Query 046132
Match_columns 361
No_of_seqs 305 out of 1516
Neff 5.6
Searched_HMMs 46136
Date Fri Mar 29 09:03:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046132.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/046132hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4265 Predicted E3 ubiquitin 100.0 3.6E-61 7.9E-66 467.7 21.5 240 114-361 97-348 (349)
2 PF13920 zf-C3HC4_3: Zinc fing 99.3 7.2E-13 1.6E-17 96.2 2.8 49 303-351 2-50 (50)
3 KOG4172 Predicted E3 ubiquitin 99.3 1.9E-13 4.1E-18 101.0 -1.8 52 304-355 8-60 (62)
4 KOG4275 Predicted E3 ubiquitin 99.0 2.4E-11 5.3E-16 116.7 -3.7 90 261-355 248-348 (350)
5 KOG0823 Predicted E3 ubiquitin 98.8 3E-09 6.5E-14 99.7 5.3 59 300-359 44-107 (230)
6 PLN03208 E3 ubiquitin-protein 98.8 4.4E-09 9.6E-14 96.7 5.5 57 301-358 16-90 (193)
7 PHA02929 N1R/p28-like protein; 98.8 3.4E-09 7.4E-14 100.6 4.7 54 302-356 173-234 (238)
8 KOG0317 Predicted E3 ubiquitin 98.8 3.1E-09 6.8E-14 102.3 3.6 51 301-352 237-287 (293)
9 PF13639 zf-RING_2: Ring finge 98.7 3.5E-09 7.6E-14 74.7 1.6 40 305-345 2-44 (44)
10 KOG1571 Predicted E3 ubiquitin 98.7 4.9E-09 1.1E-13 103.6 1.8 53 300-356 302-354 (355)
11 PF13923 zf-C3HC4_2: Zinc fing 98.7 1E-08 2.2E-13 70.7 2.4 38 306-344 1-39 (39)
12 PF15227 zf-C3HC4_4: zinc fing 98.5 9.7E-08 2.1E-12 67.4 3.1 38 306-344 1-42 (42)
13 KOG0320 Predicted E3 ubiquitin 98.5 7.6E-08 1.6E-12 87.2 2.9 53 303-356 131-187 (187)
14 cd00162 RING RING-finger (Real 98.5 1.3E-07 2.8E-12 64.7 3.3 43 305-348 1-45 (45)
15 PHA02926 zinc finger-like prot 98.4 1.1E-07 2.3E-12 89.1 2.5 50 302-352 169-233 (242)
16 PF14634 zf-RING_5: zinc-RING 98.4 2.7E-07 5.8E-12 65.4 2.8 41 305-346 1-44 (44)
17 smart00184 RING Ring finger. E 98.3 4.3E-07 9.2E-12 59.9 3.1 38 306-344 1-39 (39)
18 KOG1100 Predicted E3 ubiquitin 98.3 1.6E-07 3.4E-12 87.8 1.2 46 306-355 161-206 (207)
19 PF00097 zf-C3HC4: Zinc finger 98.3 3.5E-07 7.6E-12 63.2 2.4 38 306-344 1-41 (41)
20 TIGR00599 rad18 DNA repair pro 98.3 3.4E-07 7.3E-12 92.8 3.2 52 298-350 21-72 (397)
21 COG5540 RING-finger-containing 98.3 5.1E-07 1.1E-11 87.8 3.9 49 300-349 320-372 (374)
22 smart00504 Ubox Modified RING 98.3 6.6E-07 1.4E-11 66.9 3.6 46 304-350 2-47 (63)
23 KOG4628 Predicted E3 ubiquitin 98.2 8.6E-07 1.9E-11 88.2 3.6 48 304-352 230-281 (348)
24 COG5243 HRD1 HRD ubiquitin lig 98.2 1E-06 2.2E-11 87.6 3.0 48 300-348 284-344 (491)
25 PF12678 zf-rbx1: RING-H2 zinc 98.2 1.7E-06 3.7E-11 67.9 3.5 40 305-345 21-73 (73)
26 COG5574 PEX10 RING-finger-cont 98.1 1.1E-06 2.5E-11 83.9 2.6 49 301-350 213-263 (271)
27 KOG1785 Tyrosine kinase negati 98.1 8.3E-07 1.8E-11 88.9 1.3 53 303-356 369-423 (563)
28 KOG2164 Predicted E3 ubiquitin 98.1 1.7E-06 3.8E-11 89.0 3.3 55 303-358 186-247 (513)
29 PF13445 zf-RING_UBOX: RING-ty 98.0 3.6E-06 7.8E-11 59.9 1.7 31 306-338 1-35 (43)
30 KOG2177 Predicted E3 ubiquitin 97.9 2.5E-06 5.4E-11 78.4 0.9 46 300-346 10-55 (386)
31 KOG0802 E3 ubiquitin ligase [P 97.9 3.7E-06 8E-11 88.6 2.0 48 301-349 289-341 (543)
32 KOG0287 Postreplication repair 97.8 5.6E-06 1.2E-10 81.7 0.4 49 301-350 21-69 (442)
33 COG5432 RAD18 RING-finger-cont 97.8 8.3E-06 1.8E-10 79.1 1.1 49 301-350 23-71 (391)
34 KOG0978 E3 ubiquitin ligase in 97.7 6.4E-06 1.4E-10 88.2 -0.2 54 302-356 642-698 (698)
35 KOG0824 Predicted E3 ubiquitin 97.7 1.4E-05 3E-10 77.8 1.7 49 302-351 6-55 (324)
36 PF04564 U-box: U-box domain; 97.7 2.5E-05 5.5E-10 61.1 2.7 47 303-350 4-51 (73)
37 COG5236 Uncharacterized conser 97.7 4E-05 8.7E-10 76.0 4.4 53 299-352 57-111 (493)
38 KOG1039 Predicted E3 ubiquitin 97.5 4.2E-05 9.1E-10 76.5 2.3 51 301-352 159-224 (344)
39 TIGR00570 cdk7 CDK-activating 97.5 8.5E-05 1.8E-09 73.1 3.5 46 304-350 4-55 (309)
40 KOG1924 RhoA GTPase effector D 97.5 0.00043 9.2E-09 74.8 8.7 32 117-149 606-638 (1102)
41 KOG0311 Predicted E3 ubiquitin 97.3 1.9E-05 4E-10 78.4 -3.8 55 302-357 42-98 (381)
42 KOG4692 Predicted E3 ubiquitin 97.2 0.00017 3.8E-09 71.7 2.6 49 301-350 420-468 (489)
43 KOG0828 Predicted E3 ubiquitin 97.2 0.00017 3.7E-09 74.3 2.1 49 301-350 569-635 (636)
44 PF14447 Prok-RING_4: Prokaryo 97.0 0.00031 6.7E-09 52.4 1.3 45 303-350 7-51 (55)
45 PF12861 zf-Apc11: Anaphase-pr 97.0 0.00068 1.5E-08 55.0 3.4 32 317-349 48-82 (85)
46 KOG4159 Predicted E3 ubiquitin 97.0 0.00039 8.5E-09 70.9 2.5 49 301-350 82-130 (398)
47 smart00744 RINGv The RING-vari 96.4 0.0025 5.3E-08 46.4 2.6 40 305-345 1-49 (49)
48 PF04641 Rtf2: Rtf2 RING-finge 96.4 0.0075 1.6E-07 58.1 6.4 59 300-360 110-172 (260)
49 PF14835 zf-RING_6: zf-RING of 96.3 0.0009 2E-08 51.6 -0.4 43 303-348 7-50 (65)
50 COG5152 Uncharacterized conser 96.2 0.0024 5.1E-08 59.4 1.9 50 303-353 196-245 (259)
51 KOG2879 Predicted E3 ubiquitin 96.1 0.0052 1.1E-07 59.5 3.9 53 299-352 235-290 (298)
52 KOG0825 PHD Zn-finger protein 96.1 0.0013 2.8E-08 71.2 -0.4 50 304-354 124-176 (1134)
53 KOG0804 Cytoplasmic Zn-finger 96.1 0.0059 1.3E-07 62.6 4.3 46 300-348 172-221 (493)
54 KOG0297 TNF receptor-associate 95.9 0.0044 9.5E-08 63.2 2.1 53 300-353 18-71 (391)
55 KOG1813 Predicted E3 ubiquitin 95.7 0.0048 1E-07 60.3 1.7 49 303-352 241-289 (313)
56 COG5219 Uncharacterized conser 95.3 0.007 1.5E-07 66.8 1.2 48 301-349 1467-1523(1525)
57 KOG3039 Uncharacterized conser 94.9 0.027 5.8E-07 54.1 4.0 75 276-351 188-272 (303)
58 KOG2113 Predicted RNA binding 94.9 0.026 5.7E-07 55.8 3.9 55 298-354 338-392 (394)
59 KOG4367 Predicted Zn-finger pr 94.7 0.017 3.7E-07 59.3 2.1 37 301-338 2-38 (699)
60 KOG1002 Nucleotide excision re 94.7 0.012 2.6E-07 61.7 0.9 49 299-348 532-585 (791)
61 PF03854 zf-P11: P-11 zinc fin 94.6 0.016 3.5E-07 42.1 1.2 45 305-352 4-49 (50)
62 KOG1814 Predicted E3 ubiquitin 94.5 0.016 3.5E-07 59.0 1.3 44 302-346 183-237 (445)
63 KOG3002 Zn finger protein [Gen 94.2 0.024 5.3E-07 55.9 1.9 44 302-350 47-92 (299)
64 PF14570 zf-RING_4: RING/Ubox 94.2 0.024 5.2E-07 41.3 1.4 42 306-348 1-47 (48)
65 PF07800 DUF1644: Protein of u 94.2 0.058 1.3E-06 48.6 4.1 52 303-354 2-96 (162)
66 KOG2660 Locus-specific chromos 94.0 0.013 2.9E-07 58.0 -0.4 50 301-351 13-63 (331)
67 KOG1734 Predicted RING-contain 93.8 0.033 7.1E-07 54.1 1.8 50 300-350 221-282 (328)
68 PF05883 Baculo_RING: Baculovi 93.7 0.029 6.2E-07 49.3 1.2 34 303-337 26-68 (134)
69 KOG1001 Helicase-like transcri 93.4 0.032 6.9E-07 60.7 1.1 45 304-350 455-501 (674)
70 KOG4739 Uncharacterized protei 93.1 0.038 8.1E-07 52.7 1.0 43 305-350 5-49 (233)
71 KOG0827 Predicted E3 ubiquitin 92.9 0.078 1.7E-06 53.9 3.0 49 303-352 4-59 (465)
72 KOG1645 RING-finger-containing 92.6 0.088 1.9E-06 53.8 3.0 46 301-347 2-54 (463)
73 PF05290 Baculo_IE-1: Baculovi 92.3 0.078 1.7E-06 46.5 1.8 48 303-351 80-134 (140)
74 KOG4185 Predicted E3 ubiquitin 92.0 0.1 2.2E-06 50.6 2.6 44 304-348 4-54 (296)
75 COG5175 MOT2 Transcriptional r 91.8 0.079 1.7E-06 53.0 1.5 46 304-350 15-65 (480)
76 PHA03096 p28-like protein; Pro 91.7 0.087 1.9E-06 51.7 1.7 42 304-346 179-231 (284)
77 KOG1428 Inhibitor of type V ad 91.7 0.1 2.3E-06 60.2 2.4 50 300-350 3483-3545(3738)
78 PF11793 FANCL_C: FANCL C-term 91.6 0.025 5.3E-07 44.1 -1.8 46 303-349 2-66 (70)
79 PHA02825 LAP/PHD finger-like p 91.6 0.21 4.5E-06 45.1 3.7 49 300-349 5-59 (162)
80 KOG2932 E3 ubiquitin ligase in 91.1 0.048 1E-06 53.9 -0.8 47 305-354 92-139 (389)
81 COG5194 APC11 Component of SCF 90.8 0.22 4.8E-06 40.1 2.9 31 317-348 50-80 (88)
82 COG5222 Uncharacterized conser 90.1 0.13 2.8E-06 50.8 1.2 42 304-346 275-318 (427)
83 KOG0826 Predicted E3 ubiquitin 90.0 0.21 4.6E-06 49.8 2.6 54 301-355 298-354 (357)
84 PF11789 zf-Nse: Zinc-finger o 88.7 0.3 6.5E-06 36.7 2.0 41 302-343 10-53 (57)
85 KOG4445 Uncharacterized conser 87.6 0.23 4.9E-06 49.1 0.9 46 303-349 115-186 (368)
86 PF10272 Tmpp129: Putative tra 87.1 0.7 1.5E-05 46.9 4.1 29 321-350 311-352 (358)
87 PHA02862 5L protein; Provision 86.7 0.64 1.4E-05 41.5 3.1 46 303-349 2-53 (156)
88 KOG3113 Uncharacterized conser 86.0 0.96 2.1E-05 43.8 4.1 58 301-361 109-170 (293)
89 KOG2930 SCF ubiquitin ligase, 81.7 0.76 1.7E-05 38.8 1.4 29 318-347 78-106 (114)
90 PF10367 Vps39_2: Vacuolar sor 81.4 0.65 1.4E-05 37.6 0.9 31 301-332 76-108 (109)
91 KOG3842 Adaptor protein Pellin 81.4 1.2 2.5E-05 44.5 2.7 48 301-350 339-415 (429)
92 KOG3899 Uncharacterized conser 81.3 1.1 2.4E-05 44.2 2.5 39 301-350 315-366 (381)
93 COG5220 TFB3 Cdk activating ki 81.2 0.49 1.1E-05 45.5 0.1 45 302-347 9-62 (314)
94 KOG3799 Rab3 effector RIM1 and 81.1 0.44 9.5E-06 42.1 -0.3 45 301-349 63-118 (169)
95 KOG1493 Anaphase-promoting com 80.4 0.5 1.1E-05 37.9 -0.2 28 320-348 50-80 (84)
96 KOG3800 Predicted E3 ubiquitin 79.8 1.3 2.9E-05 43.5 2.6 30 318-348 20-50 (300)
97 PHA03247 large tegument protei 79.4 16 0.00036 45.5 11.5 8 38-45 2885-2892(3151)
98 KOG2113 Predicted RNA binding 78.7 0.5 1.1E-05 47.0 -0.7 53 303-355 136-189 (394)
99 PF12906 RINGv: RING-variant d 77.3 1.1 2.3E-05 32.3 0.8 39 306-344 1-47 (47)
100 KOG3579 Predicted E3 ubiquitin 74.4 1.2 2.7E-05 43.7 0.7 32 303-335 268-303 (352)
101 KOG4362 Transcriptional regula 74.3 0.72 1.6E-05 50.2 -1.1 48 302-350 20-70 (684)
102 COG5183 SSM4 Protein involved 74.0 2.6 5.6E-05 46.8 2.9 49 301-349 10-66 (1175)
103 KOG3053 Uncharacterized conser 73.2 1.9 4.1E-05 41.9 1.6 52 299-350 16-83 (293)
104 PLN02189 cellulose synthase 73.1 3 6.5E-05 47.5 3.3 48 302-350 33-88 (1040)
105 KOG1952 Transcription factor N 72.2 2.5 5.5E-05 47.0 2.4 45 302-347 190-245 (950)
106 PF04216 FdhE: Protein involve 71.5 0.86 1.9E-05 44.5 -1.2 53 302-355 171-228 (290)
107 KOG3970 Predicted E3 ubiquitin 71.4 3.4 7.3E-05 39.6 2.7 47 303-350 50-106 (299)
108 PF04710 Pellino: Pellino; In 70.8 1.4 2.9E-05 45.2 0.0 54 302-356 327-411 (416)
109 KOG0298 DEAD box-containing he 70.5 1.1 2.4E-05 51.8 -0.8 44 304-348 1154-1198(1394)
110 KOG0825 PHD Zn-finger protein 69.7 2.1 4.5E-05 47.4 1.1 50 301-351 97-156 (1134)
111 TIGR01562 FdhE formate dehydro 67.2 2.1 4.5E-05 42.6 0.5 54 302-357 183-242 (305)
112 KOG4672 Uncharacterized conser 66.8 48 0.001 34.5 9.9 11 137-147 425-435 (487)
113 KOG1941 Acetylcholine receptor 65.9 1.6 3.4E-05 44.8 -0.7 48 301-349 363-416 (518)
114 KOG3161 Predicted E3 ubiquitin 62.1 3 6.6E-05 45.2 0.5 36 304-342 12-51 (861)
115 PF02891 zf-MIZ: MIZ/SP-RING z 61.1 7 0.00015 28.4 2.1 43 304-347 3-50 (50)
116 KOG1940 Zn-finger protein [Gen 60.5 4.9 0.00011 39.5 1.6 41 305-346 160-204 (276)
117 KOG2068 MOT2 transcription fac 60.3 5.6 0.00012 39.9 2.0 46 304-350 250-299 (327)
118 KOG2817 Predicted E3 ubiquitin 59.6 7.5 0.00016 39.9 2.8 44 304-348 335-384 (394)
119 PRK03564 formate dehydrogenase 54.2 5.3 0.00011 39.9 0.7 44 302-346 186-234 (309)
120 KOG1609 Protein involved in mR 51.1 12 0.00027 35.8 2.7 48 303-350 78-135 (323)
121 KOG1812 Predicted E3 ubiquitin 50.6 6 0.00013 40.5 0.5 31 302-333 145-179 (384)
122 PF12868 DUF3824: Domain of un 47.7 1.6E+02 0.0035 26.0 8.9 6 73-78 97-102 (137)
123 KOG3039 Uncharacterized conser 45.2 17 0.00037 35.4 2.5 32 301-333 41-72 (303)
124 KOG0801 Predicted E3 ubiquitin 42.8 12 0.00027 34.1 1.2 22 301-322 175-199 (205)
125 KOG0269 WD40 repeat-containing 41.7 23 0.0005 39.3 3.2 39 304-343 780-820 (839)
126 TIGR00622 ssl1 transcription f 41.7 22 0.00048 30.5 2.5 41 304-345 56-110 (112)
127 KOG2114 Vacuolar assembly/sort 40.5 8.1 0.00018 43.2 -0.4 46 304-353 841-887 (933)
128 PF08746 zf-RING-like: RING-li 40.0 27 0.00059 24.6 2.3 38 306-344 1-43 (43)
129 KOG1815 Predicted E3 ubiquitin 39.4 15 0.00033 38.1 1.4 49 302-351 69-128 (444)
130 KOG2807 RNA polymerase II tran 39.4 25 0.00054 35.5 2.7 43 302-345 329-374 (378)
131 KOG2231 Predicted E3 ubiquitin 38.8 2.8 6.1E-05 45.7 -4.2 50 300-351 75-127 (669)
132 KOG0309 Conserved WD40 repeat- 37.6 22 0.00047 39.7 2.2 39 304-343 1029-1069(1081)
133 COG4306 Uncharacterized protei 37.1 17 0.00037 31.9 1.1 25 326-353 30-54 (160)
134 KOG3268 Predicted E3 ubiquitin 37.0 16 0.00035 33.9 1.0 48 301-349 163-228 (234)
135 PF12868 DUF3824: Domain of un 36.2 82 0.0018 27.9 5.2 9 75-83 75-83 (137)
136 KOG4849 mRNA cleavage factor I 35.9 4.9E+02 0.011 26.9 11.2 11 207-217 357-367 (498)
137 PF14569 zf-UDP: Zinc-binding 35.6 26 0.00055 28.3 1.8 48 302-350 8-63 (80)
138 PF10764 Gin: Inhibitor of sig 34.0 43 0.00094 24.1 2.6 31 305-337 1-31 (46)
139 KOG4218 Nuclear hormone recept 33.5 27 0.00058 35.6 2.0 29 300-332 12-40 (475)
140 PF07975 C1_4: TFIIH C1-like d 33.4 26 0.00056 25.9 1.4 25 320-345 26-50 (51)
141 KOG2034 Vacuolar sorting prote 32.1 24 0.00051 39.9 1.4 32 301-333 815-848 (911)
142 KOG4265 Predicted E3 ubiquitin 31.7 3.4E+02 0.0073 27.8 9.3 27 125-151 78-104 (349)
143 PF04710 Pellino: Pellino; In 31.1 16 0.00035 37.7 0.0 36 316-356 304-345 (416)
144 PF10083 DUF2321: Uncharacteri 31.0 26 0.00056 31.7 1.3 27 322-352 27-53 (158)
145 PF13240 zinc_ribbon_2: zinc-r 30.8 9.2 0.0002 23.5 -1.1 22 326-347 1-22 (23)
146 PLN02638 cellulose synthase A 29.6 63 0.0014 37.5 4.3 48 302-350 16-71 (1079)
147 KOG4185 Predicted E3 ubiquitin 28.4 7.8 0.00017 37.5 -2.7 44 303-347 207-265 (296)
148 PLN02436 cellulose synthase A 27.3 42 0.00091 38.9 2.4 48 302-350 35-90 (1094)
149 PF06906 DUF1272: Protein of u 27.3 52 0.0011 25.0 2.1 22 326-349 31-52 (57)
150 PF04423 Rad50_zn_hook: Rad50 27.2 22 0.00047 25.9 0.1 12 339-350 21-32 (54)
151 KOG0955 PHD finger protein BR1 26.3 29 0.00063 40.1 0.9 17 299-315 215-231 (1051)
152 KOG0956 PHD finger protein AF1 26.2 56 0.0012 36.2 2.9 43 305-347 7-71 (900)
153 KOG0153 Predicted RNA-binding 25.2 35 0.00076 34.7 1.2 54 301-358 39-97 (377)
154 PLN02400 cellulose synthase 25.1 49 0.0011 38.3 2.4 49 302-351 35-91 (1085)
155 KOG0006 E3 ubiquitin-protein l 24.0 57 0.0012 33.0 2.3 31 302-333 220-252 (446)
156 PF07191 zinc-ribbons_6: zinc- 24.0 4.5 9.8E-05 31.8 -4.2 42 304-351 2-43 (70)
157 KOG3842 Adaptor protein Pellin 23.3 44 0.00095 33.8 1.4 41 315-356 316-358 (429)
158 cd05711 Ig_FcalphaRI Immunoglo 21.7 2.9E+02 0.0064 21.8 5.8 53 121-173 9-71 (94)
159 PF06937 EURL: EURL protein; 20.8 58 0.0012 32.1 1.6 16 327-342 58-74 (285)
160 PF07777 MFMR: G-box binding p 20.6 2.7E+02 0.0059 26.1 5.9 6 78-83 62-67 (189)
161 PLN02915 cellulose synthase A 20.2 1.1E+02 0.0023 35.5 3.9 48 302-350 14-69 (1044)
No 1
>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.6e-61 Score=467.69 Aligned_cols=240 Identities=55% Similarity=0.893 Sum_probs=213.3
Q ss_pred CCCCCCCCCccccceeeeEeeceEecCcceEEEEcCCCCCeEEEEEEEeccCCeeeEEEecc---------CCCCCCCCC
Q 046132 114 GPMMAPPPPYVEHQKAVTIRNDVNLKKESLKLEADEENPGKLLVSFTFDATVAGRRRRLQPG---------TNKENLFAP 184 (361)
Q Consensus 114 ~~~~~~~~p~ve~q~t~tIrn~VNlrK~SLRl~~~~~~~~~~~l~F~FDa~~~~~ItI~~~~---------~~~~~~~~p 184 (361)
.-.+..+-+|| ||+|+||||+||++|++++++.|+.+++.|+|+|+|||+..|+|+|+|+. ..++..+.+
T Consensus 97 ~~~~~~~~~~~-~~~av~i~~d~~l~k~~~~l~~d~~~P~~~~~sf~fda~~~g~itV~~fakE~~~c~~~~~~~~~~~~ 175 (349)
T KOG4265|consen 97 LLVCAPPDQYL-HQKAVTIRNDVNLDKETLRLDPDPLTPGLLLLSFTFDALAQGAITVLFFAKEEVLCGLVLLVPDELPS 175 (349)
T ss_pred ceEecCCCccc-cccceeccchhhcccceEEeccCCCCcceeEEEEEeccccCccEEEEEeccccccccccccccccCCC
Confidence 33455666799 99999999999999999999999999999999999999999999999943 334555889
Q ss_pred eeEeecCCCCceeeCCCCCcccCCccchhhhhccCCCceeeEEEEEeecCCCCCCCCCCCCCCCCcchhhhhhhhhc-cC
Q 046132 185 VTVQFQRGLGQKFRQPSGTGIDFSMFEETELLKEGNMDVYPLAVKADASPVNQNGSDGNSIPGPANSQITQAVFEKE-KG 263 (361)
Q Consensus 185 ~~~~f~~Gl~Q~F~q~~~~~id~~~~~~~eL~~~~~~~~~PLVI~~~~~~~~~~~~~~~~~~~~~~~qit~a~lek~-~~ 263 (361)
+|++|++|++|+|.|++ ++||++.|+++||.++.++++|||+|++++.... .+ ....++.++|+++.+++ +|
T Consensus 176 ~t~~f~~gl~Q~F~q~s-~~~D~~~~~~~~L~~~~~~~vyplsi~~~~~~~~----~~--~~~~~~~~~tq~v~~~~~~G 248 (349)
T KOG4265|consen 176 ITVHFEKGLGQLFLQPS-TGIDFSVMSIDDLSLSLDRRVYPLSISAEVQPSD----VV--ESMGVFHVITQAVYEKDEKG 248 (349)
T ss_pred eeEEcccchhhhhcCCc-cccchhhcchhhhcccccCCeeeEEEEEEEeccc----cc--cccceeeEEEeeeeccCcCC
Confidence 99999999999999999 8999999999999998899999999999987543 11 22235889999999985 89
Q ss_pred ceeeeeeeeeeeecCeeeeehhhhcCCCCCCCCC--CCCCCCCeeeecccCCCCeEEeCCCCcccCHHHHHHHhccCCCC
Q 046132 264 EYQVRVVKQILWVNGMRYELQEIYGIGNSVDGDV--DANDPGKECVICLSEPRDTTVLPCRHMCMCSGCAKVLRFQTNRC 341 (361)
Q Consensus 264 ~~~vrvlkQ~l~v~g~~yeLqeiygi~~s~~~~~--~~~~~~~eCvICl~~~~d~vlLPCgH~cfC~~Ca~~l~~qs~~C 341 (361)
+++++++||++|++|.+|+|||||||+++..+.. ++.+++++|+|||++.+|+++|||||+|+|.+|++.|+.+.++|
T Consensus 249 ~~~~~~~kQ~~~v~g~~y~LqEiyGien~~v~~~~~~~~~~gkeCVIClse~rdt~vLPCRHLCLCs~Ca~~Lr~q~n~C 328 (349)
T KOG4265|consen 249 SIKIKVLKQILWVDGTRYLLQEIYGIENSTVEGTDADESESGKECVICLSESRDTVVLPCRHLCLCSGCAKSLRYQTNNC 328 (349)
T ss_pred ceeeeeeeeEEEEeCceeeeehhhccccCCCCCCccccccCCCeeEEEecCCcceEEecchhhehhHhHHHHHHHhhcCC
Confidence 9999999999999999999999999996654332 24577899999999999999999999999999999999999999
Q ss_pred ccccccccceEEEEcCCCCC
Q 046132 342 PICRQPVERLLEIKVNGPEE 361 (361)
Q Consensus 342 PICR~~I~~ll~I~v~~~~~ 361 (361)
||||++|..+++|+++++++
T Consensus 329 PICRqpi~~ll~i~~~~~~~ 348 (349)
T KOG4265|consen 329 PICRQPIEELLEIYVNKEDR 348 (349)
T ss_pred CccccchHhhheeccccccC
Confidence 99999999999999998764
No 2
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A ....
