BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 046142
(132 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P26861|RM06_MARPO 60S ribosomal protein L6, mitochondrial OS=Marchantia polymorpha
GN=RPL6 PE=3 SV=2
Length = 101
Score = 126 bits (317), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 59/101 (58%), Positives = 77/101 (76%)
Query: 30 MEAKFLRFLKIVGVGYKARAEAEGRLLYLKLGYVHDVELTVPSAVRIFCLKNNVVCCCGL 89
MEAKF FL+I+GVGYKA A+G +LYLKLG+ H++ L V +VR+FCLK N++CC G+
Sbjct: 1 MEAKFFCFLEIIGVGYKASTNAQGSILYLKLGFSHEIRLQVTPSVRVFCLKPNLICCTGM 60
Query: 90 DKHRVHQFAASVRSRKPPDPFKGKGIMCADEVIKKKVGKKK 130
D +V QFAA V+S KPP+ +KGKGI +E+I KK GKKK
Sbjct: 61 DHQKVTQFAAIVKSCKPPEVYKGKGIQYRNEIIHKKQGKKK 101
>sp|Q8EUC8|RL6_MYCPE 50S ribosomal protein L6 OS=Mycoplasma penetrans (strain HF-2)
GN=rplF PE=3 SV=1
Length = 183
Score = 93.6 bits (231), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 47/114 (41%), Positives = 69/114 (60%), Gaps = 2/114 (1%)
Query: 15 LNHMSNLCDKFTLTWMEAKFLRFLKIVGVGYKARAEAEGRLLYLKLGYVHDVELTVPSAV 74
L+ +N L + + + LKIVGVGYKA G + L LGY H ++L +P+ +
Sbjct: 65 LHGTTNANINNALIGVNSGHTKKLKIVGVGYKA--AVNGNKINLNLGYSHPIDLEIPAGL 122
Query: 75 RIFCLKNNVVCCCGLDKHRVHQFAASVRSRKPPDPFKGKGIMCADEVIKKKVGK 128
+ C + V G DK V QFAA +RS++PP+P+KGKG+ ++EVI +KVGK
Sbjct: 123 NVTCPQATEVVITGADKAVVGQFAAVIRSKRPPEPYKGKGVAYSNEVIIRKVGK 176
>sp|B2IK77|RL6_BEII9 50S ribosomal protein L6 OS=Beijerinckia indica subsp. indica
(strain ATCC 9039 / DSM 1715 / NCIB 8712) GN=rplF PE=3
SV=1
Length = 177
Score = 93.2 bits (230), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 46/97 (47%), Positives = 60/97 (61%), Gaps = 2/97 (2%)
Query: 34 FLRFLKIVGVGYKARAEAEGRLLYLKLGYVHDVELTVPSAVRIFCLKNNVVCCCGLDKHR 93
F R L+I GVGYKA +G+ L L LGY HD+ +P + I K V G+DK R
Sbjct: 83 FERKLEITGVGYKA--AVQGKNLQLSLGYSHDISFPIPDGIAIAAPKPTEVSITGIDKQR 140
Query: 94 VHQFAASVRSRKPPDPFKGKGIMCADEVIKKKVGKKK 130
V Q AA +R+ +PP+P+KGKG+ A E I +K GKKK
Sbjct: 141 VGQIAAEIRALRPPEPYKGKGVKYAGEFIFRKEGKKK 177
>sp|Q1QN15|RL6_NITHX 50S ribosomal protein L6 OS=Nitrobacter hamburgensis (strain X14 /
DSM 10229) GN=rplF PE=3 SV=1
Length = 177
Score = 92.4 bits (228), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 46/97 (47%), Positives = 59/97 (60%), Gaps = 2/97 (2%)
Query: 34 FLRFLKIVGVGYKARAEAEGRLLYLKLGYVHDVELTVPSAVRIFCLKNNVVCCCGLDKHR 93
F + L+IVGVGY RA +G+ L L LGY HDV +P + I K + G D R
Sbjct: 83 FEKKLEIVGVGY--RAALQGKTLQLALGYSHDVSYAIPEGITIAVPKPTEITIAGNDAQR 140
Query: 94 VHQFAASVRSRKPPDPFKGKGIMCADEVIKKKVGKKK 130
V Q AA +R +PP+P+KGKG+ ADE I +K GKKK
Sbjct: 141 VGQVAAEIRGYRPPEPYKGKGVKYADEFIFRKEGKKK 177
>sp|Q28UT9|RL6_JANSC 50S ribosomal protein L6 OS=Jannaschia sp. (strain CCS1) GN=rplF
PE=3 SV=1
Length = 177
Score = 92.0 bits (227), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 50/113 (44%), Positives = 67/113 (59%), Gaps = 2/113 (1%)
Query: 18 MSNLCDKFTLTWMEAKFLRFLKIVGVGYKARAEAEGRLLYLKLGYVHDVELTVPSAVRIF 77
MS + +T + F + L+I GVGY RA+ +G +L L LGY HDV+ TVP V +
Sbjct: 67 MSRTMVQNLVTGVTDGFKKELEITGVGY--RAQMQGNVLKLSLGYSHDVDFTVPEGVTVT 124
Query: 78 CLKNNVVCCCGLDKHRVHQFAASVRSRKPPDPFKGKGIMCADEVIKKKVGKKK 130
C KN V G D+ V Q AA++R + P+P+KGKGI E I +K GKKK
Sbjct: 125 CPKNTEVIIEGNDQQLVGQVAANIREWRAPEPYKGKGIRYKGEYIFRKEGKKK 177
>sp|Q3SSV1|RL6_NITWN 50S ribosomal protein L6 OS=Nitrobacter winogradskyi (strain Nb-255
/ ATCC 25391) GN=rplF PE=3 SV=1
Length = 177
Score = 91.7 bits (226), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 46/97 (47%), Positives = 59/97 (60%), Gaps = 2/97 (2%)
Query: 34 FLRFLKIVGVGYKARAEAEGRLLYLKLGYVHDVELTVPSAVRIFCLKNNVVCCCGLDKHR 93
F + L+I+GVGY RA +G+ L L LGY HDV VP + I K + G D R
Sbjct: 83 FEKKLEIIGVGY--RAALQGKSLQLALGYSHDVNYAVPEGITIAVPKPTEITITGNDAQR 140
Query: 94 VHQFAASVRSRKPPDPFKGKGIMCADEVIKKKVGKKK 130
V Q AA +R +PP+P+KGKG+ ADE I +K GKKK
Sbjct: 141 VGQVAAEIRGYRPPEPYKGKGVKYADETIFRKEGKKK 177
>sp|Q1GPB4|RL6_SPHAL 50S ribosomal protein L6 OS=Sphingopyxis alaskensis (strain DSM
13593 / LMG 18877 / RB2256) GN=rplF PE=3 SV=1
Length = 177
Score = 91.7 bits (226), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 46/104 (44%), Positives = 63/104 (60%), Gaps = 2/104 (1%)
