Query 046142
Match_columns 132
No_of_seqs 118 out of 844
Neff 5.4
Searched_HMMs 46136
Date Fri Mar 29 09:07:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046142.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/046142hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 CHL00140 rpl6 ribosomal protei 100.0 4.9E-46 1.1E-50 288.0 15.1 112 13-131 67-178 (178)
2 TIGR03654 L6_bact ribosomal pr 100.0 7.3E-45 1.6E-49 280.7 15.1 110 13-129 66-175 (175)
3 PRK05498 rplF 50S ribosomal pr 100.0 9E-45 2E-49 280.6 15.5 112 13-131 67-178 (178)
4 COG0097 RplF Ribosomal protein 100.0 3.4E-44 7.4E-49 278.3 13.7 112 13-131 67-178 (178)
5 KOG3254 Mitochondrial/chloropl 100.0 3.4E-41 7.4E-46 262.5 11.3 104 26-131 108-211 (211)
6 PTZ00027 60S ribosomal protein 100.0 1.3E-29 2.9E-34 198.4 13.5 107 14-126 72-184 (190)
7 PRK05518 rpl6p 50S ribosomal p 100.0 2.6E-29 5.7E-34 195.4 13.0 106 14-128 70-179 (180)
8 TIGR03653 arch_L6P archaeal ri 100.0 8.8E-29 1.9E-33 190.8 12.8 101 14-125 64-170 (170)
9 PTZ00179 60S ribosomal protein 100.0 1.9E-28 4.2E-33 191.7 12.6 105 14-126 71-183 (189)
10 PF00347 Ribosomal_L6: Ribosom 98.6 2.1E-09 4.5E-14 71.4 -1.9 71 42-117 2-76 (77)
11 KOG3255 60S ribosomal protein 96.7 0.00023 4.9E-09 55.9 -1.1 87 9-100 68-160 (179)
12 cd02393 PNPase_KH Polynucleoti 67.7 15 0.00032 23.3 4.4 30 72-101 31-60 (61)
13 PRK14434 acylphosphatase; Prov 61.9 3.3 7.1E-05 28.8 0.5 58 38-107 10-68 (92)
14 PRK14420 acylphosphatase; Prov 61.9 1.8 3.8E-05 29.8 -0.8 55 39-107 11-65 (91)
15 PF12646 DUF3783: Domain of un 59.5 13 0.00028 23.6 3.0 29 83-111 3-31 (58)
16 CHL00140 rpl6 ribosomal protei 56.7 12 0.00026 28.9 2.9 22 67-89 8-29 (178)
17 TIGR03654 L6_bact ribosomal pr 55.6 13 0.00028 28.6 3.0 21 68-89 8-28 (175)
18 PRK14443 acylphosphatase; Prov 53.3 4.8 0.0001 28.2 0.2 56 39-107 13-68 (93)
19 PRK14424 acylphosphatase; Prov 52.5 4.3 9.3E-05 28.4 -0.2 55 36-103 13-67 (94)
20 PTZ00179 60S ribosomal protein 52.4 16 0.00034 28.7 3.0 25 67-92 8-32 (189)
21 PRK05498 rplF 50S ribosomal pr 52.3 16 0.00034 28.2 2.9 22 67-89 8-29 (178)
22 COG1072 CoaA Panthothenate kin 51.6 11 0.00024 31.8 2.0 38 53-91 160-197 (283)
23 PRK14449 acylphosphatase; Prov 49.6 3.7 8E-05 28.3 -0.9 53 39-104 12-64 (90)
24 TIGR03653 arch_L6P archaeal ri 48.6 20 0.00043 27.7 3.0 21 68-89 4-24 (170)
25 PTZ00027 60S ribosomal protein 48.5 20 0.00042 28.2 3.0 24 67-91 9-32 (190)
26 PRK14446 acylphosphatase; Prov 48.1 9.9 0.00021 26.3 1.1 52 38-102 10-61 (88)
27 PRK14431 acylphosphatase; Prov 48.0 11 0.00023 26.0 1.3 55 39-107 11-65 (89)
28 PRK05518 rpl6p 50S ribosomal p 47.9 21 0.00045 27.9 3.0 22 67-89 9-30 (180)
29 smart00099 btg1 tob/btg1 famil 46.7 30 0.00066 25.1 3.5 28 89-116 22-58 (108)
30 PRK14436 acylphosphatase; Prov 45.7 5.7 0.00012 27.5 -0.4 53 38-103 12-64 (91)
31 PRK14429 acylphosphatase; Prov 44.1 8 0.00017 26.6 0.1 55 39-107 11-65 (90)
32 PRK14428 acylphosphatase; Prov 41.4 6.5 0.00014 27.7 -0.7 54 37-103 15-68 (97)
33 cd01231 PH_Lnk LNK-family Plec 39.6 70 0.0015 23.3 4.4 37 67-103 67-106 (107)
34 PRK14451 acylphosphatase; Prov 39.3 8.4 0.00018 26.5 -0.4 53 38-103 11-63 (89)
35 PF11280 DUF3081: Protein of u 38.3 25 0.00053 24.2 1.8 25 44-70 38-62 (79)
36 cd02394 vigilin_like_KH K homo 37.9 74 0.0016 19.4 3.9 28 73-101 30-61 (62)
37 PRK14430 acylphosphatase; Prov 37.0 13 0.00028 25.8 0.3 52 39-103 13-64 (92)
38 PRK14433 acylphosphatase; Prov 36.4 10 0.00022 26.0 -0.3 53 38-103 9-61 (87)
39 PRK14423 acylphosphatase; Prov 35.7 13 0.00029 25.6 0.2 52 39-103 14-65 (92)
40 PRK14421 acylphosphatase; Prov 35.7 12 0.00025 26.5 -0.1 57 34-103 8-64 (99)
41 PRK14435 acylphosphatase; Prov 35.5 10 0.00022 26.1 -0.5 53 38-103 10-62 (90)
42 PRK14426 acylphosphatase; Prov 35.1 11 0.00024 26.0 -0.3 57 38-107 12-68 (92)
43 PRK14445 acylphosphatase; Prov 34.3 14 0.0003 25.4 0.1 57 34-103 8-64 (91)
44 PRK14450 acylphosphatase; Prov 34.0 12 0.00026 25.7 -0.3 56 36-103 8-63 (91)
45 PRK14440 acylphosphatase; Prov 33.9 11 0.00024 25.9 -0.4 53 38-103 11-63 (90)
46 PF00013 KH_1: KH domain syndr 33.4 1.1E+02 0.0024 18.4 4.7 28 73-101 30-60 (60)
47 PRK14425 acylphosphatase; Prov 33.1 12 0.00026 26.0 -0.4 53 38-103 14-66 (94)
48 PRK14256 phosphate ABC transpo 31.7 2.4E+02 0.0051 21.9 6.8 53 69-123 18-74 (252)
49 cd06480 ACD_HspB8_like Alpha-c 31.0 60 0.0013 22.5 2.9 20 71-91 28-47 (91)
50 PRK14432 acylphosphatase; Prov 30.7 20 0.00044 24.8 0.4 58 37-107 9-66 (93)
51 PRK03341 arginine repressor; P 30.3 1.5E+02 0.0032 22.9 5.2 58 49-109 103-167 (168)
52 PRK14441 acylphosphatase; Prov 29.7 17 0.00037 25.2 -0.1 56 38-107 13-68 (93)
53 PF14470 bPH_3: Bacterial PH d 27.3 1.7E+02 0.0036 19.0 4.5 31 72-103 66-96 (96)
54 PF05137 PilN: Fimbrial assemb 26.0 1.7E+02 0.0037 18.3 4.2 36 68-103 8-47 (78)
55 PRK14242 phosphate transporter 25.5 3.1E+02 0.0067 21.2 6.4 54 69-123 20-76 (253)
56 KOG1120 Fe-S cluster biosynthe 25.3 1.8E+02 0.0039 22.0 4.7 82 11-108 33-121 (134)
57 PRK14245 phosphate ABC transpo 25.0 2.8E+02 0.0061 21.5 6.1 54 70-124 18-74 (250)
58 cd06472 ACD_ScHsp26_like Alpha 23.9 1.1E+02 0.0024 20.4 3.1 25 66-90 13-41 (92)
59 PF13037 DUF3898: Domain of un 23.5 1.3E+02 0.0027 21.4 3.4 48 27-75 36-83 (91)
60 PF13629 T2SS-T3SS_pil_N: Pilu 23.2 2.2E+02 0.0047 18.3 4.9 15 55-69 4-18 (72)
61 PRK13781 paaB phenylacetate-Co 21.9 33 0.00071 24.5 0.2 15 61-75 79-93 (95)
62 COG4598 HisP ABC-type histidin 21.0 2.5E+02 0.0054 23.1 5.0 58 68-129 19-77 (256)
63 PF00338 Ribosomal_S10: Riboso 20.9 1.3E+02 0.0029 20.2 3.1 23 83-105 2-24 (97)
64 cd02413 40S_S3_KH K homology R 20.7 2.4E+02 0.0052 19.0 4.3 51 59-109 17-68 (81)
65 PRK14444 acylphosphatase; Prov 20.4 19 0.00041 24.9 -1.3 53 38-103 12-64 (92)
66 PF08512 Rtt106: Histone chape 20.2 1.7E+02 0.0037 20.0 3.6 32 73-104 55-88 (95)
67 PRK14438 acylphosphatase; Prov 20.2 26 0.00057 24.0 -0.6 52 39-103 12-63 (91)
No 1
>CHL00140 rpl6 ribosomal protein L6; Validated
Probab=100.00 E-value=4.9e-46 Score=287.98 Aligned_cols=112 Identities=38% Similarity=0.649 Sum_probs=107.4
Q ss_pred chhHHHHhhhhhhhhhccccceEEEEEEEEEEeeEEEeccCCEEEEEeccceeeeeeCCCCcEEEecCCeEEEEEecCHH
Q 046142 13 DALNHMSNLCDKFTLTWMEAKFLRFLKIVGVGYKARAEAEGRLLYLKLGYVHDVELTVPSAVRIFCLKNNVVCCCGLDKH 92 (132)
Q Consensus 13 ~~~~h~~n~~~~~~i~Gv~~gf~~~L~lvGvGYra~i~~~g~~L~l~LGySH~i~~~IP~~V~v~v~~~t~I~l~GiDKq 92 (132)
+--+|++||+ .||++||+++|+++|+||||.+ +|+.|.|+||||||+.++||+||+|+|+++|+|+|+|+|||
T Consensus 67 t~~slI~Nmi-----~GVt~Gf~~~L~lvGvGyr~~~--~g~~l~l~LG~sh~i~~~IP~gv~v~~~~~t~I~i~G~dke 139 (178)
T CHL00140 67 LYRTLINNMV-----IGVSEGFEKKLELQGVGYRAQV--QGKDLILNLGYSHPVKIKIPPGISVEVENNTNITIKGIDKE 139 (178)
T ss_pred HHHHHHHHHH-----hhcccCceEEEEEEEEEEEEEE--eCCcEEEEecCCeeEEEECCCCeEEEeCCCCEEEEEECCHH
Confidence 5568899988 9999999999999999999998 77889999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhccCCCCCCCCCceeecceEEEecCCcccC
Q 046142 93 RVHQFAASVRSRKPPDPFKGKGIMCADEVIKKKVGKKKS 131 (132)
Q Consensus 93 ~VgqfAa~Ir~~r~pepYKGKGI~~~~E~I~~K~gKk~~ 131 (132)
+|+||||+||++|+|||||||||+|+||+|++|+||+++
T Consensus 140 ~Vgq~AA~Ir~~r~pepYKGKGI~y~~e~i~~K~gK~~~ 178 (178)
T CHL00140 140 LVGQFAAKIRSVRPPEPYKGKGIRYKGEVIRRKAGKAGK 178 (178)
T ss_pred HHHHHHHHHhccCCCCCcCCccEeECCEEEEEecccCCC
Confidence 999999999999999999999999999999999999864
No 2
>TIGR03654 L6_bact ribosomal protein L6, bacterial type.
