Query 046142
Match_columns 132
No_of_seqs 118 out of 844
Neff 5.4
Searched_HMMs 29240
Date Mon Mar 25 15:51:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046142.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/046142hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1rl6_A Protein (ribosomal prot 100.0 1.7E-48 5.8E-53 301.0 9.3 110 14-130 67-176 (177)
2 1nkw_E 50S ribosomal protein L 100.0 1.1E-47 3.9E-52 303.6 13.5 110 15-131 96-205 (212)
3 3r8s_G 50S ribosomal protein L 100.0 9.3E-48 3.2E-52 296.5 8.7 111 13-130 66-176 (176)
4 3v2d_H 50S ribosomal protein L 100.0 2.5E-47 8.5E-52 295.0 9.6 112 13-131 67-178 (180)
5 2zjr_E 50S ribosomal protein L 100.0 1.6E-48 5.6E-53 303.0 2.6 111 14-131 68-178 (185)
6 3bbo_I Ribosomal protein L6; l 100.0 8.4E-48 2.9E-52 306.3 5.8 110 15-131 112-221 (223)
7 1vq8_E 50S ribosomal protein L 100.0 6E-36 2.1E-40 231.2 10.2 103 13-126 65-173 (178)
8 3j21_F 50S ribosomal protein L 100.0 8.3E-33 2.8E-37 214.5 9.0 108 13-129 70-181 (184)
9 2zkr_e 60S ribosomal protein L 100.0 2.6E-32 9E-37 212.8 9.5 105 13-125 72-184 (192)
10 3iz5_F 60S ribosomal protein L 100.0 4.1E-30 1.4E-34 200.2 9.9 106 13-126 71-184 (190)
11 4a17_E RPL9, 60S ribosomal pro 100.0 8E-30 2.7E-34 198.3 10.3 106 13-126 70-183 (188)
12 3u5e_H L8, RP24, YL11, 60S rib 100.0 1.6E-29 5.4E-34 197.0 10.8 106 13-126 70-185 (191)
13 2cql_A OK/SW-CL.103, 60S ribos 81.2 0.26 8.8E-06 34.0 -0.4 18 14-36 80-97 (100)
14 2cql_A OK/SW-CL.103, 60S ribos 78.4 1.6 5.4E-05 30.0 3.0 23 67-90 16-38 (100)
15 1rl6_A Protein (ribosomal prot 59.9 6.7 0.00023 29.4 3.1 23 67-90 7-29 (177)
16 1vq8_E 50S ribosomal protein L 58.9 7.5 0.00026 29.3 3.2 23 67-90 5-27 (178)
17 3j21_F 50S ribosomal protein L 58.0 7.8 0.00027 29.3 3.2 23 67-90 10-32 (184)
18 3u5e_H L8, RP24, YL11, 60S rib 57.5 8.1 0.00028 29.4 3.2 24 66-90 8-31 (191)
19 2zkr_e 60S ribosomal protein L 57.3 6.9 0.00024 29.7 2.8 23 67-90 9-31 (192)
20 3iz5_F 60S ribosomal protein L 57.1 8.2 0.00028 29.3 3.2 24 66-90 8-31 (190)
21 3v2d_H 50S ribosomal protein L 57.0 7.6 0.00026 29.2 3.0 23 67-90 8-30 (180)
22 1nkw_E 50S ribosomal protein L 55.3 7.8 0.00027 30.1 2.8 23 67-90 35-57 (212)
23 4a17_E RPL9, 60S ribosomal pro 54.7 8.1 0.00028 29.3 2.8 24 66-90 8-31 (188)
24 3bbo_I Ribosomal protein L6; l 46.9 7.9 0.00027 30.2 1.6 23 67-90 50-72 (223)
25 3r8s_G 50S ribosomal protein L 43.9 7.1 0.00024 29.2 0.9 21 68-89 8-28 (176)
26 1x4m_A FAR upstream element bi 39.8 40 0.0014 21.9 4.1 30 82-112 62-92 (94)
27 2zjr_E 50S ribosomal protein L 38.2 7.4 0.00025 29.5 0.2 23 67-90 8-30 (185)
28 4fqn_A Malcavernin; helical do 34.5 13 0.00045 25.7 1.0 18 89-106 29-46 (98)
29 2opv_A KHSRP protein; KH domai 33.3 51 0.0018 20.8 3.8 20 84-104 63-82 (85)
30 1vig_A Vigilin; RNA-binding pr 29.5 76 0.0026 19.4 4.0 31 73-104 35-69 (71)
31 2hh2_A KH-type splicing regula 27.4 88 0.003 20.8 4.3 22 82-104 55-76 (107)
32 2ctj_A Vigilin; K homology typ 25.5 58 0.002 21.5 3.0 31 73-104 48-82 (95)
33 4en6_A Hemagglutinin component 24.6 1.7E+02 0.006 22.4 5.9 38 37-74 137-180 (224)
34 2ctk_A Vigilin; K homology typ 23.6 77 0.0026 21.1 3.4 30 73-103 47-80 (104)
35 3lyw_A YBBR family protein; st 22.8 67 0.0023 21.4 2.9 25 63-87 58-82 (90)
No 1
>1rl6_A Protein (ribosomal protein L6); RNA-binding protein, gentamicin resistance, alpha/beta protein; 2.00A {Geobacillus stearothermophilus} SCOP: d.141.1.1 d.141.1.1 PDB: 1giy_H 1ml5_h* 1c04_B 1yl3_H 2b66_H 2b9n_H 2b9p_H 1eg0_J 487d_J
Probab=100.00 E-value=1.7e-48 Score=300.96 Aligned_cols=110 Identities=34% Similarity=0.612 Sum_probs=101.0
Q ss_pred hhHHHHhhhhhhhhhccccceEEEEEEEEEEeeEEEeccCCEEEEEeccceeeeeeCCCCcEEEecCCeEEEEEecCHHH
Q 046142 14 ALNHMSNLCDKFTLTWMEAKFLRFLKIVGVGYKARAEAEGRLLYLKLGYVHDVELTVPSAVRIFCLKNNVVCCCGLDKHR 93 (132)
Q Consensus 14 ~~~h~~n~~~~~~i~Gv~~gf~~~L~lvGvGYra~i~~~g~~L~l~LGySH~i~~~IP~~V~v~v~~~t~I~l~GiDKq~ 93 (132)
--+|++||+ .||++||+++|+|+|+||||++ +|+.|.|+||||||+.++||+||+++++++|+|+|+|+|||.