Query: 27 LTWMEAKFLRFLKIVGVGYKARAEAEGRLLYLKLGYVHDVELTVPSAVRIFCLKNNVVCC 86
+T + F + L+I GVGY RA A+G+ L L+LGY HDV+ VP + I N +
Sbjct: 76 VTGVTEGFTKVLEITGVGY--RANAQGKNLKLQLGYSHDVDFAVPDGIEIKTPDNTTIEI 133
Query: 87 CGLDKHRVHQFAASVRSRKPPDPFKGKGIMCADEVIKKKVGKKK 130
G+DK +V Q AA +R + P+P+KGKGI E I +K GKKK
Sbjct: 134 SGIDKQQVGQVAAEIRRWRKPEPYKGKGIKYRGEYIFRKEGKKK 177
>sp|Q2RQX5|RL6_RHORT 50S ribosomal protein L6 OS=Rhodospirillum rubrum (strain ATCC
11170 / NCIB 8255) GN=rplF PE=3 SV=1
Length = 177
Score = 91.7 bits (226), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 45/97 (46%), Positives = 64/97 (65%), Gaps = 2/97 (2%)
Query: 34 FLRFLKIVGVGYKARAEAEGRLLYLKLGYVHDVELTVPSAVRIFCLKNNVVCCCGLDKHR 93
F R L++VGVGYKA A+G++L L LG+ HDV+ +P ++I N + G+DK R
Sbjct: 83 FSRKLELVGVGYKA--AAQGKVLKLSLGFSHDVDFPIPEDLKITTPAPNQIEISGVDKQR 140
Query: 94 VHQFAASVRSRKPPDPFKGKGIMCADEVIKKKVGKKK 130
V Q A+ +RS + P+P+KGKG+ A E I +K GKKK
Sbjct: 141 VGQIASEIRSYRSPEPYKGKGVKYAGEQILRKEGKKK 177
>sp|Q2N9C6|RL6_ERYLH 50S ribosomal protein L6 OS=Erythrobacter litoralis (strain
HTCC2594) GN=rplF PE=3 SV=1
Length = 177
Score = 90.9 bits (224), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 47/113 (41%), Positives = 66/113 (58%), Gaps = 7/113 (6%)
Query: 18 MSNLCDKFTLTWMEAKFLRFLKIVGVGYKARAEAEGRLLYLKLGYVHDVELTVPSAVRIF 77
+SNL + T F + L+I GVGY RA+A+G+ L L+LGY HDV++ VP + +
Sbjct: 72 VSNLVEGVT-----EGFSKTLEISGVGY--RAQAQGKTLKLQLGYSHDVDIAVPEGLEVK 124
Query: 78 CLKNNVVCCCGLDKHRVHQFAASVRSRKPPDPFKGKGIMCADEVIKKKVGKKK 130
V G+DK V Q AA +R + P+P+KGKGI E + +K GKKK
Sbjct: 125 TPDQTTVIISGIDKQAVGQLAAEIRQWRKPEPYKGKGIKYQGEYVFRKEGKKK 177
>sp|Q3J8S9|RL6_NITOC 50S ribosomal protein L6 OS=Nitrosococcus oceani (strain ATCC 19707
/ NCIMB 11848) GN=rplF PE=3 SV=1
Length = 178
Score = 90.9 bits (224), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 46/97 (47%), Positives = 61/97 (62%), Gaps = 2/97 (2%)
Query: 34 FLRFLKIVGVGYKARAEAEGRLLYLKLGYVHDVELTVPSAVRIFCLKNNVVCCCGLDKHR 93
F R L++VGVGY RA+ +GR L L LGY H VE T P + I + G DK +
Sbjct: 84 FERRLQLVGVGY--RAQLQGRKLVLSLGYSHPVEFTAPEGLTIEVPSPTEIIVKGYDKQQ 141
Query: 94 VHQFAASVRSRKPPDPFKGKGIMCADEVIKKKVGKKK 130
V Q AA++R +PP+P+KGKG+ ADEV+ +K KKK
Sbjct: 142 VGQAAANIRRFRPPEPYKGKGVRYADEVVVRKEAKKK 178
>sp|Q2G8W5|RL6_NOVAD 50S ribosomal protein L6 OS=Novosphingobium aromaticivorans (strain
DSM 12444) GN=rplF PE=3 SV=1
Length = 177
Score = 90.5 bits (223), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 48/111 (43%), Positives = 65/111 (58%), Gaps = 3/111 (2%)
Query: 20 NLCDKFTLTWMEAKFLRFLKIVGVGYKARAEAEGRLLYLKLGYVHDVELTVPSAVRIFCL 79
L D +T + + + L+I GVGY RA A+G+ L L+LGY HDV+ VP + I
Sbjct: 70 TLVDNL-VTGVTQGYTKVLEITGVGY--RANAQGKNLKLQLGYSHDVDFPVPEGIEIKTP 126
Query: 80 KNNVVCCCGLDKHRVHQFAASVRSRKPPDPFKGKGIMCADEVIKKKVGKKK 130
N V G+DK +V Q AA +R + P+P+KGKGI E I +K GKKK
Sbjct: 127 DNTTVEISGIDKQKVGQVAAEIRRWRKPEPYKGKGIKYRGEFIFRKEGKKK 177
>sp|B6JEY0|RL6_OLICO 50S ribosomal protein L6 OS=Oligotropha carboxidovorans (strain
ATCC 49405 / DSM 1227 / OM5) GN=rplF PE=3 SV=1
Length = 177
Score = 90.5 bits (223), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 49/117 (41%), Positives = 66/117 (56%), Gaps = 7/117 (5%)
Query: 14 ALNHMSNLCDKFTLTWMEAKFLRFLKIVGVGYKARAEAEGRLLYLKLGYVHDVELTVPSA 73
A ++NL + T F + L+I GVGY RA +G+ L L LGY HDV VP
Sbjct: 68 ARAQIANLVEGVT-----KGFEKKLEITGVGY--RAALQGKNLQLSLGYSHDVVYPVPEG 120
Query: 74 VRIFCLKNNVVCCCGLDKHRVHQFAASVRSRKPPDPFKGKGIMCADEVIKKKVGKKK 130
+ I K + G+D RV Q AA +R +PP+P+KGKG+ A+E I +K GKKK
Sbjct: 121 ITITVPKPTEITVAGIDSQRVGQVAAEIRGYRPPEPYKGKGVKYANEFIFRKEGKKK 177
>sp|B8ISA0|RL6_METNO 50S ribosomal protein L6 OS=Methylobacterium nodulans (strain
ORS2060 / LMG 21967) GN=rplF PE=3 SV=1
Length = 177
Score = 90.5 bits (223), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 47/114 (41%), Positives = 67/114 (58%), Gaps = 7/114 (6%)
Query: 17 HMSNLCDKFTLTWMEAKFLRFLKIVGVGYKARAEAEGRLLYLKLGYVHDVELTVPSAVRI 76
++NL + T F + L+I GVGY RA G++L L LGY HD+E +P+ + I
Sbjct: 71 QVANLVEGVT-----KGFEKKLEINGVGY--RAAVAGKVLKLSLGYSHDIEYEIPAGITI 123
