BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 046137
(194 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3I52|A Chain A, Ternary Complex Structure Of Leucoanthocyanidin Reductase
From Vitis Vinifera
pdb|3I5M|A Chain A, Structure Of The Apo Form Of Leucoanthocyanidin Reductase
From Vitis Vinifera
pdb|3I6I|A Chain A, Structure Of The Binary Complex Leucoanthocyanidin
Reductase - Nadph From Vitis Vinifera
pdb|3I6Q|A Chain A, Structure Of The Binary Complex Leucoanthocyanidin
Reductase-Nadph From Vitis Vinifera
Length = 346
Score = 252 bits (644), Expect = 9e-68, Method: Compositional matrix adjust.
Identities = 124/194 (63%), Positives = 149/194 (76%), Gaps = 2/194 (1%)
Query: 1 MTVSNGITTGKSRVLVVGATGFIGRFVTEASLASGRPTYVLVRPSPGSSCNKAKIVEAFK 60
MTVS + + K RVL+ GATGFIG+FV ASL + RPTY+L RP P S +KAKI +A +
Sbjct: 1 MTVS-PVPSPKGRVLIAGATGFIGQFVATASLDAHRPTYILARPGPRSP-SKAKIFKALE 58
Query: 61 DKGAFLLRGTVSDRELMEKILKEHEIEIVISAVGGEQVEDQLPLIEAIKAVGTIKRFLPS 120
DKGA ++ G ++++E MEKILKEHEI+IV+S VGGE + DQ+ L++A+KAVGTIKRFLPS
Sbjct: 59 DKGAIIVYGLINEQEAMEKILKEHEIDIVVSTVGGESILDQIALVKAMKAVGTIKRFLPS 118
Query: 121 EFGHDVDRADPVEPGLAMYXXXXXXXXXXXXXXXPYTYICCNSIASWPYYDNHHPSEVLP 180
EFGHDV+RADPVEPGL MY P+TYICCNSIASWPYY+N HPSEVLP
Sbjct: 119 EFGHDVNRADPVEPGLNMYREKRRVRQLVEESGIPFTYICCNSIASWPYYNNIHPSEVLP 178
Query: 181 PLDQFQIYGDGTVK 194
P D FQIYGDG VK
Sbjct: 179 PTDFFQIYGDGNVK 192
>pdb|1QYC|A Chain A, Crystal Structures Of Pinoresinol-Lariciresinol And
Phenylcoumaran Benzylic Ether Reductases, And Their
Relationship To Isoflavone Reductases
pdb|1QYC|B Chain B, Crystal Structures Of Pinoresinol-Lariciresinol And
Phenylcoumaran Benzylic Ether Reductases, And Their
Relationship To Isoflavone Reductases
Length = 308
Score = 144 bits (362), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 75/185 (40%), Positives = 110/185 (59%), Gaps = 3/185 (1%)
Query: 11 KSRVLVVGATGFIGRFVTEASLASGRPTYVLVRPSPGSS-CNKAKIVEAFKDKGAFLLRG 69
+SR+L++GATG+IGR V +ASL G PT++LVR S SS KA+++E+FK GA ++ G
Sbjct: 4 RSRILLIGATGYIGRHVAKASLDLGHPTFLLVRESTASSNSEKAQLLESFKASGANIVHG 63
Query: 70 TVSDRELMEKILKEHEIEIVISAVGGEQVEDQLPLIEAIKAVGTIKRFLPSEFGHDVDRA 129
++ D + + +K +++VIS VG Q+E Q+ +I+AIK VGT+KRF PSEFG+DVD
Sbjct: 64 SIDDHASLVEAVKN--VDVVISTVGSLQIESQVNIIKAIKEVGTVKRFFPSEFGNDVDNV 121
Query: 130 DPVEPGLAMYXXXXXXXXXXXXXXXPYTYICCNSIASWPYYDNHHPSEVLPPLDQFQIYG 189
VEP +++ PYTY+ N A + PP D+ I G
Sbjct: 122 HAVEPAKSVFEVKAKVRRAIEAEGIPYTYVSSNCFAGYFLRSLAQAGLTAPPRDKVVILG 181
Query: 190 DGTVK 194
DG +
Sbjct: 182 DGNAR 186
>pdb|2GAS|A Chain A, Crystal Structure Of Isoflavone Reductase
pdb|2GAS|B Chain B, Crystal Structure Of Isoflavone Reductase
Length = 307
Score = 132 bits (331), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 68/186 (36%), Positives = 107/186 (57%), Gaps = 4/186 (2%)
Query: 11 KSRVLVVGATGFIGRFVTEASLASGRPTYVLVRPSPGSSC--NKAKIVEAFKDKGAFLLR 68
++++L++G TG IGR + AS+ +G PTY LVR + ++ K ++++ ++ G LL
Sbjct: 2 ENKILILGPTGAIGRHIVWASIKAGNPTYALVRKTITAANPETKEELIDNYQSLGVILLE 61
Query: 69 GTVSDRELMEKILKEHEIEIVISAVGGEQVEDQLPLIEAIKAVGTIKRFLPSEFGHDVDR 128
G ++D E + K +K+ ++IVI A G +EDQ+ +I+AIK G +K+F PSEFG DVDR
Sbjct: 62 GDINDHETLVKAIKQ--VDIVICAAGRLLIEDQVKIIKAIKEAGNVKKFFPSEFGLDVDR 119
Query: 129 ADPVEPGLAMYXXXXXXXXXXXXXXXPYTYICCNSIASWPYYDNHHPSEVLPPLDQFQIY 188
D VEP ++ PYTY+CC++ + + PP D+ I
Sbjct: 120 HDAVEPVRQVFEEKASIRRVIEAEGVPYTYLCCHAFTGYFLRNLAQLDATDPPRDKVVIL 179
Query: 189 GDGTVK 194
GDG VK
Sbjct: 180 GDGNVK 185
>pdb|1QYD|A Chain A, Crystal Structures Of Pinoresinol-Lariciresinol And
Phenylcoumaran Benzylic Ether Reductases, And Their
Relationship To Isoflavone Reductases
pdb|1QYD|B Chain B, Crystal Structures Of Pinoresinol-Lariciresinol And
Phenylcoumaran Benzylic Ether Reductases, And Their
Relationship To Isoflavone Reductases
pdb|1QYD|C Chain C, Crystal Structures Of Pinoresinol-Lariciresinol And
Phenylcoumaran Benzylic Ether Reductases, And Their
Relationship To Isoflavone Reductases
pdb|1QYD|D Chain D, Crystal Structures Of Pinoresinol-Lariciresinol And
Phenylcoumaran Benzylic Ether Reductases, And Their
Relationship To Isoflavone Reductases
Length = 313
Score = 130 bits (327), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 77/194 (39%), Positives = 109/194 (56%), Gaps = 16/194 (8%)
Query: 11 KSRVLVVGATGFIGRFVTEASLASGRPTYVLVRPSPGSSCNKAKIVEAFKDKGAFLLRGT 70
KSRVL+VG TG+IG+ + AS++ G PTYVL RP S+ +K +++ FK GA L+ +
Sbjct: 4 KSRVLIVGGTGYIGKRIVNASISLGHPTYVLFRPEVVSNIDKVQMLLYFKQLGAKLIEAS 63
Query: 71 VSDRELMEKILKEHEIEIVISAVGG----EQVEDQLPLIEAIKAVGTIKRFLPSEFGHDV 126
+ D + + LK ++++VISA+ G + +QL L+EAIK G IKRFLPSEFG D
Sbjct: 64 LDDHQRLVDALK--QVDVVISALAGGVLSHHILEQLKLVEAIKEAGNIKRFLPSEFGMDP 121
Query: 127 DRAD-PVEPGLAMYXXXXXXXXXXXXXXXPYTYICCNSIA-----SWPYYDNHHPSEVLP 180
D + ++PG + PYTY+ N A S D H ++P
Sbjct: 122 DIMEHALQPGSITFIDKRKVRRAIEAASIPYTYVSSNMFAGYFAGSLAQLDGH----MMP 177
Query: 181 PLDQFQIYGDGTVK 194
P D+ IYGDG VK
Sbjct: 178 PRDKVLIYGDGNVK 191
>pdb|2QX7|A Chain A, Structure Of Eugenol Synthase From Ocimum Basilicum
pdb|2QX7|B Chain B, Structure Of Eugenol Synthase From Ocimum Basilicum
pdb|2QYS|A Chain A, Structure Of Eugenol Synthase From Ocimum Basilicum
pdb|2QYS|B Chain B, Structure Of Eugenol Synthase From Ocimum Basilicum
pdb|2QZZ|A Chain A, Structure Of Eugenol Synthase From Ocimum Basilicum
pdb|2QZZ|B Chain B, Structure Of Eugenol Synthase From Ocimum Basilicum
pdb|2R6J|A Chain A, Structure Of Eugenol Synthase From Ocimum Basilicum
pdb|2R6J|B Chain B, Structure Of Eugenol Synthase From Ocimum Basilicum
Length = 318
Score = 116 bits (290), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 65/186 (34%), Positives = 105/186 (56%), Gaps = 13/186 (6%)
Query: 11 KSRVLVVGATGFIGRFVTEASLASGRPTYVLVRPSPGSSCNKAKIVEAFKDKGAFLLRGT 70
KS++L+ G TG+IG + + SL G PTYV RP+ +K +++ F+ GA +++G
Sbjct: 11 KSKILIFGGTGYIGNHMVKGSLKLGHPTYVFTRPN----SSKTTLLDEFQSLGAIIVKGE 66
Query: 71 VSDRELMEKILKEHEIEIVISAVGGEQVEDQLPLIEAIKAVGTIKRFLPSEFGHDVDRAD 130
+ + E + +++K+ +++VISA+ Q+ DQ ++EAIK G IKRFLPS+FG + DR +