T Consensus 67 ~rsli~Nmi-----~GVt~Gf~~~L~lvGvGyra~~--~G~~l~l~LG~Shpv~~~iP~gi~v~v~~~t~I~v~G~Dkq~ 139 (177)
T 1rl6_A 67 TRSLLANMV-----EGVSKGYEKALELVGVGYRASK--QGKKLVLSVGYSHPVEIEPEEGLEIEVPSQTKIIVKGADKQR 139 (177)
T ss_dssp HHHHHHHHH-----HHHHTCEEEEEEEESTTCEEEE--ETTEEEEESSSSSCEEECCCTTEEEEEEETTEEEEEESCHHH
T ss_pred HHHHHhCEE-----EeEcCCcEEEEEEEeeceEEEe--cCCEEEEEecCCccEEEeCCCCcEEEECCCCEEEEEeCCHHH
Confidence 457888888 9999999999999999999997 899999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhccCCCCCCCCCceeecceEEEecCCccc
Q 046142 94 VHQFAASVRSRKPPDPFKGKGIMCADEVIKKKVGKKK 130 (132)
Q Consensus 94 VgqfAa~Ir~~r~pepYKGKGI~~~~E~I~~K~gKk~ 130 (132)
|+||||+||+||||||||||||+|.||+|+||+||++
T Consensus 140 Vgq~AA~Ir~~R~PepYKGKGI~y~~E~i~~K~gK~~ 176 (177)
T 1rl6_A 140 VGELAANIRAVRPPEPYKGKGIRYEGELVRLKEGKTG 176 (177)
T ss_dssp HHHHHHHHHTTSCCCTTTCCEEEETTCCCCC------
T ss_pred HHHHHHHHhccCCCCCcCCCcEeECCeEEEEcCccCC
Confidence 9999999999999999999999999999999999985
No 2
>1nkw_E 50S ribosomal protein L6; ribosome, large subunit, X- RAY structure, peptidyl-transferase, peptide bond formation; 3.10A {Deinococcus radiodurans} SCOP: i.1.1.2 PDB: 1sm1_E*
Probab=100.00 E-value=1.1e-47 Score=303.58 Aligned_cols=110 Identities=30% Similarity=0.490 Sum_probs=106.3
Q ss_pred hHHHHhhhhhhhhhccccceEEEEEEEEEEeeEEEeccCCEEEEEeccceeeeeeCCCCcEEEecCCeEEEEEecCHHHH
Q 046142 15 LNHMSNLCDKFTLTWMEAKFLRFLKIVGVGYKARAEAEGRLLYLKLGYVHDVELTVPSAVRIFCLKNNVVCCCGLDKHRV 94 (132)
Q Consensus 15 ~~h~~n~~~~~~i~Gv~~gf~~~L~lvGvGYra~i~~~g~~L~l~LGySH~i~~~IP~~V~v~v~~~t~I~l~GiDKq~V 94 (132)
-+|++||+ .||++||+++|+|+|+||||++ +|+.|.|+||||||+.++||+||+|+++++|+|+|+|+|||.|
T Consensus 96 rslI~NMI-----~GVt~Gf~kkLelvGvGYra~~--~G~~L~L~LG~SHpv~~~iP~GI~v~v~~~t~Iiv~GiDKq~V 168 (212)
T 1nkw_E 96 RTLVANAV-----KGVSDGYTINLELRGVGFRAKL--TGKALEMNIGYSHPVIIEPPAGVTFAVPEPTRIDVSGIDKQLV 168 (212)
T ss_pred HHHhhCEE-----EeeccCeEEEEEEeeeeeEEEc--CCCEEEEEccCCccEEEECCCCeEEEeCCCCEEEEEeCCHHHH
Confidence 47888888 9999999999999999999997 8999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhccCCCCCCCCCceeecceEEEecCCcccC
Q 046142 95 HQFAASVRSRKPPDPFKGKGIMCADEVIKKKVGKKKS 131 (132)
Q Consensus 95 gqfAa~Ir~~r~pepYKGKGI~~~~E~I~~K~gKk~~ 131 (132)
|||||+||+||+|||||||||+|.||+|++|+||++|
T Consensus 169 Gq~AA~IR~~R~PEPYKGKGIry~~E~I~rK~gK~~k 205 (212)
T 1nkw_E 169 GQVAANVRKVRKPDAYHGKGVRFVGEQIALKAGKAGA 205 (212)
T ss_pred HHHHHHHhccCCCCCcCCCcEeECCeEEEEcCccccC
Confidence 9999999999999999999999999999999999865
No 3
>3r8s_G 50S ribosomal protein L6; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1p85_E 1p86_E 2awb_G 2aw4_G 2i2v_G 2j28_G 2i2t_G* 2qao_G* 2qba_G* 2qbc_G* 2qbe_G 2qbg_G 2qbi_G* 2qbk_G* 2qov_G 2qox_G 2qoz_G* 2qp1_G* 2rdo_G 2vhm_G ...
Probab=100.00 E-value=9.3e-48 Score=296.54 Aligned_cols=111 Identities=34% Similarity=0.625 Sum_probs=107.0
Q ss_pred chhHHHHhhhhhhhhhccccceEEEEEEEEEEeeEEEeccCCEEEEEeccceeeeeeCCCCcEEEecCCeEEEEEecCHH
Q 046142 13 DALNHMSNLCDKFTLTWMEAKFLRFLKIVGVGYKARAEAEGRLLYLKLGYVHDVELTVPSAVRIFCLKNNVVCCCGLDKH 92 (132)
Q Consensus 13 ~~~~h~~n~~~~~~i~Gv~~gf~~~L~lvGvGYra~i~~~g~~L~l~LGySH~i~~~IP~~V~v~v~~~t~I~l~GiDKq 92 (132)
+--+|++||+ .||++||+++|+++|+||||++ +|+.|.|+||||||+.++||+||+++++++|+|+|+|+|+|
T Consensus 66 t~rsli~NmI-----~GVt~Gf~~kL~lvgvgyra~~--~g~~l~l~LG~sh~v~~~ip~gv~v~v~~~t~Iil~G~Dke 138 (176)
T 3r8s_G 66 TARALLNSMV-----IGVTEGFTKKLQLVGVGYRAAV--KGNVINLSLGFSHPVDHQLPAGITAECPTQTEIVLKGADKQ 138 (176)
T ss_dssp HHHHHHHHTT-----THHHHCEEECEEEESTTCEEEC--SSSEEEEECSSSSCEEEECCTTCEEEEEETTEEEEEESCHH
T ss_pred HHHHHHHhHh-----hhcccCeEEEEEEeeeeeEEEe--CCCEEEEEecCCeeEEEECCCCeEEEECCCCEEEEEECcHH
Confidence 3468899999 9999999999999999999997 89999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhccCCCCCCCCCceeecceEEEecCCccc
Q 046142 93 RVHQFAASVRSRKPPDPFKGKGIMCADEVIKKKVGKKK 130 (132)
Q Consensus 93 ~VgqfAa~Ir~~r~pepYKGKGI~~~~E~I~~K~gKk~ 130 (132)
.|+||||+||+||||||||||||+|.||+|+||+|||+
T Consensus 139 ~Vgq~AA~Ir~~R~PepYKGKGI~y~~E~i~~K~gKkk 176 (176)
T 3r8s_G 139 VIGQVAADLRAYRRPEPYKGKGVRYADEVVRTKEAKKK 176 (176)
T ss_dssp HHHHHHHHHHHTTCCCSSSCCEEEESSCCCCCCCCCCC
T ss_pred HHHHHHHHhhccCCCCCccCCceeECCeEEEeccccCC
Confidence 99999999999999999999999999999999999985
No 4
>3v2d_H 50S ribosomal protein L6; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 1vsp_F 2hgj_H 2hgq_H 2hgu_H 1vsa_F 2j03_H 2jl6_H 2jl8_H 2v47_H 2v49_H 2wdi_H 2wdj_H 2wdl_H 2wdn_H 2wh2_H 2wh4_H 2wrj_H 2wrl_H 2wro_H 2wrr_H ...
Probab=100.00 E-value=2.5e-47 Score=295.02 Aligned_cols=112 Identities=30% Similarity=0.474 Sum_probs=105.5
Q ss_pred chhHHHHhhhhhhhhhccccceEEEEEEEEEEeeEEEeccCCEEEEEeccceeeeeeCCCCcEEEecCCeEEEEEecCHH
Q 046142 13 DALNHMSNLCDKFTLTWMEAKFLRFLKIVGVGYKARAEAEGRLLYLKLGYVHDVELTVPSAVRIFCLKNNVVCCCGLDKH 92 (132)
Q Consensus 13 ~~~~h~~n~~~~~~i~Gv~~gf~~~L~lvGvGYra~i~~~g~~L~l~LGySH~i~~~IP~~V~v~v~~~t~I~l~GiDKq 92 (132)
+--+|++||+ .||++||+++|+++|+||||++ +|+.|.|+||||||+.++||+||+++++++|+|+|+|+|+|
T Consensus 67 t~rsli~NmI-----~GVt~Gf~~kL~lvgvgyra~~--~g~~l~l~LG~sh~v~~~ip~gv~v~v~~~t~Iil~G~Dke 139 (180)
T 3v2d_H 67 LTRTLIANAV-----KGVSEGYSKELLIKGIGYRARL--VGRALELTVGFSHPVVVEPPEGITFEVPEPTRVRVSGIDKQ 139 (180)
T ss_dssp HHHHHHHHHH-----HHHHTCEEEEEEEESTTCEEEE--ETTEEEEECSSSSCEEECCCTTCEEECSSTTEEEEEESCHH
T ss_pred HHHHHHhhhE-----EeecCCcEEEEEEEEEeeEEEE--CCCEEEEEecCCeeEEEECCCCeEEEECCCCEEEEEECcHH
Confidence 3457899998 9999999999999999999988 89999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhccCCCCCCCCCceeecceEEEecCCcccC
Q 046142 93 RVHQFAASVRSRKPPDPFKGKGIMCADEVIKKKVGKKKS 131 (132)
Q Consensus 93 ~VgqfAa~Ir~~r~pepYKGKGI~~~~E~I~~K~gKk~~ 131 (132)
.|+||||+||++|+|||||||||+|+||+|++|+||++|
T Consensus 140 ~Vgq~AA~Ir~~r~PepYKGKGIry~~e~I~~K~gK~~~ 178 (180)
T 3v2d_H 140 KVGQVAANIRAIRKPSAYHEKGIYYAGEPVRLKPGKAGA 178 (180)
T ss_dssp HHHHHHHHHHHHTCCCSSSSCEEEETTCCCCCCCCC---
T ss_pred HHHHHHHHhcccCCCCCcCCCcccCCCEEEEEeCccccC
Confidence 999999999999999999999999999999999999864
No 5
>2zjr_E 50S ribosomal protein L6; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: d.141.1.1 d.141.1.1 PDB: 1nwx_E* 1xbp_E* 2zjp_E* 2zjq_E 1nwy_E 3cf5_E* 3dll_E* 3pio_E* 3pip_E* 1pnu_E 1pny_E 1vor_H 1vou_H 1vow_H 1voy_H 1vp0_H
Probab=100.00 E-value=1.6e-48 Score=302.97 Aligned_cols=111 Identities=30% Similarity=0.487 Sum_probs=104.6
Q ss_pred hhHHHHhhhhhhhhhccccceEEEEEEEEEEeeEEEeccCCEEEEEeccceeeeeeCCCCcEEEecCCeEEEEEecCHHH
Q 046142 14 ALNHMSNLCDKFTLTWMEAKFLRFLKIVGVGYKARAEAEGRLLYLKLGYVHDVELTVPSAVRIFCLKNNVVCCCGLDKHR 93 (132)
Q Consensus 14 ~~~h~~n~~~~~~i~Gv~~gf~~~L~lvGvGYra~i~~~g~~L~l~LGySH~i~~~IP~~V~v~v~~~t~I~l~GiDKq~ 93 (132)
--+|++||+ .||++||+++|+|+|+||||++ +|+.|.|+||||||+.++||+||+++++++|+|+|+|+|||.
