Query 046132
Match_columns 361
No_of_seqs 305 out of 1516
Neff 5.6
Searched_HMMs 29240
Date Mon Mar 25 15:42:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046132.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/046132hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2vje_B MDM4 protein; proto-onc 99.5 8.3E-15 2.8E-19 110.1 3.7 55 302-356 6-62 (63)
2 2ea5_A Cell growth regulator w 99.5 1.4E-14 4.8E-19 110.7 4.3 57 299-359 11-67 (68)
3 2vje_A E3 ubiquitin-protein li 99.5 1.5E-14 5.1E-19 109.1 4.2 56 302-357 7-64 (64)
4 4ic3_A E3 ubiquitin-protein li 99.2 2.1E-12 7.1E-17 99.6 2.8 51 302-356 23-73 (74)
5 2yho_A E3 ubiquitin-protein li 99.2 3E-12 1E-16 100.4 3.2 54 302-359 17-70 (79)
6 2d8t_A Dactylidin, ring finger 99.2 1.1E-11 3.6E-16 94.2 4.8 50 300-350 12-61 (71)
7 2csy_A Zinc finger protein 183 99.2 1.5E-11 5.2E-16 95.6 5.4 54 298-352 10-63 (81)
8 2ecn_A Ring finger protein 141 99.2 9.1E-12 3.1E-16 94.0 3.6 57 298-356 10-66 (70)
9 2ecg_A Baculoviral IAP repeat- 99.1 6.3E-12 2.1E-16 97.0 1.3 50 303-356 25-74 (75)
10 2ea6_A Ring finger protein 4; 99.1 2.1E-11 7E-16 91.0 3.3 51 299-350 11-68 (69)
11 2kiz_A E3 ubiquitin-protein li 99.1 3.7E-11 1.3E-15 90.3 4.7 53 299-352 10-65 (69)
12 2djb_A Polycomb group ring fin 99.1 4E-11 1.4E-15 91.3 4.8 55 296-351 8-63 (72)
13 1chc_A Equine herpes virus-1 r 99.1 2.2E-11 7.6E-16 91.2 3.2 54 302-356 4-58 (68)
14 2ep4_A Ring finger protein 24; 99.1 3.6E-11 1.2E-15 91.6 2.9 58 298-356 10-70 (74)
15 2ysl_A Tripartite motif-contai 99.1 1.2E-10 4.2E-15 88.1 5.8 51 299-350 16-69 (73)
16 2ect_A Ring finger protein 126 99.1 5.5E-11 1.9E-15 91.5 3.3 53 298-351 10-65 (78)
17 2xeu_A Ring finger protein 4; 99.1 4.5E-11 1.5E-15 87.9 2.2 52 303-355 3-63 (64)
18 2l0b_A E3 ubiquitin-protein li 99.1 1E-10 3.5E-15 93.3 4.5 49 301-350 38-89 (91)
19 3ng2_A RNF4, snurf, ring finge 99.0 2.8E-11 9.4E-16 91.1 1.0 49 301-350 8-63 (71)
20 2ecw_A Tripartite motif-contai 99.0 1.7E-10 5.8E-15 89.1 5.5 52 298-350 14-71 (85)
21 2yur_A Retinoblastoma-binding 99.0 4.1E-11 1.4E-15 91.9 2.0 53 297-350 9-64 (74)
22 2ecm_A Ring finger and CHY zin 99.0 8.1E-11 2.8E-15 84.4 3.0 48 302-350 4-55 (55)
23 2ecy_A TNF receptor-associated 99.0 1.5E-10 5.1E-15 86.5 4.4 51 299-350 11-62 (66)
24 2ct2_A Tripartite motif protei 99.0 1.9E-10 6.4E-15 89.9 4.9 51 298-349 10-67 (88)
25 1iym_A EL5; ring-H2 finger, ub 99.0 1.3E-10 4.4E-15 83.5 3.3 48 301-349 3-54 (55)
26 2ecv_A Tripartite motif-contai 99.0 1.6E-10 5.5E-15 89.2 3.9 52 298-350 14-71 (85)
27 1x4j_A Ring finger protein 38; 99.0 1.2E-10 3.9E-15 89.2 2.8 49 301-350 21-72 (75)
28 4ayc_A E3 ubiquitin-protein li 99.0 2E-10 6.9E-15 98.2 4.6 48 303-351 53-100 (138)
29 3ztg_A E3 ubiquitin-protein li 99.0 2.5E-10 8.6E-15 90.4 4.2 51 298-349 8-61 (92)
30 2egp_A Tripartite motif-contai 99.0 1.3E-10 4.6E-15 89.1 2.5 51 299-350 8-65 (79)
31 2ysj_A Tripartite motif-contai 98.9 1.3E-09 4.4E-14 80.5 5.7 46 298-344 15-63 (63)
32 1t1h_A Gspef-atpub14, armadill 98.9 7E-10 2.4E-14 85.2 4.4 50 300-350 5-55 (78)
33 2ecj_A Tripartite motif-contai 98.9 1E-09 3.5E-14 79.3 4.6 46 298-344 10-58 (58)
34 3t6p_A Baculoviral IAP repeat- 98.9 2E-10 6.9E-15 113.0 1.1 52 301-356 293-344 (345)
35 2kre_A Ubiquitin conjugation f 98.9 1.9E-09 6.5E-14 88.1 5.3 54 296-350 22-75 (100)
36 1v87_A Deltex protein 2; ring- 98.9 1.2E-09 4.3E-14 89.7 3.9 48 303-351 25-95 (114)
37 2y1n_A E3 ubiquitin-protein li 98.8 1.2E-09 4.1E-14 108.9 4.4 54 303-357 332-386 (389)
38 2ckl_A Polycomb group ring fin 98.8 1.5E-09 5.2E-14 88.7 3.6 48 302-350 14-62 (108)
39 3lrq_A E3 ubiquitin-protein li 98.8 1.3E-09 4.5E-14 88.3 2.9 48 302-350 21-70 (100)
40 3fl2_A E3 ubiquitin-protein li 98.8 1.3E-09 4.4E-14 91.2 2.7 48 302-350 51-99 (124)
41 2ckl_B Ubiquitin ligase protei 98.8 7.9E-10 2.7E-14 96.9 1.3 49 301-350 52-102 (165)
42 4ap4_A E3 ubiquitin ligase RNF 98.8 1.8E-09 6E-14 89.8 3.4 56 302-358 6-70 (133)
43 2ecl_A Ring-box protein 2; RNF 98.8 2.7E-09 9.3E-14 83.4 4.0 48 302-350 14-76 (81)
44 2y43_A E3 ubiquitin-protein li 98.8 2.5E-09 8.4E-14 86.0 3.7 48 302-350 21-69 (99)
45 1e4u_A Transcriptional repress 98.8 2.1E-09 7.3E-14 84.1 3.0 51 300-351 8-63 (78)
46 1g25_A CDK-activating kinase a 98.8 2.2E-09 7.4E-14 79.9 2.7 47 303-350 3-55 (65)
47 2kr4_A Ubiquitin conjugation f 98.8 5.4E-09 1.8E-13 82.7 4.8 52 298-350 9-60 (85)
48 1bor_A Transcription factor PM 98.8 7.7E-10 2.6E-14 80.7 -0.2 45 301-349 4-48 (56)
49 3l11_A E3 ubiquitin-protein li 98.8 9.8E-10 3.4E-14 90.7 0.4 49 301-350 13-62 (115)
50 1jm7_A BRCA1, breast cancer ty 98.7 2.6E-09 8.9E-14 87.1 2.5 47 303-350 21-70 (112)
51 3hct_A TNF receptor-associated 98.7 3.2E-09 1.1E-13 88.3 2.9 50 300-350 15-65 (118)
52 1z6u_A NP95-like ring finger p 98.7 5E-09 1.7E-13 91.3 3.6 49 302-351 77-126 (150)
53 1wgm_A Ubiquitin conjugation f 98.7 1.5E-08 5.1E-13 82.4 5.5 50 300-350 19-69 (98)
54 4ap4_A E3 ubiquitin ligase RNF 98.7 6.7E-09 2.3E-13 86.2 2.5 54 302-356 71-133 (133)
55 3dpl_R Ring-box protein 1; ubi 98.6 2.3E-08 8E-13 82.6 4.4 45 304-349 38-100 (106)
56 1rmd_A RAG1; V(D)J recombinati 98.6 1.6E-08 5.3E-13 83.5 3.2 48 302-350 22-70 (116)
57 3knv_A TNF receptor-associated 98.6 1.3E-08 4.3E-13 87.9 1.6 48 300-348 28-76 (141)
58 1jm7_B BARD1, BRCA1-associated 98.4 2.3E-08 8E-13 82.9 0.2 45 302-349 21-66 (117)
59 2c2l_A CHIP, carboxy terminus 98.4 8.3E-08 2.9E-12 89.1 3.6 50 300-350 205-255 (281)
60 3hcs_A TNF receptor-associated 98.4 7.3E-08 2.5E-12 84.6 2.9 50 300-350 15-65 (170)
61 2d8s_A Cellular modulator of i 98.4 7.8E-08 2.7E-12 75.6 2.7 52 301-353 13-73 (80)
62 4a0k_B E3 ubiquitin-protein li 98.3 8.7E-08 3E-12 80.7 0.6 45 304-349 49-111 (117)
63 2yu4_A E3 SUMO-protein ligase 98.3 4.7E-07 1.6E-11 72.6 3.7 46 301-347 5-59 (94)
64 2f42_A STIP1 homology and U-bo 98.2 8.7E-07 3E-11 79.7 3.7 50 300-350 103-153 (179)
65 3vk6_A E3 ubiquitin-protein li 97.9 8.4E-06 2.9E-10 66.7 4.0 50 306-356 4-55 (101)
66 3htk_C E3 SUMO-protein ligase 97.9 8.5E-06 2.9E-10 77.4 4.1 48 301-349 179-231 (267)
67 1vyx_A ORF K3, K3RING; zinc-bi 97.8 8.2E-06 2.8E-10 60.6 3.0 48 301-349 4-58 (60)
68 2bay_A PRE-mRNA splicing facto 97.8 9.3E-06 3.2E-10 60.4 2.4 52 303-355 3-57 (61)
69 1wim_A KIAA0161 protein; ring 97.8 7.8E-06 2.7E-10 65.0 1.8 45 302-347 4-61 (94)
70 2ct0_A Non-SMC element 1 homol 97.6 0.0001 3.5E-09 57.1 5.7 48 302-350 14-64 (74)
71 3k1l_B Fancl; UBC, ring, RWD, 97.3 3.6E-05 1.2E-09 75.8 -0.1 50 300-350 305-373 (381)
72 2ko5_A Ring finger protein Z; 95.4 0.0046 1.6E-07 50.0 1.3 50 304-356 29-79 (99)
73 3nw0_A Non-structural maintena 91.9 0.13 4.3E-06 47.8 4.2 47 303-350 180-229 (238)
74 2jun_A Midline-1; B-BOX, TRIM, 90.7 0.087 3E-06 41.6 1.6 30 303-333 3-35 (101)
75 2cs3_A Protein C14ORF4, MY039 80.4 0.91 3.1E-05 35.7 2.5 33 301-334 13-49 (93)
76 2d8v_A Zinc finger FYVE domain 61.9 3.2 0.00011 31.3 1.6 34 300-335 5-39 (67)
77 2a20_A Regulating synaptic mem 58.4 0.55 1.9E-05 34.7 -3.0 32 300-335 6-44 (62)
78 3i2d_A E3 SUMO-protein ligase 54.5 5.2 0.00018 39.5 2.1 45 303-348 249-298 (371)
79 1z60_A TFIIH basal transcripti 52.3 11 0.00037 27.6 3.0 40 304-344 16-58 (59)
80 3m62_A Ubiquitin conjugation f 50.2 11 0.00037 41.6 4.0 52 299-350 887-938 (968)
81 4fo9_A E3 SUMO-protein ligase 47.9 8.2 0.00028 37.9 2.3 46 303-349 215-265 (360)
82 2fiy_A Protein FDHE homolog; F 45.9 3.6 0.00012 39.5 -0.6 46 301-347 180-231 (309)
83 1weo_A Cellulose synthase, cat 36.4 55 0.0019 26.0 5.0 49 302-350 15-70 (93)
84 3ql9_A Transcriptional regulat 33.2 29 0.001 29.1 3.2 47 300-347 54-111 (129)
85 2lri_C Autoimmune regulator; Z 32.0 37 0.0013 25.0 3.2 46 301-347 10-59 (66)
86 2pv0_B DNA (cytosine-5)-methyl 23.0 58 0.002 32.2 3.7 54 299-353 89-155 (386)
87 1wem_A Death associated transc 22.5 36 0.0012 25.3 1.6 45 301-347 14-70 (76)
88 2lbm_A Transcriptional regulat 22.3 67 0.0023 27.3 3.5 47 300-347 60-117 (142)
89 2csz_A Synaptotagmin-like prot 21.6 8.8 0.0003 29.6 -2.0 46 300-346 22-72 (76)
90 1wil_A KIAA1045 protein; ring 21.1 88 0.003 24.6 3.6 34 300-334 12-47 (89)
No 1
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=99.50 E-value=8.3e-15 Score=110.12 Aligned_cols=55 Identities=27% Similarity=0.725 Sum_probs=51.0
Q ss_pred CCCeeeecccCCCCeEEe--CCCCcccCHHHHHHHhccCCCCccccccccceEEEEc
Q 046132 302 PGKECVICLSEPRDTTVL--PCRHMCMCSGCAKVLRFQTNRCPICRQPVERLLEIKV 356 (361)
Q Consensus 302 ~~~eCvICl~~~~d~vlL--PCgH~cfC~~Ca~~l~~qs~~CPICR~~I~~ll~I~v 356 (361)
...+|.||++..++++++ ||||++||.+|+..|+.+..+||+||++|..+++|++
T Consensus 6 ~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~~~i~i~~ 62 (63)
T 2vje_B 6 LLKPCSLCEKRPRDGNIIHGRTGHLVTCFHCARRLKKAGASCPICKKEIQLVIKVFI 62 (63)
T ss_dssp GGSBCTTTSSSBSCEEEEETTEEEEEECHHHHHHHHHTTCBCTTTCCBCCEEEEEEE
T ss_pred cCCCCcccCCcCCCeEEEecCCCCHhHHHHHHHHHHHhCCcCCCcCchhhceEEEec
Confidence 456899999999999888 9999999999999998877899999999999999986
No 2
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.49 E-value=1.4e-14 Score=110.70 Aligned_cols=57 Identities=35% Similarity=0.948 Sum_probs=50.8
Q ss_pred CCCCCCeeeecccCCCCeEEeCCCCcccCHHHHHHHhccCCCCccccccccceEEEEcCCC
Q 046132 299 ANDPGKECVICLSEPRDTTVLPCRHMCMCSGCAKVLRFQTNRCPICRQPVERLLEIKVNGP 359 (361)
Q Consensus 299 ~~~~~~eCvICl~~~~d~vlLPCgH~cfC~~Ca~~l~~qs~~CPICR~~I~~ll~I~v~~~ 359 (361)
..++..+|.||++..++++++||||++||..|+..+ ..||+||+.|...++|+.+++
T Consensus 11 ~~~~~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~~----~~CP~CR~~i~~~~~i~~~~s 67 (68)
T 2ea5_A 11 SEENSKDCVVCQNGTVNWVLLPCRHTCLCDGCVKYF----QQCPMCRQFVQESFALSGPSS 67 (68)
T ss_dssp SCCCSSCCSSSSSSCCCCEETTTTBCCSCTTHHHHC----SSCTTTCCCCCCEECCCSSCC
T ss_pred cCCCCCCCCCcCcCCCCEEEECCCChhhhHHHHhcC----CCCCCCCcchhceEEeecCCC
Confidence 344568899999999999999999999999999965 589999999999999988764
No 3
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=99.48 E-value=1.5e-14 Score=109.05 Aligned_cols=56 Identities=30% Similarity=0.746 Sum_probs=51.6
Q ss_pred CCCeeeecccCCCCeEEe--CCCCcccCHHHHHHHhccCCCCccccccccceEEEEcC
Q 046132 302 PGKECVICLSEPRDTTVL--PCRHMCMCSGCAKVLRFQTNRCPICRQPVERLLEIKVN 357 (361)
Q Consensus 302 ~~~eCvICl~~~~d~vlL--PCgH~cfC~~Ca~~l~~qs~~CPICR~~I~~ll~I~v~ 357 (361)
++.+|+||+++.++++++ ||||+++|.+|+..|+.+...||+||+.|..+++|++.