Probab=99.32 E-value=7.2e-13 Score=96.18 Aligned_cols=49 Identities=49% Similarity=1.233 Sum_probs=43.7
Q ss_pred CCeeeecccCCCCeEEeCCCCcccCHHHHHHHhccCCCCccccccccce
Q 046132 303 GKECVICLSEPRDTTVLPCRHMCMCSGCAKVLRFQTNRCPICRQPVERL 351 (361)
Q Consensus 303 ~~eCvICl~~~~d~vlLPCgH~cfC~~Ca~~l~~qs~~CPICR~~I~~l 351 (361)
+.+|.||+++.++++++||||++||..|+.+|+....+||+||++|+++
T Consensus 2 ~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CP~Cr~~i~~V 50 (50)
T PF13920_consen 2 DEECPICFENPRDVVLLPCGHLCFCEECAERLLKRKKKCPICRQPIESV 50 (50)
T ss_dssp HSB-TTTSSSBSSEEEETTCEEEEEHHHHHHHHHTTSBBTTTTBB-SEE
T ss_pred cCCCccCCccCCceEEeCCCChHHHHHHhHHhcccCCCCCcCChhhcCC
Confidence 4689999999999999999999999999999988889999999999764
No 3
>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.29 E-value=1.9e-13 Score=100.96 Aligned_cols=52 Identities=38% Similarity=0.983 Sum_probs=46.5
Q ss_pred CeeeecccCCCCeEEeCCCCcccCHHHHHHHhc-cCCCCccccccccceEEEE
Q 046132 304 KECVICLSEPRDTTVLPCRHMCMCSGCAKVLRF-QTNRCPICRQPVERLLEIK 355 (361)
Q Consensus 304 ~eCvICl~~~~d~vlLPCgH~cfC~~Ca~~l~~-qs~~CPICR~~I~~ll~I~ 355 (361)
.||.||++.+.|.++.-|||||+|++|+.+++. ....|||||++|..+++.+
T Consensus 8 dECTICye~pvdsVlYtCGHMCmCy~Cg~rl~~~~~g~CPiCRapi~dvIkTY 60 (62)
T KOG4172|consen 8 DECTICYEHPVDSVLYTCGHMCMCYACGLRLKKALHGCCPICRAPIKDVIKTY 60 (62)
T ss_pred cceeeeccCcchHHHHHcchHHhHHHHHHHHHHccCCcCcchhhHHHHHHHhh
Confidence 689999999999999999999999999999765 5678999999998877643
No 4
>KOG4275 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.97 E-value=2.4e-11 Score=116.68 Aligned_cols=90 Identities=34% Similarity=0.707 Sum_probs=67.3
Q ss_pred ccCceeeeeeeeeeeecCeeee-------e----hhhhcCCCCCCCCCCCCCCCCeeeecccCCCCeEEeCCCCcccCHH
Q 046132 261 EKGEYQVRVVKQILWVNGMRYE-------L----QEIYGIGNSVDGDVDANDPGKECVICLSEPRDTTVLPCRHMCMCSG 329 (361)
Q Consensus 261 ~~~~~~vrvlkQ~l~v~g~~ye-------L----qeiygi~~s~~~~~~~~~~~~eCvICl~~~~d~vlLPCgH~cfC~~ 329 (361)
..+...|+.||.++..++..|. + .++|. ++..+..........+|.|||+.++|.+||+|||+..|..
T Consensus 248 d~Eg~~v~qLke~l~~d~vsy~gCcek~el~d~vtrl~k-~~~g~~~~~s~~~~~LC~ICmDaP~DCvfLeCGHmVtCt~ 326 (350)
T KOG4275|consen 248 DEEGLTVRQLKEILDDDFVSYKGCCEKYELDDRVTRLYK-GNDGEQHSRSLATRRLCAICMDAPRDCVFLECGHMVTCTK 326 (350)
T ss_pred ccccchHHHhhhhhhccCCcccchhHHHHHHHHHHHHHh-cccccccccchhHHHHHHHHhcCCcceEEeecCcEEeehh
Confidence 4466788999999988888872 1 11221 1111111112233689999999999999999999999999
Q ss_pred HHHHHhccCCCCccccccccceEEEE
Q 046132 330 CAKVLRFQTNRCPICRQPVERLLEIK 355 (361)
Q Consensus 330 Ca~~l~~qs~~CPICR~~I~~ll~I~ 355 (361)
|.+.|. .|||||+-|.++++|+
T Consensus 327 CGkrm~----eCPICRqyi~rvvrif 348 (350)
T KOG4275|consen 327 CGKRMN----ECPICRQYIVRVVRIF 348 (350)
T ss_pred hccccc----cCchHHHHHHHHHhhh
Confidence 999885 8999999999988886
No 5
>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.85 E-value=3e-09 Score=99.67 Aligned_cols=59 Identities=25% Similarity=0.597 Sum_probs=49.9
Q ss_pred CCCCCeeeecccCCCCeEEeCCCCcccCHHHHHHHhccC---CCCcccccccc--ceEEEEcCCC
Q 046132 300 NDPGKECVICLSEPRDTTVLPCRHMCMCSGCAKVLRFQT---NRCPICRQPVE--RLLEIKVNGP 359 (361)
Q Consensus 300 ~~~~~eCvICl~~~~d~vlLPCgH~cfC~~Ca~~l~~qs---~~CPICR~~I~--~ll~I~v~~~ 359 (361)
+....+|-|||+..+|+|+..|||+ ||+.|+-+|.... ..||+|++.|. .++.|+-.++
T Consensus 44 ~~~~FdCNICLd~akdPVvTlCGHL-FCWpClyqWl~~~~~~~~cPVCK~~Vs~~~vvPlYGrG~ 107 (230)
T KOG0823|consen 44 DGGFFDCNICLDLAKDPVVTLCGHL-FCWPCLYQWLQTRPNSKECPVCKAEVSIDTVVPLYGRGS 107 (230)
T ss_pred CCCceeeeeeccccCCCEEeecccc-eehHHHHHHHhhcCCCeeCCccccccccceEEeeeccCC
Confidence 4456799999999999999999999 9999999997643 56999999885 5788877654
No 6
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=98.82 E-value=4.4e-09 Score=96.68 Aligned_cols=57 Identities=32% Similarity=0.761 Sum_probs=46.8
Q ss_pred CCCCeeeecccCCCCeEEeCCCCcccCHHHHHHHhcc----------------CCCCccccccccc--eEEEEcCC
Q 046132 301 DPGKECVICLSEPRDTTVLPCRHMCMCSGCAKVLRFQ----------------TNRCPICRQPVER--LLEIKVNG 358 (361)
Q Consensus 301 ~~~~eCvICl~~~~d~vlLPCgH~cfC~~Ca~~l~~q----------------s~~CPICR~~I~~--ll~I~v~~ 358 (361)
++..+|.||++..++.++++|||. ||+.|+..|... ..+||+||..|.. ++.|+..+
T Consensus 16 ~~~~~CpICld~~~dPVvT~CGH~-FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is~~~LvPiygrg 90 (193)
T PLN03208 16 GGDFDCNICLDQVRDPVVTLCGHL-FCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVSEATLVPIYGRG 90 (193)
T ss_pred CCccCCccCCCcCCCcEEcCCCch-hHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCChhcEEEeeccC
Confidence 345789999999999999999999 999999998642 2479999999964 66665443
No 7
>PHA02929 N1R/p28-like protein; Provisional
Probab=98.81 E-value=3.4e-09 Score=100.62 Aligned_cols=54 Identities=30% Similarity=0.827 Sum_probs=45.6
Q ss_pred CCCeeeecccCCCC--------eEEeCCCCcccCHHHHHHHhccCCCCccccccccceEEEEc
Q 046132 302 PGKECVICLSEPRD--------TTVLPCRHMCMCSGCAKVLRFQTNRCPICRQPVERLLEIKV 356 (361)
Q Consensus 302 ~~~eCvICl~~~~d--------~vlLPCgH~cfC~~Ca~~l~~qs~~CPICR~~I~~ll~I~v 356 (361)
.+.+|.||++...+ .++.+|+|. ||..|+..|.....+||+||..+..+++-++
T Consensus 173 ~~~eC~ICle~~~~~~~~~~~~~vl~~C~H~-FC~~CI~~Wl~~~~tCPlCR~~~~~v~~~r~ 234 (238)
T PHA02929 173 KDKECAICMEKVYDKEIKNMYFGILSNCNHV-FCIECIDIWKKEKNTCPVCRTPFISVIKSRF 234 (238)
T ss_pred CCCCCccCCcccccCccccccceecCCCCCc-ccHHHHHHHHhcCCCCCCCCCEeeEEeeeee
Confidence 45789999997544 356789999 9999999999888999999999998876653
No 8
>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.79 E-value=3.1e-09 Score=102.27 Aligned_cols=51 Identities=24% Similarity=0.737 Sum_probs=46.2
Q ss_pred CCCCeeeecccCCCCeEEeCCCCcccCHHHHHHHhccCCCCccccccccceE
Q 046132 301 DPGKECVICLSEPRDTTVLPCRHMCMCSGCAKVLRFQTNRCPICRQPVERLL 352 (361)
Q Consensus 301 ~~~~eCvICl~~~~d~vlLPCgH~cfC~~Ca~~l~~qs~~CPICR~~I~~ll 352 (361)
+....|.+||+...+...+||||. ||++|+..|...+..||+||..+...-
T Consensus 237 ~a~~kC~LCLe~~~~pSaTpCGHi-FCWsCI~~w~~ek~eCPlCR~~~~psk 287 (293)
T KOG0317|consen 237 EATRKCSLCLENRSNPSATPCGHI-FCWSCILEWCSEKAECPLCREKFQPSK 287 (293)
T ss_pred CCCCceEEEecCCCCCCcCcCcch-HHHHHHHHHHccccCCCcccccCCCcc
Confidence 445789999999999999999999 999999999998899999999986543
No 9
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=98.74 E-value=3.5e-09 Score=74.69 Aligned_cols=40 Identities=43% Similarity=0.933 Sum_probs=35.2
Q ss_pred eeeecccCC---CCeEEeCCCCcccCHHHHHHHhccCCCCcccc
Q 046132 305 ECVICLSEP---RDTTVLPCRHMCMCSGCAKVLRFQTNRCPICR 345 (361)
Q Consensus 305 eCvICl~~~---~d~vlLPCgH~cfC~~Ca~~l~~qs~~CPICR 345 (361)
+|.||++.. ...+.++|+|. ||.+|+..|...+.+||+||
T Consensus 2 ~C~IC~~~~~~~~~~~~l~C~H~-fh~~Ci~~~~~~~~~CP~CR 44 (44)
T PF13639_consen 2 ECPICLEEFEDGEKVVKLPCGHV-FHRSCIKEWLKRNNSCPVCR 44 (44)
T ss_dssp CETTTTCBHHTTSCEEEETTSEE-EEHHHHHHHHHHSSB-TTTH
T ss_pred CCcCCChhhcCCCeEEEccCCCe-eCHHHHHHHHHhCCcCCccC
Confidence 699999865 46778999999 99999999998889999998
No 10
>KOG1571 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.70 E-value=4.9e-09 Score=103.59 Aligned_cols=53 Identities=36% Similarity=0.894 Sum_probs=46.7
Q ss_pred CCCCCeeeecccCCCCeEEeCCCCcccCHHHHHHHhccCCCCccccccccceEEEEc
Q 046132 300 NDPGKECVICLSEPRDTTVLPCRHMCMCSGCAKVLRFQTNRCPICRQPVERLLEIKV 356 (361)
Q Consensus 300 ~~~~~eCvICl~~~~d~vlLPCgH~cfC~~Ca~~l~~qs~~CPICR~~I~~ll~I~v 356 (361)
......|+||++++.+++++||||+|.|..|.+.+. .||+||+.|..+++++.
T Consensus 302 ~~~p~lcVVcl~e~~~~~fvpcGh~ccct~cs~~l~----~CPvCR~rI~~~~k~y~ 354 (355)
T KOG1571|consen 302 LPQPDLCVVCLDEPKSAVFVPCGHVCCCTLCSKHLP----QCPVCRQRIRLVRKRYR 354 (355)
T ss_pred cCCCCceEEecCCccceeeecCCcEEEchHHHhhCC----CCchhHHHHHHHHHHhc
Confidence 344578999999999999999999999999999885 69999999998877653
No 11
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=98.68 E-value=1e-08 Score=70.68 Aligned_cols=38 Identities=42% Similarity=1.045 Sum_probs=33.5
Q ss_pred eeecccCCCCe-EEeCCCCcccCHHHHHHHhccCCCCccc
Q 046132 306 CVICLSEPRDT-TVLPCRHMCMCSGCAKVLRFQTNRCPIC 344 (361)
Q Consensus 306 CvICl~~~~d~-vlLPCgH~cfC~~Ca~~l~~qs~~CPIC 344 (361)
|.||++..+++ ++++|||+ ||.+|+.+|.....+||+|
T Consensus 1 C~iC~~~~~~~~~~~~CGH~-fC~~C~~~~~~~~~~CP~C 39 (39)
T PF13923_consen 1 CPICLDELRDPVVVTPCGHS-FCKECIEKYLEKNPKCPVC 39 (39)
T ss_dssp ETTTTSB-SSEEEECTTSEE-EEHHHHHHHHHCTSB-TTT
T ss_pred CCCCCCcccCcCEECCCCCc-hhHHHHHHHHHCcCCCcCC
Confidence 89999999999 68999999 9999999988888899998
No 12
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A.
Probab=98.49 E-value=9.7e-08 Score=67.36 Aligned_cols=38 Identities=39% Similarity=0.917 Sum_probs=30.3
Q ss_pred eeecccCCCCeEEeCCCCcccCHHHHHHHhccC----CCCccc
Q 046132 306 CVICLSEPRDTTVLPCRHMCMCSGCAKVLRFQT----NRCPIC 344 (361)
Q Consensus 306 CvICl~~~~d~vlLPCgH~cfC~~Ca~~l~~qs----~~CPIC 344 (361)
|.||++-.++++.|+|||. ||..|+.+|+... ..||+|
T Consensus 1 CpiC~~~~~~Pv~l~CGH~-FC~~Cl~~~~~~~~~~~~~CP~C 42 (42)
T PF15227_consen 1 CPICLDLFKDPVSLPCGHS-FCRSCLERLWKEPSGSGFSCPEC 42 (42)
T ss_dssp ETTTTSB-SSEEE-SSSSE-EEHHHHHHHHCCSSSST---SSS
T ss_pred CCccchhhCCccccCCcCH-HHHHHHHHHHHccCCcCCCCcCC
Confidence 8899999999999999999 9999999987654 359988
No 13
>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.48 E-value=7.6e-08 Score=87.18 Aligned_cols=53 Identities=32% Similarity=0.727 Sum_probs=43.4
Q ss_pred CCeeeecccCCCCeE--EeCCCCcccCHHHHHHHhccCCCCccccccccc--eEEEEc
Q 046132 303 GKECVICLSEPRDTT--VLPCRHMCMCSGCAKVLRFQTNRCPICRQPVER--LLEIKV 356 (361)
Q Consensus 303 ~~eCvICl~~~~d~v--lLPCgH~cfC~~Ca~~l~~qs~~CPICR~~I~~--ll~I~v 356 (361)
-..|.|||+....-+ -.-|||+ ||..|++.++....+||+||..|.. +.+|++
T Consensus 131 ~~~CPiCl~~~sek~~vsTkCGHv-FC~~Cik~alk~~~~CP~C~kkIt~k~~~rI~L 187 (187)
T KOG0320|consen 131 TYKCPICLDSVSEKVPVSTKCGHV-FCSQCIKDALKNTNKCPTCRKKITHKQFHRIYL 187 (187)
T ss_pred ccCCCceecchhhccccccccchh-HHHHHHHHHHHhCCCCCCcccccchhhheeccC
Confidence 367999999776655 3679999 9999999999999999999987765 455553
No 14
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=98.47 E-value=1.3e-07 Score=64.72 Aligned_cols=43 Identities=47% Similarity=1.105 Sum_probs=35.7
Q ss_pred eeeecccCCCCeEEe-CCCCcccCHHHHHHHhcc-CCCCccccccc
Q 046132 305 ECVICLSEPRDTTVL-PCRHMCMCSGCAKVLRFQ-TNRCPICRQPV 348 (361)
Q Consensus 305 eCvICl~~~~d~vlL-PCgH~cfC~~Ca~~l~~q-s~~CPICR~~I 348 (361)
+|.||++...+.+.+ +|+|. ||..|+..|..+ ..+||+||..+
T Consensus 1 ~C~iC~~~~~~~~~~~~C~H~-~c~~C~~~~~~~~~~~Cp~C~~~~ 45 (45)
T cd00162 1 ECPICLEEFREPVVLLPCGHV-FCRSCIDKWLKSGKNTCPLCRTPI 45 (45)
T ss_pred CCCcCchhhhCceEecCCCCh-hcHHHHHHHHHhCcCCCCCCCCcC
Confidence 499999998555544 59999 999999998876 67899999764
No 15
>PHA02926 zinc finger-like protein; Provisional
Probab=98.42 E-value=1.1e-07 Score=89.07 Aligned_cols=50 Identities=28% Similarity=0.666 Sum_probs=39.4
Q ss_pred CCCeeeecccCC---------CCeEEeCCCCcccCHHHHHHHhccC------CCCccccccccceE
Q 046132 302 PGKECVICLSEP---------RDTTVLPCRHMCMCSGCAKVLRFQT------NRCPICRQPVERLL 352 (361)
Q Consensus 302 ~~~eCvICl~~~---------~d~vlLPCgH~cfC~~Ca~~l~~qs------~~CPICR~~I~~ll 352 (361)
.+.+|.|||+.. +-.++.+|+|. ||..|+..|+... ..||+||..+..+.
T Consensus 169 kE~eCgICmE~I~eK~~~~eRrFGIL~~CnHs-FCl~CIr~Wr~~r~~~~~~rsCPiCR~~f~~I~ 233 (242)
T PHA02926 169 KEKECGICYEVVYSKRLENDRYFGLLDSCNHI-FCITCINIWHRTRRETGASDNCPICRTRFRNIT 233 (242)
T ss_pred CCCCCccCccccccccccccccccccCCCCch-HHHHHHHHHHHhccccCcCCcCCCCcceeeeec
Confidence 347899999853 22567799999 9999999999742 45999999887553
No 16
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=98.36 E-value=2.7e-07 Score=65.36 Aligned_cols=41 Identities=37% Similarity=0.971 Sum_probs=35.0
Q ss_pred eeeecccCC---CCeEEeCCCCcccCHHHHHHHhccCCCCccccc
Q 046132 305 ECVICLSEP---RDTTVLPCRHMCMCSGCAKVLRFQTNRCPICRQ 346 (361)
Q Consensus 305 eCvICl~~~---~d~vlLPCgH~cfC~~Ca~~l~~qs~~CPICR~ 346 (361)
+|.||++.. +...+++|||. ||..|+..+......||+||+
T Consensus 1 ~C~~C~~~~~~~~~~~l~~CgH~-~C~~C~~~~~~~~~~CP~C~k 44 (44)
T PF14634_consen 1 HCNICFEKYSEERRPRLTSCGHI-FCEKCLKKLKGKSVKCPICRK 44 (44)
T ss_pred CCcCcCccccCCCCeEEcccCCH-HHHHHHHhhcCCCCCCcCCCC
Confidence 488999877 45789999999 999999998755678999985
No 17
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=98.33 E-value=4.3e-07 Score=59.93 Aligned_cols=38 Identities=47% Similarity=1.100 Sum_probs=34.2
Q ss_pred eeecccCCCCeEEeCCCCcccCHHHHHHHhc-cCCCCccc
Q 046132 306 CVICLSEPRDTTVLPCRHMCMCSGCAKVLRF-QTNRCPIC 344 (361)
Q Consensus 306 CvICl~~~~d~vlLPCgH~cfC~~Ca~~l~~-qs~~CPIC 344 (361)
|.||++..++.++++|+|. ||..|++.|.. ...+||+|
T Consensus 1 C~iC~~~~~~~~~~~C~H~-~c~~C~~~~~~~~~~~CP~C 39 (39)
T smart00184 1 CPICLEELKDPVVLPCGHT-FCRSCIRKWLKSGNNTCPIC 39 (39)
T ss_pred CCcCccCCCCcEEecCCCh-HHHHHHHHHHHhCcCCCCCC
Confidence 7899999999999999999 99999999876 45679987
No 18
>KOG1100 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.33 E-value=1.6e-07 Score=87.76 Aligned_cols=46 Identities=39% Similarity=1.002 Sum_probs=42.0
Q ss_pred eeecccCCCCeEEeCCCCcccCHHHHHHHhccCCCCccccccccceEEEE
Q 046132 306 CVICLSEPRDTTVLPCRHMCMCSGCAKVLRFQTNRCPICRQPVERLLEIK 355 (361)
Q Consensus 306 CvICl~~~~d~vlLPCgH~cfC~~Ca~~l~~qs~~CPICR~~I~~ll~I~ 355 (361)
|.+|.++...++++||+|+|+|..|...+ ..||+|+..+.+.++++
T Consensus 161 Cr~C~~~~~~VlllPCrHl~lC~~C~~~~----~~CPiC~~~~~s~~~v~ 206 (207)
T KOG1100|consen 161 CRKCGEREATVLLLPCRHLCLCGICDESL----RICPICRSPKTSSVEVN 206 (207)
T ss_pred ceecCcCCceEEeecccceEecccccccC----ccCCCCcChhhceeecc
Confidence 99999999999999999999999999864 37999999999888765
No 19
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....
Probab=98.31 E-value=3.5e-07 Score=63.19 Aligned_cols=38 Identities=37% Similarity=0.970 Sum_probs=34.4
Q ss_pred eeecccCCCCeE-EeCCCCcccCHHHHHHHhc--cCCCCccc
Q 046132 306 CVICLSEPRDTT-VLPCRHMCMCSGCAKVLRF--QTNRCPIC 344 (361)
Q Consensus 306 CvICl~~~~d~v-lLPCgH~cfC~~Ca~~l~~--qs~~CPIC 344 (361)
|.||++...+.+ +++|||. ||..|+.+|+. ....||+|
T Consensus 1 C~iC~~~~~~~~~~~~C~H~-fC~~C~~~~~~~~~~~~CP~C 41 (41)
T PF00097_consen 1 CPICLEPFEDPVILLPCGHS-FCRDCLRKWLENSGSVKCPLC 41 (41)
T ss_dssp ETTTSSBCSSEEEETTTSEE-EEHHHHHHHHHHTSSSBTTTT
T ss_pred CCcCCccccCCCEEecCCCc-chHHHHHHHHHhcCCccCCcC
Confidence 889999999998 9999999 99999999877 45679998
No 20
>TIGR00599 rad18 DNA repair protein rad18. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.31 E-value=3.4e-07 Score=92.84 Aligned_cols=52 Identities=25% Similarity=0.533 Sum_probs=45.6
Q ss_pred CCCCCCCeeeecccCCCCeEEeCCCCcccCHHHHHHHhccCCCCccccccccc
Q 046132 298 DANDPGKECVICLSEPRDTTVLPCRHMCMCSGCAKVLRFQTNRCPICRQPVER 350 (361)
Q Consensus 298 ~~~~~~~eCvICl~~~~d~vlLPCgH~cfC~~Ca~~l~~qs~~CPICR~~I~~ 350 (361)
+..+....|.||++...+.++++|+|. ||..|+..|......||+||..+..
T Consensus 21 ~~Le~~l~C~IC~d~~~~PvitpCgH~-FCs~CI~~~l~~~~~CP~Cr~~~~~ 72 (397)
T TIGR00599 21 YPLDTSLRCHICKDFFDVPVLTSCSHT-FCSLCIRRCLSNQPKCPLCRAEDQE 72 (397)
T ss_pred cccccccCCCcCchhhhCccCCCCCCc-hhHHHHHHHHhCCCCCCCCCCcccc
Confidence 344566899999999999999999999 9999999988777789999998864
No 21
>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.29 E-value=5.1e-07 Score=87.77 Aligned_cols=49 Identities=39% Similarity=0.895 Sum_probs=41.5
Q ss_pred CCCCCeeeecccCCCC---eEEeCCCCcccCHHHHHHHhc-cCCCCcccccccc
Q 046132 300 NDPGKECVICLSEPRD---TTVLPCRHMCMCSGCAKVLRF-QTNRCPICRQPVE 349 (361)
Q Consensus 300 ~~~~~eCvICl~~~~d---~vlLPCgH~cfC~~Ca~~l~~-qs~~CPICR~~I~ 349 (361)
.+.+-+|+|||+.... .++|||.|. |...|+++|.. -+.+||+||+++.
T Consensus 320 a~~GveCaICms~fiK~d~~~vlPC~H~-FH~~Cv~kW~~~y~~~CPvCrt~iP 372 (374)
T COG5540 320 ADKGVECAICMSNFIKNDRLRVLPCDHR-FHVGCVDKWLLGYSNKCPVCRTAIP 372 (374)
T ss_pred cCCCceEEEEhhhhcccceEEEeccCce-echhHHHHHHhhhcccCCccCCCCC
Confidence 4567899999996542 678999999 99999999987 5689999999874
No 22
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=98.29 E-value=6.6e-07 Score=66.90 Aligned_cols=46 Identities=20% Similarity=0.306 Sum_probs=41.9
Q ss_pred CeeeecccCCCCeEEeCCCCcccCHHHHHHHhccCCCCccccccccc
Q 046132 304 KECVICLSEPRDTTVLPCRHMCMCSGCAKVLRFQTNRCPICRQPVER 350 (361)
Q Consensus 304 ~eCvICl~~~~d~vlLPCgH~cfC~~Ca~~l~~qs~~CPICR~~I~~ 350 (361)
..|.||++..++.++++|||. ||.+|+..|.....+||+|+..+..
T Consensus 2 ~~Cpi~~~~~~~Pv~~~~G~v-~~~~~i~~~~~~~~~cP~~~~~~~~ 47 (63)
T smart00504 2 FLCPISLEVMKDPVILPSGQT-YERRAIEKWLLSHGTDPVTGQPLTH 47 (63)
T ss_pred cCCcCCCCcCCCCEECCCCCE-EeHHHHHHHHHHCCCCCCCcCCCCh
Confidence 469999999999999999999 9999999988777889999998843
No 23
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.21 E-value=8.6e-07 Score=88.23 Aligned_cols=48 Identities=29% Similarity=0.729 Sum_probs=40.8
Q ss_pred CeeeecccCCCC---eEEeCCCCcccCHHHHHHHhccCCC-CccccccccceE
Q 046132 304 KECVICLSEPRD---TTVLPCRHMCMCSGCAKVLRFQTNR-CPICRQPVERLL 352 (361)
Q Consensus 304 ~eCvICl~~~~d---~vlLPCgH~cfC~~Ca~~l~~qs~~-CPICR~~I~~ll 352 (361)
..|+||++..+. ..+|||+|. |+..|++.|..+..+ ||+|++.+..-.
