RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 046127
(345 letters)
>d1pfva2 c.26.1.1 (A:4-140,A:176-388) Methionyl-tRNA synthetase
(MetRS) {Escherichia coli [TaxId: 562]}
Length = 350
Score = 177 bits (449), Expect = 2e-53
Identities = 65/254 (25%), Positives = 109/254 (42%), Gaps = 10/254 (3%)
Query: 88 ADPFVLTTPLYYVNAPPHMGSAYTTIAADAIARFQRLLGKKVIFITGTDEHGEKIAAAAA 147
A ++T L Y N H+G I AD R+QR+ G +V FI D HG I A
Sbjct: 1 AKKILVTCALPYANGSIHLGHMLEHIQADVWVRYQRMRGHEVNFICADDAHGTPIMLKAQ 60
Query: 148 DGGSSPSEHCDVVSQAYKTLWKDLDIAYDKFIRTTEPKHEAIVKEFYSSVLANGDIYKAD 207
G +P + +SQ ++T + +I+YD + T ++ + + YS + NG I
Sbjct: 61 QLGITPEQMIGEMSQEHQTDFAGFNISYDNYHSTHSEENRQLSELIYSRLKENGFIKNRT 120
Query: 208 YEGLYCVNCEEYKDEKELLENQCCPIHLKPCVARKEDNYFFALSKYQKLLEDTLTENPDF 267
LY + + + V R +++FF L + ++L+
Sbjct: 121 ISQLYDPEKGMFLPD-------RFVVSGATPVMRDSEHFFFDLPSFSEMLQAWTRSGAL- 172
Query: 268 VQPSFRLNEVQGWIKSGLRDFSISRASVDWGIPVPNDNKQTIYVWFDALLGYISALSEDR 327
N++Q W +SGL+ + ISR + +G +PN + YVW DA +GY+ +
Sbjct: 173 --QEQVANKMQEWFESGLQQWDISRDAPYFGFEIPNAPGKYFYVWLDAPIGYMGSFKNLC 230
Query: 328 DQPSLRTAVSSGWP 341
D+ + W
Sbjct: 231 DKRGDSVSFDEYWK 244
>d2d5ba2 c.26.1.1 (A:1-348) Methionyl-tRNA synthetase (MetRS)
{Thermus thermophilus [TaxId: 274]}
Length = 348
Score = 143 bits (360), Expect = 2e-40
Identities = 117/236 (49%), Positives = 149/236 (63%), Gaps = 3/236 (1%)
Query: 90 PFVLTTPLYYVNAPPHMGSAYTTIAADAIARFQRLLGKKVIFITGTDEHGEKIAAAAADG 149
F +TTP+YYVNA PH+G AYTT+ AD +AR+ RL G + F+TGTDEHGE + AA
Sbjct: 4 VFYVTTPIYYVNAEPHLGHAYTTVVADFLARWHRLDGYRTFFLTGTDEHGETVYRAAQAA 63
Query: 150 GSSPSEHCDVVSQAYKTLWKDLDIAYDKFIRTTEPKHEAIVKEFYSSVLANGDIYKADYE 209
G P D VS +K W L IAYD FIRTTE +H+ +V+ V GDIY +YE
Sbjct: 64 GEDPKAFVDRVSGRFKRAWDLLGIAYDDFIRTTEERHKKVVQLVLKKVYEAGDIYYGEYE 123
Query: 210 GLYCVNCEEYKDEKELLENQCCPIHLKPCVARKEDNYFFALSKYQKLLEDTLTENPDFVQ 269
GLYCV+CE + EKE L CPIH +P RKE NYFF + KY+ L++ + ENPD ++
Sbjct: 124 GLYCVSCERFYTEKE-LVEGLCPIHGRPVERRKEGNYFFRMEKYRPWLQEYIQENPDLIR 182
Query: 270 PSFRLNEVQGWIKSGLRDFSIS--RASVDWGIPVPNDNKQTIYVWFDALLGYISAL 323
P NEV + + D SIS ++ V WGIP+P D +VWFDALL Y+SAL
Sbjct: 183 PEGYRNEVLAMLAEPIGDLSISRPKSRVPWGIPLPWDENHVTFVWFDALLNYVSAL 238
>d1h3na3 c.26.1.1 (A:1-225,A:418-686) Leucyl-tRNA synthetase (LeuRS)
{Thermus thermophilus [TaxId: 274]}
Length = 494
Score = 135 bits (339), Expect = 2e-36