Query: 77 FCLKNNVVCCCGLDKHRVHQFAASVRSRKPPDPFKGKGIMCADEVIKKKVGKKK 130
+ + G+DK RV Q AA +R + P+P+KGKG+ ADE I +K GKKK
Sbjct: 124 TTPRPVEIIVAGIDKQRVGQIAAEIREYRSPEPYKGKGVKYADEFIFRKEGKKK 177
>sp|A1TYL2|RL6_MARAV 50S ribosomal protein L6 OS=Marinobacter aquaeolei (strain ATCC
700491 / DSM 11845 / VT8) GN=rplF PE=3 SV=1
Length = 177
Score = 90.5 bits (223), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 45/113 (39%), Positives = 67/113 (59%), Gaps = 7/113 (6%)
Query: 18 MSNLCDKFTLTWMEAKFLRFLKIVGVGYKARAEAEGRLLYLKLGYVHDVELTVPSAVRIF 77
++N+ + W R L++ GVGY RA+A+G+ L L LG+ H VE +P V
Sbjct: 72 VNNMVTGVSTGWE-----RKLQLTGVGY--RAQAQGKKLNLTLGFSHPVEYELPEGVTAE 124
Query: 78 CLKNNVVCCCGLDKHRVHQFAASVRSRKPPDPFKGKGIMCADEVIKKKVGKKK 130
N V G+DK +V Q AA +R+ +PP+P+KGKG+ ADE +++K KKK
Sbjct: 125 TPSNTEVVIRGIDKQQVGQVAAEIRAFRPPEPYKGKGVRYADEQVRRKEAKKK 177
>sp|Q6F1X9|RL6_MESFL 50S ribosomal protein L6 OS=Mesoplasma florum (strain ATCC 33453 /
NBRC 100688 / NCTC 11704 / L1) GN=rplF PE=3 SV=1
Length = 180
Score = 90.1 bits (222), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 53/135 (39%), Positives = 71/135 (52%), Gaps = 6/135 (4%)
Query: 2 GANRTTPICNE----DALNHMSNLCDKFTLTWMEAKFLRFLKIVGVGYKARAEAEGRLLY 57
GA +T NE L+ +N + L + F + L I GVGY RA G L
Sbjct: 48 GAELSTTRANEIKHTKQLHGTTNSLLQGMLIGVSEGFKKTLDINGVGY--RAALAGSKLN 105
Query: 58 LKLGYVHDVELTVPSAVRIFCLKNNVVCCCGLDKHRVHQFAASVRSRKPPDPFKGKGIMC 117
L LGY H VE T+P + + C K + G+DK V Q AA +RS + P+P+KGKGI
Sbjct: 106 LSLGYSHPVEYTIPQGITVECPKPTQIIISGIDKQVVGQVAAEIRSYRRPEPYKGKGIKY 165
Query: 118 ADEVIKKKVGKKKSK 132
+DE+I +K GK K
Sbjct: 166 SDEIIIRKEGKAAGK 180
>sp|Q134U4|RL6_RHOPS 50S ribosomal protein L6 OS=Rhodopseudomonas palustris (strain
BisB5) GN=rplF PE=3 SV=1
Length = 177
Score = 89.7 bits (221), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 48/117 (41%), Positives = 66/117 (56%), Gaps = 7/117 (5%)
Query: 14 ALNHMSNLCDKFTLTWMEAKFLRFLKIVGVGYKARAEAEGRLLYLKLGYVHDVELTVPSA 73
A ++NL D T F + L+I GVGY RA +G+ L L LGY HDV +P
Sbjct: 68 ARAQIANLVDGVT-----KGFEKKLEITGVGY--RASLQGKKLQLALGYSHDVIYDIPEG 120
Query: 74 VRIFCLKNNVVCCCGLDKHRVHQFAASVRSRKPPDPFKGKGIMCADEVIKKKVGKKK 130
+ I K + G+D +V Q AA +R +PP+P+KGKG+ +DE I +K GKKK
Sbjct: 121 ITITVPKPTEINVVGIDSQKVGQVAAEIRDYRPPEPYKGKGVRYSDEFIFRKEGKKK 177
>sp|Q5NQ50|RL6_ZYMMO 50S ribosomal protein L6 OS=Zymomonas mobilis subsp. mobilis
(strain ATCC 31821 / ZM4 / CP4) GN=rplF PE=3 SV=1
Length = 177
Score = 89.7 bits (221), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 46/113 (40%), Positives = 66/113 (58%), Gaps = 7/113 (6%)
Query: 18 MSNLCDKFTLTWMEAKFLRFLKIVGVGYKARAEAEGRLLYLKLGYVHDVELTVPSAVRIF 77
+ NL D T + + L+I GVGY RA ++G+ L L+LGY HD++ +P + I
Sbjct: 72 VQNLIDGVT-----QGYSKTLQITGVGY--RAASQGKTLKLQLGYSHDIDFAIPEGITIQ 124
Query: 78 CLKNNVVCCCGLDKHRVHQFAASVRSRKPPDPFKGKGIMCADEVIKKKVGKKK 130
+ V G+DK +V Q AA +R + P+P+KGKGI A E I +K GKKK
Sbjct: 125 TPEPTTVNISGIDKQKVGQVAAEIRRWRRPEPYKGKGIKYAGEFIFRKEGKKK 177
>sp|A7HM37|RL6_FERNB 50S ribosomal protein L6 OS=Fervidobacterium nodosum (strain ATCC
35602 / DSM 5306 / Rt17-B1) GN=rplF PE=3 SV=1
Length = 184
Score = 89.7 bits (221), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 45/96 (46%), Positives = 60/96 (62%), Gaps = 2/96 (2%)
Query: 34 FLRFLKIVGVGYKARAEAEGRLLYLKLGYVHDVELTVPSAVRIFCLKNNVVCCCGLDKHR 93
F + L+IVGVGY RA+ +G L + LGY H VE VP+ V++ N + G+DK R
Sbjct: 90 FKKELEIVGVGY--RAQLQGNKLIMNLGYAHQVEFDVPADVKVEVPAPNKIIVSGIDKQR 147
Query: 94 VHQFAASVRSRKPPDPFKGKGIMCADEVIKKKVGKK 129
V Q AA +R + P+P+ GKGI DEV+K K GKK
Sbjct: 148 VGQVAADIRKWREPNPYSGKGIKYVDEVLKLKEGKK 183
>sp|A4YSK7|RL6_BRASO 50S ribosomal protein L6 OS=Bradyrhizobium sp. (strain ORS278)
GN=rplF PE=3 SV=1
Length = 177
Score = 89.4 bits (220), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 48/117 (41%), Positives = 66/117 (56%), Gaps = 7/117 (5%)
Query: 14 ALNHMSNLCDKFTLTWMEAKFLRFLKIVGVGYKARAEAEGRLLYLKLGYVHDVELTVPSA 73
A ++NL + T F + L+I GVGY RA +G+ L L LGY HDV +P
Sbjct: 68 ARAQIANLVEGVT-----KGFEKKLEITGVGY--RAAMQGKNLQLALGYSHDVVYQIPEG 120
Query: 74 VRIFCLKNNVVCCCGLDKHRVHQFAASVRSRKPPDPFKGKGIMCADEVIKKKVGKKK 130
+ I K + G+D RV Q AA +R+ +PP+P+KGKG+ A E I +K GKKK