T Consensus 68 ~rslI~NmI-----~GVt~Gf~kkL~lvGvGYra~~--~G~~l~l~LG~Shpv~~~iP~gI~v~v~~~t~I~l~G~DKq~ 140 (185)
T 2zjr_E 68 TRTLVANAV-----KGVSDGYTINLELRGVGFRAKL--TGKALEMNIGYSHPVIIEPPAGVTFAVPEPTRIDVSGIDKQL 140 (185)
T ss_dssp HHHHHHHHH-----HHHHHCEEEEEECBSTTCCCCC--BTTBCBCCSSCSSCCBCCCCTTEEEECSSTTEEEEEESSHHH
T ss_pred HHHHhhcEE-----eeeccCcEEEEEEeeeccEEEE--cCCEEEEEeeCCccEEEECCCCeEEEECCCCEEEEEecCHHH
Confidence 346888888 9999999999999999999997 899999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhccCCCCCCCCCceeecceEEEecCCcccC
Q 046142 94 VHQFAASVRSRKPPDPFKGKGIMCADEVIKKKVGKKKS 131 (132)
Q Consensus 94 VgqfAa~Ir~~r~pepYKGKGI~~~~E~I~~K~gKk~~ 131 (132)
|+||||+||+||||||||||||+|.||+|+||+||++|
T Consensus 141 Vgq~AA~Ir~~R~PepYKGKGI~y~~E~i~~K~gK~~k 178 (185)
T 2zjr_E 141 VGQVAANVRKVRKPDAYHGKGVRFVGEQIALKAGKAGA 178 (185)
T ss_dssp HHHHHHHHHHHTCCCTTTCCBCCCSSCCCCCCCCC---
T ss_pred HHHHHHHHhccCCCCCcCCCcEeECCeEEEEcCccccC
Confidence 99999999999999999999999999999999999865
No 6
>3bbo_I Ribosomal protein L6; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=100.00 E-value=8.4e-48 Score=306.31 Aligned_cols=110 Identities=35% Similarity=0.692 Sum_probs=105.7
Q ss_pred hHHHHhhhhhhhhhccccceEEEEEEEEEEeeEEEeccCCEEEEEeccceeeeeeCCCCcEEEecCCeEEEEEecCHHHH
Q 046142 15 LNHMSNLCDKFTLTWMEAKFLRFLKIVGVGYKARAEAEGRLLYLKLGYVHDVELTVPSAVRIFCLKNNVVCCCGLDKHRV 94 (132)
Q Consensus 15 ~~h~~n~~~~~~i~Gv~~gf~~~L~lvGvGYra~i~~~g~~L~l~LGySH~i~~~IP~~V~v~v~~~t~I~l~GiDKq~V 94 (132)
-+|++||+ .||++||+++|+|+|+||||++ +|+.|.|+||||||+.++||+||+|+++++|+|+|+|+|||.|
T Consensus 112 rslI~NMI-----~GVt~Gf~kkLelvGvGYra~~--~G~~L~L~LG~SHpv~~~iP~GI~v~v~~~t~Iii~GiDKq~V 184 (223)
T 3bbo_I 112 RTLTDNMV-----VGVSKGFEKKLILVGVGYRATV--DGKELVLNLGFSHPVKMQIPDSLKVKVEENTRITVSGYDKSEI 184 (223)
T ss_dssp TTTTTHHH-----HHTTTCEEECEECCSTTCCEEE--CSSEEEECSSCSSCEEEECCSSEEEECSSTTBCEEEESSSHHH
T ss_pred HHHhhcEE-----EeeccCcEEEEEEeeeceEEEe--cCCEEEEEeeCCccEEEECCCCeEEEeCCCCEEEEEeCCHHHH
Confidence 46778888 9999999999999999999997 8999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhccCCCCCCCCCceeecceEEEecCCcccC
Q 046142 95 HQFAASVRSRKPPDPFKGKGIMCADEVIKKKVGKKKS 131 (132)
Q Consensus 95 gqfAa~Ir~~r~pepYKGKGI~~~~E~I~~K~gKk~~ 131 (132)
|||||+||+||||||||||||+|.||+|++|+||++|
T Consensus 185 gq~AA~IR~~R~PEPYKGKGI~y~~E~I~rK~gK~~k 221 (223)
T 3bbo_I 185 GQFAATVRKWRPPEPYKGKGVKYSDEIVRRKEGKAGK 221 (223)
T ss_dssp HHHHHHTTSSSCCCTTTCCSCEETTCCCCCCCCCCSC
T ss_pred HHHHHHHhccCCCCCcCCCcEeECCeEEEEecccccc
Confidence 9999999999999999999999999999999999853
No 7
>1vq8_E 50S ribosomal protein L6P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.141.1.1 d.141.1.1 PDB: 1vq4_E* 1vq5_E* 1vq6_E* 1vq7_E* 1s72_E* 1vq9_E* 1vqk_E* 1vql_E* 1vqm_E* 1vqn_E* 1vqo_E* 1vqp_E* 1yhq_E* 1yi2_E* 1yij_E* 1yit_E* 1yj9_E* 1yjn_E* 1yjw_E* 2otj_E* ...