Identities = 43/209 (20%), Positives = 84/209 (40%), Gaps = 6/209 (2%)
Query: 86 EPADPFVLTTPLYYVNAPPHMGSAYTTIAADAIARFQRLLGKKVIFITGTDEHGEKIAAA 145
+ Y + HMG D +ARF+R+ G +V+ G D G A
Sbjct: 30 GGRGKQYVLVMFPYPSGDLHMGHLKNYTMGDVLARFRRMQGYEVLHPMGWDAFGLPAENA 89
Query: 146 AADGGSSPSEHCDVVSQAYKTLWKDLDIAYD--KFIRTTEPKHEAIVKEFYSSVLANGDI 203
A G P + + K + + I YD + + T EP++ + + + G
Sbjct: 90 ALKFGVHPKDWTYANIRQAKESLRLMGILYDWDREVTTCEPEYYRWNQWIFLKMWEKGLA 149
Query: 204 YKADYEGLYCVNCEEYKDEKELLENQCCPIHLKPCVARKEDNYFFALSKYQKLLEDTLTE 263
Y+A +C C+ ++++E +C P R+ + ++ ++ Y + L +
Sbjct: 150 YRAKGLVNWCPKCQTVLANEQVVEGRCWRHEDTPVEKRELEQWYLRITAYA----ERLLK 205
Query: 264 NPDFVQPSFRLNEVQGWIKSGLRDFSISR 292
+ + + ++ +Q LRD+ ISR
Sbjct: 206 DLEGLNWPEKVKAMQRAWIGRLRDWLISR 234
>d1rqga2 c.26.1.1 (A:1-138,A:174-396) Methionyl-tRNA synthetase
(MetRS) {Pyrococcus abyssi [TaxId: 29292]}
Length = 361
Score = 130 bits (327), Expect = 2e-35
Identities = 74/245 (30%), Positives = 117/245 (47%), Gaps = 16/245 (6%)
Query: 91 FVLTTPLYYVNAPPHMG-SAYTTIAADAIARFQRLLGKKVIFITGTDEHGEKIAAAAADG 149
+++T+ L Y N P H G A + AD R+ RL G+ V+FI GTDEHG I+ A
Sbjct: 4 YMVTSALPYANGPIHAGHLAGAYLPADIFVRYLRLKGEDVVFICGTDEHGTPISFRALKE 63
Query: 150 GSSPSEHCDVVSQAYKTLWKDLDIAYDKFIRTTEPKHEAIVKEFYSSVLANGDIYKADYE 209
G SP E D + K ++ I++D F RT P H + +EF+ NG + K +
Sbjct: 64 GRSPREIVDEFHEQIKITFQRAKISFDFFGRTELPIHYKLSQEFFLKAYENGHLVKKVTK 123
Query: 210 GLYCVNCEEYKDEKELLENQCCPIHLKPCVARKEDNYFFALSKYQKLLEDTLTENPDFVQ 269
YC + + + I +P R +Y+ + + + L+ + + P
Sbjct: 124 QAYCEHDKMFLP-------DRFAICGRPISFRDSAHYYIKMQDFAERLKRWIEKQPWKPN 176
Query: 270 PSFRLNEVQGWIKSGLRDFSISRASVDWGIPVP----NDNKQTIYVWFDALLGYISALSE 325
V WI+ GL + +I+R ++WGIPVP + + +YVWF+A +GYIS E
Sbjct: 177 VKNM---VLSWIEEGLEERAITR-DLNWGIPVPLDEEDMKGKVLYVWFEAPIGYISITIE 232
Query: 326 DRDQP 330
+
Sbjct: 233 HFKRI 237
>d1ilea3 c.26.1.1 (A:1-197,A:387-641) Isoleucyl-tRNA synthetase
(IleRS) {Thermus thermophilus [TaxId: 274]}
Length = 452
Score = 117 bits (293), Expect = 4e-30
Identities = 41/252 (16%), Positives = 73/252 (28%), Gaps = 25/252 (9%)
Query: 76 YATNTDKSGTEPADPFVLTTPLYYVNAPPHMGSAYTTIAADAIARFQRLLGKKVIFITGT 135
+ + + P + + N PH+G A D R++ + G G
Sbjct: 27 FQKSVENRKGGP--RYTVYEGPPTANGLPHVGHAQARSYKDLFPRYKTMRGYYAPRRAGW 84
Query: 136 DEHGEKIAAAAADGGSSPS-------------EHCDVVSQAYKTLWKDLDIAY------D 176