Sbjct: 67 LDEHEKLVELMKK--VDVVISALAFPQILDQFKILEAIKVAGNIKRFLPSDFGVEEDRIN 124
Query: 131 PVEPGLAMYXXXXXXXXXXXXXXXPYTYICCNSIASWPYYDNH--HPSEVLPPLDQFQIY 188
+ P A+ PYTY+ N AS Y+ N+ P + P D+ +Y
Sbjct: 125 ALPPFEALIERKRMIRRAIEEANIPYTYVSANCFAS--YFINYLLRPYD---PKDEITVY 179
Query: 189 GDGTVK 194
G G K
Sbjct: 180 GTGEAK 185
>pdb|2R2G|A Chain A, Structure Of Eugenol Synthase From Ocimum Basilicum
Complexed With Emdf
pdb|2R2G|B Chain B, Structure Of Eugenol Synthase From Ocimum Basilicum
Complexed With Emdf
Length = 318
Score = 116 bits (290), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 65/186 (34%), Positives = 105/186 (56%), Gaps = 13/186 (6%)
Query: 11 KSRVLVVGATGFIGRFVTEASLASGRPTYVLVRPSPGSSCNKAKIVEAFKDKGAFLLRGT 70
KS++L+ G TG+IG + + SL G PTYV RP+ +K +++ F+ GA +++G
Sbjct: 11 KSKILIFGGTGYIGNHMVKGSLKLGHPTYVFTRPN----SSKTTLLDEFQSLGAIIVKGE 66
Query: 71 VSDRELMEKILKEHEIEIVISAVGGEQVEDQLPLIEAIKAVGTIKRFLPSEFGHDVDRAD 130
+ + E + +++K+ +++VISA+ Q+ DQ ++EAIK G IKRFLPS+FG + DR +
Sbjct: 67 LDEHEKLVELMKK--VDVVISALAFPQILDQFKILEAIKVAGNIKRFLPSDFGVEEDRIN 124
Query: 131 PVEPGLAMYXXXXXXXXXXXXXXXPYTYICCNSIASWPYYDNH--HPSEVLPPLDQFQIY 188
+ P A+ PYTY+ N AS Y+ N+ P + P D+ +Y
Sbjct: 125 ALPPFEALIERQRMIRRAIEEANIPYTYVSANCFAS--YFINYLLRPYD---PKDEITVY 179
Query: 189 GDGTVK 194
G G K
Sbjct: 180 GTGEAK 185
>pdb|2QW8|A Chain A, Structure Of Eugenol Synthase From Ocimum Basilicum
pdb|2QW8|B Chain B, Structure Of Eugenol Synthase From Ocimum Basilicum
Length = 314
Score = 115 bits (289), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 65/186 (34%), Positives = 105/186 (56%), Gaps = 13/186 (6%)
Query: 11 KSRVLVVGATGFIGRFVTEASLASGRPTYVLVRPSPGSSCNKAKIVEAFKDKGAFLLRGT 70
KS++L+ G TG+IG + + SL G PTYV RP+ +K +++ F+ GA +++G
Sbjct: 7 KSKILIFGGTGYIGNHMVKGSLKLGHPTYVFTRPN----SSKTTLLDEFQSLGAIIVKGE 62
Query: 71 VSDRELMEKILKEHEIEIVISAVGGEQVEDQLPLIEAIKAVGTIKRFLPSEFGHDVDRAD 130
+ + E + +++K+ +++VISA+ Q+ DQ ++EAIK G IKRFLPS+FG + DR +
Sbjct: 63 LDEHEKLVELMKK--VDVVISALAFPQILDQFKILEAIKVAGNIKRFLPSDFGVEEDRIN 120
Query: 131 PVEPGLAMYXXXXXXXXXXXXXXXPYTYICCNSIASWPYYDNH--HPSEVLPPLDQFQIY 188
+ P A+ PYTY+ N AS Y+ N+ P + P D+ +Y
Sbjct: 121 ALPPFEALIERKRMIRRAIEEANIPYTYVSANCFAS--YFINYLLRPYD---PKDEITVY 175
Query: 189 GDGTVK 194
G G K
Sbjct: 176 GTGEAK 181
>pdb|3C3X|A Chain A, The Multiple Phenylpropene Synthases In Both Clarkia
Breweri And Petunia Hybrida Represent Two Distinct
Lineages
pdb|3C3X|B Chain B, The Multiple Phenylpropene Synthases In Both Clarkia
Breweri And Petunia Hybrida Represent Two Distinct
Lineages
Length = 318
Score = 114 bits (285), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 65/186 (34%), Positives = 104/186 (55%), Gaps = 13/186 (6%)
Query: 11 KSRVLVVGATGFIGRFVTEASLASGRPTYVLVRPSPGSSCNKAKIVEAFKDKGAFLLRGT 70
KS++L+ G TG+IG + + SL G PTYV RP+ +K +++ F+ GA +++G
Sbjct: 11 KSKILIFGGTGYIGNHMVKGSLKLGHPTYVFTRPN----SSKTTLLDEFQSLGAIIVKGE 66
Query: 71 VSDRELMEKILKEHEIEIVISAVGGEQVEDQLPLIEAIKAVGTIKRFLPSEFGHDVDRAD 130
+ + E + +++K+ +++VISA+ Q DQ ++EAIK G IKRFLPS+FG + DR +
Sbjct: 67 LDEHEKLVELMKK--VDVVISALAVPQYLDQFKILEAIKVAGNIKRFLPSDFGVEEDRIN 124
Query: 131 PVEPGLAMYXXXXXXXXXXXXXXXPYTYICCNSIASWPYYDNH--HPSEVLPPLDQFQIY 188
+ P A+ PYTY+ N AS Y+ N+ P + P D+ +Y
Sbjct: 125 ALPPFEALIERKRMIRRAIEEANIPYTYVSANCFAS--YFINYLLRPYD---PKDEITVY 179
Query: 189 GDGTVK 194
G G K
Sbjct: 180 GTGEAK 185
>pdb|3C1O|A Chain A, The Multiple Phenylpropene Synthases In Both Clarkia
Breweri And Petunia Hybrida Represent Two Distinct
Lineages
Length = 321
Score = 111 bits (278), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 64/185 (34%), Positives = 101/185 (54%), Gaps = 7/185 (3%)
Query: 13 RVLVVGATGFIGRFVTEASLASGRPTYVLVRP-SPGSSCNKAKIVEAFKDKGAFLLRGTV 71
++++ G TG+IG+F+ ASL+ PT++ RP +P S+ + ++ E F+ G ++ G +
Sbjct: 6 KIIIYGGTGYIGKFMVRASLSFSHPTFIYARPLTPDSTPSSVQLREEFRSMGVTIIEGEM 65
Query: 72 SDRELMEKILKEHEIEIVISAVGGEQVEDQLPLIEAIKAVGTIKRFLPSEFGHDVDRADP 131
+ E M +LK+ ++IVISA+ + Q+ +I AIKA G IKRFLPS+FG + DR P
Sbjct: 66 EEHEKMVSVLKQ--VDIVISALPFPMISSQIHIINAIKAAGNIKRFLPSDFGCEEDRIKP 123
Query: 132 VEPGLAMYXXXXXXXXXXXXXXXPYTYICCNSIASWPYYDNH--HPSEVLPPLDQFQIYG 189
+ P ++ PYTY+ N + Y+ N+ HPS D IYG
Sbjct: 124 LPPFESVLEKKRIIRRAIEAAALPYTYVSANCFGA--YFVNYLLHPSPHPNRNDDIVIYG 181
Query: 190 DGTVK 194
G K
Sbjct: 182 TGETK 186
>pdb|1LRJ|A Chain A, Crystal Structure Of E. Coli Udp-Galactose 4-Epimerase
Complexed With Udp-N-Acetylglucosamine
pdb|1NAH|A Chain A, Udp-Galactose 4-Epimerase From Escherichia Coli, Reduced
pdb|1NAI|A Chain A, Udp-Galactose 4-Epimerase From Escherichia Coli, Oxidized
pdb|1UDA|A Chain A, Structure Of Udp-Galactose-4-Epimerase Complexed With
Udp-4-Deoxy-4- Fluoro-Alpha-D-Galactose
pdb|1UDB|A Chain A, Structure Of Udp-Galactose-4-Epimerase Complexed With
Udp-4-Deoxy-4- Fluoro-Alpha-D-Glucose
pdb|1XEL|A Chain A, Udp-Galactose 4-Epimerase From Escherichia Coli
Length = 338
Score = 43.5 bits (101), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 35/125 (28%), Positives = 54/125 (43%), Gaps = 25/125 (20%)
Query: 13 RVLVVGATGFIGRFVTEASLASGRPTYVLVRPSPGSSCNKAK----IVEAFKDKGAFLLR 68
RVLV G +G+IG L +G +L + CN + ++E K +
Sbjct: 2 RVLVTGGSGYIGSHTCVQLLQNGHDVIIL-----DNLCNSKRSVLPVIERLGGKHPTFVE 56
Query: 69 GTVSDRELMEKILKEHEIEIVISAVG----GEQVED-----------QLPLIEAIKAVGT 113
G + + LM +IL +H I+ VI G GE V+ L LI A++A
Sbjct: 57 GDIRNEALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAA-N 115
Query: 114 IKRFL 118
+K F+
Sbjct: 116 VKNFI 120
>pdb|1KVS|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
Length = 338
Score = 43.5 bits (101), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 35/125 (28%), Positives = 54/125 (43%), Gaps = 25/125 (20%)
Query: 13 RVLVVGATGFIGRFVTEASLASGRPTYVLVRPSPGSSCNKAK----IVEAFKDKGAFLLR 68
RVLV G +G+IG L +G +L + CN + ++E K +
Sbjct: 2 RVLVTGGSGYIGSHTCVQLLQNGHDVIIL-----DNLCNSKRSVLPVIERLGGKHPTFVE 56
Query: 69 GTVSDRELMEKILKEHEIEIVISAVG----GEQVED-----------QLPLIEAIKAVGT 113
G + + LM +IL +H I+ VI G GE V+ L LI A++A
Sbjct: 57 GDIRNEALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRA-AN 115
Query: 114 IKRFL 118
+K F+
Sbjct: 116 VKNFI 120