Probab=100.00 E-value=6e-36 Score=231.20 Aligned_cols=103 Identities=16% Similarity=0.132 Sum_probs=97.2
Q ss_pred chhHHHHhhhhhhhhhccccceEEEEEEEEEEe--eEEEeccCCEEEE--EeccceeeeeeCCCCcEEEecCCeEEEEEe
Q 046142 13 DALNHMSNLCDKFTLTWMEAKFLRFLKIVGVGY--KARAEAEGRLLYL--KLGYVHDVELTVPSAVRIFCLKNNVVCCCG 88 (132)
Q Consensus 13 ~~~~h~~n~~~~~~i~Gv~~gf~~~L~lvGvGY--ra~i~~~g~~L~l--~LGySH~i~~~IP~~V~v~v~~~t~I~l~G 88 (132)
+--+|++||+ .||++||+++|+++|+|| ||++ +|+.|.| +||||||+.++||+||++++++ |+|+|+|
T Consensus 65 t~rsli~Nmi-----~GVt~Gf~~~L~ivGvGypira~~--~g~~l~l~N~LG~shpv~~~ip~gi~v~v~~-~~I~v~G 136 (178)
T 1vq8_E 65 TFQSHIENMF-----HGVTEGWEYGMEVFYSHFPMQVNV--EGDEVVIENFLGEKAPRRTTIHGDTDVEIDG-EELTVSG 136 (178)
T ss_dssp HHHHHHHHHH-----HHHHTCEEEEEEEECSSSCCEEEE--ETTEEEEESGGGCSSCEEEECCTTCEEEEET-TEEEEEE
T ss_pred HHHHHHcCEE-----EEEccCeEEEEEEEeeCCceEEEE--cCCEEEEEccccccccEEEeCCCCeEEEEeC-CEEEEEE
Confidence 3457889998 999999999999999999 7877 8999999 9999999999999999999999 8999999
Q ss_pred cCHHHHHHHHHHhhccCCCCCCCCCce--eecceEEEecC
Q 046142 89 LDKHRVHQFAASVRSRKPPDPFKGKGI--MCADEVIKKKV 126 (132)
Q Consensus 89 iDKq~VgqfAa~Ir~~r~pepYKGKGI--~~~~E~I~~K~ 126 (132)
+|||.||||||+||++|+| ||||| |+||++|..|.
T Consensus 137 ~Dkq~Vgq~AA~Ir~~r~p---KGKGIr~F~DGiyi~~k~ 173 (178)
T 1vq8_E 137 PDIEAVGQTAADIEQLTRI---NDKDVRVFQDGVYITRKP 173 (178)
T ss_dssp SCHHHHHHHHHHHHHTTCC---SSSCTTTCCCEEEEEECC
T ss_pred CCHHHHHHHHHHHhccCCC---CCCceeEEECCEEEEecc
Confidence 9999999999999999999 99998 88999999884
No 8
>3j21_F 50S ribosomal protein L6P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=99.98 E-value=8.3e-33 Score=214.49 Aligned_cols=108 Identities=19% Similarity=0.195 Sum_probs=97.7
Q ss_pred chhHHHHhhhhhhhhhccccceEEEEEEEEEEeeEEEeccCCEEEEE--eccceeeeeeCCCCcEEEecCCeEEEEEecC
Q 046142 13 DALNHMSNLCDKFTLTWMEAKFLRFLKIVGVGYKARAEAEGRLLYLK--LGYVHDVELTVPSAVRIFCLKNNVVCCCGLD 90 (132)
Q Consensus 13 ~~~~h~~n~~~~~~i~Gv~~gf~~~L~lvGvGYra~i~~~g~~L~l~--LGySH~i~~~IP~~V~v~v~~~t~I~l~GiD 90 (132)
+--+|++||+ .||++||+++|+++|+|||+....+|+.|.|. ||||||+.++||+||+++++++ +|+|+|+|
T Consensus 70 t~rsli~NmI-----~GVt~Gf~~kL~lvgvgypira~~~g~~l~l~n~LG~sh~v~~~ip~gv~v~v~~~-~Iil~G~D 143 (184)
T 3j21_F 70 TFAAHIRNMI-----KGVTEGFTYKLKVVYSHFPISVKVQGDEVIIENFLGEKAPRKAKILPGVTVKVRGQ-EIIVEGID 143 (184)
T ss_dssp HHHHHHHHHH-----HHHHTCEEEEEEEECSSSCCEEEEETTEEEEECGGGCSSCEEEECCTTEEEEEETT-EEEEEESC
T ss_pred HHHHHHHhhh-----eeeccCeEEEEEEEEecccceEEEcCCEEEEEecCCccccEEEECCCCeEEEecCC-EEEEEECC
Confidence 3457899999 99999999999999999944444489999885 9999999999999999999997 99999999
Q ss_pred HHHHHHHHHHhhccCCCCCCCCCceee--cceEEEecCCcc
Q 046142 91 KHRVHQFAASVRSRKPPDPFKGKGIMC--ADEVIKKKVGKK 129 (132)
Q Consensus 91 Kq~VgqfAa~Ir~~r~pepYKGKGI~~--~~E~I~~K~gKk 129 (132)
||.|+||||+||++++ ||||+||+ ||.||..|.||.
T Consensus 144 ke~Vgq~AA~Ir~~~~---vK~KDiR~F~DGiyv~ek~~~~ 181 (184)
T 3j21_F 144 KEAVGQTAANIEQATR---ITKWDRRIFQDGIYIVEKAGKP 181 (184)
T ss_dssp HHHHHHHHHHHHHHHC---CCSSCSSSCCCEEEESCSSSCC
T ss_pred HHHHHHHHHHHhhccc---cCCCcccEeeCCEEEEecCccc
Confidence 9999999999999998 89999876 899999998763
No 9
>2zkr_e 60S ribosomal protein L9; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=99.97 E-value=2.6e-32 Score=212.80 Aligned_cols=105 Identities=17% Similarity=0.146 Sum_probs=95.9
Q ss_pred chhHHHHhhhhhhhhhccccceEEEEEEEEEEeeEE--EeccCCEEEE--EeccceeeeeeCCCCcEEEecCC--eEEEE
Q 046142 13 DALNHMSNLCDKFTLTWMEAKFLRFLKIVGVGYKAR--AEAEGRLLYL--KLGYVHDVELTVPSAVRIFCLKN--NVVCC 86 (132)
Q Consensus 13 ~~~~h~~n~~~~~~i~Gv~~gf~~~L~lvGvGYra~--i~~~g~~L~l--~LGySH~i~~~IP~~V~v~v~~~--t~I~l 86 (132)
+--+|++||+ .||++||+++|+|+|+||||+ ++.+|+.|.| +||||||+.++||+||+++++++ |+|+|
T Consensus 72 t~rsli~NmI-----~GVt~Gf~~~L~lvGvGyra~v~~e~~g~~l~l~N~LG~Sh~v~~~iP~gv~v~v~~~~~t~I~v 146 (192)
T 2zkr_e 72 TICSHVQNMI-----KGVTLGFRYKMRSVYAHFPINVVIQENGSLVEIRNFLGEKYIRRVRMRPGVACSVSQAQKDELIL 146 (192)
T ss_dssp HHHHHHHHHH-----HHHHTCEEEEEEEECSSSCCEEEECTTCSEEEEESGGGCSSCEEEECCSSCEEEECSSCSSEEEE
T ss_pred HHHHHHhCEE-----EeeccCcEEEEEEEEecceeEEEEccCCCEEEEeCcCCCcccEEeeCCCCeEEEEcCCCCCEEEE
Confidence 3457888888 999999999999999999998 5557899999 89999999999999999999987 99999
Q ss_pred EecCHHHHHHHHHHhhccCCCCCCCCCce--eecceEEEec
Q 046142 87 CGLDKHRVHQFAASVRSRKPPDPFKGKGI--MCADEVIKKK 125 (132)
Q Consensus 87 ~GiDKq~VgqfAa~Ir~~r~pepYKGKGI--~~~~E~I~~K 125 (132)
+|+|||.||||||+||+++++ |+|++ |.||-|+..|
T Consensus 147 ~GiDKq~Vgq~AA~IR~~~~v---k~kD~R~F~Dgiyv~~k 184 (192)
T 2zkr_e 147 EGNDIELVSNSAALIQQATTV---KNKDIRKFLDGIYVSEK 184 (192)
T ss_dssp EESCHHHHHHHHHHHHHHTCC---SSSCTTTCCCEEEEEEC
T ss_pred EeCCHHHHHHHHHHHHhhCcC---CCCCccEeecCEEEEEe
Confidence 999999999999999999999 77774 5689998777
No 10
>3iz5_F 60S ribosomal protein L9 (L6P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_F
Probab=99.96 E-value=4.1e-30 Score=200.22 Aligned_cols=106 Identities=19% Similarity=0.196 Sum_probs=95.0
Q ss_pred chhHHHHhhhhhhhhhccccceEEEEEEEEEEeeEEE--eccCCEEEEE--eccceeeeeeCCCCcEEEecCC--eEEEE
Q 046142 13 DALNHMSNLCDKFTLTWMEAKFLRFLKIVGVGYKARA--EAEGRLLYLK--LGYVHDVELTVPSAVRIFCLKN--NVVCC 86 (132)
Q Consensus 13 ~~~~h~~n~~~~~~i~Gv~~gf~~~L~lvGvGYra~i--~~~g~~L~l~--LGySH~i~~~IP~~V~v~v~~~--t~I~l 86 (132)
+--+|++||+ .||++||+++|+++|+||||++ ..+|+.|.|. ||||||+.++||+||+++++++ ++|+|
T Consensus 71 t~rsli~NmI-----~GVt~Gf~~kL~lvgvgyr~~~~i~~~G~~l~l~N~LG~sh~v~~~ip~GV~v~v~~~~k~eIil 145 (190)
T 3iz5_F 71 TAISHVQNLI-----TGVTKGYRYKMRFVYAHFPINASITNSNTAIEIRNFLGEKKVRKVDMLEGVTILRSEKVKDELVL 145 (190)
T ss_dssp HHHHHHHHHH-----HHHHTCEEEEEEEECSSSCCEEEEETTTTEEEEESGGGCSSCEEEECCSSCEEEECCTTTCEEEE
T ss_pred HHHHHHHhhe-----eeeccCEEEEEEEEEEcccceeEEccCCCEEEEEecCCccccEEEECCCCeEEEEcCCCCCEEEE
Confidence 3457899998 9999999999999999999765 5589999996 9999999999999999999998 69999
Q ss_pred EecCHHHHHHHHHHhhccCCCCCCCCCce--eecceEEEecC
Q 046142 87 CGLDKHRVHQFAASVRSRKPPDPFKGKGI--MCADEVIKKKV 126 (132)
Q Consensus 87 ~GiDKq~VgqfAa~Ir~~r~pepYKGKGI--~~~~E~I~~K~ 126 (132)
+|+|||.|+||||+||+.... |+|+| |.||-||..|.