T Consensus 230 ~~CaIClEdY~~GdklRiLPC~H~-FH~~CIDpWL~~~r~~CPvCK~di~~~~ 281 (348)
T KOG4628|consen 230 DTCAICLEDYEKGDKLRILPCSHK-FHVNCIDPWLTQTRTFCPVCKRDIRTDS 281 (348)
T ss_pred ceEEEeecccccCCeeeEecCCCc-hhhccchhhHhhcCccCCCCCCcCCCCC
Confidence 599999997765 468999999 999999999988744 999999886543
No 24
>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
Probab=98.16 E-value=1e-06 Score=87.65 Aligned_cols=48 Identities=35% Similarity=0.838 Sum_probs=40.6
Q ss_pred CCCCCeeeecccCC-------------CCeEEeCCCCcccCHHHHHHHhccCCCCccccccc
Q 046132 300 NDPGKECVICLSEP-------------RDTTVLPCRHMCMCSGCAKVLRFQTNRCPICRQPV 348 (361)
Q Consensus 300 ~~~~~eCvICl~~~-------------~d~vlLPCgH~cfC~~Ca~~l~~qs~~CPICR~~I 348 (361)
..++..|.|||++. +.+--|||||. +...|++.|...+.+|||||.++
T Consensus 284 ~n~D~~C~ICmde~~h~~~~~~~~~~~~~pKrLpCGHi-lHl~CLknW~ERqQTCPICr~p~ 344 (491)
T COG5243 284 TNSDRTCTICMDEMFHPDHEPLPRGLDMTPKRLPCGHI-LHLHCLKNWLERQQTCPICRRPV 344 (491)
T ss_pred cCCCCeEEEecccccCCCCccCcccccCCcccccccce-eeHHHHHHHHHhccCCCcccCcc
Confidence 34568999999972 22357899998 99999999999999999999995
No 25
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=98.15 E-value=1.7e-06 Score=67.92 Aligned_cols=40 Identities=33% Similarity=0.695 Sum_probs=33.1
Q ss_pred eeeecccCC-------------CCeEEeCCCCcccCHHHHHHHhccCCCCcccc
Q 046132 305 ECVICLSEP-------------RDTTVLPCRHMCMCSGCAKVLRFQTNRCPICR 345 (361)
Q Consensus 305 eCvICl~~~-------------~d~vlLPCgH~cfC~~Ca~~l~~qs~~CPICR 345 (361)
.|.||++.. ...++.+|||. |+..|+..|.....+||+||
T Consensus 21 ~C~IC~~~l~~~~~~~~~~~~~~~i~~~~C~H~-FH~~Ci~~Wl~~~~~CP~CR 73 (73)
T PF12678_consen 21 NCAICREPLEDPCPECQAPQDECPIVWGPCGHI-FHFHCISQWLKQNNTCPLCR 73 (73)
T ss_dssp BETTTTSBTTSTTCCHHHCTTTS-EEEETTSEE-EEHHHHHHHHTTSSB-TTSS
T ss_pred cccccChhhhChhhhhcCCccccceEecccCCC-EEHHHHHHHHhcCCcCCCCC
Confidence 499999866 23456789999 99999999999889999998
No 26
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.13 E-value=1.1e-06 Score=83.90 Aligned_cols=49 Identities=31% Similarity=0.776 Sum_probs=42.2
Q ss_pred CCCCeeeecccCCCCeEEeCCCCcccCHHHHHH-HhccCC-CCccccccccc
Q 046132 301 DPGKECVICLSEPRDTTVLPCRHMCMCSGCAKV-LRFQTN-RCPICRQPVER 350 (361)
Q Consensus 301 ~~~~eCvICl~~~~d~vlLPCgH~cfC~~Ca~~-l~~qs~-~CPICR~~I~~ 350 (361)
..+..|.||++...+...++|||+ ||..|+-. |..++. .||+||+.+.-
T Consensus 213 ~~d~kC~lC~e~~~~ps~t~CgHl-FC~~Cl~~~~t~~k~~~CplCRak~~p 263 (271)
T COG5574 213 LADYKCFLCLEEPEVPSCTPCGHL-FCLSCLLISWTKKKYEFCPLCRAKVYP 263 (271)
T ss_pred ccccceeeeecccCCcccccccch-hhHHHHHHHHHhhccccCchhhhhccc
Confidence 346789999999999999999999 99999998 776654 49999997743
No 27
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=98.12 E-value=8.3e-07 Score=88.94 Aligned_cols=53 Identities=25% Similarity=0.696 Sum_probs=46.5
Q ss_pred CCeeeecccCCCCeEEeCCCCcccCHHHHHHHhcc--CCCCccccccccceEEEEc
Q 046132 303 GKECVICLSEPRDTTVLPCRHMCMCSGCAKVLRFQ--TNRCPICRQPVERLLEIKV 356 (361)
Q Consensus 303 ~~eCvICl~~~~d~vlLPCgH~cfC~~Ca~~l~~q--s~~CPICR~~I~~ll~I~v 356 (361)
-.+|.||-++.+|+.+-||||+ +|..|+..|... ...||.||..|.+.-.|.|
T Consensus 369 FeLCKICaendKdvkIEPCGHL-lCt~CLa~WQ~sd~gq~CPFCRcEIKGte~vii 423 (563)
T KOG1785|consen 369 FELCKICAENDKDVKIEPCGHL-LCTSCLAAWQDSDEGQTCPFCRCEIKGTEPVII 423 (563)
T ss_pred HHHHHHhhccCCCcccccccch-HHHHHHHhhcccCCCCCCCceeeEeccccceee
Confidence 3589999999999999999999 999999999854 4789999999988766654
No 28
>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.10 E-value=1.7e-06 Score=89.02 Aligned_cols=55 Identities=29% Similarity=0.683 Sum_probs=46.2
Q ss_pred CCeeeecccCCCCeEEeCCCCcccCHHHHHHHhccC-----CCCccccccccc--eEEEEcCC
Q 046132 303 GKECVICLSEPRDTTVLPCRHMCMCSGCAKVLRFQT-----NRCPICRQPVER--LLEIKVNG 358 (361)
Q Consensus 303 ~~eCvICl~~~~d~vlLPCgH~cfC~~Ca~~l~~qs-----~~CPICR~~I~~--ll~I~v~~ 358 (361)
+..|.|||+.+..++++.|||. ||..|+-..+..+ ..||+||..|.. +..|+..+
T Consensus 186 ~~~CPICL~~~~~p~~t~CGHi-FC~~CiLqy~~~s~~~~~~~CPiC~s~I~~kdl~pv~~e~ 247 (513)
T KOG2164|consen 186 DMQCPICLEPPSVPVRTNCGHI-FCGPCILQYWNYSAIKGPCSCPICRSTITLKDLLPVFIED 247 (513)
T ss_pred CCcCCcccCCCCcccccccCce-eeHHHHHHHHhhhcccCCccCCchhhhccccceeeeeecc
Confidence 5789999999999999999999 9999999855443 579999999977 76666543
No 29
>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.
Probab=97.96 E-value=3.6e-06 Score=59.85 Aligned_cols=31 Identities=35% Similarity=0.847 Sum_probs=20.8
Q ss_pred eeecccCCCC----eEEeCCCCcccCHHHHHHHhccC
Q 046132 306 CVICLSEPRD----TTVLPCRHMCMCSGCAKVLRFQT 338 (361)
Q Consensus 306 CvICl~~~~d----~vlLPCgH~cfC~~Ca~~l~~qs 338 (361)
|.||.+ ..+ +++|+|||. ||.+|++.|...+
T Consensus 1 CpIc~e-~~~~~n~P~~L~CGH~-~c~~cl~~l~~~~ 35 (43)
T PF13445_consen 1 CPICKE-FSTEENPPMVLPCGHV-FCKDCLQKLSKKS 35 (43)
T ss_dssp -TTT-----TTSS-EEE-SSS-E-EEHHHHHHHHHH-
T ss_pred CCcccc-ccCCCCCCEEEeCccH-HHHHHHHHHHhcC
Confidence 889998 667 899999999 9999999987643
No 30
>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.95 E-value=2.5e-06 Score=78.44 Aligned_cols=46 Identities=33% Similarity=0.730 Sum_probs=39.9
Q ss_pred CCCCCeeeecccCCCCeEEeCCCCcccCHHHHHHHhccCCCCccccc
Q 046132 300 NDPGKECVICLSEPRDTTVLPCRHMCMCSGCAKVLRFQTNRCPICRQ 346 (361)
Q Consensus 300 ~~~~~eCvICl~~~~d~vlLPCgH~cfC~~Ca~~l~~qs~~CPICR~ 346 (361)
..+...|.||++..+++++++|+|. ||..|+..++.....||.||.
T Consensus 10 ~~~~~~C~iC~~~~~~p~~l~C~H~-~c~~C~~~~~~~~~~Cp~cr~ 55 (386)
T KOG2177|consen 10 LQEELTCPICLEYFREPVLLPCGHN-FCRACLTRSWEGPLSCPVCRP 55 (386)
T ss_pred ccccccChhhHHHhhcCccccccch-HhHHHHHHhcCCCcCCcccCC
Confidence 3456789999999999999999999 999999997754468999994
No 31
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.93 E-value=3.7e-06 Score=88.60 Aligned_cols=48 Identities=29% Similarity=0.693 Sum_probs=42.7
Q ss_pred CCCCeeeecccCCCC-----eEEeCCCCcccCHHHHHHHhccCCCCcccccccc
Q 046132 301 DPGKECVICLSEPRD-----TTVLPCRHMCMCSGCAKVLRFQTNRCPICRQPVE 349 (361)
Q Consensus 301 ~~~~eCvICl~~~~d-----~vlLPCgH~cfC~~Ca~~l~~qs~~CPICR~~I~ 349 (361)
..+..|.||++.... +..|+|+|. ||..|++.|..+..+||+||..+.
T Consensus 289 ~~~~~C~IC~e~l~~~~~~~~~rL~C~Hi-fh~~CL~~W~er~qtCP~CR~~~~ 341 (543)
T KOG0802|consen 289 LSDELCIICLEELHSGHNITPKRLPCGHI-FHDSCLRSWFERQQTCPTCRTVLY 341 (543)
T ss_pred hcCCeeeeechhhccccccccceeecccc-hHHHHHHHHHHHhCcCCcchhhhh
Confidence 446789999998877 789999999 999999999999999999999443
No 32
>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]
Probab=97.78 E-value=5.6e-06 Score=81.69 Aligned_cols=49 Identities=29% Similarity=0.600 Sum_probs=44.2
Q ss_pred CCCCeeeecccCCCCeEEeCCCCcccCHHHHHHHhccCCCCccccccccc
Q 046132 301 DPGKECVICLSEPRDTTVLPCRHMCMCSGCAKVLRFQTNRCPICRQPVER 350 (361)
Q Consensus 301 ~~~~eCvICl~~~~d~vlLPCgH~cfC~~Ca~~l~~qs~~CPICR~~I~~ 350 (361)
++-..|-||++-++.+++.||+|. ||.-|++........||.|+..+..
T Consensus 21 D~lLRC~IC~eyf~ip~itpCsHt-fCSlCIR~~L~~~p~CP~C~~~~~E 69 (442)
T KOG0287|consen 21 DDLLRCGICFEYFNIPMITPCSHT-FCSLCIRKFLSYKPQCPTCCVTVTE 69 (442)
T ss_pred HHHHHHhHHHHHhcCceeccccch-HHHHHHHHHhccCCCCCceecccch
Confidence 445689999999999999999999 9999999988888999999998864
No 33
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]
Probab=97.76 E-value=8.3e-06 Score=79.09 Aligned_cols=49 Identities=27% Similarity=0.484 Sum_probs=43.9
Q ss_pred CCCCeeeecccCCCCeEEeCCCCcccCHHHHHHHhccCCCCccccccccc
Q 046132 301 DPGKECVICLSEPRDTTVLPCRHMCMCSGCAKVLRFQTNRCPICRQPVER 350 (361)
Q Consensus 301 ~~~~eCvICl~~~~d~vlLPCgH~cfC~~Ca~~l~~qs~~CPICR~~I~~ 350 (361)
+....|-||-+..+..++.+|||. ||+-|++........||+||.....
T Consensus 23 Ds~lrC~IC~~~i~ip~~TtCgHt-FCslCIR~hL~~qp~CP~Cr~~~~e 71 (391)
T COG5432 23 DSMLRCRICDCRISIPCETTCGHT-FCSLCIRRHLGTQPFCPVCREDPCE 71 (391)
T ss_pred hhHHHhhhhhheeecceecccccc-hhHHHHHHHhcCCCCCccccccHHh
Confidence 445789999999999999999999 9999999988788899999998754
No 34
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=97.73 E-value=6.4e-06 Score=88.24 Aligned_cols=54 Identities=20% Similarity=0.623 Sum_probs=44.7
Q ss_pred CCCeeeecccCCCCeEEeCCCCcccCHHHHHHH-hccCCCCccccccccc--eEEEEc
Q 046132 302 PGKECVICLSEPRDTTVLPCRHMCMCSGCAKVL-RFQTNRCPICRQPVER--LLEIKV 356 (361)
Q Consensus 302 ~~~eCvICl~~~~d~vlLPCgH~cfC~~Ca~~l-~~qs~~CPICR~~I~~--ll~I~v 356 (361)
.-..|.+|.++.+|+++.-|+|+ ||..|++.. .....+||.|-+.|.. +.+|++
T Consensus 642 ~~LkCs~Cn~R~Kd~vI~kC~H~-FC~~Cvq~r~etRqRKCP~Cn~aFganDv~~I~l 698 (698)
T KOG0978|consen 642 ELLKCSVCNTRWKDAVITKCGHV-FCEECVQTRYETRQRKCPKCNAAFGANDVHRIHL 698 (698)
T ss_pred hceeCCCccCchhhHHHHhcchH-HHHHHHHHHHHHhcCCCCCCCCCCCcccccccCC
Confidence 34689999999999999999999 999999983 3446799999999964 455553
No 35
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.70 E-value=1.4e-05 Score=77.81 Aligned_cols=49 Identities=31% Similarity=0.641 Sum_probs=41.9
Q ss_pred CCCeeeecccCCCCeEEeCCCCcccCHHHHHHHh-ccCCCCccccccccce
Q 046132 302 PGKECVICLSEPRDTTVLPCRHMCMCSGCAKVLR-FQTNRCPICRQPVERL 351 (361)
Q Consensus 302 ~~~eCvICl~~~~d~vlLPCgH~cfC~~Ca~~l~-~qs~~CPICR~~I~~l 351 (361)
...+|.||+....-.+.|+|+|. ||+.|++-.. ..+..|++||.+|.+.
T Consensus 6 ~~~eC~IC~nt~n~Pv~l~C~Hk-FCyiCiKGsy~ndk~~CavCR~pids~ 55 (324)
T KOG0824|consen 6 KKKECLICYNTGNCPVNLYCFHK-FCYICIKGSYKNDKKTCAVCRFPIDST 55 (324)
T ss_pred cCCcceeeeccCCcCccccccch-hhhhhhcchhhcCCCCCceecCCCCcc
Confidence 35789999999999999999999 9999999743 3456699999999874
No 36
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=97.69 E-value=2.5e-05 Score=61.08 Aligned_cols=47 Identities=26% Similarity=0.277 Sum_probs=38.6
Q ss_pred CCeeeecccCCCCeEEeCCCCcccCHHHHHHHhcc-CCCCccccccccc
Q 046132 303 GKECVICLSEPRDTTVLPCRHMCMCSGCAKVLRFQ-TNRCPICRQPVER 350 (361)
Q Consensus 303 ~~eCvICl~~~~d~vlLPCgH~cfC~~Ca~~l~~q-s~~CPICR~~I~~ 350 (361)
...|.||.+-.+|+++++|||. |+..|+..|..+ ...||+|+..+..
T Consensus 4 ~f~CpIt~~lM~dPVi~~~G~t-yer~~I~~~l~~~~~~~P~t~~~l~~ 51 (73)
T PF04564_consen 4 EFLCPITGELMRDPVILPSGHT-YERSAIERWLEQNGGTDPFTRQPLSE 51 (73)
T ss_dssp GGB-TTTSSB-SSEEEETTSEE-EEHHHHHHHHCTTSSB-TTT-SB-SG
T ss_pred ccCCcCcCcHhhCceeCCcCCE-EcHHHHHHHHHcCCCCCCCCCCcCCc
Confidence 4689999999999999999999 999999999888 6889999998865
No 37
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=97.67 E-value=4e-05 Score=75.96 Aligned_cols=53 Identities=30% Similarity=0.826 Sum_probs=45.1
Q ss_pred CCCCCCeeeecccCCCCeEEeCCCCcccCHHHHHHHh--ccCCCCccccccccceE
Q 046132 299 ANDPGKECVICLSEPRDTTVLPCRHMCMCSGCAKVLR--FQTNRCPICRQPVERLL 352 (361)
Q Consensus 299 ~~~~~~eCvICl~~~~d~vlLPCgH~cfC~~Ca~~l~--~qs~~CPICR~~I~~ll 352 (361)
.+++...|+||-....-..++||+|. +|..|+-+++ +.++.|++||+.-+.++
T Consensus 57 tDEen~~C~ICA~~~TYs~~~PC~H~-~CH~Ca~RlRALY~~K~C~~CrTE~e~V~ 111 (493)
T COG5236 57 TDEENMNCQICAGSTTYSARYPCGHQ-ICHACAVRLRALYMQKGCPLCRTETEAVV 111 (493)
T ss_pred cccccceeEEecCCceEEEeccCCch-HHHHHHHHHHHHHhccCCCccccccceEE
Confidence 34556789999999999999999999 9999998865 45688999999887765
No 38
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.53 E-value=4.2e-05 Score=76.47 Aligned_cols=51 Identities=31% Similarity=0.750 Sum_probs=41.4
Q ss_pred CCCCeeeecccCCCCeE-----E---eCCCCcccCHHHHHHHh--cc-----CCCCccccccccceE
Q 046132 301 DPGKECVICLSEPRDTT-----V---LPCRHMCMCSGCAKVLR--FQ-----TNRCPICRQPVERLL 352 (361)
Q Consensus 301 ~~~~eCvICl~~~~d~v-----l---LPCgH~cfC~~Ca~~l~--~q-----s~~CPICR~~I~~ll 352 (361)
..+++|.|||+...+.. + .+|.|. ||..|+..|+ .+ +..||+||.....+.
T Consensus 159 s~~k~CGICme~i~ek~~~~~rfgilpnC~H~-~Cl~Cir~wr~~~q~~~~~sksCP~CRv~s~~v~ 224 (344)
T KOG1039|consen 159 SSEKECGICMETINEKAASERRFGILPNCNHS-FCLNCIRKWRQATQFESKTSKSCPFCRVPSSFVN 224 (344)
T ss_pred cccccceehhhhccccchhhhhcccCCCcchh-hhhcHhHhhhhhhccccccccCCCcccCcccccc
Confidence 34678999999766655 3 669999 9999999999 45 478999999887653
No 39
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.47 E-value=8.5e-05 Score=73.13 Aligned_cols=46 Identities=26% Similarity=0.729 Sum_probs=34.3
Q ss_pred CeeeecccC---CCCe--EEeCCCCcccCHHHHHHHhc-cCCCCccccccccc
Q 046132 304 KECVICLSE---PRDT--TVLPCRHMCMCSGCAKVLRF-QTNRCPICRQPVER 350 (361)
Q Consensus 304 ~eCvICl~~---~~d~--vlLPCgH~cfC~~Ca~~l~~-qs~~CPICR~~I~~ 350 (361)
..|.||.+. ..+. .+.+|||. ||.+|+..++. ....||+|+..+..
T Consensus 4 ~~CP~Ck~~~y~np~~kl~i~~CGH~-~C~sCv~~l~~~~~~~CP~C~~~lrk 55 (309)
T TIGR00570 4 QGCPRCKTTKYRNPSLKLMVNVCGHT-LCESCVDLLFVRGSGSCPECDTPLRK 55 (309)
T ss_pred CCCCcCCCCCccCcccccccCCCCCc-ccHHHHHHHhcCCCCCCCCCCCccch
Confidence 579999983 2222 22379999 99999999654 34679999998764
No 40
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=97.45 E-value=0.00043 Score=74.75 Aligned_cols=32 Identities=19% Similarity=0.374 Sum_probs=16.3
Q ss_pred CCCCCCccccceeeeEeeceEecC-cceEEEEcC
Q 046132 117 MAPPPPYVEHQKAVTIRNDVNLKK-ESLKLEADE 149 (361)
Q Consensus 117 ~~~~~p~ve~q~t~tIrn~VNlrK-~SLRl~~~~ 149 (361)
|+|..|+ -..+-|.-+-+|-+|| +=.++++.+
T Consensus 606 maPvlP~-gLkpKK~~k~e~~Mrr~nW~kI~p~d 638 (1102)
T KOG1924|consen 606 MAPVLPF-GLKPKKVYKPEVPMRRFNWSKIVPRD 638 (1102)
T ss_pred ccccCCC-CCCccccCCCCCccccCCccccCccc
Confidence 4555552 2344455666676766 233455433
No 41
>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.26 E-value=1.9e-05 Score=78.41 Aligned_cols=55 Identities=31% Similarity=0.622 Sum_probs=45.2
Q ss_pred CCCeeeecccCCCCeEEeC-CCCcccCHHHHHH-HhccCCCCccccccccceEEEEcC
Q 046132 302 PGKECVICLSEPRDTTVLP-CRHMCMCSGCAKV-LRFQTNRCPICRQPVERLLEIKVN 357 (361)
Q Consensus 302 ~~~eCvICl~~~~d~vlLP-CgH~cfC~~Ca~~-l~~qs~~CPICR~~I~~ll~I~v~ 357 (361)
....|.||++-.+.++..+ |.|. ||+.|+.. ++...+.||.||+...+...++..
T Consensus 42 ~~v~c~icl~llk~tmttkeClhr-fc~~ci~~a~r~gn~ecptcRk~l~SkrsLr~D 98 (381)
T KOG0311|consen 42 IQVICPICLSLLKKTMTTKECLHR-FCFDCIWKALRSGNNECPTCRKKLVSKRSLRID 98 (381)
T ss_pred hhhccHHHHHHHHhhcccHHHHHH-HHHHHHHHHHHhcCCCCchHHhhccccccCCCC
Confidence 3568999999888877555 9999 99999988 666668899999999887666543
No 42
>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.23 E-value=0.00017 Score=71.69 Aligned_cols=49 Identities=29% Similarity=0.710 Sum_probs=44.7
Q ss_pred CCCCeeeecccCCCCeEEeCCCCcccCHHHHHHHhccCCCCccccccccc
Q 046132 301 DPGKECVICLSEPRDTTVLPCRHMCMCSGCAKVLRFQTNRCPICRQPVER 350 (361)
Q Consensus 301 ~~~~eCvICl~~~~d~vlLPCgH~cfC~~Ca~~l~~qs~~CPICR~~I~~ 350 (361)
.++..|.||+..+.+.++.||+|. -|++|+..-.+.++.|=.|.+.+..
T Consensus 420 sEd~lCpICyA~pi~Avf~PC~H~-SC~~CI~qHlmN~k~CFfCktTv~~ 468 (489)
T KOG4692|consen 420 SEDNLCPICYAGPINAVFAPCSHR-SCYGCITQHLMNCKRCFFCKTTVID 468 (489)
T ss_pred cccccCcceecccchhhccCCCCc-hHHHHHHHHHhcCCeeeEecceeee
Confidence 456789999999999999999999 8999999988888999999998875
No 43
>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.19 E-value=0.00017 Score=74.30 Aligned_cols=49 Identities=29% Similarity=0.716 Sum_probs=38.6
Q ss_pred CCCCeeeecccC-----------------CCCeEEeCCCCcccCHHHHHHHhcc-CCCCccccccccc
Q 046132 301 DPGKECVICLSE-----------------PRDTTVLPCRHMCMCSGCAKVLRFQ-TNRCPICRQPVER 350 (361)
Q Consensus 301 ~~~~eCvICl~~-----------------~~d~vlLPCgH~cfC~~Ca~~l~~q-s~~CPICR~~I~~ 350 (361)
+....|+|||+. .++-++.||.|. |...|+..|+.. +-.||+||.++..
T Consensus 569 ~~t~dC~ICMt~I~l~~~~s~~~~~~~~~~~nYm~tPC~Hi-fH~~CL~~WMd~ykl~CPvCR~pLPp 635 (636)
T KOG0828|consen 569 RRTNDCVICMTPIDLRSTGSDCMVASMMVRRNYMLTPCHHI-FHRQCLLQWMDTYKLICPVCRCPLPP 635 (636)
T ss_pred hccccceEeccccceeeccCcchhhhhhhhccccccchHHH-HHHHHHHHHHhhhcccCCccCCCCCC
Confidence 345689999972 234567799999 999999999873 4589999998754
No 44
>PF14447 Prok-RING_4: Prokaryotic RING finger family 4
Probab=96.99 E-value=0.00031 Score=52.44 Aligned_cols=45 Identities=40% Similarity=0.900 Sum_probs=38.6
Q ss_pred CCeeeecccCCCCeEEeCCCCcccCHHHHHHHhccCCCCccccccccc
Q 046132 303 GKECVICLSEPRDTTVLPCRHMCMCSGCAKVLRFQTNRCPICRQPVER 350 (361)
Q Consensus 303 ~~eCvICl~~~~d~vlLPCgH~cfC~~Ca~~l~~qs~~CPICR~~I~~ 350 (361)
.-.|+.|.......+++||+|+ .|..|....++ +-||+|-.+|+.
T Consensus 7 ~~~~~~~~~~~~~~~~~pCgH~-I~~~~f~~~rY--ngCPfC~~~~~~ 51 (55)
T PF14447_consen 7 EQPCVFCGFVGTKGTVLPCGHL-ICDNCFPGERY--NGCPFCGTPFEF 51 (55)
T ss_pred ceeEEEccccccccccccccce-eeccccChhhc--cCCCCCCCcccC
Confidence 4579999999999999999999 99999877663 589999988764
No 45
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=96.99 E-value=0.00068 Score=55.00 Aligned_cols=32 Identities=28% Similarity=0.572 Sum_probs=26.6
Q ss_pred EEeCCCCcccCHHHHHHHhcc---CCCCcccccccc
Q 046132 317 TVLPCRHMCMCSGCAKVLRFQ---TNRCPICRQPVE 349 (361)
Q Consensus 317 vlLPCgH~cfC~~Ca~~l~~q---s~~CPICR~~I~ 349 (361)
++--|+|. |..-|+.+|..+ +..||+||+...
T Consensus 48 v~g~C~H~-FH~hCI~kWl~~~~~~~~CPmCR~~w~ 82 (85)
T PF12861_consen 48 VWGKCSHN-FHMHCILKWLSTQSSKGQCPMCRQPWK 82 (85)
T ss_pred eeccCccH-HHHHHHHHHHccccCCCCCCCcCCeee
Confidence 45579999 999999998875 367999999764
No 46
>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.98 E-value=0.00039 Score=70.87 Aligned_cols=49 Identities=29% Similarity=0.653 Sum_probs=44.0
Q ss_pred CCCCeeeecccCCCCeEEeCCCCcccCHHHHHHHhccCCCCccccccccc
Q 046132 301 DPGKECVICLSEPRDTTVLPCRHMCMCSGCAKVLRFQTNRCPICRQPVER 350 (361)
Q Consensus 301 ~~~~eCvICl~~~~d~vlLPCgH~cfC~~Ca~~l~~qs~~CPICR~~I~~ 350 (361)
..+.+|.||+...-.++.+||||. ||..|+.+...+...||.||..+..
T Consensus 82 ~sef~c~vc~~~l~~pv~tpcghs-~c~~Cl~r~ld~~~~cp~Cr~~l~e 130 (398)
T KOG4159|consen 82 RSEFECCVCSRALYPPVVTPCGHS-FCLECLDRSLDQETECPLCRDELVE 130 (398)
T ss_pred cchhhhhhhHhhcCCCcccccccc-ccHHHHHHHhccCCCCccccccccc
Confidence 456899999999999999999999 9999998877788899999998875
No 47
>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class
Probab=96.41 E-value=0.0025 Score=46.43 Aligned_cols=40 Identities=30% Similarity=0.726 Sum_probs=32.5
Q ss_pred eeeeccc--CCCCeEEeCCC-----CcccCHHHHHHHhccC--CCCcccc
Q 046132 305 ECVICLS--EPRDTTVLPCR-----HMCMCSGCAKVLRFQT--NRCPICR 345 (361)
Q Consensus 305 eCvICl~--~~~d~vlLPCg-----H~cfC~~Ca~~l~~qs--~~CPICR 345 (361)
.|.||++ ...+.++.||. |. +...|+..|...+ .+|++|.
