Query 046146
Match_columns 829
No_of_seqs 332 out of 1681
Neff 6.2
Searched_HMMs 46136
Date Fri Mar 29 09:10:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046146.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/046146hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03059 beta-galactosidase; P 100.0 2E-212 4E-217 1840.3 71.9 783 14-829 27-840 (840)
2 KOG0496 Beta-galactosidase [Ca 100.0 8E-146 2E-150 1233.8 40.4 616 7-735 9-648 (649)
3 PF01301 Glyco_hydro_35: Glyco 100.0 5E-82 1.1E-86 690.5 22.0 283 23-325 1-318 (319)
4 COG1874 LacA Beta-galactosidas 100.0 2.9E-36 6.4E-41 351.2 15.9 170 17-195 1-183 (673)
5 PF02140 Gal_Lectin: Galactose 99.8 3.2E-20 6.9E-25 163.7 5.0 76 751-828 1-80 (80)
6 PF02449 Glyco_hydro_42: Beta- 99.8 3.5E-19 7.5E-24 199.9 9.3 140 38-196 2-161 (374)
7 KOG4729 Galactoside-binding le 99.8 1E-18 2.2E-23 180.5 8.0 85 744-829 41-130 (265)
8 PF13364 BetaGal_dom4_5: Beta- 99.0 7.6E-10 1.6E-14 103.9 6.7 69 613-709 33-104 (111)
9 PF02836 Glyco_hydro_2_C: Glyc 98.9 4.1E-08 9E-13 107.2 17.2 149 17-205 1-155 (298)
10 PF00150 Cellulase: Cellulase 98.8 1.1E-07 2.3E-12 101.5 14.5 159 26-206 3-170 (281)
11 PRK10150 beta-D-glucuronidase; 98.7 3.6E-07 7.7E-12 109.4 17.6 161 11-205 272-446 (604)
12 PF13364 BetaGal_dom4_5: Beta- 98.4 1.1E-06 2.3E-11 82.7 9.7 84 455-546 24-110 (111)
13 PRK10340 ebgA cryptic beta-D-g 98.3 8.5E-06 1.9E-10 102.7 16.9 155 8-203 311-471 (1021)
14 PRK09525 lacZ beta-D-galactosi 98.3 7.9E-06 1.7E-10 102.9 16.6 149 12-204 331-485 (1027)
15 COG3250 LacZ Beta-galactosidas 98.3 9E-06 2E-10 99.2 15.4 122 12-175 281-408 (808)
16 PF02837 Glyco_hydro_2_N: Glyc 97.9 8.7E-05 1.9E-09 73.8 10.6 98 462-566 64-164 (167)
17 smart00633 Glyco_10 Glycosyl h 97.8 5.5E-05 1.2E-09 81.0 9.1 115 69-208 3-125 (254)
18 PLN02705 beta-amylase 97.8 8.2E-05 1.8E-09 86.2 9.2 81 44-130 266-358 (681)
19 PLN02905 beta-amylase 97.7 9.6E-05 2.1E-09 85.8 9.5 79 46-130 286-376 (702)
20 PLN02801 beta-amylase 97.7 0.00012 2.6E-09 83.7 9.4 81 44-130 35-127 (517)
21 PLN02803 beta-amylase 97.7 0.00016 3.5E-09 83.1 9.7 114 46-170 107-252 (548)
22 TIGR03356 BGL beta-galactosida 97.7 0.0001 2.2E-09 84.9 8.3 97 46-154 54-151 (427)
23 PF03198 Glyco_hydro_72: Gluca 97.7 0.00059 1.3E-08 74.5 13.5 151 15-204 9-179 (314)
24 PLN00197 beta-amylase; Provisi 97.7 0.00017 3.6E-09 83.2 9.8 81 44-130 125-217 (573)
25 PLN02161 beta-amylase 97.6 0.00023 5.1E-09 81.4 10.0 81 46-130 117-207 (531)
26 PF01373 Glyco_hydro_14: Glyco 97.4 0.00024 5.1E-09 80.0 6.5 114 47-170 17-152 (402)