T Consensus 7 ~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~~~i~i~~~ 64 (64)
T 2vje_A 7 AIEPCVICQGRPKNGCIVHGKTGHLMACFTCAKKLKKRNKPCPVCRQPIQMIVLTYFP 64 (64)
T ss_dssp GGSCCTTTSSSCSCEEEEETTEEEEEECHHHHHHHHHTTCCCTTTCCCCCEEEEEECC
T ss_pred CcCCCCcCCCCCCCEEEECCCCCChhhHHHHHHHHHHcCCcCCCcCcchhceEeeecC
Confidence 356899999999999988 99999999999999998888999999999999999873
No 4
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=99.24 E-value=2.1e-12 Score=99.62 Aligned_cols=51 Identities=27% Similarity=0.751 Sum_probs=47.3
Q ss_pred CCCeeeecccCCCCeEEeCCCCcccCHHHHHHHhccCCCCccccccccceEEEEc
Q 046132 302 PGKECVICLSEPRDTTVLPCRHMCMCSGCAKVLRFQTNRCPICRQPVERLLEIKV 356 (361)
Q Consensus 302 ~~~eCvICl~~~~d~vlLPCgH~cfC~~Ca~~l~~qs~~CPICR~~I~~ll~I~v 356 (361)
+..+|.||++..++++++||||.+||..|+..| ..||+||+.|...++|++
T Consensus 23 ~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~----~~CP~Cr~~i~~~~~i~~ 73 (74)
T 4ic3_A 23 EEKLCKICMDRNIAIVFVPCGHLVTCKQCAEAV----DKCPMCYTVITFKQKILM 73 (74)
T ss_dssp HHTBCTTTSSSBCCEEEETTCCBCCCHHHHTTC----SBCTTTCCBCSEEEECBC
T ss_pred cCCCCCCCCCCCCCEEEcCCCChhHHHHhhhcC----ccCCCcCcCccCcEEEee
Confidence 346899999999999999999999999999988 589999999999999886
No 5
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=99.23 E-value=3e-12 Score=100.41 Aligned_cols=54 Identities=31% Similarity=0.773 Sum_probs=48.9
Q ss_pred CCCeeeecccCCCCeEEeCCCCcccCHHHHHHHhccCCCCccccccccceEEEEcCCC
Q 046132 302 PGKECVICLSEPRDTTVLPCRHMCMCSGCAKVLRFQTNRCPICRQPVERLLEIKVNGP 359 (361)
Q Consensus 302 ~~~eCvICl~~~~d~vlLPCgH~cfC~~Ca~~l~~qs~~CPICR~~I~~ll~I~v~~~ 359 (361)
++.+|.||++..++++++||||++||..|+..|+ .||+||+.|...++|++..+
T Consensus 17 ~~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~~~----~CP~Cr~~i~~~~~i~~p~~ 70 (79)
T 2yho_A 17 EAMLCMVCCEEEINSTFCPCGHTVCCESCAAQLQ----SCPVCRSRVEHVQHVYLPTH 70 (79)
T ss_dssp HHTBCTTTSSSBCCEEEETTCBCCBCHHHHTTCS----BCTTTCCBCCEEEECBCTTC
T ss_pred CCCEeEEeCcccCcEEEECCCCHHHHHHHHHhcC----cCCCCCchhhCeEEEEeCcc
Confidence 3468999999999999999999999999999874 89999999999999987653
No 6
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.20 E-value=1.1e-11 Score=94.25 Aligned_cols=50 Identities=34% Similarity=0.766 Sum_probs=45.2
Q ss_pred CCCCCeeeecccCCCCeEEeCCCCcccCHHHHHHHhccCCCCccccccccc
Q 046132 300 NDPGKECVICLSEPRDTTVLPCRHMCMCSGCAKVLRFQTNRCPICRQPVER 350 (361)
Q Consensus 300 ~~~~~eCvICl~~~~d~vlLPCgH~cfC~~Ca~~l~~qs~~CPICR~~I~~ 350 (361)
..+..+|.||++..++.++++|||. ||..|+..|......||+||..|..
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~CgH~-fC~~Ci~~~~~~~~~CP~Cr~~~~~ 61 (71)
T 2d8t_A 12 SLTVPECAICLQTCVHPVSLPCKHV-FCYLCVKGASWLGKRCALCRQEIPE 61 (71)
T ss_dssp SSSCCBCSSSSSBCSSEEEETTTEE-EEHHHHHHCTTCSSBCSSSCCBCCH
T ss_pred CCCCCCCccCCcccCCCEEccCCCH-HHHHHHHHHHHCCCcCcCcCchhCH
Confidence 4456789999999999999999999 9999999998888899999999864
No 7
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.19 E-value=1.5e-11 Score=95.56 Aligned_cols=54 Identities=31% Similarity=0.655 Sum_probs=47.3
Q ss_pred CCCCCCCeeeecccCCCCeEEeCCCCcccCHHHHHHHhccCCCCccccccccceE
Q 046132 298 DANDPGKECVICLSEPRDTTVLPCRHMCMCSGCAKVLRFQTNRCPICRQPVERLL 352 (361)
Q Consensus 298 ~~~~~~~eCvICl~~~~d~vlLPCgH~cfC~~Ca~~l~~qs~~CPICR~~I~~ll 352 (361)
++.+...+|.||++...+.++++|||. ||..|+..|......||+||..+...+
T Consensus 10 ~~~~~~~~C~IC~~~~~~p~~~~CgH~-fC~~Ci~~~~~~~~~CP~Cr~~~~~~~ 63 (81)
T 2csy_A 10 EEEEIPFRCFICRQAFQNPVVTKCRHY-FCESCALEHFRATPRCYICDQPTGGIF 63 (81)
T ss_dssp SCCCCCSBCSSSCSBCCSEEECTTSCE-EEHHHHHHHHHHCSBCSSSCCBCCSCC
T ss_pred ccCCCCCCCcCCCchhcCeeEccCCCH-hHHHHHHHHHHCCCcCCCcCccccccC
Confidence 344556799999999999999999999 999999999887889999999987543
No 8
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.18 E-value=9.1e-12 Score=93.97 Aligned_cols=57 Identities=30% Similarity=0.659 Sum_probs=48.9
Q ss_pred CCCCCCCeeeecccCCCCeEEeCCCCcccCHHHHHHHhccCCCCccccccccceEEEEc
Q 046132 298 DANDPGKECVICLSEPRDTTVLPCRHMCMCSGCAKVLRFQTNRCPICRQPVERLLEIKV 356 (361)
Q Consensus 298 ~~~~~~~eCvICl~~~~d~vlLPCgH~cfC~~Ca~~l~~qs~~CPICR~~I~~ll~I~v 356 (361)
+...+..+|.||++...+ ++++|+|. ||..|+..|......||+||..+.....+++
T Consensus 10 ~~~~~~~~C~IC~~~~~~-~~~~CgH~-fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~ 66 (70)
T 2ecn_A 10 KQLTDEEECCICMDGRAD-LILPCAHS-FCQKCIDKWSDRHRNCPICRLQMTGANESSG 66 (70)
T ss_dssp CCCCCCCCCSSSCCSCCS-EEETTTEE-ECHHHHHHSSCCCSSCHHHHHCTTCCCCCCC
T ss_pred hcCCCCCCCeeCCcCccC-cccCCCCc-ccHHHHHHHHHCcCcCCCcCCcccCCCcccc
Confidence 344556789999999999 89999999 9999999998888899999999987655544
No 9
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.15 E-value=6.3e-12 Score=96.96 Aligned_cols=50 Identities=28% Similarity=0.761 Sum_probs=45.7
Q ss_pred CCeeeecccCCCCeEEeCCCCcccCHHHHHHHhccCCCCccccccccceEEEEc
Q 046132 303 GKECVICLSEPRDTTVLPCRHMCMCSGCAKVLRFQTNRCPICRQPVERLLEIKV 356 (361)
Q Consensus 303 ~~eCvICl~~~~d~vlLPCgH~cfC~~Ca~~l~~qs~~CPICR~~I~~ll~I~v 356 (361)
..+|.||++..++++++||||.+||..|+..+ ..||+||..|...++|++
T Consensus 25 ~~~C~IC~~~~~~~~~~pCgH~~~C~~C~~~~----~~CP~Cr~~i~~~~~i~~ 74 (75)
T 2ecg_A 25 EKLCKICMDRNIAIVFVPCGHLVTCKQCAEAV----DKCPMCYTVITFKQKIFM 74 (75)
T ss_dssp HHSCSSSCSSCCCBCCSSSCCCCBCHHHHHHC----SBCTTTCCBCCCCCBCCC
T ss_pred CCCCCcCCCCCCCEEEecCCCHHHHHHHhhCC----CCCccCCceecCcEEEec
Confidence 46799999999999999999999999999765 589999999999988876
No 10
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.13 E-value=2.1e-11 Score=91.03 Aligned_cols=51 Identities=25% Similarity=0.644 Sum_probs=44.2
Q ss_pred CCCCCCeeeecccCCCCe-------EEeCCCCcccCHHHHHHHhccCCCCccccccccc
Q 046132 299 ANDPGKECVICLSEPRDT-------TVLPCRHMCMCSGCAKVLRFQTNRCPICRQPVER 350 (361)
Q Consensus 299 ~~~~~~eCvICl~~~~d~-------vlLPCgH~cfC~~Ca~~l~~qs~~CPICR~~I~~ 350 (361)
...+..+|.||++...+. ++++|||. ||..|+..|......||+||..|..
T Consensus 11 ~~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~-fc~~Ci~~~~~~~~~CP~Cr~~~~~ 68 (69)
T 2ea6_A 11 RPSGTVSCPICMDGYSEIVQNGRLIVSTECGHV-FCSQCLRDSLKNANTCPTCRKKINH 68 (69)
T ss_dssp CTTCCCCCTTTCCCHHHHTTTTCCEEECSSSCE-EEHHHHHHHHHHCSSCTTTCCCCCC
T ss_pred CCCCCCCCcccCccccccccccCCeEeCCCCCh-hcHHHHHHHHHcCCCCCCCCCccCc
Confidence 345567899999987775 89999999 9999999998888899999998864
No 11
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=99.13 E-value=3.7e-11 Score=90.30 Aligned_cols=53 Identities=36% Similarity=0.780 Sum_probs=44.4
Q ss_pred CCCCCCeeeecccCC---CCeEEeCCCCcccCHHHHHHHhccCCCCccccccccceE
Q 046132 299 ANDPGKECVICLSEP---RDTTVLPCRHMCMCSGCAKVLRFQTNRCPICRQPVERLL 352 (361)
Q Consensus 299 ~~~~~~eCvICl~~~---~d~vlLPCgH~cfC~~Ca~~l~~qs~~CPICR~~I~~ll 352 (361)
+.+...+|.||++.. ...++++|+|. ||..|+..|.....+||+||..|...+
T Consensus 10 ~~~~~~~C~IC~~~~~~~~~~~~~~C~H~-fc~~Ci~~~~~~~~~CP~Cr~~~~~~~ 65 (69)
T 2kiz_A 10 EEDTEEKCTICLSILEEGEDVRRLPCMHL-FHQVCVDQWLITNKKCPICRVDIEAQL 65 (69)
T ss_dssp STTCCCSBTTTTBCCCSSSCEEECTTSCE-EEHHHHHHHHHHCSBCTTTCSBSCSCC
T ss_pred cCCCCCCCeeCCccccCCCcEEEeCCCCH-HHHHHHHHHHHcCCCCcCcCccccCcC
Confidence 345567899998765 45688999999 999999999988889999999987643
No 12
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.12 E-value=4e-11 Score=91.28 Aligned_cols=55 Identities=29% Similarity=0.606 Sum_probs=47.5
Q ss_pred CCCCCCCCCeeeecccCCCCeEEe-CCCCcccCHHHHHHHhccCCCCccccccccce
Q 046132 296 DVDANDPGKECVICLSEPRDTTVL-PCRHMCMCSGCAKVLRFQTNRCPICRQPVERL 351 (361)
Q Consensus 296 ~~~~~~~~~eCvICl~~~~d~vlL-PCgH~cfC~~Ca~~l~~qs~~CPICR~~I~~l 351 (361)
+.++.++..+|.||++...+.+.+ +|||. ||..|+..|......||+||..+...
T Consensus 8 ~~~~~~~~~~C~IC~~~~~~p~~~~~CgH~-fC~~Ci~~~~~~~~~CP~Cr~~~~~~ 63 (72)
T 2djb_A 8 NLSELTPYILCSICKGYLIDATTITECLHT-FCKSCIVRHFYYSNRCPKCNIVVHQT 63 (72)
T ss_dssp CCCCCCGGGSCTTTSSCCSSCEECSSSCCE-ECHHHHHHHHHHCSSCTTTCCCCCSS
T ss_pred hHhhcCCCCCCCCCChHHHCcCEECCCCCH-HHHHHHHHHHHcCCcCCCcCcccCcc
Confidence 344456678999999999999887 99999 99999999988788999999998653
No 13
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=99.12 E-value=2.2e-11 Score=91.16 Aligned_cols=54 Identities=33% Similarity=0.803 Sum_probs=47.3
Q ss_pred CCCeeeecccCCCC-eEEeCCCCcccCHHHHHHHhccCCCCccccccccceEEEEc
Q 046132 302 PGKECVICLSEPRD-TTVLPCRHMCMCSGCAKVLRFQTNRCPICRQPVERLLEIKV 356 (361)
Q Consensus 302 ~~~eCvICl~~~~d-~vlLPCgH~cfC~~Ca~~l~~qs~~CPICR~~I~~ll~I~v 356 (361)
.+.+|.||++...+ .++++|||. ||..|+..|.....+||+||+.+..+++...
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~C~H~-fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~ 58 (68)
T 1chc_A 4 VAERCPICLEDPSNYSMALPCLHA-FCYVCITRWIRQNPTCPLCKVPVESVVHTIE 58 (68)
T ss_dssp CCCCCSSCCSCCCSCEEETTTTEE-ESTTHHHHHHHHSCSTTTTCCCCCCEECCCC
T ss_pred CCCCCeeCCccccCCcEecCCCCe-eHHHHHHHHHhCcCcCcCCChhhHhhhhccc
Confidence 45689999999998 488999999 9999999998888999999999998766543
No 14
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.08 E-value=3.6e-11 Score=91.61 Aligned_cols=58 Identities=22% Similarity=0.543 Sum_probs=47.7
Q ss_pred CCCCCCCeeeecccCCCC---eEEeCCCCcccCHHHHHHHhccCCCCccccccccceEEEEc
Q 046132 298 DANDPGKECVICLSEPRD---TTVLPCRHMCMCSGCAKVLRFQTNRCPICRQPVERLLEIKV 356 (361)
Q Consensus 298 ~~~~~~~eCvICl~~~~d---~vlLPCgH~cfC~~Ca~~l~~qs~~CPICR~~I~~ll~I~v 356 (361)
.+.+.+.+|.||++...+ .++++|+|. ||..|+..|......||+||..|..+..+..
T Consensus 10 ~~~~~~~~C~IC~~~~~~~~~~~~~~C~H~-f~~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~ 70 (74)
T 2ep4_A 10 KELNLHELCAVCLEDFKPRDELGICPCKHA-FHRKCLIKWLEVRKVCPLCNMPVLQLAQLSG 70 (74)
T ss_dssp CCCCCSCBCSSSCCBCCSSSCEEEETTTEE-EEHHHHHHHHHHCSBCTTTCCBCSSCCSCCC
T ss_pred ccCCCCCCCcCCCcccCCCCcEEEcCCCCE-ecHHHHHHHHHcCCcCCCcCcccccccccCC
Confidence 344556789999997653 556799999 9999999999888899999999988766544
No 15
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.08 E-value=1.2e-10 Score=88.10 Aligned_cols=51 Identities=24% Similarity=0.599 Sum_probs=44.2
Q ss_pred CCCCCCeeeecccCCCCeEEeCCCCcccCHHHHHHHhc---cCCCCccccccccc
Q 046132 299 ANDPGKECVICLSEPRDTTVLPCRHMCMCSGCAKVLRF---QTNRCPICRQPVER 350 (361)
Q Consensus 299 ~~~~~~eCvICl~~~~d~vlLPCgH~cfC~~Ca~~l~~---qs~~CPICR~~I~~ 350 (361)
..++..+|.||++...+.++++|||. ||..|+..|.. ....||+||+.+..