Probab=100.00 E-value=7.3e-45 Score=280.65 Aligned_cols=110 Identities=39% Similarity=0.656 Sum_probs=105.7
Q ss_pred chhHHHHhhhhhhhhhccccceEEEEEEEEEEeeEEEeccCCEEEEEeccceeeeeeCCCCcEEEecCCeEEEEEecCHH
Q 046142 13 DALNHMSNLCDKFTLTWMEAKFLRFLKIVGVGYKARAEAEGRLLYLKLGYVHDVELTVPSAVRIFCLKNNVVCCCGLDKH 92 (132)
Q Consensus 13 ~~~~h~~n~~~~~~i~Gv~~gf~~~L~lvGvGYra~i~~~g~~L~l~LGySH~i~~~IP~~V~v~v~~~t~I~l~GiDKq 92 (132)
+-.+|++||+ .||++||++.|+++|+||||.+ +++.|.|+||||||+.++||++|+|+++++|+|+|+|+|||
T Consensus 66 t~~s~i~Nmi-----~GVt~Gf~~~L~lvGvgyrv~~--~g~~l~l~LG~sh~i~~~Ip~~v~v~~~~~t~I~i~G~dke 138 (175)
T TIGR03654 66 TTRALINNMV-----IGVSEGFEKKLEIVGVGYRAQL--QGKKLNLSLGYSHPVEYEIPEGITVEVPKPTEIVVKGIDKQ 138 (175)
T ss_pred HHHHHHHHHh-----heeccCcEEEEEEEEEEEEEEE--eCCeEEEEecCceeEEEECCCCeEEEeCCCCEEEEEECCHH
Confidence 3467888888 9999999999999999999998 78899999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhccCCCCCCCCCceeecceEEEecCCcc
Q 046142 93 RVHQFAASVRSRKPPDPFKGKGIMCADEVIKKKVGKK 129 (132)
Q Consensus 93 ~VgqfAa~Ir~~r~pepYKGKGI~~~~E~I~~K~gKk 129 (132)
.|+||||+||++|||||||||||+|.||+|++|+||+
T Consensus 139 ~Vgq~AA~Ir~~r~pepYKgkGi~~~~e~I~~K~gKk 175 (175)
T TIGR03654 139 LVGQVAAEIRAFRKPEPYKGKGIRYAGEVVRRKEGKK 175 (175)
T ss_pred HHHHHHHHHhccCCCCCcCCCcEeECCEEEEEeCcCC
Confidence 9999999999999999999999999999999999996
No 3
>PRK05498 rplF 50S ribosomal protein L6; Validated
Probab=100.00 E-value=9e-45 Score=280.62 Aligned_cols=112 Identities=41% Similarity=0.689 Sum_probs=107.2
Q ss_pred chhHHHHhhhhhhhhhccccceEEEEEEEEEEeeEEEeccCCEEEEEeccceeeeeeCCCCcEEEecCCeEEEEEecCHH
Q 046142 13 DALNHMSNLCDKFTLTWMEAKFLRFLKIVGVGYKARAEAEGRLLYLKLGYVHDVELTVPSAVRIFCLKNNVVCCCGLDKH 92 (132)
Q Consensus 13 ~~~~h~~n~~~~~~i~Gv~~gf~~~L~lvGvGYra~i~~~g~~L~l~LGySH~i~~~IP~~V~v~v~~~t~I~l~GiDKq 92 (132)
+-.+|++||+ .||++||+++|+++|+||||.+ +++.|.|+||||||+.++||+||+|+++++|+|+|+|+|+|
T Consensus 67 t~~s~I~Nmi-----~GVt~Gf~~~L~lvGvgyrv~~--~g~~l~l~LG~sh~i~~~Ip~gv~v~~~~~t~I~i~G~dke 139 (178)
T PRK05498 67 TTRALINNMV-----VGVTEGFEKKLEIVGVGYRAQV--KGKKLNLSLGYSHPVEYEIPEGITVEVPKPTEIVVKGIDKQ 139 (178)
T ss_pred HHHHHHHHHh-----hhcCCCeEEEEEEEeEEEEEEE--eCCeEEEEecCCEEEEEECCCCeEEEeCCCCEEEEEECCHH
Confidence 3468888888 9999999999999999999998 78899999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhccCCCCCCCCCceeecceEEEecCCcccC
Q 046142 93 RVHQFAASVRSRKPPDPFKGKGIMCADEVIKKKVGKKKS 131 (132)
Q Consensus 93 ~VgqfAa~Ir~~r~pepYKGKGI~~~~E~I~~K~gKk~~ 131 (132)
+|+||||+||++|+|||||||||+|.||+|++|+||+++
T Consensus 140 ~Vg~~AA~Ir~~r~pe~YkgkGi~~~~e~i~~K~gKk~~ 178 (178)
T PRK05498 140 LVGQVAAEIRSYRPPEPYKGKGIRYAGEVVRRKEGKKKK 178 (178)
T ss_pred HHHHHHHHHhccCCCCCccCCcEeECCEEEEEecccCCC
Confidence 999999999999999999999999999999999999874
No 4
>COG0097 RplF Ribosomal protein L6P/L9E [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=3.4e-44 Score=278.32 Aligned_cols=112 Identities=35% Similarity=0.565 Sum_probs=107.6
Q ss_pred chhHHHHhhhhhhhhhccccceEEEEEEEEEEeeEEEeccCCEEEEEeccceeeeeeCCCCcEEEecCCeEEEEEecCHH
Q 046142 13 DALNHMSNLCDKFTLTWMEAKFLRFLKIVGVGYKARAEAEGRLLYLKLGYVHDVELTVPSAVRIFCLKNNVVCCCGLDKH 92 (132)
Q Consensus 13 ~~~~h~~n~~~~~~i~Gv~~gf~~~L~lvGvGYra~i~~~g~~L~l~LGySH~i~~~IP~~V~v~v~~~t~I~l~GiDKq 92 (132)
+--+|++||+ +||++||+++|+|+|+||||++ +++.|.++||||||+.++||+||+|++++||+|+|+|+|||
T Consensus 67 t~rali~Nmv-----~GVteGf~~kL~ivgvgyra~v--~g~~l~l~LG~shp~~~~ip~gi~v~v~~~t~I~v~GidKe 139 (178)
T COG0097 67 TVRALINNMV-----KGVTEGFEKKLEIVGVGYRAQV--VGGNLELFLGYSHPVVIEIPEGITVEVPGPTEIVVEGIDKE 139 (178)
T ss_pred HHHHHHHHHh-----eecccceEEEEEEEEecceeEE--eccEEEEeecccCCeEEECCCCeEEEecCCCEEEEEcCCHH
Confidence 5678999999 9999999999999999999998 77789999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhccCCCCCCCCCceeecceEEEecCCcccC
Q 046142 93 RVHQFAASVRSRKPPDPFKGKGIMCADEVIKKKVGKKKS 131 (132)
Q Consensus 93 ~VgqfAa~Ir~~r~pepYKGKGI~~~~E~I~~K~gKk~~ 131 (132)
.||||||+||++|+|||||||||||+||+|++|+||+.+
T Consensus 140 ~VGQ~AA~Ir~~r~pepykgKgi~ydge~I~~K~gK~~k 178 (178)
T COG0097 140 LVGQVAANIRAARKPEPYKGKGIRYDGEYIRRKEGKTGK 178 (178)
T ss_pred HHhHHHHHHHhccCCCCCCCcceEEcCEEEEEeccccCC
Confidence 999999999999999999999999999999999999753
No 5
>KOG3254 consensus Mitochondrial/chloroplast ribosomal protein L6 [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=3.4e-41 Score=262.48 Aligned_cols=104 Identities=47% Similarity=0.766 Sum_probs=100.7
Q ss_pred hhhccccceEEEEEEEEEEeeEEEeccCCEEEEEeccceeeeeeCCCCcEEEecCCeEEEEEecCHHHHHHHHHHhhccC
Q 046142 26 TLTWMEAKFLRFLKIVGVGYKARAEAEGRLLYLKLGYVHDVELTVPSAVRIFCLKNNVVCCCGLDKHRVHQFAASVRSRK 105 (132)
Q Consensus 26 ~i~Gv~~gf~~~L~lvGvGYra~i~~~g~~L~l~LGySH~i~~~IP~~V~v~v~~~t~I~l~GiDKq~VgqfAa~Ir~~r 105 (132)
|+.||+.||.+.|+|||+||||++ +|+.|.|+|||||++.+.||++|.|+++.||.++++|+|||+|+||||.+|+||
T Consensus 108 ~v~GVt~g~~k~l~lVGvGYRa~l--egk~l~lklG~S~~v~l~iP~~v~Vk~p~ptsl~~~G~dKq~V~qFAAkvRsfk 185 (211)
T KOG3254|consen 108 NVKGVTMGFLKILKLVGVGYRASL--EGKFLHLKLGYSHDVLLSIPTDVQVKNPTPTSLVLRGIDKQKVTQFAAKVRSFK 185 (211)
T ss_pred cchhhhhhhhheeeEEeeeeEEEe--cCceEEEEeccccceeecCCCceEEecCCCCEEEEecccHHHHHHHHHHHhccC
Confidence 459999999999999999999999 699999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCceeecceEEEecCCcccC
Q 046142 106 PPDPFKGKGIMCADEVIKKKVGKKKS 131 (132)
Q Consensus 106 ~pepYKGKGI~~~~E~I~~K~gKk~~ 131 (132)
||||||||||.|+||.+++|+||..|
T Consensus 186 pPEPYKGKGIyv~dE~vklK~kK~~k 211 (211)
T KOG3254|consen 186 PPEPYKGKGIYVDDEKVKLKAKKSIK 211 (211)
T ss_pred CCCCcCCCceEeccceeeecccccCC
Confidence 99999999999999999999999764
No 6
>PTZ00027 60S ribosomal protein L6; Provisional
Probab=99.97 E-value=1.3e-29 Score=198.40 Aligned_cols=107 Identities=16% Similarity=0.154 Sum_probs=95.3
Q ss_pred hhHHHHhhhhhhhhhccccceEEEEEEEEEEeeEEEe--ccCCEEEE--EeccceeeeeeCCCCcEEEecCC--eEEEEE
Q 046142 14 ALNHMSNLCDKFTLTWMEAKFLRFLKIVGVGYKARAE--AEGRLLYL--KLGYVHDVELTVPSAVRIFCLKN--NVVCCC 87 (132)
Q Consensus 14 ~~~h~~n~~~~~~i~Gv~~gf~~~L~lvGvGYra~i~--~~g~~L~l--~LGySH~i~~~IP~~V~v~v~~~--t~I~l~ 87 (132)
--+|++||+ .||++||+++|+++|+||||+++ .+|+.|.| +||||||+.++||+||+|+++++ |+|+|+
T Consensus 72 ~rslI~NmI-----~GVt~Gf~~~LeivGvGyra~~~v~~~g~~L~l~N~LG~Sh~i~~~iP~gv~v~~~~~~~t~I~i~ 146 (190)
T PTZ00027 72 VCSHIKNMM-----TGVTKKFQYKMRLVYAHFPINSNITDNGKTIEIRNFLGEKRVRTVKMLPGVVVEKSESVKDEIIVT 146 (190)
T ss_pred HHHHHHHHh-----hhhcCCEEEEEEEEEeeeeEEEEEcCCCCEEEEEccCCCceeEEEECCCCeEEEeCCCCCCEEEEE
Confidence 347888888 99999999999999999999954 48899999 89999999999999999999986 899999
Q ss_pred ecCHHHHHHHHHHhhccCCCCCCCCCceeecceEEEecC
Q 046142 88 GLDKHRVHQFAASVRSRKPPDPFKGKGIMCADEVIKKKV 126 (132)
Q Consensus 88 GiDKq~VgqfAa~Ir~~r~pepYKGKGI~~~~E~I~~K~ 126 (132)
|+|||+||||||+||+..+-.. |..-+|.||-+|.-|.
T Consensus 147 G~DKq~Vgq~AA~I~~~~~~~~-~d~r~f~dgiy~~~k~ 184 (190)
T PTZ00027 147 GADLELVSRSAALIHQSTLVRN-KDIRKFLDGIYVSEKG 184 (190)
T ss_pred eCCHHHHHHHHHHHHHHhcccC-CCccEeecCEEEEEee
Confidence 9999999999999999866533 3336899999999886
No 7
>PRK05518 rpl6p 50S ribosomal protein L6P; Reviewed
Probab=99.96 E-value=2.6e-29 Score=195.37 Aligned_cols=106 Identities=21% Similarity=0.194 Sum_probs=94.3
Q ss_pred hhHHHHhhhhhhhhhccccceEEEEEEEEEEe--eEEEeccCCEEEE--EeccceeeeeeCCCCcEEEecCCeEEEEEec
Q 046142 14 ALNHMSNLCDKFTLTWMEAKFLRFLKIVGVGY--KARAEAEGRLLYL--KLGYVHDVELTVPSAVRIFCLKNNVVCCCGL 89 (132)
Q Consensus 14 ~~~h~~n~~~~~~i~Gv~~gf~~~L~lvGvGY--ra~i~~~g~~L~l--~LGySH~i~~~IP~~V~v~v~~~t~I~l~Gi 89 (132)
--+|++||+ .||++||+++|+++|+|| ||++ +|+.|.| +||||||+.++||+||++++++ |+|+|+|+
T Consensus 70 ~rslI~NmI-----~GVt~Gf~~~LelvGvGypira~~--~g~~l~l~n~LG~Sh~v~~~iP~gV~v~~~~-t~I~i~Gi 141 (180)
T PRK05518 70 FASHIKNMI-----KGVTEGFEYKLKIVYSHFPMQVKV--QGNEVVIENFLGEKSPRRAKILGGVKVKVKG-EDVIVEGI 141 (180)
T ss_pred HHHHHHhhh-----eecccceEEEEEEEecCccEEEEE--cCCEEEEEeccccceeEEEeCCCCeEEEecC-CEEEEEeC
Confidence 346788888 999999999999999999 6655 8889999 9999999999999999999999 99999999
Q ss_pred CHHHHHHHHHHhhccCCCCCCCCCceeecceEEEecCCc
Q 046142 90 DKHRVHQFAASVRSRKPPDPFKGKGIMCADEVIKKKVGK 128 (132)
Q Consensus 90 DKq~VgqfAa~Ir~~r~pepYKGKGI~~~~E~I~~K~gK 128 (132)
|||+||||||+||+..+... |..-.|.||-++..|.-|
T Consensus 142 DKq~Vgq~AA~Ir~~~~~~~-kd~r~f~dgiyv~~k~~~ 179 (180)
T PRK05518 142 DKEDVGQTAANIEQATKIKG-FDRRVFQDGIYIVEKEVK 179 (180)
T ss_pred CHHHHHHHHHHHHHhhcccC-CCCCEeecCEEEEEeccC
Confidence 99999999999999987633 444688899999888643
No 8
>TIGR03653 arch_L6P archaeal ribosomal protein L6P. Members of this protein family are the archaeal ribosomal protein L6P. The top-scoring proteins not selected by this model are eukaryotic cytosolic ribosomal protein L9. Bacterial ribosomal protein L6 scores lower and is described by a distinct model.
