BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 046146
(829 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3THC|A Chain A, Crystal Structure Of Human Beta-Galactosidase In Complex
With Galactose
pdb|3THC|B Chain B, Crystal Structure Of Human Beta-Galactosidase In Complex
With Galactose
pdb|3THC|C Chain C, Crystal Structure Of Human Beta-Galactosidase In Complex
With Galactose
pdb|3THC|D Chain D, Crystal Structure Of Human Beta-Galactosidase In Complex
With Galactose
pdb|3THD|A Chain A, Crystal Structure Of Human Beta-Galactosidase In Complex
With 1- Deoxygalactonojirimycin
pdb|3THD|B Chain B, Crystal Structure Of Human Beta-Galactosidase In Complex
With 1- Deoxygalactonojirimycin
pdb|3THD|C Chain C, Crystal Structure Of Human Beta-Galactosidase In Complex
With 1- Deoxygalactonojirimycin
pdb|3THD|D Chain D, Crystal Structure Of Human Beta-Galactosidase In Complex
With 1- Deoxygalactonojirimycin
Length = 654
Score = 129 bits (325), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 95/312 (30%), Positives = 149/312 (47%), Gaps = 23/312 (7%)
Query: 17 VTYDHRSLIIHGRRKLFLSASIHYPRSVPAMWPELIQAAKEGGLNTIESYVFWSGHELSP 76
+ Y S + G+ ++S SIHY R W + + K GLN I++YV W+ HE P
Sbjct: 11 IDYSRDSFLKDGQPFRYISGSIHYSRVPRFYWKDRLLKMKMAGLNAIQTYVPWNFHEPWP 70
Query: 77 GKYSFEGRYDLVKFVKTVQQAGMYMLLRIGPFVAAEYNYGGVPVWLHYIPGSVFRSYSKP 136
G+Y F +D+ F++ + G+ ++LR GP++ AE+ GG+P WL + RS
Sbjct: 71 GQYQFSEDHDVEYFLRLAHELGLLVILRPGPYICAEWEMGGLPAWLLEKESILLRSSDPD 130
Query: 137 FMSYMQKFMTLIVDMMKKEKLFASQGGPIILAQVENEYQWY--------EQFYKGGKEYA 188
+++ + K++ +++ MK L GGP+I QVENEY Y K + +
Sbjct: 131 YLAAVDKWLGVLLPKMK--PLLYQNGGPVITVQVENEYGSYFACDFDYLRFLQKRFRHHL 188
Query: 189 MWAASMAVSQNTGVPWIMCQQYDAP-DPVILVTPSTVTNSRLIHQKCPKFGLRIGLDGNT 247
+ + ++ C V T S +T++ L +KC G I + T
Sbjct: 189 GDDVVLFTTDGAHKTFLKCGALQGLYTTVDFGTGSNITDAFLSQRKCEPKGPLINSEFYT 248
Query: 248 KNCLIYPHRPH-----QDVAFSVARFIQKGGSVHNYYMYHGGTNFGRTSG-----DFVTT 297
L + +PH + VA S+ + +G SV N YM+ GGTNF +G T
Sbjct: 249 -GWLDHWGQPHSTIKTEAVASSLYDILARGASV-NLYMFIGGTNFAYWNGANSPYAAQPT 306
Query: 298 SYDYDAPIDEYG 309
SYDYDAP+ E G
Sbjct: 307 SYDYDAPLSEAG 318
Score = 30.4 bits (67), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 11/18 (61%), Positives = 13/18 (72%)
Query: 641 KGQAWLNGEPIGRYWDKR 658
KGQ W+NG +GRYW R
Sbjct: 555 KGQVWINGFNLGRYWPAR 572
>pdb|1TG7|A Chain A, Native Structure Of Beta-Galactosidase From Penicillium
Sp.