27 PF13204 DUF4038: Protein of u 97.2 0.00092 2E-08 73.2 8.7 149 21-198 2-176 (289)
28 COG3693 XynA Beta-1,4-xylanase 97.0 0.0035 7.6E-08 68.4 9.6 131 55-208 55-193 (345)
29 PF00232 Glyco_hydro_1: Glycos 96.7 0.0018 3.9E-08 75.3 5.4 97 46-154 58-156 (455)
30 PF02837 Glyco_hydro_2_N: Glyc 96.7 0.0031 6.7E-08 62.7 6.0 67 613-709 66-136 (167)
31 PF00331 Glyco_hydro_10: Glyco 96.5 0.0044 9.5E-08 68.9 6.4 156 33-209 11-179 (320)
32 COG2730 BglC Endoglucanase [Ca 96.1 0.019 4.1E-07 65.9 8.8 117 44-175 66-192 (407)
33 PRK09852 cryptic 6-phospho-bet 96.1 0.0067 1.4E-07 70.9 5.1 96 46-153 71-169 (474)
34 PRK15014 6-phospho-beta-glucos 96.0 0.0076 1.6E-07 70.5 5.5 96 46-153 69-167 (477)
35 PF14488 DUF4434: Domain of un 96.0 0.076 1.6E-06 53.6 11.6 64 41-106 15-86 (166)
36 PF07745 Glyco_hydro_53: Glyco 95.9 0.023 4.9E-07 63.4 8.2 103 49-175 27-136 (332)
37 PRK10150 beta-D-glucuronidase; 95.7 0.052 1.1E-06 65.4 10.7 75 463-544 62-137 (604)
38 PRK09593 arb 6-phospho-beta-gl 95.6 0.016 3.5E-07 67.9 5.8 100 46-153 73-175 (478)
39 PLN02998 beta-glucosidase 95.6 0.013 2.9E-07 68.8 5.0 100 46-153 82-183 (497)
40 PRK13511 6-phospho-beta-galact 95.5 0.016 3.5E-07 67.8 5.5 95 46-152 54-149 (469)
41 PLN02814 beta-glucosidase 95.4 0.016 3.4E-07 68.3 4.9 100 46-153 77-178 (504)
42 PRK09589 celA 6-phospho-beta-g 95.4 0.019 4E-07 67.3 5.4 100 46-153 67-169 (476)
43 TIGR01233 lacG 6-phospho-beta- 95.3 0.032 6.8E-07 65.3 6.8 96 46-153 53-149 (467)
44 PLN02849 beta-glucosidase 95.1 0.026 5.6E-07 66.5 5.5 100 46-153 79-180 (503)
45 PRK10340 ebgA cryptic beta-D-g 95.1 0.071 1.5E-06 68.0 9.8 92 466-567 109-205 (1021)
46 COG3867 Arabinogalactan endo-1 94.7 0.15 3.1E-06 55.4 9.1 111 48-175 65-182 (403)
47 PRK09525 lacZ beta-D-galactosi 94.7 0.13 2.7E-06 65.8 10.3 93 465-567 119-217 (1027)
48 smart00812 Alpha_L_fucos Alpha 94.3 4.4 9.6E-05 46.4 20.7 245 38-337 76-341 (384)
49 PF14871 GHL6: Hypothetical gl 94.0 0.28 6.1E-06 47.8 8.8 98 50-152 4-123 (132)
50 COG2723 BglB Beta-glucosidase/ 92.6 0.18 3.9E-06 58.3 5.7 99 47-153 60-161 (460)
51 PRK09936 hypothetical protein; 91.7 0.3 6.6E-06 53.2 5.8 57 42-104 34-91 (296)
52 PF02638 DUF187: Glycosyl hydr 91.1 1.5 3.3E-05 48.7 10.7 118 44-172 17-162 (311)
53 TIGR00542 hxl6Piso_put hexulos 91.0 3.3 7.1E-05 44.8 13.1 133 45-204 15-151 (279)
54 smart00642 Aamy Alpha-amylase 90.5 0.66 1.4E-05 46.8 6.6 65 48-112 21-97 (166)
55 TIGR01515 branching_enzym alph 89.1 5.6 0.00012 48.4 14.3 72 36-107 142-228 (613)
