BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 046132
(361 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2EA5|A Chain A, Solution Structure Of The Ring Domain Of The Human Cell
Growth Regulator With Ring Finger Domain 1 Protein
Length = 68
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 34/58 (58%), Gaps = 6/58 (10%)
Query: 304 KECVICLSEPRDTTVLPCRHMCMCSGCAKVLRFQTNRCPICRQPVERLLEIKVNGPEE 361
K+CV+C + + +LPCRH C+C GC K + +CP+CRQ V+ ++GP
Sbjct: 16 KDCVVCQNGTVNWVLLPCRHTCLCDGCVKYFQ----QCPMCRQFVQE--SFALSGPSS 67
>pdb|2VJE|A Chain A, Crystal Structure Of The Mdm2-Mdmx Ring Domain Heterodimer
pdb|2VJE|C Chain C, Crystal Structure Of The Mdm2-Mdmx Ring Domain Heterodimer
pdb|2VJF|A Chain A, Crystal Structure Of The Mdm2-Mdmx Ring Domain Heterodimer
pdb|2VJF|C Chain C, Crystal Structure Of The Mdm2-Mdmx Ring Domain Heterodimer
Length = 64
Score = 43.1 bits (100), Expect = 3e-04, Method: Composition-based stats.
Identities = 17/49 (34%), Positives = 30/49 (61%), Gaps = 2/49 (4%)
Query: 306 CVICLSEPRDTTVLPCR--HMCMCSGCAKVLRFQTNRCPICRQPVERLL 352
CVIC P++ ++ + H+ C CAK L+ + CP+CRQP++ ++
Sbjct: 11 CVICQGRPKNGCIVHGKTGHLMACFTCAKKLKKRNKPCPVCRQPIQMIV 59
>pdb|2HDP|A Chain A, Solution Structure Of Hdm2 Ring Finger Domain
pdb|2HDP|B Chain B, Solution Structure Of Hdm2 Ring Finger Domain
Length = 63
Score = 43.1 bits (100), Expect = 3e-04, Method: Composition-based stats.
Identities = 17/49 (34%), Positives = 30/49 (61%), Gaps = 2/49 (4%)
Query: 306 CVICLSEPRDTTVLPCR--HMCMCSGCAKVLRFQTNRCPICRQPVERLL 352
CVIC P++ ++ + H+ C CAK L+ + CP+CRQP++ ++
Sbjct: 10 CVICQGRPKNGCIVHGKTGHLMACFTCAKKLKKRNKPCPVCRQPIQMIV 58
>pdb|3EB5|A Chain A, Structure Of The Ciap2 Ring Domain
pdb|3EB6|A Chain A, Structure Of The Ciap2 Ring Domain Bound To Ubch5b
Length = 74
Score = 40.8 bits (94), Expect = 0.001, Method: Composition-based stats.
Identities = 15/46 (32%), Positives = 25/46 (54%), Gaps = 4/46 (8%)
Query: 304 KECVICLSEPRDTTVLPCRHMCMCSGCAKVLRFQTNRCPICRQPVE 349
+ C +C+ + +PC H+ +C CA LR +CPICR ++
Sbjct: 25 RTCKVCMDKEVSIVFIPCGHLVVCKDCAPSLR----KCPICRSTIK 66
>pdb|2VJE|B Chain B, Crystal Structure Of The Mdm2-Mdmx Ring Domain Heterodimer
pdb|2VJE|D Chain D, Crystal Structure Of The Mdm2-Mdmx Ring Domain Heterodimer
pdb|2VJF|B Chain B, Crystal Structure Of The Mdm2-Mdmx Ring Domain Heterodimer
pdb|2VJF|D Chain D, Crystal Structure Of The Mdm2-Mdmx Ring Domain Heterodimer
Length = 63
Score = 40.4 bits (93), Expect = 0.002, Method: Composition-based stats.