pdb|1XC6|A Chain A, Native Structure Of Beta-Galactosidase From Penicillium
Sp. In Complex With Galactose
Length = 971
Score = 112 bits (280), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 111/419 (26%), Positives = 171/419 (40%), Gaps = 70/419 (16%)
Query: 12 CLAANVTYDHRSLIIHGRRKLFLSASIH-YPRSVPAMWPELIQAAKEGGLNTIESYVFWS 70
L VT+D S+ ++G R + S +H Y V +++ ++ + K G N + YV W+
Sbjct: 1 LLQKYVTWDEHSIFVNGERLMIFSGEVHPYRLPVASLYIDIFEKVKALGFNCVSFYVDWA 60
Query: 71 GHELSPGKYSFEGRYDLVKFVKTVQQAGMYMLLRIGPFVAAEYNYGGVPVWLHYIPGSVF 130
E +PG YS EG +DL F ++AG+Y+L R GP++ AE + GG P WL + G +
Sbjct: 61 LLEGNPGHYSAEGIFDLQPFFDAAKEAGIYLLARPGPYINAEVSGGGFPGWLQRVDG-IL 119
Query: 131 RSYSKPFMSYMQKFMTLIVDMMKKEKLFASQGGPIILAQVENEYQ----WYEQFYKGGKE 186
R+ + ++ + + I + K ++ + GGPIIL Q ENEY Y F G
Sbjct: 120 RTSDEAYLKATDNYASNIAATIAKAQI--TNGGPIILYQPENEYSGACCGYNGFPDG--S 175
Query: 187 YAMWAASMAVSQNTGVPWIMCQQYDAPDPVILVTPSTVTNSRLI--HQKCPKFGLRIGLD 244
Y + A VP+I + A P T + I H P +G D
Sbjct: 176 YMQYIEDHARDAGIVVPFISNDAWAAGHNA----PGTGAGAVDIYGHDSYP-----LGFD 226
Query: 245 ---------GN------TKNCLIYPHRPHQDVAFSVARFIQKGG---------------- 273
GN T + P P+ V F F GG
Sbjct: 227 CANPSTWPSGNLPTYFHTSHEQQSPSTPYSLVEFQGGAFDPWGGVGFAKCAALLNHEFER 286
Query: 274 -----------SVHNYYMYHGGTNFGRTSGDFVTTSYDYDAPIDEYGLPRNPKWGHLKEL 322
+ N YM GGTN+G TSYDY + I E K+ LK L
Sbjct: 287 VFYKNDFSFGVAFLNLYMIFGGTNWGNLGHPGGYTSYDYGSAISESRNITREKYSELKLL 346
Query: 323 HEAIMLCEGVLLNSDPINLSLGPSQEADVYADSSGACAAFLSNTDNATDTTVVFRNVSY 381
+ G L+ ++P +LS Y +++ L ++++ + V R+ Y
Sbjct: 347 GNFAKVSPGYLV-ANPGDLS------TSTYTNTADLTVTPLLGSNSSASSFFVIRHSDY 398
>pdb|4E8C|A Chain A, Crystal Structure Of Streptococcal Beta-Galactosidase In
Complex With Galactose
pdb|4E8C|B Chain B, Crystal Structure Of Streptococcal Beta-Galactosidase In
Complex With Galactose
pdb|4E8D|A Chain A, Crystal Structure Of Streptococcal Beta-Galactosidase
pdb|4E8D|B Chain B, Crystal Structure Of Streptococcal Beta-Galactosidase
Length = 595
Score = 110 bits (276), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 91/321 (28%), Positives = 140/321 (43%), Gaps = 52/321 (16%)
Query: 26 IHGRRKLFLSASIHYPRSVPAMWPELIQAAKEGGLNTIESYVFWSGHELSPGKYSFEGRY 85
+ G+ LS +IHY R P W + K G NT+E+YV W+ HE G++ FEG
Sbjct: 12 LDGKSFKILSGAIHYFRVPPEDWYHSLYNLKALGFNTVETYVAWNLHEPCEGEFHFEGDL 71
Query: 86 DLVKFVKTVQQAGMYMLLRIGPFVAAEYNYGGVPVWLHYIPGSVFRSYSKPFMSYMQKFM 145
DL KF++ Q G+Y ++R PF+ AE+ +GG+P WL RS ++ + ++
Sbjct: 72 DLEKFLQIAQDLGLYAIVRPSPFICAEWEFGGLPAWL-LTKNMRIRSSDPAYIEAVGRYY 130
Query: 146 TLIVDMMKKEKLFASQGGPIILAQVENEYQWYEQFYKGGKEYAMWAASMAVSQNTGVPWI 205
++ + GG I++ QVENEY Y G++ A A + + GV
Sbjct: 131 DQLLPRLVPRL--LDNGGNILMMQVENEYGSY------GEDKAYLRAIRQLMEECGV--- 179
Query: 206 MCQQY--DAPDPVILVTPSTVTNSRLIHQKCPKFGLRIGLDGNTKNCLIYPH-------- 255
C + D P L + + + FG + + + H
Sbjct: 180 TCPLFTSDGPWRATLKAGTLIEEDLFV---TGNFGSKAPYNFSQMQEFFDEHGKKWPLMC 236