56 PRK13210 putative L-xylulose 5 88.2 5 0.00011 43.1 11.9 133 46-204 16-151 (284)
57 COG3934 Endo-beta-mannanase [C 88.1 0.35 7.5E-06 55.6 2.8 157 23-196 3-168 (587)
58 COG1649 Uncharacterized protei 87.3 2.6 5.7E-05 48.5 9.3 123 44-175 62-210 (418)
59 PF14307 Glyco_tran_WbsX: Glyc 85.6 7.4 0.00016 43.8 11.8 135 43-206 55-195 (345)
60 PRK09441 cytoplasmic alpha-amy 83.2 1.9 4.1E-05 50.7 5.9 70 38-107 7-103 (479)
61 PRK09856 fructoselysine 3-epim 82.9 18 0.00039 38.7 12.9 130 47-202 14-145 (275)
62 TIGR02631 xylA_Arthro xylose i 82.8 17 0.00037 41.7 13.2 135 45-204 31-176 (382)
63 PF01261 AP_endonuc_2: Xylose 82.7 2.7 5.9E-05 42.3 6.2 125 52-203 1-129 (213)
64 PF13200 DUF4015: Putative gly 82.2 4.6 9.9E-05 45.1 8.0 111 44-155 11-136 (316)
65 cd00019 AP2Ec AP endonuclease 82.1 15 0.00032 39.6 12.0 128 46-202 10-139 (279)
66 PRK09989 hypothetical protein; 81.7 14 0.00031 39.4 11.5 43 47-103 16-58 (258)
67 PF00128 Alpha-amylase: Alpha 81.2 1.5 3.3E-05 46.9 3.9 59 49-107 7-74 (316)
68 TIGR03234 OH-pyruv-isom hydrox 81.1 21 0.00046 37.8 12.5 43 47-103 15-57 (254)
69 PRK13209 L-xylulose 5-phosphat 81.0 18 0.0004 38.9 12.2 131 47-204 22-156 (283)
70 PRK01060 endonuclease IV; Prov 79.4 17 0.00037 39.1 11.3 93 48-169 14-109 (281)
71 PRK14706 glycogen branching en 79.1 27 0.00058 42.8 13.8 53 53-105 175-237 (639)
72 PRK05402 glycogen branching en 78.8 23 0.00051 44.0 13.5 51 53-106 273-336 (726)
73 KOG2230 Predicted beta-mannosi 77.5 22 0.00047 42.3 11.6 149 22-210 328-495 (867)
74 PRK12568 glycogen branching en 76.1 30 0.00064 43.0 13.0 59 51-112 275-346 (730)
75 PF01229 Glyco_hydro_39: Glyco 75.9 7.1 0.00015 46.1 7.6 68 36-106 29-105 (486)
76 PF05913 DUF871: Bacterial pro 74.8 4.1 9E-05 46.2 5.0 73 34-112 2-74 (357)
77 PLN02447 1,4-alpha-glucan-bran 74.2 5.5 0.00012 49.4 6.2 61 46-107 251-322 (758)
78 PRK09997 hydroxypyruvate isome 73.3 42 0.00091 35.8 12.1 42 48-103 17-58 (258)
79 PRK12313 glycogen branching en 71.0 7.3 0.00016 47.6 6.3 55 52-106 177-241 (633)
80 TIGR02402 trehalose_TreZ malto 70.4 7.6 0.00016 46.6 6.1 53 50-105 115-180 (542)
81 cd06593 GH31_xylosidase_YicI Y 70.3 8.8 0.00019 42.3 6.2 68 44-111 22-92 (308)
82 cd06602 GH31_MGAM_SI_GAA This 69.7 86 0.0019 35.3 14.0 74 38-112 13-93 (339)
83 PF14587 Glyco_hydr_30_2: O-Gl 69.6 16 0.00034 41.8 8.0 138 56-209 57-227 (384)
84 PRK12677 xylose isomerase; Pro 69.4 74 0.0016 36.6 13.6 89 47-153 32-124 (384)
85 TIGR02403 trehalose_treC alpha 69.0 7.2 0.00016 46.7 5.6 58 48-107 29-97 (543)