Probab=99.96 E-value=8.8e-29 Score=190.80 Aligned_cols=101 Identities=23% Similarity=0.300 Sum_probs=87.4
Q ss_pred hhHHHHhhhhhhhhhccccceEEEEEEEEEEe--eEEEeccCCEEEE--EeccceeeeeeCCCCcEEEecCCeEEEEEec
Q 046142 14 ALNHMSNLCDKFTLTWMEAKFLRFLKIVGVGY--KARAEAEGRLLYL--KLGYVHDVELTVPSAVRIFCLKNNVVCCCGL 89 (132)
Q Consensus 14 ~~~h~~n~~~~~~i~Gv~~gf~~~L~lvGvGY--ra~i~~~g~~L~l--~LGySH~i~~~IP~~V~v~v~~~t~I~l~Gi 89 (132)
--+|++||+ .||++||++.|+++|+|| ||++ +|+.|.| +||||||+.++||+||+|+++++ +|+|+|+
T Consensus 64 ~rsli~NmI-----~GVt~Gf~~~LeivGvGy~~ra~~--~g~~L~l~n~LG~Sh~i~~~iP~gI~v~~~~~-~I~i~G~ 135 (170)
T TIGR03653 64 YRSHIKNMI-----KGVTEGFEYKMKVVYSHFPMQVKV--EGNKVVIENFLGEKAPRRAKIPGGVKVKVKGE-EVIVTGI 135 (170)
T ss_pred HHHHHHhhe-----eecccCeEEEEEEEeccccEEEEE--cCCeEEEeeccccceeEEEECCCCeEEEecCC-EEEEEeC
Confidence 346777877 999999999999999999 6665 8888999 89999999999999999999995 9999999
Q ss_pred CHHHHHHHHHHhhccCCCCCCCCCc--eeecceEEEec
Q 046142 90 DKHRVHQFAASVRSRKPPDPFKGKG--IMCADEVIKKK 125 (132)
Q Consensus 90 DKq~VgqfAa~Ir~~r~pepYKGKG--I~~~~E~I~~K 125 (132)
|||+||||||.||+.++. |.|. .|.||-++..|
T Consensus 136 DKq~Vgq~AA~Ir~~~~~---~~~d~r~f~dgiy~~~~ 170 (170)
T TIGR03653 136 DKEDVGQTAANIEQATRI---KGRDPRVFQDGIYIVEK 170 (170)
T ss_pred CHHHHHHHHHHHHHhhcc---cCCCccEeecCEEEEeC
Confidence 999999999999999776 3333 56677776543
No 9
>PTZ00179 60S ribosomal protein L9; Provisional
Probab=99.96 E-value=1.9e-28 Score=191.71 Aligned_cols=105 Identities=18% Similarity=0.167 Sum_probs=93.3
Q ss_pred hhHHHHhhhhhhhhhccccceEEEEEEEEEEe--eEEEeccCCEEEE--EeccceeeeeeCCCCcEEEecCC----eEEE
Q 046142 14 ALNHMSNLCDKFTLTWMEAKFLRFLKIVGVGY--KARAEAEGRLLYL--KLGYVHDVELTVPSAVRIFCLKN----NVVC 85 (132)
Q Consensus 14 ~~~h~~n~~~~~~i~Gv~~gf~~~L~lvGvGY--ra~i~~~g~~L~l--~LGySH~i~~~IP~~V~v~v~~~----t~I~ 85 (132)
--+|++||+ .||++||+++|+++|+|| ||++ +|+.|.| +||||||+.++||+||+|++++| ++|+
T Consensus 71 ~rslI~NMI-----~GVt~GF~k~L~ivgvgyp~ra~v--~g~~l~l~N~LG~sh~~~~~ip~gv~v~~~~~~~~k~~i~ 143 (189)
T PTZ00179 71 ALSHVRNMI-----TGVTKGFRFKVRFAYAHFPISVSV--ENQLVEIRNFLGEKRVRRQVVADTVKVYRTDPSKVKDELV 143 (189)
T ss_pred HHHHHHHHh-----hhhcCCEEEEEEEEEeCcceEEEE--cCCEEEEEecCCCCccEEEECCCCEEEEecCCcccCCEEE
Confidence 457888888 999999999999999999 7776 8999999 89999999999999999999998 8999
Q ss_pred EEecCHHHHHHHHHHhhccCCCCCCCCCceeecceEEEecC
Q 046142 86 CCGLDKHRVHQFAASVRSRKPPDPFKGKGIMCADEVIKKKV 126 (132)
Q Consensus 86 l~GiDKq~VgqfAa~Ir~~r~pepYKGKGI~~~~E~I~~K~ 126 (132)
|+|+|||.||||||+|++....-- |..-+|.||-|+..|.
T Consensus 144 i~G~DKq~Vgq~AA~i~~~~~~~~-~d~r~f~dgiy~~~k~ 183 (189)
T PTZ00179 144 LEGNDLEQVSREAAVMHQLCLVKK-KDIRKFLDGIYVQTKT 183 (189)
T ss_pred EEeCCHHHHHHHHHHHHHhhcccC-CCccEeecCEEEEEee
Confidence 999999999999999999866521 2225788999999886
No 10
>PF00347 Ribosomal_L6: Ribosomal protein L6; InterPro: IPR020040 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. L6 is a protein from the large (50S) subunit. In Escherichia coli, it is located in the aminoacyl-tRNA binding site of the peptidyltransferase centre, and is known to bind directly to 23S rRNA. It belongs to a family of ribosomal proteins, including L6 from bacteria, cyanelles (structures that perform similar functions to chloroplasts, but have structural and biochemical characteristics of Cyanobacteria) and mitochondria; and L9 from mammals, Drosophila, plants and yeast. L6 contains two domains with almost identical folds, suggesting that is was derived by the duplication of an ancient RNA-binding protein gene. Analysis reveals several sites on the protein surface where interactions with other ribosome components may occur, the N terminus being involved in protein-protein interactions and the C terminus containing possible RNA-binding sites []. This entry represents the alpha-beta domain found duplicated in ribosomal L6 proteins. This domain consists of two beta-sheets and one alpha-helix packed around single core [].; GO: 0003735 structural constituent of ribosome, 0019843 rRNA binding, 0006412 translation, 0005840 ribosome; PDB: 2HGJ_H 2HGQ_H 2HGU_H 1S1I_H 3O5H_I 3O58_I 3J16_F 3IZS_F 2V47_H 2WDJ_H ....
Probab=98.64 E-value=2.1e-09 Score=71.45 Aligned_cols=71 Identities=21% Similarity=0.211 Sum_probs=61.7
Q ss_pred EEEeeEEEeccCCEEEEEeccceeeeeeCCCCcEEEec----CCeEEEEEecCHHHHHHHHHHhhccCCCCCCCCCceee
Q 046142 42 GVGYKARAEAEGRLLYLKLGYVHDVELTVPSAVRIFCL----KNNVVCCCGLDKHRVHQFAASVRSRKPPDPFKGKGIMC 117 (132)
Q Consensus 42 GvGYra~i~~~g~~L~l~LGySH~i~~~IP~~V~v~v~----~~t~I~l~GiDKq~VgqfAa~Ir~~r~pepYKGKGI~~ 117 (132)
+.|+++.+ ++ .+....|++|...+++|++|++++. +.+...+++.|++.. |||.++.+|.+.+|+++||.+
T Consensus 2 P~gV~v~~--~~-~~i~v~G~~g~l~~~~~~~v~v~~~~~~~~~~~~~~~~~~k~~~--~~a~~gt~rsli~n~i~GV~~ 76 (77)
T PF00347_consen 2 PEGVKVTI--KG-NIITVKGPKGELSRPIPPGVKVEIKVEDNKITVSVLSGNKKQKA--FAAMIGTYRSLINNMIKGVTE 76 (77)
T ss_dssp STTCEEEE--ET-TEEEEESSSSEEEEEETTTEEEEEEEETTSEEEEEEEESHHHHH--HHHHHHHHHHHHHHHHHHHHT
T ss_pred CCcEEEEE--eC-cEEEEECCCEeEEEECCCCeeEEEEcCCCceEEEECcccHhHhh--hHHhhccccccccCceeEECC
Confidence 45788887 44 6888999999999999999999976 556778899999999 999999999999999999753
No 11
>KOG3255 consensus 60S ribosomal protein L9 [Translation, ribosomal structure and biogenesis]
Probab=96.74 E-value=0.00023 Score=55.88 Aligned_cols=87 Identities=17% Similarity=0.116 Sum_probs=73.6
Q ss_pred ccccchhHHHHhhhhhhhhhccccceEEEEEEEEEEeeEEEeccCC---EEEE-EeccceeeeeeCCCCcEEEec--CCe
Q 046142 9 ICNEDALNHMSNLCDKFTLTWMEAKFLRFLKIVGVGYKARAEAEGR---LLYL-KLGYVHDVELTVPSAVRIFCL--KNN 82 (132)
Q Consensus 9 ~~~~~~~~h~~n~~~~~~i~Gv~~gf~~~L~lvGvGYra~i~~~g~---~L~l-~LGySH~i~~~IP~~V~v~v~--~~t 82 (132)
-|=.+..+|+.||+ +|++.||.+++..+.-+|.+..+.+.+ ...+ +||.+.+..++..+|+..... -+.
T Consensus 68 a~l~t~~s~ien~i-----~gvt~~~i~k~~av~a~f~in~~~~~~~~s~~i~n~l~~k~~~~~~~~~Gv~~~~~~~~~~ 142 (179)
T KOG3255|consen 68 ACLRTVVSHIENCI-----KGVTIGFIYKMRAVYAHFPINTVIQENGKSEEIRNFLGEKLVRRVEMRPGVTIVRSSKVKD 142 (179)
T ss_pred HHHHHHHHHHHHHH-----hcchHHHHHHhhhHHhhccccceecCCCcchhhhhhhhhhccceEecCCCeEEeeehhcch
Confidence 45568889999999 999999999999999999988765554 3333 999999999999999976553 456
Q ss_pred EEEEEecCHHHHHHHHHH
Q 046142 83 VVCCCGLDKHRVHQFAAS 100 (132)
Q Consensus 83 ~I~l~GiDKq~VgqfAa~ 100 (132)
.+.+.|.|-+.|.|-||.
T Consensus 143 ~i~~~~~~~~~vs~~~a~ 160 (179)
T KOG3255|consen 143 EIVLEGNDLELVSQSAAL 160 (179)
T ss_pred hheecccchhhhhhHhHh
Confidence 899999999999998777
No 12
>cd02393 PNPase_KH Polynucleotide phosphorylase (PNPase) K homology RNA-binding domain (KH). PNPase is a polyribonucleotide nucleotidyl transferase that degrades mRNA in prokaryotes and plant chloroplasts. The C-terminal region of PNPase contains domains homologous to those in other RNA binding proteins: a KH domain and an S1 domain. KH domains bind single-stranded RNA and are found in a wide variety of proteins including ribosomal proteins, transcription factors and post-transcriptional modifiers of mRNA.
Probab=67.72 E-value=15 Score=23.28 Aligned_cols=30 Identities=17% Similarity=0.178 Sum_probs=23.5
Q ss_pred CCcEEEecCCeEEEEEecCHHHHHHHHHHh
Q 046142 72 SAVRIFCLKNNVVCCCGLDKHRVHQFAASV 101 (132)
Q Consensus 72 ~~V~v~v~~~t~I~l~GiDKq~VgqfAa~I 101 (132)
.|+++.+++...+.++|.|++.+.+-.+.|
T Consensus 31 tg~~I~i~~~g~v~I~G~~~~~v~~A~~~I 60 (61)
T cd02393 31 TGVKIDIEDDGTVYIAASDKEAAEKAKKMI 60 (61)
T ss_pred HCCEEEeCCCCEEEEEeCCHHHHHHHHHHh
Confidence 466777777789999999999988766655
No 13
>PRK14434 acylphosphatase; Provisional
Probab=61.93 E-value=3.3 Score=28.82 Aligned_cols=58 Identities=14% Similarity=0.190 Sum_probs=34.8
Q ss_pred EEEEEEEeeEEEeccCCEEE-EEeccceeeeeeCCCCcEEEecCCeEEEEEecCHHHHHHHHHHhhccCCC
Q 046142 38 LKIVGVGYKARAEAEGRLLY-LKLGYVHDVELTVPSAVRIFCLKNNVVCCCGLDKHRVHQFAASVRSRKPP 107 (132)
Q Consensus 38 L~lvGvGYra~i~~~g~~L~-l~LGySH~i~~~IP~~V~v~v~~~t~I~l~GiDKq~VgqfAa~Ir~~r~p 107 (132)
=.+-|||||..+......|- |. ||- -..|+| .-+|.++|.+.+.|.+|...|++=.||
T Consensus 10 G~VQGVGFR~fv~~~A~~lg~l~-G~V----~N~~dG-------sVei~~qG~~~~~l~~f~~~l~~g~pp 68 (92)
T PRK14434 10 GRVQGVGFRYSVYSLALEIGDIY-GRV----WNNDDG-------TVEILAQSDDSAKLAKFIQEIRKGPSK 68 (92)
T ss_pred EeecceeEhHHHHHHHHHcCCcE-EEE----EECCCC-------CEEEEEEcCCHHHHHHHHHHHhcCCCC
Confidence 35679999998732222222 11 221 122332 236778887778899999999985444
No 14
>PRK14420 acylphosphatase; Provisional
Probab=61.88 E-value=1.8 Score=29.79 Aligned_cols=55 Identities=16% Similarity=0.212 Sum_probs=32.4
Q ss_pred EEEEEEeeEEEeccCCEEEEEeccceeeeeeCCCCcEEEecCCeEEEEEecCHHHHHHHHHHhhccCCC
Q 046142 39 KIVGVGYKARAEAEGRLLYLKLGYVHDVELTVPSAVRIFCLKNNVVCCCGLDKHRVHQFAASVRSRKPP 107 (132)
Q Consensus 39 ~lvGvGYra~i~~~g~~L~l~LGySH~i~~~IP~~V~v~v~~~t~I~l~GiDKq~VgqfAa~Ir~~r~p 107 (132)
.+-|||||..+... ...+|-+=-+ -..|+| .-+|.+.|.+ +.|.+|...|++- ||
T Consensus 11 ~VQGVGFR~~~~~~----A~~~gl~G~V-~N~~dG-------~Vei~~qG~~-~~i~~f~~~l~~~-p~ 65 (91)
T PRK14420 11 RVQGVGFRYFVQME----ADKRKLTGWV-KNRDDG-------TVEIEAEGPE-EALQLFLDAIEKG-SP 65 (91)
T ss_pred eeCCcCChHHHHHH----HHHcCCEEEE-EECCCC-------cEEEEEEECH-HHHHHHHHHHHhC-CC
Confidence 56689999986222 2222222111 122222 2367788854 8899999999975 54
No 15
>PF12646 DUF3783: Domain of unknown function (DUF3783); InterPro: IPR016621 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=59.55 E-value=13 Score=23.56 Aligned_cols=29 Identities=21% Similarity=0.434 Sum_probs=26.2
Q ss_pred EEEEEecCHHHHHHHHHHhhccCCCCCCC
Q 046142 83 VVCCCGLDKHRVHQFAASVRSRKPPDPFK 111 (132)
Q Consensus 83 ~I~l~GiDKq~VgqfAa~Ir~~r~pepYK 111 (132)
-+++.|.+.+.|.+|-..+|+..-+.|||
T Consensus 3 ~ll~~g~~~~el~~~l~~~r~~~~~~~~k 31 (58)
T PF12646_consen 3 FLLFSGFSGEELDKFLDALRKAGIPIPLK 31 (58)
T ss_pred EEEECCCCHHHHHHHHHHHHHcCCCcceE
Confidence 57899999999999999999997788876
No 16
>CHL00140 rpl6 ribosomal protein L6; Validated
Probab=56.67 E-value=12 Score=28.93 Aligned_cols=22 Identities=14% Similarity=0.279 Sum_probs=14.2
Q ss_pred eeeCCCCcEEEecCCeEEEEEec
Q 046142 67 ELTVPSAVRIFCLKNNVVCCCGL 89 (132)
Q Consensus 67 ~~~IP~~V~v~v~~~t~I~l~Gi 89 (132)
.++||++|+|++.+ +.|+++|.