T Consensus 1 ~CrIC~~~~~~~~~l~~PC~C~G~~~~-vH~~Cl~~W~~~~~~~~C~iC~ 49 (49)
T smart00744 1 ICRICHDEGDEGDPLVSPCRCKGSLKY-VHQECLERWINESGNKTCEICK 49 (49)
T ss_pred CccCCCCCCCCCCeeEeccccCCchhH-HHHHHHHHHHHHcCCCcCCCCC
Confidence 3899997 56677889996 67 8999999998654 5799994
No 48
>PF04641 Rtf2: Rtf2 RING-finger
Probab=96.38 E-value=0.0075 Score=58.08 Aligned_cols=59 Identities=24% Similarity=0.456 Sum_probs=46.3
Q ss_pred CCCCCeeeecccCCC----CeEEeCCCCcccCHHHHHHHhccCCCCccccccccceEEEEcCCCC
Q 046132 300 NDPGKECVICLSEPR----DTTVLPCRHMCMCSGCAKVLRFQTNRCPICRQPVERLLEIKVNGPE 360 (361)
Q Consensus 300 ~~~~~eCvICl~~~~----d~vlLPCgH~cfC~~Ca~~l~~qs~~CPICR~~I~~ll~I~v~~~~ 360 (361)
......|.|+..+.. -+.+.+|||+ |+..+++.+. ....||+|-.++...--|.++..+
T Consensus 110 ~~~~~~CPvt~~~~~~~~~fv~l~~cG~V-~s~~alke~k-~~~~Cp~c~~~f~~~DiI~Lnp~~ 172 (260)
T PF04641_consen 110 SEGRFICPVTGKEFNGKHKFVYLRPCGCV-FSEKALKELK-KSKKCPVCGKPFTEEDIIPLNPPE 172 (260)
T ss_pred CCceeECCCCCcccCCceeEEEEcCCCCE-eeHHHHHhhc-ccccccccCCccccCCEEEecCCc
Confidence 445678999987653 3567899999 9999999995 456799999999877666666644
No 49
>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B.
Probab=96.27 E-value=0.0009 Score=51.56 Aligned_cols=43 Identities=28% Similarity=0.803 Sum_probs=23.2
Q ss_pred CCeeeecccCCCCeE-EeCCCCcccCHHHHHHHhccCCCCccccccc
Q 046132 303 GKECVICLSEPRDTT-VLPCRHMCMCSGCAKVLRFQTNRCPICRQPV 348 (361)
Q Consensus 303 ~~eCvICl~~~~d~v-lLPCgH~cfC~~Ca~~l~~qs~~CPICR~~I 348 (361)
...|.+|.+-.+.++ +.-|.|. ||+.|+..-. ...||+|+.+.
T Consensus 7 lLrCs~C~~~l~~pv~l~~CeH~-fCs~Ci~~~~--~~~CPvC~~Pa 50 (65)
T PF14835_consen 7 LLRCSICFDILKEPVCLGGCEHI-FCSSCIRDCI--GSECPVCHTPA 50 (65)
T ss_dssp TTS-SSS-S--SS-B---SSS---B-TTTGGGGT--TTB-SSS--B-
T ss_pred hcCCcHHHHHhcCCceeccCccH-HHHHHhHHhc--CCCCCCcCChH
Confidence 467999999999986 5789999 9999997632 24699999876
No 50
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=96.21 E-value=0.0024 Score=59.38 Aligned_cols=50 Identities=24% Similarity=0.438 Sum_probs=43.1
Q ss_pred CCeeeecccCCCCeEEeCCCCcccCHHHHHHHhccCCCCccccccccceEE
Q 046132 303 GKECVICLSEPRDTTVLPCRHMCMCSGCAKVLRFQTNRCPICRQPVERLLE 353 (361)
Q Consensus 303 ~~eCvICl~~~~d~vlLPCgH~cfC~~Ca~~l~~qs~~CPICR~~I~~ll~ 353 (361)
-..|.||-...+..++.-|||. ||..|+..-......|-+|-....++..
T Consensus 196 PF~C~iCKkdy~spvvt~CGH~-FC~~Cai~~y~kg~~C~~Cgk~t~G~f~ 245 (259)
T COG5152 196 PFLCGICKKDYESPVVTECGHS-FCSLCAIRKYQKGDECGVCGKATYGRFW 245 (259)
T ss_pred ceeehhchhhccchhhhhcchh-HHHHHHHHHhccCCcceecchhhcccee
Confidence 3589999999999999999999 9999999866667899999887766543
No 51
>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.15 E-value=0.0052 Score=59.55 Aligned_cols=53 Identities=28% Similarity=0.662 Sum_probs=41.6
Q ss_pred CCCCCCeeeecccCCCCeE-EeCCCCcccCHHHHHHHhc--cCCCCccccccccceE
Q 046132 299 ANDPGKECVICLSEPRDTT-VLPCRHMCMCSGCAKVLRF--QTNRCPICRQPVERLL 352 (361)
Q Consensus 299 ~~~~~~eCvICl~~~~d~v-lLPCgH~cfC~~Ca~~l~~--qs~~CPICR~~I~~ll 352 (361)
....+.+|++|-+.+..+. +.+|||. +|+.|+.+-+. -+-+||.|-..+..+.
T Consensus 235 ~~t~~~~C~~Cg~~PtiP~~~~~C~Hi-yCY~Ci~ts~~~~asf~Cp~Cg~~~~~lq 290 (298)
T KOG2879|consen 235 TGTSDTECPVCGEPPTIPHVIGKCGHI-YCYYCIATSRLWDASFTCPLCGENVEPLQ 290 (298)
T ss_pred cccCCceeeccCCCCCCCeeeccccce-eehhhhhhhhcchhhcccCccCCCCcchh
Confidence 3456789999999988875 5569999 99999988332 3468999998887554
No 52
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=96.11 E-value=0.0013 Score=71.16 Aligned_cols=50 Identities=20% Similarity=0.431 Sum_probs=40.3
Q ss_pred CeeeecccCCCCeEE---eCCCCcccCHHHHHHHhccCCCCccccccccceEEE
Q 046132 304 KECVICLSEPRDTTV---LPCRHMCMCSGCAKVLRFQTNRCPICRQPVERLLEI 354 (361)
Q Consensus 304 ~eCvICl~~~~d~vl---LPCgH~cfC~~Ca~~l~~qs~~CPICR~~I~~ll~I 354 (361)
..|.+|+....|-++ .+|+|. ||..|+..|..-..+||+||..+..++..
T Consensus 124 ~~CP~Ci~s~~DqL~~~~k~c~H~-FC~~Ci~sWsR~aqTCPiDR~EF~~v~V~ 176 (1134)
T KOG0825|consen 124 NQCPNCLKSCNDQLEESEKHTAHY-FCEECVGSWSRCAQTCPVDRGEFGEVKVL 176 (1134)
T ss_pred hhhhHHHHHHHHHhhccccccccc-cHHHHhhhhhhhcccCchhhhhhheeeee
Confidence 467778776666443 479999 99999999998889999999998876544
No 53
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=96.10 E-value=0.0059 Score=62.62 Aligned_cols=46 Identities=22% Similarity=0.502 Sum_probs=35.0
Q ss_pred CCCCCeeeecccCCCCe----EEeCCCCcccCHHHHHHHhccCCCCccccccc
Q 046132 300 NDPGKECVICLSEPRDT----TVLPCRHMCMCSGCAKVLRFQTNRCPICRQPV 348 (361)
Q Consensus 300 ~~~~~eCvICl~~~~d~----vlLPCgH~cfC~~Ca~~l~~qs~~CPICR~~I 348 (361)
..+--.|+|||++.-.- +...|.|. |...|+..|+. .+||+||--.
T Consensus 172 ~tELPTCpVCLERMD~s~~gi~t~~c~Hs-fh~~cl~~w~~--~scpvcR~~q 221 (493)
T KOG0804|consen 172 LTELPTCPVCLERMDSSTTGILTILCNHS-FHCSCLMKWWD--SSCPVCRYCQ 221 (493)
T ss_pred cccCCCcchhHhhcCccccceeeeecccc-cchHHHhhccc--CcChhhhhhc
Confidence 34456899999864432 44679999 99999999974 5899999644
No 54
>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]
Probab=95.85 E-value=0.0044 Score=63.17 Aligned_cols=53 Identities=34% Similarity=0.701 Sum_probs=45.6
Q ss_pred CCCCCeeeecccCCCCeEE-eCCCCcccCHHHHHHHhccCCCCccccccccceEE
Q 046132 300 NDPGKECVICLSEPRDTTV-LPCRHMCMCSGCAKVLRFQTNRCPICRQPVERLLE 353 (361)
Q Consensus 300 ~~~~~eCvICl~~~~d~vl-LPCgH~cfC~~Ca~~l~~qs~~CPICR~~I~~ll~ 353 (361)
.+++..|.+|+...++.+. ..|||. ||..|+..|......||.||..+.....
T Consensus 18 ~~~~l~C~~C~~vl~~p~~~~~cgh~-fC~~C~~~~~~~~~~cp~~~~~~~~~~~ 71 (391)
T KOG0297|consen 18 LDENLLCPICMSVLRDPVQTTTCGHR-FCAGCLLESLSNHQKCPVCRQELTQAEE 71 (391)
T ss_pred CcccccCccccccccCCCCCCCCCCc-ccccccchhhccCcCCcccccccchhhc
Confidence 4567899999999999988 599999 9999999998888899999887765433
No 55
>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.71 E-value=0.0048 Score=60.32 Aligned_cols=49 Identities=24% Similarity=0.495 Sum_probs=42.4
Q ss_pred CCeeeecccCCCCeEEeCCCCcccCHHHHHHHhccCCCCccccccccceE
Q 046132 303 GKECVICLSEPRDTTVLPCRHMCMCSGCAKVLRFQTNRCPICRQPVERLL 352 (361)
Q Consensus 303 ~~eCvICl~~~~d~vlLPCgH~cfC~~Ca~~l~~qs~~CPICR~~I~~ll 352 (361)
...|-||...+.+.|+..|+|. ||..|+..-......|.||-+.+.++.
T Consensus 241 Pf~c~icr~~f~~pVvt~c~h~-fc~~ca~~~~qk~~~c~vC~~~t~g~~ 289 (313)
T KOG1813|consen 241 PFKCFICRKYFYRPVVTKCGHY-FCEVCALKPYQKGEKCYVCSQQTHGSF 289 (313)
T ss_pred CccccccccccccchhhcCCce-eehhhhccccccCCcceeccccccccc
Confidence 3569999999999999999999 999999886556689999998887653
No 56
>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=95.26 E-value=0.007 Score=66.85 Aligned_cols=48 Identities=23% Similarity=0.592 Sum_probs=36.1
Q ss_pred CCCCeeeecccCCC-------CeEEeCCCCcccCHHHHHHHhccC--CCCcccccccc
Q 046132 301 DPGKECVICLSEPR-------DTTVLPCRHMCMCSGCAKVLRFQT--NRCPICRQPVE 349 (361)
Q Consensus 301 ~~~~eCvICl~~~~-------d~vlLPCgH~cfC~~Ca~~l~~qs--~~CPICR~~I~ 349 (361)
..-.||.||++... .-..--|+|- |+..|+-+|...+ ++||+||..|.
T Consensus 1467 sG~eECaICYsvL~~vdr~lPskrC~TCknK-FH~~CLyKWf~Ss~~s~CPlCRseit 1523 (1525)
T COG5219 1467 SGHEECAICYSVLDMVDRSLPSKRCATCKNK-FHTRCLYKWFASSARSNCPLCRSEIT 1523 (1525)
T ss_pred CCcchhhHHHHHHHHHhccCCccccchhhhh-hhHHHHHHHHHhcCCCCCCccccccc
Confidence 34578999997321 1233459999 9999999998764 67999998775
No 57
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.95 E-value=0.027 Score=54.08 Aligned_cols=75 Identities=16% Similarity=0.308 Sum_probs=52.1
Q ss_pred ecCeeeeehhhhcCCCCCCCCCC------CCCCCCeeeecccCCCCe----EEeCCCCcccCHHHHHHHhccCCCCcccc
Q 046132 276 VNGMRYELQEIYGIGNSVDGDVD------ANDPGKECVICLSEPRDT----TVLPCRHMCMCSGCAKVLRFQTNRCPICR 345 (361)
Q Consensus 276 v~g~~yeLqeiygi~~s~~~~~~------~~~~~~eCvICl~~~~d~----vlLPCgH~cfC~~Ca~~l~~qs~~CPICR 345 (361)
+.|....|.+++.+.=....+.+ .......|.||.+...++ ++-||||+ +|.+|++.|...-..||+|-
T Consensus 188 ~s~kplklkdL~~VkFT~l~s~~~et~l~a~s~ryiCpvtrd~LtNt~~ca~Lr~sg~V-v~~ecvEklir~D~v~pv~d 266 (303)
T KOG3039|consen 188 VSGKPLKLKDLFAVKFTPLNSEETETKLIAASKRYICPVTRDTLTNTTPCAVLRPSGHV-VTKECVEKLIRKDMVDPVTD 266 (303)
T ss_pred CCCCccchhhcceeeeeecCCchhhhhhhhhccceecccchhhhcCccceEEeccCCcE-eeHHHHHHhccccccccCCC
Confidence 45555667777665322211111 112456899999866653 56789999 99999999988888999999
Q ss_pred ccccce
Q 046132 346 QPVERL 351 (361)
Q Consensus 346 ~~I~~l 351 (361)
.+....
T Consensus 267 ~plkdr 272 (303)
T KOG3039|consen 267 KPLKDR 272 (303)
T ss_pred CcCccc
Confidence 888653
No 58
>KOG2113 consensus Predicted RNA binding protein, contains KH domain [General function prediction only]
Probab=94.90 E-value=0.026 Score=55.76 Aligned_cols=55 Identities=9% Similarity=-0.100 Sum_probs=46.7
Q ss_pred CCCCCCCeeeecccCCCCeEEeCCCCcccCHHHHHHHhccCCCCccccccccceEEE
Q 046132 298 DANDPGKECVICLSEPRDTTVLPCRHMCMCSGCAKVLRFQTNRCPICRQPVERLLEI 354 (361)
Q Consensus 298 ~~~~~~~eCvICl~~~~d~vlLPCgH~cfC~~Ca~~l~~qs~~CPICR~~I~~ll~I 354 (361)
+.....++|.+|-.....+++.+|+|.-||.+||.. .-...|++|...+..+++|
T Consensus 338 ~~~~s~~~~~~~~~~~~st~~~~~~~n~~~~~~a~~--s~~~~~~~c~~~~~~~~~i 392 (394)
T KOG2113|consen 338 NGLMSSLKGTSAGFGLLSTIWSGGNMNLSPGSLASA--SASPTSSTCDHNDHTLVPI 392 (394)
T ss_pred ccchhhcccccccCceeeeEeecCCcccChhhhhhc--ccCCccccccccceeeeec
Confidence 344556899999999999999999999999999983 3457899999888888876
No 59
>KOG4367 consensus Predicted Zn-finger protein [Function unknown]
Probab=94.72 E-value=0.017 Score=59.30 Aligned_cols=37 Identities=35% Similarity=0.789 Sum_probs=32.1
Q ss_pred CCCCeeeecccCCCCeEEeCCCCcccCHHHHHHHhccC
Q 046132 301 DPGKECVICLSEPRDTTVLPCRHMCMCSGCAKVLRFQT 338 (361)
Q Consensus 301 ~~~~eCvICl~~~~d~vlLPCgH~cfC~~Ca~~l~~qs 338 (361)
+++..|.||-+-.+++++|+|+|. +|..|+.....++
T Consensus 2 eeelkc~vc~~f~~epiil~c~h~-lc~~ca~~~~~~t 38 (699)
T KOG4367|consen 2 EEELKCPVCGSFYREPIILPCSHN-LCQACARNILVQT 38 (699)
T ss_pred cccccCceehhhccCceEeecccH-HHHHHHHhhcccC
Confidence 345789999999999999999999 9999999865543
No 60
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=94.68 E-value=0.012 Score=61.66 Aligned_cols=49 Identities=27% Similarity=0.588 Sum_probs=39.7
Q ss_pred CCCCCCeeeecccCCCCeEEeCCCCcccCHHHHHHHhc-----cCCCCccccccc
Q 046132 299 ANDPGKECVICLSEPRDTTVLPCRHMCMCSGCAKVLRF-----QTNRCPICRQPV 348 (361)
Q Consensus 299 ~~~~~~eCvICl~~~~d~vlLPCgH~cfC~~Ca~~l~~-----qs~~CPICR~~I 348 (361)
++.+..+|.+|.+...|.+...|.|. ||..|+..... ..-+||+|-..+
T Consensus 532 enk~~~~C~lc~d~aed~i~s~ChH~-FCrlCi~eyv~~f~~~~nvtCP~C~i~L 585 (791)
T KOG1002|consen 532 ENKGEVECGLCHDPAEDYIESSCHHK-FCRLCIKEYVESFMENNNVTCPVCHIGL 585 (791)
T ss_pred cccCceeecccCChhhhhHhhhhhHH-HHHHHHHHHHHhhhcccCCCCccccccc
Confidence 44556799999999999999999999 99999976332 236799997654
No 61
>PF03854 zf-P11: P-11 zinc finger; InterPro: IPR003224 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The RING-finger is a specialised type of Zn-finger of 40 to 60 residues that binds two atoms of zinc, and is probably involved in mediating protein-protein interactions [, , ]. There are two different variants, the C3HC4-type and a C3H2C3-type, which is clearly related despite the different cysteine/histidine pattern. The latter type is sometimes referred to as 'RING-H2 finger'. The RING domain is a protein interaction domain which has been implicated in a range of diverse biological processes. Several 3D-structures for RING-fingers are known [, ]. The 3D structure of the zinc ligation system is unique to the RING domain and is referred to as the 'cross-brace' motif. The spacing of the cysteines in such a domain is: C-x(2)-C-x(9 to 39)-C-x(1 to 3)-H-x(2 to 3)-C-x(2)-C-x(4 to 48)-C-x(2)-C Metal ligand pairs one and three co-ordinate to bind one zinc ion, whilst pairs two and four bind the second. This entry represents RING finger protein Z, a small polypeptide found in some negative-strand RNA viruses including Lassa fever virus, which plays a crucial role in virion assembly and budding. RING finger Z has been shown to interact with several host proteins, including promyelocytic leukemia protein and the eukaryotic translation initiation factor 4E [, ]. It is sufficient in the absence of any other viral proteins to release virus-like particles from the infected cell []. This protein is also responsible for arenavirus superinfection exclusion; expression of this protein in a host cell strongly and specifically inhibits areanavirus transcription and replication []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003723 RNA binding, 0008270 zinc ion binding; PDB: 2KO5_A.
Probab=94.59 E-value=0.016 Score=42.12 Aligned_cols=45 Identities=27% Similarity=0.843 Sum_probs=26.2
Q ss_pred eeeecccCCCCeEEeCCC-CcccCHHHHHHHhccCCCCccccccccceE
Q 046132 305 ECVICLSEPRDTTVLPCR-HMCMCSGCAKVLRFQTNRCPICRQPVERLL 352 (361)
Q Consensus 305 eCvICl~~~~d~vlLPCg-H~cfC~~Ca~~l~~qs~~CPICR~~I~~ll 352 (361)
-|.-|.-+.+.. +-|. |. +|..|+..|...+..|+||..++...+
T Consensus 4 nCKsCWf~~k~L--i~C~dHY-LCl~CLt~ml~~s~~C~iC~~~LPtki 49 (50)
T PF03854_consen 4 NCKSCWFANKGL--IKCSDHY-LCLNCLTLMLSRSDRCPICGKPLPTKI 49 (50)
T ss_dssp ---SS-S--SSE--EE-SS-E-EEHHHHHHT-SSSSEETTTTEE----S
T ss_pred cChhhhhcCCCe--eeecchh-HHHHHHHHHhccccCCCcccCcCcccc
Confidence 377777555544 4576 77 999999999999999999988776543
No 62
>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.47 E-value=0.016 Score=59.00 Aligned_cols=44 Identities=30% Similarity=0.666 Sum_probs=33.1
Q ss_pred CCCeeeecccCCCC---eEEeCCCCcccCHHHHHHHh--------ccCCCCccccc
Q 046132 302 PGKECVICLSEPRD---TTVLPCRHMCMCSGCAKVLR--------FQTNRCPICRQ 346 (361)
Q Consensus 302 ~~~eCvICl~~~~d---~vlLPCgH~cfC~~Ca~~l~--------~qs~~CPICR~ 346 (361)
....|.||+++... ..++||+|+ ||..|++... .+.-+||-|..
T Consensus 183 slf~C~ICf~e~~G~~c~~~lpC~Hv-~Ck~C~kdY~~~~i~eg~v~~l~Cp~~~C 237 (445)
T KOG1814|consen 183 SLFDCCICFEEQMGQHCFKFLPCSHV-FCKSCLKDYFTIQIQEGQVSCLKCPDPKC 237 (445)
T ss_pred hcccceeeehhhcCcceeeecccchH-HHHHHHHHHHHHhhhcceeeeecCCCCCC
Confidence 34689999997765 678999999 9999998732 12356876644
No 63
>KOG3002 consensus Zn finger protein [General function prediction only]
Probab=94.19 E-value=0.024 Score=55.94 Aligned_cols=44 Identities=30% Similarity=0.847 Sum_probs=36.2
Q ss_pred CCCeeeecccCCCCeEEeCC--CCcccCHHHHHHHhccCCCCccccccccc
Q 046132 302 PGKECVICLSEPRDTTVLPC--RHMCMCSGCAKVLRFQTNRCPICRQPVER 350 (361)
Q Consensus 302 ~~~eCvICl~~~~d~vlLPC--gH~cfC~~Ca~~l~~qs~~CPICR~~I~~ 350 (361)
+-.+|.||+....-.++ -| ||+ .|..|...+. ++||.||.++..
T Consensus 47 ~lleCPvC~~~l~~Pi~-QC~nGHl-aCssC~~~~~---~~CP~Cr~~~g~ 92 (299)
T KOG3002|consen 47 DLLDCPVCFNPLSPPIF-QCDNGHL-ACSSCRTKVS---NKCPTCRLPIGN 92 (299)
T ss_pred hhccCchhhccCcccce-ecCCCcE-ehhhhhhhhc---ccCCcccccccc
Confidence 34689999988877765 56 699 9999997764 789999999874
No 64
>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B.
Probab=94.19 E-value=0.024 Score=41.34 Aligned_cols=42 Identities=33% Similarity=0.795 Sum_probs=20.9
Q ss_pred eeecccCC--CCeEEeC--CCCcccCHHHHHHHhc-cCCCCccccccc
Q 046132 306 CVICLSEP--RDTTVLP--CRHMCMCSGCAKVLRF-QTNRCPICRQPV 348 (361)
Q Consensus 306 CvICl~~~--~d~vlLP--CgH~cfC~~Ca~~l~~-qs~~CPICR~~I 348 (361)
|.+|.++. ++..++| ||+. +|..|...++. ...+||-||.+.
T Consensus 1 cp~C~e~~d~~d~~~~PC~Cgf~-IC~~C~~~i~~~~~g~CPgCr~~Y 47 (48)
T PF14570_consen 1 CPLCDEELDETDKDFYPCECGFQ-ICRFCYHDILENEGGRCPGCREPY 47 (48)
T ss_dssp -TTTS-B--CCCTT--SSTTS-----HHHHHHHTTSS-SB-TTT--B-
T ss_pred CCCcccccccCCCccccCcCCCc-HHHHHHHHHHhccCCCCCCCCCCC
Confidence 45666543 4445666 7888 99999999875 468899999874
No 65
>PF07800 DUF1644: Protein of unknown function (DUF1644); InterPro: IPR012866 This family consists of sequences found in a number of hypothetical plant proteins of unknown function. The region of interest contains nine highly conserved cysteine residues and is approximately 160 amino acids in length, which probably represent a zinc-binding domain.
Probab=94.18 E-value=0.058 Score=48.59 Aligned_cols=52 Identities=29% Similarity=0.678 Sum_probs=37.9
Q ss_pred CCeeeecccCCCCeEEeCCC-Ccc-----c------CHHHHHHHhcc-------------------------------CC
Q 046132 303 GKECVICLSEPRDTTVLPCR-HMC-----M------CSGCAKVLRFQ-------------------------------TN 339 (361)
Q Consensus 303 ~~eCvICl~~~~d~vlLPCg-H~c-----f------C~~Ca~~l~~q-------------------------------s~ 339 (361)
+..|.|||+-+-++|||-|. |-- + .+.|++..+.. ..
T Consensus 2 d~~CpICme~PHNAVLLlCSS~~kgcRpymc~Ts~rhSNCLdqfkka~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L 81 (162)
T PF07800_consen 2 DVTCPICMEHPHNAVLLLCSSHEKGCRPYMCDTSYRHSNCLDQFKKAYGKSSSSSSQSSSSAPSDSSSSESSESQEQPEL 81 (162)
T ss_pred CccCceeccCCCceEEEEeccccCCccccccCCccchhHHHHHHHHHhcCCCCccccccccCcCCCcccccccccccccc
Confidence 46799999999999999764 211 2 36788775420 13
Q ss_pred CCccccccccceEEE
Q 046132 340 RCPICRQPVERLLEI 354 (361)
Q Consensus 340 ~CPICR~~I~~ll~I 354 (361)
.||+||..|.+...|
T Consensus 82 ~CPLCRG~V~GWtvv 96 (162)
T PF07800_consen 82 ACPLCRGEVKGWTVV 96 (162)
T ss_pred cCccccCceeceEEc
Confidence 599999999887665
No 66
>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]
Probab=94.01 E-value=0.013 Score=58.05 Aligned_cols=50 Identities=24% Similarity=0.602 Sum_probs=41.5
Q ss_pred CCCCeeeecccCCCCeE-EeCCCCcccCHHHHHHHhccCCCCccccccccce
Q 046132 301 DPGKECVICLSEPRDTT-VLPCRHMCMCSGCAKVLRFQTNRCPICRQPVERL 351 (361)
Q Consensus 301 ~~~~eCvICl~~~~d~v-lLPCgH~cfC~~Ca~~l~~qs~~CPICR~~I~~l 351 (361)
.....|.+|-.-..|++ +.-|-|. ||.+|+-.-....+.||.|...|...
T Consensus 13 n~~itC~LC~GYliDATTI~eCLHT-FCkSCivk~l~~~~~CP~C~i~ih~t 63 (331)
T KOG2660|consen 13 NPHITCRLCGGYLIDATTITECLHT-FCKSCIVKYLEESKYCPTCDIVIHKT 63 (331)
T ss_pred ccceehhhccceeecchhHHHHHHH-HHHHHHHHHHHHhccCCccceeccCc
Confidence 34568999999999876 4559999 99999998666688999999988664
No 67
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=93.77 E-value=0.033 Score=54.14 Aligned_cols=50 Identities=22% Similarity=0.566 Sum_probs=38.2
Q ss_pred CCCCCeeeecccCCC----------CeEEeCCCCcccCHHHHHHHhc--cCCCCccccccccc
Q 046132 300 NDPGKECVICLSEPR----------DTTVLPCRHMCMCSGCAKVLRF--QTNRCPICRQPVER 350 (361)
Q Consensus 300 ~~~~~eCvICl~~~~----------d~vlLPCgH~cfC~~Ca~~l~~--qs~~CPICR~~I~~ 350 (361)
..++..|.||-...- ++--|.|+|. |...|++-|-. ++.+||-|...|+.
T Consensus 221 hl~d~vCaVCg~~~~~s~~eegvienty~LsCnHv-FHEfCIrGWcivGKkqtCPYCKekVdl 282 (328)
T KOG1734|consen 221 HLSDSVCAVCGQQIDVSVDEEGVIENTYKLSCNHV-FHEFCIRGWCIVGKKQTCPYCKEKVDL 282 (328)
T ss_pred CCCcchhHhhcchheeecchhhhhhhheeeecccc-hHHHhhhhheeecCCCCCchHHHHhhH
Confidence 345678999975433 3446899999 99999999865 45689999887754
No 68
>PF05883 Baculo_RING: Baculovirus U-box/Ring-like domain; InterPro: IPR008573 This family consists of several Baculovirus proteins of around 130 residues in length. The function of this family is unknown, but it appears to be related to the U-box and ring finger domain by profile-profile comparison.
