32.0 bits (73), Expect = 0.17
Identities = 13/88 (14%), Positives = 29/88 (32%), Gaps = 9/88 (10%)
Query: 88 ADPFVLTTPLYYVNAPPHMGSAYTTIAADAIARFQRLLGKKVIFITGTDEHGEKIAAAAA 147
+ TP+Y+ + I R+ + L K A A
Sbjct: 72 CHILIFATPIYWFGMSGTLKL--------FIDRWSQTLRDPRFPDFKQQMSV-KQAYVIA 122
Query: 148 DGGSSPSEHCDVVSQAYKTLWKDLDIAY 175
GG +P + Q ++ ++ + +++
Sbjct: 123 VGGDNPKIKGLPLIQQFEHIFHFMGMSF 150
>3sp1_A Cysteinyl-tRNA synthetase; structural genomics, seattle structural
genomics center for infectious disease, ssgcid, LYME
disease; HET: AMP; 2.55A {Borrelia burgdorferi}
Length = 501
Score = 31.4 bits (72), Expect = 0.49
Identities = 19/62 (30%), Positives = 28/62 (45%), Gaps = 10/62 (16%)
Query: 104 PHMGSAYTTIAADAIARFQRLLGKKVIFI---------TGTDEHGE-KIAAAAADGGSSP 153
H+G+ T I D + + R LG KV + TG + GE K+A A + G +
Sbjct: 56 AHIGNFRTYIFGDLLIKTLRFLGYKVNYAMNITDIGHLTGDLDDGEDKVAKTAREKGLTV 115
Query: 154 SE 155
E
Sbjct: 116 YE 117
>1f7u_A Arginyl-tRNA synthetase; RNA-protein complex, aminoacylation; HET:
PSU 1MG 2MG H2U M2G 5MC 5MU 1MA ARG; 2.20A
{Saccharomyces cerevisiae} SCOP: a.27.1.1 c.26.1.1
d.67.2.1 PDB: 1bs2_A* 1f7v_A*
Length = 607
Score = 31.1 bits (71), Expect = 0.50
Identities = 10/91 (10%), Positives = 28/91 (30%), Gaps = 21/91 (23%)
Query: 157 CDVVSQAYKTLWKDLDIAYDKFI---RTTEPKHEAIVKEFYSSVLANGDIYKADYEGLYC 213
+ + Y + L+I YD + + ++ + + D +G
Sbjct: 270 REFSIEKYIDTYARLNIKYDVYSGESQVSKESMLKAIDL-----FKEKGLTHED-KGAVL 323
Query: 214 VNCEEYKDEKELLENQCCPIHLKPCVARKED 244
++ ++ + L + +K D
Sbjct: 324 IDLTKFNKK------------LGKAIVQKSD 342
>3gvc_A Oxidoreductase, probable short-chain type dehydrogenase/reductase;
ssgcid, decode, niaid, UWPPG, SBRI, structural genomics;
2.45A {Mycobacterium tuberculosis}
Length = 277
Score = 30.2 bits (69), Expect = 0.75
Identities = 17/83 (20%), Positives = 23/83 (27%), Gaps = 24/83 (28%)
Query: 104 PHMGSAYTTIAADAIARFQRLLGKKVIFITG----------------------TDEHGEK 141
HMG+ L G KV +TG D G+
Sbjct: 7 HHMGTLEAQTQGPGSMNHPDLAG-KVAIVTGAGAGIGLAVARRLADEGCHVLCADIDGDA 65
Query: 142 IAAAAAD-GGSSPSEHCDVVSQA 163
AAA G + + DV +
Sbjct: 66 ADAAATKIGCGAAACRVDVSDEQ 88
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural
genomics, joint center F structural genomics, JCSG;
1.88A {Eubacterium rectale}
Length = 302
Score = 29.7 bits (66), Expect = 1.5