T Consensus 146 ~G~Dke~Vgq~AA~Irq~~~v---k~kD~R~F~DGiyv~ek~ 184 (190)
T 3iz5_F 146 DGNDIELVSRSAALINQKCHV---KNKDIRKFLDGIYVSDKG 184 (190)
T ss_dssp EESCHHHHHHHHHHHHHHTCC---CSSCTTTCCCEEEECCCC
T ss_pred EECCHHHHHHHHHHHHhhccc---cCCcccEeecCEEEEeee
Confidence 999999999999999999874 78875 56899988763
No 11
>4a17_E RPL9, 60S ribosomal protein L9; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_E 4a1c_E 4a1e_E
Probab=99.96 E-value=8e-30 Score=198.30 Aligned_cols=106 Identities=17% Similarity=0.177 Sum_probs=94.9
Q ss_pred chhHHHHhhhhhhhhhccccceEEEEEEEEEEeeEEE--eccCCEEEEE--eccceeeeeeCCCCcEEEecCC--eEEEE
Q 046142 13 DALNHMSNLCDKFTLTWMEAKFLRFLKIVGVGYKARA--EAEGRLLYLK--LGYVHDVELTVPSAVRIFCLKN--NVVCC 86 (132)
Q Consensus 13 ~~~~h~~n~~~~~~i~Gv~~gf~~~L~lvGvGYra~i--~~~g~~L~l~--LGySH~i~~~IP~~V~v~v~~~--t~I~l 86 (132)
+--+|++||+ .||++||+++|+++|+||||++ ..+|+.|.|. ||||||+.++||+||+++++++ ++|+|
T Consensus 70 t~rsli~NmI-----~GVt~Gf~~kL~lvgvgyr~~~~v~~~G~~l~l~N~LG~sh~v~~~ip~gv~v~v~~~~k~eIil 144 (188)
T 4a17_E 70 SIASQIKNMI-----RGVTEGYKFKMKLAFAHFPIQEAVAKDGSSIEIKHFLGEKRIRRIQALPGVKISRKDEEKNTLTL 144 (188)
T ss_dssp HHHHHHHHHH-----HHHHSCEEEEEEEECSSSCCEEEECSSSCEEEEECGGGCCCEEEEECCTTCEEECCTTSSSEEEE
T ss_pred HHHHHHHhhe-----EeeccCeEEEEEEEEEcccceEEEccCCCEEEEEeccCCcccEEEECCCCeEEEECCCCCCEEEE
Confidence 3457899998 9999999999999999999765 4578999995 9999999999999999999998 89999
Q ss_pred EecCHHHHHHHHHHhhccCCCCCCCCCce--eecceEEEecC
Q 046142 87 CGLDKHRVHQFAASVRSRKPPDPFKGKGI--MCADEVIKKKV 126 (132)
Q Consensus 87 ~GiDKq~VgqfAa~Ir~~r~pepYKGKGI--~~~~E~I~~K~ 126 (132)
+|+|||.|+||||+||+.... |+|+| |.||-||..|.
T Consensus 145 ~G~Dke~Vgq~AA~Ir~~~~v---k~kD~R~F~DGiyv~ek~ 183 (188)
T 4a17_E 145 QGIDLNNVSQTCALIHQSCLV---KEKDIRQFLDGIYVSDKR 183 (188)
T ss_dssp EESCHHHHHHHHHHHHHHTCC---CSSCHHHHCCEEEEEEEE
T ss_pred EEcCHHHHHHHHHHHHhhccc---CCCcccEeecCeEEEEeE
Confidence 999999999999999999865 88885 56899988773
No 12
>3u5e_H L8, RP24, YL11, 60S ribosomal protein L9-A; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3izc_F 1s1i_H 3izs_F* 3j16_F 3o5h_I 3o58_I 3u5i_H 4b6a_H 3jyw_H
Probab=99.96 E-value=1.6e-29 Score=197.05 Aligned_cols=106 Identities=16% Similarity=0.150 Sum_probs=93.9
Q ss_pred chhHHHHhhhhhhhhhccccceEEEEEEEEEEeeE--EE--eccCCEEEEE--eccceeeeeeCCCCcEEEecCC--eEE
Q 046142 13 DALNHMSNLCDKFTLTWMEAKFLRFLKIVGVGYKA--RA--EAEGRLLYLK--LGYVHDVELTVPSAVRIFCLKN--NVV 84 (132)
Q Consensus 13 ~~~~h~~n~~~~~~i~Gv~~gf~~~L~lvGvGYra--~i--~~~g~~L~l~--LGySH~i~~~IP~~V~v~v~~~--t~I 84 (132)
+--+|++||+ .||++||+++|+++|+|||| ++ ..+|+.|.|+ ||||||+.++||+||+++++++ |+|
T Consensus 70 t~rsli~NmI-----~GVt~Gf~~kL~lvgvgyri~a~v~~~~~G~~l~l~n~LG~sh~v~~~ip~Gv~v~v~~~~kteI 144 (191)
T 3u5e_H 70 TVKSLVDNMI-----TGVTKGYKYKMRYVYAHFPINVNIVEKDGAKFIEVRNFLGDKKIRNVPVRDGVTIEFSTNVKDEI 144 (191)
T ss_dssp HHHHHHHHHH-----HHHHTCEEEEEEEECSSSCCEEEEECSSSCCEEEEECGGGCSSCEEEECCTTEEEEECTTSTTEE
T ss_pred HHHHHHHhhe-----eeeccCEEEEEEEEEEeeeEEEEEEEcCCCCEEEEEeccCCcccEEEECCCCEEEEECCCCCCEE
Confidence 3457899998 99999999999999999995 44 4488999995 9999999999999999999996 999
Q ss_pred EEEecCHHHHHHHHHHhhccCCCCCCCCCce--eecceEEEecC
Q 046142 85 CCCGLDKHRVHQFAASVRSRKPPDPFKGKGI--MCADEVIKKKV 126 (132)
Q Consensus 85 ~l~GiDKq~VgqfAa~Ir~~r~pepYKGKGI--~~~~E~I~~K~ 126 (132)
+|+|+|||.|+||||+||+.... |+|+| |.||-||..|.