Probab=93.73 E-value=0.029 Score=49.26 Aligned_cols=34 Identities=26% Similarity=0.581 Sum_probs=27.6
Q ss_pred CCeeeecccCCCC---eEEeCCC------CcccCHHHHHHHhcc
Q 046132 303 GKECVICLSEPRD---TTVLPCR------HMCMCSGCAKVLRFQ 337 (361)
Q Consensus 303 ~~eCvICl~~~~d---~vlLPCg------H~cfC~~Ca~~l~~q 337 (361)
..||.||+++.-+ .+.+.|+ || ||.+|.++|...
T Consensus 26 ~~EC~IC~~~I~~~~GvV~vt~~g~lnLEkm-fc~~C~~rw~~~ 68 (134)
T PF05883_consen 26 TVECQICFDRIDNNDGVVYVTDGGTLNLEKM-FCADCDKRWRRE 68 (134)
T ss_pred CeeehhhhhhhhcCCCEEEEecCCeehHHHH-HHHHHHHHHHhh
Confidence 5799999997655 5678888 77 999999999543
No 69
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=93.39 E-value=0.032 Score=60.72 Aligned_cols=45 Identities=29% Similarity=0.649 Sum_probs=37.5
Q ss_pred CeeeecccCCCCeEEeCCCCcccCHHHHHHHhccC--CCCccccccccc
Q 046132 304 KECVICLSEPRDTTVLPCRHMCMCSGCAKVLRFQT--NRCPICRQPVER 350 (361)
Q Consensus 304 ~eCvICl~~~~d~vlLPCgH~cfC~~Ca~~l~~qs--~~CPICR~~I~~ 350 (361)
..|.||++ ..+.++..|+|. ||.+|........ ..||+||..+..
T Consensus 455 ~~c~ic~~-~~~~~it~c~h~-~c~~c~~~~i~~~~~~~~~~cr~~l~~ 501 (674)
T KOG1001|consen 455 HWCHICCD-LDSFFITRCGHD-FCVECLKKSIQQSENAPCPLCRNVLKE 501 (674)
T ss_pred cccccccc-cccceeecccch-HHHHHHHhccccccCCCCcHHHHHHHH
Confidence 78999999 888889999999 9999998854432 469999987753
No 70
>KOG4739 consensus Uncharacterized protein involved in synaptonemal complex formation [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=93.12 E-value=0.038 Score=52.72 Aligned_cols=43 Identities=30% Similarity=0.883 Sum_probs=30.5
Q ss_pred eeeecccCCC-Ce-EEeCCCCcccCHHHHHHHhccCCCCccccccccc
Q 046132 305 ECVICLSEPR-DT-TVLPCRHMCMCSGCAKVLRFQTNRCPICRQPVER 350 (361)
Q Consensus 305 eCvICl~~~~-d~-vlLPCgH~cfC~~Ca~~l~~qs~~CPICR~~I~~ 350 (361)
.|-.|.-... +. -|+.|+|+ ||..|...-. ...|++|+..|..
T Consensus 5 hCn~C~~~~~~~~f~LTaC~Hv-fC~~C~k~~~--~~~C~lCkk~ir~ 49 (233)
T KOG4739|consen 5 HCNKCFRFPSQDPFFLTACRHV-FCEPCLKASS--PDVCPLCKKSIRI 49 (233)
T ss_pred EeccccccCCCCceeeeechhh-hhhhhcccCC--ccccccccceeee
Confidence 4777765433 33 46789999 9999987643 1289999998754
No 71
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=92.92 E-value=0.078 Score=53.85 Aligned_cols=49 Identities=22% Similarity=0.543 Sum_probs=34.0
Q ss_pred CCeeeecccCC---CCe-EEeCCCCcccCHHHHHHHhccC---CCCccccccccceE
Q 046132 303 GKECVICLSEP---RDT-TVLPCRHMCMCSGCAKVLRFQT---NRCPICRQPVERLL 352 (361)
Q Consensus 303 ~~eCvICl~~~---~d~-vlLPCgH~cfC~~Ca~~l~~qs---~~CPICR~~I~~ll 352 (361)
..+|.||.+-. .+. .+--|||. |...|+..|.... ..|||||..+....
T Consensus 4 ~A~C~Ic~d~~p~~~~l~~i~~cGhi-fh~~cl~qwfe~~Ps~R~cpic~ik~~~r~ 59 (465)
T KOG0827|consen 4 MAECHICIDGRPNDHELGPIGTCGHI-FHTTCLTQWFEGDPSNRGCPICQIKLQERH 59 (465)
T ss_pred cceeeEeccCCccccccccccchhhH-HHHHHHHHHHccCCccCCCCceeeccccee
Confidence 35899995422 222 23449999 9999999997643 47999995555443
No 72
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=92.64 E-value=0.088 Score=53.76 Aligned_cols=46 Identities=30% Similarity=0.663 Sum_probs=36.2
Q ss_pred CCCCeeeecccCCC-----CeEEeCCCCcccCHHHHHHHhccC--CCCcccccc
Q 046132 301 DPGKECVICLSEPR-----DTTVLPCRHMCMCSGCAKVLRFQT--NRCPICRQP 347 (361)
Q Consensus 301 ~~~~eCvICl~~~~-----d~vlLPCgH~cfC~~Ca~~l~~qs--~~CPICR~~ 347 (361)
+.+..|.||++... ..+.+-|||+ |=..|++.|.-++ ..||.|...
T Consensus 2 d~g~tcpiclds~~~~g~hr~vsl~cghl-Fgs~cie~wl~k~~~~~cp~c~~k 54 (463)
T KOG1645|consen 2 DCGTTCPICLDSYTTAGNHRIVSLQCGHL-FGSQCIEKWLGKKTKMQCPLCSGK 54 (463)
T ss_pred CccccCceeeeeeeecCceEEeeeccccc-ccHHHHHHHHhhhhhhhCcccCCh
Confidence 35689999998543 3466789999 9999999998643 569999654
No 73
>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0.
Probab=92.26 E-value=0.078 Score=46.54 Aligned_cols=48 Identities=25% Similarity=0.580 Sum_probs=39.1
Q ss_pred CCeeeecccCCCCeEEeC----CCCcccCHHHHHHHhccC---CCCccccccccce
Q 046132 303 GKECVICLSEPRDTTVLP----CRHMCMCSGCAKVLRFQT---NRCPICRQPVERL 351 (361)
Q Consensus 303 ~~eCvICl~~~~d~vlLP----CgH~cfC~~Ca~~l~~qs---~~CPICR~~I~~l 351 (361)
--+|-||.+...|-.+|- ||-. +|..|-..||.-. ..||+|++.+.+.
T Consensus 80 lYeCnIC~etS~ee~FLKPneCCgY~-iCn~Cya~LWK~~~~ypvCPvCkTSFKss 134 (140)
T PF05290_consen 80 LYECNICKETSAEERFLKPNECCGYS-ICNACYANLWKFCNLYPVCPVCKTSFKSS 134 (140)
T ss_pred ceeccCcccccchhhcCCcccccchH-HHHHHHHHHHHHcccCCCCCccccccccc
Confidence 358999999988888774 8877 9999999877543 6799999988653
No 74
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=92.05 E-value=0.1 Score=50.59 Aligned_cols=44 Identities=36% Similarity=0.807 Sum_probs=35.0
Q ss_pred CeeeecccCCCC------eEEeCCCCcccCHHHHHHHhccC-CCCccccccc
Q 046132 304 KECVICLSEPRD------TTVLPCRHMCMCSGCAKVLRFQT-NRCPICRQPV 348 (361)
Q Consensus 304 ~eCvICl~~~~d------~vlLPCgH~cfC~~Ca~~l~~qs-~~CPICR~~I 348 (361)
.+|.||-+...+ +.+|-|||. +|..|+..+...+ ..||.||...
T Consensus 4 ~~c~~c~~~~s~~~~~~~p~~l~c~h~-~c~~c~~~l~~~~~i~cpfcR~~~ 54 (296)
T KOG4185|consen 4 PECEICNEDYSSEDGDHIPRVLKCGHT-ICQNCASKLLGNSRILCPFCRETT 54 (296)
T ss_pred CceeecCccccccCcccCCcccccCce-ehHhHHHHHhcCceeeccCCCCcc
Confidence 479999875544 567789999 9999999976554 5699999985
No 75
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=91.82 E-value=0.079 Score=53.01 Aligned_cols=46 Identities=28% Similarity=0.788 Sum_probs=33.9
Q ss_pred CeeeecccCC--CCeEEeC--CCCcccCHHHHHHHhcc-CCCCccccccccc
Q 046132 304 KECVICLSEP--RDTTVLP--CRHMCMCSGCAKVLRFQ-TNRCPICRQPVER 350 (361)
Q Consensus 304 ~eCvICl~~~--~d~vlLP--CgH~cfC~~Ca~~l~~q-s~~CPICR~~I~~ 350 (361)
..|..|++.. .|--|.| ||-. .|..|...++.. ..+||-||...+.
T Consensus 15 d~cplcie~mditdknf~pc~cgy~-ic~fc~~~irq~lngrcpacrr~y~d 65 (480)
T COG5175 15 DYCPLCIEPMDITDKNFFPCPCGYQ-ICQFCYNNIRQNLNGRCPACRRKYDD 65 (480)
T ss_pred ccCcccccccccccCCcccCCcccH-HHHHHHHHHHhhccCCChHhhhhccc
Confidence 3499999853 3444555 7777 899999887754 4789999987754
No 76
>PHA03096 p28-like protein; Provisional
Probab=91.75 E-value=0.087 Score=51.75 Aligned_cols=42 Identities=24% Similarity=0.324 Sum_probs=30.3
Q ss_pred CeeeecccCC--------CCeEEeCCCCcccCHHHHHHHhccC---CCCccccc
Q 046132 304 KECVICLSEP--------RDTTVLPCRHMCMCSGCAKVLRFQT---NRCPICRQ 346 (361)
Q Consensus 304 ~eCvICl~~~--------~d~vlLPCgH~cfC~~Ca~~l~~qs---~~CPICR~ 346 (361)
.+|.|||+.. +..++--|.|. ||..|+..|+..+ ..|+.||.
T Consensus 179 k~c~ic~e~~~~k~~~~~~fgil~~c~h~-fc~~ci~~wr~~~~~~e~~~~c~~ 231 (284)
T PHA03096 179 KICGICLENIKAKYIIKKYYGILSEIKHE-FNIFCIKIWMTESLYKETEPENRR 231 (284)
T ss_pred hhcccchhhhhhhccccccccccccCCcH-HHHHHHHHHHHhhhhcccCccccc
Confidence 7899999843 33456679999 9999999998643 33444443
No 77
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]
Probab=91.72 E-value=0.1 Score=60.19 Aligned_cols=50 Identities=26% Similarity=0.689 Sum_probs=38.7
Q ss_pred CCCCCeeeecccCCCC---eEEeCCCCcccCHHHHHHHhcc----------CCCCccccccccc
Q 046132 300 NDPGKECVICLSEPRD---TTVLPCRHMCMCSGCAKVLRFQ----------TNRCPICRQPVER 350 (361)
Q Consensus 300 ~~~~~eCvICl~~~~d---~vlLPCgH~cfC~~Ca~~l~~q----------s~~CPICR~~I~~ 350 (361)
.+.+..|+||+.+.-. .+-|-|+|+ |...|.+.+... ...||||..+|..
T Consensus 3483 QD~DDmCmICFTE~L~AAP~IqL~C~Hi-FHlqC~R~vLE~RW~GPRItF~FisCPiC~n~InH 3545 (3738)
T KOG1428|consen 3483 QDADDMCMICFTEALSAAPAIQLDCSHI-FHLQCCRRVLENRWLGPRITFGFISCPICKNKINH 3545 (3738)
T ss_pred cccCceEEEEehhhhCCCcceecCCccc-hhHHHHHHHHHhcccCCeeEEeeeecccccchhhh
Confidence 3556789999997654 456899999 999999875432 2469999998865
No 78
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=91.64 E-value=0.025 Score=44.12 Aligned_cols=46 Identities=28% Similarity=0.590 Sum_probs=21.5
Q ss_pred CCeeeecccCCC-C---e-EEe---CCCCcccCHHHHHHHhcc---C--------CCCcccccccc
Q 046132 303 GKECVICLSEPR-D---T-TVL---PCRHMCMCSGCAKVLRFQ---T--------NRCPICRQPVE 349 (361)
Q Consensus 303 ~~eCvICl~~~~-d---~-vlL---PCgH~cfC~~Ca~~l~~q---s--------~~CPICR~~I~ 349 (361)
+.+|.||++... + + ++- .|++. |...|+..|... + .+||.|+++|.
T Consensus 2 ~~~C~IC~~~~~~~~~~p~~~C~n~~C~~~-fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~i~ 66 (70)
T PF11793_consen 2 ELECGICYSYRLDDGEIPDVVCPNPSCGKK-FHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSPIS 66 (70)
T ss_dssp --S-SSS--SS-TT-----B--S-TT-----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SEEE
T ss_pred CCCCCcCCcEecCCCCcCceEcCCcccCCH-HHHHHHHHHHHHcccCCeeecccccCCcCCCCeee
Confidence 357999998644 2 1 111 47777 899999998652 1 35999999775
No 79
>PHA02825 LAP/PHD finger-like protein; Provisional
Probab=91.58 E-value=0.21 Score=45.13 Aligned_cols=49 Identities=22% Similarity=0.371 Sum_probs=36.8
Q ss_pred CCCCCeeeecccCCCCeEEeCCCCcc----cCHHHHHHHhccC--CCCcccccccc
Q 046132 300 NDPGKECVICLSEPRDTTVLPCRHMC----MCSGCAKVLRFQT--NRCPICRQPVE 349 (361)
Q Consensus 300 ~~~~~eCvICl~~~~d~vlLPCgH~c----fC~~Ca~~l~~qs--~~CPICR~~I~ 349 (361)
...+.+|-||++...+ ...||+... ...+|++.|...+ ..|++|++.+.
T Consensus 5 s~~~~~CRIC~~~~~~-~~~PC~CkGs~k~VH~sCL~rWi~~s~~~~CeiC~~~Y~ 59 (162)
T PHA02825 5 SLMDKCCWICKDEYDV-VTNYCNCKNENKIVHKECLEEWINTSKNKSCKICNGPYN 59 (162)
T ss_pred CCCCCeeEecCCCCCC-ccCCcccCCCchHHHHHHHHHHHhcCCCCcccccCCeEE
Confidence 4556899999988653 456776532 4789999998765 57999998764
No 80
>KOG2932 consensus E3 ubiquitin ligase involved in ubiquitination of E-cadherin complex [Posttranslational modification, protein turnover, chaperones]
Probab=91.12 E-value=0.048 Score=53.94 Aligned_cols=47 Identities=30% Similarity=0.714 Sum_probs=32.0
Q ss_pred eeeecccCCCC-eEEeCCCCcccCHHHHHHHhccCCCCccccccccceEEE
Q 046132 305 ECVICLSEPRD-TTVLPCRHMCMCSGCAKVLRFQTNRCPICRQPVERLLEI 354 (361)
Q Consensus 305 eCvICl~~~~d-~vlLPCgH~cfC~~Ca~~l~~qs~~CPICR~~I~~ll~I 354 (361)
-|.-|---... ..++||.|+ ||.+||..-. -+.||.|-..|.++.++
T Consensus 92 fCd~Cd~PI~IYGRmIPCkHv-FCl~CAr~~~--dK~Cp~C~d~VqrIeq~ 139 (389)
T KOG2932|consen 92 FCDRCDFPIAIYGRMIPCKHV-FCLECARSDS--DKICPLCDDRVQRIEQI 139 (389)
T ss_pred eecccCCcceeeecccccchh-hhhhhhhcCc--cccCcCcccHHHHHHHh
Confidence 46666433222 347899999 9999997532 36799998877665433
No 81
>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]
Probab=90.84 E-value=0.22 Score=40.13 Aligned_cols=31 Identities=23% Similarity=0.313 Sum_probs=27.3
Q ss_pred EEeCCCCcccCHHHHHHHhccCCCCccccccc
Q 046132 317 TVLPCRHMCMCSGCAKVLRFQTNRCPICRQPV 348 (361)
Q Consensus 317 vlLPCgH~cfC~~Ca~~l~~qs~~CPICR~~I 348 (361)
+.--|.|. |..-|+.+|......||+||+..
T Consensus 50 ~wG~CnHa-FH~HCI~rWL~Tk~~CPld~q~w 80 (88)
T COG5194 50 VWGVCNHA-FHDHCIYRWLDTKGVCPLDRQTW 80 (88)
T ss_pred EEEecchH-HHHHHHHHHHhhCCCCCCCCcee
Confidence 34459999 99999999999889999999875
No 82
>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=90.15 E-value=0.13 Score=50.78 Aligned_cols=42 Identities=26% Similarity=0.738 Sum_probs=34.6
Q ss_pred CeeeecccCCCCeEEeC-CCCcccCHHHHHHHhc-cCCCCccccc
Q 046132 304 KECVICLSEPRDTTVLP-CRHMCMCSGCAKVLRF-QTNRCPICRQ 346 (361)
Q Consensus 304 ~eCvICl~~~~d~vlLP-CgH~cfC~~Ca~~l~~-qs~~CPICR~ 346 (361)
..|..|....++.+-.+ |+|. ||.+|+..... ....||.|..
T Consensus 275 LkCplc~~Llrnp~kT~cC~~~-fc~eci~~al~dsDf~CpnC~r 318 (427)
T COG5222 275 LKCPLCHCLLRNPMKTPCCGHT-FCDECIGTALLDSDFKCPNCSR 318 (427)
T ss_pred ccCcchhhhhhCcccCccccch-HHHHHHhhhhhhccccCCCccc
Confidence 78999999888888775 8899 99999997444 4468999965
No 83
>KOG0826 consensus Predicted E3 ubiquitin ligase involved in peroxisome organization [Posttranslational modification, protein turnover, chaperones]
Probab=90.05 E-value=0.21 Score=49.78 Aligned_cols=54 Identities=24% Similarity=0.563 Sum_probs=39.9
Q ss_pred CCCCeeeecccCCCCeEEeCC-CCcccCHHHHHHHhccCCCCcccccc--ccceEEEE
Q 046132 301 DPGKECVICLSEPRDTTVLPC-RHMCMCSGCAKVLRFQTNRCPICRQP--VERLLEIK 355 (361)
Q Consensus 301 ~~~~eCvICl~~~~d~vlLPC-gH~cfC~~Ca~~l~~qs~~CPICR~~--I~~ll~I~ 355 (361)
.+...|.||+....+..++-- |-+ ||+.|+-.-....++||+--.+ ++.+++++
T Consensus 298 ~~~~~CpvClk~r~Nptvl~vSGyV-fCY~Ci~~Yv~~~~~CPVT~~p~~v~~l~rl~ 354 (357)
T KOG0826|consen 298 PDREVCPVCLKKRQNPTVLEVSGYV-FCYPCIFSYVVNYGHCPVTGYPASVDHLIRLF 354 (357)
T ss_pred CccccChhHHhccCCCceEEecceE-EeHHHHHHHHHhcCCCCccCCcchHHHHHHHh
Confidence 445789999998887666554 776 9999999977778899985444 34555543
No 84
>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C.
Probab=88.74 E-value=0.3 Score=36.68 Aligned_cols=41 Identities=22% Similarity=0.358 Sum_probs=28.5
Q ss_pred CCCeeeecccCCCCeEEe-CCCCcccCHHHHHHHhc--cCCCCcc
Q 046132 302 PGKECVICLSEPRDTTVL-PCRHMCMCSGCAKVLRF--QTNRCPI 343 (361)
Q Consensus 302 ~~~eCvICl~~~~d~vlL-PCgH~cfC~~Ca~~l~~--qs~~CPI 343 (361)
-...|.|.+...++++.- -|+|. |..+.+..+.. ....||+
T Consensus 10 ~~~~CPiT~~~~~~PV~s~~C~H~-fek~aI~~~i~~~~~~~CPv 53 (57)
T PF11789_consen 10 ISLKCPITLQPFEDPVKSKKCGHT-FEKEAILQYIQRNGSKRCPV 53 (57)
T ss_dssp --SB-TTTSSB-SSEEEESSS--E-EEHHHHHHHCTTTS-EE-SC
T ss_pred eccCCCCcCChhhCCcCcCCCCCe-ecHHHHHHHHHhcCCCCCCC
Confidence 457899999999999875 79999 99999999873 3456998
No 85
>KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=87.61 E-value=0.23 Score=49.10 Aligned_cols=46 Identities=35% Similarity=0.699 Sum_probs=33.1
Q ss_pred CCeeeecccCCCC---eEEeCCCCcccCHHHHHHHhc-----------------c------CCCCcccccccc
Q 046132 303 GKECVICLSEPRD---TTVLPCRHMCMCSGCAKVLRF-----------------Q------TNRCPICRQPVE 349 (361)
Q Consensus 303 ~~eCvICl~~~~d---~vlLPCgH~cfC~~Ca~~l~~-----------------q------s~~CPICR~~I~ 349 (361)
...|+|||--+.+ .++.+|-|. |...|+.+... | ...|||||..|.
T Consensus 115 ~gqCvICLygfa~~~~ft~T~C~Hy-~H~~ClaRyl~~~~~~lrqe~q~~~~~~qh~~~~~eavcpVcre~i~ 186 (368)
T KOG4445|consen 115 NGQCVICLYGFASSPAFTVTACDHY-MHFACLARYLTECLTGLRQEIQDAQKERQHMKEQVEAVCPVCRERIK 186 (368)
T ss_pred CCceEEEEEeecCCCceeeehhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhHhhhhcc
Confidence 4579998865443 567899999 99999876210 1 145999999873
No 86
>PF10272 Tmpp129: Putative transmembrane protein precursor; InterPro: IPR018801 This entry consists of proteins conserved from worms to humans. They are purported to be transmembrane protein-precursors but their function is unknown.
Probab=87.15 E-value=0.7 Score=46.88 Aligned_cols=29 Identities=31% Similarity=0.619 Sum_probs=21.6
Q ss_pred CCCcccCHHHHHHHhc-------------cCCCCccccccccc
Q 046132 321 CRHMCMCSGCAKVLRF-------------QTNRCPICRQPVER 350 (361)
Q Consensus 321 CgH~cfC~~Ca~~l~~-------------qs~~CPICR~~I~~ 350 (361)
||=| -|.+|+.+|.- .+..||.||+.+.-
T Consensus 311 CRPm-WC~~Cm~kwFasrQd~~~~~~Wl~~~~~CPtCRa~FCi 352 (358)
T PF10272_consen 311 CRPM-WCLECMGKWFASRQDQQHPETWLSGKCPCPTCRAKFCI 352 (358)
T ss_pred ccch-HHHHHHHHHhhhcCCCCChhhhhcCCCCCCCCccccee
Confidence 6666 69999988742 23569999998753
No 87
>PHA02862 5L protein; Provisional
Probab=86.66 E-value=0.64 Score=41.50 Aligned_cols=46 Identities=15% Similarity=0.330 Sum_probs=34.5
Q ss_pred CCeeeecccCCCCeEEeCCCCcc----cCHHHHHHHhccC--CCCcccccccc
Q 046132 303 GKECVICLSEPRDTTVLPCRHMC----MCSGCAKVLRFQT--NRCPICRQPVE 349 (361)
Q Consensus 303 ~~eCvICl~~~~d~vlLPCgH~c----fC~~Ca~~l~~qs--~~CPICR~~I~ 349 (361)
+..|-||++...+. +-||+... ...+|+.+|...+ ..|++|+.+..
T Consensus 2 ~diCWIC~~~~~e~-~~PC~C~GS~K~VHq~CL~~WIn~S~k~~CeLCkteY~ 53 (156)
T PHA02862 2 SDICWICNDVCDER-NNFCGCNEEYKVVHIKCMQLWINYSKKKECNLCKTKYN 53 (156)
T ss_pred CCEEEEecCcCCCC-cccccccCcchhHHHHHHHHHHhcCCCcCccCCCCeEE
Confidence 46899999987554 56777532 4789999998654 56999998764
No 88
>KOG3113 consensus Uncharacterized conserved protein [Function unknown]
Probab=85.98 E-value=0.96 Score=43.82 Aligned_cols=58 Identities=19% Similarity=0.277 Sum_probs=42.7
Q ss_pred CCCCeeeeccc----CCCCeEEeCCCCcccCHHHHHHHhccCCCCccccccccceEEEEcCCCCC
Q 046132 301 DPGKECVICLS----EPRDTTVLPCRHMCMCSGCAKVLRFQTNRCPICRQPVERLLEIKVNGPEE 361 (361)
Q Consensus 301 ~~~~eCvICl~----~~~d~vlLPCgH~cfC~~Ca~~l~~qs~~CPICR~~I~~ll~I~v~~~~~ 361 (361)
.....|.|--- ..+-.++..|||+ |=..-++.+. ...|++|.+.+..--.|-+|..+|
T Consensus 109 ~a~fiCPvtgleMng~~~F~~l~~CGcV-~SerAlKeik--as~C~~C~a~y~~~dvIvlNg~~E 170 (293)
T KOG3113|consen 109 RARFICPVTGLEMNGKYRFCALRCCGCV-FSERALKEIK--ASVCHVCGAAYQEDDVIVLNGTEE 170 (293)
T ss_pred cceeecccccceecceEEEEEEecccee-ccHHHHHHhh--hccccccCCcccccCeEeeCCCHH
Confidence 34567887653 3445678999999 8766666654 578999999998887787877553
No 89
>KOG2930 consensus SCF ubiquitin ligase, Rbx1 component [Posttranslational modification, protein turnover, chaperones]
Probab=81.75 E-value=0.76 Score=38.80 Aligned_cols=29 Identities=21% Similarity=0.330 Sum_probs=25.5
Q ss_pred EeCCCCcccCHHHHHHHhccCCCCcccccc
Q 046132 318 VLPCRHMCMCSGCAKVLRFQTNRCPICRQP 347 (361)
Q Consensus 318 lLPCgH~cfC~~Ca~~l~~qs~~CPICR~~ 347 (361)
.--|.|. |..-|+.+|..+.+.||+|.+.
T Consensus 78 WG~CNHa-FH~hCisrWlktr~vCPLdn~e 106 (114)
T KOG2930|consen 78 WGVCNHA-FHFHCISRWLKTRNVCPLDNKE 106 (114)
T ss_pred eeecchH-HHHHHHHHHHhhcCcCCCcCcc
Confidence 3459999 9999999999999999999764
No 90
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=81.43 E-value=0.65 Score=37.64 Aligned_cols=31 Identities=26% Similarity=0.667 Sum_probs=24.5
Q ss_pred CCCCeeeecccCCCC--eEEeCCCCcccCHHHHH
Q 046132 301 DPGKECVICLSEPRD--TTVLPCRHMCMCSGCAK 332 (361)
Q Consensus 301 ~~~~eCvICl~~~~d--~vlLPCgH~cfC~~Ca~ 332 (361)
+++..|.||.....+ .++.||||. ++..|++
T Consensus 76 ~~~~~C~vC~k~l~~~~f~~~p~~~v-~H~~C~~ 108 (109)
T PF10367_consen 76 TESTKCSVCGKPLGNSVFVVFPCGHV-VHYSCIK 108 (109)
T ss_pred CCCCCccCcCCcCCCceEEEeCCCeE-Eeccccc
Confidence 445679999986654 567899999 9999975
No 91
>KOG3842 consensus Adaptor protein Pellino [Signal transduction mechanisms]
Probab=81.36 E-value=1.2 Score=44.54 Aligned_cols=48 Identities=25% Similarity=0.561 Sum_probs=30.7
Q ss_pred CCCCeeeecccCC-------------------CCeEEeCCCCcccCHHHHHHHhcc----------CCCCccccccccc
Q 046132 301 DPGKECVICLSEP-------------------RDTTVLPCRHMCMCSGCAKVLRFQ----------TNRCPICRQPVER 350 (361)
Q Consensus 301 ~~~~eCvICl~~~-------------------~d~vlLPCgH~cfC~~Ca~~l~~q----------s~~CPICR~~I~~ 350 (361)
..+++|.+|+..- -+-+|-||||+ |.+=....+.+ ...||.|-+.+..