86 PF13199 Glyco_hydro_66: Glyco 66.8 1.1E+02 0.0024 37.1 14.6 80 45-124 117-211 (559)
87 PRK14705 glycogen branching en 66.8 65 0.0014 42.4 13.5 55 51-105 771-835 (1224)
88 KOG0496 Beta-galactosidase [Ca 65.8 1.8 3.9E-05 51.8 -0.4 79 728-811 312-390 (649)
89 PRK10933 trehalose-6-phosphate 65.7 12 0.00026 45.0 6.5 57 48-107 35-103 (551)
90 PRK09505 malS alpha-amylase; R 64.0 14 0.0003 45.6 6.6 60 48-107 232-314 (683)
91 smart00518 AP2Ec AP endonuclea 63.6 1E+02 0.0022 33.0 12.7 101 36-169 3-104 (273)
92 cd04908 ACT_Bt0572_1 N-termina 63.3 25 0.00054 29.3 6.3 55 45-103 12-66 (66)
93 PF03659 Glyco_hydro_71: Glyco 62.5 29 0.00062 39.9 8.5 54 43-105 14-67 (386)
94 TIGR01531 glyc_debranch glycog 62.1 29 0.00063 45.7 9.1 110 23-139 104-234 (1464)
95 COG1306 Uncharacterized conser 62.0 14 0.00031 40.6 5.5 59 44-105 75-144 (400)
96 PLN02960 alpha-amylase 61.2 17 0.00036 45.8 6.6 56 50-105 421-486 (897)
97 PF02679 ComA: (2R)-phospho-3- 60.8 13 0.00029 39.9 5.1 52 45-106 83-134 (244)
98 cd06595 GH31_xylosidase_XylS-l 60.7 76 0.0017 34.9 11.2 72 38-109 14-98 (292)
99 TIGR02104 pulA_typeI pullulana 60.7 15 0.00032 44.7 6.1 57 50-107 168-251 (605)
100 TIGR02456 treS_nterm trehalose 60.5 12 0.00026 44.7 5.3 56 47-105 29-96 (539)
101 TIGR02401 trehalose_TreY malto 59.2 18 0.0004 45.3 6.6 65 45-109 15-89 (825)
102 PF14683 CBM-like: Polysacchar 59.1 9 0.0002 38.8 3.3 62 639-713 92-153 (167)
103 COG0296 GlgB 1,4-alpha-glucan 59.1 18 0.00039 44.0 6.3 52 49-104 168-233 (628)
104 cd06589 GH31 The enzymes of gl 58.8 29 0.00063 37.5 7.4 71 38-109 13-90 (265)
105 PRK10785 maltodextrin glucosid 58.7 19 0.00041 43.7 6.6 58 49-106 182-247 (598)
106 PF06832 BiPBP_C: Penicillin-B 58.5 18 0.00039 32.3 4.9 49 490-547 35-84 (89)
107 PLN02361 alpha-amylase 56.7 23 0.0005 40.9 6.5 56 50-105 33-96 (401)
108 TIGR00677 fadh2_euk methylenet 54.7 43 0.00093 36.8 7.9 109 32-154 130-251 (281)
109 PRK14511 maltooligosyl trehalo 53.7 26 0.00056 44.3 6.6 64 44-110 18-94 (879)
110 KOG0626 Beta-glucosidase, lact 53.2 28 0.0006 41.3 6.4 99 47-153 92-194 (524)
111 PRK14507 putative bifunctional 53.2 25 0.00053 47.4 6.6 65 44-108 756-830 (1693)
112 PF11875 DUF3395: Domain of un 52.7 11 0.00023 37.7 2.5 67 762-828 55-133 (151)
113 cd06591 GH31_xylosidase_XylS X 51.5 27 0.00059 38.8 5.9 72 38-110 13-91 (319)
114 PF01791 DeoC: DeoC/LacD famil 51.5 6 0.00013 41.9 0.7 54 49-105 79-132 (236)
115 PRK14510 putative bifunctional 51.3 22 0.00048 46.8 5.7 57 50-106 191-268 (1221)