T Consensus 16 ~~~~~~~C~IC~~~~~~~~~~~CgH~-fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 69 (73)
T 2ysl_A 16 KLQEEVICPICLDILQKPVTIDCGHN-FCLKCITQIGETSCGFFKCPLCKTSVRK 69 (73)
T ss_dssp CCCCCCBCTTTCSBCSSEEECTTCCE-EEHHHHHHHCSSSCSCCCCSSSCCCCCC
T ss_pred hCccCCEeccCCcccCCeEEcCCCCh-hhHHHHHHHHHcCCCCCCCCCCCCcCCc
Confidence 34566899999999999999999999 99999999985 34589999998854
No 16
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.07 E-value=5.5e-11 Score=91.47 Aligned_cols=53 Identities=26% Similarity=0.668 Sum_probs=43.9
Q ss_pred CCCCCCCeeeecccCCC---CeEEeCCCCcccCHHHHHHHhccCCCCccccccccce
Q 046132 298 DANDPGKECVICLSEPR---DTTVLPCRHMCMCSGCAKVLRFQTNRCPICRQPVERL 351 (361)
Q Consensus 298 ~~~~~~~eCvICl~~~~---d~vlLPCgH~cfC~~Ca~~l~~qs~~CPICR~~I~~l 351 (361)
+..+...+|.||++... ..++++|+|. ||..|+..|.....+||+||..+...
T Consensus 10 ~~~~~~~~C~IC~~~~~~~~~~~~~~C~H~-fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 65 (78)
T 2ect_A 10 EHVGSGLECPVCKEDYALGESVRQLPCNHL-FHDSCIVPWLEQHDSCPVCRKSLTGQ 65 (78)
T ss_dssp TTSSSSCCCTTTTSCCCTTSCEEECTTSCE-EETTTTHHHHTTTCSCTTTCCCCCCS
T ss_pred ccCCCCCCCeeCCccccCCCCEEEeCCCCe-ecHHHHHHHHHcCCcCcCcCCccCCc
Confidence 34455679999988765 3467899999 99999999998888999999998753
No 17
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=99.05 E-value=4.5e-11 Score=87.89 Aligned_cols=52 Identities=27% Similarity=0.630 Sum_probs=44.5
Q ss_pred CCeeeecccCCCCe-------EEeCCCCcccCHHHHHHHhccCCCCccccccccc--eEEEE
Q 046132 303 GKECVICLSEPRDT-------TVLPCRHMCMCSGCAKVLRFQTNRCPICRQPVER--LLEIK 355 (361)
Q Consensus 303 ~~eCvICl~~~~d~-------vlLPCgH~cfC~~Ca~~l~~qs~~CPICR~~I~~--ll~I~ 355 (361)
+.+|.||++...+. ++++|||. ||..|+..|.....+||+||+.+.. +.+|+
T Consensus 3 ~~~C~IC~~~~~~~~~~~~~~~~~~CgH~-fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~~ 63 (64)
T 2xeu_A 3 MVSCPICMDGYSEIVQNGRLIVSTECGHV-FCSQCLRDSLKNANTCPTCRKKINHKRYHPIY 63 (64)
T ss_dssp CCBCTTTCCBHHHHHHTTCCEEEETTSCE-EEHHHHHHHHHHCSBCTTTCCBCTTTCEEECC
T ss_pred CCCCCccChhhhCccccCCCEEeCCCCCc-hhHHHHHHHHHcCCCCCCCCccCCccceeeee
Confidence 46899999987765 88999999 9999999998888899999999874 45544
No 18
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=99.05 E-value=1e-10 Score=93.33 Aligned_cols=49 Identities=31% Similarity=0.639 Sum_probs=43.2
Q ss_pred CCCCeeeecccCCCC---eEEeCCCCcccCHHHHHHHhccCCCCccccccccc
Q 046132 301 DPGKECVICLSEPRD---TTVLPCRHMCMCSGCAKVLRFQTNRCPICRQPVER 350 (361)
Q Consensus 301 ~~~~eCvICl~~~~d---~vlLPCgH~cfC~~Ca~~l~~qs~~CPICR~~I~~ 350 (361)
+++..|.||++...+ .+.++|+|. ||..|+..|......||+||..+..
T Consensus 38 ~~~~~C~IC~~~~~~~~~~~~l~C~H~-Fh~~Ci~~wl~~~~~CP~Cr~~~~~ 89 (91)
T 2l0b_A 38 GQEMCCPICCSEYVKGDVATELPCHHY-FHKPCVSIWLQKSGTCPVCRCMFPP 89 (91)
T ss_dssp SSCSEETTTTEECCTTCEEEEETTTEE-EEHHHHHHHHTTTCBCTTTCCBSSC
T ss_pred CCCCCCcccChhhcCCCcEEecCCCCh-HHHHHHHHHHHcCCcCcCcCccCCC
Confidence 345789999988776 788999999 9999999999888899999998864
No 19
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=99.05 E-value=2.8e-11 Score=91.12 Aligned_cols=49 Identities=27% Similarity=0.680 Sum_probs=43.3
Q ss_pred CCCCeeeecccCCCCe-------EEeCCCCcccCHHHHHHHhccCCCCccccccccc
Q 046132 301 DPGKECVICLSEPRDT-------TVLPCRHMCMCSGCAKVLRFQTNRCPICRQPVER 350 (361)
Q Consensus 301 ~~~~eCvICl~~~~d~-------vlLPCgH~cfC~~Ca~~l~~qs~~CPICR~~I~~ 350 (361)
+++.+|.||++...+. ++++|||. ||..|+..|.....+||+||..+..
T Consensus 8 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~-fc~~Ci~~~~~~~~~CP~Cr~~~~~ 63 (71)
T 3ng2_A 8 SGTVSCPICMDGYSEIVQNGRLIVSTECGHV-FCSQCLRDSLKNANTCPTCRKKINH 63 (71)
T ss_dssp TTCCBCTTTCCBHHHHHTTTCCEEECTTSCE-EEHHHHHHHHHHCSBCTTTCCBCCC
T ss_pred CCCCCCcccChhhhccccccCCeEeCCCCCh-HhHHHHHHHHHcCCCCCCCCCccCh
Confidence 3457899999987776 89999999 9999999999888999999999864
No 20
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.05 E-value=1.7e-10 Score=89.11 Aligned_cols=52 Identities=25% Similarity=0.628 Sum_probs=45.2
Q ss_pred CCCCCCCeeeecccCCCCeEEeCCCCcccCHHHHHHHhcc------CCCCccccccccc
Q 046132 298 DANDPGKECVICLSEPRDTTVLPCRHMCMCSGCAKVLRFQ------TNRCPICRQPVER 350 (361)
Q Consensus 298 ~~~~~~~eCvICl~~~~d~vlLPCgH~cfC~~Ca~~l~~q------s~~CPICR~~I~~ 350 (361)
+..++..+|.||++...+.++++|||. ||..|+..|... ...||+||..+..
T Consensus 14 ~~~~~~~~C~IC~~~~~~p~~~~CgH~-fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~ 71 (85)
T 2ecw_A 14 EMIKEEVTCPICLELLKEPVSADCNHS-FCRACITLNYESNRNTDGKGNCPVCRVPYPF 71 (85)
T ss_dssp CCCCTTTSCTTTCSCCSSCEECTTSCC-BCHHHHHHHHHHSBCTTSCBCCTTTCCCCCT
T ss_pred HhCccCCCCcCCChhhCcceeCCCCCH-HHHHHHHHHHHhccCCCCCCCCCCCCCcCCH
Confidence 334556789999999999999999999 999999998776 5789999999864
No 21
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=99.05 E-value=4.1e-11 Score=91.90 Aligned_cols=53 Identities=26% Similarity=0.617 Sum_probs=45.2
Q ss_pred CCCCCCCCeeeecccCCCCeEEeC-CCCcccCHHHHHHHhccC--CCCccccccccc
Q 046132 297 VDANDPGKECVICLSEPRDTTVLP-CRHMCMCSGCAKVLRFQT--NRCPICRQPVER 350 (361)
Q Consensus 297 ~~~~~~~~eCvICl~~~~d~vlLP-CgH~cfC~~Ca~~l~~qs--~~CPICR~~I~~ 350 (361)
.+...+...|.||++...+.++++ |||. ||..|+..|.... ..||+||+.+..
T Consensus 9 ~~~~~~~~~C~IC~~~~~~p~~~~~CgH~-fC~~Ci~~~~~~~~~~~CP~Cr~~~~~ 64 (74)
T 2yur_A 9 DDPIPDELLCLICKDIMTDAVVIPCCGNS-YCDECIRTALLESDEHTCPTCHQNDVS 64 (74)
T ss_dssp CCCSCGGGSCSSSCCCCTTCEECSSSCCE-ECTTHHHHHHHHSSSSCCSSSCCSSCC
T ss_pred cccCCCCCCCcCCChHHhCCeEcCCCCCH-HHHHHHHHHHHhcCCCcCCCCCCcCCC
Confidence 344556789999999999999999 9999 9999999998754 689999997543
No 22
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=99.04 E-value=8.1e-11 Score=84.37 Aligned_cols=48 Identities=31% Similarity=0.769 Sum_probs=42.1
Q ss_pred CCCeeeecccCCCC----eEEeCCCCcccCHHHHHHHhccCCCCccccccccc
Q 046132 302 PGKECVICLSEPRD----TTVLPCRHMCMCSGCAKVLRFQTNRCPICRQPVER 350 (361)
Q Consensus 302 ~~~eCvICl~~~~d----~vlLPCgH~cfC~~Ca~~l~~qs~~CPICR~~I~~ 350 (361)
++.+|.||++...+ .++++|+|. ||..|+..|.....+||+||+.+.+
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~CgH~-fc~~Ci~~~~~~~~~CP~Cr~~~~g 55 (55)
T 2ecm_A 4 GSSGCPICLEDIHTSRVVAHVLPCGHL-LHRTCYEEMLKEGYRCPLCSGPSSG 55 (55)
T ss_dssp CCCSCTTTCCCCCTTTSCEEECTTSCE-EETTHHHHHHHHTCCCTTSCCSSCC
T ss_pred CCCcCcccChhhcCCCcCeEecCCCCc-ccHHHHHHHHHcCCcCCCCCCcCCC
Confidence 35689999998765 789999999 9999999998888999999998753
No 23
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.03 E-value=1.5e-10 Score=86.51 Aligned_cols=51 Identities=18% Similarity=0.496 Sum_probs=44.2
Q ss_pred CCCCCCeeeecccCCCCeEEeCCCCcccCHHHHHHHhc-cCCCCccccccccc
Q 046132 299 ANDPGKECVICLSEPRDTTVLPCRHMCMCSGCAKVLRF-QTNRCPICRQPVER 350 (361)
Q Consensus 299 ~~~~~~eCvICl~~~~d~vlLPCgH~cfC~~Ca~~l~~-qs~~CPICR~~I~~ 350 (361)
..++..+|.||++..++.++++|||. ||..|+..|.. ....||+||+.+..
T Consensus 11 ~~~~~~~C~IC~~~~~~p~~~~CgH~-fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 62 (66)
T 2ecy_A 11 TVEDKYKCEKCHLVLCSPKQTECGHR-FCESCMAALLSSSSPKCTACQESIVK 62 (66)
T ss_dssp SCCCCEECTTTCCEESSCCCCSSSCC-CCHHHHHHHHTTSSCCCTTTCCCCCT
T ss_pred cCCcCCCCCCCChHhcCeeECCCCCH-HHHHHHHHHHHhCcCCCCCCCcCCCh
Confidence 34556899999999999999999999 99999999984 45789999998864
No 24
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.02 E-value=1.9e-10 Score=89.86 Aligned_cols=51 Identities=31% Similarity=0.696 Sum_probs=44.1
Q ss_pred CCCCCCCeeeecccCCCC----eEEeCCCCcccCHHHHHHHhccC---CCCcccccccc
Q 046132 298 DANDPGKECVICLSEPRD----TTVLPCRHMCMCSGCAKVLRFQT---NRCPICRQPVE 349 (361)
Q Consensus 298 ~~~~~~~eCvICl~~~~d----~vlLPCgH~cfC~~Ca~~l~~qs---~~CPICR~~I~ 349 (361)
+..++..+|.||++...+ .++++|||. ||..|+..|.... ..||+||..+.
T Consensus 10 ~~~~~~~~C~IC~~~~~~~~~~~~~~~CgH~-fC~~Ci~~~~~~~~~~~~CP~Cr~~~~ 67 (88)
T 2ct2_A 10 DALREVLECPICMESFTEEQLRPKLLHCGHT-ICRQCLEKLLASSINGVRCPFCSKITR 67 (88)
T ss_dssp CCCCSCCBCTTTCCBCCTTSSCEEECSSSCE-EEHHHHHHHHHHCSSCBCCTTTCCCBC
T ss_pred hhccCCCCCccCCccccccCCCeEECCCCCh-hhHHHHHHHHHcCCCCcCCCCCCCccc
Confidence 344566889999999998 999999999 9999999998765 78999999874
No 25
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=99.02 E-value=1.3e-10 Score=83.46 Aligned_cols=48 Identities=38% Similarity=0.834 Sum_probs=41.9
Q ss_pred CCCCeeeecccCCCC---eEEeC-CCCcccCHHHHHHHhccCCCCcccccccc
Q 046132 301 DPGKECVICLSEPRD---TTVLP-CRHMCMCSGCAKVLRFQTNRCPICRQPVE 349 (361)
Q Consensus 301 ~~~~eCvICl~~~~d---~vlLP-CgH~cfC~~Ca~~l~~qs~~CPICR~~I~ 349 (361)
+++.+|.||++...+ .+.++ |+|. ||..|+..|.....+||+||+.+.
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~-f~~~Ci~~w~~~~~~CP~Cr~~~~ 54 (55)
T 1iym_A 3 DDGVECAVCLAELEDGEEARFLPRCGHG-FHAECVDMWLGSHSTCPLCRLTVV 54 (55)
T ss_dssp CCSCCCTTTCCCCCTTSCCEECSSSCCE-ECTTHHHHTTTTCCSCSSSCCCSC
T ss_pred CCCCcCccCCccccCCCceEECCCCCCc-ccHHHHHHHHHcCCcCcCCCCEeE
Confidence 345789999998877 77887 9999 999999999988899999999763
No 26
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.01 E-value=1.6e-10 Score=89.22 Aligned_cols=52 Identities=25% Similarity=0.581 Sum_probs=45.2
Q ss_pred CCCCCCCeeeecccCCCCeEEeCCCCcccCHHHHHHHhcc------CCCCccccccccc
Q 046132 298 DANDPGKECVICLSEPRDTTVLPCRHMCMCSGCAKVLRFQ------TNRCPICRQPVER 350 (361)
Q Consensus 298 ~~~~~~~eCvICl~~~~d~vlLPCgH~cfC~~Ca~~l~~q------s~~CPICR~~I~~ 350 (361)
+..++..+|.||++...+.++++|||. ||..|+..|... ...||+||..+..
T Consensus 14 ~~~~~~~~C~IC~~~~~~p~~~~CgH~-fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~ 71 (85)
T 2ecv_A 14 VNVKEEVTCPICLELLTQPLSLDCGHS-FCQACLTANHKKSMLDKGESSCPVCRISYQP 71 (85)
T ss_dssp CCCCCCCCCTTTCSCCSSCBCCSSSCC-BCTTHHHHHHHHHHHTTSCCCCTTTCCSSCS
T ss_pred HHccCCCCCCCCCcccCCceeCCCCCH-HHHHHHHHHHHHhhcCCCCCcCCCCCCccCH
Confidence 344566899999999999999999999 999999998766 6789999998864
No 27
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.00 E-value=1.2e-10 Score=89.24 Aligned_cols=49 Identities=29% Similarity=0.677 Sum_probs=42.2
Q ss_pred CCCCeeeecccCCCCe---EEeCCCCcccCHHHHHHHhccCCCCccccccccc
Q 046132 301 DPGKECVICLSEPRDT---TVLPCRHMCMCSGCAKVLRFQTNRCPICRQPVER 350 (361)
Q Consensus 301 ~~~~eCvICl~~~~d~---vlLPCgH~cfC~~Ca~~l~~qs~~CPICR~~I~~ 350 (361)
+++.+|.||++...+. ++++|+|. ||..|+..|......||+||+.+..