T Consensus 8 ~I~IP~~V~v~i~~-~~v~vkGp 29 (178)
T CHL00140 8 PIKIPDNVNVSIDD-QIIKVKGP 29 (178)
T ss_pred eeecCCCCEEEEEC-CEEEEECC
Confidence 36778888887755 35555554
No 17
>TIGR03654 L6_bact ribosomal protein L6, bacterial type.
Probab=55.61 E-value=13 Score=28.63 Aligned_cols=21 Identities=29% Similarity=0.411 Sum_probs=13.3
Q ss_pred eeCCCCcEEEecCCeEEEEEec
Q 046142 68 LTVPSAVRIFCLKNNVVCCCGL 89 (132)
Q Consensus 68 ~~IP~~V~v~v~~~t~I~l~Gi 89 (132)
+.||++|+|++.+ +.++++|.
T Consensus 8 I~IP~~V~v~~~~-~~v~v~Gp 28 (175)
T TIGR03654 8 IAIPAGVEVTIDG-NVVTVKGP 28 (175)
T ss_pred eecCCCcEEEEeC-CEEEEEcC
Confidence 5677777777654 35555554
No 18
>PRK14443 acylphosphatase; Provisional
Probab=53.33 E-value=4.8 Score=28.22 Aligned_cols=56 Identities=13% Similarity=0.309 Sum_probs=33.0
Q ss_pred EEEEEEeeEEEeccCCEEEEEeccceeeeeeCCCCcEEEecCCeEEEEEecCHHHHHHHHHHhhccCCC
Q 046142 39 KIVGVGYKARAEAEGRLLYLKLGYVHDVELTVPSAVRIFCLKNNVVCCCGLDKHRVHQFAASVRSRKPP 107 (132)
Q Consensus 39 ~lvGvGYra~i~~~g~~L~l~LGySH~i~~~IP~~V~v~v~~~t~I~l~GiDKq~VgqfAa~Ir~~r~p 107 (132)
.+-|||||..+......+-|. ||- -.+|+| .-+|.+.| +.+.|.+|.+.|+.-.||
T Consensus 13 ~VQGVGFR~~~~~~A~~~gl~-G~V----~N~~dG-------~Vei~~qG-~~~~l~~f~~~l~~g~p~ 68 (93)
T PRK14443 13 FVQGVGFRYTTKHVAYKYDIS-GTV----KNLDDG-------SVEIHAIA-EEENLNKFIDAIKKGPSP 68 (93)
T ss_pred eeCCccCcHHHHHHHHHcCCE-EEE----EECCCC-------EEEEEEEC-CHHHHHHHHHHHhcCCCC
Confidence 567899999873332233222 332 233443 12455665 556699999999886444
No 19
>PRK14424 acylphosphatase; Provisional
Probab=52.55 E-value=4.3 Score=28.44 Aligned_cols=55 Identities=16% Similarity=0.123 Sum_probs=35.4
Q ss_pred EEEEEEEEEeeEEEeccCCEEEEEeccceeeeeeCCCCcEEEecCCeEEEEEecCHHHHHHHHHHhhc
Q 046142 36 RFLKIVGVGYKARAEAEGRLLYLKLGYVHDVELTVPSAVRIFCLKNNVVCCCGLDKHRVHQFAASVRS 103 (132)
Q Consensus 36 ~~L~lvGvGYra~i~~~g~~L~l~LGySH~i~~~IP~~V~v~v~~~t~I~l~GiDKq~VgqfAa~Ir~ 103 (132)
..=.+-|||||..+.. +...+|-+-.+. .+|+| .-.|.+.|.+ +.|.+|.+.|+.
T Consensus 13 v~G~VQGVGFR~~v~~----~A~~~gl~G~V~-N~~dG-------~Vei~~qG~~-~~v~~f~~~l~~ 67 (94)
T PRK14424 13 VRGVVQGVGFRHATVR----EAHALGLRGWVA-NLEDG-------TVEAMIQGPA-AQIDRMLAWLRH 67 (94)
T ss_pred EEEeecCCchHHHHHH----HHHHcCCeEEEE-ECCCC-------CEEEEEEECH-HHHHHHHHHHHh
Confidence 3346678999998732 333445444443 56665 2356677755 559999999985
No 20
>PTZ00179 60S ribosomal protein L9; Provisional
Probab=52.37 E-value=16 Score=28.74 Aligned_cols=25 Identities=20% Similarity=0.322 Sum_probs=18.5
Q ss_pred eeeCCCCcEEEecCCeEEEEEecCHH
Q 046142 67 ELTVPSAVRIFCLKNNVVCCCGLDKH 92 (132)
Q Consensus 67 ~~~IP~~V~v~v~~~t~I~l~GiDKq 92 (132)
.+.||++|+|++.+ +.|+++|.-=+
T Consensus 8 pI~IP~~V~V~i~~-~~ItVkGpkG~ 32 (189)
T PTZ00179 8 TITIPEDVTVSVKD-RIVTVKGKRGT 32 (189)
T ss_pred cEeCCCCCEEEEeC-CEEEEECCCcE
Confidence 46789999998877 46777776543
No 21
>PRK05498 rplF 50S ribosomal protein L6; Validated
Probab=52.30 E-value=16 Score=28.23 Aligned_cols=22 Identities=27% Similarity=0.400 Sum_probs=14.9
Q ss_pred eeeCCCCcEEEecCCeEEEEEec
Q 046142 67 ELTVPSAVRIFCLKNNVVCCCGL 89 (132)
Q Consensus 67 ~~~IP~~V~v~v~~~t~I~l~Gi 89 (132)
.++||++|+|++.+ +.|+++|.
T Consensus 8 ~I~IP~~V~v~~~~-~~v~vkGp 29 (178)
T PRK05498 8 PIAIPAGVEVTING-NVVTVKGP 29 (178)
T ss_pred ceecCCCCEEEEEC-CEEEEECC
Confidence 36778888887765 45666664
No 22
>COG1072 CoaA Panthothenate kinase [Coenzyme metabolism]
Probab=51.57 E-value=11 Score=31.78 Aligned_cols=38 Identities=18% Similarity=0.240 Sum_probs=30.6
Q ss_pred CCEEEEEeccceeeeeeCCCCcEEEecCCeEEEEEecCH
Q 046142 53 GRLLYLKLGYVHDVELTVPSAVRIFCLKNNVVCCCGLDK 91 (132)
Q Consensus 53 g~~L~l~LGySH~i~~~IP~~V~v~v~~~t~I~l~GiDK 91 (132)
|..-+.-=.|||.++-.+|....| ++.|..++++|++-
T Consensus 160 ~~~~v~aPvysh~~yD~vpd~~~v-~~~pdIlI~EG~nv 197 (283)
T COG1072 160 GKPDVFAPVYSHLIYDPVPDAFQV-VPQPDILIVEGNNV 197 (283)
T ss_pred CCCccccccccccccccCCCceee-cCCCCEEEEechhh
Confidence 334455668999999999999888 57778999999874
No 23
>PRK14449 acylphosphatase; Provisional
Probab=49.57 E-value=3.7 Score=28.26 Aligned_cols=53 Identities=15% Similarity=0.260 Sum_probs=32.2
Q ss_pred EEEEEEeeEEEeccCCEEEEEeccceeeeeeCCCCcEEEecCCeEEEEEecCHHHHHHHHHHhhcc
Q 046142 39 KIVGVGYKARAEAEGRLLYLKLGYVHDVELTVPSAVRIFCLKNNVVCCCGLDKHRVHQFAASVRSR 104 (132)
Q Consensus 39 ~lvGvGYra~i~~~g~~L~l~LGySH~i~~~IP~~V~v~v~~~t~I~l~GiDKq~VgqfAa~Ir~~ 104 (132)
.+-|||||..+... ...||-+=- .-.+++| .-+|.++| |.+.|.+|.+.|++-
T Consensus 12 ~VQGVGFR~fv~~~----A~~lgl~G~-V~N~~dG-------~Vei~~~G-~~~~v~~f~~~l~~~ 64 (90)
T PRK14449 12 HVQGVGLRYSVYQK----AVSLGITGY-AENLYDG-------SVEVVAEG-DEENIKELINFIKTG 64 (90)
T ss_pred eecCcChHHHHHHH----HHHcCCEEE-EEECCCC-------eEEEEEEe-CHHHHHHHHHHHhhC
Confidence 46789999987322 223332222 1244444 23667787 557799999999873
No 24
>TIGR03653 arch_L6P archaeal ribosomal protein L6P. Members of this protein family are the archaeal ribosomal protein L6P. The top-scoring proteins not selected by this model are eukaryotic cytosolic ribosomal protein L9. Bacterial ribosomal protein L6 scores lower and is described by a distinct model.
Probab=48.59 E-value=20 Score=27.68 Aligned_cols=21 Identities=24% Similarity=0.390 Sum_probs=10.7
Q ss_pred eeCCCCcEEEecCCeEEEEEec
Q 046142 68 LTVPSAVRIFCLKNNVVCCCGL 89 (132)
Q Consensus 68 ~~IP~~V~v~v~~~t~I~l~Gi 89 (132)
+.||++|+|++.+ +.|+++|.
T Consensus 4 I~IP~~V~v~i~~-~~i~vkGp 24 (170)
T TIGR03653 4 IEIPEGVSVTIEG-NIVTVKGP 24 (170)
T ss_pred EecCCCCEEEEeC-CEEEEECC
Confidence 3556666665544 23444443
No 25
>PTZ00027 60S ribosomal protein L6; Provisional
Probab=48.52 E-value=20 Score=28.25 Aligned_cols=24 Identities=17% Similarity=0.264 Sum_probs=18.4
Q ss_pred eeeCCCCcEEEecCCeEEEEEecCH
Q 046142 67 ELTVPSAVRIFCLKNNVVCCCGLDK 91 (132)
Q Consensus 67 ~~~IP~~V~v~v~~~t~I~l~GiDK 91 (132)
.+.||++|+|++.+ +.|+++|.-=
T Consensus 9 ~I~IP~~V~V~i~~-~~v~VkGp~G 32 (190)
T PTZ00027 9 KIRIPEGVTVTVKS-RKVTVTGKYG 32 (190)
T ss_pred CEecCCCCEEEEEC-CEEEEECCCc
Confidence 36789999998877 4788887653
No 26
>PRK14446 acylphosphatase; Provisional
Probab=48.12 E-value=9.9 Score=26.28 Aligned_cols=52 Identities=19% Similarity=0.215 Sum_probs=31.1
Q ss_pred EEEEEEEeeEEEeccCCEEEEEeccceeeeeeCCCCcEEEecCCeEEEEEecCHHHHHHHHHHhh
Q 046142 38 LKIVGVGYKARAEAEGRLLYLKLGYVHDVELTVPSAVRIFCLKNNVVCCCGLDKHRVHQFAASVR 102 (132)
Q Consensus 38 L~lvGvGYra~i~~~g~~L~l~LGySH~i~~~IP~~V~v~v~~~t~I~l~GiDKq~VgqfAa~Ir 102 (132)
=.+-|||||..+.. +.-.||-+=-+ -..|+| .-+|.++| |.+.|.+|.+.++
T Consensus 10 G~VQGVGFR~fv~~----~A~~lgl~G~V-~N~~dG-------sVei~~qG-~~~~l~~f~~~l~ 61 (88)
T PRK14446 10 GVVQGVWYRASTRE----RAVALGLVGHA-RNQADG-------SVEVVAAG-SAAALEALEAWLW 61 (88)
T ss_pred EecCCeeEhHHHHH----HHeeCCeEEEE-EECCCC-------CEEEEEEe-CHHHHHHHHHHHh
Confidence 35678999998732 22233322111 133333 23566777 5678999999998
No 27
>PRK14431 acylphosphatase; Provisional
Probab=48.02 E-value=11 Score=26.05 Aligned_cols=55 Identities=22% Similarity=0.344 Sum_probs=33.6
Q ss_pred EEEEEEeeEEEeccCCEEEEEeccceeeeeeCCCCcEEEecCCeEEEEEecCHHHHHHHHHHhhccCCC
Q 046142 39 KIVGVGYKARAEAEGRLLYLKLGYVHDVELTVPSAVRIFCLKNNVVCCCGLDKHRVHQFAASVRSRKPP 107 (132)
Q Consensus 39 ~lvGvGYra~i~~~g~~L~l~LGySH~i~~~IP~~V~v~v~~~t~I~l~GiDKq~VgqfAa~Ir~~r~p 107 (132)
.+-|||||..+...-..+-|. ||- -..|++| .+.++| +.+.|-.|.+.++.=.||
T Consensus 11 ~VQGVGFR~~~~~~A~~~gl~-G~V----~N~~dgV--------ei~~qG-~~~~l~~f~~~l~~g~p~ 65 (89)
T PRK14431 11 RVQGVGFRYFTQRIAMNYNIV-GTV----QNVDDYV--------EIYAQG-DDADLERFIQGVIEGASP 65 (89)
T ss_pred ecCCeeEhHHHHHHHhhcCCE-EEE----EECCCcE--------EEEEEc-CHHHHHHHHHHHhcCCCC
Confidence 567899999873322223222 333 2335543 345666 677899999999984444
No 28
>PRK05518 rpl6p 50S ribosomal protein L6P; Reviewed
Probab=47.85 E-value=21 Score=27.88 Aligned_cols=22 Identities=27% Similarity=0.303 Sum_probs=14.5
Q ss_pred eeeCCCCcEEEecCCeEEEEEec
Q 046142 67 ELTVPSAVRIFCLKNNVVCCCGL 89 (132)
Q Consensus 67 ~~~IP~~V~v~v~~~t~I~l~Gi 89 (132)
.+.||++|+|++.+ +.++++|.