Identities = 17/152 (11%), Positives = 40/152 (26%), Gaps = 21/152 (13%)
Query: 76 YATNTDKSGTEPADPFVLTTPLYYVNAPPHMGSAYTTIAADAIARFQRLLGKKVIFITGT 135
Y N ++ T L + G T + D + L+G + ++
Sbjct: 69 YVRNNNQKITSQTFFSYDRNSLCRIKRN---GHGSTVLDPDP-CIYASLIGNYIYYLHYD 124
Query: 136 DEHGEKIAAAAADGGS------SPSEHCDVVSQAY-------KTLWK-DLDIAYDKFIRT 181
+ + DG C+ + + L++ D +
Sbjct: 125 TQTATSLYRIRIDGEEKKKIKNHYLFTCNTSDRYFYYNNPKNGQLYRYDTASQSEALFYD 184
Query: 182 TEPKHEAIVKE---FYSSVLANGDIYKADYEG 210
++ + +Y V + I +
Sbjct: 185 CNCYKPVVLDDTNVYYMDVNRDNAIVHVNINN 216
>3rfa_A Ribosomal RNA large subunit methyltransferase N; radical SAM,
S-adenosylmethionine, iron sulfur cluster,
oxidoreductase; HET: SAM; 2.05A {Escherichia coli} PDB:
3rf9_A*
Length = 404
Score = 29.5 bits (67), Expect = 1.6
Identities = 11/42 (26%), Positives = 16/42 (38%)
Query: 104 PHMGSAYTTIAADAIARFQRLLGKKVIFITGTDEHGEKIAAA 145
P G+ Y + I RF ++L G+ I AA
Sbjct: 313 PFPGAPYGRSSNSRIDRFSKVLMSYGFTTIVRKTRGDDIDAA 354
>2vld_A NUCS, UPF0286 protein pyrab01260; endonuclease, hydrolase; 2.60A
{Pyrococcus abyssi}
Length = 251
Score = 29.0 bits (64), Expect = 1.9
Identities = 17/90 (18%), Positives = 35/90 (38%), Gaps = 5/90 (5%)
Query: 243 EDNYFFALSKYQKLLEDTLTENPDFVQPSFRLNEVQGWIKSGLRDFSISRASVDWGIPVP 302
ED AL+ + + + + ENP ++ F+ + I+ G+ D G V
Sbjct: 116 EDYEELALTGSEAEMANLIFENPRVIEEGFKPIYREKPIRHGIVDVMGVDKD---GNIVV 172
Query: 303 NDNKQTI--YVWFDALLGYISALSEDRDQP 330
+ K+ + Y+ +L E+ +
Sbjct: 173 LELKRRKADLHAVSQMKRYVDSLKEEYGEN 202
>3g9w_C Integrin beta-1D; protein-protein complex, PH domain superfold,
PTB domain, HE bundle, intrinsically unstructured, cell
adhesion; 2.17A {Homo sapiens} PDB: 1kup_B 1kuz_B
Length = 52
Score = 26.0 bits (57), Expect = 3.0
Identities = 7/34 (20%), Positives = 14/34 (41%), Gaps = 5/34 (14%)
Query: 23 KEFEEMAARINYSIQNSLWLLNPLHSKATTHFRN 56
+FE+ + Q NP++ +F+N
Sbjct: 15 AKFEKEKMNAKWDTQE-----NPIYKSPINNFKN 43
>3ic9_A Dihydrolipoamide dehydrogenase; APC62701, colwellia psychrer 34H,
structural genomics, PSI-2; HET: FAD; 2.15A {Colwellia
psychrerythraea}
Length = 492
Score = 28.7 bits (65), Expect = 3.1
Identities = 8/78 (10%), Positives = 20/78 (25%), Gaps = 23/78 (29%)
Query: 106 MGSAY------TTI--AADAI---------ARFQRLLGKKVIFITGT-----DEHGEKIA 143
+G A + + ++ ++ ++ F E + +
Sbjct: 189 LGQALSRLGVIVKVFGRSGSVANLQDEEMKRYAEKTFNEEFYFDAKARVISTIEKEDAVE 248