Identities = 17/59 (28%), Positives = 32/59 (54%), Gaps = 2/59 (3%)
Query: 298 DANDPGKECVICLSEPRDTTVLPCR--HMCMCSGCAKVLRFQTNRCPICRQPVERLLEI 354
D + K C +C PRD ++ R H+ C CA+ L+ CPIC++ ++ ++++
Sbjct: 2 DCQNLLKPCSLCEKRPRDGNIIHGRTGHLVTCFHCARRLKKAGASCPICKKEIQLVIKV 60
>pdb|3T6P|A Chain A, Iap Antagonist-Induced Conformational Change In Ciap1
Promotes E3 Ligase Activation Via Dimerization
Length = 345
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 39/89 (43%), Gaps = 5/89 (5%)
Query: 257 VFEKEKGEYQVRVVKQILWVNGMRYELQEIYGIGNSVDGDVDANDPGKECVICLSEPRDT 316
+F+ E + K + M+Y E G S++ + + C +C+ +
Sbjct: 250 IFKNSLKEIDSTLYKNLFVDKNMKYIPTEDVS-GLSLEEQLRRLQEERTCKVCMDKEVSV 308
Query: 317 TVLPCRHMCMCSGCAKVLRFQTNRCPICR 345
+PC H+ +C CA LR +CPICR
Sbjct: 309 VFIPCGHLVVCQECAPSLR----KCPICR 333
>pdb|2D8T|A Chain A, Solution Structure Of The Ring Domain Of The Human Ring
Finger Protein 146
Length = 71
Score = 37.7 bits (86), Expect = 0.009, Method: Composition-based stats.
Identities = 17/44 (38%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Query: 305 ECVICLSEPRDTTVLPCRHMCMCSGCAKVLRFQTNRCPICRQPV 348
EC ICL LPC+H+ C C K + RC +CRQ +
Sbjct: 17 ECAICLQTCVHPVSLPCKHV-FCYLCVKGASWLGKRCALCRQEI 59
>pdb|1CHC|A Chain A, Structure Of The C3hc4 Domain By 1h-Nuclear Magnetic
Resonance Spectroscopy; A New Structural Class Of Zinc-
Finger
Length = 68
Score = 37.0 bits (84), Expect = 0.016, Method: Composition-based stats.
Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
Query: 303 GKECVICLSEPRD-TTVLPCRHMCMCSGCAKVLRFQTNRCPICRQPVERLL 352
+ C ICL +P + + LPC H C C Q CP+C+ PVE ++
Sbjct: 5 AERCPICLEDPSNYSMALPCLH-AFCYVCITRWIRQNPTCPLCKVPVESVV 54
>pdb|4AUQ|B Chain B, Structure Of Birc7-Ubch5b-Ub Complex.
pdb|4AUQ|E Chain E, Structure Of Birc7-Ubch5b-Ub Complex
Length = 62
Score = 37.0 bits (84), Expect = 0.018, Method: Composition-based stats.
Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 5/45 (11%)
Query: 304 KECVICLSEPRDTTVLPCRHMCMCSGCAKVLRFQTNRCPICRQPV 348
+ C +CL +PC H+ +C+ CA L+ CPICR PV
Sbjct: 14 RTCKVCLDRAVSIVFVPCGHL-VCAECAPGLQL----CPICRAPV 53
>pdb|1BOR|A Chain A, Transcription Factor Pml, A Proto-Oncoprotein, Nmr, 1
Representative Structure At Ph 7.5, 30 C, In The
Presence Of Zinc
Length = 56
Score = 34.3 bits (77), Expect = 0.12, Method: Composition-based stats.
Identities = 17/42 (40%), Positives = 23/42 (54%), Gaps = 4/42 (9%)
Query: 306 CVICLSEPRDTTVLPCRHMCMCSGCAKVLRFQTNRCPICRQP 347
C C +E + +LPC H +CSGC + Q CPIC+ P
Sbjct: 9 CQQCQAEAKCPKLLPCLHT-LCSGCLEASGMQ---CPICQAP 46
>pdb|3LRQ|A Chain A, Crystal Structure Of The U-Box Domain Of Human Ubiquitin-
Protein Ligase (E3), Northeast Structural Genomics
Consortium Target Hr4604d.
pdb|3LRQ|B Chain B, Crystal Structure Of The U-Box Domain Of Human Ubiquitin-
Protein Ligase (E3), Northeast Structural Genomics
Consortium Target Hr4604d.
pdb|3LRQ|C Chain C, Crystal Structure Of The U-Box Domain Of Human Ubiquitin-
Protein Ligase (E3), Northeast Structural Genomics
Consortium Target Hr4604d.
pdb|3LRQ|D Chain D, Crystal Structure Of The U-Box Domain Of Human Ubiquitin-
Protein Ligase (E3), Northeast Structural Genomics
Consortium Target Hr4604d
Length = 100
Score = 33.9 bits (76), Expect = 0.15, Method: Composition-based stats.
Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Query: 306 CVICLSEPRDTTVLP-CRHMCMCSGCAKVLRFQTNRCPICRQPVE 349
C IC + RD + P C +C S + L Q +CP CR P++
Sbjct: 25 CFICXEKLRDARLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQ 69
>pdb|2YHN|A Chain A, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHN|B Chain B, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHO|A Chain A, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHO|C Chain C, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHO|E Chain E, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHO|G Chain G, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
Length = 79
Score = 33.5 bits (75), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 4/46 (8%)
Query: 306 CVICLSEPRDTTVLPCRHMCMCSGCAKVLRFQTNRCPICRQPVERL 351
C++C E ++T PC H C CA Q CP+CR VE +
Sbjct: 21 CMVCCEEEINSTFCPCGHTVCCESCAA----QLQSCPVCRSRVEHV 62
>pdb|4IC3|A Chain A, Crystal Structure Of The F495l Mutant Xiap Ring Domain
pdb|4IC3|B Chain B, Crystal Structure Of The F495l Mutant Xiap Ring Domain
Length = 74
Score = 33.5 bits (75), Expect = 0.19, Method: Composition-based stats.
Identities = 13/41 (31%), Positives = 21/41 (51%), Gaps = 4/41 (9%)
Query: 304 KECVICLSEPRDTTVLPCRHMCMCSGCAKVLRFQTNRCPIC 344
K C IC+ +PC H+ C CA+ + ++CP+C
Sbjct: 25 KLCKICMDRNIAIVFVPCGHLVTCKQCAEAV----DKCPMC 61
>pdb|4IC2|A Chain A, Crystal Structure Of The Xiap Ring Domain
pdb|4IC2|B Chain B, Crystal Structure Of The Xiap Ring Domain
Length = 74
Score = 33.5 bits (75), Expect = 0.19, Method: Composition-based stats.
Identities = 13/41 (31%), Positives = 21/41 (51%), Gaps = 4/41 (9%)
Query: 304 KECVICLSEPRDTTVLPCRHMCMCSGCAKVLRFQTNRCPIC 344
K C IC+ +PC H+ C CA+ + ++CP+C
Sbjct: 25 KLCKICMDRNIAIVFVPCGHLVTCKQCAEAV----DKCPMC 61
>pdb|2ECG|A Chain A, Solution Structure Of The Ring Domain Of The Baculoviral
Iap Repeat-Containing Protein 4 From Homo Sapiens
Length = 75
Score = 33.5 bits (75), Expect = 0.19, Method: Composition-based stats.
Identities = 13/41 (31%), Positives = 21/41 (51%), Gaps = 4/41 (9%)
Query: 304 KECVICLSEPRDTTVLPCRHMCMCSGCAKVLRFQTNRCPIC 344
K C IC+ +PC H+ C CA+ + ++CP+C
Sbjct: 26 KLCKICMDRNIAIVFVPCGHLVTCKQCAEAV----DKCPMC 62
>pdb|2KIZ|A Chain A, Solution Structure Of Arkadia Ring-H2 Finger Domain
Length = 69
Score = 33.5 bits (75), Expect = 0.20, Method: Composition-based stats.
Identities = 19/51 (37%), Positives = 23/51 (45%), Gaps = 4/51 (7%)
Query: 305 ECVICLS---EPRDTTVLPCRHMCMCSGCAKVLRFQTNRCPICRQPVERLL 352
+C ICLS E D LPC H+ C +CPICR +E L
Sbjct: 16 KCTICLSILEEGEDVRRLPCMHL-FHQVCVDQWLITNKKCPICRVDIEAQL 65
>pdb|2LDR|A Chain A, Solution Structure Of Helix-Ring Domain Of Cbl-B In The
Tyr363 Phosphorylated Form
Length = 82
Score = 32.3 bits (72), Expect = 0.45, Method: Composition-based stats.