T Consensus 9 pI~IP~~V~v~i~~-~~v~VkGp 30 (180)
T PRK05518 9 EIEIPEGVTVEIEG-LVVTVKGP 30 (180)
T ss_pred cEEcCCCCEEEEEC-CEEEEECC
Confidence 35778888877765 35666654
No 29
>smart00099 btg1 tob/btg1 family. The tob/btg1 is a family of proteins that inhibit cell proliferation.
Probab=46.72 E-value=30 Score=25.11 Aligned_cols=28 Identities=39% Similarity=0.693 Sum_probs=24.2
Q ss_pred cCHHHHHHHHHHhh---------ccCCCCCCCCCcee
Q 046142 89 LDKHRVHQFAASVR---------SRKPPDPFKGKGIM 116 (132)
Q Consensus 89 iDKq~VgqfAa~Ir---------~~r~pepYKGKGI~ 116 (132)
++++.|..||+.+. .|-|.+|.||-|-|
T Consensus 22 l~~~~v~~F~~~L~~~L~~~y~~HWyP~~P~kGqayR 58 (108)
T smart00099 22 LSKRRVEIFAEKLTRLLKEKYKNHWYPEKPYKGSGFR 58 (108)
T ss_pred CCHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCcceE
Confidence 68899999999987 46999999999943
No 30
>PRK14436 acylphosphatase; Provisional
Probab=45.69 E-value=5.7 Score=27.48 Aligned_cols=53 Identities=25% Similarity=0.310 Sum_probs=30.7
Q ss_pred EEEEEEEeeEEEeccCCEEEEEeccceeeeeeCCCCcEEEecCCeEEEEEecCHHHHHHHHHHhhc
Q 046142 38 LKIVGVGYKARAEAEGRLLYLKLGYVHDVELTVPSAVRIFCLKNNVVCCCGLDKHRVHQFAASVRS 103 (132)
Q Consensus 38 L~lvGvGYra~i~~~g~~L~l~LGySH~i~~~IP~~V~v~v~~~t~I~l~GiDKq~VgqfAa~Ir~ 103 (132)
=.+-|||||..+... ...+|.+=.+ -..++| .-+|.+.| +.+.|.+|-+.++.
T Consensus 12 G~VQGVGFR~~v~~~----A~~l~l~G~V-~N~~dG-------~Vei~~qG-~~~~i~~f~~~l~~ 64 (91)
T PRK14436 12 GRVQGVGFRWSMQRE----ARKLGVNGWV-RNLPDG-------SVEAVLEG-DEERVEALIGWAHQ 64 (91)
T ss_pred EeeCCcCcHHHHHHH----HHHcCCEEEE-EECCCC-------cEEEEEEc-CHHHHHHHHHHHhh
Confidence 356789999987322 2222222111 122332 23566777 56779999999984
No 31
>PRK14429 acylphosphatase; Provisional
Probab=44.12 E-value=8 Score=26.56 Aligned_cols=55 Identities=20% Similarity=0.226 Sum_probs=32.0
Q ss_pred EEEEEEeeEEEeccCCEEEEEeccceeeeeeCCCCcEEEecCCeEEEEEecCHHHHHHHHHHhhccCCC
Q 046142 39 KIVGVGYKARAEAEGRLLYLKLGYVHDVELTVPSAVRIFCLKNNVVCCCGLDKHRVHQFAASVRSRKPP 107 (132)
Q Consensus 39 ~lvGvGYra~i~~~g~~L~l~LGySH~i~~~IP~~V~v~v~~~t~I~l~GiDKq~VgqfAa~Ir~~r~p 107 (132)
.+-|||||..+... ...||-+=.+ -..++| .-+|.+.| +.+.|.+|-+.|+.- ||
T Consensus 11 ~VQGVGFR~~v~~~----A~~~gl~G~V-~N~~dG-------~Vei~~qG-~~~~i~~f~~~l~~g-p~ 65 (90)
T PRK14429 11 KVQGVGCRRATLTK----ARALGVTGYV-TNCEDG-------SVEILAQG-SDPAVDNLIAWCEVG-VP 65 (90)
T ss_pred eecCeeeHHHHHHH----HHHhCCEEEE-EECCCC-------eEEEEEEe-CHHHHHHHHHHHhhC-CC
Confidence 56789999987322 2233322221 122333 23566777 566799999999863 44
No 32
>PRK14428 acylphosphatase; Provisional
Probab=41.42 E-value=6.5 Score=27.74 Aligned_cols=54 Identities=15% Similarity=0.133 Sum_probs=31.3
Q ss_pred EEEEEEEEeeEEEeccCCEEEEEeccceeeeeeCCCCcEEEecCCeEEEEEecCHHHHHHHHHHhhc
Q 046142 37 FLKIVGVGYKARAEAEGRLLYLKLGYVHDVELTVPSAVRIFCLKNNVVCCCGLDKHRVHQFAASVRS 103 (132)
Q Consensus 37 ~L~lvGvGYra~i~~~g~~L~l~LGySH~i~~~IP~~V~v~v~~~t~I~l~GiDKq~VgqfAa~Ir~ 103 (132)
.=.+-|||||.++... ..++|-+=-+ -..|+| .-+|.++| +.+.|.+|.+.|+.
T Consensus 15 ~G~VQGVGFR~fv~~~----A~~lgL~G~V-~N~~dG-------sVei~~qG-~~~~i~~fi~~l~~ 68 (97)
T PRK14428 15 TGLVQGVGFRYFTVTQ----ARRLGVQGWV-RNCRDG-------SVELEAQG-SSDAVQALVEQLAI 68 (97)
T ss_pred EEecCCccchHHHHHH----HHHcCCEEEE-EECCCC-------EEEEEEEc-CHHHHHHHHHHHhh
Confidence 3356789999987322 2223322111 123333 23566776 56889999999983
No 33
>cd01231 PH_Lnk LNK-family Pleckstrin homology (PH) domain. LNK-family Pleckstrin homology (PH) domain. The Lnk family of proteins consists of Lnk, APS and SH2B. They are adaptor proteins consisting of a PH domain and an SH2 domain, which mediates signaling through growth factor receptors. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. The lnk family PH domain is likely involved in targeting of the adaptor proteins to the plasma membrane.
Probab=39.59 E-value=70 Score=23.32 Aligned_cols=37 Identities=19% Similarity=0.271 Sum_probs=30.0
Q ss_pred eeeCCCCcEEEe---cCCeEEEEEecCHHHHHHHHHHhhc
Q 046142 67 ELTVPSAVRIFC---LKNNVVCCCGLDKHRVHQFAASVRS 103 (132)
Q Consensus 67 ~~~IP~~V~v~v---~~~t~I~l~GiDKq~VgqfAa~Ir~ 103 (132)
.+++|+....++ .++++++++-.|-|.+.+-.|.||-
T Consensus 67 ~LEmPD~~nTFvLK~~~~~eyI~Ea~d~~q~~SWla~Ir~ 106 (107)
T cd01231 67 RLEMPDNLYTFVLKVDDNTDIIFEVGDEQQLNSWLAELRY 106 (107)
T ss_pred cccccCcccEEEEEecCCceEEEEcCCHHHHHHHHHHHhc
Confidence 356787765554 5678999999999999999999984
No 34
>PRK14451 acylphosphatase; Provisional
Probab=39.32 E-value=8.4 Score=26.53 Aligned_cols=53 Identities=19% Similarity=0.417 Sum_probs=31.2
Q ss_pred EEEEEEEeeEEEeccCCEEEEEeccceeeeeeCCCCcEEEecCCeEEEEEecCHHHHHHHHHHhhc
Q 046142 38 LKIVGVGYKARAEAEGRLLYLKLGYVHDVELTVPSAVRIFCLKNNVVCCCGLDKHRVHQFAASVRS 103 (132)
Q Consensus 38 L~lvGvGYra~i~~~g~~L~l~LGySH~i~~~IP~~V~v~v~~~t~I~l~GiDKq~VgqfAa~Ir~ 103 (132)
=.+-|||||.++......+-|. ||- -..++| .-+|.+.| +.+.|.+|...+++
T Consensus 11 G~VQGVGFR~~~~~~A~~~gl~-G~V----~N~~dG-------~Vei~~qG-~~~~i~~f~~~l~~ 63 (89)
T PRK14451 11 GRVQGVWFRASAKKLAEQLMIS-GWA----RNLADG-------RVEVFACG-KEDKLEEFYTWLQK 63 (89)
T ss_pred EeeCCcCchHHHHHHHHHhCCE-EEE----EECCCC-------CEEEEEEE-CHHHHHHHHHHHhh
Confidence 3567899999873222222221 222 122322 24667788 56779999999984
No 35
>PF11280 DUF3081: Protein of unknown function (DUF3081); InterPro: IPR021432 This family of proteins with unknown function appears to be restricted to Gammaproteobacteria.
Probab=38.27 E-value=25 Score=24.23 Aligned_cols=25 Identities=28% Similarity=0.432 Sum_probs=19.5
Q ss_pred EeeEEEeccCCEEEEEeccceeeeeeC
Q 046142 44 GYKARAEAEGRLLYLKLGYVHDVELTV 70 (132)
Q Consensus 44 GYra~i~~~g~~L~l~LGySH~i~~~I 70 (132)
||.+++ .++.+.|.|||-+.-.+.-
T Consensus 38 GYtv~L--~~~~VtLtl~FHnty~~dy 62 (79)
T PF11280_consen 38 GYTVYL--EDNGVTLTLGFHNTYHLDY 62 (79)
T ss_pred CcEEEE--eCCCEEEEEEeccceecCC
Confidence 899998 7788999999976554443
No 36
>cd02394 vigilin_like_KH K homology RNA-binding domain_vigilin_like. The vigilin family is a large and extended family of multiple KH-domain proteins, including vigilin, also called high density lipoprotein binding protien (HBP), fungal Scp160 and bicaudal-C. Yeast Scp160p has been shown to bind RNA and to associate with both soluble and membrane-bound polyribosomes as a mRNP component. Bicaudal-C is a RNA-binding molecule believed to function in embryonic development at the post-transcriptional level. In general, KH binds single-stranded RNA or DNA. It is found in a wide variety of proteins including ribosomal proteins, transcription factors and post-transcriptional modifiers of mRNA.
Probab=37.86 E-value=74 Score=19.42 Aligned_cols=28 Identities=18% Similarity=0.275 Sum_probs=18.0
Q ss_pred CcEEEecC----CeEEEEEecCHHHHHHHHHHh
Q 046142 73 AVRIFCLK----NNVVCCCGLDKHRVHQFAASV 101 (132)
Q Consensus 73 ~V~v~v~~----~t~I~l~GiDKq~VgqfAa~I 101 (132)
+++|.+++ .+.++|+|. .+.|....+.|
T Consensus 30 g~~I~i~~~~~~~~~v~I~G~-~~~v~~A~~~i 61 (62)
T cd02394 30 GVKIRFPDPGSKSDTITITGP-KENVEKAKEEI 61 (62)
T ss_pred CCEEEcCCCCCCCCEEEEEcC-HHHHHHHHHHh
Confidence 44455544 679999999 56666555444
No 37
>PRK14430 acylphosphatase; Provisional
Probab=36.97 E-value=13 Score=25.77 Aligned_cols=52 Identities=23% Similarity=0.362 Sum_probs=30.5
Q ss_pred EEEEEEeeEEEeccCCEEEEEeccceeeeeeCCCCcEEEecCCeEEEEEecCHHHHHHHHHHhhc
Q 046142 39 KIVGVGYKARAEAEGRLLYLKLGYVHDVELTVPSAVRIFCLKNNVVCCCGLDKHRVHQFAASVRS 103 (132)
Q Consensus 39 ~lvGvGYra~i~~~g~~L~l~LGySH~i~~~IP~~V~v~v~~~t~I~l~GiDKq~VgqfAa~Ir~ 103 (132)
.+-|||||.++......|-|. |+. -.+|+| .-++.++| |.+.|.+|-..|+.
T Consensus 13 ~VQGVGFR~~~~~~A~~lgl~-G~V----rN~~dG-------sVei~~qG-~~~~i~~f~~~l~~ 64 (92)
T PRK14430 13 RVQGVGYRAACADAADDLGLG-GWV----RNRADG-------TVEVMASG-TVRQLEALRAWMEA 64 (92)
T ss_pred eecceeeHHHHHHHHHHhCCE-EEE----EECCCC-------cEEEEEEc-CHHHHHHHHHHHHh
Confidence 567899999873221122211 222 233333 23566776 77999999999954
No 38
>PRK14433 acylphosphatase; Provisional
Probab=36.44 E-value=10 Score=26.00 Aligned_cols=53 Identities=19% Similarity=0.235 Sum_probs=33.5
Q ss_pred EEEEEEEeeEEEeccCCEEEEEeccceeeeeeCCCCcEEEecCCeEEEEEecCHHHHHHHHHHhhc
Q 046142 38 LKIVGVGYKARAEAEGRLLYLKLGYVHDVELTVPSAVRIFCLKNNVVCCCGLDKHRVHQFAASVRS 103 (132)
Q Consensus 38 L~lvGvGYra~i~~~g~~L~l~LGySH~i~~~IP~~V~v~v~~~t~I~l~GiDKq~VgqfAa~Ir~ 103 (132)
=.+-|||||.++.. +...+|.+-.+ -.+|+| .-+|.++|.+ +.|.+|...|++
T Consensus 9 G~VQGVGFR~~v~~----~A~~~~l~G~V-~N~~dG-------~Vei~~~G~~-~~i~~f~~~l~~ 61 (87)
T PRK14433 9 GRVQGVGYRAFVQK----KARELGLSGYA-ENLSDG-------RVEVVAEGPK-EALERLLHWLRR 61 (87)
T ss_pred EeeeCcCchHHHHH----HHHHcCCEEEE-EECCCC-------CEEEEEEECH-HHHHHHHHHHhh
Confidence 36789999998732 22344444332 345555 1346677765 589999999974
No 39
>PRK14423 acylphosphatase; Provisional
Probab=35.70 E-value=13 Score=25.60 Aligned_cols=52 Identities=17% Similarity=0.163 Sum_probs=30.9
Q ss_pred EEEEEEeeEEEeccCCEEEEEeccceeeeeeCCCCcEEEecCCeEEEEEecCHHHHHHHHHHhhc
Q 046142 39 KIVGVGYKARAEAEGRLLYLKLGYVHDVELTVPSAVRIFCLKNNVVCCCGLDKHRVHQFAASVRS 103 (132)
Q Consensus 39 ~lvGvGYra~i~~~g~~L~l~LGySH~i~~~IP~~V~v~v~~~t~I~l~GiDKq~VgqfAa~Ir~ 103 (132)
.+-|||||.++.. +...||.+=-+ -.+++| .-+|.+.|. .+.|.+|.+.++.