T Consensus 339 ~~~r~CPmC~~~gp~V~L~lG~E~~f~vD~G~pthaF~PCGHv--~sekt~~YWs~iplPhGT~~f~a~CPFC~~~L~g 415 (429)
T KOG3842|consen 339 QRERECPMCRVVGPYVPLWLGCEAGFYVDAGPPTHAFNPCGHV--CSEKTVKYWSQIPLPHGTHAFHAACPFCATQLAG 415 (429)
T ss_pred cccCcCCeeeeecceeeeeccccceeEecCCCcccccCCcccc--cchhhhhHhhcCcCCCccccccccCcchhhhhcc
Confidence 3467999998632 23456799999 44443333332 1469999887754
No 92
>KOG3899 consensus Uncharacterized conserved protein [Function unknown]
Probab=81.27 E-value=1.1 Score=44.21 Aligned_cols=39 Identities=31% Similarity=0.803 Sum_probs=28.2
Q ss_pred CCCCeeeecccCCCCeEEeCCCCcccCHHHHHHHh-------------ccCCCCccccccccc
Q 046132 301 DPGKECVICLSEPRDTTVLPCRHMCMCSGCAKVLR-------------FQTNRCPICRQPVER 350 (361)
Q Consensus 301 ~~~~eCvICl~~~~d~vlLPCgH~cfC~~Ca~~l~-------------~qs~~CPICR~~I~~ 350 (361)
+.+.-|.-|+ |+-+ -|.+|+..|. .++..||.||+.+.-
T Consensus 315 ~~ga~c~nc~----------crp~-wc~~cla~~f~~rq~~v~r~~~~~~~~~cp~cr~~fci 366 (381)
T KOG3899|consen 315 DIGAPCENCI----------CRPL-WCRSCLAQIFIGRQDNVYRYEYHRGSAQCPTCRKNFCI 366 (381)
T ss_pred ccCCcccccc----------cccH-HHHHHHHHHHhhcccchhHHHHHhcCCCCcchhhceEE
Confidence 3445566664 7777 7999998864 245789999998853
No 93
>COG5220 TFB3 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB3 [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]
Probab=81.19 E-value=0.49 Score=45.52 Aligned_cols=45 Identities=29% Similarity=0.751 Sum_probs=32.5
Q ss_pred CCCeeeecccCC---CCe--EEeC-CCCcccCHHHHHHHhccC-CCCc--ccccc
Q 046132 302 PGKECVICLSEP---RDT--TVLP-CRHMCMCSGCAKVLRFQT-NRCP--ICRQP 347 (361)
Q Consensus 302 ~~~eCvICl~~~---~d~--vlLP-CgH~cfC~~Ca~~l~~qs-~~CP--ICR~~ 347 (361)
.+..|.||.+.. -|+ .+-| |-|. +|.+|..++.+.. ..|| -|-.-
T Consensus 9 ~d~~CPvCksDrYLnPdik~linPECyHr-mCESCvdRIFs~GpAqCP~~gC~kI 62 (314)
T COG5220 9 EDRRCPVCKSDRYLNPDIKILINPECYHR-MCESCVDRIFSRGPAQCPYKGCGKI 62 (314)
T ss_pred hcccCCccccccccCCCeEEEECHHHHHH-HHHHHHHHHhcCCCCCCCCccHHHH
Confidence 456899998742 233 3446 9999 9999999977654 5699 88553
No 94
>KOG3799 consensus Rab3 effector RIM1 and related proteins, contain Rab3a binding domain [Intracellular trafficking, secretion, and vesicular transport]
Probab=81.13 E-value=0.44 Score=42.10 Aligned_cols=45 Identities=31% Similarity=0.819 Sum_probs=28.2
Q ss_pred CCCCeeeeccc-CCCCeEEeCCCCcc------cCHHHHHHHhccCC----CCcccccccc
Q 046132 301 DPGKECVICLS-EPRDTTVLPCRHMC------MCSGCAKVLRFQTN----RCPICRQPVE 349 (361)
Q Consensus 301 ~~~~eCvICl~-~~~d~vlLPCgH~c------fC~~Ca~~l~~qs~----~CPICR~~I~ 349 (361)
.++..|.||+. ++.|. |||.| ||..|.-++...++ .|-.||....
T Consensus 63 ~ddatC~IC~KTKFADG----~GH~C~YCq~r~CARCGGrv~lrsNKv~wvcnlc~k~q~ 118 (169)
T KOG3799|consen 63 GDDATCGICHKTKFADG----CGHNCSYCQTRFCARCGGRVSLRSNKVMWVCNLCRKQQE 118 (169)
T ss_pred CcCcchhhhhhcccccc----cCcccchhhhhHHHhcCCeeeeccCceEEeccCCcHHHH
Confidence 44578999994 44443 89986 46666555444433 3888876553
No 95
>KOG1493 consensus Anaphase-promoting complex (APC), subunit 11 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=80.38 E-value=0.5 Score=37.86 Aligned_cols=28 Identities=29% Similarity=0.624 Sum_probs=23.2
Q ss_pred CCCCcccCHHHHHHHhccC---CCCccccccc
Q 046132 320 PCRHMCMCSGCAKVLRFQT---NRCPICRQPV 348 (361)
Q Consensus 320 PCgH~cfC~~Ca~~l~~qs---~~CPICR~~I 348 (361)
-|.|+ |..-|+.+|.... ..||+||+..
T Consensus 50 ~C~h~-fh~hCI~~wl~~~tsq~~CPmcRq~~ 80 (84)
T KOG1493|consen 50 YCLHA-FHAHCILKWLNTPTSQGQCPMCRQTW 80 (84)
T ss_pred HHHHH-HHHHHHHHHhcCccccccCCcchhee
Confidence 49999 9999999987532 5699999865
No 96
>KOG3800 consensus Predicted E3 ubiquitin ligase containing RING finger, subunit of transcription/repair factor TFIIH and CDK-activating kinase assembly factor [Posttranslational modification, protein turnover, chaperones]
Probab=79.82 E-value=1.3 Score=43.50 Aligned_cols=30 Identities=23% Similarity=0.665 Sum_probs=24.1
Q ss_pred EeCCCCcccCHHHHHHHhcc-CCCCccccccc
Q 046132 318 VLPCRHMCMCSGCAKVLRFQ-TNRCPICRQPV 348 (361)
Q Consensus 318 lLPCgH~cfC~~Ca~~l~~q-s~~CPICR~~I 348 (361)
+-+|+|. +|.+|...+... ...||.|-..+
T Consensus 20 in~C~H~-lCEsCvd~iF~~g~~~CpeC~~iL 50 (300)
T KOG3800|consen 20 INECGHR-LCESCVDRIFSLGPAQCPECMVIL 50 (300)
T ss_pred eccccch-HHHHHHHHHHhcCCCCCCcccchh
Confidence 4489999 999999997654 36799996644
No 97
>PHA03247 large tegument protein UL36; Provisional
Probab=79.37 E-value=16 Score=45.52 Aligned_cols=8 Identities=38% Similarity=0.384 Sum_probs=3.4
Q ss_pred cccccCCC
Q 046132 38 RYVFAAVT 45 (361)
Q Consensus 38 ~~~~~~~~ 45 (361)
+|-.+.+.
T Consensus 2885 ~l~~P~~~ 2892 (3151)
T PHA03247 2885 RLARPAVS 2892 (3151)
T ss_pred CCCCCCCC
Confidence 44444444
No 98
>KOG2113 consensus Predicted RNA binding protein, contains KH domain [General function prediction only]
Probab=78.72 E-value=0.5 Score=47.00 Aligned_cols=53 Identities=17% Similarity=0.209 Sum_probs=43.0
Q ss_pred CCeeeecccCCCCeEEeCCCCcccCHHHHHHHhc-cCCCCccccccccceEEEE
Q 046132 303 GKECVICLSEPRDTTVLPCRHMCMCSGCAKVLRF-QTNRCPICRQPVERLLEIK 355 (361)
Q Consensus 303 ~~eCvICl~~~~d~vlLPCgH~cfC~~Ca~~l~~-qs~~CPICR~~I~~ll~I~ 355 (361)
.-.|++|+++..-.++.+|+|..||..|+..--. ....|+||...+.....|.
T Consensus 136 ti~~iqq~tnt~I~T~v~~~~~Vf~Vtg~~~nC~kra~s~eie~ta~~ra~~i~ 189 (394)
T KOG2113|consen 136 TIKRIQQFTNTYIATPVRCGEPVFCVTGAPKNCVKRARSCEIEQTAVTRAGQIH 189 (394)
T ss_pred ccchheecccceEeeeccCCCceEEEecCCcchhhhccccchhhhhhhhhhccc
Confidence 4579999999999999999999999999776533 3456999988887766664
No 99
>PF12906 RINGv: RING-variant domain; PDB: 2D8S_A 1VYX_A.
Probab=77.26 E-value=1.1 Score=32.28 Aligned_cols=39 Identities=28% Similarity=0.729 Sum_probs=24.5
Q ss_pred eeecccCCCC--eEEeCCCCcc----cCHHHHHHHhcc--CCCCccc
Q 046132 306 CVICLSEPRD--TTVLPCRHMC----MCSGCAKVLRFQ--TNRCPIC 344 (361)
Q Consensus 306 CvICl~~~~d--~vlLPCgH~c----fC~~Ca~~l~~q--s~~CPIC 344 (361)
|-||++...+ .++.||+-.. ...+|+..|... ..+|.+|
T Consensus 1 CrIC~~~~~~~~~li~pC~C~Gs~~~vH~~CL~~W~~~~~~~~C~~C 47 (47)
T PF12906_consen 1 CRICLEGEEEDEPLISPCRCKGSMKYVHRSCLERWIRESGNRKCEIC 47 (47)
T ss_dssp ETTTTEE-SSSS-EE-SSS-SSCCGSEECCHHHHHHHHHT-SB-TTT
T ss_pred CeEeCCcCCCCCceecccccCCCcchhHHHHHHHHHHhcCCCcCCCC
Confidence 7789875432 5788987432 578899999874 3669887
No 100
>KOG3579 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=74.40 E-value=1.2 Score=43.74 Aligned_cols=32 Identities=25% Similarity=0.597 Sum_probs=27.9
Q ss_pred CCeeeecccCCCCeEEeCCC----CcccCHHHHHHHh
Q 046132 303 GKECVICLSEPRDTTVLPCR----HMCMCSGCAKVLR 335 (361)
Q Consensus 303 ~~eCvICl~~~~d~vlLPCg----H~cfC~~Ca~~l~ 335 (361)
-..|.+|.++..|+-|+-|- |- ||+-|.+.-.
T Consensus 268 pLcCTLC~ERLEDTHFVQCPSVp~HK-FCFPCSResI 303 (352)
T KOG3579|consen 268 PLCCTLCHERLEDTHFVQCPSVPSHK-FCFPCSRESI 303 (352)
T ss_pred ceeehhhhhhhccCceeecCCCcccc-eecccCHHHH
Confidence 36899999999999999995 88 9999998743
No 101
>KOG4362 consensus Transcriptional regulator BRCA1 [Replication, recombination and repair; Transcription]
Probab=74.27 E-value=0.72 Score=50.17 Aligned_cols=48 Identities=27% Similarity=0.680 Sum_probs=39.2
Q ss_pred CCCeeeecccCCCCeEEeCCCCcccCHHHHHHHhcc---CCCCccccccccc
Q 046132 302 PGKECVICLSEPRDTTVLPCRHMCMCSGCAKVLRFQ---TNRCPICRQPVER 350 (361)
Q Consensus 302 ~~~eCvICl~~~~d~vlLPCgH~cfC~~Ca~~l~~q---s~~CPICR~~I~~ 350 (361)
...+|.||+....+.+.+-|.|. ||..|...+... ...|++|+..++.
T Consensus 20 k~lEc~ic~~~~~~p~~~kc~~~-~l~~~~n~~f~~~~~~~~~~lc~~~~eK 70 (684)
T KOG4362|consen 20 KILECPICLEHVKEPSLLKCDHI-FLKFCLNKLFESKKGPKQCALCKSDIEK 70 (684)
T ss_pred hhccCCceeEEeeccchhhhhHH-HHhhhhhceeeccCccccchhhhhhhhh
Confidence 34789999999999999999999 999999884433 3579999976643
No 102
>COG5183 SSM4 Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=73.99 E-value=2.6 Score=46.84 Aligned_cols=49 Identities=24% Similarity=0.537 Sum_probs=37.7
Q ss_pred CCCCeeeecccCC--CCeEEeCCCCcc----cCHHHHHHHhcc--CCCCcccccccc
Q 046132 301 DPGKECVICLSEP--RDTTVLPCRHMC----MCSGCAKVLRFQ--TNRCPICRQPVE 349 (361)
Q Consensus 301 ~~~~eCvICl~~~--~d~vlLPCgH~c----fC~~Ca~~l~~q--s~~CPICR~~I~ 349 (361)
+++..|.||..+. -+..+.||+... +..+|+-+|..- +.+|-+|..++.
T Consensus 10 ~d~~~CRICr~e~~~d~pLfhPCKC~GSIkYiH~eCL~eW~~~s~~~kCdiChy~~~ 66 (1175)
T COG5183 10 EDKRSCRICRTEDIRDDPLFHPCKCSGSIKYIHRECLMEWMECSGTKKCDICHYEYK 66 (1175)
T ss_pred ccchhceeecCCCCCCCcCcccccccchhHHHHHHHHHHHHhcCCCcceeeecceee
Confidence 4457899999754 467899998643 588999999864 367999988764
No 103
>KOG3053 consensus Uncharacterized conserved protein [Function unknown]
Probab=73.25 E-value=1.9 Score=41.91 Aligned_cols=52 Identities=23% Similarity=0.493 Sum_probs=36.7
Q ss_pred CCCCCCeeeecccCCCCeE----EeCCCCcc----cCHHHHHHHhccC--------CCCccccccccc
Q 046132 299 ANDPGKECVICLSEPRDTT----VLPCRHMC----MCSGCAKVLRFQT--------NRCPICRQPVER 350 (361)
Q Consensus 299 ~~~~~~eCvICl~~~~d~v----lLPCgH~c----fC~~Ca~~l~~qs--------~~CPICR~~I~~ 350 (361)
..+.++.|-||+....|-. +-||+... ....|+..|...+ -.||.|++...-
T Consensus 16 ~~e~eR~CWiCF~TdeDn~~a~WV~PCrCRGt~KWVHqsCL~rWiDEK~~~n~~q~V~C~QCqTEYii 83 (293)
T KOG3053|consen 16 NQELERCCWICFATDEDNRLAAWVHPCRCRGTTKWVHQSCLSRWIDEKQRGNPLQTVSCPQCQTEYII 83 (293)
T ss_pred ccccceeEEEEeccCcccchhhhcccccccCccHHHHHHHHHHHHhHHhcCCCCceeechhhcchhee
Confidence 3455689999998666643 56877432 6789999987543 359999987644
No 104
>PLN02189 cellulose synthase
Probab=73.14 E-value=3 Score=47.53 Aligned_cols=48 Identities=29% Similarity=0.673 Sum_probs=33.5
Q ss_pred CCCeeeecccCCC----CeEEeCCC---CcccCHHHHHHHhcc-CCCCccccccccc
Q 046132 302 PGKECVICLSEPR----DTTVLPCR---HMCMCSGCAKVLRFQ-TNRCPICRQPVER 350 (361)
Q Consensus 302 ~~~eCvICl~~~~----d~vlLPCg---H~cfC~~Ca~~l~~q-s~~CPICR~~I~~ 350 (361)
.+..|.||-++.. .-.++.|. -- .|..|.+-=+.. +..||.|++....
T Consensus 33 ~~~~C~iCgd~vg~~~~g~~fvaC~~C~fp-vCr~Cyeyer~eg~q~CpqCkt~Y~r 88 (1040)
T PLN02189 33 DGQVCEICGDEIGLTVDGDLFVACNECGFP-VCRPCYEYERREGTQNCPQCKTRYKR 88 (1040)
T ss_pred cCccccccccccCcCCCCCEEEeeccCCCc-cccchhhhhhhcCCccCcccCCchhh
Confidence 4568999998633 22455553 33 899999765543 4679999998874
No 105
>KOG1952 consensus Transcription factor NF-X1, contains NFX-type Zn2+-binding and R3H domains [Transcription]
Probab=72.23 E-value=2.5 Score=46.98 Aligned_cols=45 Identities=31% Similarity=0.663 Sum_probs=34.6
Q ss_pred CCCeeeecccCCCCeE-EeC---CCCcccCHHHHHHHhccC-------CCCcccccc
Q 046132 302 PGKECVICLSEPRDTT-VLP---CRHMCMCSGCAKVLRFQT-------NRCPICRQP 347 (361)
Q Consensus 302 ~~~eCvICl~~~~d~v-lLP---CgH~cfC~~Ca~~l~~qs-------~~CPICR~~ 347 (361)
...+|.||+++...+. ++. |-|+ |...|++.|..+. -+||-|+..
T Consensus 190 ~~yeCmIC~e~I~~t~~~WSC~sCYhV-FHl~CI~~WArs~ek~~~~~WrCP~Cqsv 245 (950)
T KOG1952|consen 190 RKYECMICTERIKRTAPVWSCKSCYHV-FHLNCIKKWARSSEKTGQDGWRCPACQSV 245 (950)
T ss_pred CceEEEEeeeeccccCCceecchhhhh-hhHHHHHHHHHHhhhccCccccCCcccch
Confidence 3578999999877653 555 5599 9999999997643 369999853
No 106
>PF04216 FdhE: Protein involved in formate dehydrogenase formation; InterPro: IPR006452 This family of sequences describe an accessory protein required for the assembly of formate dehydrogenase of certain proteobacteria although not present in the final complex []. The exact nature of the function of FdhE in the assembly of the complex is unknown, but considering the presence of selenocysteine, molybdopterin, iron-sulphur clusters and cytochrome b556, it is likely to be involved in the insertion of cofactors. ; GO: 0005737 cytoplasm; PDB: 2FIY_B.
Probab=71.54 E-value=0.86 Score=44.46 Aligned_cols=53 Identities=28% Similarity=0.488 Sum_probs=28.7
Q ss_pred CCCeeeecccCCCCeEEeCC-----CCcccCHHHHHHHhccCCCCccccccccceEEEE
Q 046132 302 PGKECVICLSEPRDTTVLPC-----RHMCMCSGCAKVLRFQTNRCPICRQPVERLLEIK 355 (361)
Q Consensus 302 ~~~eCvICl~~~~d~vlLPC-----gH~cfC~~Ca~~l~~qs~~CPICR~~I~~ll~I~ 355 (361)
....|.||=+.+.-.++..= ||+ +|.-|...|......||.|-..-...++..
T Consensus 171 ~~g~CPvCGs~P~~s~l~~~~~~G~R~L-~Cs~C~t~W~~~R~~Cp~Cg~~~~~~l~~~ 228 (290)
T PF04216_consen 171 QRGYCPVCGSPPVLSVLRGGEREGKRYL-HCSLCGTEWRFVRIKCPYCGNTDHEKLEYF 228 (290)
T ss_dssp T-SS-TTT---EEEEEEE------EEEE-EETTT--EEE--TTS-TTT---SS-EEE--
T ss_pred cCCcCCCCCCcCceEEEecCCCCccEEE-EcCCCCCeeeecCCCCcCCCCCCCcceeeE
Confidence 34689999998877776553 677 899999999998899999988766666554
No 107
>KOG3970 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=71.38 E-value=3.4 Score=39.61 Aligned_cols=47 Identities=28% Similarity=0.569 Sum_probs=36.4
Q ss_pred CCeeeeccc--CCCCeEEeCCCCcccCHHHHHHHhccC--------CCCccccccccc
Q 046132 303 GKECVICLS--EPRDTTVLPCRHMCMCSGCAKVLRFQT--------NRCPICRQPVER 350 (361)
Q Consensus 303 ~~eCvICl~--~~~d~vlLPCgH~cfC~~Ca~~l~~qs--------~~CPICR~~I~~ 350 (361)
..-|..|-. +..|++-|-|-|+ |.+.|+..|.-+- -.||.|..+|--
T Consensus 50 ~pNC~LC~t~La~gdt~RLvCyhl-fHW~ClneraA~lPanTAPaGyqCP~Cs~eiFP 106 (299)
T KOG3970|consen 50 NPNCRLCNTPLASGDTTRLVCYHL-FHWKCLNERAANLPANTAPAGYQCPCCSQEIFP 106 (299)
T ss_pred CCCCceeCCccccCcceeehhhhh-HHHHHhhHHHhhCCCcCCCCcccCCCCCCccCC
Confidence 345777765 5678888899999 9999999976532 469999987743
No 108
>PF04710 Pellino: Pellino; InterPro: IPR006800 Pellino is involved in Toll-like signalling pathways, and associates with the kinase domain of the Pelle Ser/Thr kinase [, , ].; PDB: 3EGB_B 3EGA_A.
Probab=70.81 E-value=1.4 Score=45.23 Aligned_cols=54 Identities=24% Similarity=0.650 Sum_probs=0.0
Q ss_pred CCCeeeecccC-------------------CCCeEEeCCCCcccCHHHHHHHhcc---------CCCCccccccccc---
Q 046132 302 PGKECVICLSE-------------------PRDTTVLPCRHMCMCSGCAKVLRFQ---------TNRCPICRQPVER--- 350 (361)
Q Consensus 302 ~~~eCvICl~~-------------------~~d~vlLPCgH~cfC~~Ca~~l~~q---------s~~CPICR~~I~~--- 350 (361)
..++|.+|+.. .-+-+|.||||+| =...++-|..- ...||.|-.++..
T Consensus 327 ~~r~CPlCr~~g~~V~L~mG~E~afyvD~~~pthaF~PCGHv~-SekTa~yWs~i~lPhGt~~f~a~CPFCa~~L~g~~g 405 (416)
T PF04710_consen 327 RSRTCPLCRQVGPYVPLWMGCEPAFYVDSGPPTHAFNPCGHVC-SEKTAKYWSQIPLPHGTHAFHAACPFCATPLDGEQG 405 (416)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccCCCccccCCceeEeeccccceeecCCCCceeeccccccc-chhhhhhhhcCCCCCCcccccccCCcccCcccCCCC
Confidence 36899999962 2234688999993 33445545432 1479999999875
Q ss_pred eEEEEc
Q 046132 351 LLEIKV 356 (361)
Q Consensus 351 ll~I~v 356 (361)
.+++.+
T Consensus 406 ~vrLiF 411 (416)
T PF04710_consen 406 YVRLIF 411 (416)
T ss_dssp ------
T ss_pred ceEEEE
Confidence 455544
No 109
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=70.47 E-value=1.1 Score=51.76 Aligned_cols=44 Identities=32% Similarity=0.775 Sum_probs=37.8
Q ss_pred CeeeecccCCC-CeEEeCCCCcccCHHHHHHHhccCCCCccccccc
Q 046132 304 KECVICLSEPR-DTTVLPCRHMCMCSGCAKVLRFQTNRCPICRQPV 348 (361)
Q Consensus 304 ~eCvICl~~~~-d~vlLPCgH~cfC~~Ca~~l~~qs~~CPICR~~I 348 (361)
..|.||++..+ -..+.-|||. +|..|...|...+..|++|...+
T Consensus 1154 ~~c~ic~dil~~~~~I~~cgh~-~c~~c~~~~l~~~s~~~~~ksi~ 1198 (1394)
T KOG0298|consen 1154 FVCEICLDILRNQGGIAGCGHE-PCCRCDELWLYASSRCPICKSIK 1198 (1394)
T ss_pred cchHHHHHHHHhcCCeeeechh-HhhhHHHHHHHHhccCcchhhhh
Confidence 58999999877 4567789999 99999999999999999997543
No 110
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=69.73 E-value=2.1 Score=47.41 Aligned_cols=50 Identities=22% Similarity=0.297 Sum_probs=35.0
Q ss_pred CCCCeeeecccCCCCe-EEeC---CCCcccCHHHHHHHhcc------CCCCccccccccce
Q 046132 301 DPGKECVICLSEPRDT-TVLP---CRHMCMCSGCAKVLRFQ------TNRCPICRQPVERL 351 (361)
Q Consensus 301 ~~~~eCvICl~~~~d~-vlLP---CgH~cfC~~Ca~~l~~q------s~~CPICR~~I~~l 351 (361)
+...+|.||++...|. -++| |+|. +|..|+..|..+ ...|+.|..-|...
T Consensus 97 ~Ss~~C~~E~S~~~ds~~i~P~~~~~~~-~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~sW 156 (1134)
T KOG0825|consen 97 DTSPVCEKEHSPDVDSSNICPVQTHVEN-QCPNCLKSCNDQLEESEKHTAHYFCEECVGSW 156 (1134)
T ss_pred cccchhheecCCcccccCcCchhhhhhh-hhhHHHHHHHHHhhccccccccccHHHHhhhh
Confidence 3445677777764443 2555 9999 999999998754 24588887766554
No 111
>TIGR01562 FdhE formate dehydrogenase accessory protein FdhE. The only sequence scoring between trusted and noise is that from Aquifex aeolicus, which shows certain structural differences from the proteobacterial forms in the alignment. However it is notable that A. aeolicus also has a sequence scoring above trusted to the alpha subunit of formate dehydrogenase (TIGR01553).
Probab=67.18 E-value=2.1 Score=42.58 Aligned_cols=54 Identities=24% Similarity=0.494 Sum_probs=38.7
Q ss_pred CCCeeeecccCCCCeEEeCC------CCcccCHHHHHHHhccCCCCccccccccceEEEEcC
Q 046132 302 PGKECVICLSEPRDTTVLPC------RHMCMCSGCAKVLRFQTNRCPICRQPVERLLEIKVN 357 (361)
Q Consensus 302 ~~~eCvICl~~~~d~vlLPC------gH~cfC~~Ca~~l~~qs~~CPICR~~I~~ll~I~v~ 357 (361)
....|.||-+.+.-.++..- ||+ .|.-|...|.+...+|+.|-.. ..+-.+.+.
T Consensus 183 ~~~~CPvCGs~P~~s~~~~~~~~~G~RyL-~CslC~teW~~~R~~C~~Cg~~-~~l~y~~~e 242 (305)
T TIGR01562 183 SRTLCPACGSPPVASMVRQGGKETGLRYL-SCSLCATEWHYVRVKCSHCEES-KHLAYLSLE 242 (305)
T ss_pred CCCcCCCCCChhhhhhhcccCCCCCceEE-EcCCCCCcccccCccCCCCCCC-CceeeEeec
Confidence 34589999998865544322 456 8999999999988999999874 333334444
No 112
>KOG4672 consensus Uncharacterized conserved low complexity protein [Function unknown]
Probab=66.82 E-value=48 Score=34.51 Aligned_cols=11 Identities=45% Similarity=0.483 Sum_probs=6.5
Q ss_pred EecCcceEEEE
Q 046132 137 NLKKESLKLEA 147 (361)
Q Consensus 137 NlrK~SLRl~~ 147 (361)
|++.|..||++
T Consensus 425 N~kaElT~~VP 435 (487)
T KOG4672|consen 425 NLKAELTRLVP 435 (487)
T ss_pred ccchHHHhhcc
Confidence 46666666654
No 113
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=65.91 E-value=1.6 Score=44.77 Aligned_cols=48 Identities=23% Similarity=0.564 Sum_probs=35.9
Q ss_pred CCCCeeeeccc----CCCCeEEeCCCCcccCHHHHHHHhccC--CCCcccccccc
Q 046132 301 DPGKECVICLS----EPRDTTVLPCRHMCMCSGCAKVLRFQT--NRCPICRQPVE 349 (361)
Q Consensus 301 ~~~~eCvICl~----~~~d~vlLPCgH~cfC~~Ca~~l~~qs--~~CPICR~~I~ 349 (361)
+.+.-|-.|-+ +....-.|||.|. |...|+.....+. .+||-||.-+.