>pdb|1LRK|A Chain A, Crystal Structure Of Escherichia Coli Udp-Galactose
4-Epimerase Mutant Y299c Complexed With
Udp-N-Acetylglucosamine
pdb|1LRL|A Chain A, Crystal Structure Of Udp-Galactose 4-Epimerase Mutant
Y299c Complexed With Udp-Glucose
Length = 338
Score = 43.5 bits (101), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 35/125 (28%), Positives = 54/125 (43%), Gaps = 25/125 (20%)
Query: 13 RVLVVGATGFIGRFVTEASLASGRPTYVLVRPSPGSSCNKAK----IVEAFKDKGAFLLR 68
RVLV G +G+IG L +G +L + CN + ++E K +
Sbjct: 2 RVLVTGGSGYIGSHTCVQLLQNGHDVIIL-----DNLCNSKRSVLPVIERLGGKHPTFVE 56
Query: 69 GTVSDRELMEKILKEHEIEIVISAVG----GEQVED-----------QLPLIEAIKAVGT 113
G + + LM +IL +H I+ VI G GE V+ L LI A++A
Sbjct: 57 GDIRNEALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAA-N 115
Query: 114 IKRFL 118
+K F+
Sbjct: 116 VKNFI 120
>pdb|1KVT|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
Length = 338
Score = 43.1 bits (100), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 35/125 (28%), Positives = 54/125 (43%), Gaps = 25/125 (20%)
Query: 13 RVLVVGATGFIGRFVTEASLASGRPTYVLVRPSPGSSCNKAK----IVEAFKDKGAFLLR 68
RVLV G +G+IG L +G +L + CN + ++E K +
Sbjct: 2 RVLVTGGSGYIGSHTCVQLLQNGHDVIIL-----DNLCNSKRSVLPVIERLGGKHPTFVE 56
Query: 69 GTVSDRELMEKILKEHEIEIVISAVG----GEQVED-----------QLPLIEAIKAVGT 113
G + + LM +IL +H I+ VI G GE V+ L LI A++A
Sbjct: 57 GDIRNEALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRA-AN 115
Query: 114 IKRFL 118
+K F+
Sbjct: 116 VKNFI 120
>pdb|1KVQ|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
Length = 338
Score = 43.1 bits (100), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 35/125 (28%), Positives = 54/125 (43%), Gaps = 25/125 (20%)
Query: 13 RVLVVGATGFIGRFVTEASLASGRPTYVLVRPSPGSSCNKAK----IVEAFKDKGAFLLR 68
RVLV G +G+IG L +G +L + CN + ++E K +
Sbjct: 2 RVLVTGGSGYIGSHTCVQLLQNGHDVIIL-----DNLCNSKRSVLPVIERLGGKHPTFVE 56
Query: 69 GTVSDRELMEKILKEHEIEIVISAVG----GEQVED-----------QLPLIEAIKAVGT 113
G + + LM +IL +H I+ VI G GE V+ L LI A++A
Sbjct: 57 GDIRNEALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAA-N 115
Query: 114 IKRFL 118
+K F+
Sbjct: 116 VKNFI 120
>pdb|2UDP|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
pdb|2UDP|B Chain B, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
pdb|1UDC|A Chain A, Structure Of Udp-Galactose-4-Epimerase Complexed With
Udp-Mannose
Length = 338
Score = 43.1 bits (100), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 35/125 (28%), Positives = 54/125 (43%), Gaps = 25/125 (20%)
Query: 13 RVLVVGATGFIGRFVTEASLASGRPTYVLVRPSPGSSCNKAK----IVEAFKDKGAFLLR 68
RVLV G +G+IG L +G +L + CN + ++E K +
Sbjct: 2 RVLVTGGSGYIGSHTCVQLLQNGHDVIIL-----DNLCNSKRSVLPVIERLGGKHPTFVE 56
Query: 69 GTVSDRELMEKILKEHEIEIVISAVG----GEQVED-----------QLPLIEAIKAVGT 113
G + + LM +IL +H I+ VI G GE V+ L LI A++A
Sbjct: 57 GDIRNEALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRA-AN 115
Query: 114 IKRFL 118
+K F+
Sbjct: 116 VKNFI 120
>pdb|1A9Z|A Chain A, Udp-Galactose 4-Epimerase Mutant S124aY149F COMPLEXED WITH
UDP- Galactose
Length = 338
Score = 43.1 bits (100), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 35/125 (28%), Positives = 54/125 (43%), Gaps = 25/125 (20%)
Query: 13 RVLVVGATGFIGRFVTEASLASGRPTYVLVRPSPGSSCNKAK----IVEAFKDKGAFLLR 68
RVLV G +G+IG L +G +L + CN + ++E K +
Sbjct: 2 RVLVTGGSGYIGSHTCVQLLQNGHDVIIL-----DNLCNSKRSVLPVIERLGGKHPTFVE 56
Query: 69 GTVSDRELMEKILKEHEIEIVISAVG----GEQVED-----------QLPLIEAIKAVGT 113
G + + LM +IL +H I+ VI G GE V+ L LI A++A
Sbjct: 57 GDIRNEALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAA-N 115
Query: 114 IKRFL 118
+K F+
Sbjct: 116 VKNFI 120
>pdb|1KVU|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
Length = 338
Score = 43.1 bits (100), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 35/125 (28%), Positives = 54/125 (43%), Gaps = 25/125 (20%)
Query: 13 RVLVVGATGFIGRFVTEASLASGRPTYVLVRPSPGSSCNKAK----IVEAFKDKGAFLLR 68
RVLV G +G+IG L +G +L + CN + ++E K +
Sbjct: 2 RVLVTGGSGYIGSHTCVQLLQNGHDVIIL-----DNLCNSKRSVLPVIERLGGKHPTFVE 56
Query: 69 GTVSDRELMEKILKEHEIEIVISAVG----GEQVED-----------QLPLIEAIKAVGT 113
G + + LM +IL +H I+ VI G GE V+ L LI A++A
Sbjct: 57 GDIRNEALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRA-AN 115
Query: 114 IKRFL 118
+K F+
Sbjct: 116 VKNFI 120
>pdb|1KVR|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
Length = 338
Score = 43.1 bits (100), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 35/125 (28%), Positives = 54/125 (43%), Gaps = 25/125 (20%)
Query: 13 RVLVVGATGFIGRFVTEASLASGRPTYVLVRPSPGSSCNKAK----IVEAFKDKGAFLLR 68
RVLV G +G+IG L +G +L + CN + ++E K +
Sbjct: 2 RVLVTGGSGYIGSHTCVQLLQNGHDVIIL-----DNLCNSKRSVLPVIERLGGKHPTFVE 56
Query: 69 GTVSDRELMEKILKEHEIEIVISAVG----GEQVED-----------QLPLIEAIKAVGT 113
G + + LM +IL +H I+ VI G GE V+ L LI A++A
Sbjct: 57 GDIRNEALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRA-AN 115
Query: 114 IKRFL 118
+K F+
Sbjct: 116 VKNFI 120
>pdb|1A9Y|A Chain A, Udp-Galactose 4-Epimerase Mutant S124aY149F COMPLEXED WITH
UDP- Glucose
Length = 338
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 35/125 (28%), Positives = 54/125 (43%), Gaps = 25/125 (20%)
Query: 13 RVLVVGATGFIGRFVTEASLASGRPTYVLVRPSPGSSCNKAK----IVEAFKDKGAFLLR 68
RVLV G +G+IG L +G +L + CN + ++E K +
Sbjct: 2 RVLVTGGSGYIGSHTCVQLLQNGHDVIIL-----DNLCNSKRSVLPVIERLGGKHPTFVE 56
Query: 69 GTVSDRELMEKILKEHEIEIVISAVG----GEQVED-----------QLPLIEAIKAVGT 113
G + + LM +IL +H I+ VI G GE V+ L LI A++A
Sbjct: 57 GDIRNEALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRA-AN 115
Query: 114 IKRFL 118
+K F+
Sbjct: 116 VKNFI 120
>pdb|4EGB|A Chain A, 3.0 Angstrom Resolution Crystal Structure Of Dtdp-Glucose
4,6- Dehydratase (Rfbb) From Bacillus Anthracis Str.
Ames In Complex With Nad
pdb|4EGB|B Chain B, 3.0 Angstrom Resolution Crystal Structure Of Dtdp-Glucose
4,6- Dehydratase (Rfbb) From Bacillus Anthracis Str.
Ames In Complex With Nad
pdb|4EGB|C Chain C, 3.0 Angstrom Resolution Crystal Structure Of Dtdp-Glucose
4,6- Dehydratase (Rfbb) From Bacillus Anthracis Str.