T Consensus 21 ~~~~~C~IC~~~~~~~~~~~~l~C~H~-fh~~Ci~~w~~~~~~CP~Cr~~~~~ 72 (75)
T 1x4j_A 21 SEQTLCVVCMCDFESRQLLRVLPCNHE-FHAKCVDKWLKANRTCPICRADSGP 72 (75)
T ss_dssp SSCCEETTTTEECCBTCEEEEETTTEE-EETTHHHHHHHHCSSCTTTCCCCCC
T ss_pred CCCCCCeECCcccCCCCeEEEECCCCH-hHHHHHHHHHHcCCcCcCcCCcCCC
Confidence 3457899999876654 78999999 9999999999888899999998864
No 28
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=99.00 E-value=2e-10 Score=98.22 Aligned_cols=48 Identities=29% Similarity=0.670 Sum_probs=44.2
Q ss_pred CCeeeecccCCCCeEEeCCCCcccCHHHHHHHhccCCCCccccccccce
Q 046132 303 GKECVICLSEPRDTTVLPCRHMCMCSGCAKVLRFQTNRCPICRQPVERL 351 (361)
Q Consensus 303 ~~eCvICl~~~~d~vlLPCgH~cfC~~Ca~~l~~qs~~CPICR~~I~~l 351 (361)
+..|.||++...++++++|||. ||..|+..|......||+||..|...
T Consensus 53 ~~~C~iC~~~~~~~~~~~CgH~-fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 100 (138)
T 4ayc_A 53 ELQCIICSEYFIEAVTLNCAHS-FCSYCINEWMKRKIECPICRKDIKSK 100 (138)
T ss_dssp HSBCTTTCSBCSSEEEETTSCE-EEHHHHHHHTTTCSBCTTTCCBCCCE
T ss_pred cCCCcccCcccCCceECCCCCC-ccHHHHHHHHHcCCcCCCCCCcCCCC
Confidence 3579999999999999999998 99999999998889999999999764
No 29
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=98.98 E-value=2.5e-10 Score=90.40 Aligned_cols=51 Identities=27% Similarity=0.662 Sum_probs=43.9
Q ss_pred CCCCCCCeeeecccCCCCeEEeC-CCCcccCHHHHHHHhccC--CCCcccccccc
Q 046132 298 DANDPGKECVICLSEPRDTTVLP-CRHMCMCSGCAKVLRFQT--NRCPICRQPVE 349 (361)
Q Consensus 298 ~~~~~~~eCvICl~~~~d~vlLP-CgH~cfC~~Ca~~l~~qs--~~CPICR~~I~ 349 (361)
+...+...|.||++...++++++ |||. ||..|+..|+... ..||+||..+.
T Consensus 8 ~~~~~~~~C~IC~~~~~~p~~~~~CgH~-fC~~Ci~~~~~~~~~~~CP~Cr~~~~ 61 (92)
T 3ztg_A 8 DPIPDELLCLICKDIMTDAVVIPCCGNS-YCDECIRTALLESDEHTCPTCHQNDV 61 (92)
T ss_dssp CCCCTTTEETTTTEECSSCEECTTTCCE-ECHHHHHHHHHHCTTCCCTTTCCSSC
T ss_pred ccCCcCCCCCCCChhhcCceECCCCCCH-HHHHHHHHHHHhcCCCcCcCCCCcCC
Confidence 34456789999999999999999 9999 9999999987543 58999999873
No 30
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=98.98 E-value=1.3e-10 Score=89.08 Aligned_cols=51 Identities=25% Similarity=0.599 Sum_probs=44.2
Q ss_pred CCCCCCeeeecccCCCCeEEeCCCCcccCHHHHHHHhcc-------CCCCccccccccc
Q 046132 299 ANDPGKECVICLSEPRDTTVLPCRHMCMCSGCAKVLRFQ-------TNRCPICRQPVER 350 (361)
Q Consensus 299 ~~~~~~eCvICl~~~~d~vlLPCgH~cfC~~Ca~~l~~q-------s~~CPICR~~I~~ 350 (361)
..++..+|.||++...+.++++|||. ||..|+..|... ...||+||..+..
T Consensus 8 ~~~~~~~C~IC~~~~~~p~~l~CgH~-fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~ 65 (79)
T 2egp_A 8 NVQEEVTCPICLELLTEPLSLDCGHS-LCRACITVSNKEAVTSMGGKSSCPVCGISYSF 65 (79)
T ss_dssp CCCCCCEETTTTEECSSCCCCSSSCC-CCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCS
T ss_pred hcccCCCCcCCCcccCCeeECCCCCH-HHHHHHHHHHHhcccCCCCCCcCCCCCCcCCH
Confidence 34556899999999999999999999 999999998765 5689999998853
No 31
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.92 E-value=1.3e-09 Score=80.48 Aligned_cols=46 Identities=24% Similarity=0.610 Sum_probs=40.0
Q ss_pred CCCCCCCeeeecccCCCCeEEeCCCCcccCHHHHHHHhc---cCCCCccc
Q 046132 298 DANDPGKECVICLSEPRDTTVLPCRHMCMCSGCAKVLRF---QTNRCPIC 344 (361)
Q Consensus 298 ~~~~~~~eCvICl~~~~d~vlLPCgH~cfC~~Ca~~l~~---qs~~CPIC 344 (361)
+..++..+|.||++...+.++++|||. ||..|+..|.. ...+||+|
T Consensus 15 ~~~~~~~~C~IC~~~~~~p~~~~CgH~-fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 15 NKLQEEVICPICLDILQKPVTIDCGHN-FCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCCCCCCBCTTTCSBCSSCEECTTSSE-ECHHHHHHHHHHCSSCCCCSCC
T ss_pred HhCccCCCCCcCCchhCCeEEeCCCCc-chHHHHHHHHHcCCCCCcCcCC
Confidence 344567899999999999999999999 99999999986 34689998
No 32
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=98.92 E-value=7e-10 Score=85.19 Aligned_cols=50 Identities=12% Similarity=0.151 Sum_probs=44.6
Q ss_pred CCCCCeeeecccCCCCeEEeCCCCcccCHHHHHHHhcc-CCCCccccccccc
Q 046132 300 NDPGKECVICLSEPRDTTVLPCRHMCMCSGCAKVLRFQ-TNRCPICRQPVER 350 (361)
Q Consensus 300 ~~~~~eCvICl~~~~d~vlLPCgH~cfC~~Ca~~l~~q-s~~CPICR~~I~~ 350 (361)
..+...|.||++...+.++++|||. ||..|+..|... ..+||+||..+..
T Consensus 5 ~~~~~~C~IC~~~~~~Pv~~~CgH~-fc~~Ci~~~~~~~~~~CP~C~~~~~~ 55 (78)
T 1t1h_A 5 FPEYFRCPISLELMKDPVIVSTGQT-YERSSIQKWLDAGHKTCPKSQETLLH 55 (78)
T ss_dssp CSSSSSCTTTSCCCSSEEEETTTEE-EEHHHHHHHHTTTCCBCTTTCCBCSS
T ss_pred CcccCCCCCccccccCCEEcCCCCe-ecHHHHHHHHHHCcCCCCCCcCCCCh
Confidence 3456789999999999999999999 999999999876 6789999999864
No 33
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.91 E-value=1e-09 Score=79.26 Aligned_cols=46 Identities=22% Similarity=0.685 Sum_probs=39.4
Q ss_pred CCCCCCCeeeecccCCCCeEEeCCCCcccCHHHHHHHhc---cCCCCccc
Q 046132 298 DANDPGKECVICLSEPRDTTVLPCRHMCMCSGCAKVLRF---QTNRCPIC 344 (361)
Q Consensus 298 ~~~~~~~eCvICl~~~~d~vlLPCgH~cfC~~Ca~~l~~---qs~~CPIC 344 (361)
+..++...|.||++..++.++++|||. ||..|+..|.. ....||+|
T Consensus 10 ~~~~~~~~C~IC~~~~~~p~~~~CgH~-fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 10 ENLQVEASCSVCLEYLKEPVIIECGHN-FCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp SCSCCCCBCSSSCCBCSSCCCCSSCCC-CCHHHHHHHTTSSCCSCCCSCC
T ss_pred hccccCCCCccCCcccCccEeCCCCCc-cCHHHHHHHHHhcCCCCCCCCC
Confidence 344566789999999999999999999 99999999943 45789998
No 34
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=98.90 E-value=2e-10 Score=113.02 Aligned_cols=52 Identities=27% Similarity=0.823 Sum_probs=47.1
Q ss_pred CCCCeeeecccCCCCeEEeCCCCcccCHHHHHHHhccCCCCccccccccceEEEEc
Q 046132 301 DPGKECVICLSEPRDTTVLPCRHMCMCSGCAKVLRFQTNRCPICRQPVERLLEIKV 356 (361)
Q Consensus 301 ~~~~eCvICl~~~~d~vlLPCgH~cfC~~Ca~~l~~qs~~CPICR~~I~~ll~I~v 356 (361)
++...|.||++...+++++||||.|||..|+..| ..||+||..|...++|++
T Consensus 293 ~~~~~C~IC~~~~~~~v~lpCgH~~fC~~C~~~~----~~CP~CR~~i~~~~~i~~ 344 (345)
T 3t6p_A 293 QEERTCKVCMDKEVSVVFIPCGHLVVCQECAPSL----RKCPICRGIIKGTVRTFL 344 (345)
T ss_dssp HTTCBCTTTSSSBCCEEEETTCCEEECTTTGGGC----SBCTTTCCBCCEEEECC-
T ss_pred cCCCCCCccCCcCCceEEcCCCChhHhHHHHhcC----CcCCCCCCCccCeEEeec
Confidence 3457899999999999999999999999999987 589999999999999876
No 35
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=98.86 E-value=1.9e-09 Score=88.08 Aligned_cols=54 Identities=15% Similarity=0.068 Sum_probs=47.3
Q ss_pred CCCCCCCCCeeeecccCCCCeEEeCCCCcccCHHHHHHHhccCCCCccccccccc
Q 046132 296 DVDANDPGKECVICLSEPRDTTVLPCRHMCMCSGCAKVLRFQTNRCPICRQPVER 350 (361)
Q Consensus 296 ~~~~~~~~~eCvICl~~~~d~vlLPCgH~cfC~~Ca~~l~~qs~~CPICR~~I~~ 350 (361)
+..+..+...|.||++-.+|+|+++|||. ||..|+..|+....+||+||.++..
T Consensus 22 ~~~~~p~~~~CpI~~~~m~dPV~~~cGht-f~r~~I~~~l~~~~~cP~~~~~l~~ 75 (100)
T 2kre_A 22 DYSDAPDEFRDPLMDTLMTDPVRLPSGTI-MDRSIILRHLLNSPTDPFNRQTLTE 75 (100)
T ss_dssp SCSSCSTTTBCTTTCSBCSSEEEETTTEE-EEHHHHHHHTTSCSBCSSSCCBCCT
T ss_pred hhccCcHhhCCcCccCcccCCeECCCCCE-EchHHHHHHHHcCCCCCCCCCCCCh
Confidence 33445567899999999999999999999 9999999998877899999998864
No 36
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=98.85 E-value=1.2e-09 Score=89.66 Aligned_cols=48 Identities=19% Similarity=0.497 Sum_probs=39.2
Q ss_pred CCeeeecccCCCCe------------------EEeCCCCcccCHHHHHHHh-----ccCCCCccccccccce
Q 046132 303 GKECVICLSEPRDT------------------TVLPCRHMCMCSGCAKVLR-----FQTNRCPICRQPVERL 351 (361)
Q Consensus 303 ~~eCvICl~~~~d~------------------vlLPCgH~cfC~~Ca~~l~-----~qs~~CPICR~~I~~l 351 (361)
+.+|.||++...+. .+++|+|. ||..|+..|. .....||+||+.+...
T Consensus 25 ~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~-Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~~ 95 (114)
T 1v87_A 25 EEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHA-FHLLCLLAMYCNGNKDGSLQCPSCKTIYGEK 95 (114)
T ss_dssp SCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCE-ECHHHHHHHHHHTCCSSCCBCTTTCCBSSSC
T ss_pred CCcCccCChhhcCcccccccccccccCcccceecCCCCCc-ccHHHHHHHHHcccCCCCCcCCCCCCccCCC
Confidence 35899999987543 38899999 9999999998 3457899999988643
No 37
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=98.85 E-value=1.2e-09 Score=108.93 Aligned_cols=54 Identities=30% Similarity=0.722 Sum_probs=48.7
Q ss_pred CCeeeecccCCCCeEEeCCCCcccCHHHHHHHhc-cCCCCccccccccceEEEEcC
Q 046132 303 GKECVICLSEPRDTTVLPCRHMCMCSGCAKVLRF-QTNRCPICRQPVERLLEIKVN 357 (361)
Q Consensus 303 ~~eCvICl~~~~d~vlLPCgH~cfC~~Ca~~l~~-qs~~CPICR~~I~~ll~I~v~ 357 (361)
..+|.||++...++++++|||. ||..|+..|.. ....||+||+.+.....|.++
T Consensus 332 ~~~C~ICle~~~~pv~lpCGH~-FC~~Ci~~wl~~~~~~CP~CR~~i~~~~~i~v~ 386 (389)
T 2y1n_A 332 FQLCKICAENDKDVKIEPCGHL-MCTSCLTSWQESEGQGCPFCRCEIKGTEPIVVD 386 (389)
T ss_dssp SSBCTTTSSSBCCEEEETTCCE-ECHHHHHHHHHHTCSBCTTTCCBCCEEEECSCC
T ss_pred CCCCCccCcCCCCeEEeCCCCh-hhHHHHHHHHhcCCCCCCCCCCccCCceeEecC
Confidence 4689999999999999999999 89999999987 568899999999988777664
No 38
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=98.83 E-value=1.5e-09 Score=88.67 Aligned_cols=48 Identities=31% Similarity=0.660 Sum_probs=44.0
Q ss_pred CCCeeeecccCCCCeEEe-CCCCcccCHHHHHHHhccCCCCccccccccc
Q 046132 302 PGKECVICLSEPRDTTVL-PCRHMCMCSGCAKVLRFQTNRCPICRQPVER 350 (361)
Q Consensus 302 ~~~eCvICl~~~~d~vlL-PCgH~cfC~~Ca~~l~~qs~~CPICR~~I~~ 350 (361)
+...|.||++...+.+.+ +|||. ||..|+..|......||+||..+..
T Consensus 14 ~~~~C~IC~~~~~~p~~~~~CgH~-fC~~Ci~~~~~~~~~CP~Cr~~~~~ 62 (108)
T 2ckl_A 14 PHLMCVLCGGYFIDATTIIECLHS-FCKTCIVRYLETSKYCPICDVQVHK 62 (108)
T ss_dssp GGTBCTTTSSBCSSEEEETTTCCE-EEHHHHHHHHTSCSBCTTTCCBSCS
T ss_pred CcCCCccCChHHhCcCEeCCCCCh-hhHHHHHHHHHhCCcCcCCCccccc
Confidence 457899999999999998 99999 9999999999888899999999874
No 39
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=98.82 E-value=1.3e-09 Score=88.31 Aligned_cols=48 Identities=27% Similarity=0.725 Sum_probs=43.1
Q ss_pred CCCeeeecccCCCCeEE-eCCCCcccCHHHHHHHhccC-CCCccccccccc
Q 046132 302 PGKECVICLSEPRDTTV-LPCRHMCMCSGCAKVLRFQT-NRCPICRQPVER 350 (361)
Q Consensus 302 ~~~eCvICl~~~~d~vl-LPCgH~cfC~~Ca~~l~~qs-~~CPICR~~I~~ 350 (361)
+...|.||++...+.++ ++|||. ||..|+..|+... ..||+||..+..
T Consensus 21 ~~~~C~IC~~~~~~p~~~~~CgH~-FC~~Ci~~~~~~~~~~CP~Cr~~~~~ 70 (100)
T 3lrq_A 21 EVFRCFICMEKLRDARLCPHCSKL-CCFSCIRRWLTEQRAQCPHCRAPLQL 70 (100)
T ss_dssp HHTBCTTTCSBCSSEEECTTTCCE-EEHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred CCCCCccCCccccCccccCCCCCh-hhHHHHHHHHHHCcCCCCCCCCcCCH
Confidence 45789999999999999 999999 9999999998877 689999999853
No 40
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=98.81 E-value=1.3e-09 Score=91.24 Aligned_cols=48 Identities=23% Similarity=0.510 Sum_probs=42.5
Q ss_pred CCCeeeecccCCCCeEEeCCCCcccCHHHHHHHhccC-CCCccccccccc
Q 046132 302 PGKECVICLSEPRDTTVLPCRHMCMCSGCAKVLRFQT-NRCPICRQPVER 350 (361)
Q Consensus 302 ~~~eCvICl~~~~d~vlLPCgH~cfC~~Ca~~l~~qs-~~CPICR~~I~~ 350 (361)
+...|.||++...++++++|||. ||..|+..|+... ..||+||..+..