D HG + S + C Y+ W+ +
Sbjct: 85 DTHGLPVELEVEKKLGLKSKREIEAYGIERFNQACRESVFTYEKEWEAFTERIAYWVDLE 144
Query: 177 KFIRTTEPKHEAIVKEFYSSVLANGDIYKADYEGLYCVNCEEYKDEKELLENQ-CCPIHL 235
T EP + + ++ G +Y+ YC C E+ C
Sbjct: 145 DAYATLEPTYIESIWWSLKNLFDRGLLYRDHKVVPYCPRCGTPLSSHEVALGYPHCWRCS 204
Query: 236 KPCVARKEDNYFFALSKYQKLLEDTLTENPDFVQPSFRLNEVQGWIKSGLRDFSISRASV 295
P + +++F + ++ E P G L D+++SR
Sbjct: 205 TPLMYYATESWFIKNTLFKD--ELIRNNQEIHWVPPHIKEGRYGEWLKNLVDWALSRNR- 261
Query: 296 DWGIPVPNDNKQ 307
WG P+P Q
Sbjct: 262 YWGTPLPIWVCQ 273
>d1ivsa4 c.26.1.1 (A:1-189,A:343-578) Valyl-tRNA synthetase (ValRS)
{Thermus thermophilus [TaxId: 274]}
Length = 425
Score = 113 bits (284), Expect = 4e-29
Identities = 44/246 (17%), Positives = 79/246 (32%), Gaps = 23/246 (9%)
Query: 86 EPADPFVLTTPLYYVNAPPHMGSAYTTIAADAIARFQRLLGKKVIFITGTDEHGEKIAAA 145
PFV+ P V HMG A DA+ R++R+ G + +++ GTD G
Sbjct: 31 SGKPPFVIFMPPPNVTGSLHMGHALDNSLQDALIRYKRMRGFEAVWLPGTDHAGIATQVV 90
Query: 146 AADGGSSPSEHCDVVSQAY----------------KTLWKDLDIAYD--KFIRTTEPKHE 187
+ + + K L + D + T + K
Sbjct: 91 VERLLLKEGKTRHDLGREKFLERVWQWKEESGGTILKQLKRLGASADWSREAFTMDEKRS 150
Query: 188 AIVKEFYSSVLANGDIYKADYEGLYCVNCEEYKDEKELLENQCCPIHLKPCVARKEDNYF 247
V+ +S G Y+A +C CE + E + C P ++
Sbjct: 151 RAVRYAFSRYYHEGLAYRAPRLVNWCPRCETTLSDL---EVETCSRCGTPIEYAIFPQWW 207
Query: 248 FALSKYQKLLEDTLTENPDFVQPSFRLNEVQGWIKSGLRDFSISRASVDWGIPVPNDNKQ 307
+ + + L P W+++ ++D++ISR WG +P +
Sbjct: 208 LRMRPLAEEVLKGLRRGDIAFVPERWKKVNMDWLEN-VKDWNISRQL-WWGHQIPAWYCE 265
Query: 308 TIYVWF 313
Sbjct: 266 DCQAVN 271
>d1ffya3 c.26.1.1 (A:1-200,A:395-644) Isoleucyl-tRNA synthetase
(IleRS) {Staphylococcus aureus [TaxId: 1280]}
Length = 450
Score = 109 bits (273), Expect = 2e-27
Identities = 50/258 (19%), Positives = 87/258 (33%), Gaps = 21/258 (8%)
Query: 85 TEPADPFVLTTPLYYVNAPPHMGSAYTTIAADAIARFQRLLGKKVIFITGTDEHGEKIAA 144
+ + F+L Y N HMG A I D I R++ + G ++ G D HG I
Sbjct: 44 NKGNETFILHDGPPYANGNLHMGHALNKILKDFIVRYKTMQGFYAPYVPGWDTHGLPIEQ 103
Query: 145 AAADGGSSPSEHCDVVSQAYKTLWKDLDIAYDK--------------FIRTTEPKHEAIV 190
A G + + + I K T +P++EA
Sbjct: 104 ALTKKGVDRKKMSTAEFREKCKEFALEQIELQKKDFRRLGVRGDFNDPYITLKPEYEAAQ 163
Query: 191 KEFYSSVLANGDIYKADYEGLYCVNCEEYKDEKELLENQCCPIHLKPCVARKEDNYFFAL 250
+ + G IYK + + E + +E KP + R +F ++
Sbjct: 164 IRIFGEMADKGLIYKGKKPVYWSPSSESSLA-EAEIEYPHDWRTKKPVIFRATPQWFASI 222