Ames In Complex With Nad
pdb|4EGB|D Chain D, 3.0 Angstrom Resolution Crystal Structure Of Dtdp-Glucose
4,6- Dehydratase (Rfbb) From Bacillus Anthracis Str.
Ames In Complex With Nad
pdb|4EGB|E Chain E, 3.0 Angstrom Resolution Crystal Structure Of Dtdp-Glucose
4,6- Dehydratase (Rfbb) From Bacillus Anthracis Str.
Ames In Complex With Nad
pdb|4EGB|F Chain F, 3.0 Angstrom Resolution Crystal Structure Of Dtdp-Glucose
4,6- Dehydratase (Rfbb) From Bacillus Anthracis Str.
Ames In Complex With Nad
pdb|4EGB|G Chain G, 3.0 Angstrom Resolution Crystal Structure Of Dtdp-Glucose
4,6- Dehydratase (Rfbb) From Bacillus Anthracis Str.
Ames In Complex With Nad
pdb|4EGB|H Chain H, 3.0 Angstrom Resolution Crystal Structure Of Dtdp-Glucose
4,6- Dehydratase (Rfbb) From Bacillus Anthracis Str.
Ames In Complex With Nad
Length = 346
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/107 (22%), Positives = 51/107 (47%), Gaps = 7/107 (6%)
Query: 13 RVLVVGATGFIGRFVTEASLASGRPTYVLVRPSPGSSCNKAKIVEAFKDK-GAFLLRGTV 71
+LV G GFIG L S TY ++ + V++ +D + ++G +
Sbjct: 26 NILVTGGAGFIGSNFVHYXLQS-YETYKIINFDALTYSGNLNNVKSIQDHPNYYFVKGEI 84
Query: 72 SDRELMEKILKEHEIEIVISAVGGEQV----EDQLPLIEAIKAVGTI 114
+ EL+E ++KE +++++++ V E+ +P + +GT+
Sbjct: 85 QNGELLEHVIKERDVQVIVNFAAESHVDRSIENPIPFYDT-NVIGTV 130
>pdb|2P5U|A Chain A, Crystal Structure Of Thermus Thermophilus Hb8
Udp-Glucose 4- Epimerase Complex With Nad
pdb|2P5U|B Chain B, Crystal Structure Of Thermus Thermophilus Hb8
Udp-Glucose 4- Epimerase Complex With Nad
pdb|2P5U|C Chain C, Crystal Structure Of Thermus Thermophilus Hb8
Udp-Glucose 4- Epimerase Complex With Nad
pdb|2P5U|D Chain D, Crystal Structure Of Thermus Thermophilus Hb8
Udp-Glucose 4- Epimerase Complex With Nad
pdb|2P5Y|A Chain A, Crystal Structure Of Thermus Thermophilus Hb8
Udp-glucose 4- Epimerase Complex With Nad
Length = 311
Score = 33.1 bits (74), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 32/71 (45%), Gaps = 8/71 (11%)
Query: 13 RVLVVGATGFIGRFVTEASLASGRPTYVLVRPSPGSSCNKAKIVEAFKDKGAFLLRGTVS 72
RVLV G GFIG + E LA G VL + G N K V F R +
Sbjct: 2 RVLVTGGAGFIGSHIVEDLLARGLEVAVLDNLATGKRENVPKGVPFF--------RVDLR 53
Query: 73 DRELMEKILKE 83
D+E +E+ +E
Sbjct: 54 DKEGVERAFRE 64
>pdb|1Z45|A Chain A, Crystal Structure Of The Gal10 Fusion Protein Galactose
MutarotaseUDP-Galactose 4-Epimerase From Saccharomyces
Cerevisiae Complexed With Nad, Udp-Glucose, And
Galactose
Length = 699
Score = 31.2 bits (69), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 42/93 (45%), Gaps = 3/93 (3%)
Query: 14 VLVVGATGFIGRFVTEASLASGRPTYVLVRPSPGSSCNKAKIVEAFKDKGAFLLRGTVSD 73
VLV G G+IG + +G V S S+ + +E + D
Sbjct: 14 VLVTGGAGYIGSHTVVELIENGYDCVVADNLS-NSTYDSVARLEVLTKHHIPFYEVDLCD 72
Query: 74 RELMEKILKEHEIEIVISAVGGEQVED--QLPL 104
R+ +EK+ KE++I+ VI G + V + Q+PL
Sbjct: 73 RKGLEKVFKEYKIDSVIHFAGLKAVGESTQIPL 105
>pdb|2P4H|X Chain X, Crystal Structure Of Vestitone Reductase From Alfalfa
(Medicago Sativa L.)
Length = 322
Score = 31.2 bits (69), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 20/36 (55%)
Query: 11 KSRVLVVGATGFIGRFVTEASLASGRPTYVLVRPSP 46
K RV V G TGF+G ++ ++ L +G +R P
Sbjct: 1 KGRVCVTGGTGFLGSWIIKSLLENGYSVNTTIRADP 36
>pdb|3KRT|A Chain A, Crystal Structure Of Putative Crotonyl Coa Reductase From
Streptomyces Coelicolor A3(2)
pdb|3KRT|B Chain B, Crystal Structure Of Putative Crotonyl Coa Reductase From
Streptomyces Coelicolor A3(2)
pdb|3KRT|C Chain C, Crystal Structure Of Putative Crotonyl Coa Reductase From
Streptomyces Coelicolor A3(2)
pdb|3KRT|D Chain D, Crystal Structure Of Putative Crotonyl Coa Reductase From
Streptomyces Coelicolor A3(2)
Length = 456
Score = 30.8 bits (68), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 32/60 (53%), Gaps = 3/60 (5%)
Query: 6 GITTGKSRVLVVGATGFIGRFVTEASLASG-RPTYVLVRPSPGSSCNKAKIVEAFKDKGA 64
G+ G + VL+ GA+G +G + T+ +LA G P V+ P C +A EA D+ A
Sbjct: 225 GMKQGDN-VLIWGASGGLGSYATQFALAGGANPICVVSSPQKAEIC-RAMGAEAIIDRNA 282
>pdb|3VPS|A Chain A, Structure Of A Novel Nad Dependent-Ndp-Hexosamine
5,6-Dehydratase, Tuna, Involved In Tunicamycin
Biosynthesis
pdb|3VPS|B Chain B, Structure Of A Novel Nad Dependent-Ndp-Hexosamine
5,6-Dehydratase, Tuna, Involved In Tunicamycin
Biosynthesis
Length = 321
Score = 30.4 bits (67), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 19/34 (55%)
Query: 8 TTGKSRVLVVGATGFIGRFVTEASLASGRPTYVL 41
T K R+L+ G GFIG + A +ASG VL
Sbjct: 4 NTLKHRILITGGAGFIGGHLARALVASGEEVTVL 37
>pdb|3HZZ|A Chain A, 2.4 Angstrom Crystal Structure Of Streptomyces Collinus
Crotonyl Coa CarboxylaseREDUCTASE
pdb|3HZZ|B Chain B, 2.4 Angstrom Crystal Structure Of Streptomyces Collinus
Crotonyl Coa CarboxylaseREDUCTASE
pdb|3HZZ|C Chain C, 2.4 Angstrom Crystal Structure Of Streptomyces Collinus
Crotonyl Coa CarboxylaseREDUCTASE
pdb|3HZZ|D Chain D, 2.4 Angstrom Crystal Structure Of Streptomyces Collinus
Crotonyl Coa CarboxylaseREDUCTASE
Length = 467
Score = 29.3 bits (64), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
Query: 14 VLVVGATGFIGRFVTEASLASG-RPTYVLVRPSPGSSCNKAKIVEAFKDKGA 64
VL+ GA+G +G + T+ +LA G P V+ P C ++ EA D+ A
Sbjct: 250 VLIWGASGGLGSYATQFALAGGANPICVVSSPQKAEIC-RSMGAEAIIDRNA 300
>pdb|1NDL|A Chain A, The Awd Nucleotide Diphosphate Kinase From Drosophila
pdb|1NDL|B Chain B, The Awd Nucleotide Diphosphate Kinase From Drosophila
pdb|1NDL|C Chain C, The Awd Nucleotide Diphosphate Kinase From Drosophila
Length = 153
Score = 29.3 bits (64), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 28/49 (57%), Gaps = 2/49 (4%)
Query: 33 ASGRPTYVLVRPSPGSSCNKAKIVEAFKDKGAFL--LRGTVSDRELMEK 79
A+ T+++V+P KI+E F+ KG L L+ T + +EL+EK
Sbjct: 3 ANKERTFIMVKPDGVQRGLVGKIIERFEQKGFKLVALKFTWASKELLEK 51
>pdb|1NSQ|A Chain A, Mechanism Of Phosphate Transfer By Nucleoside
Diphosphate Kinase: X- Ray Structures Of A
Phospho-Histidine Intermediate Of The Enzymes From
Drosophila And Dictyostelium
pdb|1NSQ|B Chain B, Mechanism Of Phosphate Transfer By Nucleoside
Diphosphate Kinase: X- Ray Structures Of A
Phospho-Histidine Intermediate Of The Enzymes From
Drosophila And Dictyostelium
pdb|1NSQ|C Chain C, Mechanism Of Phosphate Transfer By Nucleoside
Diphosphate Kinase: X- Ray Structures Of A
Phospho-Histidine Intermediate Of The Enzymes From
Drosophila And Dictyostelium
Length = 153
Score = 29.3 bits (64), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 28/49 (57%), Gaps = 2/49 (4%)
Query: 33 ASGRPTYVLVRPSPGSSCNKAKIVEAFKDKGAFL--LRGTVSDRELMEK 79
A+ T+++V+P KI+E F+ KG L L+ T + +EL+EK
Sbjct: 3 ANKERTFIMVKPDGVQRGLVGKIIERFEQKGFKLVALKFTWASKELLEK 51