116 cd06592 GH31_glucosidase_KIAA1 51.2 36 0.00077 37.6 6.7 69 41-112 25-97 (303)
117 PRK13398 3-deoxy-7-phosphohept 51.0 78 0.0017 34.6 9.1 76 23-105 20-98 (266)
118 cd06598 GH31_transferase_CtsZ 50.7 30 0.00066 38.4 6.1 67 44-110 22-95 (317)
119 cd06601 GH31_lyase_GLase GLase 48.9 67 0.0015 36.2 8.4 72 38-110 13-89 (332)
120 PLN00196 alpha-amylase; Provis 46.3 44 0.00095 39.0 6.7 59 49-107 47-114 (428)
121 cd06603 GH31_GANC_GANAB_alpha 45.7 36 0.00078 38.2 5.7 74 38-112 13-91 (339)
122 KOG1412 Aspartate aminotransfe 45.6 78 0.0017 35.4 7.9 118 44-209 131-250 (410)
123 PF02228 Gag_p19: Major core p 45.1 8.2 0.00018 34.1 0.4 37 44-97 20-56 (92)
124 cd06600 GH31_MGAM-like This fa 44.5 38 0.00082 37.7 5.6 73 38-111 13-90 (317)
125 TIGR03849 arch_ComA phosphosul 43.7 45 0.00098 35.8 5.7 53 45-107 70-122 (237)
126 cd06599 GH31_glycosidase_Aec37 43.7 50 0.0011 36.7 6.4 66 45-110 28-98 (317)
127 cd06416 GH25_Lys1-like Lys-1 i 43.5 56 0.0012 33.5 6.3 87 36-125 56-157 (196)
128 PRK08673 3-deoxy-7-phosphohept 43.3 69 0.0015 36.2 7.4 76 23-105 86-164 (335)
129 PRK03705 glycogen debranching 43.0 38 0.00082 41.7 5.7 55 51-105 184-262 (658)
130 cd02742 GH20_hexosaminidase Be 42.9 1.2E+02 0.0025 33.7 9.1 60 43-105 13-92 (303)
131 COG3623 SgaU Putative L-xylulo 42.9 1.1E+02 0.0024 32.9 8.2 123 46-201 18-150 (287)
132 PF01261 AP_endonuc_2: Xylose 42.9 1.1E+02 0.0024 30.6 8.3 102 47-176 28-136 (213)
133 PF02065 Melibiase: Melibiase; 42.9 1.9E+02 0.0041 33.5 11.0 89 39-127 51-148 (394)
134 PF08531 Bac_rhamnosid_N: Alph 42.6 1E+02 0.0022 31.2 7.9 55 489-545 6-67 (172)
135 PRK14582 pgaB outer membrane N 41.9 71 0.0015 39.4 7.7 110 46-173 334-467 (671)
136 PF08531 Bac_rhamnosid_N: Alph 41.6 30 0.00066 35.0 3.9 23 633-655 7-29 (172)
137 cd06604 GH31_glucosidase_II_Ma 41.0 49 0.0011 37.1 5.8 73 38-111 13-90 (339)
138 PF08308 PEGA: PEGA domain; I 40.7 30 0.00065 29.3 3.2 44 490-546 3-46 (71)
139 PF02055 Glyco_hydro_30: O-Gly 40.5 95 0.0021 37.0 8.3 164 29-209 74-281 (496)
140 TIGR02100 glgX_debranch glycog 40.0 41 0.00088 41.7 5.4 56 51-106 189-266 (688)
141 PF01055 Glyco_hydro_31: Glyco 39.7 42 0.00091 38.9 5.2 70 44-114 41-112 (441)
142 PF11324 DUF3126: Protein of u 38.9 68 0.0015 27.5 4.9 31 495-526 25-57 (63)
143 TIGR00676 fadh2 5,10-methylene 38.4 1.2E+02 0.0027 32.9 8.3 110 31-154 125-247 (272)
144 PRK08645 bifunctional homocyst 37.5 1.2E+02 0.0026 37.1 8.8 111 27-153 459-578 (612)
145 KOG2024 Beta-Glucuronidase GUS 37.2 49 0.0011 36.0 4.7 47 462-509 84-130 (297)