Sbjct: 121 ITIAVPKPTEITITGIDPQRVGQVAAEIRAYRPPEPYKGKGVKYAGEFIFRKEGKKK 177
>sp|A5ELL2|RL6_BRASB 50S ribosomal protein L6 OS=Bradyrhizobium sp. (strain BTAi1 / ATCC
BAA-1182) GN=rplF PE=3 SV=1
Length = 177
Score = 89.4 bits (220), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 48/117 (41%), Positives = 66/117 (56%), Gaps = 7/117 (5%)
Query: 14 ALNHMSNLCDKFTLTWMEAKFLRFLKIVGVGYKARAEAEGRLLYLKLGYVHDVELTVPSA 73
A ++NL + T F + L+I GVGY RA +G+ L L LGY HDV +P
Sbjct: 68 ARAQIANLVEGVT-----KGFEKKLEITGVGY--RAAMQGKNLQLALGYSHDVVYQIPEG 120
Query: 74 VRIFCLKNNVVCCCGLDKHRVHQFAASVRSRKPPDPFKGKGIMCADEVIKKKVGKKK 130
+ I K + G+D RV Q AA +R+ +PP+P+KGKG+ A E I +K GKKK
Sbjct: 121 ITIAVPKPTEITVTGIDPQRVGQVAAEIRAYRPPEPYKGKGVKYAGEFIFRKEGKKK 177
>sp|A5V5Y7|RL6_SPHWW 50S ribosomal protein L6 OS=Sphingomonas wittichii (strain RW1 /
DSM 6014 / JCM 10273) GN=rplF PE=3 SV=1
Length = 177
Score = 89.4 bits (220), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 44/104 (42%), Positives = 62/104 (59%), Gaps = 2/104 (1%)
Query: 27 LTWMEAKFLRFLKIVGVGYKARAEAEGRLLYLKLGYVHDVELTVPSAVRIFCLKNNVVCC 86
+T + + + L+I GVGY RA +G+ L L+LGY HDV+ +P + I V
Sbjct: 76 ITGVTEGYSKTLQITGVGY--RANVQGKNLKLQLGYSHDVDFAIPEGITIATPDQTTVQI 133
Query: 87 CGLDKHRVHQFAASVRSRKPPDPFKGKGIMCADEVIKKKVGKKK 130
G+DK +V Q AA +R + P+P+KGKGI A E I +K GKKK
Sbjct: 134 SGIDKQKVGQVAAEIRRWRKPEPYKGKGIKYAGEYIFRKEGKKK 177
>sp|Q07KN3|RL6_RHOP5 50S ribosomal protein L6 OS=Rhodopseudomonas palustris (strain
BisA53) GN=rplF PE=3 SV=1
Length = 177
Score = 89.4 bits (220), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 49/117 (41%), Positives = 67/117 (57%), Gaps = 7/117 (5%)
Query: 14 ALNHMSNLCDKFTLTWMEAKFLRFLKIVGVGYKARAEAEGRLLYLKLGYVHDVELTVPSA 73
A ++NL + T F + L+I GVGY RA +G+ L L LGY HDV T+P
Sbjct: 68 ARAQVANLVEGVT-----KGFEKKLEITGVGY--RATLQGKNLQLALGYSHDVVYTIPEG 120
Query: 74 VRIFCLKNNVVCCCGLDKHRVHQFAASVRSRKPPDPFKGKGIMCADEVIKKKVGKKK 130
+ I K + G+D V Q AA +RS +PP+P+KGKG+ A+E I +K GKKK
Sbjct: 121 IAITVPKPTEINIVGIDSQVVGQVAAEIRSYRPPEPYKGKGVRYANEFIFRKEGKKK 177
>sp|B0UHV4|RL6_METS4 50S ribosomal protein L6 OS=Methylobacterium sp. (strain 4-46)
GN=rplF PE=3 SV=1
Length = 177
Score = 89.4 bits (220), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 47/114 (41%), Positives = 67/114 (58%), Gaps = 7/114 (6%)
Query: 17 HMSNLCDKFTLTWMEAKFLRFLKIVGVGYKARAEAEGRLLYLKLGYVHDVELTVPSAVRI 76
++NL + T F + L+I GVGY RA G++L L LGY HDVE +P+ + I
Sbjct: 71 QVANLIEGVT-----KGFEKKLEINGVGY--RAAVAGKVLKLSLGYSHDVEYEIPAGITI 123
Query: 77 FCLKNNVVCCCGLDKHRVHQFAASVRSRKPPDPFKGKGIMCADEVIKKKVGKKK 130
+ + G+DK RV Q AA +R + P+P+KGKG+ +DE I +K GKKK
Sbjct: 124 TTPRPVEIIVAGIDKQRVGQIAAEIREYRGPEPYKGKGVKYSDEFIFRKEGKKK 177
>sp|O23049|RK6_ARATH 50S ribosomal protein L6, chloroplastic OS=Arabidopsis thaliana
GN=RPL6 PE=1 SV=1
Length = 223
Score = 89.4 bits (220), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 43/116 (37%), Positives = 70/116 (60%), Gaps = 5/116 (4%)
Query: 16 NHMSNLCDKFT---LTWMEAKFLRFLKIVGVGYKARAEAEGRLLYLKLGYVHDVELTVPS 72
N M L T + + F + L +VGVGY RA +G+ L L LG+ H V++ +P
Sbjct: 105 NQMHGLFRTLTDNMVVGVSKGFEKKLILVGVGY--RATVDGKELVLNLGFSHPVKMQIPD 162
Query: 73 AVRIFCLKNNVVCCCGLDKHRVHQFAASVRSRKPPDPFKGKGIMCADEVIKKKVGK 128
++++ +N + G DK + QFAA+VR +PP+P+KGKG+ +DE++++K GK
Sbjct: 163 SLKVKVEENTRITVSGYDKSEIGQFAATVRKWRPPEPYKGKGVKYSDEIVRRKEGK 218
>sp|B8ELE8|RL6_METSB 50S ribosomal protein L6 OS=Methylocella silvestris (strain BL2 /
DSM 15510 / NCIMB 13906) GN=rplF PE=3 SV=1
Length = 177
Score = 89.0 bits (219), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 44/97 (45%), Positives = 59/97 (60%), Gaps = 2/97 (2%)
Query: 34 FLRFLKIVGVGYKARAEAEGRLLYLKLGYVHDVELTVPSAVRIFCLKNNVVCCCGLDKHR 93
F R L+I GVGYKA G+ L L LG+ HDV +P + I K V G+DK +
Sbjct: 83 FERKLEITGVGYKA--AVSGKNLQLSLGFSHDVTFPIPDGISIVAAKPTEVAISGIDKRQ 140
Query: 94 VHQFAASVRSRKPPDPFKGKGIMCADEVIKKKVGKKK 130
V Q A+ +R+ +PP+P+KGKG+ A E I +K GKKK
Sbjct: 141 VGQIASEIRALRPPEPYKGKGVKYAGEFIFRKEGKKK 177
>sp|B3QBW5|RL6_RHOPT 50S ribosomal protein L6 OS=Rhodopseudomonas palustris (strain
TIE-1) GN=rplF PE=3 SV=1
Length = 177