>pdb|3R5S|A Chain A, Crystal Structure Of Apo-Viup
Length = 305
Score = 28.9 bits (63), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 20/32 (62%)
Query: 77 MEKILKEHEIEIVISAVGGEQVEDQLPLIEAI 108
+E + E IV+S +G + DQ+PL++AI
Sbjct: 79 LESVYVEQPDLIVVSXIGADSARDQIPLLQAI 110
>pdb|3R5T|A Chain A, Crystal Structure Of Holo-Viup
Length = 305
Score = 28.9 bits (63), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 20/32 (62%)
Query: 77 MEKILKEHEIEIVISAVGGEQVEDQLPLIEAI 108
+E + E IV+S +G + DQ+PL++AI
Sbjct: 79 LESVYVEQPDLIVVSMIGADSARDQIPLLQAI 110
>pdb|3M2P|A Chain A, The Crystal Structure Of Udp-N-Acetylglucosamine
4-Epimerase From Bacillus Cereus
pdb|3M2P|B Chain B, The Crystal Structure Of Udp-N-Acetylglucosamine
4-Epimerase From Bacillus Cereus
pdb|3M2P|C Chain C, The Crystal Structure Of Udp-N-Acetylglucosamine
4-Epimerase From Bacillus Cereus
pdb|3M2P|D Chain D, The Crystal Structure Of Udp-N-Acetylglucosamine
4-Epimerase From Bacillus Cereus
pdb|3M2P|E Chain E, The Crystal Structure Of Udp-N-Acetylglucosamine
4-Epimerase From Bacillus Cereus
pdb|3M2P|F Chain F, The Crystal Structure Of Udp-N-Acetylglucosamine
4-Epimerase From Bacillus Cereus
Length = 311
Score = 28.9 bits (63), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 12/39 (30%), Positives = 20/39 (51%)
Query: 13 RVLVVGATGFIGRFVTEASLASGRPTYVLVRPSPGSSCN 51
++ V G TGF+G++V E+ G +L R + N
Sbjct: 4 KIAVTGGTGFLGQYVVESIKNDGNTPIILTRSIGNKAIN 42
>pdb|3U9L|A Chain A, The Crystal Structure Of
3-Oxoacyl-[acyl-Carrier-Protein] Reductase (Nadph) From
Sinorhizobium Meliloti
Length = 324
Score = 28.5 bits (62), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 23/92 (25%), Positives = 38/92 (41%), Gaps = 8/92 (8%)
Query: 11 KSRVLVVGATGFIGRFVTEASLASGRPTYVLVRPSPGSSCNKAKIVEAFKDKGAFLLR-- 68
K +L+ GA+ GR EA +G Y R G + + + + F LR
Sbjct: 5 KKIILITGASSGFGRLTAEALAGAGHRVYASXRDIVGRNASNVEAIAGFARDNDVDLRTL 64
Query: 69 -----GTVS-DRELMEKILKEHEIEIVISAVG 94
VS DR + + I ++ I+++I G
Sbjct: 65 ELDVQSQVSVDRAIDQIIGEDGRIDVLIHNAG 96
>pdb|4B4O|A Chain A, Crystal Structure Of Human Epimerase Family Protein
Sdr39u1 (Isoform2) With Nadph
pdb|4B4O|B Chain B, Crystal Structure Of Human Epimerase Family Protein
Sdr39u1 (Isoform2) With Nadph
pdb|4B4O|C Chain C, Crystal Structure Of Human Epimerase Family Protein
Sdr39u1 (Isoform2) With Nadph
pdb|4B4O|D Chain D, Crystal Structure Of Human Epimerase Family Protein
Sdr39u1 (Isoform2) With Nadph
pdb|4B4O|E Chain E, Crystal Structure Of Human Epimerase Family Protein
Sdr39u1 (Isoform2) With Nadph
pdb|4B4O|F Chain F, Crystal Structure Of Human Epimerase Family Protein
Sdr39u1 (Isoform2) With Nadph
pdb|4B4O|G Chain G, Crystal Structure Of Human Epimerase Family Protein
Sdr39u1 (Isoform2) With Nadph
pdb|4B4O|H Chain H, Crystal Structure Of Human Epimerase Family Protein
Sdr39u1 (Isoform2) With Nadph
Length = 298
Score = 28.5 bits (62), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 18/36 (50%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Query: 13 RVLVVGATGFIGRFVTEASLASGRP-TYVLVRPSPG 47
RVLV G TGFIG +T+ A G T V +P PG
Sbjct: 2 RVLVGGGTGFIGTALTQLLNARGHEVTLVSRKPGPG 37
>pdb|1Z7B|A Chain A, Crystal Structure Of E.Coli Arna Dehydrogenase
(Decarboxylase) Domain, R619e Mutant
Length = 358
Score = 28.1 bits (61), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 11/22 (50%), Positives = 16/22 (72%)
Query: 11 KSRVLVVGATGFIGRFVTEASL 32
++RVL++G GFIG +TE L
Sbjct: 13 RTRVLILGVNGFIGNHLTERLL 34
>pdb|1U9J|A Chain A, Crystal Structure Of E. Coli Arna (Pmri) Decarboxylase
Domain
Length = 358
Score = 28.1 bits (61), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 11/22 (50%), Positives = 16/22 (72%)
Query: 11 KSRVLVVGATGFIGRFVTEASL 32
++RVL++G GFIG +TE L
Sbjct: 13 RTRVLILGVNGFIGNHLTERLL 34
>pdb|1Z74|A Chain A, Crystal Structure Of E.Coli Arna Dehydrogenase
(Decarboxylase) Domain, R619y Mutant
Length = 358
Score = 28.1 bits (61), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 11/22 (50%), Positives = 16/22 (72%)
Query: 11 KSRVLVVGATGFIGRFVTEASL 32
++RVL++G GFIG +TE L
Sbjct: 13 RTRVLILGVNGFIGNHLTERLL 34
>pdb|1Z75|A Chain A, Crystal Structure Of Arna Dehydrogenase (decarboxylase)
Domain, R619m Mutant
Length = 358
Score = 28.1 bits (61), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 11/22 (50%), Positives = 16/22 (72%)
Query: 11 KSRVLVVGATGFIGRFVTEASL 32
++RVL++G GFIG +TE L
Sbjct: 13 RTRVLILGVNGFIGNHLTERLL 34
>pdb|1Z73|A Chain A, Crystal Structure Of E. Coli Arna Dehydrogenase
(decarboxylase) Domain, S433a Mutant
Length = 358
Score = 28.1 bits (61), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 11/22 (50%), Positives = 16/22 (72%)
Query: 11 KSRVLVVGATGFIGRFVTEASL 32
++RVL++G GFIG +TE L
Sbjct: 13 RTRVLILGVNGFIGNHLTERLL 34
>pdb|1Z7E|A Chain A, Crystal Structure Of Full Length Arna
pdb|1Z7E|B Chain B, Crystal Structure Of Full Length Arna
pdb|1Z7E|C Chain C, Crystal Structure Of Full Length Arna
pdb|1Z7E|D Chain D, Crystal Structure Of Full Length Arna
pdb|1Z7E|E Chain E, Crystal Structure Of Full Length Arna
pdb|1Z7E|F Chain F, Crystal Structure Of Full Length Arna
Length = 660
Score = 28.1 bits (61), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 11/22 (50%), Positives = 16/22 (72%)
Query: 11 KSRVLVVGATGFIGRFVTEASL 32
++RVL++G GFIG +TE L
Sbjct: 315 RTRVLILGVNGFIGNHLTERLL 336
>pdb|1Y1P|A Chain A, X-Ray Structure Of Aldehyde Reductase With Nadph
pdb|1Y1P|B Chain B, X-Ray Structure Of Aldehyde Reductase With Nadph
pdb|1ZZE|A Chain A, X-Ray Structure Of Nadph-Dependent Carbonyl Reductase From
Sporobolomyces Salmonicolor
pdb|1ZZE|B Chain B, X-Ray Structure Of Nadph-Dependent Carbonyl Reductase From
Sporobolomyces Salmonicolor
Length = 342
Score = 27.7 bits (60), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 33/132 (25%), Positives = 52/132 (39%), Gaps = 22/132 (16%)
Query: 3 VSNGITTGKSRVLVVGATGFIGRFVTEASLASGRPTYVLVRPSPGSSCNKAK-------- 54
+ N + S VLV GA GF+ V E L G R S N K
Sbjct: 3 IDNAVLPEGSLVLVTGANGFVASHVVEQLLEHGYKVRGTAR-SASKLANLQKRWDAKYPG 61
Query: 55 -----IVEAFKDKGAF--LLRGTVSDRELMEKILKEHEI-EIVISAVGGEQVEDQLPLIE 106
+VE +GA+ +++G + + ++ E+V A+GG L +
Sbjct: 62 RFETAVVEDMLKQGAYDEVIKGAAGVAHIASVVSFSNKYDEVVTPAIGG-----TLNALR 116
Query: 107 AIKAVGTIKRFL 118
A A ++KRF+
Sbjct: 117 AAAATPSVKRFV 128
>pdb|4F3Y|A Chain A, X-Ray Crystal Structure Of Dihydrodipicolinate Reductase
From Burkholderia Thailandensis
pdb|4F3Y|B Chain B, X-Ray Crystal Structure Of Dihydrodipicolinate Reductase
From Burkholderia Thailandensis
Length = 272