146 PRK09432 metF 5,10-methylenete 36.7 69 0.0015 35.5 6.0 88 51-154 168-266 (296)
147 cd06565 GH20_GcnA-like Glycosy 35.7 1.8E+02 0.004 32.1 9.2 59 44-105 15-80 (301)
148 PLN03059 beta-galactosidase; P 35.5 1.2E+02 0.0027 38.2 8.4 42 614-655 469-517 (840)
149 cd06545 GH18_3CO4_chitinase Th 35.1 1.7E+02 0.0036 31.3 8.6 96 76-199 36-132 (253)
150 COG0366 AmyA Glycosidases [Car 35.1 48 0.001 38.5 4.8 56 50-105 33-97 (505)
151 KOG4729 Galactoside-binding le 34.9 51 0.0011 35.7 4.4 77 751-829 147-231 (265)
152 cd06564 GH20_DspB_LnbB-like Gl 34.6 1.8E+02 0.004 32.4 9.1 62 39-105 12-102 (326)
153 COG3589 Uncharacterized conser 34.4 67 0.0015 36.2 5.4 72 34-112 4-76 (360)
154 TIGR02102 pullulan_Gpos pullul 34.3 63 0.0014 42.1 5.9 22 85-106 555-576 (1111)
155 PF01120 Alpha_L_fucos: Alpha- 32.7 7.6E+02 0.017 27.8 16.4 54 253-331 288-342 (346)
156 TIGR00433 bioB biotin syntheta 32.5 65 0.0014 35.0 5.0 52 49-103 123-176 (296)
157 cd00537 MTHFR Methylenetetrahy 32.1 1.4E+02 0.003 32.4 7.4 104 37-154 138-250 (274)
158 PF04914 DltD_C: DltD C-termin 32.0 98 0.0021 30.2 5.6 50 86-154 37-87 (130)
159 PRK09875 putative hydrolase; P 31.7 1.7E+02 0.0036 32.5 8.0 89 16-124 7-95 (292)
160 KOG0683 Glutamine synthetase [ 31.2 59 0.0013 36.9 4.3 45 73-118 203-259 (380)
161 cd06597 GH31_transferase_CtsY 31.1 95 0.0021 35.0 6.1 73 38-110 13-110 (340)
162 PLN02784 alpha-amylase 30.7 1E+02 0.0022 39.0 6.6 58 49-106 524-589 (894)
163 cd06418 GH25_BacA-like BacA is 30.2 2.3E+02 0.005 29.8 8.4 89 44-154 50-139 (212)
164 COG2884 FtsE Predicted ATPase 30.1 40 0.00086 35.4 2.6 16 640-655 55-70 (223)
165 cd08560 GDPD_EcGlpQ_like_1 Gly 29.9 1.3E+02 0.0028 34.3 6.9 53 47-105 246-298 (356)
166 cd06563 GH20_chitobiase-like T 29.9 2.1E+02 0.0046 32.4 8.7 59 44-105 16-106 (357)
167 COG1891 Uncharacterized protei 29.8 18 0.00039 37.0 0.0 65 32-104 117-186 (235)
168 cd06568 GH20_SpHex_like A subg 29.3 1E+02 0.0022 34.7 5.9 59 44-105 16-95 (329)
169 PF08924 DUF1906: Domain of un 28.7 1.5E+02 0.0033 28.9 6.4 87 44-154 36-127 (136)
170 cd06547 GH85_ENGase Endo-beta- 28.4 1.1E+02 0.0025 34.5 6.1 115 62-206 32-148 (339)
171 COG1735 Php Predicted metal-de 28.1 2.4E+02 0.0052 31.6 8.2 117 51-206 53-170 (316)
172 PRK09856 fructoselysine 3-epim 27.0 74 0.0016 34.0 4.2 55 47-105 91-149 (275)
173 PRK09267 flavodoxin FldA; Vali 26.7 3.5E+02 0.0076 26.7 8.8 74 26-102 44-117 (169)
174 TIGR02103 pullul_strch alpha-1 26.2 99 0.0022 39.5 5.6 21 85-105 404-424 (898)