Score = 89.0 bits (219), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 48/117 (41%), Positives = 66/117 (56%), Gaps = 7/117 (5%)
Query: 14 ALNHMSNLCDKFTLTWMEAKFLRFLKIVGVGYKARAEAEGRLLYLKLGYVHDVELTVPSA 73
A ++NL + T F + L+I GVGY RA +G+ L L LGY HDV +P
Sbjct: 68 ARAQIANLVEGVT-----KGFEKKLEITGVGY--RAAMQGKKLQLALGYSHDVLYDIPEG 120
Query: 74 VRIFCLKNNVVCCCGLDKHRVHQFAASVRSRKPPDPFKGKGIMCADEVIKKKVGKKK 130
+ I K + G+D +V Q AA +R +PP+P+KGKG+ ADE I +K GKKK
Sbjct: 121 ITITVPKPTEINVVGIDPQKVGQVAAEIRDYRPPEPYKGKGVRYADEFIFRKEGKKK 177
>sp|Q6N4U8|RL6_RHOPA 50S ribosomal protein L6 OS=Rhodopseudomonas palustris (strain ATCC
BAA-98 / CGA009) GN=rplF PE=1 SV=3
Length = 177
Score = 89.0 bits (219), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 48/117 (41%), Positives = 66/117 (56%), Gaps = 7/117 (5%)
Query: 14 ALNHMSNLCDKFTLTWMEAKFLRFLKIVGVGYKARAEAEGRLLYLKLGYVHDVELTVPSA 73
A ++NL + T F + L+I GVGY RA +G+ L L LGY HDV +P
Sbjct: 68 ARAQIANLVEGVT-----KGFEKKLEITGVGY--RAAMQGKKLQLALGYSHDVLYDIPEG 120
Query: 74 VRIFCLKNNVVCCCGLDKHRVHQFAASVRSRKPPDPFKGKGIMCADEVIKKKVGKKK 130
+ I K + G+D +V Q AA +R +PP+P+KGKG+ ADE I +K GKKK
Sbjct: 121 ITITVPKPTEINVVGIDPQKVGQVAAEIRDYRPPEPYKGKGVRYADEFIFRKEGKKK 177
>sp|Q38US6|RL6_LACSS 50S ribosomal protein L6 OS=Lactobacillus sakei subsp. sakei
(strain 23K) GN=rplF PE=3 SV=1
Length = 177
Score = 88.6 bits (218), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 40/95 (42%), Positives = 59/95 (62%), Gaps = 2/95 (2%)
Query: 34 FLRFLKIVGVGYKARAEAEGRLLYLKLGYVHDVELTVPSAVRIFCLKNNVVCCCGLDKHR 93
F + L ++GVGY RA+ +G+ L L +GY H VE+ P V + N + G+ K +
Sbjct: 82 FKKTLDLIGVGY--RAQLKGKTLVLNVGYSHPVEMEAPEGVNVEVPSNTNIIISGISKQK 139
Query: 94 VHQFAASVRSRKPPDPFKGKGIMCADEVIKKKVGK 128
V QFAA +R +PP+P+KGKGI DE +++K GK
Sbjct: 140 VGQFAAEIRDVRPPEPYKGKGIRYTDEHVRRKEGK 174
>sp|A4WVJ3|RL6_RHOS5 50S ribosomal protein L6 OS=Rhodobacter sphaeroides (strain ATCC
17025 / ATH 2.4.3) GN=rplF PE=3 SV=1
Length = 177
Score = 88.6 bits (218), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 46/104 (44%), Positives = 63/104 (60%), Gaps = 2/104 (1%)
Query: 27 LTWMEAKFLRFLKIVGVGYKARAEAEGRLLYLKLGYVHDVELTVPSAVRIFCLKNNVVCC 86
+T + A F + L+I GVGY RA+ G +L L LGY HDV VP+ V + K +
Sbjct: 76 VTGVTAGFKKELEITGVGY--RAQMAGNVLKLSLGYSHDVNFEVPAGVTVTTPKQTEITV 133
Query: 87 CGLDKHRVHQFAASVRSRKPPDPFKGKGIMCADEVIKKKVGKKK 130
G+D+ V Q AA++R + P+P+KGKGI DE I +K GKKK
Sbjct: 134 EGIDQQLVGQVAANIREWRRPEPYKGKGIRYKDEFIFRKEGKKK 177
>sp|A6QCR3|RL6_SULNB 50S ribosomal protein L6 OS=Sulfurovum sp. (strain NBC37-1) GN=rplF
PE=3 SV=1
Length = 178
Score = 88.6 bits (218), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 44/106 (41%), Positives = 64/106 (60%), Gaps = 3/106 (2%)
Query: 27 LTWMEAKFLRFLKIVGVGYKARAEAEGRLLYLKLGYVHDVELTVPSAVRIFCLKNNVVCC 86
+ ++ + + L+I GVGY RA EG+ L L+LG+ HDV +P + I KN ++
Sbjct: 76 MVGLDKGYSKSLEINGVGY--RAAVEGKTLKLQLGFSHDVNFEIPEGLDIKVDKN-IITV 132
Query: 87 CGLDKHRVHQFAASVRSRKPPDPFKGKGIMCADEVIKKKVGKKKSK 132
G DK V Q AA +R+ +PP+P+KGKG+ DEVI +K GK K
Sbjct: 133 SGTDKQAVGQAAAEIRAYRPPEPYKGKGVKYTDEVIIRKAGKAAGK 178
>sp|B2A4F4|RL6_NATTJ 50S ribosomal protein L6 OS=Natranaerobius thermophilus (strain
ATCC BAA-1301 / DSM 18059 / JW/NM-WN-LF) GN=rplF PE=3
SV=1
Length = 178
Score = 88.6 bits (218), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 46/95 (48%), Positives = 60/95 (63%), Gaps = 2/95 (2%)
Query: 34 FLRFLKIVGVGYKARAEAEGRLLYLKLGYVHDVELTVPSAVRIFCLKNNVVCCCGLDKHR 93
F R L+IVGVGY RA+ +G+ L L +GY H V + P V I KNN + G DK
Sbjct: 83 FERHLEIVGVGY--RAQMQGKNLVLNVGYSHPVTIEPPEGVEIEVPKNNQIIVKGTDKEV 140
Query: 94 VHQFAASVRSRKPPDPFKGKGIMCADEVIKKKVGK 128
V Q AA +R+ + P+P+KGKGI A+E I +KVGK
Sbjct: 141 VGQVAARIRAVRKPEPYKGKGIKYAEEQIIRKVGK 175
>sp|A9KJH9|RL6_CLOPH 50S ribosomal protein L6 OS=Clostridium phytofermentans (strain
ATCC 700394 / DSM 18823 / ISDg) GN=rplF PE=3 SV=1
Length = 180
Score = 88.2 bits (217), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 44/106 (41%), Positives = 63/106 (59%), Gaps = 2/106 (1%)
Query: 27 LTWMEAKFLRFLKIVGVGYKARAEAEGRLLYLKLGYVHDVELTVPSAVRIFCLKNNVVCC 86
+T + + + L+I GVGY RA G+ L L LGY H V + P V N +