Query: 144 AAAAD-GGSSPSEHCDVV 160
D G +E V
Sbjct: 249 VIYFDKSGQKTTESFQYV 266
>1efv_A Electron transfer flavoprotein; electron transport, glutaric
acidemia type II; HET: FAD AMP; 2.10A {Homo sapiens}
SCOP: c.26.2.3 c.31.1.2 PDB: 2a1u_A* 1t9g_R* 2a1t_R*
Length = 315
Score = 28.6 bits (65), Expect = 3.3
Identities = 17/61 (27%), Positives = 24/61 (39%), Gaps = 5/61 (8%)
Query: 114 AADAIARFQRLLGKKVIFITGTDEHGEKIAAAAADGGSSPSEHCDVVSQAYKTLWKDLDI 173
A +A+ + KV + GT AAA GGS+ SE S + W D +
Sbjct: 132 AGNALCTVKCDEKVKVFSVRGT-----SFDAAATSGGSASSEKASSTSPVEISEWLDQKL 186
Query: 174 A 174
Sbjct: 187 T 187
>1zk4_A R-specific alcohol dehydrogenase; short chain
reductases/dehydrogenases, magnesium dependence,
oxidoreductase; HET: NAP; 1.00A {Lactobacillus brevis}
SCOP: c.2.1.2 PDB: 1nxq_A* 1zjy_A* 1zjz_A* 1zk0_A*
1zk1_A* 1zk2_A 1zk3_A
Length = 251
Score = 28.2 bits (64), Expect = 3.5
Identities = 18/66 (27%), Positives = 24/66 (36%), Gaps = 10/66 (15%)
Query: 117 AIARFQRLL--GKKVIFITGTD-EHGEKIAAAAADGGSSPSEHCDVVSQAYKTLWKDL-D 172
AIA + + G KV+ ITG + GEK A + D + W L D
Sbjct: 21 AIAT--KFVEEGAKVM-ITGRHSDVGEKAAKSVGTPDQIQFFQHDSSDEDG---WTKLFD 74
Query: 173 IAYDKF 178
F
Sbjct: 75 ATEKAF 80
>1s4x_A Integrin beta-3; cell adhesion; NMR {Homo sapiens} SCOP: j.60.1.1
PDB: 2ljd_A* 2lje_A* 2ljf_A*
Length = 67
Score = 26.4 bits (58), Expect = 3.6
Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 5/34 (14%)
Query: 23 KEFEEMAARINYSIQNSLWLLNPLHSKATTHFRN 56
+FEE AR + N NPL+ +AT+ F N
Sbjct: 33 AKFEEERARAKWDTAN-----NPLYKEATSTFTN 61
>2kv9_B Integrin beta-3; platelet glycoprotein IIIA, GPIIIA, C adhesion;
NMR {Homo sapiens}
Length = 75
Score = 26.1 bits (57), Expect = 4.5
Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 5/34 (14%)
Query: 23 KEFEEMAARINYSIQNSLWLLNPLHSKATTHFRN 56
+FEE AR + N NPL+ +AT+ F N
Sbjct: 41 AKFEEERARAKWDTAN-----NPLYKEATSTFTN 69
>1m8o_B Platele integrin BETA3 subunit: cytoplasmic domain; ALFA helix,
platelet, membrane protein; NMR {Homo sapiens} SCOP:
j.60.1.1 PDB: 2l1c_B* 2h7d_B* 2h7e_B*
Length = 47
Score = 25.1 bits (55), Expect = 5.0
Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 5/34 (14%)
Query: 23 KEFEEMAARINYSIQNSLWLLNPLHSKATTHFRN 56
+FEE AR + N NPL+ +AT+ F N
Sbjct: 13 AKFEEERARAKWDTAN-----NPLYKEATSTFTN 41
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell
A cleavage on PAIR of basic residues, disease mutation,
disul bond, glycoprotein; NMR {Homo sapiens}
Length = 79
Score = 26.0 bits (57), Expect = 5.2
Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 5/34 (14%)
Query: 23 KEFEEMAARINYSIQNSLWLLNPLHSKATTHFRN 56
+FEE AR + N NPL+ +AT+ F N
Sbjct: 45 AKFEEERARAKWDTAN-----NPLYKEATSTFTN 73
>1sqs_A Conserved hypothetical protein; structural genomics, alpha beta
protein, PSI, protein struct initiative; HET: TLA; 1.50A
{Streptococcus pneumoniae} SCOP: c.23.5.5 PDB: 2oys_A*
Length = 242
Score = 27.3 bits (60), Expect = 6.2
Identities = 19/156 (12%), Positives = 47/156 (30%), Gaps = 20/156 (12%)
Query: 88 ADPFVLTTPLYYVNAPPHMGSAYTTIAADAIARFQRLLGKKVIFITGTDEHGEKIAAAA- 146
+D ++++P+Y N + I + RL GK V+ + + +G +
Sbjct: 80 SDIIIISSPVYLQNVSVDTKNFIERIG--GWSHLFRLAGKFVVTLDVAESNGSDNVSEYL 137
Query: 147 -----------ADGGSSPSEHCDVVSQAYKTLWKDLDIAYDKFIRTTEPKHEAIVKEFYS 195
S + D+ ++ + I+ ++ +
Sbjct: 138 RDIFSYMGGQILHQVSITNSLKDIAEAQLMEATYKIEDVLEGKIKYKTTDYQERAYQTLK 197
Query: 196 SVLANGDIYKADYE-----G-LYCVNCEEYKDEKEL 225
+L N D + + EE+ + +
Sbjct: 198 LILENYDSEHFEKMYWEKKRLFEANSLEEWYYVENI 233
>1fw8_A PGK P72, phosphoglycerate kinase; phosphotransferase, glycoly
mutant, permutation, permuted sequence, protein foldin
domain protein; 2.30A {Saccharomyces cerevisiae} SCOP:
c.86.1.1
Length = 416
Score = 27.5 bits (62), Expect = 6.7
Identities = 11/32 (34%), Positives = 13/32 (40%), Gaps = 1/32 (3%)
Query: 119 ARFQRLLGKKVIFITGT-DEHGEKIAAAAADG 149
Q LLGK V F+ E A+A G
Sbjct: 11 KELQSLLGKDVTFLNDCVGPEVEAAVKASAPG 42
>3cxj_A Uncharacterized protein; PSI-II, structural genomics structure
initiative; 2.80A {Methanothermobacter
thermautotrophicusorganism_taxid}
Length = 165
Score = 26.9 bits (59), Expect = 6.7
Identities = 9/50 (18%), Positives = 19/50 (38%), Gaps = 6/50 (12%)
Query: 271 SFRLNEVQGWIKSGLRDFSISRASVDWGIPVPNDNKQTIYV----WFDAL 316
+ + + +I + R VD+ + P + + V +FD L
Sbjct: 71 ALSMEKRTEFIWKVRFTLN--RFGVDFQLDHPENVLNSYLVTDEIFFDGL 118
>2wzb_A Phosphoglycerate kinase 1; hereditary hemolytic anemia,
transferase, phosphoprotein, KI glycolysis,
nucleotide-binding; HET: ADP 3PG; 1.47A {Homo sapiens}
PDB: 2wzc_A* 2x13_A* 2x15_A* 2xe6_A* 2xe7_A* 2xe8_A*
2ybe_A* 3c3b_A* 2zgv_A* 3c3a_A* 3c39_A* 3c3c_A* 2wzd_A*
2x14_A* 2y3i_A* 1vjd_A* 1vjc_A* 1kf0_A* 1hdi_A* 2p9t_A*
...