Identities = 14/41 (34%), Positives = 20/41 (48%), Gaps = 2/41 (4%)
Query: 306 CVICLSEPRDTTVLPCRHMCMCSGCAKVLRFQTNR-CPICR 345
C IC +D + PC H+ MC+ C + + CP CR
Sbjct: 29 CKICAENDKDVKIEPCGHL-MCTSCLTAWQESDGQGCPFCR 68
>pdb|4AYC|B Chain B, Rnf8 Ring Domain Structure
Length = 138
Score = 32.3 bits (72), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 29/115 (25%), Positives = 46/115 (40%), Gaps = 23/115 (20%)
Query: 234 PVNQNGSDGNSIPGPANSQITQAVFEKEKGEYQVRVVKQILWVNGMRYELQEIYGIGNSV 293
+N++ D +I N ++ Q EKEK M+ + +E+ N
Sbjct: 6 ELNRSKKDFEAIIQAKNKELEQTKEEKEK----------------MQAQKEEVLSHMN-- 47
Query: 294 DGDVDANDPGKECVICLSEPRDTTVLPCRHMCMCSGCAKVLRFQTNRCPICRQPV 348
DV N+ +C+IC + L C H CS C + CPICR+ +
Sbjct: 48 --DVLENEL--QCIICSEYFIEAVTLNCAHS-FCSYCINEWMKRKIECPICRKDI 97
>pdb|4EPO|C Chain C, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|G Chain G, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|H Chain H, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|K Chain K, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|L Chain L, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
Length = 149
Score = 32.0 bits (71), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 30/119 (25%), Positives = 47/119 (39%), Gaps = 23/119 (19%)
Query: 230 ADASPVNQNGSDGNSIPGPANSQITQAVFEKEKGEYQVRVVKQILWVNGMRYELQEIYGI 289
A +N++ D +I N ++ Q EKEK M+ + +E+
Sbjct: 13 ALMEELNRSKKDFEAIIQAKNKELEQTKEEKEK----------------MQAQKEEVLSH 56
Query: 290 GNSVDGDVDANDPGKECVICLSEPRDTTVLPCRHMCMCSGCAKVLRFQTNRCPICRQPV 348
N DV N+ +C+IC + L C H CS C + CPICR+ +
Sbjct: 57 MN----DVLENEL--QCIICSEYFIEAVTLNCAHS-FCSYCINEWMKRKIECPICRKDI 108
>pdb|3VGO|A Chain A, Crystal Structure Of The N-Terminal Fragment Of Cbl-B
pdb|3VGO|B Chain B, Crystal Structure Of The N-Terminal Fragment Of Cbl-B
pdb|3VGO|C Chain C, Crystal Structure Of The N-Terminal Fragment Of Cbl-B
Length = 394
Score = 32.0 bits (71), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 20/41 (48%), Gaps = 2/41 (4%)
Query: 306 CVICLSEPRDTTVLPCRHMCMCSGCAKVLRFQTNR-CPICR 345
C IC +D + PC H+ MC+ C + + CP CR
Sbjct: 341 CKICAENDKDVKIEPCGHL-MCTSCLTAWQESDGQGCPFCR 380
>pdb|4AYC|A Chain A, Rnf8 Ring Domain Structure
Length = 138
Score = 31.6 bits (70), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 29/115 (25%), Positives = 46/115 (40%), Gaps = 23/115 (20%)
Query: 234 PVNQNGSDGNSIPGPANSQITQAVFEKEKGEYQVRVVKQILWVNGMRYELQEIYGIGNSV 293
+N++ D +I N ++ Q EKEK M+ + +E+ N
Sbjct: 6 ELNRSKKDFEAIIQAKNKELEQTKEEKEK----------------MQAQKEEVLSHMN-- 47
Query: 294 DGDVDANDPGKECVICLSEPRDTTVLPCRHMCMCSGCAKVLRFQTNRCPICRQPV 348
DV N+ +C+IC + L C H CS C + CPICR+ +
Sbjct: 48 --DVLENEL--QCIICSEYFIEAVTLNCAHS-FCSYCINEWMKRKIECPICRKDI 97
>pdb|4A4C|A Chain A, Structure Of Phosphotyr371-C-Cbl-Ubch5b-Zap-70 Complex
Length = 391
Score = 31.2 bits (69), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 20/41 (48%), Gaps = 2/41 (4%)
Query: 306 CVICLSEPRDTTVLPCRHMCMCSGCAKVLRFQTNR-CPICR 345
C IC +D + PC H+ MC+ C + + CP CR
Sbjct: 337 CKICAENDKDVKIEPCGHL-MCTSCLTSWQESEGQGCPFCR 376