Query: 251 SKYQKLLEDTLTENPDFVQPSFRLNEVQGWIKSGLRDFSISRASVDWGIPVPNDNKQT-- 308
SK ++ + D + V ++ ISR V WG+P+P +
Sbjct: 223 SKVRQDILDAIENTNFKVNWGKTRIYNMVR---DRGEWVISRQRV-WGVPLPVFYAENGE 278
Query: 309 IYVWFDALLGYISALSED 326
I + + + +E
Sbjct: 279 IIMTKETVNHVADLFAEH 296
>d1li5a2 c.26.1.1 (A:1-315) Cysteinyl-tRNA synthetase (CysRS)
{Escherichia coli [TaxId: 562]}
Length = 315
Score = 75.8 bits (185), Expect = 4e-16
Identities = 38/232 (16%), Positives = 63/232 (27%), Gaps = 35/232 (15%)
Query: 100 VNAPPHMGSAYTTIAADAIARFQRLLGKKVIFITGTDEHGEKIAAAAADGGSSPSEHCDV 159
V H+G T +A D +AR+ R LG K+ ++ + +KI A + G S D
Sbjct: 32 VYDLCHIGHGRTFVAFDVVARYLRFLGYKLKYVRNITDIDDKIIKRANENGESFVAMVDR 91
Query: 160 VSQAYKTLWKDLDIAYDKFIRTTEPKHEAIVKEFYSSVLANGDIYKADYEGLYC--VNCE 217
+ + L+I I++ ++A G Y AD +
Sbjct: 92 MIAEMHKDFDALNILRPDMEPRATHHIAEIIE-LTEQLIAKGHAYVADNGDVMFDVPTDP 150
Query: 218 EYKDEKELLENQCCPIHLKPCVARKEDNYFFALSKYQKLLEDTLTENPDFVQPSFRLNEV 277
Y +Q V K + F L K
Sbjct: 151 TYGVLSRQDLDQLQAGARVDVVDDKRNPMDFVLWK------------------------- 185
Query: 278 QGWIKSGLRDFSISRASVDWGIPVPNDNKQTIYVWFDALLGYISALSEDRDQ 329
+ WG P + + + L + D
Sbjct: 186 -------MSKEGEPSWPSPWGAGRPGWHIECSAMNCKQLGNHFDIHGGGSDL 230
>d1irxa2 c.26.1.1 (A:3-319) Class I lysyl-tRNA synthetase {Archaeon
Pyrococcus horikoshii [TaxId: 53953]}
Length = 317
Score = 68.6 bits (166), Expect = 1e-13
Identities = 13/168 (7%), Positives = 32/168 (19%), Gaps = 8/168 (4%)
Query: 87 PADPFVLTTPLYYVNAPPHMGSAYTTIAADAIARFQRLLGKKVIFITGTDEHGEKIAAAA 146
+ + H+G+ A + R G +V I D++
Sbjct: 15 GEKEKYVVESGITPSGYVHVGNFRELFTAYIVGHALRDKGYEVRHIHMWDDYDRFRKVPR 74
Query: 147 ADGGSSPSEHCDVVSQAYKTLWKDLDIAYDKFIRTTEPKHEAIVKEFYSSVLANGDIYKA 206
+S+ A + E + ++ +
Sbjct: 75 NVPQEWKDYLGMPISEVPDPWGCHESYAEHFMRKFEEEVEKLGIEVDLLYASELYKRGEY 134
Query: 207 DYEGLYCV--------NCEEYKDEKELLENQCCPIHLKPCVARKEDNY 246
E +Y++ +
Sbjct: 135 SEEIRLAFEKRDKIMEILNKYREIAKQPPLPENWWPAMVYCPEHRREA 182
>d1vnda_ a.4.1.1 (A:) VND/NK-2 protein {Fruit fly (Drosophila
melanogaster) [TaxId: 7227]}
Length = 77
Score = 28.1 bits (62), Expect = 0.41
Identities = 11/58 (18%), Positives = 25/58 (43%), Gaps = 1/58 (1%)
Query: 6 KKATPVKHSEEQTLSLQKEFEEMAARINYSIQNSLWLLNPLHSKATTHFRN-RLKFRQ 62
K+ V ++ QT L++ F + ++ L+ ++ F+N R K ++
Sbjct: 9 KRKRRVLFTKAQTYELERRFRQQRYLSAPEREHLASLIRLTPTQVKIWFQNHRYKTKR 66
