RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= 046142
         (132 letters)



>d2qamg2 d.141.1.1 (G:82-176) Ribosomal protein L6 {Escherichia coli
           [TaxId: 562]}
          Length = 95

 Score =  102 bits (256), Expect = 3e-30
 Identities = 38/97 (39%), Positives = 59/97 (60%), Gaps = 2/97 (2%)

Query: 34  FLRFLKIVGVGYKARAEAEGRLLYLKLGYVHDVELTVPSAVRIFCLKNNVVCCCGLDKHR 93
           F + L++VGVGY  RA  +G ++ L LG+ H V+  +P+ +   C     +   G DK  
Sbjct: 1   FTKKLQLVGVGY--RAAVKGNVINLSLGFSHPVDHQLPAGITAECPTQTEIVLKGADKQV 58

Query: 94  VHQFAASVRSRKPPDPFKGKGIMCADEVIKKKVGKKK 130
           + Q AA +R+ + P+P+KGKG+  ADEV++ K  KKK
Sbjct: 59  IGQVAADLRAYRRPEPYKGKGVRYADEVVRTKEAKKK 95


>d1rl6a2 d.141.1.1 (A:82-170) Ribosomal protein L6 {Bacillus
           stearothermophilus [TaxId: 1422]}
          Length = 89

 Score = 94.8 bits (236), Expect = 2e-27
 Identities = 34/90 (37%), Positives = 54/90 (60%), Gaps = 2/90 (2%)

Query: 34  FLRFLKIVGVGYKARAEAEGRLLYLKLGYVHDVELTVPSAVRIFCLKNNVVCCCGLDKHR 93
           + + L++VGVGY  RA  +G+ L L +GY H VE+     + I       +   G DK R
Sbjct: 1   YEKALELVGVGY--RASKQGKKLVLSVGYSHPVEIEPEEGLEIEVPSQTKIIVKGADKQR 58

Query: 94  VHQFAASVRSRKPPDPFKGKGIMCADEVIK 123
           V + AA++R+ +PP+P+KGKGI    E+++
Sbjct: 59  VGELAANIRAVRPPEPYKGKGIRYEGELVR 88


>d2j01h2 d.141.1.1 (H:83-171) Ribosomal protein L6 {Thermus
           thermophilus [TaxId: 274]}
          Length = 89

 Score = 94.7 bits (236), Expect = 2e-27
 Identities = 30/90 (33%), Positives = 47/90 (52%), Gaps = 2/90 (2%)

Query: 34  FLRFLKIVGVGYKARAEAEGRLLYLKLGYVHDVELTVPSAVRIFCLKNNVVCCCGLDKHR 93
           + + L I G+GY  RA   GR L L +G+ H V +  P  +     +   V   G+DK +
Sbjct: 1   YSKELLIKGIGY--RARLVGRALELTVGFSHPVVVEPPEGITFEVPEPTRVRVSGIDKQK 58

Query: 94  VHQFAASVRSRKPPDPFKGKGIMCADEVIK 123
           V Q AA++R+ + P  +  KGI  A E ++
Sbjct: 59  VGQVAANIRAIRKPSAYHEKGIYYAGEPVR 88


>d2zjre1 d.141.1.1 (E:83-172) Ribosomal protein L6 {Deinococcus
           radiodurans [TaxId: 1299]}
          Length = 90

 Score = 89.1 bits (221), Expect = 4e-25
 Identities = 31/92 (33%), Positives = 48/92 (52%), Gaps = 2/92 (2%)

Query: 34  FLRFLKIVGVGYKARAEAEGRLLYLKLGYVHDVELTVPSAVRIFCLKNNVVCCCGLDKHR 93
           +   L++ GVG+  RA+  G+ L + +GY H V +  P+ V     +   +   G+DK  
Sbjct: 1   YTINLELRGVGF--RAKLTGKALEMNIGYSHPVIIEPPAGVTFAVPEPTRIDVSGIDKQL 58

Query: 94  VHQFAASVRSRKPPDPFKGKGIMCADEVIKKK 125
           V Q AA+VR  + PD + GKG+    E I  K
Sbjct: 59  VGQVAANVRKVRKPDAYHGKGVRFVGEQIALK 90


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.324    0.138    0.433 

Gapped
Lambda     K      H
   0.267   0.0648    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 504,156
Number of extensions: 21727
Number of successful extensions: 46
Number of sequences better than 10.0: 1
Number of HSP's gapped: 42
Number of HSP's successfully gapped: 7
Length of query: 132
Length of database: 2,407,596
Length adjustment: 76
Effective length of query: 56
Effective length of database: 1,364,116
Effective search space: 76390496
Effective search space used: 76390496
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 48 (22.4 bits)