Sbjct: 77 VTGVTTGYQKVLEINGVGY--RAAKNGKELTLTLGYSHPVVMKDPEGVETILEGQNKITV 134
Query: 87 CGLDKHRVHQFAASVRSRKPPDPFKGKGIMCADEVIKKKVGKKKSK 132
G+DK +V Q+AA +R ++ P+P+KGKGI +DEVI++KVGK K
Sbjct: 135 KGIDKEKVGQYAAEIRDKRRPEPYKGKGIKYSDEVIRRKVGKTGKK 180
>sp|Q89J99|RL6_BRAJA 50S ribosomal protein L6 OS=Bradyrhizobium japonicum (strain USDA
110) GN=rplF PE=3 SV=1
Length = 177
Score = 88.2 bits (217), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 49/117 (41%), Positives = 65/117 (55%), Gaps = 7/117 (5%)
Query: 14 ALNHMSNLCDKFTLTWMEAKFLRFLKIVGVGYKARAEAEGRLLYLKLGYVHDVELTVPSA 73
A ++NL + T F + L+I GVGY RA +G+ L L LGY HDV T+P
Sbjct: 68 ARAQVANLVEGVT-----KGFEKKLEITGVGY--RAAMQGKNLQLALGYSHDVIYTIPEG 120
Query: 74 VRIFCLKNNVVCCCGLDKHRVHQFAASVRSRKPPDPFKGKGIMCADEVIKKKVGKKK 130
+ I K + G D RV Q AA +RS +PP+P+KGKG+ E I +K GKKK
Sbjct: 121 ITITVPKPTEITVTGSDIQRVGQVAAEIRSYRPPEPYKGKGVKYVGEFIFRKEGKKK 177
>sp|Q5LW43|RL6_RUEPO 50S ribosomal protein L6 OS=Ruegeria pomeroyi (strain ATCC 700808 /
DSM 15171 / DSS-3) GN=rplF PE=3 SV=1
Length = 177
Score = 88.2 bits (217), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 44/97 (45%), Positives = 60/97 (61%), Gaps = 2/97 (2%)
Query: 34 FLRFLKIVGVGYKARAEAEGRLLYLKLGYVHDVELTVPSAVRIFCLKNNVVCCCGLDKHR 93
F + L+I GVGY RA A+G L L LGY HDV+ TVP+ V + K + G+D+ +
Sbjct: 83 FKKELEITGVGY--RANAQGNTLKLNLGYSHDVDFTVPAGVTVSTPKQTEIVVEGIDQQQ 140
Query: 94 VHQFAASVRSRKPPDPFKGKGIMCADEVIKKKVGKKK 130
V + AA +R + P+P+KGKGI E I +K GKKK
Sbjct: 141 VGEVAAKIREWRSPEPYKGKGIRYKGEFIFRKDGKKK 177
>sp|B1Z778|RL6_METPB 50S ribosomal protein L6 OS=Methylobacterium populi (strain ATCC
BAA-705 / NCIMB 13946 / BJ001) GN=rplF PE=3 SV=1
Length = 177
Score = 87.8 bits (216), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 43/97 (44%), Positives = 59/97 (60%), Gaps = 2/97 (2%)
Query: 34 FLRFLKIVGVGYKARAEAEGRLLYLKLGYVHDVELTVPSAVRIFCLKNNVVCCCGLDKHR 93
F + L+I GVGY RA G+ L L LGY HD+E +P+ + I K + G+D+ R
Sbjct: 83 FEKKLEITGVGY--RAAMAGKALKLSLGYSHDIEYEIPAGITIVTPKPTEIVVSGIDRQR 140
Query: 94 VHQFAASVRSRKPPDPFKGKGIMCADEVIKKKVGKKK 130
V Q AA +R + P+P+KGKG+ A E I +K GKKK
Sbjct: 141 VGQVAAEIREYRGPEPYKGKGVKYAGEFIFRKEGKKK 177
>sp|A9W4S5|RL6_METEP 50S ribosomal protein L6 OS=Methylobacterium extorquens (strain
PA1) GN=rplF PE=3 SV=1
Length = 177
Score = 87.8 bits (216), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 43/97 (44%), Positives = 59/97 (60%), Gaps = 2/97 (2%)
Query: 34 FLRFLKIVGVGYKARAEAEGRLLYLKLGYVHDVELTVPSAVRIFCLKNNVVCCCGLDKHR 93
F + L+I GVGY RA G+ L L LGY HD+E +P+ + I K + G+D+ R
Sbjct: 83 FEKKLEITGVGY--RAAMAGKALKLSLGYSHDIEYEIPAGITIVTPKPTEIVVSGIDRQR 140
Query: 94 VHQFAASVRSRKPPDPFKGKGIMCADEVIKKKVGKKK 130
V Q AA +R + P+P+KGKG+ A E I +K GKKK
Sbjct: 141 VGQVAAEIREYRGPEPYKGKGVKYAGEFIFRKEGKKK 177
>sp|B7L0T5|RL6_METC4 50S ribosomal protein L6 OS=Methylobacterium chloromethanicum
(strain CM4 / NCIMB 13688) GN=rplF PE=3 SV=1
Length = 177
Score = 87.8 bits (216), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 43/97 (44%), Positives = 59/97 (60%), Gaps = 2/97 (2%)
Query: 34 FLRFLKIVGVGYKARAEAEGRLLYLKLGYVHDVELTVPSAVRIFCLKNNVVCCCGLDKHR 93
F + L+I GVGY RA G+ L L LGY HD+E +P+ + I K + G+D+ R
Sbjct: 83 FEKKLEITGVGY--RAAMAGKALKLSLGYSHDIEYEIPAGITIVTPKPTEIVVSGIDRQR 140
Query: 94 VHQFAASVRSRKPPDPFKGKGIMCADEVIKKKVGKKK 130
V Q AA +R + P+P+KGKG+ A E I +K GKKK
Sbjct: 141 VGQVAAEIREYRGPEPYKGKGVKYAGEFIFRKEGKKK 177
>sp|Q211G3|RL6_RHOPB 50S ribosomal protein L6 OS=Rhodopseudomonas palustris (strain
BisB18) GN=rplF PE=3 SV=1
Length = 177
Score = 87.8 bits (216), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 49/117 (41%), Positives = 65/117 (55%), Gaps = 7/117 (5%)
Query: 14 ALNHMSNLCDKFTLTWMEAKFLRFLKIVGVGYKARAEAEGRLLYLKLGYVHDVELTVPSA 73
A ++NL + T F + L I GVGY RA +G+ L L LGY HDV +P
Sbjct: 68 ARAQVANLLEGVT-----KGFEKKLDITGVGY--RAALQGKKLQLALGYSHDVVYDIPDG 120
Query: 74 VRIFCLKNNVVCCCGLDKHRVHQFAASVRSRKPPDPFKGKGIMCADEVIKKKVGKKK 130
+ I K + G D RV Q AA +RS +PP+P+KGKG+ +DE I +K GKKK
Sbjct: 121 ITITVPKPTEIFISGNDSQRVGQVAAEIRSYRPPEPYKGKGVRYSDEFIFRKEGKKK 177
>sp|Q2W2K6|RL6_MAGSA 50S ribosomal protein L6 OS=Magnetospirillum magneticum (strain