175 PF14701 hDGE_amylase: glucano 26.0 1.9E+02 0.0041 33.9 7.3 97 39-141 13-128 (423)
176 PF01075 Glyco_transf_9: Glyco 25.9 49 0.0011 34.6 2.6 75 30-107 107-194 (247)
177 TIGR01698 PUNP purine nucleoti 25.9 90 0.002 33.6 4.5 39 25-63 47-86 (237)
178 KOG0259 Tyrosine aminotransfer 25.7 97 0.0021 35.6 4.8 66 35-104 171-238 (447)
179 PF10566 Glyco_hydro_97: Glyco 25.7 2.2E+02 0.0047 31.4 7.4 114 44-165 30-159 (273)
180 PF07691 PA14: PA14 domain; I 25.4 3.3E+02 0.0072 25.7 8.1 70 467-545 47-122 (145)
181 PLN02877 alpha-amylase/limit d 25.4 1.1E+02 0.0025 39.2 5.9 22 85-106 466-487 (970)
182 PF00728 Glyco_hydro_20: Glyco 25.2 1.2E+02 0.0025 33.8 5.5 59 44-105 16-93 (351)
183 cd01299 Met_dep_hydrolase_A Me 25.0 1.3E+02 0.0029 33.1 5.9 61 44-105 118-180 (342)
184 PRK13210 putative L-xylulose 5 24.4 98 0.0021 33.1 4.6 60 46-106 94-154 (284)
185 cd06562 GH20_HexA_HexB-like Be 24.3 3.6E+02 0.0078 30.5 9.2 62 44-105 16-90 (348)
186 PRK05265 pyridoxine 5'-phospha 24.3 83 0.0018 33.8 3.8 48 46-111 113-161 (239)
187 PLN02389 biotin synthase 24.1 93 0.002 35.7 4.5 50 49-101 178-229 (379)
188 KOG0622 Ornithine decarboxylas 24.0 1E+02 0.0023 35.6 4.7 67 43-119 190-257 (448)
189 PRK12858 tagatose 1,6-diphosph 23.9 94 0.002 35.2 4.4 62 42-105 102-163 (340)
190 KOG3833 Uncharacterized conser 23.8 79 0.0017 35.3 3.6 53 47-105 444-499 (505)
191 TIGR03700 mena_SCO4494 putativ 23.3 57 0.0012 36.9 2.6 50 49-101 150-204 (351)
192 PRK10076 pyruvate formate lyas 23.0 2.8E+02 0.006 29.3 7.4 125 45-203 53-210 (213)
193 PRK10422 lipopolysaccharide co 22.7 1.4E+02 0.003 33.4 5.5 72 33-107 188-273 (352)
194 cd04882 ACT_Bt0572_2 C-termina 22.6 1.7E+02 0.0036 23.6 4.7 55 45-101 10-64 (65)
195 cd03789 GT1_LPS_heptosyltransf 22.2 1.1E+02 0.0024 32.8 4.4 79 30-111 123-213 (279)
196 PF14307 Glyco_tran_WbsX: Glyc 21.6 1.3E+02 0.0028 33.9 5.0 42 20-64 150-193 (345)
197 cd06415 GH25_Cpl1-like Cpl-1 l 21.5 3.4E+02 0.0073 27.9 7.7 25 85-109 108-132 (196)
198 PTZ00372 endonuclease 4-like p 21.1 4.7E+02 0.01 30.6 9.3 79 49-153 144-228 (413)
199 PF08306 Glyco_hydro_98M: Glyc 21.0 72 0.0016 35.7 2.6 59 32-101 104-169 (324)
200 PLN02540 methylenetetrahydrofo 20.9 2.2E+02 0.0048 34.5 6.9 90 51-154 161-259 (565)
201 cd06570 GH20_chitobiase-like_1 20.9 3.4E+02 0.0075 30.3 8.0 60 43-105 15-88 (311)
202 KOG3698 Hyaluronoglucosaminida 20.8 1.3E+02 0.0029 36.0 4.8 72 26-107 11-96 (891)
203 COG1523 PulA Type II secretory 20.4 1.5E+02 0.0031 37.0 5.3 55 51-105 205-285 (697)