Score = 26.9 bits (58), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 38/74 (51%), Gaps = 8/74 (10%)
Query: 13 RVLVVGATGFIGRFVTEASLASGRPTYVLVRPSPGSSCNKAKIVEAFKDKGAFLLRGT-V 71
++ + GA+G +GR + EA LA+ T V GS + +D GAFL + T V
Sbjct: 9 KIAIAGASGRMGRMLIEAVLAAPDATLVGALDRTGSP-------QLGQDAGAFLGKQTGV 61
Query: 72 SDRELMEKILKEHE 85
+ + +E++ E +
Sbjct: 62 ALTDDIERVCAEAD 75
>pdb|1UJM|A Chain A, Crystal Structure Of Aldehyde Reductase 2 From
Sporobolomyces Salmonicolor Aku4429
pdb|1UJM|B Chain B, Crystal Structure Of Aldehyde Reductase 2 From
Sporobolomyces Salmonicolor Aku4429
Length = 342
Score = 26.9 bits (58), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 33/132 (25%), Positives = 52/132 (39%), Gaps = 22/132 (16%)
Query: 3 VSNGITTGKSRVLVVGATGFIGRFVTEASLASGRPTYVLVRPSPGSSCNKAK-------- 54
+ N + S VLV GA GF+ V E L G R S N K
Sbjct: 3 IDNAVLPEGSLVLVTGANGFVASHVVEQLLEHGYKVRGTAR-SASKLANLQKRWDAKYPG 61
Query: 55 -----IVEAFKDKGAF--LLRGTVSDRELMEKILKEHEI-EIVISAVGGEQVEDQLPLIE 106
+VE +GA+ +++G + + ++ E+V A+GG L +
Sbjct: 62 RFETAVVEDXLKQGAYDEVIKGAAGVAHIASVVSFSNKYDEVVTPAIGG-----TLNALR 116
Query: 107 AIKAVGTIKRFL 118
A A ++KRF+
Sbjct: 117 AAAATPSVKRFV 128
>pdb|3K0E|A Chain A, Crystal Structure Of The Phosphorylation-Site Mutant T426n
Of The Kaic Circadian Clock Protein
pdb|3K0E|B Chain B, Crystal Structure Of The Phosphorylation-Site Mutant T426n
Of The Kaic Circadian Clock Protein
pdb|3K0E|C Chain C, Crystal Structure Of The Phosphorylation-Site Mutant T426n
Of The Kaic Circadian Clock Protein
pdb|3K0E|D Chain D, Crystal Structure Of The Phosphorylation-Site Mutant T426n
Of The Kaic Circadian Clock Protein
pdb|3K0E|E Chain E, Crystal Structure Of The Phosphorylation-Site Mutant T426n
Of The Kaic Circadian Clock Protein
pdb|3K0E|F Chain F, Crystal Structure Of The Phosphorylation-Site Mutant T426n
Of The Kaic Circadian Clock Protein
Length = 519
Score = 26.9 bits (58), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 30/121 (24%), Positives = 59/121 (48%), Gaps = 7/121 (5%)
Query: 7 ITTGKSRVLVVGATGFIGRFVTEASLASGRPTYVLVRPSPGSSC-NKAK-IVEAFKDKGA 64
+++G R+ + GF + A+ A+G +LV ++C NK + I+ A+++ A
Sbjct: 263 VSSGVVRLDEMCGGGFFKDSIILATGATGTGKTLLVSRFVENACANKERAILFAYEESRA 322
Query: 65 FLLRGTVSDRELMEKILKEHEIEIVISAVGGEQVEDQLPLIEAIKAVGTIKRFLPSEFGH 124
LLR S E++ +++ ++IV + +ED L +I++ I F P+
Sbjct: 323 QLLRNAYSWGMDFEEMERQNLLKIVCAYPESAGLEDHLQIIKS-----EINDFKPARIAI 377
Query: 125 D 125
D
Sbjct: 378 D 378
>pdb|3GEE|A Chain A, Crystal Structure Of Mnme From Chlorobium Tepidum In
Complex With Gdp And Folinic Acid
pdb|3GEI|A Chain A, Crystal Structure Of Mnme From Chlorobium Tepidum In
Complex With Gcp
pdb|3GEI|B Chain B, Crystal Structure Of Mnme From Chlorobium Tepidum In
Complex With Gcp
pdb|3GEI|C Chain C, Crystal Structure Of Mnme From Chlorobium Tepidum In
Complex With Gcp
Length = 476
Score = 26.6 bits (57), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 34/134 (25%), Positives = 59/134 (44%), Gaps = 32/134 (23%)
Query: 24 GRFVTE--ASLASGRPT--------------YVLVRPSPGSSCNKAKIVEAF-KDKGAFL 66
GR V+E +++ +G+P +V PG++ + I E F DK F
Sbjct: 227 GRIVSEGVSTVIAGKPNAGKSTLLNTLLGQERAIVSHMPGTT--RDYIEECFIHDKTMFR 284
Query: 67 LRGTVSDRELMEKI-----------LKEHEIEIVISAVGGEQVEDQLPLIEAIKAVGTIK 115
L T RE E+I + E ++ + + +G E+++D+L I +KA
Sbjct: 285 LTDTAGLREAGEEIEHEGIRRSRMKMAEADLILYLLDLGTERLDDELTEIRELKAAHPAA 344
Query: 116 RFLPSEFGHDVDRA 129
+FL + +DRA
Sbjct: 345 KFLT--VANKLDRA 356
>pdb|1U9I|A Chain A, Crystal Structure Of Circadian Clock Protein Kaic With
Phosphorylation Sites
pdb|1U9I|B Chain B, Crystal Structure Of Circadian Clock Protein Kaic With
Phosphorylation Sites
pdb|1U9I|E Chain E, Crystal Structure Of Circadian Clock Protein Kaic With
Phosphorylation Sites
pdb|1U9I|F Chain F, Crystal Structure Of Circadian Clock Protein Kaic With
Phosphorylation Sites
pdb|2GBL|A Chain A, Crystal Structure Of Full Length Circadian Clock Protein
Kaic With Phosphorylation Sites
pdb|2GBL|B Chain B, Crystal Structure Of Full Length Circadian Clock Protein
Kaic With Phosphorylation Sites
pdb|2GBL|E Chain E, Crystal Structure Of Full Length Circadian Clock Protein
Kaic With Phosphorylation Sites
pdb|2GBL|F Chain F, Crystal Structure Of Full Length Circadian Clock Protein
Kaic With Phosphorylation Sites
pdb|3DVL|A Chain A, Crystal Structure Of Full Length Circadian Clock Protein
Kaic With Correct Geometry At Phosphorylation Sites
pdb|3DVL|B Chain B, Crystal Structure Of Full Length Circadian Clock Protein
Kaic With Correct Geometry At Phosphorylation Sites
pdb|3DVL|C Chain C, Crystal Structure Of Full Length Circadian Clock Protein
Kaic With Correct Geometry At Phosphorylation Sites
pdb|3DVL|D Chain D, Crystal Structure Of Full Length Circadian Clock Protein
Kaic With Correct Geometry At Phosphorylation Sites
pdb|3DVL|E Chain E, Crystal Structure Of Full Length Circadian Clock Protein
Kaic With Correct Geometry At Phosphorylation Sites
pdb|3DVL|F Chain F, Crystal Structure Of Full Length Circadian Clock Protein
Kaic With Correct Geometry At Phosphorylation Sites
Length = 519
Score = 26.6 bits (57), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 30/121 (24%), Positives = 59/121 (48%), Gaps = 7/121 (5%)
Query: 7 ITTGKSRVLVVGATGFIGRFVTEASLASGRPTYVLVRPSPGSSC-NKAK-IVEAFKDKGA 64
+++G R+ + GF + A+ A+G +LV ++C NK + I+ A+++ A
Sbjct: 263 VSSGVVRLDEMCGGGFFKDSIILATGATGTGKTLLVSRFVENACANKERAILFAYEESRA 322
Query: 65 FLLRGTVSDRELMEKILKEHEIEIVISAVGGEQVEDQLPLIEAIKAVGTIKRFLPSEFGH 124
LLR S E++ +++ ++IV + +ED L +I++ I F P+
Sbjct: 323 QLLRNAYSWGMDFEEMERQNLLKIVCAYPESAGLEDHLQIIKS-----EINDFKPARIAI 377
Query: 125 D 125
D
Sbjct: 378 D 378
>pdb|3K0A|A Chain A, Crystal Structure Of The Phosphorylation-Site Mutant S431a
Of The Kaic Circadian Clock Protein
Length = 519
Score = 26.6 bits (57), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 30/121 (24%), Positives = 59/121 (48%), Gaps = 7/121 (5%)
Query: 7 ITTGKSRVLVVGATGFIGRFVTEASLASGRPTYVLVRPSPGSSC-NKAK-IVEAFKDKGA 64
+++G R+ + GF + A+ A+G +LV ++C NK + I+ A+++ A
Sbjct: 263 VSSGVVRLDEMCGGGFFKDSIILATGATGTGKTLLVSRFVENACANKERAILFAYEESRA 322
Query: 65 FLLRGTVSDRELMEKILKEHEIEIVISAVGGEQVEDQLPLIEAIKAVGTIKRFLPSEFGH 124
LLR S E++ +++ ++IV + +ED L +I++ I F P+
Sbjct: 323 QLLRNAYSWGMDFEEMERQNLLKIVCAYPESAGLEDHLQIIKS-----EINDFKPARIAI 377
Query: 125 D 125
D
Sbjct: 378 D 378
>pdb|3K0A|B Chain B, Crystal Structure Of The Phosphorylation-Site Mutant S431a
Of The Kaic Circadian Clock Protein
pdb|3K0A|C Chain C, Crystal Structure Of The Phosphorylation-Site Mutant S431a