AMB-1 / ATCC 700264) GN=rplF PE=3 SV=1
Length = 177
Score = 87.4 bits (215), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 50/117 (42%), Positives = 67/117 (57%), Gaps = 12/117 (10%)
Query: 15 LNHM-SNLCDKFTLTWMEAKFLRFLKIVGVGYKARAEAEGRLLYLKLGYVHDVELTVPSA 73
LN+M + D FT+ L+I GVGY RA EG+ L L+LGY HD+E +P
Sbjct: 72 LNNMVKGVSDGFTVN---------LEINGVGY--RAAVEGKSLKLQLGYSHDIEYPIPDD 120
Query: 74 VRIFCLKNNVVCCCGLDKHRVHQFAASVRSRKPPDPFKGKGIMCADEVIKKKVGKKK 130
V + C K + G DK +V Q AA +R+ + P+P+KGKGI E I +K GKKK
Sbjct: 121 VTMKCEKPTAISISGRDKRQVGQIAAEIRAFRGPEPYKGKGIKYETETILRKEGKKK 177
>sp|Q2IXP5|RL6_RHOP2 50S ribosomal protein L6 OS=Rhodopseudomonas palustris (strain
HaA2) GN=rplF PE=3 SV=1
Length = 177
Score = 87.4 bits (215), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 47/117 (40%), Positives = 66/117 (56%), Gaps = 7/117 (5%)
Query: 14 ALNHMSNLCDKFTLTWMEAKFLRFLKIVGVGYKARAEAEGRLLYLKLGYVHDVELTVPSA 73
A ++NL + T F + L+I GVGY RA +G+ L L LGY HDV +P
Sbjct: 68 ARAQIANLVEGVT-----KGFEKKLEITGVGY--RAALQGKKLQLALGYSHDVIYDIPEG 120
Query: 74 VRIFCLKNNVVCCCGLDKHRVHQFAASVRSRKPPDPFKGKGIMCADEVIKKKVGKKK 130
+ I K + G+D +V Q AA +R +PP+P+KGKG+ +DE I +K GKKK
Sbjct: 121 ITITVPKPTEINVVGIDSQKVGQVAAEIRDYRPPEPYKGKGVRYSDEFIFRKEGKKK 177
>sp|A7HWS6|RL6_PARL1 50S ribosomal protein L6 OS=Parvibaculum lavamentivorans (strain
DS-1 / DSM 13023 / NCIMB 13966) GN=rplF PE=3 SV=1
Length = 177
Score = 87.0 bits (214), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 47/117 (40%), Positives = 67/117 (57%), Gaps = 2/117 (1%)
Query: 14 ALNHMSNLCDKFTLTWMEAKFLRFLKIVGVGYKARAEAEGRLLYLKLGYVHDVELTVPSA 73
A+ +S K +T + F + L+I GVGY RA +G+ L L LG+ HDV +P
Sbjct: 63 AMWGLSRTLVKNIVTGVTDGFTKTLEINGVGY--RAAIQGKNLQLNLGFSHDVLYPIPEG 120
Query: 74 VRIFCLKNNVVCCCGLDKHRVHQFAASVRSRKPPDPFKGKGIMCADEVIKKKVGKKK 130
+ I C K + G+DK +V Q AA +R + P+P+KGKG+ A E I +K GKKK
Sbjct: 121 IDIKCTKPTEIVITGIDKQKVGQVAAEIRGYRGPEPYKGKGVKYAGEYIFRKEGKKK 177
>sp|Q9Z7S1|RL6_CHLPN 50S ribosomal protein L6 OS=Chlamydia pneumoniae GN=rplF PE=3 SV=1
Length = 183
Score = 87.0 bits (214), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 38/95 (40%), Positives = 64/95 (67%), Gaps = 2/95 (2%)
Query: 34 FLRFLKIVGVGYKARAEAEGRLLYLKLGYVHDVELTVPSAVRIFCLKNNVVCCCGLDKHR 93
F + L+++GVG+ RA +G L L +G H ++ +PS +++ KN ++ GLDK
Sbjct: 84 FEKRLEMIGVGF--RASVQGAFLDLSIGVSHPTKIPIPSTLQVSVEKNTLISVKGLDKQL 141
Query: 94 VHQFAASVRSRKPPDPFKGKGIMCADEVIKKKVGK 128
V +FAAS+R+++PP+P+KGKGI +E +++K GK
Sbjct: 142 VGEFAASIRAKRPPEPYKGKGIRYENEYVRRKAGK 176
>sp|Q1IFV1|RL6_PSEE4 50S ribosomal protein L6 OS=Pseudomonas entomophila (strain L48)
GN=rplF PE=3 SV=1
Length = 177
Score = 86.7 bits (213), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 43/97 (44%), Positives = 62/97 (63%), Gaps = 2/97 (2%)
Query: 34 FLRFLKIVGVGYKARAEAEGRLLYLKLGYVHDVELTVPSAVRIFCLKNNVVCCCGLDKHR 93
F R L++VGVGYKA +A+G +L L LG+ H V+ +P+ + + G+DK
Sbjct: 83 FERKLQLVGVGYKA--QAKGTVLNLALGFSHPVDYELPAGITAETPSQTDILIKGIDKQL 140
Query: 94 VHQFAASVRSRKPPDPFKGKGIMCADEVIKKKVGKKK 130
V Q AA VR +PP+P+KGKG+ ADEV+++K KKK
Sbjct: 141 VGQVAAEVRGFRPPEPYKGKGVRYADEVVRRKEAKKK 177
>sp|Q0VSI8|RL6_ALCBS 50S ribosomal protein L6 OS=Alcanivorax borkumensis (strain SK2 /
ATCC 700651 / DSM 11573) GN=rplF PE=3 SV=1
Length = 177
Score = 86.7 bits (213), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 42/104 (40%), Positives = 66/104 (63%), Gaps = 2/104 (1%)
Query: 27 LTWMEAKFLRFLKIVGVGYKARAEAEGRLLYLKLGYVHDVELTVPSAVRIFCLKNNVVCC 86
+T + F R L+++GVGY RA+A+G++L L LG+ H V +P + + +
Sbjct: 76 VTGVADGFERKLQLLGVGY--RAQAQGKVLNLTLGFSHPVAYQLPEGITVETPSQTEIVI 133
Query: 87 CGLDKHRVHQFAASVRSRKPPDPFKGKGIMCADEVIKKKVGKKK 130
G+DK V Q AA+VR+ +PP+P+KGKG+ ADE +++K KKK
Sbjct: 134 KGIDKQLVGQVAANVRAFRPPEPYKGKGVRYADEQVRRKEAKKK 177
>sp|Q3J5Q7|RL6_RHOS4 50S ribosomal protein L6 OS=Rhodobacter sphaeroides (strain ATCC
17023 / 2.4.1 / NCIB 8253 / DSM 158) GN=rplF PE=3 SV=1
Length = 177
Score = 86.7 bits (213), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 45/104 (43%), Positives = 63/104 (60%), Gaps = 2/104 (1%)
Query: 27 LTWMEAKFLRFLKIVGVGYKARAEAEGRLLYLKLGYVHDVELTVPSAVRIFCLKNNVVCC 86