T Consensus 363 e~~L~Cg~CGe~~Glk~e~LqALpCsHI-fH~rCl~e~L~~n~~rsCP~CrklrS 416 (518)
T KOG1941|consen 363 ETELYCGLCGESIGLKNERLQALPCSHI-FHLRCLQEILENNGTRSCPNCRKLRS 416 (518)
T ss_pred HHhhhhhhhhhhhcCCcccccccchhHH-HHHHHHHHHHHhCCCCCCccHHHHHh
Confidence 44577999976 3444557899999 9999999865543 67999995443
No 114
>KOG3161 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=62.06 E-value=3 Score=45.20 Aligned_cols=36 Identities=33% Similarity=0.790 Sum_probs=28.2
Q ss_pred CeeeecccC----CCCeEEeCCCCcccCHHHHHHHhccCCCCc
Q 046132 304 KECVICLSE----PRDTTVLPCRHMCMCSGCAKVLRFQTNRCP 342 (361)
Q Consensus 304 ~eCvICl~~----~~d~vlLPCgH~cfC~~Ca~~l~~qs~~CP 342 (361)
..|.||+.+ ....+.|-|||. .|..|++.+-.+ .||
T Consensus 12 l~c~ic~n~f~~~~~~Pvsl~cght-ic~~c~~~lyn~--scp 51 (861)
T KOG3161|consen 12 LLCDICLNLFVVQRLEPVSLQCGHT-ICGHCVQLLYNA--SCP 51 (861)
T ss_pred hhchHHHHHHHHHhcCcccccccch-HHHHHHHhHhhc--cCC
Confidence 579999754 445677789999 999999998643 677
No 115
>PF02891 zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR004181 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents MIZ-type zinc finger domains. Miz1 (Msx-interacting-zinc finger) is a zinc finger-containing protein with homology to the yeast protein, Nfi-1. Miz1 is a sequence specific DNA binding protein that can function as a positive-acting transcription factor. Miz1 binds to the homeobox protein Msx2, enhancing the specific DNA-binding ability of Msx2 []. Other proteins containing this domain include the human pias family (protein inhibitor of activated STAT protein). More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3I2D_A.
Probab=61.09 E-value=7 Score=28.43 Aligned_cols=43 Identities=28% Similarity=0.651 Sum_probs=18.7
Q ss_pred CeeeecccCCCCeE-EeCCCCcccCHHHHHHHh--ccC--CCCcccccc
Q 046132 304 KECVICLSEPRDTT-VLPCRHMCMCSGCAKVLR--FQT--NRCPICRQP 347 (361)
Q Consensus 304 ~eCvICl~~~~d~v-lLPCgH~cfC~~Ca~~l~--~qs--~~CPICR~~ 347 (361)
..|.|.....+.++ -..|.|+ -|++=..-|. .++ -.||+|.++
T Consensus 3 L~CPls~~~i~~P~Rg~~C~H~-~CFDl~~fl~~~~~~~~W~CPiC~~~ 50 (50)
T PF02891_consen 3 LRCPLSFQRIRIPVRGKNCKHL-QCFDLESFLESNQRTPKWKCPICNKP 50 (50)
T ss_dssp SB-TTTSSB-SSEEEETT--SS---EEHHHHHHHHHHS---B-TTT---
T ss_pred eeCCCCCCEEEeCccCCcCccc-ceECHHHHHHHhhccCCeECcCCcCc
Confidence 46888888777766 4569999 4543222222 112 359999864
No 116
>KOG1940 consensus Zn-finger protein [General function prediction only]
Probab=60.48 E-value=4.9 Score=39.51 Aligned_cols=41 Identities=37% Similarity=0.753 Sum_probs=33.9
Q ss_pred eeeecccC----CCCeEEeCCCCcccCHHHHHHHhccCCCCccccc
Q 046132 305 ECVICLSE----PRDTTVLPCRHMCMCSGCAKVLRFQTNRCPICRQ 346 (361)
Q Consensus 305 eCvICl~~----~~d~vlLPCgH~cfC~~Ca~~l~~qs~~CPICR~ 346 (361)
.|.||.+. ..++.+++|||. +...|.+......-+||+|-.
T Consensus 160 ncPic~e~l~~s~~~~~~~~CgH~-~h~~cf~e~~~~~y~CP~C~~ 204 (276)
T KOG1940|consen 160 NCPICKEYLFLSFEDAGVLKCGHY-MHSRCFEEMICEGYTCPICSK 204 (276)
T ss_pred CCchhHHHhccccccCCccCcccc-hHHHHHHHHhccCCCCCcccc
Confidence 39999874 445678999999 889999997766688999977
No 117
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=60.29 E-value=5.6 Score=39.91 Aligned_cols=46 Identities=39% Similarity=0.887 Sum_probs=36.6
Q ss_pred CeeeecccCC--CCeEEeC--CCCcccCHHHHHHHhccCCCCccccccccc
Q 046132 304 KECVICLSEP--RDTTVLP--CRHMCMCSGCAKVLRFQTNRCPICRQPVER 350 (361)
Q Consensus 304 ~eCvICl~~~--~d~vlLP--CgH~cfC~~Ca~~l~~qs~~CPICR~~I~~ 350 (361)
..|.||.+.. .+..++| |++. +|..|.........+|++||.+...
T Consensus 250 ~s~p~~~~~~~~~d~~~lP~~~~~~-~~l~~~~t~~~~~~~~~~~rk~~~~ 299 (327)
T KOG2068|consen 250 PSCPICYEDLDLTDSNFLPCPCGFR-LCLFCHKTISDGDGRCPGCRKPYER 299 (327)
T ss_pred CCCCCCCCccccccccccccccccc-chhhhhhcccccCCCCCccCCcccc
Confidence 6899999843 4444555 8899 9999999988777899999987654
No 118
>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=59.55 E-value=7.5 Score=39.88 Aligned_cols=44 Identities=18% Similarity=0.388 Sum_probs=32.2
Q ss_pred CeeeecccCCC---CeEEeCCCCcccCHHHHHHHhccC---CCCccccccc
Q 046132 304 KECVICLSEPR---DTTVLPCRHMCMCSGCAKVLRFQT---NRCPICRQPV 348 (361)
Q Consensus 304 ~eCvICl~~~~---d~vlLPCgH~cfC~~Ca~~l~~qs---~~CPICR~~I 348 (361)
..|.|=-+... -++.|.|||+ .|.+-+.+|.... -+||-|-...
T Consensus 335 F~CPVlKeqtsdeNPPm~L~CGHV-ISkdAlnrLS~ng~~sfKCPYCP~e~ 384 (394)
T KOG2817|consen 335 FICPVLKEQTSDENPPMMLICGHV-ISKDALNRLSKNGSQSFKCPYCPVEQ 384 (394)
T ss_pred eecccchhhccCCCCCeeeeccce-ecHHHHHHHhhCCCeeeeCCCCCccc
Confidence 46777554333 3678899999 9999999987654 4799995543
No 119
>PRK03564 formate dehydrogenase accessory protein FdhE; Provisional
Probab=54.15 E-value=5.3 Score=39.86 Aligned_cols=44 Identities=25% Similarity=0.501 Sum_probs=34.8
Q ss_pred CCCeeeecccCCCCeEEeC-----CCCcccCHHHHHHHhccCCCCccccc
Q 046132 302 PGKECVICLSEPRDTTVLP-----CRHMCMCSGCAKVLRFQTNRCPICRQ 346 (361)
Q Consensus 302 ~~~eCvICl~~~~d~vlLP-----CgH~cfC~~Ca~~l~~qs~~CPICR~ 346 (361)
....|.||-+.+.-.++.. =||+ .|.-|...|.+...+|+.|-.
T Consensus 186 ~~~~CPvCGs~P~~s~v~~~~~~G~RyL-~CslC~teW~~~R~~C~~Cg~ 234 (309)
T PRK03564 186 QRQFCPVCGSMPVSSVVQIGTTQGLRYL-HCNLCESEWHVVRVKCSNCEQ 234 (309)
T ss_pred CCCCCCCCCCcchhheeeccCCCCceEE-EcCCCCCcccccCccCCCCCC
Confidence 4578999999886554421 2456 899999999999899999976
No 120
>KOG1609 consensus Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=51.08 E-value=12 Score=35.85 Aligned_cols=48 Identities=23% Similarity=0.477 Sum_probs=35.1
Q ss_pred CCeeeecccCCCC----eEEeCCCCcc----cCHHHHHHHhc--cCCCCccccccccc
Q 046132 303 GKECVICLSEPRD----TTVLPCRHMC----MCSGCAKVLRF--QTNRCPICRQPVER 350 (361)
Q Consensus 303 ~~eCvICl~~~~d----~vlLPCgH~c----fC~~Ca~~l~~--qs~~CPICR~~I~~ 350 (361)
+..|-||+.+.-. .++.||.-.. ....|+..|.. .+..|-+|......
T Consensus 78 ~~~cRIc~~~~~~~~~~~l~~pC~C~g~l~~vH~~cl~~W~~~~~~~~CeiC~~~~~~ 135 (323)
T KOG1609|consen 78 GPICRICHEEDEESNGLLLISPCSCKGSLAYVHRSCLEKWFSIKGNITCEICKSFFIN 135 (323)
T ss_pred CCcEEEEecccccccccccccCccccCcHHHHHHHHHHhhhccccCeeeeccccccee
Confidence 4789999986543 4677887332 47899999987 44679999876544
No 121
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=50.62 E-value=6 Score=40.50 Aligned_cols=31 Identities=42% Similarity=0.978 Sum_probs=22.9
Q ss_pred CCCeeeecccCCCCe----EEeCCCCcccCHHHHHH
Q 046132 302 PGKECVICLSEPRDT----TVLPCRHMCMCSGCAKV 333 (361)
Q Consensus 302 ~~~eCvICl~~~~d~----vlLPCgH~cfC~~Ca~~ 333 (361)
...+|.||+.+.... .++-|+|. ||..|.+.
T Consensus 145 ~~~~C~iC~~e~~~~~~~f~~~~C~H~-fC~~C~k~ 179 (384)
T KOG1812|consen 145 PKEECGICFVEDPEAEDMFSVLKCGHR-FCKDCVKQ 179 (384)
T ss_pred ccccCccCccccccHhhhHHHhcccch-hhhHHhHH
Confidence 457899999433322 25679999 99999986
No 122
>PF12868 DUF3824: Domain of unknwon function (DUF3824); InterPro: IPR024436 This repeating domain is proline-rich but its function is unknown.
Probab=47.69 E-value=1.6e+02 Score=26.05 Aligned_cols=6 Identities=50% Similarity=1.270 Sum_probs=2.4
Q ss_pred CCCCCC
Q 046132 73 YPPGGY 78 (361)
Q Consensus 73 ~~~~~~ 78 (361)
|+...|
T Consensus 97 Y~PadY 102 (137)
T PF12868_consen 97 YNPADY 102 (137)
T ss_pred CCcccC
Confidence 433334
No 123
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=45.23 E-value=17 Score=35.41 Aligned_cols=32 Identities=19% Similarity=0.233 Sum_probs=28.8
Q ss_pred CCCCeeeecccCCCCeEEeCCCCcccCHHHHHH
Q 046132 301 DPGKECVICLSEPRDTTVLPCRHMCMCSGCAKV 333 (361)
Q Consensus 301 ~~~~eCvICl~~~~d~vlLPCgH~cfC~~Ca~~ 333 (361)
..-..|..||.-.+|+++.+=||+ ||.+|+..
T Consensus 41 K~FdcCsLtLqPc~dPvit~~Gyl-fdrEaILe 72 (303)
T KOG3039|consen 41 KPFDCCSLTLQPCRDPVITPDGYL-FDREAILE 72 (303)
T ss_pred CCcceeeeecccccCCccCCCCee-eeHHHHHH
Confidence 345689999999999999999999 99999976
No 124
>KOG0801 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=42.82 E-value=12 Score=34.15 Aligned_cols=22 Identities=55% Similarity=1.022 Sum_probs=14.8
Q ss_pred CCCCeeeecccCCC--Ce-EEeCCC
Q 046132 301 DPGKECVICLSEPR--DT-TVLPCR 322 (361)
Q Consensus 301 ~~~~eCvICl~~~~--d~-vlLPCg 322 (361)
++..||+||+++.. |+ .-|||-
T Consensus 175 ddkGECvICLEdL~~GdtIARLPCL 199 (205)
T KOG0801|consen 175 DDKGECVICLEDLEAGDTIARLPCL 199 (205)
T ss_pred ccCCcEEEEhhhccCCCceeccceE
Confidence 45679999998543 43 457773
No 125
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=41.74 E-value=23 Score=39.35 Aligned_cols=39 Identities=23% Similarity=0.381 Sum_probs=34.0
Q ss_pred CeeeecccCCCCeEEeC--CCCcccCHHHHHHHhccCCCCcc
Q 046132 304 KECVICLSEPRDTTVLP--CRHMCMCSGCAKVLRFQTNRCPI 343 (361)
Q Consensus 304 ~eCvICl~~~~d~vlLP--CgH~cfC~~Ca~~l~~qs~~CPI 343 (361)
..|+||....+...+.. |+|. ...+|+..|......|+.
T Consensus 780 ~~CtVC~~vi~G~~~~c~~C~H~-gH~sh~~sw~~~~s~ca~ 820 (839)
T KOG0269|consen 780 AKCTVCDLVIRGVDVWCQVCGHG-GHDSHLKSWFFKASPCAK 820 (839)
T ss_pred cCceeecceeeeeEeeccccccc-ccHHHHHHHHhcCCCCcc
Confidence 47999998888887776 9998 999999999998888877
No 126
>TIGR00622 ssl1 transcription factor ssl1. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=41.74 E-value=22 Score=30.46 Aligned_cols=41 Identities=20% Similarity=0.549 Sum_probs=28.6
Q ss_pred CeeeecccCCCCe--------------EEeCCCCcccCHHHHHHHhccCCCCcccc
Q 046132 304 KECVICLSEPRDT--------------TVLPCRHMCMCSGCAKVLRFQTNRCPICR 345 (361)
Q Consensus 304 ~eCvICl~~~~d~--------------vlLPCgH~cfC~~Ca~~l~~qs~~CPICR 345 (361)
..|.-|+....+. .---|.+. ||.+|..-+-..-..||.|.
T Consensus 56 ~~C~~C~~~f~~~~~~~~~~~~~~~~y~C~~C~~~-FC~dCD~fiHe~Lh~CPGC~ 110 (112)
T TIGR00622 56 RFCFGCQGPFPKPPVSPFDELKDSHRYVCAVCKNV-FCVDCDVFVHESLHCCPGCI 110 (112)
T ss_pred CcccCcCCCCCCcccccccccccccceeCCCCCCc-cccccchhhhhhccCCcCCC
Confidence 4577777654332 13357888 99999887766667899996
No 127
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=40.54 E-value=8.1 Score=43.22 Aligned_cols=46 Identities=17% Similarity=0.515 Sum_probs=34.9
Q ss_pred CeeeecccCCCCe-EEeCCCCcccCHHHHHHHhccCCCCccccccccceEE
Q 046132 304 KECVICLSEPRDT-TVLPCRHMCMCSGCAKVLRFQTNRCPICRQPVERLLE 353 (361)
Q Consensus 304 ~eCvICl~~~~d~-vlLPCgH~cfC~~Ca~~l~~qs~~CPICR~~I~~ll~ 353 (361)
..|..|-..-.-+ |-.-|||. +...|+. .....||-|+...++.++
T Consensus 841 skCs~C~~~LdlP~VhF~CgHs-yHqhC~e---~~~~~CP~C~~e~~~~m~ 887 (933)
T KOG2114|consen 841 SKCSACEGTLDLPFVHFLCGHS-YHQHCLE---DKEDKCPKCLPELRGVMD 887 (933)
T ss_pred eeecccCCccccceeeeecccH-HHHHhhc---cCcccCCccchhhhhhHH
Confidence 4799998755544 55679999 9999988 344689999986665544
No 128
>PF08746 zf-RING-like: RING-like domain; InterPro: IPR014857 This is a zinc finger domain that is related to the C3HC4 RING finger domain (IPR001841 from INTERPRO). ; PDB: 3NW0_A 2CT0_A.
Probab=39.97 E-value=27 Score=24.58 Aligned_cols=38 Identities=21% Similarity=0.503 Sum_probs=17.4
Q ss_pred eeecccCCCCeEEeC---CCCcccCHHHHHHHhccCC--CCccc
Q 046132 306 CVICLSEPRDTTVLP---CRHMCMCSGCAKVLRFQTN--RCPIC 344 (361)
Q Consensus 306 CvICl~~~~d~vlLP---CgH~cfC~~Ca~~l~~qs~--~CPIC 344 (361)
|.+|.+-....+.=+ |+=. +...|++..+.... +||.|
T Consensus 1 C~~C~~iv~~G~~C~~~~C~~r-~H~~C~~~y~r~~~~~~CP~C 43 (43)
T PF08746_consen 1 CEACKEIVTQGQRCSNRDCNVR-LHDDCFKKYFRHRSNPKCPNC 43 (43)
T ss_dssp -TTT-SB-SSSEE-SS--S--E-E-HHHHHHHTTT-SS-B-TTT
T ss_pred CcccchhHeeeccCCCCccCch-HHHHHHHHHHhcCCCCCCcCC
Confidence 444544433333322 5545 78899999655433 69987
No 129
>KOG1815 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=39.44 E-value=15 Score=38.06 Aligned_cols=49 Identities=22% Similarity=0.377 Sum_probs=35.3
Q ss_pred CCCeeeecccCCCC-eEEeCCCCcccCHHHHHHHhccC--------CCC--ccccccccce
Q 046132 302 PGKECVICLSEPRD-TTVLPCRHMCMCSGCAKVLRFQT--------NRC--PICRQPVERL 351 (361)
Q Consensus 302 ~~~eCvICl~~~~d-~vlLPCgH~cfC~~Ca~~l~~qs--------~~C--PICR~~I~~l 351 (361)
...+|-||.+.... .+.+.|+|. ||..|.......+ .+| .-|++.+...
T Consensus 69 ~~~~c~ic~~~~~~~~~~~~c~H~-~c~~cw~~yl~~kI~~~~~~~i~cp~~~C~a~v~~~ 128 (444)
T KOG1815|consen 69 GDVQCGICVESYDGEIIGLGCGHP-FCPPCWTGYLGTKIHEGEEAKIKCPAHGCPALVGED 128 (444)
T ss_pred ccccCCcccCCCcchhhhcCCCcH-HHHHHHHHHhhheeeccccccccCCCCCccccCCCc
Confidence 45789999998885 888899999 9999998843221 134 4577766543
No 130
>KOG2807 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit SSL1 [Transcription; Replication, recombination and repair]
Probab=39.35 E-value=25 Score=35.54 Aligned_cols=43 Identities=21% Similarity=0.631 Sum_probs=31.7
Q ss_pred CCCeeeecccCCCCe---EEeCCCCcccCHHHHHHHhccCCCCcccc
Q 046132 302 PGKECVICLSEPRDT---TVLPCRHMCMCSGCAKVLRFQTNRCPICR 345 (361)
Q Consensus 302 ~~~eCvICl~~~~d~---vlLPCgH~cfC~~Ca~~l~~qs~~CPICR 345 (361)
..+.|-.|.++..+. ..-.|.+. ||.+|-.-+-.+-..||-|.
T Consensus 329 ~~~~Cf~C~~~~~~~~~y~C~~Ck~~-FCldCDv~iHesLh~CpgCe 374 (378)
T KOG2807|consen 329 GSRFCFACQGELLSSGRYRCESCKNV-FCLDCDVFIHESLHNCPGCE 374 (378)
T ss_pred CCcceeeeccccCCCCcEEchhccce-eeccchHHHHhhhhcCCCcC
Confidence 445699997665553 34468899 99999876655557899996
No 131
>KOG2231 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=38.76 E-value=2.8 Score=45.70 Aligned_cols=50 Identities=22% Similarity=0.590 Sum_probs=36.2
Q ss_pred CCCCCeeeeccc-CCCCeEEeCCCCcccCHHHHHHHh--ccCCCCccccccccce
Q 046132 300 NDPGKECVICLS-EPRDTTVLPCRHMCMCSGCAKVLR--FQTNRCPICRQPVERL 351 (361)
Q Consensus 300 ~~~~~eCvICl~-~~~d~vlLPCgH~cfC~~Ca~~l~--~qs~~CPICR~~I~~l 351 (361)
.+.+..|+||++ ...-+.+..|.|. +|..|....+ +..+.|++| ..+..+
T Consensus 75 ~~~e~~~~if~~d~~~y~~~~~~~~~-~C~~C~~~~~~~~~~~~~~~c-~~~~s~ 127 (669)
T KOG2231|consen 75 DEHEDTCVIFFADKLTYTKLEACLHH-SCHICDRRFRALYNKKECLHC-TEFKSV 127 (669)
T ss_pred ccccceeeeeeccccHHHHHHHHHhh-hcCccccchhhhcccCCCccc-cchhHH
Confidence 345578999954 4445567889998 9999998753 345779999 665554
No 132
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=37.64 E-value=22 Score=39.66 Aligned_cols=39 Identities=23% Similarity=0.433 Sum_probs=28.6
Q ss_pred CeeeecccCCCC--eEEeCCCCcccCHHHHHHHhccCCCCcc
Q 046132 304 KECVICLSEPRD--TTVLPCRHMCMCSGCAKVLRFQTNRCPI 343 (361)
Q Consensus 304 ~eCvICl~~~~d--~vlLPCgH~cfC~~Ca~~l~~qs~~CPI 343 (361)
..|.||.-..+. .+..-|+|+ +..+|+..|......||-
T Consensus 1029 ~~C~~C~l~V~gss~~Cg~C~Hv-~H~sc~~eWf~~gd~Cps 1069 (1081)
T KOG0309|consen 1029 FQCAICHLAVRGSSNFCGTCGHV-GHTSCMMEWFRTGDVCPS 1069 (1081)
T ss_pred eeeeeEeeEeeccchhhcccccc-ccHHHHHHHHhcCCcCCC
Confidence 346666544333 345679999 999999999988777773
No 133
>COG4306 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=37.15 E-value=17 Score=31.94 Aligned_cols=25 Identities=28% Similarity=0.749 Sum_probs=19.7
Q ss_pred cCHHHHHHHhccCCCCccccccccceEE
Q 046132 326 MCSGCAKVLRFQTNRCPICRQPVERLLE 353 (361)
Q Consensus 326 fC~~Ca~~l~~qs~~CPICR~~I~~ll~ 353 (361)
||+.|...-. ..||+|.++|.+-..
T Consensus 30 fcskcgeati---~qcp~csasirgd~~ 54 (160)
T COG4306 30 FCSKCGEATI---TQCPICSASIRGDYY 54 (160)
T ss_pred HHhhhchHHH---hcCCccCCcccccce
Confidence 8999988744 369999999987543
No 134
>KOG3268 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=36.97 E-value=16 Score=33.95 Aligned_cols=48 Identities=27% Similarity=0.574 Sum_probs=34.4
Q ss_pred CCCCeeeecccCCCCeEE-------eCCCCcccCHHHHHHHhc------cC-----CCCcccccccc
Q 046132 301 DPGKECVICLSEPRDTTV-------LPCRHMCMCSGCAKVLRF------QT-----NRCPICRQPVE 349 (361)
Q Consensus 301 ~~~~eCvICl~~~~d~vl-------LPCgH~cfC~~Ca~~l~~------qs-----~~CPICR~~I~ 349 (361)
+.-..|-||+.-.-+.++ ..||-- |..-|+..|.+ |+ ..||.|..+|.
T Consensus 163 d~~~~cgicyayqldGTipDqtCdN~qCgkp-FHqiCL~dWLRgilTsRQSFdiiFGeCPYCS~Pia 228 (234)
T KOG3268|consen 163 DELGACGICYAYQLDGTIPDQTCDNIQCGKP-FHQICLTDWLRGILTSRQSFDIIFGECPYCSDPIA 228 (234)
T ss_pred hhhhcccceeeeecCCccccccccccccCCc-HHHHHHHHHHHHHhhccceeeeeeccCCCCCCcce
Confidence 344679999865444332 469988 99999999864 22 56999988775
No 135
>PF12868 DUF3824: Domain of unknwon function (DUF3824); InterPro: IPR024436 This repeating domain is proline-rich but its function is unknown.
Probab=36.16 E-value=82 Score=27.89 Aligned_cols=9 Identities=56% Similarity=1.597 Sum_probs=3.8
Q ss_pred CCCCCCCCC
Q 046132 75 PGGYYPPPP 83 (361)
Q Consensus 75 ~~~~~ppp~ 83 (361)
-.+||++|+
T Consensus 75 ~~n~~ppPP 83 (137)
T PF12868_consen 75 NSNYFPPPP 83 (137)
T ss_pred ccccCCCCC
Confidence 344444443
No 136
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=35.95 E-value=4.9e+02 Score=26.90 Aligned_cols=11 Identities=18% Similarity=0.241 Sum_probs=5.0
Q ss_pred CCccchhhhhc
Q 046132 207 FSMFEETELLK 217 (361)
Q Consensus 207 ~~~~~~~eL~~ 217 (361)
+|.-|-+|+.+
T Consensus 357 lSeAEFEdiM~ 367 (498)
T KOG4849|consen 357 LSEAEFEDIMT 367 (498)
T ss_pred chHHHHHHHHh
Confidence 34444444444
No 137
>PF14569 zf-UDP: Zinc-binding RING-finger; PDB: 1WEO_A.
Probab=35.58 E-value=26 Score=28.29 Aligned_cols=48 Identities=27% Similarity=0.607 Sum_probs=18.8
Q ss_pred CCCeeeecccCCCCe----EEeC---CCCcccCHHHHHHHh-ccCCCCccccccccc
Q 046132 302 PGKECVICLSEPRDT----TVLP---CRHMCMCSGCAKVLR-FQTNRCPICRQPVER 350 (361)
Q Consensus 302 ~~~eCvICl~~~~d~----vlLP---CgH~cfC~~Ca~~l~-~qs~~CPICR~~I~~ 350 (361)
++..|.||-+..-.+ +|+- |+-- .|..|.+-=+ .-...||.|++....
T Consensus 8 ~~qiCqiCGD~VGl~~~Ge~FVAC~eC~fP-vCr~CyEYErkeg~q~CpqCkt~ykr 63 (80)
T PF14569_consen 8 NGQICQICGDDVGLTENGEVFVACHECAFP-VCRPCYEYERKEGNQVCPQCKTRYKR 63 (80)
T ss_dssp SS-B-SSS--B--B-SSSSB--S-SSS------HHHHHHHHHTS-SB-TTT--B---
T ss_pred CCcccccccCccccCCCCCEEEEEcccCCc-cchhHHHHHhhcCcccccccCCCccc
Confidence 456899998743321 3444 4444 6999988643 345779999987754
No 138
>PF10764 Gin: Inhibitor of sigma-G Gin; InterPro: IPR019700 Gin allows sigma-F to delay late forespore transcription by preventing sigma-G to take over before the cell has reached a critical stage of development. Gin is also known as CsfB [].
Probab=33.97 E-value=43 Score=24.12 Aligned_cols=31 Identities=26% Similarity=0.642 Sum_probs=23.9
Q ss_pred eeeecccCCCCeEEeCCCCcccCHHHHHHHhcc
Q 046132 305 ECVICLSEPRDTTVLPCRHMCMCSGCAKVLRFQ 337 (361)
Q Consensus 305 eCvICl~~~~d~vlLPCgH~cfC~~Ca~~l~~q 337 (361)
.|.||-....+.+.+ .+.. +|.+|-+.+...