>d1wesa_ g.50.1.2 (A:) PHD Inhibitor of growth protein 2, Ing2
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 71
Score = 27.2 bits (60), Expect = 0.62
Identities = 11/54 (20%), Positives = 21/54 (38%), Gaps = 5/54 (9%)
Query: 199 ANGDIYKADYEGLYCVNCEEYKDEKELLENQCCPIHL--KPCVARKE---DNYF 247
++G+ E YC+ + E +N+ CPI CV+ ++
Sbjct: 5 SSGEFAIDPNEPTYCLCNQVSYGEMIGCDNEQCPIEWFHFSCVSLTYKPKGKWY 58
>d1j09a2 c.26.1.1 (A:1-305) Glutamyl-tRNA synthetase (GluRS)
{Thermus thermophilus [TaxId: 274]}
Length = 305
Score = 29.0 bits (64), Expect = 0.88
Identities = 25/144 (17%), Positives = 42/144 (29%), Gaps = 17/144 (11%)
Query: 101 NAPPHMGSAYTTIAADAIARFQRLLGKKVIFITGTDEHGEKIAAAAADGGSSPSEHCDVV 160
PH+G+AY + A AR G+ ++ I TD A +
Sbjct: 11 TGDPHVGTAYIALFNYAWARRNG--GRFIVRIEDTDRARYVPGAEER------------I 56
Query: 161 SQAYKTLWKDLDIAYDKFIRTTEPK---HEAIVKEFYSSVLANGDIYKADYEGLYCVNCE 217
A K L D D + + +++ +L G Y+A
Sbjct: 57 LAALKWLGLSYDEGPDVGGPHGPYRQSERLPLYQKYAEELLKRGWAYRAFETPEELEQIR 116
Query: 218 EYKDEKELLENQCCPIHLKPCVAR 241
+ K + P + R
Sbjct: 117 KEKGGYDGRARNIPPEEAEERARR 140
>d2fcja1 c.136.1.1 (A:1-114) Hypothetical protein RBSTP2199
{Bacillus stearothermophilus [TaxId: 1422]}
Length = 114
Score = 27.5 bits (61), Expect = 0.99
Identities = 12/56 (21%), Positives = 19/56 (33%), Gaps = 3/56 (5%)
Query: 111 TTIAADAIARFQRLLG-KKVIFITGTDEHGEKIAAAAADGGSSPSEHCDVVSQAYK 165
TI+ + L V + DE GEK+ P + +AY+
Sbjct: 34 GTISDARLEELADELEGYDVYLLADADEAGEKLRRQFRR--MFPEAEHLYIDRAYR 87
>d1iq0a2 c.26.1.1 (A:97-466) Arginyl-tRNA synthetase (ArgRS)
{Thermus thermophilus [TaxId: 274]}
Length = 370
Score = 28.4 bits (62), Expect = 1.4
Identities = 10/31 (32%), Positives = 14/31 (45%)
Query: 100 VNAPPHMGSAYTTIAADAIARFQRLLGKKVI 130
N H+G DAIAR G++V+
Sbjct: 18 PNKELHVGHLRNIALGDAIARILAYAGREVL 48
>d1f7ua2 c.26.1.1 (A:136-483) Arginyl-tRNA synthetase (ArgRS)
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 348
Score = 28.3 bits (62), Expect = 1.4
Identities = 10/31 (32%), Positives = 14/31 (45%)
Query: 100 VNAPPHMGSAYTTIAADAIARFQRLLGKKVI 130
+ P H G +TI +A LG +VI
Sbjct: 19 IAKPFHAGHLRSTIIGGFLANLYEKLGWEVI 49
>d1ig7a_ a.4.1.1 (A:) Msx-1 homeodomain {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 58
Score = 25.6 bits (56), Expect = 1.9
Identities = 8/44 (18%), Positives = 18/44 (40%)