Query: 256 -----------------RPHQDVAFSVARFIQKGGSVHNYYMYHGGTNFGRTSG------ 292
R +++A +V +++G N YM+HGGTNFG +G
Sbjct: 237 MEFWDGWFNRWKEPIITRDPKELADAVREVLEQGSI--NLYMFHGGTNFGFMNGCSARGT 294
Query: 293 -DF-VTTSYDYDAPIDEYGLP 311
D TSYDYDA +DE G P
Sbjct: 295 LDLPQVTSYDYDALLDEEGNP 315
Score = 35.0 bits (79), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 55/252 (21%), Positives = 98/252 (38%), Gaps = 68/252 (26%)
Query: 467 YLWYTTSIIFSEDEEFLRTGSQPVLLIESKGHTLHAFINQELVQGNSTYSTGTLVFSFTA 526
YL Y T + +EE LR +I+ + +++ + V+ G +F
Sbjct: 385 YLLYRTETNWDAEEERLR-------IIDGRDRA-QLYVDGQWVKTQYQTEIGEDIFYQGK 436
Query: 527 LIPLKAGKNKIDLLSMTVGLPSAGPFYEWTGTGLTSVKIKGFNN---RTLDFSSYNWTYK 583
K G +++D+L +G + G + L + KG + L F NW +
Sbjct: 437 ----KKGLSRLDILIENMGRVNYGHKF------LADTQRKGIRTGVCKDLHFL-LNWKHY 485
Query: 584 IGVQGEDLRIYNPDNLT-NVNWTPTSEPPKNQPLTW-YKAVVNEPVGDEPIGLDMLHMGK 641
L + NP+ + + WT + QP + Y V EP + LD+ GK
Sbjct: 486 ------PLPLDNPEKIDFSKGWT------QGQPAFYAYDFTVEEP---KDTYLDLSEFGK 530
Query: 642 GQAWLNGEPIGRYWDKRSSIDDHCVQECDYRGTFNQQKCLTGSGEPTQRWYHVPRSWFKP 701
G A++NG+ +GR+W+ ++ ++P S+ K
Sbjct: 531 GVAFVNGQNLGRFWNVGPTLS-----------------------------LYIPHSYLKE 561
Query: 702 SGNILVIFEEKG 713
N ++IFE +G
Sbjct: 562 GANRIIIFETEG 573
>pdb|3D3A|A Chain A, Crystal Structure Of A Beta-Galactosidase From Bacteroides
Thetaiotaomicron
Length = 612
Score = 108 bits (271), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 90/308 (29%), Positives = 138/308 (44%), Gaps = 29/308 (9%)
Query: 23 SLIIHGRRKLFLSASIHYPRSVPAMWPELIQAAKEGGLNTIESYVFWSGHELSPGKYSFE 82
+ +++G + +A IHYPR W I+ K G NTI YVFW+ HE G+Y F
Sbjct: 14 TFLLNGEPFVVKAAEIHYPRIPKEYWEHRIKXCKALGXNTICLYVFWNFHEPEEGRYDFA 73
Query: 83 GRYDLVKFVKTVQQAGMYMLLRIGPFVAAEYNYGGVPVWLHYIPGSVFRSYSKPFMSYMQ 142
G+ D+ F + Q+ G Y+++R GP+V AE+ GG+P WL R + ++
Sbjct: 74 GQKDIAAFCRLAQENGXYVIVRPGPYVCAEWEXGGLPWWLLKKKDIKLREQDPYYXERVK 133
Query: 143 KFMTLIVDMMKKEKLFASQGGPIILAQVENEYQWYEQFYKGGKEYAMWAASMAVSQN--T 200
F+ + + L S+GG II QVENEY + G + + V Q T
Sbjct: 134 LFLNEVGKQLA--DLQISKGGNIIXVQVENEYGAF-----GIDKPYISEIRDXVKQAGFT 186
Query: 201 GVPWIMCQ-----QYDAPDPVI-LVTPSTVTNSRLIHQKCPKFGLRIGLDGNTKNCLIYP 254
GVP C + +A D ++ + T N ++ + L + +
Sbjct: 187 GVPLFQCDWNSNFENNALDDLLWTINFGTGANIDEQFKRLKELRPDTPLXCSEFWSGWFD 246
Query: 255 H-------RPHQDVAFSVARFIQKGGSVHNYYMYHGGTNFGRTSG-DF-----VTTSYDY 301
H R +++ + + S + Y HGGT+FG G +F TSYDY
Sbjct: 247 HWGAKHETRSAEELVKGXKEXLDRNISF-SLYXTHGGTSFGHWGGANFPNFSPTCTSYDY 305
Query: 302 DAPIDEYG 309
DAPI+E G
Sbjct: 306 DAPINESG 313
Score = 34.7 bits (78), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 48/189 (25%), Positives = 78/189 (41%), Gaps = 30/189 (15%)
Query: 470 YTTSIIFSEDEEFLRTGSQPVLLIESKGHTLHAFINQELVQGNSTYSTGTLVFSFTALIP 529
Y TS+ S+ E+ LLI F+N + + S +V L P
Sbjct: 387 YRTSLSASDKEQ--------TLLITEAHDWAQVFLNGKKLATLSRLKGEGVV----KLPP 434