T Consensus 145 il~G~Dke~Vgq~AA~Irq~~~v---k~kD~R~FlDGiyv~ek~ 185 (191)
T 3u5e_H 145 VLSGNSVEDVSQNAADLQQICRV---RNKDIRKFLDGIYVSHKG 185 (191)
T ss_dssp EEEESCHHHHHHHHHHHHHTTCC---CSSCTTTCCCEEEEEEEE
T ss_pred EEEECCHHHHHHHHHHHHhhccc---CCCcccEeecCeEEEEee
Confidence 99999999999999999999865 77774 66899998773
No 13
>2cql_A OK/SW-CL.103, 60S ribosomal protein L9; N-terminal domain, alpha and beta (A+B), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.141.1.1
Probab=81.17 E-value=0.26 Score=34.02 Aligned_cols=18 Identities=11% Similarity=-0.014 Sum_probs=15.0
Q ss_pred hhHHHHhhhhhhhhhccccceEE
Q 046142 14 ALNHMSNLCDKFTLTWMEAKFLR 36 (132)
Q Consensus 14 ~~~h~~n~~~~~~i~Gv~~gf~~ 36 (132)
--+|++||+ .||++||++
T Consensus 80 ~RslI~NMI-----~GVt~Gf~y 97 (100)
T 2cql_A 80 ICSHVQNMI-----KGVTLGSGP 97 (100)
T ss_dssp HHHHHHHHH-----HHHHTSCCS
T ss_pred HHHHHHhhh-----EeecCCEEE
Confidence 347889988 999999975
No 14
>2cql_A OK/SW-CL.103, 60S ribosomal protein L9; N-terminal domain, alpha and beta (A+B), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.141.1.1
Probab=78.43 E-value=1.6 Score=29.96 Aligned_cols=23 Identities=22% Similarity=0.238 Sum_probs=19.4
Q ss_pred eeeCCCCcEEEecCCeEEEEEecC
Q 046142 67 ELTVPSAVRIFCLKNNVVCCCGLD 90 (132)
Q Consensus 67 ~~~IP~~V~v~v~~~t~I~l~GiD 90 (132)
.++||+||+|++.+ +.|++.|.-
T Consensus 16 pI~IP~gV~V~i~~-~~VtVKGPk 38 (100)
T 2cql_A 16 TVDIPENVDITLKG-RTVIVKGPR 38 (100)
T ss_dssp EECCCSSCEEEEET-TEEEEEETT
T ss_pred cEEcCCCCEEEEeC-CEEEEECCC
Confidence 45899999999987 589999875
No 15
>1rl6_A Protein (ribosomal protein L6); RNA-binding protein, gentamicin resistance, alpha/beta protein; 2.00A {Geobacillus stearothermophilus} SCOP: d.141.1.1 d.141.1.1 PDB: 1giy_H 1ml5_h* 1c04_B 1yl3_H 2b66_H 2b9n_H 2b9p_H 1eg0_J 487d_J
Probab=59.93 E-value=6.7 Score=29.42 Aligned_cols=23 Identities=22% Similarity=0.338 Sum_probs=17.8
Q ss_pred eeeCCCCcEEEecCCeEEEEEecC
Q 046142 67 ELTVPSAVRIFCLKNNVVCCCGLD 90 (132)
Q Consensus 67 ~~~IP~~V~v~v~~~t~I~l~GiD 90 (132)
.+.||+||+|++.+ +.|+++|.-
T Consensus 7 pI~IP~gV~V~i~~-~~VtVkGpk 29 (177)
T 1rl6_A 7 PIEIPAGVTVTVNG-NTVTVKGPK 29 (177)
T ss_dssp CEECCTTCEEEEET-TEEEEEETT
T ss_pred ceEcCCCCEEEEeC-CEEEEECCC
Confidence 45789999998876 478888764
No 16
>1vq8_E 50S ribosomal protein L6P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.141.1.1 d.141.1.1 PDB: 1vq4_E* 1vq5_E* 1vq6_E* 1vq7_E* 1s72_E* 1vq9_E* 1vqk_E* 1vql_E* 1vqm_E* 1vqn_E* 1vqo_E* 1vqp_E* 1yhq_E* 1yi2_E* 1yij_E* 1yit_E* 1yj9_E* 1yjn_E* 1yjw_E* 2otj_E* ...
Probab=58.85 E-value=7.5 Score=29.28 Aligned_cols=23 Identities=22% Similarity=0.135 Sum_probs=18.8
Q ss_pred eeeCCCCcEEEecCCeEEEEEecC
Q 046142 67 ELTVPSAVRIFCLKNNVVCCCGLD 90 (132)
Q Consensus 67 ~~~IP~~V~v~v~~~t~I~l~GiD 90 (132)
.++||+||+|++.+ +.++++|.-
T Consensus 5 pI~IP~gV~v~i~~-~~vtVkGpk 27 (178)
T 1vq8_E 5 ELEIPEDVDAEQDH-LDITVEGDN 27 (178)
T ss_dssp EEECCTTCEEEEET-TEEEEEETT
T ss_pred cEEcCCCCEEEEeC-CEEEEECCC
Confidence 56899999999877 578888864
No 17
>3j21_F 50S ribosomal protein L6P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=57.96 E-value=7.8 Score=29.26 Aligned_cols=23 Identities=22% Similarity=0.248 Sum_probs=18.3
Q ss_pred eeeCCCCcEEEecCCeEEEEEecC
Q 046142 67 ELTVPSAVRIFCLKNNVVCCCGLD 90 (132)
Q Consensus 67 ~~~IP~~V~v~v~~~t~I~l~GiD 90 (132)
.++||+||+|++.+ +.++++|.-
T Consensus 10 ~I~IP~gV~v~i~~-~~V~VkGpk 32 (184)
T 3j21_F 10 EVEIPEGVEVTVEG-YKVKVKGPK 32 (184)
T ss_dssp EEECCSSCEEEESS-SEEEEECSS
T ss_pred EEeCCCCcEEEEeC-CEEEEEcCC
Confidence 46899999999876 578888764
No 18
>3u5e_H L8, RP24, YL11, 60S ribosomal protein L9-A; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3izc_F 1s1i_H 3izs_F* 3j16_F 3o5h_I 3o58_I 3u5i_H 4b6a_H 3jyw_H
Probab=57.47 E-value=8.1 Score=29.36 Aligned_cols=24 Identities=21% Similarity=0.321 Sum_probs=18.9
Q ss_pred eeeeCCCCcEEEecCCeEEEEEecC
Q 046142 66 VELTVPSAVRIFCLKNNVVCCCGLD 90 (132)
Q Consensus 66 i~~~IP~~V~v~v~~~t~I~l~GiD 90 (132)
..++||+||+|++.+ ..++++|.-
T Consensus 8 ~~I~IP~gV~v~i~~-~~V~VkGPk 31 (191)
T 3u5e_H 8 QQIEVPEGVTVSIKS-RIVKVVGPR 31 (191)
T ss_dssp EEEECCTTCEEEEET-TEEEEEETT
T ss_pred ccEECCCCcEEEEeC-CEEEEEcCC
Confidence 356899999999876 578888864
No 19
>2zkr_e 60S ribosomal protein L9; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=57.33 E-value=6.9 Score=29.72 Aligned_cols=23 Identities=22% Similarity=0.238 Sum_probs=17.9
Q ss_pred eeeCCCCcEEEecCCeEEEEEecC
Q 046142 67 ELTVPSAVRIFCLKNNVVCCCGLD 90 (132)
Q Consensus 67 ~~~IP~~V~v~v~~~t~I~l~GiD 90 (132)
.++||+||+|++.+ +.++++|.-
T Consensus 9 pI~IP~gV~V~i~~-~~VtVkGpk 31 (192)
T 2zkr_e 9 TVDIPENVDITLKG-RTVIVKGPR 31 (192)
T ss_dssp -CCCCTTCEEEEET-TEEEEEETT
T ss_pred cEEcCCCCEEEEeC-CEEEEECCC
Confidence 46899999999876 578888864
No 20
>3iz5_F 60S ribosomal protein L9 (L6P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_F
Probab=57.15 E-value=8.2 Score=29.28 Aligned_cols=24 Identities=21% Similarity=0.311 Sum_probs=18.7
Q ss_pred eeeeCCCCcEEEecCCeEEEEEecC
Q 046142 66 VELTVPSAVRIFCLKNNVVCCCGLD 90 (132)
Q Consensus 66 i~~~IP~~V~v~v~~~t~I~l~GiD 90 (132)
..+.||+||+|++.+ +.++++|.-
T Consensus 8 ~~I~IP~gV~v~i~~-~~V~VkGPk 31 (190)
T 3iz5_F 8 ETMEIPEGVTVQVAA-KVVTVEGPR 31 (190)
T ss_dssp EEEECCTTCEEEEET-TEEEEEETT
T ss_pred ccEECCCCCEEEEeC-CEEEEECCC
Confidence 356899999999876 577888864
No 21
>3v2d_H 50S ribosomal protein L6; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 1vsp_F 2hgj_H 2hgq_H 2hgu_H 1vsa_F 2j03_H 2jl6_H 2jl8_H 2v47_H 2v49_H 2wdi_H 2wdj_H 2wdl_H 2wdn_H 2wh2_H 2wh4_H 2wrj_H 2wrl_H 2wro_H 2wrr_H ...