Of The Kaic Circadian Clock Protein
pdb|3K0A|D Chain D, Crystal Structure Of The Phosphorylation-Site Mutant S431a
Of The Kaic Circadian Clock Protein
pdb|3K0A|E Chain E, Crystal Structure Of The Phosphorylation-Site Mutant S431a
Of The Kaic Circadian Clock Protein
pdb|3K0A|F Chain F, Crystal Structure Of The Phosphorylation-Site Mutant S431a
Of The Kaic Circadian Clock Protein
Length = 519
Score = 26.6 bits (57), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 30/121 (24%), Positives = 59/121 (48%), Gaps = 7/121 (5%)
Query: 7 ITTGKSRVLVVGATGFIGRFVTEASLASGRPTYVLVRPSPGSSC-NKAK-IVEAFKDKGA 64
+++G R+ + GF + A+ A+G +LV ++C NK + I+ A+++ A
Sbjct: 263 VSSGVVRLDEMCGGGFFKDSIILATGATGTGKTLLVSRFVENACANKERAILFAYEESRA 322
Query: 65 FLLRGTVSDRELMEKILKEHEIEIVISAVGGEQVEDQLPLIEAIKAVGTIKRFLPSEFGH 124
LLR S E++ +++ ++IV + +ED L +I++ I F P+
Sbjct: 323 QLLRNAYSWGMDFEEMERQNLLKIVCAYPESAGLEDHLQIIKS-----EINDFKPARIAI 377
Query: 125 D 125
D
Sbjct: 378 D 378
>pdb|3JZM|A Chain A, Crystal Structure Of The Phosphorylation-Site Mutant T432a
Of The Kaic Circadian Clock Protein
pdb|3JZM|B Chain B, Crystal Structure Of The Phosphorylation-Site Mutant T432a
Of The Kaic Circadian Clock Protein
pdb|3JZM|C Chain C, Crystal Structure Of The Phosphorylation-Site Mutant T432a
Of The Kaic Circadian Clock Protein
pdb|3JZM|D Chain D, Crystal Structure Of The Phosphorylation-Site Mutant T432a
Of The Kaic Circadian Clock Protein
pdb|3JZM|E Chain E, Crystal Structure Of The Phosphorylation-Site Mutant T432a
Of The Kaic Circadian Clock Protein
pdb|3JZM|F Chain F, Crystal Structure Of The Phosphorylation-Site Mutant T432a
Of The Kaic Circadian Clock Protein
Length = 519
Score = 26.6 bits (57), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 30/121 (24%), Positives = 59/121 (48%), Gaps = 7/121 (5%)
Query: 7 ITTGKSRVLVVGATGFIGRFVTEASLASGRPTYVLVRPSPGSSC-NKAK-IVEAFKDKGA 64
+++G R+ + GF + A+ A+G +LV ++C NK + I+ A+++ A
Sbjct: 263 VSSGVVRLDEMCGGGFFKDSIILATGATGTGKTLLVSRFVENACANKERAILFAYEESRA 322
Query: 65 FLLRGTVSDRELMEKILKEHEIEIVISAVGGEQVEDQLPLIEAIKAVGTIKRFLPSEFGH 124
LLR S E++ +++ ++IV + +ED L +I++ I F P+
Sbjct: 323 QLLRNAYSWGMDFEEMERQNLLKIVCAYPESAGLEDHLQIIKS-----EINDFKPARIAI 377
Query: 125 D 125
D
Sbjct: 378 D 378
>pdb|3K0F|A Chain A, Crystal Structure Of The Phosphorylation-Site Double
Mutant T426aT432A OF THE KAIC CIRCADIAN CLOCK PROTEIN
Length = 519
Score = 26.6 bits (57), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 30/121 (24%), Positives = 59/121 (48%), Gaps = 7/121 (5%)
Query: 7 ITTGKSRVLVVGATGFIGRFVTEASLASGRPTYVLVRPSPGSSC-NKAK-IVEAFKDKGA 64
+++G R+ + GF + A+ A+G +LV ++C NK + I+ A+++ A
Sbjct: 263 VSSGVVRLDEMCGGGFFKDSIILATGATGTGKTLLVSRFVENACANKERAILFAYEESRA 322
Query: 65 FLLRGTVSDRELMEKILKEHEIEIVISAVGGEQVEDQLPLIEAIKAVGTIKRFLPSEFGH 124
LLR S E++ +++ ++IV + +ED L +I++ I F P+
Sbjct: 323 QLLRNAYSWGMDFEEMERQNLLKIVCAYPESAGLEDHLQIIKS-----EINDFKPARIAI 377
Query: 125 D 125
D
Sbjct: 378 D 378
>pdb|3K0C|A Chain A, Crystal Structure Of The Phosphorylation-Site Double
Mutant S431aT432E OF THE KAIC CIRCADIAN CLOCK PROTEIN
pdb|3K0C|B Chain B, Crystal Structure Of The Phosphorylation-Site Double
Mutant S431aT432E OF THE KAIC CIRCADIAN CLOCK PROTEIN
pdb|3K0C|E Chain E, Crystal Structure Of The Phosphorylation-Site Double
Mutant S431aT432E OF THE KAIC CIRCADIAN CLOCK PROTEIN
pdb|3K0C|F Chain F, Crystal Structure Of The Phosphorylation-Site Double
Mutant S431aT432E OF THE KAIC CIRCADIAN CLOCK PROTEIN
Length = 519
Score = 26.6 bits (57), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 30/121 (24%), Positives = 59/121 (48%), Gaps = 7/121 (5%)
Query: 7 ITTGKSRVLVVGATGFIGRFVTEASLASGRPTYVLVRPSPGSSC-NKAK-IVEAFKDKGA 64
+++G R+ + GF + A+ A+G +LV ++C NK + I+ A+++ A
Sbjct: 263 VSSGVVRLDEMCGGGFFKDSIILATGATGTGKTLLVSRFVENACANKERAILFAYEESRA 322
Query: 65 FLLRGTVSDRELMEKILKEHEIEIVISAVGGEQVEDQLPLIEAIKAVGTIKRFLPSEFGH 124
LLR S E++ +++ ++IV + +ED L +I++ I F P+
Sbjct: 323 QLLRNAYSWGMDFEEMERQNLLKIVCAYPESAGLEDHLQIIKS-----EINDFKPARIAI 377
Query: 125 D 125
D
Sbjct: 378 D 378
>pdb|1U9I|C Chain C, Crystal Structure Of Circadian Clock Protein Kaic With
Phosphorylation Sites
pdb|1U9I|D Chain D, Crystal Structure Of Circadian Clock Protein Kaic With
Phosphorylation Sites
pdb|2GBL|C Chain C, Crystal Structure Of Full Length Circadian Clock Protein
Kaic With Phosphorylation Sites
pdb|2GBL|D Chain D, Crystal Structure Of Full Length Circadian Clock Protein
Kaic With Phosphorylation Sites
Length = 519
Score = 26.6 bits (57), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 30/121 (24%), Positives = 59/121 (48%), Gaps = 7/121 (5%)
Query: 7 ITTGKSRVLVVGATGFIGRFVTEASLASGRPTYVLVRPSPGSSC-NKAK-IVEAFKDKGA 64
+++G R+ + GF + A+ A+G +LV ++C NK + I+ A+++ A
Sbjct: 263 VSSGVVRLDEMCGGGFFKDSIILATGATGTGKTLLVSRFVENACANKERAILFAYEESRA 322
Query: 65 FLLRGTVSDRELMEKILKEHEIEIVISAVGGEQVEDQLPLIEAIKAVGTIKRFLPSEFGH 124
LLR S E++ +++ ++IV + +ED L +I++ I F P+
Sbjct: 323 QLLRNAYSWGMDFEEMERQNLLKIVCAYPESAGLEDHLQIIKS-----EINDFKPARIAI 377
Query: 125 D 125
D
Sbjct: 378 D 378
>pdb|3HWS|A Chain A, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|B Chain B, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|C Chain C, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|D Chain D, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|E Chain E, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|F Chain F, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
Length = 363
Score = 26.6 bits (57), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 10/18 (55%), Positives = 14/18 (77%)
Query: 4 SNGITTGKSRVLVVGATG 21
SNG+ GKS +L++G TG
Sbjct: 44 SNGVELGKSNILLIGPTG 61
>pdb|3HTE|A Chain A, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|B Chain B, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|C Chain C, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|D Chain D, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|E Chain E, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|F Chain F, Crystal Structure Of Nucleotide-Free Hexameric Clpx
Length = 363
Score = 26.6 bits (57), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 10/18 (55%), Positives = 14/18 (77%)
Query: 4 SNGITTGKSRVLVVGATG 21
SNG+ GKS +L++G TG
Sbjct: 44 SNGVELGKSNILLIGPTG 61
>pdb|3K09|A Chain A, Crystal Structure Of The Phosphorylation-Site Mutant S431d
Of The Kaic Circadian Clock Protein
pdb|3K09|B Chain B, Crystal Structure Of The Phosphorylation-Site Mutant S431d
Of The Kaic Circadian Clock Protein