Query: 530 LKAGKNKIDLLSMTVGLPSAGP-FYEWTGTGLTSVKIKGFNNRTLDFSSYNWTYKIGVQG 588
LK G +++D+L G + G Y+W G + K++ +++ ++ Y I V
Sbjct: 435 LKEG-DRLDILVEAXGRXNFGKGIYDWKGI---TEKVELQSDKGVELVKDWQVYTIPVDY 490
Query: 589 EDLRIYNPDNLTNVNWTPTSEPPKNQPLTWYKAVVN-EPVGDEPIGLDMLHMGKGQAWLN 647
R N +NQP +Y++ N +GD L+ + KG W+N
Sbjct: 491 SFARDKQYKQQENA---------ENQP-AYYRSTFNLNELGD--TFLNXXNWSKGXVWVN 538
Query: 648 GEPIGRYWD 656
G IGRYW+
Sbjct: 539 GHAIGRYWE 547
>pdb|3OG2|A Chain A, Native Crystal Structure Of Trichoderma Reesei
Beta-Galactosidase
pdb|3OGR|A Chain A, Complex Structure Of Beta-Galactosidase From Trichoderma
Reesei With Galactose
pdb|3OGS|A Chain A, Complex Structure Of Beta-Galactosidase From Trichoderma
Reesei With Iptg
pdb|3OGV|A Chain A, Complex Structure Of Beta-Galactosidase From Trichoderma
Reesei With Petg
Length = 1003
Score = 108 bits (270), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 101/378 (26%), Positives = 156/378 (41%), Gaps = 51/378 (13%)
Query: 17 VTYDHRSLIIHGRRKLFLSASIH-YPRSVPAMWPELIQAAKEGGLNTIESYVFWSGHELS 75
VT+D SL +HG R + S +H + VP+++ ++ K G NT+ YV W+ E
Sbjct: 26 VTWDEHSLFVHGERVVIFSGEVHPFRLPVPSLYLDVFHKIKALGFNTVSFYVDWALLEGK 85
Query: 76 PGKYSFEGRYDLVKFVKTVQQAGMYMLLRIGPFVAAEYNYGGVPVWLHYIPGSVFRSYSK 135
PG++ +G + L F + +AG+Y+L R GP++ AE + GG P WL + G + R+ +
Sbjct: 86 PGRFRADGIFSLEPFFEAATKAGIYLLARPGPYINAEVSGGGFPGWLQRVKGKL-RTDAP 144
Query: 136 PFMSYMQKFMTLIVDMMKKEKLFASQGGPIILAQVENEYQW-YEQFYKGGKEYAMWAASM 194
++ ++ I ++ K ++ + GGP+IL Q ENEY E K Y +
Sbjct: 145 DYLHATDNYVAHIASIIAKAQI--TNGGPVILYQPENEYSGAAEGVLFPNKPYMQYVIDQ 202
Query: 195 AVSQNTGVPWIMCQQYDAPDPVILVTPSTVT----NSRLIHQKC------PKFGLRIGLD 244
A + VP I + +V + + C P GL
Sbjct: 203 ARNAGIIVPLINNDAFPGGTGAPGTGLGSVDIYGHDGYPLGFDCAHPSAWPDNGLPTTWR 262
Query: 245 GNTKNCLIYPHRPHQDVAFSVARFIQKGG---------------------------SVHN 277
+ N I P P V F F GG ++ N
Sbjct: 263 QDHLN--ISPSTPFSLVEFQGGAFDPFGGWGFEQCSALVNHEFERVFYKNNMAAGVTIFN 320
Query: 278 YYMYHGGTNFGRTSGDFVTTSYDYDAPIDEYGLPRNPKWGHLKELHEAIMLCEGVLLNSD 337
YM GGTN+G TSYDY A I E K+ LK + + + G + +
Sbjct: 321 IYMTFGGTNWGNLGHPGGYTSYDYGASIREDRRIDREKYSELKLQGQFLKVSPG-YITAT 379
Query: 338 PINLSLGPSQEADVYADS 355
P N + G VY+DS
Sbjct: 380 PENATQG------VYSDS 391
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.135 0.423
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 26,804,535
Number of Sequences: 62578
Number of extensions: 1212513
Number of successful extensions: 2615
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 2590
Number of HSP's gapped (non-prelim): 20
length of query: 829
length of database: 14,973,337
effective HSP length: 107
effective length of query: 722
effective length of database: 8,277,491
effective search space: 5976348502
effective search space used: 5976348502
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (26.2 bits)