>pdb|4A4B|A Chain A, Structure Of Modified Phosphotyr371-C-Cbl-Ubch5b-Zap-70
Complex
Length = 391
Score = 31.2 bits (69), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 20/41 (48%), Gaps = 2/41 (4%)
Query: 306 CVICLSEPRDTTVLPCRHMCMCSGCAKVLRFQTNR-CPICR 345
C IC +D + PC H+ MC+ C + + CP CR
Sbjct: 337 CKICAENDKDVKIEPCGHL-MCTSCLTSWQESEGQGCPFCR 376
>pdb|2Y1M|A Chain A, Structure Of Native C-Cbl
pdb|2Y1M|B Chain B, Structure Of Native C-Cbl
pdb|2Y1M|C Chain C, Structure Of Native C-Cbl
pdb|2Y1M|D Chain D, Structure Of Native C-Cbl
pdb|2Y1M|E Chain E, Structure Of Native C-Cbl
pdb|2Y1M|F Chain F, Structure Of Native C-Cbl
pdb|2Y1N|A Chain A, Structure Of C-Cbl-Zap-70 Peptide Complex
pdb|2Y1N|C Chain C, Structure Of C-Cbl-Zap-70 Peptide Complex
Length = 389
Score = 31.2 bits (69), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 20/41 (48%), Gaps = 2/41 (4%)
Query: 306 CVICLSEPRDTTVLPCRHMCMCSGCAKVLRFQTNR-CPICR 345
C IC +D + PC H+ MC+ C + + CP CR
Sbjct: 335 CKICAENDKDVKIEPCGHL-MCTSCLTSWQESEGQGCPFCR 374
>pdb|1FBV|A Chain A, Structure Of A Cbl-Ubch7 Complex: Ring Domain Function In
Ubiquitin-Protein Ligases
Length = 388
Score = 31.2 bits (69), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 20/41 (48%), Gaps = 2/41 (4%)
Query: 306 CVICLSEPRDTTVLPCRHMCMCSGCAKVLRFQTNR-CPICR 345
C IC +D + PC H+ MC+ C + + CP CR
Sbjct: 335 CKICAENDKDVKIEPCGHL-MCTSCLTSWQESEGQGCPFCR 374
>pdb|2EP4|A Chain A, Solution Structure Of Ring Finger From Human Ring Finger
Protein 24
Length = 74
Score = 30.4 bits (67), Expect = 1.4, Method: Composition-based stats.
Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 6/57 (10%)
Query: 306 CVICLSE--PRDTT-VLPCRHMCMCSGCAKVLRFQTNRCPICRQPVERLLEIKVNGP 359
C +CL + PRD + PC+H K L + CP+C PV +L ++ +GP
Sbjct: 18 CAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEVR-KVCPLCNMPVLQLAQL--SGP 71
>pdb|3HCT|A Chain A, Crystal Structure Of Traf6 In Complex With Ubc13 In The P1
Space Group
pdb|3HCU|A Chain A, Crystal Structure Of Traf6 In Complex With Ubc13 In The C2
Space Group
pdb|3HCU|C Chain C, Crystal Structure Of Traf6 In Complex With Ubc13 In The C2
Space Group
Length = 118
Score = 30.0 bits (66), Expect = 1.9, Method: Composition-based stats.
Identities = 19/62 (30%), Positives = 29/62 (46%), Gaps = 5/62 (8%)
Query: 283 LQEIYGIGNSVDGDVDANDPGKECVICLSEPRDTTVLPCRHMCMCSGC-AKVLRFQTNRC 341
++EI G D +++ EC ICL R+ PC H C C K +R ++C
Sbjct: 1 MEEIQGYDVEFDPPLESK---YECPICLMALREAVQTPCGHR-FCKACIIKSIRDAGHKC 56
Query: 342 PI 343
P+
Sbjct: 57 PV 58
>pdb|2JMD|A Chain A, Solution Structure Of The Ring Domain Of Human Traf6
Length = 63
Score = 30.0 bits (66), Expect = 2.0, Method: Composition-based stats.
Identities = 15/40 (37%), Positives = 20/40 (50%), Gaps = 2/40 (5%)
Query: 305 ECVICLSEPRDTTVLPCRHMCMCSGC-AKVLRFQTNRCPI 343
EC ICL R+ PC H C C K +R ++CP+
Sbjct: 8 ECPICLMALREAVQTPCGHR-FCKACIIKSIRDAGHKCPV 46
>pdb|2ECI|A Chain A, Solution Structure Of The Ring Domain Of The Human Tnf
Receptor-Associated Factor 6 Protein
Length = 86
Score = 30.0 bits (66), Expect = 2.2, Method: Composition-based stats.