T Consensus 51 ~~~~C~IC~~~~~~p~~~~CgH~-fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 99 (124)
T 3fl2_A 51 ETFQCICCQELVFRPITTVCQHN-VCKDCLDRSFRAQVFSCPACRYDLGR 99 (124)
T ss_dssp HHTBCTTTSSBCSSEEECTTSCE-EEHHHHHHHHHTTCCBCTTTCCBCCT
T ss_pred cCCCCCcCChHHcCcEEeeCCCc-ccHHHHHHHHhHCcCCCCCCCccCCC
Confidence 34689999999999999999999 9999999987644 489999999965
No 41
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=98.81 E-value=7.9e-10 Score=96.90 Aligned_cols=49 Identities=27% Similarity=0.636 Sum_probs=42.9
Q ss_pred CCCCeeeecccCCCCeEEe-CCCCcccCHHHHHHHhcc-CCCCccccccccc
Q 046132 301 DPGKECVICLSEPRDTTVL-PCRHMCMCSGCAKVLRFQ-TNRCPICRQPVER 350 (361)
Q Consensus 301 ~~~~eCvICl~~~~d~vlL-PCgH~cfC~~Ca~~l~~q-s~~CPICR~~I~~ 350 (361)
.+...|.||++...+.+.+ +|||. ||..|+..|... ...||+||..+..
T Consensus 52 ~~~~~C~IC~~~~~~p~~~~~CgH~-fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 102 (165)
T 2ckl_B 52 HSELMCPICLDMLKNTMTTKECLHR-FCADCIITALRSGNKECPTCRKKLVS 102 (165)
T ss_dssp HHHHBCTTTSSBCSSEEEETTTCCE-EEHHHHHHHHHTTCCBCTTTCCBCCS
T ss_pred CCCCCCcccChHhhCcCEeCCCCCh-hHHHHHHHHHHhCcCCCCCCCCcCCC
Confidence 3456899999999999887 99999 999999999876 6789999999853
No 42
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.80 E-value=1.8e-09 Score=89.79 Aligned_cols=56 Identities=25% Similarity=0.613 Sum_probs=47.6
Q ss_pred CCCeeeecccCCCCe-------EEeCCCCcccCHHHHHHHhccCCCCccccccccc--eEEEEcCC
Q 046132 302 PGKECVICLSEPRDT-------TVLPCRHMCMCSGCAKVLRFQTNRCPICRQPVER--LLEIKVNG 358 (361)
Q Consensus 302 ~~~eCvICl~~~~d~-------vlLPCgH~cfC~~Ca~~l~~qs~~CPICR~~I~~--ll~I~v~~ 358 (361)
+..+|.||++...+. ++++|||. ||..|+..|.....+||+||+.+.. +..++++.
T Consensus 6 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~-fc~~Ci~~~~~~~~~CP~Cr~~~~~~~l~~l~i~~ 70 (133)
T 4ap4_A 6 GTVSCPICMDGYSEIVQNGRLIVSTECGHV-FCSQCLRDSLKNANTCPTCRKKINHKRYHPIYIGS 70 (133)
T ss_dssp CSCBCTTTCCBHHHHHHTTCCEEEETTCCE-EEHHHHHHHHTTCSBCTTTCCBCTTTCEEECBCSS
T ss_pred CCCCCcccChhhhCccccccCeEecCCCCh-hhHHHHHHHHHhCCCCCCCCCcCccccccccccCC
Confidence 457899999988776 99999999 9999999999888899999999974 45565554
No 43
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.80 E-value=2.7e-09 Score=83.41 Aligned_cols=48 Identities=31% Similarity=0.634 Sum_probs=39.0
Q ss_pred CCCeeeecccCCCC--------------eEEe-CCCCcccCHHHHHHHhccCCCCccccccccc
Q 046132 302 PGKECVICLSEPRD--------------TTVL-PCRHMCMCSGCAKVLRFQTNRCPICRQPVER 350 (361)
Q Consensus 302 ~~~eCvICl~~~~d--------------~vlL-PCgH~cfC~~Ca~~l~~qs~~CPICR~~I~~ 350 (361)
++..|.||++...+ .+++ +|+|. ||..|+..|..++.+||+||+.+..
T Consensus 14 ~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~-FH~~Ci~~Wl~~~~~CP~CR~~~~~ 76 (81)
T 2ecl_A 14 ECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHS-FHNCCMSLWVKQNNRCPLCQQDWVV 76 (81)
T ss_dssp CCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCE-EEHHHHHHHTTTCCBCTTTCCBCCE
T ss_pred CCCCCcccChhhhccCcccccccCCCceEEEeCCCCCc-cChHHHHHHHHhCCCCCCcCCCcch
Confidence 34568888887755 4445 59999 9999999999888999999998753
No 44
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=98.79 E-value=2.5e-09 Score=86.00 Aligned_cols=48 Identities=25% Similarity=0.544 Sum_probs=43.5
Q ss_pred CCCeeeecccCCCCeEEe-CCCCcccCHHHHHHHhccCCCCccccccccc
Q 046132 302 PGKECVICLSEPRDTTVL-PCRHMCMCSGCAKVLRFQTNRCPICRQPVER 350 (361)
Q Consensus 302 ~~~eCvICl~~~~d~vlL-PCgH~cfC~~Ca~~l~~qs~~CPICR~~I~~ 350 (361)
+...|.||++...+.+++ +|||. ||..|+..|......||+||..+..
T Consensus 21 ~~~~C~IC~~~~~~p~~~~~CgH~-fC~~Ci~~~~~~~~~CP~Cr~~~~~ 69 (99)
T 2y43_A 21 DLLRCGICFEYFNIAMIIPQCSHN-YCSLCIRKFLSYKTQCPTCCVTVTE 69 (99)
T ss_dssp HHTBCTTTCSBCSSEEECTTTCCE-EEHHHHHHHHTTCCBCTTTCCBCCG
T ss_pred CCCCcccCChhhCCcCEECCCCCH-hhHHHHHHHHHCCCCCCCCCCcCCh
Confidence 356899999999999888 89999 9999999999888899999998864
No 45
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=98.79 E-value=2.1e-09 Score=84.08 Aligned_cols=51 Identities=27% Similarity=0.699 Sum_probs=40.9
Q ss_pred CCCCCeeeecccCC--CCeEEeC--CCCcccCHHHHHHHhcc-CCCCccccccccce
Q 046132 300 NDPGKECVICLSEP--RDTTVLP--CRHMCMCSGCAKVLRFQ-TNRCPICRQPVERL 351 (361)
Q Consensus 300 ~~~~~eCvICl~~~--~d~vlLP--CgH~cfC~~Ca~~l~~q-s~~CPICR~~I~~l 351 (361)
.+++.+|.||++.. .+.+++| |||. ||..|+..++.. ...||+||..+...
T Consensus 8 ~~~~~~CpICle~~~~~d~~~~p~~CGH~-fC~~Cl~~~~~~~~~~CP~CR~~~~~~ 63 (78)
T 1e4u_A 8 KEDPVECPLCMEPLEIDDINFFPCTCGYQ-ICRFCWHRIRTDENGLCPACRKPYPED 63 (78)
T ss_dssp CCCCCBCTTTCCBCCTTTTTCCSSTTSCC-CCHHHHHHHTTSSCSBCTTTCCBCSSC
T ss_pred cccCCcCCccCccCccccccccccCCCCC-cCHHHHHHHHhcCCCCCCCCCCccCCC
Confidence 34567899999976 4566776 9999 999999997643 46799999999764
No 46
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.78 E-value=2.2e-09 Score=79.86 Aligned_cols=47 Identities=28% Similarity=0.779 Sum_probs=38.2
Q ss_pred CCeeeeccc-CCCCe----EEeCCCCcccCHHHHHHHhcc-CCCCccccccccc
Q 046132 303 GKECVICLS-EPRDT----TVLPCRHMCMCSGCAKVLRFQ-TNRCPICRQPVER 350 (361)
Q Consensus 303 ~~eCvICl~-~~~d~----vlLPCgH~cfC~~Ca~~l~~q-s~~CPICR~~I~~ 350 (361)
+..|.||++ ...+. ++++|||. ||..|+..|..+ ...||+||..+..
T Consensus 3 ~~~C~IC~~~~~~~~~~~~~~~~CgH~-fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 55 (65)
T 1g25_A 3 DQGCPRCKTTKYRNPSLKLMVNVCGHT-LCESCVDLLFVRGAGNCPECGTPLRK 55 (65)
T ss_dssp TTCCSTTTTHHHHCSSCCEEECTTCCC-EEHHHHHHHHHTTSSSCTTTCCCCSS
T ss_pred CCcCCcCCCCccCCCccCeecCCCCCH-hHHHHHHHHHHcCCCcCCCCCCcccc
Confidence 467999999 44444 57899999 999999998544 4679999999864
No 47
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=98.77 E-value=5.4e-09 Score=82.67 Aligned_cols=52 Identities=13% Similarity=0.025 Sum_probs=46.3
Q ss_pred CCCCCCCeeeecccCCCCeEEeCCCCcccCHHHHHHHhccCCCCccccccccc
Q 046132 298 DANDPGKECVICLSEPRDTTVLPCRHMCMCSGCAKVLRFQTNRCPICRQPVER 350 (361)
Q Consensus 298 ~~~~~~~eCvICl~~~~d~vlLPCgH~cfC~~Ca~~l~~qs~~CPICR~~I~~ 350 (361)
....+...|.||++-.+|+++++|||. ||..|+..|+....+||+||.++..
T Consensus 9 ~~~p~~~~CpI~~~~m~dPV~~~cGht-f~r~~I~~~l~~~~~cP~~~~~l~~ 60 (85)
T 2kr4_A 9 SDAPDEFRDPLMDTLMTDPVRLPSGTV-MDRSIILRHLLNSPTDPFNRQMLTE 60 (85)
T ss_dssp TTCCTTTBCTTTCSBCSSEEECTTSCE-EEHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred hcCchheECcccCchhcCCeECCCCCE-ECHHHHHHHHhcCCCCCCCcCCCCh
Confidence 344567899999999999999999999 9999999998877899999998864
No 48
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.76 E-value=7.7e-10 Score=80.68 Aligned_cols=45 Identities=36% Similarity=0.817 Sum_probs=39.5
Q ss_pred CCCCeeeecccCCCCeEEeCCCCcccCHHHHHHHhccCCCCcccccccc
Q 046132 301 DPGKECVICLSEPRDTTVLPCRHMCMCSGCAKVLRFQTNRCPICRQPVE 349 (361)
Q Consensus 301 ~~~~eCvICl~~~~d~vlLPCgH~cfC~~Ca~~l~~qs~~CPICR~~I~ 349 (361)
++...|.||++...+.++++|||. ||..|+..| ...||+||+.+.
T Consensus 4 ~~~~~C~IC~~~~~~p~~l~CgH~-fC~~Ci~~~---~~~CP~Cr~~~~ 48 (56)
T 1bor_A 4 FQFLRCQQCQAEAKCPKLLPCLHT-LCSGCLEAS---GMQCPICQAPWP 48 (56)
T ss_dssp CCCSSCSSSCSSCBCCSCSTTSCC-SBTTTCSSS---SSSCSSCCSSSS
T ss_pred ccCCCceEeCCccCCeEEcCCCCc-ccHHHHccC---CCCCCcCCcEee
Confidence 455789999999999999999999 999998763 468999999875
No 49
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=98.76 E-value=9.8e-10 Score=90.68 Aligned_cols=49 Identities=29% Similarity=0.675 Sum_probs=42.9
Q ss_pred CCCCeeeecccCCCCeEEeCCCCcccCHHHHHHHhcc-CCCCccccccccc
Q 046132 301 DPGKECVICLSEPRDTTVLPCRHMCMCSGCAKVLRFQ-TNRCPICRQPVER 350 (361)
Q Consensus 301 ~~~~eCvICl~~~~d~vlLPCgH~cfC~~Ca~~l~~q-s~~CPICR~~I~~ 350 (361)
.++..|.||++...++++++|||. ||..|+..|... ...||+||..+..
T Consensus 13 ~~~~~C~iC~~~~~~p~~~~CgH~-fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 62 (115)
T 3l11_A 13 LSECQCGICMEILVEPVTLPCNHT-LCKPCFQSTVEKASLCCPFCRRRVSS 62 (115)
T ss_dssp HHHHBCTTTCSBCSSCEECTTSCE-ECHHHHCCCCCTTTSBCTTTCCBCHH
T ss_pred CCCCCCccCCcccCceeEcCCCCH-HhHHHHHHHHhHCcCCCCCCCcccCc
Confidence 345789999999999999999999 999999998765 5689999998863
No 50
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.75 E-value=2.6e-09 Score=87.08 Aligned_cols=47 Identities=30% Similarity=0.738 Sum_probs=41.7
Q ss_pred CCeeeecccCCCCeEEeCCCCcccCHHHHHHHhccC---CCCccccccccc
Q 046132 303 GKECVICLSEPRDTTVLPCRHMCMCSGCAKVLRFQT---NRCPICRQPVER 350 (361)
Q Consensus 303 ~~eCvICl~~~~d~vlLPCgH~cfC~~Ca~~l~~qs---~~CPICR~~I~~ 350 (361)
...|.||++...+.++++|||. ||..|+..|.... ..||+||..+..
T Consensus 21 ~~~C~IC~~~~~~p~~~~CgH~-fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 70 (112)
T 1jm7_A 21 ILECPICLELIKEPVSTKCDHI-FCKFCMLKLLNQKKGPSQCPLCKNDITK 70 (112)
T ss_dssp HTSCSSSCCCCSSCCBCTTSCC-CCSHHHHHHHHSSSSSCCCTTTSCCCCT
T ss_pred CCCCcccChhhcCeEECCCCCH-HHHHHHHHHHHhCCCCCCCcCCCCcCCH
Confidence 4679999999999999999999 9999999998754 389999998864
No 51
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=98.74 E-value=3.2e-09 Score=88.28 Aligned_cols=50 Identities=26% Similarity=0.593 Sum_probs=44.1
Q ss_pred CCCCCeeeecccCCCCeEEeCCCCcccCHHHHHHHhccCC-CCccccccccc
Q 046132 300 NDPGKECVICLSEPRDTTVLPCRHMCMCSGCAKVLRFQTN-RCPICRQPVER 350 (361)
Q Consensus 300 ~~~~~eCvICl~~~~d~vlLPCgH~cfC~~Ca~~l~~qs~-~CPICR~~I~~ 350 (361)
.++...|.||++...+.++++|||. ||..|+..|..... +||+||..+..
T Consensus 15 ~~~~~~C~IC~~~~~~p~~~~CgH~-fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 65 (118)
T 3hct_A 15 LESKYECPICLMALREAVQTPCGHR-FCKACIIKSIRDAGHKCPVDNEILLE 65 (118)
T ss_dssp CCGGGBCTTTCSBCSSEEECTTSCE-EEHHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred CCCCCCCCcCChhhcCeEECCcCCh-hhHHHHHHHHhhCCCCCCCCCCCcCH
Confidence 3456789999999999999999999 99999999877654 89999999865
No 52
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=98.72 E-value=5e-09 Score=91.28 Aligned_cols=49 Identities=22% Similarity=0.478 Sum_probs=43.1
Q ss_pred CCCeeeecccCCCCeEEeCCCCcccCHHHHHHHhccCC-CCccccccccce
Q 046132 302 PGKECVICLSEPRDTTVLPCRHMCMCSGCAKVLRFQTN-RCPICRQPVERL 351 (361)
Q Consensus 302 ~~~eCvICl~~~~d~vlLPCgH~cfC~~Ca~~l~~qs~-~CPICR~~I~~l 351 (361)
+...|.||++...+.++++|||. ||..|+..|..... .||+||..+...
T Consensus 77 ~~~~C~IC~~~~~~pv~~~CgH~-fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 126 (150)
T 1z6u_A 77 QSFMCVCCQELVYQPVTTECFHN-VCKDCLQRSFKAQVFSCPACRHDLGQN 126 (150)
T ss_dssp HHTBCTTTSSBCSSEEECTTSCE-EEHHHHHHHHHTTCCBCTTTCCBCCTT
T ss_pred cCCEeecCChhhcCCEEcCCCCc-hhHHHHHHHHHhCCCcCCCCCccCCCC
Confidence 34689999999999999999999 99999999887654 799999998753
No 53
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=98.70 E-value=1.5e-08 Score=82.44 Aligned_cols=50 Identities=16% Similarity=0.040 Sum_probs=45.2
Q ss_pred CCCCCeeeecccCCCCeEEeCCC-CcccCHHHHHHHhccCCCCccccccccc
Q 046132 300 NDPGKECVICLSEPRDTTVLPCR-HMCMCSGCAKVLRFQTNRCPICRQPVER 350 (361)
Q Consensus 300 ~~~~~eCvICl~~~~d~vlLPCg-H~cfC~~Ca~~l~~qs~~CPICR~~I~~ 350 (361)
..+...|.||++-.+|+|+++|| |. ||..|+..|+....+||+||.++..