Query: 14 SEEQTLSLQKEFEEMAARINYSIQNSLWLLNPLHSKATTHFRNR 57
+ Q L+L+++F + L+ ++ F+NR
Sbjct: 8 TTAQLLALERKFRQKQYLSIAERAEFSSSLSLTETQVKIWFQNR 51
>d2ecca1 a.4.1.1 (A:1-76) Homeobox-leucine zipper protein Homez
{Human (Homo sapiens) [TaxId: 9606]}
Length = 76
Score = 25.9 bits (56), Expect = 2.0
Identities = 7/59 (11%), Positives = 17/59 (28%), Gaps = 1/59 (1%)
Query: 12 KHSEEQTLSLQKEFEEMAARINYSIQNSLWLLNPLHSKATTHFRN-RLKFRQNLFSLSK 69
+ ++EQ L+ F + Q + + F + R + +
Sbjct: 9 RKTKEQLAILKSFFLQCQWARREDYQKLEQITGLPRPEIIQWFGDTRYALKHGQLKWFR 67
>d2f9yb1 c.14.1.4 (B:23-285) Acetyl-coenzyme A carboxylase carboxyl
transferase subunit beta, AccD {Escherichia coli [TaxId:
562]}
Length = 263
Score = 27.4 bits (60), Expect = 2.5
Identities = 16/95 (16%), Positives = 33/95 (34%), Gaps = 7/95 (7%)
Query: 213 CVNCEEYKDEKELLENQ-CCPI---HLKPCVARKEDNYFFALSKYQKLLEDTLTENPDFV 268
C +C + EL N CP H++ AR + +L + ++
Sbjct: 5 CDSCGQVLYRAELERNLEVCPKCDHHMR-MTARNRLHSLLDEGSLVELGSELEPKDVLKF 63
Query: 269 --QPSFRLNEVQGWIKSGLRDFSISRASVDWGIPV 301
++ ++G +D + +G+PV
Sbjct: 64 RDSKKYKDRLASAQKETGEKDALVVMKGTLYGMPV 98
>d1fjla_ a.4.1.1 (A:) Paired protein {Fruit fly (Drosophila
melanogaster) [TaxId: 7227]}
Length = 65
Score = 25.3 bits (55), Expect = 3.0
Identities = 13/56 (23%), Positives = 23/56 (41%), Gaps = 1/56 (1%)
Query: 14 SEEQTLSLQKEFEEMAARINYSIQNSLWLLNPLHSKATTHFRN-RLKFRQNLFSLS 68
S Q L++ FE Y+ + N ++ F+N R + R+ S+S
Sbjct: 10 SASQLDELERAFERTQYPDIYTREELAQRTNLTEARIQVWFQNRRARLRKQHTSVS 65
>d1a99a_ c.94.1.1 (A:) Putrescine receptor (PotF) {Escherichia coli
[TaxId: 562]}
Length = 341
Score = 27.1 bits (58), Expect = 3.8
Identities = 16/93 (17%), Positives = 33/93 (35%), Gaps = 6/93 (6%)
Query: 113 IAADAIARFQRLLGKKVIFITGTDEHGEKIAAAAADGGSSPSEHCDVVSQAYKTLWKDLD 172
IA D +A F++ G KV++ E + G + D+V + L + L
Sbjct: 13 IAPDTVANFEKETGIKVVYDVFDS--NEVLEGKLMAGSTGF----DLVVPSASFLERQLT 66
Query: 173 IAYDKFIRTTEPKHEAIVKEFYSSVLANGDIYK 205
+ + ++ + ++A D
Sbjct: 67 AGVFQPLDKSKLPEWKNLDPELLKLVAKHDPDN 99
>d1zq3p1 a.4.1.1 (P:2-68) Homeotic bicoid protein {Fruit fly
(Drosophila melanogaster) [TaxId: 7227]}
Length = 67
Score = 24.9 bits (54), Expect = 3.8
Identities = 7/44 (15%), Positives = 16/44 (36%)
Query: 14 SEEQTLSLQKEFEEMAARINYSIQNSLWLLNPLHSKATTHFRNR 57
+ Q L++ F + + + L ++ F+NR
Sbjct: 9 TSSQIAELEQHFLQGRYLTAPRLADLSAKLALGTAQVKIWFKNR 52