pdb|3K09|E Chain E, Crystal Structure Of The Phosphorylation-Site Mutant S431d
Of The Kaic Circadian Clock Protein
Length = 519
Score = 26.6 bits (57), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 30/121 (24%), Positives = 59/121 (48%), Gaps = 7/121 (5%)
Query: 7 ITTGKSRVLVVGATGFIGRFVTEASLASGRPTYVLVRPSPGSSC-NKAK-IVEAFKDKGA 64
+++G R+ + GF + A+ A+G +LV ++C NK + I+ A+++ A
Sbjct: 263 VSSGVVRLDEMCGGGFFKDSIILATGATGTGKTLLVSRFVENACANKERAILFAYEESRA 322
Query: 65 FLLRGTVSDRELMEKILKEHEIEIVISAVGGEQVEDQLPLIEAIKAVGTIKRFLPSEFGH 124
LLR S E++ +++ ++IV + +ED L +I++ I F P+
Sbjct: 323 QLLRNAYSWGMDFEEMERQNLLKIVCAYPESAGLEDHLQIIKS-----EINDFKPARIAI 377
Query: 125 D 125
D
Sbjct: 378 D 378
>pdb|4IJM|A Chain A, Crystal Structure Of Circadian Clock Protein Kaic A422v
Mutant
pdb|4IJM|B Chain B, Crystal Structure Of Circadian Clock Protein Kaic A422v
Mutant
pdb|4IJM|C Chain C, Crystal Structure Of Circadian Clock Protein Kaic A422v
Mutant
pdb|4IJM|D Chain D, Crystal Structure Of Circadian Clock Protein Kaic A422v
Mutant
pdb|4IJM|E Chain E, Crystal Structure Of Circadian Clock Protein Kaic A422v
Mutant
pdb|4IJM|F Chain F, Crystal Structure Of Circadian Clock Protein Kaic A422v
Mutant
Length = 512
Score = 26.6 bits (57), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 30/121 (24%), Positives = 59/121 (48%), Gaps = 7/121 (5%)
Query: 7 ITTGKSRVLVVGATGFIGRFVTEASLASGRPTYVLVRPSPGSSC-NKAK-IVEAFKDKGA 64
+++G R+ + GF + A+ A+G +LV ++C NK + I+ A+++ A
Sbjct: 250 VSSGVVRLDEMCGGGFFKDSIILATGATGTGKTLLVSRFVENACANKERAILFAYEESRA 309
Query: 65 FLLRGTVSDRELMEKILKEHEIEIVISAVGGEQVEDQLPLIEAIKAVGTIKRFLPSEFGH 124
LLR S E++ +++ ++IV + +ED L +I++ I F P+
Sbjct: 310 QLLRNAYSWGMDFEEMERQNLLKIVCAYPESAGLEDHLQIIKS-----EINDFKPARIAI 364
Query: 125 D 125
D
Sbjct: 365 D 365
>pdb|1TF7|A Chain A, Crystal Structure Of Circadian Clock Protein Kaic
pdb|1TF7|B Chain B, Crystal Structure Of Circadian Clock Protein Kaic
pdb|1TF7|C Chain C, Crystal Structure Of Circadian Clock Protein Kaic
pdb|1TF7|D Chain D, Crystal Structure Of Circadian Clock Protein Kaic
pdb|1TF7|E Chain E, Crystal Structure Of Circadian Clock Protein Kaic
pdb|1TF7|F Chain F, Crystal Structure Of Circadian Clock Protein Kaic
Length = 525
Score = 26.6 bits (57), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 30/121 (24%), Positives = 59/121 (48%), Gaps = 7/121 (5%)
Query: 7 ITTGKSRVLVVGATGFIGRFVTEASLASGRPTYVLVRPSPGSSC-NKAK-IVEAFKDKGA 64
+++G R+ + GF + A+ A+G +LV ++C NK + I+ A+++ A
Sbjct: 263 VSSGVVRLDEMCGGGFFKDSIILATGATGTGKTLLVSRFVENACANKERAILFAYEESRA 322
Query: 65 FLLRGTVSDRELMEKILKEHEIEIVISAVGGEQVEDQLPLIEAIKAVGTIKRFLPSEFGH 124
LLR S E++ +++ ++IV + +ED L +I++ I F P+
Sbjct: 323 QLLRNAYSWGMDFEEMERQNLLKIVCAYPESAGLEDHLQIIKS-----EINDFKPARIAI 377
Query: 125 D 125
D
Sbjct: 378 D 378
>pdb|3K0F|B Chain B, Crystal Structure Of The Phosphorylation-Site Double
Mutant T426aT432A OF THE KAIC CIRCADIAN CLOCK PROTEIN
pdb|3K0F|C Chain C, Crystal Structure Of The Phosphorylation-Site Double
Mutant T426aT432A OF THE KAIC CIRCADIAN CLOCK PROTEIN
pdb|3K0F|D Chain D, Crystal Structure Of The Phosphorylation-Site Double
Mutant T426aT432A OF THE KAIC CIRCADIAN CLOCK PROTEIN
pdb|3K0F|E Chain E, Crystal Structure Of The Phosphorylation-Site Double
Mutant T426aT432A OF THE KAIC CIRCADIAN CLOCK PROTEIN
pdb|3K0F|F Chain F, Crystal Structure Of The Phosphorylation-Site Double
Mutant T426aT432A OF THE KAIC CIRCADIAN CLOCK PROTEIN
Length = 519
Score = 26.6 bits (57), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 30/121 (24%), Positives = 59/121 (48%), Gaps = 7/121 (5%)
Query: 7 ITTGKSRVLVVGATGFIGRFVTEASLASGRPTYVLVRPSPGSSC-NKAK-IVEAFKDKGA 64
+++G R+ + GF + A+ A+G +LV ++C NK + I+ A+++ A
Sbjct: 263 VSSGVVRLDEMCGGGFFKDSIILATGATGTGKTLLVSRFVENACANKERAILFAYEESRA 322
Query: 65 FLLRGTVSDRELMEKILKEHEIEIVISAVGGEQVEDQLPLIEAIKAVGTIKRFLPSEFGH 124
LLR S E++ +++ ++IV + +ED L +I++ I F P+
Sbjct: 323 QLLRNAYSWGMDFEEMERQNLLKIVCAYPESAGLEDHLQIIKS-----EINDFKPARIAI 377
Query: 125 D 125
D
Sbjct: 378 D 378
>pdb|3K0C|C Chain C, Crystal Structure Of The Phosphorylation-Site Double
Mutant S431aT432E OF THE KAIC CIRCADIAN CLOCK PROTEIN
pdb|3K0C|D Chain D, Crystal Structure Of The Phosphorylation-Site Double
Mutant S431aT432E OF THE KAIC CIRCADIAN CLOCK PROTEIN
Length = 519
Score = 26.6 bits (57), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 30/121 (24%), Positives = 59/121 (48%), Gaps = 7/121 (5%)
Query: 7 ITTGKSRVLVVGATGFIGRFVTEASLASGRPTYVLVRPSPGSSC-NKAK-IVEAFKDKGA 64
+++G R+ + GF + A+ A+G +LV ++C NK + I+ A+++ A
Sbjct: 263 VSSGVVRLDEMCGGGFFKDSIILATGATGTGKTLLVSRFVENACANKERAILFAYEESRA 322
Query: 65 FLLRGTVSDRELMEKILKEHEIEIVISAVGGEQVEDQLPLIEAIKAVGTIKRFLPSEFGH 124
LLR S E++ +++ ++IV + +ED L +I++ I F P+
Sbjct: 323 QLLRNAYSWGMDFEEMERQNLLKIVCAYPESAGLEDHLQIIKS-----EINDFKPARIAI 377
Query: 125 D 125
D
Sbjct: 378 D 378
>pdb|3K09|C Chain C, Crystal Structure Of The Phosphorylation-Site Mutant S431d
Of The Kaic Circadian Clock Protein
pdb|3K09|D Chain D, Crystal Structure Of The Phosphorylation-Site Mutant S431d
Of The Kaic Circadian Clock Protein
pdb|3K09|F Chain F, Crystal Structure Of The Phosphorylation-Site Mutant S431d
Of The Kaic Circadian Clock Protein
Length = 519
Score = 26.6 bits (57), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 30/121 (24%), Positives = 59/121 (48%), Gaps = 7/121 (5%)
Query: 7 ITTGKSRVLVVGATGFIGRFVTEASLASGRPTYVLVRPSPGSSC-NKAK-IVEAFKDKGA 64
+++G R+ + GF + A+ A+G +LV ++C NK + I+ A+++ A
Sbjct: 263 VSSGVVRLDEMCGGGFFKDSIILATGATGTGKTLLVSRFVENACANKERAILFAYEESRA 322
Query: 65 FLLRGTVSDRELMEKILKEHEIEIVISAVGGEQVEDQLPLIEAIKAVGTIKRFLPSEFGH 124
LLR S E++ +++ ++IV + +ED L +I++ I F P+
Sbjct: 323 QLLRNAYSWGMDFEEMERQNLLKIVCAYPESAGLEDHLQIIKS-----EINDFKPARIAI 377
Query: 125 D 125
D
Sbjct: 378 D 378
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.138 0.408
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,533,018
Number of Sequences: 62578
Number of extensions: 196714
Number of successful extensions: 674
Number of sequences better than 100.0: 76
Number of HSP's better than 100.0 without gapping: 44
Number of HSP's successfully gapped in prelim test: 32
Number of HSP's that attempted gapping in prelim test: 608
Number of HSP's gapped (non-prelim): 76
length of query: 194
length of database: 14,973,337
effective HSP length: 94
effective length of query: 100
effective length of database: 9,091,005
effective search space: 909100500
effective search space used: 909100500
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 49 (23.5 bits)