T Consensus 19 ~p~~~~CpI~~~~m~dPV~~~cG~ht-f~r~cI~~~l~~~~~cP~~~~~l~~ 69 (98)
T 1wgm_A 19 ACDEFLDPIMSTLMCDPVVLPSSRVT-VDRSTIARHLLSDQTDPFNRSPLTM 69 (98)
T ss_dssp CCTTTBCTTTCSBCSSEEECTTTCCE-EEHHHHHHHTTTSCBCTTTCSBCCT
T ss_pred CcHhcCCcCccccccCCeECCCCCeE-ECHHHHHHHHHhCCCCCCCCCCCCh
Confidence 34568999999999999999999 99 9999999998877889999998864
No 54
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.66 E-value=6.7e-09 Score=86.24 Aligned_cols=54 Identities=26% Similarity=0.631 Sum_probs=45.7
Q ss_pred CCCeeeecccCCCCe-------EEeCCCCcccCHHHHHHHhccCCCCccccccccc--eEEEEc
Q 046132 302 PGKECVICLSEPRDT-------TVLPCRHMCMCSGCAKVLRFQTNRCPICRQPVER--LLEIKV 356 (361)
Q Consensus 302 ~~~eCvICl~~~~d~-------vlLPCgH~cfC~~Ca~~l~~qs~~CPICR~~I~~--ll~I~v 356 (361)
+..+|.||++...+. ++++|||. ||..|+..|......||+||..+.. +.+|++
T Consensus 71 ~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~-fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~~~ 133 (133)
T 4ap4_A 71 GTVSCPICMDGYSEIVQNGRLIVSTECGHV-FCSQCLRDSLKNANTCPTCRKKINHKRYHPIYI 133 (133)
T ss_dssp SSCBCTTTCCBHHHHHHTTCCEEEETTSBE-EEHHHHHHHHHHCSBCTTTCCBCCGGGEEEECC
T ss_pred CCCCCCCCCCccccccccCcceEeCCCCCh-hhHHHHHHHHHcCCCCCCCCCcCChhcceeeeC
Confidence 456899999987664 89999999 9999999999888999999999864 556553
No 55
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=98.61 E-value=2.3e-08 Score=82.59 Aligned_cols=45 Identities=22% Similarity=0.409 Sum_probs=37.9
Q ss_pred CeeeecccCCCC------------------eEEeCCCCcccCHHHHHHHhccCCCCcccccccc
Q 046132 304 KECVICLSEPRD------------------TTVLPCRHMCMCSGCAKVLRFQTNRCPICRQPVE 349 (361)
Q Consensus 304 ~eCvICl~~~~d------------------~vlLPCgH~cfC~~Ca~~l~~qs~~CPICR~~I~ 349 (361)
..|.||++...+ .++++|+|. ||..|+..|.....+||+||+.+.
T Consensus 38 d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~-FH~~Ci~~Wl~~~~~CP~Cr~~~~ 100 (106)
T 3dpl_R 38 DNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHA-FHFHCISRWLKTRQVCPLDNREWE 100 (106)
T ss_dssp CCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCE-EEHHHHHHHHTTCSBCSSSCSBCC
T ss_pred CCCccCChhHhCcCchhhccccccCCccceEeecccCcE-ECHHHHHHHHHcCCcCcCCCCcce
Confidence 468888876553 367899999 999999999988899999999863
No 56
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=98.61 E-value=1.6e-08 Score=83.52 Aligned_cols=48 Identities=27% Similarity=0.548 Sum_probs=43.0
Q ss_pred CCCeeeecccCCCCeEEeCCCCcccCHHHHHHHhcc-CCCCccccccccc
Q 046132 302 PGKECVICLSEPRDTTVLPCRHMCMCSGCAKVLRFQ-TNRCPICRQPVER 350 (361)
Q Consensus 302 ~~~eCvICl~~~~d~vlLPCgH~cfC~~Ca~~l~~q-s~~CPICR~~I~~ 350 (361)
+...|.||++...+++.++|||. ||..|+..|... ...||+||..+..
T Consensus 22 ~~~~C~IC~~~~~~p~~~~CgH~-fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 70 (116)
T 1rmd_A 22 KSISCQICEHILADPVETSCKHL-FCRICILRCLKVMGSYCPSCRYPCFP 70 (116)
T ss_dssp HHTBCTTTCSBCSSEEECTTSCE-EEHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred CCCCCCCCCcHhcCcEEcCCCCc-ccHHHHHHHHhHCcCcCCCCCCCCCH
Confidence 35689999999999999999999 999999998876 5789999999864
No 57
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=98.57 E-value=1.3e-08 Score=87.93 Aligned_cols=48 Identities=21% Similarity=0.385 Sum_probs=42.4
Q ss_pred CCCCCeeeecccCCCCeEEeCCCCcccCHHHHHHHhccCC-CCccccccc
Q 046132 300 NDPGKECVICLSEPRDTTVLPCRHMCMCSGCAKVLRFQTN-RCPICRQPV 348 (361)
Q Consensus 300 ~~~~~eCvICl~~~~d~vlLPCgH~cfC~~Ca~~l~~qs~-~CPICR~~I 348 (361)
.++...|.||++..++.+.++|||. ||..|+..|+.... .||+||.++
T Consensus 28 l~~~~~C~IC~~~~~~pv~~~CgH~-FC~~Ci~~~~~~~~~~CP~Cr~~~ 76 (141)
T 3knv_A 28 LEAKYLCSACRNVLRRPFQAQCGHR-YCSFCLASILSSGPQNCAACVHEG 76 (141)
T ss_dssp CCGGGBCTTTCSBCSSEEECTTSCE-EEHHHHHHHGGGSCEECHHHHHTT
T ss_pred CCcCcCCCCCChhhcCcEECCCCCc-cCHHHHHHHHhcCCCCCCCCCCcc
Confidence 3456789999999999999999999 99999999986554 899999975
No 58
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.45 E-value=2.3e-08 Score=82.91 Aligned_cols=45 Identities=29% Similarity=0.652 Sum_probs=40.6
Q ss_pred CCCeeeecccCCCCeEEe-CCCCcccCHHHHHHHhccCCCCcccccccc
Q 046132 302 PGKECVICLSEPRDTTVL-PCRHMCMCSGCAKVLRFQTNRCPICRQPVE 349 (361)
Q Consensus 302 ~~~eCvICl~~~~d~vlL-PCgH~cfC~~Ca~~l~~qs~~CPICR~~I~ 349 (361)
+...|.||++...+++++ +|||. ||..|+..|.. ..||+||..+.
T Consensus 21 ~~~~C~IC~~~~~~pv~~~~CgH~-fC~~Ci~~~~~--~~CP~Cr~~~~ 66 (117)
T 1jm7_B 21 KLLRCSRCTNILREPVCLGGCEHI-FCSNCVSDCIG--TGCPVCYTPAW 66 (117)
T ss_dssp HTTSCSSSCSCCSSCBCCCSSSCC-BCTTTGGGGTT--TBCSSSCCBCS
T ss_pred hCCCCCCCChHhhCccEeCCCCCH-HHHHHHHHHhc--CCCcCCCCcCc
Confidence 357899999999999999 99999 99999999875 68999999884
No 59
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.44 E-value=8.3e-08 Score=89.05 Aligned_cols=50 Identities=12% Similarity=0.031 Sum_probs=43.5
Q ss_pred CCCCCeeeecccCCCCeEEeCCCCcccCHHHHHHHhccC-CCCccccccccc
Q 046132 300 NDPGKECVICLSEPRDTTVLPCRHMCMCSGCAKVLRFQT-NRCPICRQPVER 350 (361)
Q Consensus 300 ~~~~~eCvICl~~~~d~vlLPCgH~cfC~~Ca~~l~~qs-~~CPICR~~I~~ 350 (361)
......|.||++-.+|+|+++|||. ||..|+..|+... ..||+||.++..
T Consensus 205 ~~~~~~c~i~~~~~~dPv~~~~gh~-f~~~~i~~~~~~~~~~cP~~~~~~~~ 255 (281)
T 2c2l_A 205 IPDYLCGKISFELMREPCITPSGIT-YDRKDIEEHLQRVGHFNPVTRSPLTQ 255 (281)
T ss_dssp CCSTTBCTTTCSBCSSEEECSSCCE-EETTHHHHHHHHTCSSCTTTCCCCCG
T ss_pred CCcccCCcCcCCHhcCCeECCCCCE-ECHHHHHHHHHHCCCCCcCCCCCCch
Confidence 3456789999999999999999999 9999999987654 449999999863
No 60
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=98.43 E-value=7.3e-08 Score=84.60 Aligned_cols=50 Identities=26% Similarity=0.598 Sum_probs=43.8
Q ss_pred CCCCCeeeecccCCCCeEEeCCCCcccCHHHHHHHhccC-CCCccccccccc
Q 046132 300 NDPGKECVICLSEPRDTTVLPCRHMCMCSGCAKVLRFQT-NRCPICRQPVER 350 (361)
Q Consensus 300 ~~~~~eCvICl~~~~d~vlLPCgH~cfC~~Ca~~l~~qs-~~CPICR~~I~~ 350 (361)
.++...|.||++...+++.++|||. ||..|+..|.... .+||+||..+..
T Consensus 15 ~~~~~~C~IC~~~~~~pv~~~CgH~-fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 65 (170)
T 3hcs_A 15 LESKYECPICLMALREAVQTPCGHR-FCKACIIKSIRDAGHKCPVDNEILLE 65 (170)
T ss_dssp CCGGGBCTTTCSBCSSEEECTTSCE-EEHHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred CCCCCCCCCCChhhcCcEECCCCCH-HHHHHHHHHHHhCCCCCCCCccCcch
Confidence 3456789999999999999999999 9999999987654 489999999865
No 61
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.43 E-value=7.8e-08 Score=75.58 Aligned_cols=52 Identities=19% Similarity=0.482 Sum_probs=41.5
Q ss_pred CCCCeeeecccCC--CCeEEeCCC-----CcccCHHHHHHHhccC--CCCccccccccceEE
Q 046132 301 DPGKECVICLSEP--RDTTVLPCR-----HMCMCSGCAKVLRFQT--NRCPICRQPVERLLE 353 (361)
Q Consensus 301 ~~~~eCvICl~~~--~d~vlLPCg-----H~cfC~~Ca~~l~~qs--~~CPICR~~I~~ll~ 353 (361)
.++..|.||+++. .+.+++||+ |. |+..|+..|...+ ..||+||..+....+
T Consensus 13 ~~~~~C~IC~~~~~~~~~l~~pC~C~Gs~h~-fH~~Cl~~Wl~~~~~~~CplCr~~~~~~~~ 73 (80)
T 2d8s_A 13 SSQDICRICHCEGDDESPLITPCHCTGSLHF-VHQACLQQWIKSSDTRCCELCKYEFIMETK 73 (80)
T ss_dssp TTSCCCSSSCCCCCSSSCEECSSSCCSSSCC-EETTHHHHHHHHHCCSBCSSSCCBCCCCCC
T ss_pred CCCCCCeEcCccccCCCeeEeccccCCcCCe-eCHHHHHHHHhhCCCCCCCCCCCeeecCcc
Confidence 3456899999865 456789997 99 9999999998765 489999998865433
No 62
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=98.32 E-value=8.7e-08 Score=80.69 Aligned_cols=45 Identities=22% Similarity=0.400 Sum_probs=0.0
Q ss_pred CeeeecccCCCCe------------------EEeCCCCcccCHHHHHHHhccCCCCcccccccc
Q 046132 304 KECVICLSEPRDT------------------TVLPCRHMCMCSGCAKVLRFQTNRCPICRQPVE 349 (361)
Q Consensus 304 ~eCvICl~~~~d~------------------vlLPCgH~cfC~~Ca~~l~~qs~~CPICR~~I~ 349 (361)
..|.||++...+. ++++|+|. ||..|+..|......||+||+.+.
T Consensus 49 d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~-FH~~CI~~Wl~~~~~CP~Cr~~~~ 111 (117)
T 4a0k_B 49 DNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHA-FHFHCISRWLKTRQVCPLDNREWE 111 (117)
T ss_dssp ----------------------------------------------------------------
T ss_pred CcCeECChhhcCcChhhhcccccccccccccccCCcCce-EcHHHHHHHHHcCCcCCCCCCeee
Confidence 4699999876542 33689999 999999999988889999999853
No 63
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.26 E-value=4.7e-07 Score=72.57 Aligned_cols=46 Identities=20% Similarity=0.348 Sum_probs=39.8
Q ss_pred CCCCeeeecccCCCCeEEeC-CCCcccCHHHHHHHhccC------CCCcc--cccc
Q 046132 301 DPGKECVICLSEPRDTTVLP-CRHMCMCSGCAKVLRFQT------NRCPI--CRQP 347 (361)
Q Consensus 301 ~~~~eCvICl~~~~d~vlLP-CgH~cfC~~Ca~~l~~qs------~~CPI--CR~~ 347 (361)
.....|.||++..+|+|+++ |||. ||..|+..|+... .+||+ |+..
T Consensus 5 ~~~~~CPI~~~~~~dPV~~~~cGh~-f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~ 59 (94)
T 2yu4_A 5 SSGFTCPITKEEMKKPVKNKVCGHT-YEEDAIVRMIESRQKRKKKAYCPQIGCSHT 59 (94)
T ss_dssp SSCCBCTTTCSBCSSEEEESSSCCE-EEHHHHHHHHHHHHTTTCCBCCCSTTCCCC
T ss_pred CcEeECcCcCchhcCCEEcCCCCCe-ecHHHHHHHHHHccCcCCCCCCCcCcCccc
Confidence 34578999999999999997 9999 9999999987643 48999 9855
No 64
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=98.17 E-value=8.7e-07 Score=79.74 Aligned_cols=50 Identities=12% Similarity=0.022 Sum_probs=43.8
Q ss_pred CCCCCeeeecccCCCCeEEeCCCCcccCHHHHHHHhccC-CCCccccccccc
Q 046132 300 NDPGKECVICLSEPRDTTVLPCRHMCMCSGCAKVLRFQT-NRCPICRQPVER 350 (361)
Q Consensus 300 ~~~~~eCvICl~~~~d~vlLPCgH~cfC~~Ca~~l~~qs-~~CPICR~~I~~ 350 (361)
..+...|.||++-.+|+|+++|||. ||..|+..|+... ..||+||.++..
T Consensus 103 ip~~f~CPI~~elm~DPV~~~~Ght-fer~~I~~~l~~~~~tcP~t~~~l~~ 153 (179)
T 2f42_A 103 IPDYLCGKISFELMREPCITPSGIT-YDRKDIEEHLQRVGHFDPVTRSPLTQ 153 (179)
T ss_dssp CCGGGBCTTTCSBCSSEEECTTSCE-EEHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred CcHhhcccCccccCCCCeECCCCCE-ECHHHHHHHHHhCCCCCCCCcCCCCh
Confidence 4566899999999999999999999 9999999988654 469999998864
No 65
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=97.88 E-value=8.4e-06 Score=66.68 Aligned_cols=50 Identities=28% Similarity=0.695 Sum_probs=40.0
Q ss_pred eeecccCCCC-eEEeCCCCcccCHHHHHHHhcc-CCCCccccccccceEEEEc
Q 046132 306 CVICLSEPRD-TTVLPCRHMCMCSGCAKVLRFQ-TNRCPICRQPVERLLEIKV 356 (361)
Q Consensus 306 CvICl~~~~d-~vlLPCgH~cfC~~Ca~~l~~q-s~~CPICR~~I~~ll~I~v 356 (361)
|.+|---... ..++||.|+ ||.+|+..|..+ .+.||+||.+|..+-++.+
T Consensus 4 C~~C~~Pi~iygRmIPCkHv-FCydCa~~~~~~~~k~Cp~C~~~V~rVe~~~~ 55 (101)
T 3vk6_A 4 CDKCGLPIKVYGRMIPCKHV-FCYDCAILHEKKGDKMCPGCSDPVQRIEQCTR 55 (101)
T ss_dssp CTTTCSBCSEEEEEETTCCE-EEHHHHHHHHHTTCCBCTTTCCBCSEEEEEEG
T ss_pred cCccCCCeEEEeeecccccc-HHHHHHHHHHhccCCCCcCcCCeeeeeEEecc
Confidence 6667655544 358899998 999999998755 4789999999999887755
No 66
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=97.85 E-value=8.5e-06 Score=77.36 Aligned_cols=48 Identities=19% Similarity=0.292 Sum_probs=41.2
Q ss_pred CCCCeeeecccCCCCeEEe-CCCCcccCHHHHHHHhccC--CCCcc--cccccc
Q 046132 301 DPGKECVICLSEPRDTTVL-PCRHMCMCSGCAKVLRFQT--NRCPI--CRQPVE 349 (361)
Q Consensus 301 ~~~~eCvICl~~~~d~vlL-PCgH~cfC~~Ca~~l~~qs--~~CPI--CR~~I~ 349 (361)
.....|.||++..+++|.. .|||. ||..|+..|+... ..||+ ||..+.