>d1ftta_ a.4.1.1 (A:) Thyroid transcription factor 1 homeodomain
{Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 68
Score = 24.5 bits (53), Expect = 5.6
Identities = 9/59 (15%), Positives = 26/59 (44%), Gaps = 1/59 (1%)
Query: 6 KKATPVKHSEEQTLSLQKEFEEMAARINYSIQNSLWLLNPLHSKATTHFRN-RLKFRQN 63
++ V S+ Q L++ F++ ++ +++ ++ F+N R K ++
Sbjct: 2 RRKRRVLFSQAQVYELERRFKQQKYLSAPEREHLASMIHLTPTQVKIWFQNHRYKMKRQ 60
>d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol
dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId:
35933]}
Length = 268
Score = 26.2 bits (57), Expect = 6.0
Identities = 12/47 (25%), Positives = 17/47 (36%)
Query: 117 AIARFQRLLGKKVIFITGTDEHGEKIAAAAADGGSSPSEHCDVVSQA 163
A+ G KV+ D+HG+K+ HCDV
Sbjct: 21 TTAKLFVRYGAKVVIADIADDHGQKVCNNIGSPDVISFVHCDVTKDE 67
>d1vjoa_ c.67.1.3 (A:) Alanine-glyoxylate aminotransferase
{Cyanobacteria (Nostoc sp. pcc 7120) [TaxId: 103690]}
Length = 377
Score = 26.2 bits (56), Expect = 6.3
Identities = 12/123 (9%), Positives = 31/123 (25%), Gaps = 5/123 (4%)
Query: 105 HMGSAYTTIAADAIARFQRLLG---KKVIFITGTDEHGEKIAAAAADGGSSPSEHCDVVS 161
H+ A+ + + + + + I ++GT + A A+ V+
Sbjct: 44 HLDPAFLALMDEIQSLLRYVWQTENPLTIAVSGTGTAA--MEATIANAVEPGDVVLIGVA 101
Query: 162 QAYKTLWKDLDIAYDKFIRTTEPKHEAIVKEFYSSVLANGDIYKADYEGLYCVNCEEYKD 221
+ D+ Y +RT + + +
Sbjct: 102 GYFGNRLVDMAGRYGADVRTISKPWGEVFSLEELRTALETHRPAILALVHAETSTGARQP 161
Query: 222 EKE 224
+
Sbjct: 162 LEG 164
>d1ud0a_ a.8.4.1 (A:) DnaK {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 84
Score = 24.3 bits (53), Expect = 8.2
Identities = 8/20 (40%), Positives = 13/20 (65%)
Query: 217 EEYKDEKELLENQCCPIHLK 236
EE++ +++ LE C PI K
Sbjct: 54 EEFEHQQKELEKVCNPIITK 73
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.317 0.132 0.399
Gapped
Lambda K H
0.267 0.0559 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,282,667
Number of extensions: 60454
Number of successful extensions: 256
Number of sequences better than 10.0: 1
Number of HSP's gapped: 249
Number of HSP's successfully gapped: 28
Length of query: 345
Length of database: 2,407,596
Length adjustment: 86
Effective length of query: 259
Effective length of database: 1,226,816
Effective search space: 317745344
Effective search space used: 317745344
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (24.6 bits)