Identities = 19/62 (30%), Positives = 29/62 (46%), Gaps = 5/62 (8%)
Query: 283 LQEIYGIGNSVDGDVDANDPGKECVICLSEPRDTTVLPCRHMCMCSGC-AKVLRFQTNRC 341
++EI G D +++ EC ICL R+ PC H C C K +R ++C
Sbjct: 8 MEEIQGYDVEFDPPLESK---YECPICLMALREAVQTPCGHR-FCKACIIKSIRDAGHKC 63
Query: 342 PI 343
P+
Sbjct: 64 PV 65
>pdb|2YUR|A Chain A, Solution Structure Of The Ring Finger Of Human
Retinoblastoma-Binding Protein 6
Length = 74
Score = 30.0 bits (66), Expect = 2.2, Method: Composition-based stats.
Identities = 13/43 (30%), Positives = 19/43 (44%), Gaps = 2/43 (4%)
Query: 306 CVICLSEPRDTTVLPCRHMCMCSGCAKVLRFQTNR--CPICRQ 346
C+IC D V+PC C C + +++ CP C Q
Sbjct: 18 CLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQ 60
>pdb|3ZTG|A Chain A, Solution Structure Of The Ring Finger-Like Domain Of
Retinoblastoma Binding Protein-6 (Rbbp6)
pdb|3ZTG|B Chain B, Solution Structure Of The Ring Finger-Like Domain Of
Retinoblastoma Binding Protein-6 (Rbbp6)
Length = 92
Score = 29.6 bits (65), Expect = 2.5, Method: Composition-based stats.
Identities = 13/43 (30%), Positives = 19/43 (44%), Gaps = 2/43 (4%)
Query: 306 CVICLSEPRDTTVLPCRHMCMCSGCAKVLRFQTNR--CPICRQ 346
C+IC D V+PC C C + +++ CP C Q
Sbjct: 16 CLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQ 58
>pdb|1IYM|A Chain A, Ring-H2 Finger Domain Of El5
Length = 55
Score = 29.3 bits (64), Expect = 3.6, Method: Composition-based stats.
Identities = 19/54 (35%), Positives = 25/54 (46%), Gaps = 5/54 (9%)
Query: 299 ANDPGKECVICLSEPRD---TTVLP-CRHMCMCSGCAKVLRFQTNRCPICRQPV 348
A D G EC +CL+E D LP C H + C + + CP+CR V
Sbjct: 1 AMDDGVECAVCLAELEDGEEARFLPRCGH-GFHAECVDMWLGSHSTCPLCRLTV 53
>pdb|2G9O|A Chain A, Solution Structure Of The Apo Form Of The Third Metal-
Binding Domain Of Atp7a Protein (Menkes Disease Protein)
pdb|2GA7|A Chain A, Solution Structure Of The Copper(I) Form Of The Third
Metal- Binding Domain Of Atp7a Protein (Menkes Disease
Protein)
Length = 90
Score = 27.7 bits (60), Expect = 9.1, Method: Composition-based stats.
Identities = 13/45 (28%), Positives = 25/45 (55%)
Query: 124 VEHQKAVTIRNDVNLKKESLKLEADEENPGKLLVSFTFDATVAGR 168
+E++ A+ + N ++ ESL+ + +PG VS T + + GR
Sbjct: 38 LENRSAIVVYNASSVTPESLRKAIEAVSPGLYRVSITSEVEIEGR 82
>pdb|2CSY|A Chain A, Solution Structure Of The Ring Domain Of The Zinc Finger
Protein 183-Like 1
Length = 81
Score = 27.7 bits (60), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 27/64 (42%), Gaps = 9/64 (14%)
Query: 306 CVICLSEPRDTTVLPCRHMCMCSGCAKVLRFQTNRCPICRQPV--------ERLLEIKVN 357
C IC ++ V CRH C CA T RC IC QP E + +++ +
Sbjct: 18 CFICRQAFQNPVVTKCRHY-FCESCALEHFRATPRCYICDQPTGGIFNPAKELMAKLQKS 76
Query: 358 GPEE 361
GP
Sbjct: 77 GPSS 80
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.136 0.410
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,676,222
Number of Sequences: 62578
Number of extensions: 332756
Number of successful extensions: 688
Number of sequences better than 100.0: 43
Number of HSP's better than 100.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 21
Number of HSP's that attempted gapping in prelim test: 662
Number of HSP's gapped (non-prelim): 43
length of query: 361
length of database: 14,973,337
effective HSP length: 100
effective length of query: 261
effective length of database: 8,715,537
effective search space: 2274755157
effective search space used: 2274755157
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)