T Consensus 179 ~~el~CPIcl~~f~DPVts~~CGHs-FcR~cI~~~~~~~~~~~CPvtGCr~~l~ 231 (267)
T 3htk_C 179 KIELTCPITCKPYEAPLISRKCNHV-FDRDGIQNYLQGYTTRDCPQAACSQVVS 231 (267)
T ss_dssp BCCSBCTTTSSBCSSEEEESSSCCE-EEHHHHHHHSTTCSCEECSGGGCSCEEC
T ss_pred ceeeECcCccCcccCCeeeCCCCCc-ccHHHHHHHHHhCCCCCCCcccccCcCc
Confidence 4457899999999999985 99999 9999999987653 46999 999764
No 67
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=97.83 E-value=8.2e-06 Score=60.58 Aligned_cols=48 Identities=19% Similarity=0.361 Sum_probs=39.1
Q ss_pred CCCCeeeecccCCCCeEEeCCCC-----cccCHHHHHHHhcc--CCCCcccccccc
Q 046132 301 DPGKECVICLSEPRDTTVLPCRH-----MCMCSGCAKVLRFQ--TNRCPICRQPVE 349 (361)
Q Consensus 301 ~~~~eCvICl~~~~d~vlLPCgH-----~cfC~~Ca~~l~~q--s~~CPICR~~I~ 349 (361)
++...|.||+++..+.+++||.+ . +...|+..|... +..|++||..+.
T Consensus 4 ~~~~~CrIC~~~~~~~l~~PC~C~gs~~~-~H~~Cl~~W~~~~~~~~C~~C~~~~~ 58 (60)
T 1vyx_A 4 EDVPVCWICNEELGNERFRACGCTGELEN-VHRSCLSTWLTISRNTACQICGVVYN 58 (60)
T ss_dssp CSCCEETTTTEECSCCCCCSCCCSSGGGS-CCHHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred CCCCEeEEeecCCCCceecCcCCCCchhh-hHHHHHHHHHHhCCCCccCCCCCeee
Confidence 35578999998877777899764 5 899999999864 468999998764
No 68
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=97.77 E-value=9.3e-06 Score=60.40 Aligned_cols=52 Identities=21% Similarity=0.287 Sum_probs=44.5
Q ss_pred CCeeeecccCCCCeEEe-CCCCcccCHHHHHHHhccCCCCccccccccc--eEEEE
Q 046132 303 GKECVICLSEPRDTTVL-PCRHMCMCSGCAKVLRFQTNRCPICRQPVER--LLEIK 355 (361)
Q Consensus 303 ~~eCvICl~~~~d~vlL-PCgH~cfC~~Ca~~l~~qs~~CPICR~~I~~--ll~I~ 355 (361)
...|.||++-.+|++++ +|||. ||.+|+..|.....+||+++.++.. ++.++
T Consensus 3 ~~~CpIs~~~m~dPV~~~~sG~~-yer~~I~~~l~~~~~cP~t~~~L~~~~Lip~~ 57 (61)
T 2bay_A 3 HMLCAISGKVPRRPVLSPKSRTI-FEKSLLEQYVKDTGNDPITNEPLSIEEIVEIV 57 (61)
T ss_dssp -CCCTTTCSCCSSEEEETTTTEE-EEHHHHHHHHHHHSBCTTTCCBCCGGGCEECC
T ss_pred eEEecCCCCCCCCCEEeCCCCcE-EcHHHHHHHHHhCCCCcCCcCCCChhhcEECc
Confidence 36799999999999999 89999 9999999998777789999999854 44443
No 69
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=97.75 E-value=7.8e-06 Score=64.97 Aligned_cols=45 Identities=24% Similarity=0.572 Sum_probs=34.4
Q ss_pred CCCeeeecccCCCCeEE---eCCCCcccCHHHHHHHhcc--------CCCCcc--cccc
Q 046132 302 PGKECVICLSEPRDTTV---LPCRHMCMCSGCAKVLRFQ--------TNRCPI--CRQP 347 (361)
Q Consensus 302 ~~~eCvICl~~~~d~vl---LPCgH~cfC~~Ca~~l~~q--------s~~CPI--CR~~ 347 (361)
+..+|.||++...+..+ .+|||. ||.+|+..++.. ..+||. ||..
T Consensus 4 ~~~~C~IC~~~~~~~~~~~l~~CgH~-FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~ 61 (94)
T 1wim_A 4 GSSGCKLCLGEYPVEQMTTIAQCQCI-FCTLCLKQYVELLIKEGLETAISCPDAACPKQ 61 (94)
T ss_dssp SBCCCSSSCCCCBGGGEEEETTTTEE-EEHHHHHHHHHHHHHHCSCCCEECSCTTCSSC
T ss_pred CCcCCcccCcccccccceEcCCCCCc-ccHHHHHHHHHHHhhcCCcccccCccccCCCC
Confidence 34689999998766432 379999 999999885432 247999 9987
No 70
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.57 E-value=0.0001 Score=57.13 Aligned_cols=48 Identities=25% Similarity=0.344 Sum_probs=39.3
Q ss_pred CCCeeeecccCCCCeEE-eCCCCcccCHHHHHHHhccC--CCCccccccccc
Q 046132 302 PGKECVICLSEPRDTTV-LPCRHMCMCSGCAKVLRFQT--NRCPICRQPVER 350 (361)
Q Consensus 302 ~~~eCvICl~~~~d~vl-LPCgH~cfC~~Ca~~l~~qs--~~CPICR~~I~~ 350 (361)
...+|.||++....... .-|+|. |...|+.+|.... .+||+||+....
T Consensus 14 ~i~~C~IC~~~i~~g~~C~~C~h~-fH~~Ci~kWl~~~~~~~CP~Cr~~w~~ 64 (74)
T 2ct0_A 14 AVKICNICHSLLIQGQSCETCGIR-MHLPCVAKYFQSNAEPRCPHCNDYWPH 64 (74)
T ss_dssp SSCBCSSSCCBCSSSEECSSSCCE-ECHHHHHHHSTTCSSCCCTTTCSCCCS
T ss_pred CCCcCcchhhHcccCCccCCCCch-hhHHHHHHHHHhcCCCCCCCCcCcCCC
Confidence 44689999997765443 379999 9999999998776 789999998764
No 71
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=97.29 E-value=3.6e-05 Score=75.76 Aligned_cols=50 Identities=18% Similarity=0.415 Sum_probs=38.3
Q ss_pred CCCCCeeeecccCCCCeE--------EeCCCCcccCHHHHHHHhccC-----------CCCccccccccc
Q 046132 300 NDPGKECVICLSEPRDTT--------VLPCRHMCMCSGCAKVLRFQT-----------NRCPICRQPVER 350 (361)
Q Consensus 300 ~~~~~eCvICl~~~~d~v--------lLPCgH~cfC~~Ca~~l~~qs-----------~~CPICR~~I~~ 350 (361)
++...+|.||++...+.- -..|+|. |+..|+..|.... ..||.||++|..
T Consensus 305 ee~~~ECaICys~~l~~g~lPdk~C~n~~C~h~-FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs~ 373 (381)
T 3k1l_B 305 DNEELRCNICFAYRLDGGEVPLVSCDNAKCVLK-CHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLST 373 (381)
T ss_dssp CCSCCSCSSSCCSSCTTCCCCCBCCSCTTCCCC-BCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEEG
T ss_pred ccCCccCcccceeecCCCCCccccccCCccCCc-cchHHHHHHHHhCCCccccccccCCCCCCCCCcCCc
Confidence 445679999998766511 1369999 9999999997532 469999998864
No 72
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=95.36 E-value=0.0046 Score=49.97 Aligned_cols=50 Identities=32% Similarity=0.759 Sum_probs=40.5
Q ss_pred CeeeecccCCCCeEEeCCC-CcccCHHHHHHHhccCCCCccccccccceEEEEc
Q 046132 304 KECVICLSEPRDTTVLPCR-HMCMCSGCAKVLRFQTNRCPICRQPVERLLEIKV 356 (361)
Q Consensus 304 ~eCvICl~~~~d~vlLPCg-H~cfC~~Ca~~l~~qs~~CPICR~~I~~ll~I~v 356 (361)
.-|..|.-+.+.. +-|. |. +|..|+..|...+..|+||..++-..|++..
T Consensus 29 ~nCKsCWf~~k~L--V~C~dHY-LCl~CLtlmL~~SdrCpIC~~pLPtkl~~~~ 79 (99)
T 2ko5_A 29 QFCKSCWFENKGL--VECNNHY-LCLNCLTLLLSVSNRCPICKMPLPTKLRPSA 79 (99)
T ss_dssp CCCCSSCSCCSSE--EECSSCE-EEHHHHHHTCSSSSEETTTTEECCCCSCTTT
T ss_pred ccChhhccccCCe--eeecchh-hHHHHHHHHHhhccCCcccCCcCCcceecCc
Confidence 4699999877743 3455 88 9999999999999999999999887666543
No 73
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=91.88 E-value=0.13 Score=47.82 Aligned_cols=47 Identities=26% Similarity=0.358 Sum_probs=36.7
Q ss_pred CCeeeecccCCCCeEEe-CCCCcccCHHHHHHHhccC--CCCccccccccc
Q 046132 303 GKECVICLSEPRDTTVL-PCRHMCMCSGCAKVLRFQT--NRCPICRQPVER 350 (361)
Q Consensus 303 ~~eCvICl~~~~d~vlL-PCgH~cfC~~Ca~~l~~qs--~~CPICR~~I~~ 350 (361)
-.+|.||.+-......- .|+|. |...|+..|.... .+||.|+.....
T Consensus 180 i~~C~iC~~iv~~g~~C~~C~~~-~H~~C~~~~~~~~~~~~CP~C~~~W~~ 229 (238)
T 3nw0_A 180 VKICNICHSLLIQGQSCETCGIR-MHLPCVAKYFQSNAEPRCPHCNDYWPH 229 (238)
T ss_dssp CCBCTTTCSBCSSCEECSSSCCE-ECHHHHHHHTTTCSSCBCTTTCCBCCS
T ss_pred CCcCcchhhHHhCCcccCccChH-HHHHHHHHHHHhCCCCCCCCCCCCCCC
Confidence 57899999866655433 39999 9999999987654 489999987654
No 74
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=90.68 E-value=0.087 Score=41.64 Aligned_cols=30 Identities=23% Similarity=0.625 Sum_probs=25.2
Q ss_pred CCeeeecccC-CCCeEE--eCCCCcccCHHHHHH
Q 046132 303 GKECVICLSE-PRDTTV--LPCRHMCMCSGCAKV 333 (361)
Q Consensus 303 ~~eCvICl~~-~~d~vl--LPCgH~cfC~~Ca~~ 333 (361)
+..|.||.+. .++++. +.|+|. ||..|+..
T Consensus 3 e~~C~~C~~~~~~~av~~C~~C~~~-~C~~Cl~~ 35 (101)
T 2jun_A 3 KVLCQFCDQDPAQDAVKTCVTCEVS-YCDECLKA 35 (101)
T ss_dssp CCBCTTCCSSSCCBCCEEETTTTEE-ECHHHHHH
T ss_pred CCCCcCCCCCCCCCceEECCcCChH-HhHHHCHH
Confidence 4679999975 566665 899999 99999997
No 75
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=80.44 E-value=0.91 Score=35.70 Aligned_cols=33 Identities=27% Similarity=0.604 Sum_probs=27.9
Q ss_pred CCCCeeeecccCCCCeEEeCCC----CcccCHHHHHHH
Q 046132 301 DPGKECVICLSEPRDTTVLPCR----HMCMCSGCAKVL 334 (361)
Q Consensus 301 ~~~~eCvICl~~~~d~vlLPCg----H~cfC~~Ca~~l 334 (361)
.....|.+|.++..|+-++-|- |. ||+-|.+..
T Consensus 13 ~a~l~CtlC~erLEdtHFVQCPsv~~Hk-FCFpCsr~s 49 (93)
T 2cs3_A 13 SGPLCCTICHERLEDTHFVQCPSVPSHK-FCFPCSRES 49 (93)
T ss_dssp CCSCCCSSSCSCCSSTTSEECSSCSSCE-ECHHHHHHH
T ss_pred CCeeEeecchhhhccCceeeCCCccCCe-eeccccHHH
Confidence 3457899999999999888884 88 999999873
No 76
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=61.85 E-value=3.2 Score=31.26 Aligned_cols=34 Identities=18% Similarity=0.430 Sum_probs=25.7
Q ss_pred CCCCCeeeecccCCCCeEEeCC-CCcccCHHHHHHHh
Q 046132 300 NDPGKECVICLSEPRDTTVLPC-RHMCMCSGCAKVLR 335 (361)
Q Consensus 300 ~~~~~eCvICl~~~~d~vlLPC-gH~cfC~~Ca~~l~ 335 (361)
+++...|+||.+. .....+-| +-+ +|..|.+.+-
T Consensus 5 ~ee~pWC~ICneD-AtlrC~gCdgDL-YC~rC~rE~H 39 (67)
T 2d8v_A 5 SSGLPWCCICNED-ATLRCAGCDGDL-YCARCFREGH 39 (67)
T ss_dssp CCCCSSCTTTCSC-CCEEETTTTSEE-ECSSHHHHHT
T ss_pred CcCCCeeEEeCCC-CeEEecCCCCce-ehHHHHHHHc
Confidence 3456789999988 44566788 666 9999988763
No 77
>2a20_A Regulating synaptic membrane exocytosis protein 2; zinc-finger domain, metal binding protein; NMR {Rattus norvegicus} PDB: 2cjs_C
Probab=58.36 E-value=0.55 Score=34.72 Aligned_cols=32 Identities=28% Similarity=0.748 Sum_probs=19.3
Q ss_pred CCCCCeeeeccc-CCCCeEEeCCCCcc------cCHHHHHHHh
Q 046132 300 NDPGKECVICLS-EPRDTTVLPCRHMC------MCSGCAKVLR 335 (361)
Q Consensus 300 ~~~~~eCvICl~-~~~d~vlLPCgH~c------fC~~Ca~~l~ 335 (361)
.++...|.||+. ++.|. |||.| ||..|.-.+.