Probab=57.01 E-value=7.6 Score=29.17 Aligned_cols=23 Identities=22% Similarity=0.228 Sum_probs=17.2
Q ss_pred eeeCCCCcEEEecCCeEEEEEecC
Q 046142 67 ELTVPSAVRIFCLKNNVVCCCGLD 90 (132)
Q Consensus 67 ~~~IP~~V~v~v~~~t~I~l~GiD 90 (132)
.+.||+||+|++.+ +.+++.|.-
T Consensus 8 pI~IP~gV~v~i~~-~~v~VkGpk 30 (180)
T 3v2d_H 8 PIPVPKGVSVEVAP-GRVKVKGPK 30 (180)
T ss_dssp CEECCTTCEEEEET-TEEEEECSS
T ss_pred eeeCCCCcEEEEeC-CEEEEEeCC
Confidence 35789999998876 477777753
No 22
>1nkw_E 50S ribosomal protein L6; ribosome, large subunit, X- RAY structure, peptidyl-transferase, peptide bond formation; 3.10A {Deinococcus radiodurans} SCOP: i.1.1.2 PDB: 1sm1_E*
Probab=55.27 E-value=7.8 Score=30.07 Aligned_cols=23 Identities=26% Similarity=0.325 Sum_probs=18.0
Q ss_pred eeeCCCCcEEEecCCeEEEEEecC
Q 046142 67 ELTVPSAVRIFCLKNNVVCCCGLD 90 (132)
Q Consensus 67 ~~~IP~~V~v~v~~~t~I~l~GiD 90 (132)
.+.||+||+|++.+ +.|+++|.-
T Consensus 35 pI~IP~gV~V~i~~-~~VtVKGPk 57 (212)
T 1nkw_E 35 PIAVPSGVTVNAQD-GVFKVKGPK 57 (212)
T ss_pred ceecCCCcEEEEeC-CEEEEECCC
Confidence 56889999998876 577788764
No 23
>4a17_E RPL9, 60S ribosomal protein L9; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_E 4a1c_E 4a1e_E
Probab=54.74 E-value=8.1 Score=29.26 Aligned_cols=24 Identities=29% Similarity=0.328 Sum_probs=18.9
Q ss_pred eeeeCCCCcEEEecCCeEEEEEecC
Q 046142 66 VELTVPSAVRIFCLKNNVVCCCGLD 90 (132)
Q Consensus 66 i~~~IP~~V~v~v~~~t~I~l~GiD 90 (132)
..++||+||+|++.+ +.++++|.-
T Consensus 8 ~~I~IP~gV~v~i~~-~~V~VkGPk 31 (188)
T 4a17_E 8 VNVPIPDKVTITAKQ-RVVEVKGPL 31 (188)
T ss_dssp EECCCCTTCEEEEET-TEEEEEETT
T ss_pred ccEECCCCcEEEEeC-CEEEEEcCC
Confidence 356899999999876 578888864
No 24
>3bbo_I Ribosomal protein L6; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=46.85 E-value=7.9 Score=30.24 Aligned_cols=23 Identities=26% Similarity=0.141 Sum_probs=19.2
Q ss_pred eeeCCCCcEEEecCCeEEEEEecC
Q 046142 67 ELTVPSAVRIFCLKNNVVCCCGLD 90 (132)
Q Consensus 67 ~~~IP~~V~v~v~~~t~I~l~GiD 90 (132)
.++||+||+|++.+ +.|+++|.-
T Consensus 50 pI~IP~gV~V~i~~-~~VtVKGPk 72 (223)
T 3bbo_I 50 PIAVPSNVTIALEG-QDLKVKGPL 72 (223)
T ss_dssp CCCCSTTSCEEESS-SEEEECCSS
T ss_pred ceecCCCCEEEEeC-CEEEEECCC
Confidence 46899999999977 588898875
No 25
>3r8s_G 50S ribosomal protein L6; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1p85_E 1p86_E 2awb_G 2aw4_G 2i2v_G 2j28_G 2i2t_G* 2qao_G* 2qba_G* 2qbc_G* 2qbe_G 2qbg_G 2qbi_G* 2qbk_G* 2qov_G 2qox_G 2qoz_G* 2qp1_G* 2rdo_G 2vhm_G ...
Probab=43.85 E-value=7.1 Score=29.23 Aligned_cols=21 Identities=24% Similarity=0.309 Sum_probs=14.2
Q ss_pred eeCCCCcEEEecCCeEEEEEec
Q 046142 68 LTVPSAVRIFCLKNNVVCCCGL 89 (132)
Q Consensus 68 ~~IP~~V~v~v~~~t~I~l~Gi 89 (132)
+.||+||+|++.+ +.+++.|.
T Consensus 8 I~IP~gV~v~i~~-~~V~VkGp 28 (176)
T 3r8s_G 8 VVVPAGVDVKING-QVITIKGK 28 (176)
T ss_dssp EECCTTCCCEESS-SEEECCBT
T ss_pred eeCCCCcEEEEeC-CEEEEEcC
Confidence 5678888887765 45666654
No 26
>1x4m_A FAR upstream element binding protein 1; KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.51.1.1
Probab=39.76 E-value=40 Score=21.89 Aligned_cols=30 Identities=17% Similarity=0.086 Sum_probs=22.0
Q ss_pred eEEEEEecCHHHHHHHHHHhhcc-CCCCCCCC
Q 046142 82 NVVCCCGLDKHRVHQFAASVRSR-KPPDPFKG 112 (132)
Q Consensus 82 t~I~l~GiDKq~VgqfAa~Ir~~-r~pepYKG 112 (132)
..++|+| +.+.|..-...|+.+ +.++.|-.