T Consensus 14 ~VQGVGFR~~v~~----~A~~lgl~G~V-~N~~dG-------~Vei~~~G~-~~~i~~f~~~l~~ 65 (92)
T PRK14423 14 RVQGVYYRASTRD----TARELGVDGWV-RNLDDG-------RVEAVFEGP-RDAVEAMVEWCHE 65 (92)
T ss_pred ecCCeeehHHHHH----HHHHcCCEEEE-EECCCC-------eEEEEEEEC-HHHHHHHHHHHHh
Confidence 5678999998732 22233333222 123333 125677774 5679999999984
No 40
>PRK14421 acylphosphatase; Provisional
Probab=35.68 E-value=12 Score=26.55 Aligned_cols=57 Identities=21% Similarity=0.156 Sum_probs=34.2
Q ss_pred eEEEEEEEEEEeeEEEeccCCEEEEEeccceeeeeeCCCCcEEEecCCeEEEEEecCHHHHHHHHHHhhc
Q 046142 34 FLRFLKIVGVGYKARAEAEGRLLYLKLGYVHDVELTVPSAVRIFCLKNNVVCCCGLDKHRVHQFAASVRS 103 (132)
Q Consensus 34 f~~~L~lvGvGYra~i~~~g~~L~l~LGySH~i~~~IP~~V~v~v~~~t~I~l~GiDKq~VgqfAa~Ir~ 103 (132)
+...=.+-|||||.++.. +...+|-+--+ -..|+| .-+|.+.|. .+.|.+|.+.|++
T Consensus 8 ~~v~G~VQGVGFR~fv~~----~A~~lgL~G~V-~N~~dG-------~Vei~~~G~-~~~i~~f~~~l~~ 64 (99)
T PRK14421 8 VTIRGRVQGVGYRAWVAR----TAEALGLEGWV-RNRRDG-------SVEALFAGP-ADAVAEMIARCRR 64 (99)
T ss_pred EEEEEeEcCccchHHHHH----HHHHhCCEEEE-EECCCC-------EEEEEEeCC-HHHHHHHHHHHHh
Confidence 444456789999998732 22334433333 345555 124556664 4669999999984
No 41
>PRK14435 acylphosphatase; Provisional
Probab=35.49 E-value=10 Score=26.15 Aligned_cols=53 Identities=23% Similarity=0.412 Sum_probs=31.5
Q ss_pred EEEEEEEeeEEEeccCCEEEEEeccceeeeeeCCCCcEEEecCCeEEEEEecCHHHHHHHHHHhhc
Q 046142 38 LKIVGVGYKARAEAEGRLLYLKLGYVHDVELTVPSAVRIFCLKNNVVCCCGLDKHRVHQFAASVRS 103 (132)
Q Consensus 38 L~lvGvGYra~i~~~g~~L~l~LGySH~i~~~IP~~V~v~v~~~t~I~l~GiDKq~VgqfAa~Ir~ 103 (132)
=.+-|||||..+......+-|. ||. -..|+| .-++.+.| |.+.|.+|.+.|++
T Consensus 10 G~VQGVGFR~~v~~~A~~~gl~-G~V----~N~~dG-------~Vei~~~G-~~~~i~~f~~~l~~ 62 (90)
T PRK14435 10 GIVQGVGFRYFTRRVAKSLGVK-GYV----MNMDDG-------SVFIHAEG-DENALRRFLNEVAK 62 (90)
T ss_pred EEeCCcCChHHHHHHHHHhCCE-EEE----EECCCC-------CEEEEEEE-CHHHHHHHHHHHhh
Confidence 3567899999873322222222 332 233332 24667787 44779999999984
No 42
>PRK14426 acylphosphatase; Provisional
Probab=35.13 E-value=11 Score=25.98 Aligned_cols=57 Identities=23% Similarity=0.467 Sum_probs=34.0
Q ss_pred EEEEEEEeeEEEeccCCEEEEEeccceeeeeeCCCCcEEEecCCeEEEEEecCHHHHHHHHHHhhccCCC
Q 046142 38 LKIVGVGYKARAEAEGRLLYLKLGYVHDVELTVPSAVRIFCLKNNVVCCCGLDKHRVHQFAASVRSRKPP 107 (132)
Q Consensus 38 L~lvGvGYra~i~~~g~~L~l~LGySH~i~~~IP~~V~v~v~~~t~I~l~GiDKq~VgqfAa~Ir~~r~p 107 (132)
=.+-|||||..+.... ..||-+=-+ -..|+| .-++.++| |.+.|.+|.+.|++-.||
T Consensus 12 G~VQGVGFR~~v~~~A----~~~gl~G~V-~N~~dG-------~Vei~~~G-~~~~i~~f~~~l~~g~P~ 68 (92)
T PRK14426 12 GRVQGVGFRYHTQHEA----LKLGLTGYA-KNLDDG-------SVEVVACG-EEEQVEKLMEWLKEGGPR 68 (92)
T ss_pred EeeCCcCchHHHHHHH----HHhCCEEEE-EECCCC-------cEEEEEEe-CHHHHHHHHHHHhcCCCC
Confidence 3567899999873322 223322211 233443 23566777 556699999999975555
No 43
>PRK14445 acylphosphatase; Provisional
Probab=34.35 E-value=14 Score=25.39 Aligned_cols=57 Identities=12% Similarity=0.158 Sum_probs=33.6
Q ss_pred eEEEEEEEEEEeeEEEeccCCEEEEEeccceeeeeeCCCCcEEEecCCeEEEEEecCHHHHHHHHHHhhc
Q 046142 34 FLRFLKIVGVGYKARAEAEGRLLYLKLGYVHDVELTVPSAVRIFCLKNNVVCCCGLDKHRVHQFAASVRS 103 (132)
Q Consensus 34 f~~~L~lvGvGYra~i~~~g~~L~l~LGySH~i~~~IP~~V~v~v~~~t~I~l~GiDKq~VgqfAa~Ir~ 103 (132)
+...=.+-|||||.++.. +...+|-+-.+ -..++| .-.|.+.| |.+.|.+|.+.++.
T Consensus 8 ~~v~G~VQGVGFR~~v~~----~A~~~gl~G~V-~N~~dG-------~Vei~~qG-~~~~l~~f~~~l~~ 64 (91)
T PRK14445 8 LIVSGLVQGVGFRMFIDR----AASELNLSGWV-RNLPDG-------TVEIEAQG-SSGMIDELIKQAER 64 (91)
T ss_pred EEEEEEEcCcCChHHHHH----HHhhCCCEEEE-EECCCC-------eEEEEEEE-CHHHHHHHHHHHHh
Confidence 334446779999998732 22333333222 133333 13566777 55669999999984
No 44
>PRK14450 acylphosphatase; Provisional
Probab=34.05 E-value=12 Score=25.69 Aligned_cols=56 Identities=21% Similarity=0.238 Sum_probs=32.9
Q ss_pred EEEEEEEEEeeEEEeccCCEEEEEeccceeeeeeCCCCcEEEecCCeEEEEEecCHHHHHHHHHHhhc
Q 046142 36 RFLKIVGVGYKARAEAEGRLLYLKLGYVHDVELTVPSAVRIFCLKNNVVCCCGLDKHRVHQFAASVRS 103 (132)
Q Consensus 36 ~~L~lvGvGYra~i~~~g~~L~l~LGySH~i~~~IP~~V~v~v~~~t~I~l~GiDKq~VgqfAa~Ir~ 103 (132)
..=.+-|||||.++... ...+|-+=-+ -.+++|-. -+|.++| |.+.|.+|.+.+++
T Consensus 8 v~G~VQGVGFR~~v~~~----A~~~~l~G~V-~N~~dG~~------Vei~~~G-~~~~v~~f~~~l~~ 63 (91)
T PRK14450 8 VKGKVQGVYFRDFTRTQ----ATRLGLCGYA-KNLANGNE------VEVVAEG-DKDSLLEFLDLLRS 63 (91)
T ss_pred EEEEecCcCcHHHHHHH----HHHcCCEEEE-EECCCCCE------EEEEEEe-CHHHHHHHHHHHhh
Confidence 33457799999987322 2223332221 24455411 2455776 66889999999984
No 45
>PRK14440 acylphosphatase; Provisional
Probab=33.87 E-value=11 Score=25.93 Aligned_cols=53 Identities=15% Similarity=0.300 Sum_probs=32.5
Q ss_pred EEEEEEEeeEEEeccCCEEEEEeccceeeeeeCCCCcEEEecCCeEEEEEecCHHHHHHHHHHhhc
Q 046142 38 LKIVGVGYKARAEAEGRLLYLKLGYVHDVELTVPSAVRIFCLKNNVVCCCGLDKHRVHQFAASVRS 103 (132)
Q Consensus 38 L~lvGvGYra~i~~~g~~L~l~LGySH~i~~~IP~~V~v~v~~~t~I~l~GiDKq~VgqfAa~Ir~ 103 (132)
=.+-|||||..+..... .+|-+=- .-.+++| .-+|.+.|.+ +.|.+|...|++
T Consensus 11 G~VQGVGFR~~v~~~A~----~~gl~G~-V~N~~dG-------~Vei~~~G~~-~~v~~f~~~l~~ 63 (90)
T PRK14440 11 GLVQGVGFRKFVQIHAI----RLGIKGY-AKNLPDG-------SVEVVAEGYE-EALSKLLERIKQ 63 (90)
T ss_pred EeEeccCchHHHHHHHH----HcCCEEE-EEECCCC-------CEEEEEEcCH-HHHHHHHHHHhh
Confidence 35778999998733222 2332221 1233444 2367788855 889999999984
No 46
>PF00013 KH_1: KH domain syndrome, contains KH motifs.; InterPro: IPR018111 The K homology (KH) domain was first identified in the human heterogeneous nuclear ribonucleoprotein (hnRNP) K. It is a domain of around 70 amino acids that is present in a wide variety of quite diverse nucleic acid-binding proteins []. It has been shown to bind RNA [, ]. Like many other RNA-binding motifs, KH motifs are found in one or multiple copies (14 copies in chicken vigilin) and, at least for hnRNP K (three copies) and FMR-1 (two copies), each motif is necessary for in vitro RNA binding activity, suggesting that they may function cooperatively or, in the case of single KH motif proteins (for example, Mer1p), independently []. According to structural [, , ] analysis the KH domain can be separated in two groups. The first group or type-1 contain a beta-alpha-alpha-beta-beta-alpha structure, whereas in the type-2 the two last beta-sheet are located in the N-terminal part of the domain (alpha-beta-beta-alpha-alpha-beta). Sequence similarity between these two folds are limited to a short region (VIGXXGXXI) in the RNA binding motif. This motif is located between helice 1 and 2 in type-1 and between helice 2 and 3 in type-2. Proteins known to contain a type-1 KH domain include bacterial polyribonucleotide nucleotidyltransferases (2.7.7.8 from EC); vertebrate fragile X mental retardation protein 1 (FMR1); eukaryotic heterogeneous nuclear ribonucleoprotein K (hnRNP K), one of at least 20 major proteins that are part of hnRNP particles in mammalian cells; mammalian poly(rC) binding proteins; Artemia salina glycine-rich protein GRP33; yeast PAB1-binding protein 2 (PBP2); vertebrate vigilin; and human high-density lipoprotein binding protein (HDL-binding protein). More information about these proteins can be found at Protein of the Month: RNA Exosomes [].; GO: 0003723 RNA binding; PDB: 1TUA_A 2Z0S_A 1WE8_A 4AM3_B 4AIM_A 4AID_A 2HH3_A 2JVZ_A 1J4W_A 2HH2_A ....
Probab=33.39 E-value=1.1e+02 Score=18.43 Aligned_cols=28 Identities=18% Similarity=0.298 Sum_probs=19.0
Q ss_pred CcEEEecC---CeEEEEEecCHHHHHHHHHHh
Q 046142 73 AVRIFCLK---NNVVCCCGLDKHRVHQFAASV 101 (132)
Q Consensus 73 ~V~v~v~~---~t~I~l~GiDKq~VgqfAa~I 101 (132)
++.+.+++ ...+.|+| +.+.|.+-.+.|
T Consensus 30 ~~~I~i~~~~~~~~v~I~G-~~~~v~~A~~~I 60 (60)
T PF00013_consen 30 GVKIQIPDDDERDIVTISG-SPEQVEKAKKMI 60 (60)
T ss_dssp TSEEEEESTTEEEEEEEEE-SHHHHHHHHHHH
T ss_pred CeEEEEcCCCCcEEEEEEe-CHHHHHHHHhhC
Confidence 44555554 35899999 888887765543
No 47
>PRK14425 acylphosphatase; Provisional
Probab=33.11 E-value=12 Score=26.02 Aligned_cols=53 Identities=19% Similarity=0.268 Sum_probs=30.0
Q ss_pred EEEEEEEeeEEEeccCCEEEEEeccceeeeeeCCCCcEEEecCCeEEEEEecCHHHHHHHHHHhhc
Q 046142 38 LKIVGVGYKARAEAEGRLLYLKLGYVHDVELTVPSAVRIFCLKNNVVCCCGLDKHRVHQFAASVRS 103 (132)
Q Consensus 38 L~lvGvGYra~i~~~g~~L~l~LGySH~i~~~IP~~V~v~v~~~t~I~l~GiDKq~VgqfAa~Ir~ 103 (132)
=.+-|||||.++... ...+|.+=-+ -..|+| .-+|.+.|.+ +.|.+|...|+.