T Consensus 1 ~CiiC~~~~~~GI~I-~~~f-IC~~CE~~iv~~ 31 (46)
T PF10764_consen 1 KCIICGKEKEEGIHI-YGKF-ICSDCEKEIVNT 31 (46)
T ss_pred CeEeCCCcCCCCEEE-ECeE-ehHHHHHHhccC
Confidence 399999888875443 5788 999999987643
No 139
>KOG4218 consensus Nuclear hormone receptor betaFTZ-F1 [Transcription]
Probab=33.52 E-value=27 Score=35.62 Aligned_cols=29 Identities=21% Similarity=0.531 Sum_probs=17.4
Q ss_pred CCCCCeeeecccCCCCeEEeCCCCcccCHHHHH
Q 046132 300 NDPGKECVICLSEPRDTTVLPCRHMCMCSGCAK 332 (361)
Q Consensus 300 ~~~~~eCvICl~~~~d~vlLPCgH~cfC~~Ca~ 332 (361)
++.+..|.||-++....-. |-+ .|.+|--
T Consensus 12 edl~ElCPVCGDkVSGYHY---GLL-TCESCKG 40 (475)
T KOG4218|consen 12 EDLGELCPVCGDKVSGYHY---GLL-TCESCKG 40 (475)
T ss_pred cccccccccccCcccccee---eee-ehhhhhh
Confidence 3456789999987765421 112 5666643
No 140
>PF07975 C1_4: TFIIH C1-like domain; InterPro: IPR004595 All proteins in this domain for which functions are known are components of the TFIIH complex which is involved in the initiation of transcription and nucleotide excision repair. It includes the yeast transcription factor Ssl1 (Suppressor of stem-loop protein 1) that is essential for translation initiation and affects UV resistance. The C-terminal region is essential for transcription activity. This regions binds three zinc atoms through two independent domain. The first contains a C4 zinc finger motif, whereas the second is characterised by a CX(2)CX(2-4)FCADCD motif. The solution structure of the second C-terminal domain revealed homology with the regulatory domain of protein kinase C [].; GO: 0006281 DNA repair, 0005634 nucleus; PDB: 1Z60_A.
Probab=33.38 E-value=26 Score=25.93 Aligned_cols=25 Identities=24% Similarity=0.809 Sum_probs=15.6
Q ss_pred CCCCcccCHHHHHHHhccCCCCcccc
Q 046132 320 PCRHMCMCSGCAKVLRFQTNRCPICR 345 (361)
Q Consensus 320 PCgH~cfC~~Ca~~l~~qs~~CPICR 345 (361)
-|++. ||.+|-.-+-.+-..||-|-
T Consensus 26 ~C~~~-FC~dCD~fiHE~LH~CPGC~ 50 (51)
T PF07975_consen 26 KCKNH-FCIDCDVFIHETLHNCPGCE 50 (51)
T ss_dssp TTT---B-HHHHHTTTTTS-SSSTT-
T ss_pred CCCCc-cccCcChhhhccccCCcCCC
Confidence 37788 99999876655567899994
No 141
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=32.13 E-value=24 Score=39.86 Aligned_cols=32 Identities=25% Similarity=0.554 Sum_probs=25.3
Q ss_pred CCCCeeeecccC--CCCeEEeCCCCcccCHHHHHH
Q 046132 301 DPGKECVICLSE--PRDTTVLPCRHMCMCSGCAKV 333 (361)
Q Consensus 301 ~~~~eCvICl~~--~~d~vlLPCgH~cfC~~Ca~~ 333 (361)
+.+..|-+|... .+--.+.||||. |.++|+..
T Consensus 815 ep~d~C~~C~~~ll~~pF~vf~CgH~-FH~~Cl~~ 848 (911)
T KOG2034|consen 815 EPQDSCDHCGRPLLIKPFYVFPCGHC-FHRDCLIR 848 (911)
T ss_pred cCccchHHhcchhhcCcceeeeccch-HHHHHHHH
Confidence 456789999864 334567899999 99999976
No 142
>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=31.74 E-value=3.4e+02 Score=27.78 Aligned_cols=27 Identities=26% Similarity=0.267 Sum_probs=20.8
Q ss_pred ccceeeeEeeceEecCcceEEEEcCCC
Q 046132 125 EHQKAVTIRNDVNLKKESLKLEADEEN 151 (361)
Q Consensus 125 e~q~t~tIrn~VNlrK~SLRl~~~~~~ 151 (361)
.|...++++.+|+++|+|++++....+
T Consensus 78 ~h~~~~~~~~l~~~r~~s~~~~~~~~~ 104 (349)
T KOG4265|consen 78 SHAPIRPLIDLVNYRKPSLLLVCAPPD 104 (349)
T ss_pred ccccccchhhcccccccccceEecCCC
Confidence 355667788899999999988875443
No 143
>PF04710 Pellino: Pellino; InterPro: IPR006800 Pellino is involved in Toll-like signalling pathways, and associates with the kinase domain of the Pelle Ser/Thr kinase [, , ].; PDB: 3EGB_B 3EGA_A.
Probab=31.07 E-value=16 Score=37.65 Aligned_cols=36 Identities=25% Similarity=0.492 Sum_probs=0.0
Q ss_pred eEEeCCCCcccCHHHHHHHhc------cCCCCccccccccceEEEEc
Q 046132 316 TTVLPCRHMCMCSGCAKVLRF------QTNRCPICRQPVERLLEIKV 356 (361)
Q Consensus 316 ~vlLPCgH~cfC~~Ca~~l~~------qs~~CPICR~~I~~ll~I~v 356 (361)
-+.|-|||+ .= ...|-. ....||+||+ +..++.+++
T Consensus 304 ~VYl~CGHV-hG---~h~Wg~~~~~~~~~r~CPlCr~-~g~~V~L~m 345 (416)
T PF04710_consen 304 WVYLNCGHV-HG---YHNWGQDSDRDPRSRTCPLCRQ-VGPYVPLWM 345 (416)
T ss_dssp -----------------------------------------------
T ss_pred eeeccccce-ee---ecccccccccccccccCCCccc-cCCceeEee
Confidence 467899997 21 122321 2467999987 445555544
No 144
>PF10083 DUF2321: Uncharacterized protein conserved in bacteria (DUF2321); InterPro: IPR016891 This entry is represented by Bacteriophage 'Lactobacillus prophage Lj928', Orf-Ljo1454. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=31.00 E-value=26 Score=31.74 Aligned_cols=27 Identities=30% Similarity=0.717 Sum_probs=21.5
Q ss_pred CCcccCHHHHHHHhccCCCCccccccccceE
Q 046132 322 RHMCMCSGCAKVLRFQTNRCPICRQPVERLL 352 (361)
Q Consensus 322 gH~cfC~~Ca~~l~~qs~~CPICR~~I~~ll 352 (361)
++. ||..|..... ..||.|..+|.+..
T Consensus 27 ~~~-fC~kCG~~tI---~~Cp~C~~~IrG~y 53 (158)
T PF10083_consen 27 REK-FCSKCGAKTI---TSCPNCSTPIRGDY 53 (158)
T ss_pred HHH-HHHHhhHHHH---HHCcCCCCCCCCce
Confidence 344 9999999865 47999999998753
No 145
>PF13240 zinc_ribbon_2: zinc-ribbon domain
Probab=30.85 E-value=9.2 Score=23.54 Aligned_cols=22 Identities=27% Similarity=0.818 Sum_probs=12.9
Q ss_pred cCHHHHHHHhccCCCCcccccc
Q 046132 326 MCSGCAKVLRFQTNRCPICRQP 347 (361)
Q Consensus 326 fC~~Ca~~l~~qs~~CPICR~~ 347 (361)
+|..|...+......|+.|-++
T Consensus 1 ~Cp~CG~~~~~~~~fC~~CG~~ 22 (23)
T PF13240_consen 1 YCPNCGAEIEDDAKFCPNCGTP 22 (23)
T ss_pred CCcccCCCCCCcCcchhhhCCc
Confidence 3555555555555667777554
No 146
>PLN02638 cellulose synthase A (UDP-forming), catalytic subunit
Probab=29.62 E-value=63 Score=37.46 Aligned_cols=48 Identities=27% Similarity=0.645 Sum_probs=32.7
Q ss_pred CCCeeeecccCCCCe----EEeCC---CCcccCHHHHHHHhc-cCCCCccccccccc
Q 046132 302 PGKECVICLSEPRDT----TVLPC---RHMCMCSGCAKVLRF-QTNRCPICRQPVER 350 (361)
Q Consensus 302 ~~~eCvICl~~~~d~----vlLPC---gH~cfC~~Ca~~l~~-qs~~CPICR~~I~~ 350 (361)
++..|.||-++.-.+ .++-| +-- .|..|.+-=+. -+..||.|++....
T Consensus 16 ~~qiCqICGD~vg~~~~Ge~FVAC~eC~FP-VCrpCYEYEr~eG~q~CPqCktrYkr 71 (1079)
T PLN02638 16 GGQVCQICGDNVGKTVDGEPFVACDVCAFP-VCRPCYEYERKDGNQSCPQCKTKYKR 71 (1079)
T ss_pred CCceeeecccccCcCCCCCEEEEeccCCCc-cccchhhhhhhcCCccCCccCCchhh
Confidence 456899999864332 34444 333 79999976444 35679999998874
No 147
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=28.41 E-value=7.8 Score=37.50 Aligned_cols=44 Identities=30% Similarity=0.630 Sum_probs=33.4
Q ss_pred CCeeeecccCCC------CeEEeC--------CCCcccCHHHHHHHhccC-CCCcccccc
Q 046132 303 GKECVICLSEPR------DTTVLP--------CRHMCMCSGCAKVLRFQT-NRCPICRQP 347 (361)
Q Consensus 303 ~~eCvICl~~~~------d~vlLP--------CgH~cfC~~Ca~~l~~qs-~~CPICR~~ 347 (361)
...|-||..... ...++. |+|. +|.+|+.....+. ..||.||..
T Consensus 207 ~~~c~ic~~~~~~n~~~~~p~vl~~~~~~~~~c~ht-lc~~c~~~~l~~~~~~cp~~~~~ 265 (296)
T KOG4185|consen 207 EKLCEICERIYSENDEKLAPLVLSLSRLKEKIEGHT-LCKECIDTILLQAGIKCPFCTWS 265 (296)
T ss_pred HHHHHHHHHHhhccccccchhHHHHHHHHHHHHHHH-HHhcchHHHHHHhhhcCCcccce
Confidence 467999987544 234566 9999 9999999976554 579999864
No 148
>PLN02436 cellulose synthase A
Probab=27.33 E-value=42 Score=38.86 Aligned_cols=48 Identities=29% Similarity=0.684 Sum_probs=33.2
Q ss_pred CCCeeeecccCCCCe----EEeCCC---CcccCHHHHHHHhcc-CCCCccccccccc
Q 046132 302 PGKECVICLSEPRDT----TVLPCR---HMCMCSGCAKVLRFQ-TNRCPICRQPVER 350 (361)
Q Consensus 302 ~~~eCvICl~~~~d~----vlLPCg---H~cfC~~Ca~~l~~q-s~~CPICR~~I~~ 350 (361)
.+..|.||-++.-.+ .++-|. -- +|..|.+--+.. +..||.|++....
T Consensus 35 ~~~iCqICGD~Vg~t~dGe~FVACn~C~fp-vCr~Cyeyer~eg~~~Cpqckt~Y~r 90 (1094)
T PLN02436 35 SGQTCQICGDEIELTVDGEPFVACNECAFP-VCRPCYEYERREGNQACPQCKTRYKR 90 (1094)
T ss_pred CCccccccccccCcCCCCCEEEeeccCCCc-cccchhhhhhhcCCccCcccCCchhh
Confidence 446899999864322 455553 33 899999765443 4679999998874
No 149
>PF06906 DUF1272: Protein of unknown function (DUF1272); InterPro: IPR010696 This family consists of several hypothetical bacterial proteins of around 80 residues in length. This family contains a number of conserved cysteine residues and its function is unknown.
Probab=27.32 E-value=52 Score=24.96 Aligned_cols=22 Identities=27% Similarity=0.819 Sum_probs=18.0
Q ss_pred cCHHHHHHHhccCCCCcccccccc
Q 046132 326 MCSGCAKVLRFQTNRCPICRQPVE 349 (361)
Q Consensus 326 fC~~Ca~~l~~qs~~CPICR~~I~ 349 (361)
||..|++.+. ...||-|-..+.
T Consensus 31 FC~~C~e~~l--~~~CPNCgGelv 52 (57)
T PF06906_consen 31 FCADCAETML--NGVCPNCGGELV 52 (57)
T ss_pred ccHHHHHHHh--cCcCcCCCCccc
Confidence 8999999975 468999977654
No 150
>PF04423 Rad50_zn_hook: Rad50 zinc hook motif; InterPro: IPR007517 The Mre11 complex (Mre11 Rad50 Nbs1) is central to chromosomal maintenance and functions in homologous recombination, telomere maintenance and sister chromatid association. The Rad50 coiled-coil region contains a dimer interface at the apex of the coiled coils in which pairs of conserved Cys-X-X-Cys motifs form interlocking hooks that bind one Zn ion. This alignment includes the zinc hook motif and a short stretch of coiled-coil on either side.; GO: 0004518 nuclease activity, 0005524 ATP binding, 0008270 zinc ion binding, 0006281 DNA repair; PDB: 1L8D_B.
Probab=27.16 E-value=22 Score=25.90 Aligned_cols=12 Identities=33% Similarity=1.237 Sum_probs=6.2
Q ss_pred CCCccccccccc
Q 046132 339 NRCPICRQPVER 350 (361)
Q Consensus 339 ~~CPICR~~I~~ 350 (361)
..||+|..+++.
T Consensus 21 ~~CPlC~r~l~~ 32 (54)
T PF04423_consen 21 GCCPLCGRPLDE 32 (54)
T ss_dssp EE-TTT--EE-H
T ss_pred CcCCCCCCCCCH
Confidence 489999988753
No 151
>KOG0955 consensus PHD finger protein BR140/LIN-49 [General function prediction only]
Probab=26.35 E-value=29 Score=40.08 Aligned_cols=17 Identities=24% Similarity=0.485 Sum_probs=12.7
Q ss_pred CCCCCCeeeecccCCCC
Q 046132 299 ANDPGKECVICLSEPRD 315 (361)
Q Consensus 299 ~~~~~~eCvICl~~~~d 315 (361)
..+++..|+||++...+
T Consensus 215 ~~~~D~~C~iC~~~~~~ 231 (1051)
T KOG0955|consen 215 LLEEDAVCCICLDGECQ 231 (1051)
T ss_pred ccCCCccceeecccccC
Confidence 34566789999986665
No 152
>KOG0956 consensus PHD finger protein AF10 [General function prediction only]
Probab=26.19 E-value=56 Score=36.22 Aligned_cols=43 Identities=28% Similarity=0.613 Sum_probs=27.3
Q ss_pred eeeecccCCCC---eEEeCCCCcc-------------------cCHHHHHHHhccCCCCcccccc
Q 046132 305 ECVICLSEPRD---TTVLPCRHMC-------------------MCSGCAKVLRFQTNRCPICRQP 347 (361)
Q Consensus 305 eCvICl~~~~d---~vlLPCgH~c-------------------fC~~Ca~~l~~qs~~CPICR~~ 347 (361)
-|+||-|+.-+ .+++==||.| ||+.|-..-+...-+|-+|--.
T Consensus 7 GCCVCSDErGWaeNPLVYCDG~nCsVAVHQaCYGIvqVPtGpWfCrKCesqeraarvrCeLCP~k 71 (900)
T KOG0956|consen 7 GCCVCSDERGWAENPLVYCDGHNCSVAVHQACYGIVQVPTGPWFCRKCESQERAARVRCELCPHK 71 (900)
T ss_pred ceeeecCcCCCccCceeeecCCCceeeeehhcceeEecCCCchhhhhhhhhhhhccceeecccCc
Confidence 48888776544 3343334554 9999987755444678888543
No 153
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=25.24 E-value=35 Score=34.71 Aligned_cols=54 Identities=35% Similarity=0.548 Sum_probs=37.5
Q ss_pred CCCCeeeecccCCCCeEEeCCCCcc-----cCHHHHHHHhccCCCCccccccccceEEEEcCC
Q 046132 301 DPGKECVICLSEPRDTTVLPCRHMC-----MCSGCAKVLRFQTNRCPICRQPVERLLEIKVNG 358 (361)
Q Consensus 301 ~~~~eCvICl~~~~d~vlLPCgH~c-----fC~~Ca~~l~~qs~~CPICR~~I~~ll~I~v~~ 358 (361)
.-+.||.||-.-+.-..+-|=+++- .|..|++. ++.|-.|--.++--|.|.|.+
T Consensus 39 ~~gkECKICtrPfT~Frw~pgr~~r~kKTeICqtCakl----KNvCQ~CmLDle~glPiqvRD 97 (377)
T KOG0153|consen 39 PYGKECKICTRPFTIFRWCPGRGARFKKTEICQTCAKL----KNVCQTCMLDLEYGLPIQVRD 97 (377)
T ss_pred ccCCccceecCcceEEEeccccccccccchHHHHHHHH----HhHHHHhhhhhccCCcceehh
Confidence 4468999998766555555555443 59999874 357999987777666666654
No 154
>PLN02400 cellulose synthase
Probab=25.09 E-value=49 Score=38.34 Aligned_cols=49 Identities=29% Similarity=0.600 Sum_probs=32.4
Q ss_pred CCCeeeecccCCCCe----EEeCC---CCcccCHHHHHHHhc-cCCCCccccccccce
Q 046132 302 PGKECVICLSEPRDT----TVLPC---RHMCMCSGCAKVLRF-QTNRCPICRQPVERL 351 (361)
Q Consensus 302 ~~~eCvICl~~~~d~----vlLPC---gH~cfC~~Ca~~l~~-qs~~CPICR~~I~~l 351 (361)
.+..|.||-++.-.+ +++-| +-- .|..|.+-=+. -+..||.|++...+.
T Consensus 35 ~gqiCqICGD~VG~t~dGe~FVAC~eCaFP-VCRpCYEYERkeGnq~CPQCkTrYkR~ 91 (1085)
T PLN02400 35 NGQICQICGDDVGVTETGDVFVACNECAFP-VCRPCYEYERKDGTQCCPQCKTRYRRH 91 (1085)
T ss_pred CCceeeecccccCcCCCCCEEEEEccCCCc-cccchhheecccCCccCcccCCccccc
Confidence 456899999864332 34444 433 79999865333 346799999988743
No 155
>KOG0006 consensus E3 ubiquitin-protein ligase (Parkin protein) [Posttranslational modification, protein turnover, chaperones]
Probab=24.02 E-value=57 Score=33.03 Aligned_cols=31 Identities=23% Similarity=0.690 Sum_probs=27.0
Q ss_pred CCCeeeecccCCCCeEEeCCC--CcccCHHHHHH
Q 046132 302 PGKECVICLSEPRDTTVLPCR--HMCMCSGCAKV 333 (361)
Q Consensus 302 ~~~eCvICl~~~~d~vlLPCg--H~cfC~~Ca~~ 333 (361)
...+|..|-+....+.+++|. |+ .|..|...
T Consensus 220 ~ni~C~~Ctdv~~~vlvf~Cns~Hv-tC~dCFr~ 252 (446)
T KOG0006|consen 220 RNITCITCTDVRSPVLVFQCNSRHV-TCLDCFRL 252 (446)
T ss_pred ccceeEEecCCccceEEEecCCcee-ehHHhhhh
Confidence 346899999998888999999 99 99999874
No 156
>PF07191 zinc-ribbons_6: zinc-ribbons; InterPro: IPR010807 This family consists of several short, hypothetical bacterial proteins of around 70 residues in length. Members of this family 8 highly conserved cysteine residues. The function of the family is unknown.; PDB: 2JRP_A 2JNE_A.
Probab=23.98 E-value=4.5 Score=31.85 Aligned_cols=42 Identities=33% Similarity=0.638 Sum_probs=21.8
Q ss_pred CeeeecccCCCCeEEeCCCCcccCHHHHHHHhccCCCCccccccccce
Q 046132 304 KECVICLSEPRDTTVLPCRHMCMCSGCAKVLRFQTNRCPICRQPVERL 351 (361)
Q Consensus 304 ~eCvICl~~~~d~vlLPCgH~cfC~~Ca~~l~~qs~~CPICR~~I~~l 351 (361)
..|..|..+....- +|. .|..|...... ...||-|.++++.+
T Consensus 2 ~~CP~C~~~L~~~~----~~~-~C~~C~~~~~~-~a~CPdC~~~Le~L 43 (70)
T PF07191_consen 2 NTCPKCQQELEWQG----GHY-HCEACQKDYKK-EAFCPDCGQPLEVL 43 (70)
T ss_dssp -B-SSS-SBEEEET----TEE-EETTT--EEEE-EEE-TTT-SB-EEE
T ss_pred CcCCCCCCccEEeC----CEE-ECcccccccee-cccCCCcccHHHHH
Confidence 46888887633332 666 88888876432 25699998877654
No 157
>KOG3842 consensus Adaptor protein Pellino [Signal transduction mechanisms]
Probab=23.27 E-value=44 Score=33.75 Aligned_cols=41 Identities=22% Similarity=0.407 Sum_probs=22.9
Q ss_pred CeEEeCCCCcccC--HHHHHHHhccCCCCccccccccceEEEEc
Q 046132 315 DTTVLPCRHMCMC--SGCAKVLRFQTNRCPICRQPVERLLEIKV 356 (361)
Q Consensus 315 d~vlLPCgH~cfC--~~Ca~~l~~qs~~CPICR~~I~~ll~I~v 356 (361)
--+.|.|||+--- +.|-+.--.+...||+||. +...+.+++
T Consensus 316 P~vYl~CGHV~G~H~WG~~e~~g~~~r~CPmC~~-~gp~V~L~l 358 (429)
T KOG3842|consen 316 PWVYLNCGHVHGYHNWGVRENTGQRERECPMCRV-VGPYVPLWL 358 (429)
T ss_pred CeEEEeccccccccccccccccCcccCcCCeeee-ecceeeeec
Confidence 3578999998321 1111111112467999987 444666655
No 158
>cd05711 Ig_FcalphaRI Immunoglobulin (IG)-like domain of of FcalphaRI. IG_FcalphaRI : immunoglobulin (IG)-like domain of of FcalphaRI. FcalphaRI (CD89) is an IgA-specific receptor that is expressed on monocytes, eosinophils, neutrophils and macrophages. FcalphaRI mediates IgA-induced immune effector responses such as phagocytosis, antibody-dependent cell-mediated cytotoxicity and respiratory burst. Both monomeric and dimeric IgA can bind to FcalphaRI, and monomeric or dimeric IgA immune complexes can activate phagocytosis and other immune responses through the clustering of FcalphaRI. The Fc RI ectodomain is comprised of two Ig-like domains oriented at about 90 degree to each another.
Probab=21.70 E-value=2.9e+02 Score=21.83 Aligned_cols=53 Identities=15% Similarity=0.293 Sum_probs=33.7
Q ss_pred CCccccceeeeEeeceEecCcceEEEEcCCCC----------CeEEEEEEEeccCCeeeEEEe
Q 046132 121 PPYVEHQKAVTIRNDVNLKKESLKLEADEENP----------GKLLVSFTFDATVAGRRRRLQ 173 (361)
Q Consensus 121 ~p~ve~q~t~tIrn~VNlrK~SLRl~~~~~~~----------~~~~l~F~FDa~~~~~ItI~~ 173 (361)
.+-|.--.++||++...+..+++.|-+++... +++..+|.+.+.....-..|+
T Consensus 9 ~~vV~~G~~VTL~C~~~~~~~~f~l~k~g~~~~~~~~~~~~~~~~~a~f~I~~~~~~~~G~Y~ 71 (94)
T cd05711 9 SPVVPSGENVTLQCHSDIRFDRFILYKEGRSKPVLHLYEKHHGGFQASFPLGPVTPAHAGTYR 71 (94)
T ss_pred CCccCCCCeEEEEEecCCCCCEEEEEECCCCCCceecccccCCeEEEEEEecCCCcccCEEEE
Confidence 34455677899999888888888888765432 234555555555544444444
No 159
>PF06937 EURL: EURL protein; InterPro: IPR009704 This family consists of several animal EURL proteins. EURL is preferentially expressed in chick retinal precursor cells as well as in the anterior epithelial cells of the lens at early stages of development. EURL transcripts are found primarily in the peripheral dorsal retina, i.e., the most undifferentiated part of the dorsal retina. EURL transcripts are also detected in the lens at stage 18 and remain abundant in the proliferating epithelial cells of the lens until at least day 11. The distribution pattern of EURL in the developing retina and lens suggest a role before the events leading to cell determination and differentiation [].
Probab=20.76 E-value=58 Score=32.08 Aligned_cols=16 Identities=19% Similarity=0.584 Sum_probs=8.8
Q ss_pred CHHHHHHHhcc-CCCCc
Q 046132 327 CSGCAKVLRFQ-TNRCP 342 (361)
Q Consensus 327 C~~Ca~~l~~q-s~~CP 342 (361)
..+|.++|-.- ...||
T Consensus 58 HrdCFEK~HlIanQ~~p 74 (285)
T PF06937_consen 58 HRDCFEKYHLIANQDCP 74 (285)
T ss_pred hHHHHHHHHHHHcCCCC
Confidence 56777774322 24576
No 160
>PF07777 MFMR: G-box binding protein MFMR; InterPro: IPR012900 This region is found to the N terminus of IPR011616 from INTERPRO, which is a transcription factor domain. It is between 150 and 200 amino acids in length. The N-terminal half is rather rich in proline residues and has been termed the PRD (proline rich domain) [], whereas the C-terminal half is more polar and has been called the MFMR (multifunctional mosaic region). It has been suggested that this family is composed of three sub-families called A, B and C [], classified according to motif composition. It has been suggested that some of these motifs may be involved in mediating protein-protein interactions []. The MFMR region contains a nuclear localisation signal in bZIP opaque and GBF-2 []. The MFMR also contains a transregulatory activity in TAF-1. The MFMR in CPRF-2 contains cytoplasmic retention signals []. ; GO: 0003677 DNA binding, 0006351 transcription, DNA-dependent, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=20.57 E-value=2.7e+02 Score=26.06 Aligned_cols=6 Identities=17% Similarity=0.528 Sum_probs=3.4
Q ss_pred CCCCCC
Q 046132 78 YYPPPP 83 (361)
Q Consensus 78 ~~ppp~ 83 (361)
-|-+++
T Consensus 62 MWG~~q 67 (189)
T PF07777_consen 62 MWGPQQ 67 (189)
T ss_pred ccCCCc
Confidence 575554
No 161
>PLN02915 cellulose synthase A [UDP-forming], catalytic subunit
Probab=20.19 E-value=1.1e+02 Score=35.55 Aligned_cols=48 Identities=25% Similarity=0.573 Sum_probs=32.4
Q ss_pred CCCeeeecccCCCCe----EEeCC---CCcccCHHHHHHHhc-cCCCCccccccccc
Q 046132 302 PGKECVICLSEPRDT----TVLPC---RHMCMCSGCAKVLRF-QTNRCPICRQPVER 350 (361)
Q Consensus 302 ~~~eCvICl~~~~d~----vlLPC---gH~cfC~~Ca~~l~~-qs~~CPICR~~I~~ 350 (361)
....|.||-++.-.+ .++-| +-- +|..|.+-=+. -+..||.|.+....
T Consensus 14 ~~~~c~iCGd~vg~~~~Ge~FVAC~eC~fp-vCr~cyeye~~~g~~~cp~c~t~y~~ 69 (1044)
T PLN02915 14 DAKTCRVCGDEVGVKEDGQPFVACHVCGFP-VCKPCYEYERSEGNQCCPQCNTRYKR 69 (1044)
T ss_pred CcchhhccccccCcCCCCCEEEEeccCCCc-cccchhhhhhhcCCccCCccCCchhh
Confidence 456899998863322 34444 443 89999976433 35679999998874
Done!