Length = 416
Score = 27.5 bits (62), Expect = 7.4
Identities = 11/32 (34%), Positives = 14/32 (43%), Gaps = 1/32 (3%)
Query: 119 ARFQRLLGKKVIFITGT-DEHGEKIAAAAADG 149
+ LLGK V+F+ EK A A G
Sbjct: 82 VELKSLLGKDVLFLKDCVGPEVEKACANPAAG 113
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function;
HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Length = 251
Score = 27.2 bits (60), Expect = 7.5
Identities = 12/52 (23%), Positives = 21/52 (40%), Gaps = 1/52 (1%)
Query: 107 GSAYTTIAADAIARFQRLLGKKVIFITGTDEHGEKIAAAAADGGSSPSEHCD 158
G+ TT AA I + G+ +F+T +E + A G ++
Sbjct: 40 GTGKTTFAAQFIYKGAEEYGEPGVFVTL-EERARDLRREMASFGWDFEKYEK 90
>1wly_A CAAR, 2-haloacrylate reductase; NADPH-dependent oxidoreductase,
oxidoreductase; 1.30A {Burkholderia SP}
Length = 333
Score = 27.2 bits (61), Expect = 8.0
Identities = 11/38 (28%), Positives = 12/38 (31%), Gaps = 10/38 (26%)
Query: 123 RLLGKKVIFITGTDEHGEKIAAAAADGGSSPSEHCDVV 160
R LG VI T+ EK A G C
Sbjct: 167 RHLGATVIGTVSTE---EKAETARKLG-------CHHT 194
>1qpg_A PGK, 3-phosphoglycerate kinase; phosphotransferase (carboxyl
acceptor), acetylation, glycolysis; HET: MAP 3PG; 2.40A
{Saccharomyces cerevisiae} SCOP: c.86.1.1 PDB: 3pgk_A*
Length = 415
Score = 27.1 bits (61), Expect = 9.0
Identities = 11/32 (34%), Positives = 13/32 (40%), Gaps = 1/32 (3%)
Query: 119 ARFQRLLGKKVIFITGT-DEHGEKIAAAAADG 149
Q LLGK V F+ E A+A G
Sbjct: 81 KELQSLLGKDVTFLNDCVGPEVEAAVKASAPG 112
>1vpe_A Phosphoglycerate kinase; transferase, hyperthermostability,
crystal, AMP-PNP, 3-PGA; HET: ANP 3PG; 2.00A {Thermotoga
maritima} SCOP: c.86.1.1
Length = 398
Score = 27.1 bits (61), Expect = 9.3
Identities = 9/32 (28%), Positives = 14/32 (43%), Gaps = 1/32 (3%)
Query: 119 ARFQRLLGKKVIFITGT-DEHGEKIAAAAADG 149
R LLGK+V F+ + +K +G
Sbjct: 77 KRLSELLGKEVKFVPAVVGDEVKKAVEELKEG 108
>3q3v_A Phosphoglycerate kinase; structural genomics, center for structural
genomics of infec diseases, csgid, PGK; HET: PGE; 2.15A
{Campylobacter jejuni subsp}
Length = 403
Score = 27.1 bits (61), Expect = 9.3
Identities = 8/32 (25%), Positives = 12/32 (37%), Gaps = 1/32 (3%)
Query: 119 ARFQRLLGKKVIFITGT-DEHGEKIAAAAADG 149
R RLL K+++ E + A G
Sbjct: 82 KRLARLLDKEIVMAKDVIGEDAKTKAMNLKAG 113
>3oz7_A Phosphoglycerate kinase; transferase, ATP binding, glycolysi
malaria parasite; 2.70A {Plasmodium falciparum} PDB:
1ltk_A* 3oza_A
Length = 417
Score = 27.1 bits (61), Expect = 9.8
Identities = 8/32 (25%), Positives = 15/32 (46%), Gaps = 1/32 (3%)
Query: 119 ARFQRLLGKKVIFITGT-DEHGEKIAAAAADG 149
+ LLG++V+F+ + E AA +
Sbjct: 84 ETLKGLLGEEVLFLNDCVGKEVEDKINAAKEN 115
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.317 0.132 0.399
Gapped
Lambda K H
0.267 0.0718 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,245,598
Number of extensions: 316063
Number of successful extensions: 950
Number of sequences better than 10.0: 1
Number of HSP's gapped: 925
Number of HSP's successfully gapped: 62
Length of query: 345
Length of database: 6,701,793
Length adjustment: 94
Effective length of query: 251
Effective length of database: 4,077,219
Effective search space: 1023381969
Effective search space used: 1023381969
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.1 bits)