T Consensus 14 G~VQGVGFR~~v~~~----A~~~gl~G~V-~N~~dG-------sVei~~qG~~-~~le~f~~~l~~ 66 (94)
T PRK14425 14 GRVQGVGFRDWTRDE----AERLGLTGWV-RNESDG-------SVTALIAGPD-SAISAMIERFRR 66 (94)
T ss_pred EeEecccchHHHHHH----HHHhCCEEEE-EECCCC-------eEEEEEEeCH-HHHHHHHHHHhh
Confidence 356789999987322 2233322111 233333 2345566544 459999999985
No 48
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=31.71 E-value=2.4e+02 Score=21.89 Aligned_cols=53 Identities=23% Similarity=0.219 Sum_probs=36.3
Q ss_pred eCCCCcEEEecCCeEEEEEecC---HHHHHHHHHHhhccCCCC-CCCCCceeecceEEE
Q 046142 69 TVPSAVRIFCLKNNVVCCCGLD---KHRVHQFAASVRSRKPPD-PFKGKGIMCADEVIK 123 (132)
Q Consensus 69 ~IP~~V~v~v~~~t~I~l~GiD---Kq~VgqfAa~Ir~~r~pe-pYKGKGI~~~~E~I~ 123 (132)
.+-.++.+++.....+.|.|.+ |..+-+..+-+-.. +|+ |+.|. |.++|+.+.
T Consensus 18 ~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~-~~~~~~~G~-v~~~g~~i~ 74 (252)
T PRK14256 18 HAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDL-VPSARVTGK-ILLDDTDIY 74 (252)
T ss_pred eEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccC-CCCCCCceE-EEECCEEcc
Confidence 3567788888777788888776 77777766654322 143 56665 888988774
No 49
>cd06480 ACD_HspB8_like Alpha-crystallin domain (ACD) found in mammalian 21.6 KDa small heat shock protein (sHsp) HspB8, also denoted as Hsp22 in humans, and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. A chaperone complex formed of HspB8 and Bag3 stimulates degradation of protein complexes by macroautophagy. HspB8 also forms complexes with Hsp27 (HspB1), MKBP (HspB2), HspB3, alphaB-crystallin (HspB5), Hsp20 (HspB6), and cvHsp (HspB7). These latter interactions may depend on phosphorylation of the respective partner sHsp. HspB8 may participate in the regulation of cell proliferation, cardiac hypertrophy, apoptosis, and carcinogenesis. Point mutations in HspB8 have been correlated with the development of several congenital neurological diseases, including Charcot Marie tooth disease and distal motor neuropathy type II.
Probab=30.96 E-value=60 Score=22.55 Aligned_cols=20 Identities=15% Similarity=0.238 Sum_probs=16.1
Q ss_pred CCCcEEEecCCeEEEEEecCH
Q 046142 71 PSAVRIFCLKNNVVCCCGLDK 91 (132)
Q Consensus 71 P~~V~v~v~~~t~I~l~GiDK 91 (132)
|++|+|++.+ +.|+|+|--.
T Consensus 28 pEDL~Vkv~~-~~L~V~Gkh~ 47 (91)
T cd06480 28 PEELTVKTKD-GFVEVSGKHE 47 (91)
T ss_pred HHHcEEEEEC-CEEEEEEEEC
Confidence 8899999887 5788988643
No 50
>PRK14432 acylphosphatase; Provisional
Probab=30.69 E-value=20 Score=24.85 Aligned_cols=58 Identities=19% Similarity=0.265 Sum_probs=33.0
Q ss_pred EEEEEEEEeeEEEeccCCEEEEEeccceeeeeeCCCCcEEEecCCeEEEEEecCHHHHHHHHHHhhccCCC
Q 046142 37 FLKIVGVGYKARAEAEGRLLYLKLGYVHDVELTVPSAVRIFCLKNNVVCCCGLDKHRVHQFAASVRSRKPP 107 (132)
Q Consensus 37 ~L~lvGvGYra~i~~~g~~L~l~LGySH~i~~~IP~~V~v~v~~~t~I~l~GiDKq~VgqfAa~Ir~~r~p 107 (132)
.=.+-|||||..+......+-|. ||- -..|+| .-+|.+.+-|.+.|.+|...++.= ||
T Consensus 9 ~G~VQGVGFR~~v~~~A~~lgl~-G~V----~N~~dG-------~Vei~~~~G~~~~v~~f~~~l~~g-p~ 66 (93)
T PRK14432 9 SGKVQGVGFRFFTEQIANNMKLK-GFV----KNLNDG-------RVEIVAFFNTKEQMKKFEKLLKNG-NK 66 (93)
T ss_pred EEeecCeeehHHHHHHHHHhCCE-EEE----EECCCC-------CEEEEEEECCHHHHHHHHHHHHhC-CC
Confidence 33567899999873222222211 221 133333 124555545789999999998874 44
No 51
>PRK03341 arginine repressor; Provisional
Probab=30.30 E-value=1.5e+02 Score=22.93 Aligned_cols=58 Identities=19% Similarity=0.170 Sum_probs=43.7
Q ss_pred EeccCCEEEEEe--ccceeeee-----eCCCCcEEEecCCeEEEEEecCHHHHHHHHHHhhccCCCCC
Q 046142 49 AEAEGRLLYLKL--GYVHDVEL-----TVPSAVRIFCLKNNVVCCCGLDKHRVHQFAASVRSRKPPDP 109 (132)
Q Consensus 49 i~~~g~~L~l~L--GySH~i~~-----~IP~~V~v~v~~~t~I~l~GiDKq~VgqfAa~Ir~~r~pep 109 (132)
++..++.+.++. |+.+.+-. .+|+ |-=++-+...|.|-.-|-+...+++..|+++ |||
T Consensus 103 v~~~~~lvVIkT~pG~A~~va~~iD~~~~~e-IlGTIAGDDTIlvi~~~~~~a~~l~~~i~~~--~~~ 167 (168)
T PRK03341 103 ADASANLAVLRTPPGAAQYLASAIDRAALPE-VVGTIAGDDTVLVIARDPMTGAELAARLLRL--AER 167 (168)
T ss_pred EeeeCCEEEEEcCCChHHHHHHHHHhCCCCC-eEEEeecCCEEEEEeCCHHHHHHHHHHHHhh--ccC
Confidence 334567777766 88776655 5555 7666777777888889999999999999999 654
No 52
>PRK14441 acylphosphatase; Provisional
Probab=29.71 E-value=17 Score=25.16 Aligned_cols=56 Identities=21% Similarity=0.312 Sum_probs=32.0
Q ss_pred EEEEEEEeeEEEeccCCEEEEEeccceeeeeeCCCCcEEEecCCeEEEEEecCHHHHHHHHHHhhccCCC
Q 046142 38 LKIVGVGYKARAEAEGRLLYLKLGYVHDVELTVPSAVRIFCLKNNVVCCCGLDKHRVHQFAASVRSRKPP 107 (132)
Q Consensus 38 L~lvGvGYra~i~~~g~~L~l~LGySH~i~~~IP~~V~v~v~~~t~I~l~GiDKq~VgqfAa~Ir~~r~p 107 (132)
=.+-|||||.++... ...||-+=-+ -..|+| .-++.++| |.+.|.+|...++. .||
T Consensus 13 G~VQGVGFR~~v~~~----A~~lgL~G~V-~N~~dG-------~Vei~~qG-~~~~i~~f~~~l~~-gp~ 68 (93)
T PRK14441 13 GRVQGVAFRQSAADE----ARRLGVEGWV-RNLPDG-------RVEAEAEG-ERAAVGALVRWCHA-GPP 68 (93)
T ss_pred EecCCccchHHHHHH----HhhcCcEEEE-EECCCC-------EEEEEEEE-CHHHHHHHHHHHhh-CCC
Confidence 356789999987322 2222222111 133443 12566777 56789999999973 444
No 53
>PF14470 bPH_3: Bacterial PH domain
Probab=27.32 E-value=1.7e+02 Score=18.99 Aligned_cols=31 Identities=13% Similarity=0.207 Sum_probs=25.1
Q ss_pred CCcEEEecCCeEEEEEecCHHHHHHHHHHhhc
Q 046142 72 SAVRIFCLKNNVVCCCGLDKHRVHQFAASVRS 103 (132)
Q Consensus 72 ~~V~v~v~~~t~I~l~GiDKq~VgqfAa~Ir~ 103 (132)
..+.+.+ +...+.+..+++..+..|...|++
T Consensus 66 ~~i~i~~-~~~~~~i~~i~k~~~~~~~~~i~~ 96 (96)
T PF14470_consen 66 GKITIET-NGEKIKIDNIQKGDVKEFYEYIKE 96 (96)
T ss_pred cEEEEEE-CCEEEEEEEcCHHHHHHHHHHHhC
Confidence 4566666 456889999999999999998874
No 54
>PF05137 PilN: Fimbrial assembly protein (PilN); InterPro: IPR007813 PilN is a plasmid-encoded, lipoprotein which locates to the outer membrane of bacteria and are part of a thin pilus required only for liquid mating [].
Probab=25.96 E-value=1.7e+02 Score=18.32 Aligned_cols=36 Identities=19% Similarity=0.351 Sum_probs=24.1
Q ss_pred eeCCCCcEEEec--CCeEEEEEec--CHHHHHHHHHHhhc
Q 046142 68 LTVPSAVRIFCL--KNNVVCCCGL--DKHRVHQFAASVRS 103 (132)
Q Consensus 68 ~~IP~~V~v~v~--~~t~I~l~Gi--DKq~VgqfAa~Ir~ 103 (132)
-.+|+||.++-- +.+.+.|+|. |.+.|.+|..++++
T Consensus 8 ~~~P~~v~l~~l~~~~~~l~i~G~a~~~~~v~~f~~~L~~ 47 (78)
T PF05137_consen 8 RALPEGVWLTSLSINGNTLSISGYADSYQSVAAFLRNLEQ 47 (78)
T ss_pred hhCCCCEEEEEEEEeCCEEEEEEEECCHHHHHHHHHHHhh
Confidence 358999876542 3457888775 46777777666664
No 55
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=25.54 E-value=3.1e+02 Score=21.21 Aligned_cols=54 Identities=17% Similarity=0.175 Sum_probs=38.8
Q ss_pred eCCCCcEEEecCCeEEEEEecC---HHHHHHHHHHhhccCCCCCCCCCceeecceEEE
Q 046142 69 TVPSAVRIFCLKNNVVCCCGLD---KHRVHQFAASVRSRKPPDPFKGKGIMCADEVIK 123 (132)
Q Consensus 69 ~IP~~V~v~v~~~t~I~l~GiD---Kq~VgqfAa~Ir~~r~pepYKGKGI~~~~E~I~ 123 (132)
.+-.++.+++.....+.|.|.+ |..+-+..+-+-..-+|.|+.|. |.++|+.+.
T Consensus 20 ~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~-i~~~g~~i~ 76 (253)
T PRK14242 20 QALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGE-ILLDGENIY 76 (253)
T ss_pred eeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceE-EEECCEEcc
Confidence 3567888888877788888876 88888887766443355566664 888887664
No 56
>KOG1120 consensus Fe-S cluster biosynthesis protein ISA1 (contains a HesB-like domain) [Inorganic ion transport and metabolism]
Probab=25.29 E-value=1.8e+02 Score=22.02 Aligned_cols=82 Identities=21% Similarity=0.197 Sum_probs=50.5
Q ss_pred ccchhHHHHhhhhhhhhhccccceEEEEEE-------EEEEeeEEEeccCCEEEEEeccceeeeeeCCCCcEEEecCCeE
Q 046142 11 NEDALNHMSNLCDKFTLTWMEAKFLRFLKI-------VGVGYKARAEAEGRLLYLKLGYVHDVELTVPSAVRIFCLKNNV 83 (132)
Q Consensus 11 ~~~~~~h~~n~~~~~~i~Gv~~gf~~~L~l-------vGvGYra~i~~~g~~L~l~LGySH~i~~~IP~~V~v~v~~~t~ 83 (132)
+.++.+|++-|..- .+=-.-|++ .|.-|-.+...+.+ - .-..-+-+||+|+|+....
T Consensus 33 Tp~Av~~ik~ll~~-------~~e~~~lrigVk~rGCnGlsYtleY~~~kg-------k--fDE~VeqdGv~I~ie~KA~ 96 (134)
T KOG1120|consen 33 TPSAVNHIKQLLSD-------KPEDVCLRIGVKQRGCNGLSYTLEYTKTKG-------K--FDEVVEQDGVRIFIEPKAL 96 (134)
T ss_pred CHHHHHHHHHHHHh-------CCcCceeEEEEecCCcCcceeeeeeeccCC-------C--CcceeeecCcEEEEcccce
Confidence 45899999999831 111111222 34445444432211 1 1233455899999998899
Q ss_pred EEEEecCHHHHHHHHHHhhccCCCC
Q 046142 84 VCCCGLDKHRVHQFAASVRSRKPPD 108 (132)
Q Consensus 84 I~l~GiDKq~VgqfAa~Ir~~r~pe 108 (132)
+.+.|.--+-|..--+.=..|..|+
T Consensus 97 l~liGteMDyvddkL~Sefvf~npn 121 (134)
T KOG1120|consen 97 LTLIGTEMDYVDDKLSSEFVFSNPN 121 (134)
T ss_pred eeeccceehhhhhhhcCceEeeCCC
Confidence 9999998887776666555666666
No 57
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=25.05 E-value=2.8e+02 Score=21.45 Aligned_cols=54 Identities=15% Similarity=0.178 Sum_probs=38.3
Q ss_pred CCCCcEEEecCCeEEEEEecC---HHHHHHHHHHhhccCCCCCCCCCceeecceEEEe
Q 046142 70 VPSAVRIFCLKNNVVCCCGLD---KHRVHQFAASVRSRKPPDPFKGKGIMCADEVIKK 124 (132)
Q Consensus 70 IP~~V~v~v~~~t~I~l~GiD---Kq~VgqfAa~Ir~~r~pepYKGKGI~~~~E~I~~ 124 (132)
+-.++.+++.....+.|.|.+ |..+-+..+-+....+|+|+.|. |.++|+.+..