T Consensus 6 ~~d~~~C~iC~KTKFADG----~Gh~C~yCk~r~CaRCGg~v~ 44 (62)
T 2a20_A 6 KGDAPTCGICHKTKFADG----CGHNCSYCQTKFCARCGGRVS 44 (62)
T ss_dssp SSCCCCCSSSSCSCCCSS----CCEEBTTTCCEECTTSEEEEE
T ss_pred cCCcchhhhhccceeccC----CCccccccCCeeecccCCEee
Confidence 345678999995 44443 67763 4555554443
No 78
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=54.49 E-value=5.2 Score=39.49 Aligned_cols=45 Identities=24% Similarity=0.615 Sum_probs=30.6
Q ss_pred CCeeeecccCCCCeE-EeCCCCcccCHHHHHHHhc--c--CCCCccccccc
Q 046132 303 GKECVICLSEPRDTT-VLPCRHMCMCSGCAKVLRF--Q--TNRCPICRQPV 348 (361)
Q Consensus 303 ~~eCvICl~~~~d~v-lLPCgH~cfC~~Ca~~l~~--q--s~~CPICR~~I 348 (361)
...|.+-+.....++ -..|.|+ -|++-..-|.+ + .-.||+|...+
T Consensus 249 SL~CPlS~~ri~~PvRg~~C~Hl-QCFDl~sfL~~~~~~~~W~CPIC~k~~ 298 (371)
T 3i2d_A 249 SLQCPISYTRMKYPSKSINCKHL-QCFDALWFLHSQLQIPTWQCPVCQIDI 298 (371)
T ss_dssp ESBCTTTSSBCSSEEEETTCCSS-CCEEHHHHHHHHHHSCCCBCTTTCCBC
T ss_pred eecCCCccccccccCcCCcCCCc-ceECHHHHHHHhhcCCceeCCCCCccc
Confidence 367888888888776 5679998 45554433322 2 34699998876
No 79
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=52.34 E-value=11 Score=27.62 Aligned_cols=40 Identities=28% Similarity=0.721 Sum_probs=30.0
Q ss_pred CeeeecccCCCCeEEe---CCCCcccCHHHHHHHhccCCCCccc
Q 046132 304 KECVICLSEPRDTTVL---PCRHMCMCSGCAKVLRFQTNRCPIC 344 (361)
Q Consensus 304 ~eCvICl~~~~d~vlL---PCgH~cfC~~Ca~~l~~qs~~CPIC 344 (361)
..|-.|.....+...+ -|++. ||.+|-.-+-..-..||.|
T Consensus 16 ~~C~~C~~~~~~~~~y~C~~C~~~-FC~dCD~fiHe~Lh~CPgC 58 (59)
T 1z60_A 16 RFCYGCQGELKDQHVYVCAVCQNV-FCVDCDVFVHDSLHSCPGC 58 (59)
T ss_dssp CEETTTTEECTTSEEECCTTTTCC-BCHHHHHTTTTTSCSSSTT
T ss_pred CcccccCcccCCCccEECCccCcC-cccchhHHHHhhccCCcCC
Confidence 4699998887665433 47788 9999987665555789998
No 80
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Probab=50.20 E-value=11 Score=41.57 Aligned_cols=52 Identities=15% Similarity=0.156 Sum_probs=45.2
Q ss_pred CCCCCCeeeecccCCCCeEEeCCCCcccCHHHHHHHhccCCCCccccccccc
Q 046132 299 ANDPGKECVICLSEPRDTTVLPCRHMCMCSGCAKVLRFQTNRCPICRQPVER 350 (361)
Q Consensus 299 ~~~~~~eCvICl~~~~d~vlLPCgH~cfC~~Ca~~l~~qs~~CPICR~~I~~ 350 (361)
+..+...|.|-++-.+|+|++|.||..+-..++.+|.....+||+-|+++..
T Consensus 887 ~iP~~F~cPIs~~lM~DPVilpsG~~TydR~~I~~wl~~~~tdP~Tr~~L~~ 938 (968)
T 3m62_A 887 DVPDEFLDPLMYTIMKDPVILPASKMNIDRSTIKAHLLSDSTDPFNRMPLKL 938 (968)
T ss_dssp CSCGGGBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHTTCCBCTTTCCBCCG
T ss_pred CCcHHhCCcchhhHHhCCeEcCCCCEEECHHHHHHHHhcCCCCCCCCCCCCc
Confidence 3455688999999999999999986448999999998888899999998864
No 81
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=47.86 E-value=8.2 Score=37.93 Aligned_cols=46 Identities=22% Similarity=0.480 Sum_probs=31.6
Q ss_pred CCeeeecccCCCCeE-EeCCCCcccCHHHHHHHhc--c--CCCCcccccccc
Q 046132 303 GKECVICLSEPRDTT-VLPCRHMCMCSGCAKVLRF--Q--TNRCPICRQPVE 349 (361)
Q Consensus 303 ~~eCvICl~~~~d~v-lLPCgH~cfC~~Ca~~l~~--q--s~~CPICR~~I~ 349 (361)
...|.|-+...+.++ -..|.|+ -|++-..-|.+ + .-.||+|...+.
T Consensus 215 SL~CPlS~~ri~~P~Rg~~C~Hl-qCFDl~sfL~~~~~~~~W~CPiC~k~~~ 265 (360)
T 4fo9_A 215 SLMCPLGKMRLTIPCRAVTCTHL-QCFDAALYLQMNEKKPTWICPVCDKKAA 265 (360)
T ss_dssp ESBCTTTCSBCSSEEEETTCCCC-CCEEHHHHHHHHHHSCCCBCTTTCSBCC
T ss_pred eeeCCCccceeccCCcCCCCCCC-ccCCHHHHHHHHhhCCCeECCCCCcccC
Confidence 357998888888776 5679998 56655544332 2 246999988764
No 82
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=45.85 E-value=3.6 Score=39.53 Aligned_cols=46 Identities=22% Similarity=0.471 Sum_probs=37.1
Q ss_pred CCCCeeeecccCCCCeEEeC----CC--CcccCHHHHHHHhccCCCCcccccc
Q 046132 301 DPGKECVICLSEPRDTTVLP----CR--HMCMCSGCAKVLRFQTNRCPICRQP 347 (361)
Q Consensus 301 ~~~~eCvICl~~~~d~vlLP----Cg--H~cfC~~Ca~~l~~qs~~CPICR~~ 347 (361)
.....|.||-+.+.-.++.. =| |+ .|.-|...|.+...+||.|-..
T Consensus 180 ~~~~~CPvCGs~P~~s~l~~~g~~~G~R~l-~Cs~C~t~W~~~R~~C~~Cg~~ 231 (309)
T 2fiy_A 180 ESRTLCPACGSPPMAGMIRQGGKETGLRYL-SCSLCACEWHYVRIKCSHCEES 231 (309)
T ss_dssp TTCSSCTTTCCCEEEEEEEC----CCEEEE-EETTTCCEEECCTTSCSSSCCC
T ss_pred ccCCCCCCCCCcCceeEEeecCCCCCcEEE-EeCCCCCEEeecCcCCcCCCCC
Confidence 44678999999888776642 23 45 8999999999988999999886
No 83
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=36.42 E-value=55 Score=26.01 Aligned_cols=49 Identities=29% Similarity=0.599 Sum_probs=34.0
Q ss_pred CCCeeeecccCCCCe----EEeCCCCc--ccCHHHHHHHhcc-CCCCccccccccc
Q 046132 302 PGKECVICLSEPRDT----TVLPCRHM--CMCSGCAKVLRFQ-TNRCPICRQPVER 350 (361)
Q Consensus 302 ~~~eCvICl~~~~d~----vlLPCgH~--cfC~~Ca~~l~~q-s~~CPICR~~I~~ 350 (361)
....|.||-+..-.+ +|+-|..- -+|..|.+--+.. ...||.|.+...+
T Consensus 15 ~~qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErkeG~q~CpqCktrYkr 70 (93)
T 1weo_A 15 DGQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERREGTQNCPQCKTRYKR 70 (93)
T ss_dssp SSCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHHTSCSSCTTTCCCCCC
T ss_pred CCCccccccCccccCCCCCEEEeeeccCChhhHHHHHHHHhccCccccccCCcccc
Confidence 456899998863322 45555432 2799999986654 4679999998864
No 84
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=33.16 E-value=29 Score=29.10 Aligned_cols=47 Identities=17% Similarity=0.350 Sum_probs=29.2
Q ss_pred CCCCCeeeecccCCCCeEEeCCCCcccCHHHHHHHh------c-----cCCCCcccccc
Q 046132 300 NDPGKECVICLSEPRDTTVLPCRHMCMCSGCAKVLR------F-----QTNRCPICRQP 347 (361)
Q Consensus 300 ~~~~~eCvICl~~~~d~vlLPCgH~cfC~~Ca~~l~------~-----qs~~CPICR~~ 347 (361)
+..+..|.||-+--.-..---|-.. ||..|+.... . ..=.|.+|+..
T Consensus 54 Dg~~~~C~vC~dGG~LlcCd~Cpr~-Fc~~Cl~~~lg~~~l~~i~~~~~~W~C~~C~~~ 111 (129)
T 3ql9_A 54 DGMDEQCRWCAEGGNLICCDFCHNA-FCKKCILRNLGRRELSTIMDENNQWYCYICHPE 111 (129)
T ss_dssp TSCBSSCTTTCCCSEEEECSSSSCE-EEHHHHHHHTCHHHHHHHTCTTSCCCCTTTCCG
T ss_pred CCCCCcCeecCCCCeeEecCCCchh-hhHHHhCCCcchhHHHHhccCCCCeEcCCcCCH
Confidence 4455679999865432222245555 9999998531 1 12469999764
No 85
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=31.98 E-value=37 Score=24.96 Aligned_cols=46 Identities=20% Similarity=0.376 Sum_probs=28.2
Q ss_pred CCCCeeeecccCCCCeEEeCCCCcccCHHHHHHHhccC----CCCcccccc
Q 046132 301 DPGKECVICLSEPRDTTVLPCRHMCMCSGCAKVLRFQT----NRCPICRQP 347 (361)
Q Consensus 301 ~~~~eCvICl~~~~d~vlLPCgH~cfC~~Ca~~l~~qs----~~CPICR~~ 347 (361)
..+..|.||.+...-..---|... |+..|+.-..... =.|+.|++.
T Consensus 10 ~~~~~C~vC~~~~~ll~Cd~C~~~-~H~~Cl~P~l~~~P~g~W~C~~C~~~ 59 (66)
T 2lri_C 10 APGARCGVCGDGTDVLRCTHCAAA-FHWRCHFPAGTSRPGTGLRCRSCSGD 59 (66)
T ss_dssp CTTCCCTTTSCCTTCEECSSSCCE-ECHHHHCTTTCCCCSSSCCCTTTTTC
T ss_pred CCCCCcCCCCCCCeEEECCCCCCc-eecccCCCccCcCCCCCEECccccCC
Confidence 345679999865442222336655 9999986422221 369999764
No 86
>2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated H3K4, de novo DNA methylation, transferase regulator; HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B*
Probab=22.97 E-value=58 Score=32.19 Aligned_cols=54 Identities=22% Similarity=0.368 Sum_probs=34.2
Q ss_pred CCCCCCeeeecccCCCCeEEe--CCCCcccCHHHHHHHhcc----------CCCCccccccc-cceEE
Q 046132 299 ANDPGKECVICLSEPRDTTVL--PCRHMCMCSGCAKVLRFQ----------TNRCPICRQPV-ERLLE 353 (361)
Q Consensus 299 ~~~~~~eCvICl~~~~d~vlL--PCgH~cfC~~Ca~~l~~q----------s~~CPICR~~I-~~ll~ 353 (361)
++..+..|.+|-+...-...= .|... ||..|++.+... .=.|=+|...- ..+++
T Consensus 89 ~DG~~~yCr~C~~Gg~l~~Cdn~~C~r~-FC~~Ci~~n~g~~~~~~i~~~d~W~Cf~C~p~p~~~ll~ 155 (386)
T 2pv0_B 89 DDGYQSYCSICCSGETLLICGNPDCTRC-YCFECVDSLVGPGTSGKVHAMSNWVCYLCLPSSRSGLLQ 155 (386)
T ss_dssp SSSSBCSCTTTCCCSSCEECCSTTCCCE-ECHHHHHHHTCTTHHHHHHHCSSCCCTTTSSCCEETTEE
T ss_pred CCCCcccceEcCCCCeEEEeCCCCCCcc-hHHHHHHHhcChhHHHHhhccCCceEEEcCCcchHhhhh
Confidence 344567899998765433333 45555 999999986521 23699997653 34443
No 87
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2
Probab=22.45 E-value=36 Score=25.27 Aligned_cols=45 Identities=18% Similarity=0.437 Sum_probs=25.5
Q ss_pred CCCCeeeecccCCCCeEEeC---CCCcccCHHHHHHH---------hccCCCCcccccc
Q 046132 301 DPGKECVICLSEPRDTTVLP---CRHMCMCSGCAKVL---------RFQTNRCPICRQP 347 (361)
Q Consensus 301 ~~~~eCvICl~~~~d~vlLP---CgH~cfC~~Ca~~l---------~~qs~~CPICR~~ 347 (361)
.+...| ||.....+..++- |... |...|+... ....-.|+.|+..
T Consensus 14 ~~~~~C-~C~~~~~~~~MI~Cd~C~~W-fH~~Cvgl~~~~~~~l~~~~~~~~C~~C~~~ 70 (76)
T 1wem_A 14 PNALYC-ICRQPHNNRFMICCDRCEEW-FHGDCVGISEARGRLLERNGEDYICPNCTIL 70 (76)
T ss_dssp TTCCCS-TTCCCCCSSCEEECSSSCCE-EEHHHHSCCHHHHHHHHHHTCCCCCHHHHHH
T ss_pred CCCCEE-ECCCccCCCCEEEeCCCCCc-EeCeEEccchhhhhhccCCCCeEECcCCcCc
Confidence 344556 8987654433333 5533 788887421 1234579999764
No 88
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=22.32 E-value=67 Score=27.31 Aligned_cols=47 Identities=17% Similarity=0.328 Sum_probs=31.2
Q ss_pred CCCCCeeeecccCCCCeEEeCCCCcccCHHHHHHHhc-----------cCCCCcccccc
Q 046132 300 NDPGKECVICLSEPRDTTVLPCRHMCMCSGCAKVLRF-----------QTNRCPICRQP 347 (361)
Q Consensus 300 ~~~~~eCvICl~~~~d~vlLPCgH~cfC~~Ca~~l~~-----------qs~~CPICR~~ 347 (361)
+..+..|.||.+.-.-...-.|-.. ||..|+..... ..=.|+.|+..
T Consensus 60 Dg~~d~C~vC~~GG~LlcCD~Cpr~-Fh~~Cl~p~l~~~~l~~i~~p~~~W~C~~C~~~ 117 (142)
T 2lbm_A 60 DGMDEQCRWCAEGGNLICCDFCHNA-FCKKCILRNLGRKELSTIMDENNQWYCYICHPE 117 (142)
T ss_dssp TSCBCSCSSSCCCSSEEECSSSCCE-EEHHHHHHHTCHHHHHHHHTSTTCCCCTTTCCC
T ss_pred CCCCCeecccCCCCcEEeCCCCCCe-eeHhhcCCCCChhhhhhcccCCCCCEeecccCc
Confidence 3456789999976654433456666 99999985321 12359999853
No 89
>2csz_A Synaptotagmin-like protein 4; exophilin 2, granuphilin, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=21.61 E-value=8.8 Score=29.60 Aligned_cols=46 Identities=24% Similarity=0.597 Sum_probs=28.5
Q ss_pred CCCCCeeeecccCC-----CCeEEeCCCCcccCHHHHHHHhccCCCCccccc
Q 046132 300 NDPGKECVICLSEP-----RDTTVLPCRHMCMCSGCAKVLRFQTNRCPICRQ 346 (361)
Q Consensus 300 ~~~~~eCvICl~~~-----~d~vlLPCgH~cfC~~Ca~~l~~qs~~CPICR~ 346 (361)
.+..+.|..|.... +..+.--|.|. .|.+|-.......=.|-||-.
T Consensus 22 ~~~~r~CarC~~~LG~l~~~g~~C~~Ck~r-VC~~Crv~~~~~~W~C~VC~k 72 (76)
T 2csz_A 22 HYSDRTCARCQESLGRLSPKTNTCRGCNHL-VCRDCRIQESNGTWRCKVCSG 72 (76)
T ss_dssp TCCCCBCSSSCCBCSSSCTTTSEETTTTEE-CCTTSEEECSTTCEEEHHHHS
T ss_pred CCCccchhhhCccccccccCCCcCcccChh-hcccccccCCCCCEEEeeCch
Confidence 45568899998753 33455568898 888885432211124777744
No 90
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=21.12 E-value=88 Score=24.62 Aligned_cols=34 Identities=21% Similarity=0.578 Sum_probs=24.3
Q ss_pred CCCCCeeeecccCCCCeEEeCCC--CcccCHHHHHHH
Q 046132 300 NDPGKECVICLSEPRDTTVLPCR--HMCMCSGCAKVL 334 (361)
Q Consensus 300 ~~~~~eCvICl~~~~d~vlLPCg--H~cfC~~Ca~~l 334 (361)
...+..|.||-....+ .++||| -.+|...|++++
T Consensus 12 ~~~D~~C~VC~~~t~~-~l~pCRvC~RvfH~~CL~r~ 47 (89)
T 1wil_A 12 VVNDEMCDVCEVWTAE-SLFPCRVCTRVFHDGCLRRM 47 (89)
T ss_dssp CCCSCCCTTTCCCCSS-CCSSCSSSSSCCCHHHHHHH
T ss_pred CCCCcccCcccccccc-ceeccccccccccHhhcccc
Confidence 4466789999865544 456866 334999999996
Done!