+T + + F + L+I GVGY RA+ G +L L LGY HDV VP+ V + K +
Sbjct: 76 VTGVTSGFKKELEISGVGY--RAQMAGNVLKLSLGYSHDVNFEVPAGVTVTTPKQTEITV 133
Query: 87 CGLDKHRVHQFAASVRSRKPPDPFKGKGIMCADEVIKKKVGKKK 130
G+D+ V Q AA++R + P+P+KGKGI DE I +K GKKK
Sbjct: 134 EGIDQQLVGQVAANIREWRRPEPYKGKGIRYKDEFIFRKEGKKK 177
>sp|A3PGM6|RL6_RHOS1 50S ribosomal protein L6 OS=Rhodobacter sphaeroides (strain ATCC
17029 / ATH 2.4.9) GN=rplF PE=3 SV=1
Length = 177
Score = 86.7 bits (213), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 45/104 (43%), Positives = 63/104 (60%), Gaps = 2/104 (1%)
Query: 27 LTWMEAKFLRFLKIVGVGYKARAEAEGRLLYLKLGYVHDVELTVPSAVRIFCLKNNVVCC 86
+T + + F + L+I GVGY RA+ G +L L LGY HDV VP+ V + K +
Sbjct: 76 VTGVTSGFKKELEISGVGY--RAQMAGNVLKLSLGYSHDVNFEVPAGVTVTTPKQTEITV 133
Query: 87 CGLDKHRVHQFAASVRSRKPPDPFKGKGIMCADEVIKKKVGKKK 130
G+D+ V Q AA++R + P+P+KGKGI DE I +K GKKK
Sbjct: 134 EGIDQQLVGQVAANIREWRRPEPYKGKGIRYKDEFIFRKEGKKK 177
>sp|Q3K603|RL6_PSEPF 50S ribosomal protein L6 OS=Pseudomonas fluorescens (strain Pf0-1)
GN=rplF PE=3 SV=1
Length = 177
Score = 86.7 bits (213), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 42/97 (43%), Positives = 62/97 (63%), Gaps = 2/97 (2%)
Query: 34 FLRFLKIVGVGYKARAEAEGRLLYLKLGYVHDVELTVPSAVRIFCLKNNVVCCCGLDKHR 93
F R L++VGVGYKA +A+G++L L LG+ H V+ +P + + G+DK
Sbjct: 83 FERKLQLVGVGYKA--QAKGQVLNLALGFSHPVDYELPEGITAETPSQTDILIKGIDKQL 140
Query: 94 VHQFAASVRSRKPPDPFKGKGIMCADEVIKKKVGKKK 130
V Q AA +R +PP+P+KGKG+ ADEV+++K KKK
Sbjct: 141 VGQVAAEIRDFRPPEPYKGKGVRYADEVVRRKEAKKK 177
>sp|Q5QXW0|RL6_IDILO 50S ribosomal protein L6 OS=Idiomarina loihiensis (strain ATCC
BAA-735 / DSM 15497 / L2-TR) GN=rplF PE=3 SV=1
Length = 177
Score = 86.7 bits (213), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 42/97 (43%), Positives = 61/97 (62%), Gaps = 2/97 (2%)
Query: 34 FLRFLKIVGVGYKARAEAEGRLLYLKLGYVHDVELTVPSAVRIFCLKNNVVCCCGLDKHR 93
F R L+++GVGY RA+A+G+ L L LG+ H VE +P + I V G DK
Sbjct: 83 FERKLQLIGVGY--RAQAQGKKLNLTLGFSHPVEFEIPEGITIDTPTQTEVVVKGADKQL 140
Query: 94 VHQFAASVRSRKPPDPFKGKGIMCADEVIKKKVGKKK 130
V Q AA++R+ + P+P+KGKG+ ADE +++K KKK
Sbjct: 141 VGQVAANIRAYRKPEPYKGKGVRYADEQVRRKEAKKK 177
>sp|Q1R0G0|RL6_CHRSD 50S ribosomal protein L6 OS=Chromohalobacter salexigens (strain DSM
3043 / ATCC BAA-138 / NCIMB 13768) GN=rplF PE=3 SV=1
Length = 176
Score = 86.7 bits (213), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 43/104 (41%), Positives = 61/104 (58%), Gaps = 2/104 (1%)
Query: 27 LTWMEAKFLRFLKIVGVGYKARAEAEGRLLYLKLGYVHDVELTVPSAVRIFCLKNNVVCC 86
+T + F + L+I GVGY RA+A G L L LG+ H VE +P V KN +
Sbjct: 75 VTGVSEGFTKSLEINGVGY--RAQASGNTLNLTLGFSHPVEYKLPEGVTAETPKNTTIVL 132
Query: 87 CGLDKHRVHQFAASVRSRKPPDPFKGKGIMCADEVIKKKVGKKK 130
DK ++ Q AA +R+ +PP+P+KGKGI DE +++K KKK
Sbjct: 133 KSADKQQLGQVAAEIRAFRPPEPYKGKGIRYGDEEVRRKEAKKK 176
>sp|Q9HWF0|RL6_PSEAE 50S ribosomal protein L6 OS=Pseudomonas aeruginosa (strain ATCC
15692 / PAO1 / 1C / PRS 101 / LMG 12228) GN=rplF PE=3
SV=1
Length = 177
Score = 86.7 bits (213), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 42/97 (43%), Positives = 63/97 (64%), Gaps = 2/97 (2%)
Query: 34 FLRFLKIVGVGYKARAEAEGRLLYLKLGYVHDVELTVPSAVRIFCLKNNVVCCCGLDKHR 93
F R L++VGVGYKA +A+G++L L LG+ H V+ +P+ + + G+DK
Sbjct: 83 FERKLQLVGVGYKA--QAKGQVLSLSLGFSHPVDYELPAGIVAETPSQTDILIKGIDKQL 140
Query: 94 VHQFAASVRSRKPPDPFKGKGIMCADEVIKKKVGKKK 130
V Q AA +R +PP+P+KGKG+ ADEV+++K KKK
Sbjct: 141 VGQVAAEIRDFRPPEPYKGKGVRYADEVVRRKEAKKK 177
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.324 0.138 0.433
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 50,287,349
Number of Sequences: 539616
Number of extensions: 1864560
Number of successful extensions: 5461
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 764
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 3978
Number of HSP's gapped (non-prelim): 767
length of query: 132
length of database: 191,569,459
effective HSP length: 98
effective length of query: 34
effective length of database: 138,687,091
effective search space: 4715361094
effective search space used: 4715361094
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 55 (25.8 bits)