T Consensus 18 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~-i~~~g~~~~~ 74 (250)
T PRK14245 18 ALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGE-IRIDGRNIYD 74 (250)
T ss_pred EEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceE-EEECCEeccc
Confidence 456777777776777787776 88888887766555566666664 7888877653
No 58
>cd06472 ACD_ScHsp26_like Alpha crystallin domain (ACD) found in Saccharomyces cerevisiae (Sc) small heat shock protein (Hsp)26 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. ScHsp26 is temperature-regulated, it switches from an inactive to a chaperone-active form upon elevation in temperature. It associates into large 24-mers storage forms which upon heat shock disassociate into dimers. These dimers initiate the interaction with non-native substrate proteins and re-assemble into large globular assemblies having one monomer of substrate bound per dimer. This group also contains Arabidopsis thaliana (Ath) Hsp15.7, a peroxisomal matrix protein which can complement the morphological phenotype of S. cerevisiae mutants deficient in Hsps26. AthHsp15.7 is minimally expressed under normal conditions and is strongly induced by heat and oxidative st
Probab=23.91 E-value=1.1e+02 Score=20.37 Aligned_cols=25 Identities=20% Similarity=0.271 Sum_probs=18.8
Q ss_pred eeeeCC----CCcEEEecCCeEEEEEecC
Q 046142 66 VELTVP----SAVRIFCLKNNVVCCCGLD 90 (132)
Q Consensus 66 i~~~IP----~~V~v~v~~~t~I~l~GiD 90 (132)
+.+.+| ++|+|.+.+.+.++|+|.-
T Consensus 13 i~~~lPGv~~edi~i~v~~~~~L~I~g~~ 41 (92)
T cd06472 13 FKADVPGVKKEDVKVEVEDGRVLRISGER 41 (92)
T ss_pred EEEECCCCChHhEEEEEeCCCEEEEEEEe
Confidence 344555 8999999765689999964
No 59
>PF13037 DUF3898: Domain of unknown function (DUF3898)
Probab=23.45 E-value=1.3e+02 Score=21.38 Aligned_cols=48 Identities=23% Similarity=0.284 Sum_probs=33.0
Q ss_pred hhccccceEEEEEEEEEEeeEEEeccCCEEEEEeccceeeeeeCCCCcE
Q 046142 27 LTWMEAKFLRFLKIVGVGYKARAEAEGRLLYLKLGYVHDVELTVPSAVR 75 (132)
Q Consensus 27 i~Gv~~gf~~~L~lvGvGYra~i~~~g~~L~l~LGySH~i~~~IP~~V~ 75 (132)
++|+-..|=-+|.+-=+|=|-.+-.+|+.+.|.=|+| |+.+--|+++.
T Consensus 36 Vk~lLaDfG~~iHiAKv~~RYv~liEgd~~~FEKG~S-PVEflkP~~l~ 83 (91)
T PF13037_consen 36 VKGLLADFGETIHIAKVNDRYVLLIEGDSLQFEKGFS-PVEFLKPEDLQ 83 (91)
T ss_pred hhHHHHhhccceeEEEECCEEEEEEEcceEEEccCCC-ceeeeCchhHH
Confidence 4555555656666655554444444888999999998 88888887753
No 60
>PF13629 T2SS-T3SS_pil_N: Pilus formation protein N terminal region
Probab=23.19 E-value=2.2e+02 Score=18.33 Aligned_cols=15 Identities=27% Similarity=0.288 Sum_probs=10.1
Q ss_pred EEEEEeccceeeeee
Q 046142 55 LLYLKLGYVHDVELT 69 (132)
Q Consensus 55 ~L~l~LGySH~i~~~ 69 (132)
.|.|..|.|+.+.++
T Consensus 4 ~l~l~~g~s~~l~~~ 18 (72)
T PF13629_consen 4 SLTLTVGQSRILRLP 18 (72)
T ss_pred EEEEeCCCEEEEEcC
Confidence 567777777766653
No 61
>PRK13781 paaB phenylacetate-CoA oxygenase subunit PaaB; Provisional
Probab=21.91 E-value=33 Score=24.51 Aligned_cols=15 Identities=33% Similarity=0.417 Sum_probs=13.2
Q ss_pred ccceeeeeeCCCCcE
Q 046142 61 GYVHDVELTVPSAVR 75 (132)
Q Consensus 61 GySH~i~~~IP~~V~ 75 (132)
=|.||.++.||++|.
T Consensus 79 ~YRh~tfy~~p~~v~ 93 (95)
T PRK13781 79 VYRHPTFYTLPDEVG 93 (95)
T ss_pred cccCcccccCccccC
Confidence 489999999999974
No 62
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=20.97 E-value=2.5e+02 Score=23.09 Aligned_cols=58 Identities=21% Similarity=0.236 Sum_probs=43.6
Q ss_pred eeCCCCcEEEecCCeEEEEEecCHHHHHHHHHHhhccCCCCCCCCCc-eeecceEEEecCCcc
Q 046142 68 LTVPSAVRIFCLKNNVVCCCGLDKHRVHQFAASVRSRKPPDPFKGKG-IMCADEVIKKKVGKK 129 (132)
Q Consensus 68 ~~IP~~V~v~v~~~t~I~l~GiDKq~VgqfAa~Ir~~r~pepYKGKG-I~~~~E~I~~K~gKk 129 (132)
.++-.||.+...+...|.|-|.+=.-=.-|..-|--+-.|.. | |..+||-|++|.++-
T Consensus 19 ~eVLKGvSL~A~~GdVisIIGsSGSGKSTfLRCiN~LE~P~~----G~I~v~geei~~k~~~~ 77 (256)
T COG4598 19 HEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSA----GSIRVNGEEIRLKRDKD 77 (256)
T ss_pred chhhcceeeecCCCCEEEEecCCCCchhHHHHHHHhhcCCCC----ceEEECCeEEEeeeCCC
Confidence 356678888877777777777765444567777777777755 5 999999999998764
No 63
>PF00338 Ribosomal_S10: Ribosomal protein S10p/S20e; InterPro: IPR001848 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Evidence suggests that, in prokaryotes, the peptidyl transferase reaction is performed by the large subunit 23S rRNA, whereas proteins probably have a greater role in eukaryotic ribosomes. Most of the proteins lie close to, or on the surface of, the 30S subunit, arranged peripherally around the rRNA []. The small subunit ribosomal proteins can be categorised as primary binding proteins, which bind directly and independently to 16S rRNA; secondary binding proteins, which display no specific affinity for 16S rRNA, but its assembly is contingent upon the presence of one or more primary binding proteins; and tertiary binding proteins, which require the presence of one or more secondary binding proteins and sometimes other tertiary binding proteins. The small ribosomal subunit protein S10 consists of about 100 amino acid residues. In Escherichia coli, S10 is involved in binding tRNA to the ribosome, and also operates as a transcriptional elongation factor []. Experimental evidence [] has revealed that S10 has virtually no groups exposed on the ribosomal surface, and is one of the "split proteins": these are a discrete group that are selectively removed from 30S subunits under low salt conditions and are required for the formation of activated 30S reconstitution intermediate (RI*) particles. S10 belongs to a family of proteins [] that includes: bacteria S10; algal chloroplast S10; cyanelle S10; archaebacterial S10; Marchantia polymorpha and Prototheca wickerhamii mitochondrial S10; Arabidopsis thaliana mitochondrial S10 (nuclear encoded); vertebrate S20; plant S20; and yeast URP2.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 1S1H_J 3U5G_U 3O30_N 3O2Z_N 3IZB_J 3U5C_U 3R2C_J 3R2D_J 2ZKQ_j 2XQD_J ....
Probab=20.86 E-value=1.3e+02 Score=20.19 Aligned_cols=23 Identities=9% Similarity=0.093 Sum_probs=20.5
Q ss_pred EEEEEecCHHHHHHHHHHhhccC
Q 046142 83 VVCCCGLDKHRVHQFAASVRSRK 105 (132)
Q Consensus 83 ~I~l~GiDKq~VgqfAa~Ir~~r 105 (132)
.|.++|-|...|..++..|..+=
T Consensus 2 ~I~l~s~d~~~l~~~~~~i~~~~ 24 (97)
T PF00338_consen 2 RIKLKSYDKKLLESYVKFIHKLA 24 (97)
T ss_dssp EEEEEESSHHHHHHHHHHHHHHH
T ss_pred EEEEEECCHHHHHHHHHHHHHHH
Confidence 57899999999999999998774
No 64
>cd02413 40S_S3_KH K homology RNA-binding (KH) domain of the eukaryotic 40S small ribosomal subunit protein S3. S3 is part of the head region of the 40S ribosomal subunit and is believed to interact with mRNA as it threads its way from the latch into the channel. The KH motif is a beta-alpha-alpha-beta-beta unit that folds into an alpha-beta structure with a three stranded beta-sheet interupted by two contiguous helices. In general, KH binds single-stranded RNA or DNA. It is found in a wide variety of proteins including ribosomal proteins, transcription factors and post-transcriptional modifiers of mRNA.
Probab=20.70 E-value=2.4e+02 Score=18.96 Aligned_cols=51 Identities=18% Similarity=0.246 Sum_probs=32.4
Q ss_pred EeccceeeeeeCCCCcEEEecCCeEEEEEecCHHHHHHHHHHhhcc-CCCCC
Q 046142 59 KLGYVHDVELTVPSAVRIFCLKNNVVCCCGLDKHRVHQFAASVRSR-KPPDP 109 (132)
Q Consensus 59 ~LGySH~i~~~IP~~V~v~v~~~t~I~l~GiDKq~VgqfAa~Ir~~-r~pep 109 (132)
.-|||+-..-.-|..++|.+-...-=++-|-+-+.+.++...|+++ +-+||
T Consensus 17 ~agis~IeI~Rt~~~i~I~I~tarPg~vIG~~G~~i~~L~~~L~k~~~~~~~ 68 (81)
T cd02413 17 EDGYSGVEVRVTPTRTEIIIRATRTQNVLGEKGRRIRELTSLVQKRFNFPEG 68 (81)
T ss_pred hCCeeeEEEEEcCCeEEEEEEeCCCceEECCCchhHHHHHHHHHHHhCCCCC
Confidence 3577777777778878777643332346677777777777777654 33444
No 65
>PRK14444 acylphosphatase; Provisional
Probab=20.44 E-value=19 Score=24.87 Aligned_cols=53 Identities=15% Similarity=0.148 Sum_probs=30.1
Q ss_pred EEEEEEEeeEEEeccCCEEEEEeccceeeeeeCCCCcEEEecCCeEEEEEecCHHHHHHHHHHhhc
Q 046142 38 LKIVGVGYKARAEAEGRLLYLKLGYVHDVELTVPSAVRIFCLKNNVVCCCGLDKHRVHQFAASVRS 103 (132)
Q Consensus 38 L~lvGvGYra~i~~~g~~L~l~LGySH~i~~~IP~~V~v~v~~~t~I~l~GiDKq~VgqfAa~Ir~ 103 (132)
=.+-|||||..+... ...||-+=-+ -.+++| .-+|.+.| |.+.|.+|...|+.
T Consensus 12 G~VQGVGFR~~v~~~----A~~lgl~G~V-~N~~dG-------~Vei~~qG-~~~~i~~f~~~l~~ 64 (92)
T PRK14444 12 GRVQGVNFRAYTRDR----AREAGVKGWV-RNLSDG-------RVEAVFEG-SRPAVQKMISWCYS 64 (92)
T ss_pred EeeCCcCcHHHHHHH----HHHhCCEEEE-EECCCC-------cEEEEEEc-CHHHHHHHHHHHHh
Confidence 356689999987322 2222222111 123333 12566776 45669999999984
No 66
>PF08512 Rtt106: Histone chaperone Rttp106-like; InterPro: IPR013719 This is a domain of unknown function that is associated with a number of different protein families. It is found in Rtt106p, which is a histone chaperone involved in heterochromatin-mediated silencing []. It is also found in genes annotated as transcription factors/regulators. This domain is the C-terminal domain of yeast Spt16p P32558 from SWISSPROT, which is a subunit of the heterodimeric yeast FACT complex (Spt16p-Pob3p, IPR000969 from INTERPRO) []. In addition Spt16p and its relatives, in this entry, are described as non-peptidase homologues belonging to the MEROPS peptidase family M24. The FACT complex facilitates RNA Polymerase II transcription elongation through nucleosomes by destabilising and then reassembling nucleosome structure [, ]. ; PDB: 3TW1_A 3GYO_A 3TO1_A 3FSS_A 3TVV_B 3GYP_A 2GCJ_D 2GCL_A.
Probab=20.22 E-value=1.7e+02 Score=20.01 Aligned_cols=32 Identities=6% Similarity=0.125 Sum_probs=24.0
Q ss_pred CcEEEecC--CeEEEEEecCHHHHHHHHHHhhcc
Q 046142 73 AVRIFCLK--NNVVCCCGLDKHRVHQFAASVRSR 104 (132)
Q Consensus 73 ~V~v~v~~--~t~I~l~GiDKq~VgqfAa~Ir~~ 104 (132)
++.+..++ .+.+.+++||++....+...+++.
T Consensus 55 Dl~v~~k~~~~~~~~fs~I~~~e~~~l~~~l~~~ 88 (95)
T PF08512_consen 55 DLVVILKDYEGPPHEFSSIDREEYDNLKDFLKSK 88 (95)
T ss_dssp EEEEEETT-TS-EEEEEEEEGGGHHHHHHHHHHC
T ss_pred EEEEEEecCCCCcEEEeeECHHHHHHHHHHHHHC
Confidence 34555554 579999999999999988887764
No 67
>PRK14438 acylphosphatase; Provisional
Probab=20.19 E-value=26 Score=24.05 Aligned_cols=52 Identities=15% Similarity=0.215 Sum_probs=30.1
Q ss_pred EEEEEEeeEEEeccCCEEEEEeccceeeeeeCCCCcEEEecCCeEEEEEecCHHHHHHHHHHhhc
Q 046142 39 KIVGVGYKARAEAEGRLLYLKLGYVHDVELTVPSAVRIFCLKNNVVCCCGLDKHRVHQFAASVRS 103 (132)
Q Consensus 39 ~lvGvGYra~i~~~g~~L~l~LGySH~i~~~IP~~V~v~v~~~t~I~l~GiDKq~VgqfAa~Ir~ 103 (132)
.+-|||||.++... ...+|-+=.+ -..|+| .-.|.++|. .+.|.+|-..++.
T Consensus 12 ~VQGVGFR~~~~~~----A~~~gl~G~V-~N~~dG-------~Vei~~qG~-~~~i~~f~~~l~~ 63 (91)
T PRK14438 12 LVQGVAFRHHTQQT----AQRLNVSGWV-KNLPNG-------SVQGCFEGE-ETDVAALIDWCHH 63 (91)
T ss_pred ecCCcCccHHHHHH----HHHcCCEEEE-EECCCC-------EEEEEEEEC-HHHHHHHHHHHhh
Confidence 46689999987322 2233322211 122333 125778885 5669999999973
Done!