T Consensus 62 r~v~I~G-~~~~v~~A~~~I~~~i~~~~~~~~ 92 (94)
T 1x4m_A 62 KPLRITG-DPYKVQQAKEMVLELIRDQGSGPS 92 (94)
T ss_dssp EEEEEEE-CTTTHHHHHHHHHHHHCCCSSCSS
T ss_pred eEEEEEe-CHHHHHHHHHHHHHHHhccCCCCC
Confidence 3599999 888888777777765 66666644
No 27
>2zjr_E 50S ribosomal protein L6; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: d.141.1.1 d.141.1.1 PDB: 1nwx_E* 1xbp_E* 2zjp_E* 2zjq_E 1nwy_E 3cf5_E* 3dll_E* 3pio_E* 3pip_E* 1pnu_E 1pny_E 1vor_H 1vou_H 1vow_H 1voy_H 1vp0_H
Probab=38.22 E-value=7.4 Score=29.46 Aligned_cols=23 Identities=26% Similarity=0.325 Sum_probs=18.5
Q ss_pred eeeCCCCcEEEecCCeEEEEEecC
Q 046142 67 ELTVPSAVRIFCLKNNVVCCCGLD 90 (132)
Q Consensus 67 ~~~IP~~V~v~v~~~t~I~l~GiD 90 (132)
.++||+||+|++.+ +.|++.|.-
T Consensus 8 pI~IP~gV~V~i~~-~~VtVkGpk 30 (185)
T 2zjr_E 8 PIAVPSGVTVNAQD-GVFKVKGPK 30 (185)
T ss_dssp CBCCCTTCCEECCT-TCCEECCSS
T ss_pred ceecCCCCEEEEeC-CEEEEECCC
Confidence 46899999999876 578888865
No 28
>4fqn_A Malcavernin; helical domain, harmonin-homology domain, protein-protein interaction, HOMO-dimer, protein binding; 1.90A {Homo sapiens}
Probab=34.49 E-value=13 Score=25.70 Aligned_cols=18 Identities=28% Similarity=0.473 Sum_probs=15.8
Q ss_pred cCHHHHHHHHHHhhccCC
Q 046142 89 LDKHRVHQFAASVRSRKP 106 (132)
Q Consensus 89 iDKq~VgqfAa~Ir~~r~ 106 (132)
.+.+.+.|||+-||.||-
T Consensus 29 L~~~ElqqFA~Llr~YR~ 46 (98)
T 4fqn_A 29 LSSQEIQQFAALLHEYRN 46 (98)
T ss_dssp SCHHHHHHHHHHHHHHHT
T ss_pred cChHHHHHHHHHHHHHHc
Confidence 357899999999999986
No 29
>2opv_A KHSRP protein; KH domain, RNA binding protein, KSRP; NMR {Homo sapiens}
Probab=33.32 E-value=51 Score=20.84 Aligned_cols=20 Identities=25% Similarity=0.210 Sum_probs=16.0
Q ss_pred EEEEecCHHHHHHHHHHhhcc
Q 046142 84 VCCCGLDKHRVHQFAASVRSR 104 (132)
Q Consensus 84 I~l~GiDKq~VgqfAa~Ir~~ 104 (132)
+.|+| |.+.+..-...|+.+
T Consensus 63 v~I~G-~~~~v~~A~~~I~~i 82 (85)
T 2opv_A 63 LRIIG-DPYKVQQACEMVMDI 82 (85)
T ss_dssp EEEEE-CHHHHHHHHHHHHHH
T ss_pred EEEEe-CHHHHHHHHHHHHHH
Confidence 99999 999988777776643
No 30
>1vig_A Vigilin; RNA-binding protein, ribonucleoprotein; NMR {Homo sapiens} SCOP: d.51.1.1 PDB: 1vih_A
Probab=29.49 E-value=76 Score=19.42 Aligned_cols=31 Identities=13% Similarity=0.049 Sum_probs=20.8
Q ss_pred CcEEEecCCe----EEEEEecCHHHHHHHHHHhhcc
Q 046142 73 AVRIFCLKNN----VVCCCGLDKHRVHQFAASVRSR 104 (132)
Q Consensus 73 ~V~v~v~~~t----~I~l~GiDKq~VgqfAa~Ir~~ 104 (132)
|+++.++++. .++|+|.. +.+.+-.+.|+.+
T Consensus 35 g~~I~i~~~g~~~~~V~I~G~~-~~v~~A~~~I~~i 69 (71)
T 1vig_A 35 KVSVRIPPDSEKSNLIRIEGDP-QGVQQAKRELLEL 69 (71)
T ss_dssp CCEEECCCCCSSSEEEEEEESS-HHHHHHHHHHHHT
T ss_pred CCEEEECCCCCcccEEEEEcCH-HHHHHHHHHHHHH
Confidence 4555555544 99999994 7777766666654
No 31
>2hh2_A KH-type splicing regulatory protein; KH-RNA binding domain, RNA binding protein; NMR {Homo sapiens}
Probab=27.44 E-value=88 Score=20.77 Aligned_cols=22 Identities=5% Similarity=0.208 Sum_probs=18.4
Q ss_pred eEEEEEecCHHHHHHHHHHhhcc
Q 046142 82 NVVCCCGLDKHRVHQFAASVRSR 104 (132)
Q Consensus 82 t~I~l~GiDKq~VgqfAa~Ir~~ 104 (132)
..|+|+| +.+.|..-...|+.+
T Consensus 55 r~V~I~G-~~e~v~~A~~~I~~~ 76 (107)
T 2hh2_A 55 KLFIIRG-SPQQIDHAKQLIEEK 76 (107)
T ss_dssp EEEEEES-CHHHHHHHHHHHHHH
T ss_pred eEEEEEC-CHHHHHHHHHHHHHH
Confidence 5789999 999998888888776
No 32
>2ctj_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=25.47 E-value=58 Score=21.48 Aligned_cols=31 Identities=16% Similarity=0.101 Sum_probs=21.9
Q ss_pred CcEEEecCCe----EEEEEecCHHHHHHHHHHhhcc
Q 046142 73 AVRIFCLKNN----VVCCCGLDKHRVHQFAASVRSR 104 (132)
Q Consensus 73 ~V~v~v~~~t----~I~l~GiDKq~VgqfAa~Ir~~ 104 (132)
++++.++++. .++|+|.+. .|.+--+.|+.+
T Consensus 48 gv~I~i~~~g~~~~~V~I~G~~~-~v~~A~~~I~~i 82 (95)
T 2ctj_A 48 GVHIHFPVEGSGSDTVVIRGPSS-DVEKAKKQLLHL 82 (95)
T ss_dssp SCEEECCCTTTTCCEEEEESCHH-HHHHHHHHHHHH
T ss_pred CCEEEeCCCCCCcceEEEEcCHH-HHHHHHHHHHHH
Confidence 4555555544 999999987 777777777654
No 33
>4en6_A Hemagglutinin components HA-22/23/53; carbohydrate/sugar binding, sugar binding protein; HET: SIA GAL BGC; 2.56A {Clostridium botulinum} PDB: 4en7_A* 4en8_A* 4en9_A* 2z5a_A 2zoe_A* 2zs6_A
Probab=24.58 E-value=1.7e+02 Score=22.43 Aligned_cols=38 Identities=24% Similarity=0.539 Sum_probs=24.6
Q ss_pred EEEEEEEEeeEEEeccCC-----EEEE-EeccceeeeeeCCCCc
Q 046142 37 FLKIVGVGYKARAEAEGR-----LLYL-KLGYVHDVELTVPSAV 74 (132)
Q Consensus 37 ~L~lvGvGYra~i~~~g~-----~L~l-~LGySH~i~~~IP~~V 74 (132)
++.--..-|-+--..+|+ .+.+ +|||+..+.++-|+.+
T Consensus 137 k~y~TY~KYEiIk~~~g~I~e~A~~YvPSLGy~k~ie~~s~e~i 180 (224)
T 4en6_A 137 YLQYTYIRYEIIKVLQNTVTERAVLYVPSLGYVKSIEFNSEEQI 180 (224)
T ss_dssp EEEEEEEEEEEEEESSSBEEEEEEEEEEEEEEEEEEEECSSCCC
T ss_pred eehhhhhhhhhhhhhcCccccceeEEccccceEEEeecCChhhc
Confidence 344444455544333443 4555 9999999999999875
No 34
>2ctk_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=23.58 E-value=77 Score=21.08 Aligned_cols=30 Identities=17% Similarity=0.262 Sum_probs=20.4
Q ss_pred CcEEEecCCe----EEEEEecCHHHHHHHHHHhhc
Q 046142 73 AVRIFCLKNN----VVCCCGLDKHRVHQFAASVRS 103 (132)
Q Consensus 73 ~V~v~v~~~t----~I~l~GiDKq~VgqfAa~Ir~ 103 (132)
|+++.++++. .|+|+|.+ +.+.+--..|+.
T Consensus 47 g~~I~I~~~g~~~~~V~I~G~~-e~v~~A~~~I~~ 80 (104)
T 2ctk_A 47 EVNIHVPAPELQSDIIAITGLA-ANLDRAKAGLLE 80 (104)
T ss_dssp CCEEECCCTTTTCCEEEEEECH-HHHHHHHHHHHH
T ss_pred CCEEEecCCCCCcceEEEEcCH-HHHHHHHHHHHH
Confidence 5666666554 99999997 777665555544
No 35
>3lyw_A YBBR family protein; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 1.90A {Desulfitobacterium hafniense} PDB: 2kpu_A 2l5n_A
Probab=22.82 E-value=67 Score=21.37 Aligned_cols=25 Identities=16% Similarity=0.151 Sum_probs=20.0
Q ss_pred ceeeeeeCCCCcEEEecCCeEEEEE
Q 046142 63 VHDVELTVPSAVRIFCLKNNVVCCC 87 (132)
Q Consensus 63 SH~i~~~IP~~V~v~v~~~t~I~l~ 87 (132)
+-++.+.+|.|+++.--+|..|.+.
T Consensus 58 ~~~V~v~~P~G~~lv~vsP~~V~~~ 82 (90)
T 3lyw_A 58 DYEVKVEPIPNIKIVEISPRVVTLQ 82 (90)
T ss_dssp EEECEECCCTTEEEEEEESSEEEEE
T ss_pred eEEEEEECCCCCEEEEEccceEEEE
Confidence 4568899999999887788777764
Done!