204 PRK06703 flavodoxin; Provision 20.4 4.1E+02 0.0088 25.8 7.7 103 26-153 46-148 (151)
205 PF12876 Cellulase-like: Sugar 20.2 1.2E+02 0.0026 27.0 3.5 46 160-205 6-61 (88)
206 PRK10658 putative alpha-glucos 20.1 2.3E+02 0.005 35.1 7.0 65 45-111 282-351 (665)
207 TIGR02455 TreS_stutzeri trehal 20.1 2.5E+02 0.0055 34.6 7.1 75 44-122 76-175 (688)
No 1
>PLN03059 beta-galactosidase; Provisional
Probab=100.00 E-value=2e-212 Score=1840.33 Aligned_cols=783 Identities=51% Similarity=0.962 Sum_probs=722.4
Q ss_pred ceeEEeeCCcEEECCEEeEEEEEEeeCCCCCcccHHHHHHHHHHcCCCEEEEceeCCcccCCCCeeeeccchhHHHHHHH
Q 046146 14 AANVTYDHRSLIIHGRRKLFLSASIHYPRSVPAMWPELIQAAKEGGLNTIESYVFWSGHELSPGKYSFEGRYDLVKFVKT 93 (829)
Q Consensus 14 ~~~v~~d~~~~~idGkp~~~~sG~~Hy~R~~~~~W~d~l~k~ka~GlNtV~~yv~Wn~hEp~~G~~dF~g~~dl~~fl~~ 93 (829)
+.+|+||+++|+|||||++|+||||||||+||++|+|||+||||+|||||+||||||+|||+||+|||+|++||++||++
T Consensus 27 ~~~v~~d~~~f~idG~p~~i~sG~iHY~R~~p~~W~d~L~k~Ka~GlNtV~tYV~Wn~HEp~~G~~dF~G~~DL~~Fl~l 106 (840)
T PLN03059 27 SASVSYDHRAFIINGQRRILISGSIHYPRSTPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPSPGNYYFEDRYDLVKFIKV 106 (840)
T ss_pred eeEEEEeCCEEEECCEEEEEEEeCcccCcCCHHHHHHHHHHHHHcCCCeEEEEecccccCCCCCeeeccchHHHHHHHHH
Confidence 56899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCcEEEEecCcccccccCCCCCCccccccCCeeeecCChhHHHHHHHHHHHHHHHHhhccccccCCCcEEEeccccc
Q 046146 94 VQQAGMYMLLRIGPFVAAEYNYGGVPVWLHYIPGSVFRSYSKPFMSYMQKFMTLIVDMMKKEKLFASQGGPIILAQVENE 173 (829)
Q Consensus 94 a~~~GL~VilrpGPyicaEw~~GG~P~WL~~~p~~~~R~~~~~y~~~~~~~~~~l~~~i~~~~l~~~~gGpII~~QiENE 173 (829)
|+|+||||||||||||||||++||+|.||+++|+|++|++||+|+++|++|+++|+++|++++|++++||||||+|||||
T Consensus 107 a~e~GLyvilRpGPYIcAEw~~GGlP~WL~~~~~i~~Rs~d~~fl~~v~~~~~~l~~~l~~~~l~~~~GGPIImvQIENE 186 (840)
T PLN03059 107 VQAAGLYVHLRIGPYICAEWNFGGFPVWLKYVPGIEFRTDNGPFKAAMQKFTEKIVDMMKSEKLFEPQGGPIILSQIENE 186 (840)
T ss_pred HHHcCCEEEecCCcceeeeecCCCCchhhhcCCCcccccCCHHHHHHHHHHHHHHHHHHhhcceeecCCCcEEEEEeccc
Confidence 99999999999999999999999999999999999999999999999999999999999988999999999999999999
Q ss_pred cccchhhcc-CcHHHHHHHHHHHHhCCCccceeeeccCCCCCccccccCccccCcccc------------------CCcC
Q 046146 174 YQWYEQFYK-GGKEYAMWAASMAVSQNTGVPWIMCQQYDAPDPVILVTPSTVTNSRLI------------------HQKC 234 (829)
Q Consensus 174 yg~~~~~y~-~~~~y~~~l~~~~~~~g~~vp~~~~~~~~~~~~~i~t~~~~~~~~~~c------------------~~~~ 234 (829)
||++..+|+ +|++||+||++|++++|++|||+||++.++++++++| ||+.+| .+|+
T Consensus 187 YGs~~~~~~~~d~~Yl~~l~~~~~~~Gi~VPl~t~dg~~~~~~v~~t-----~Ng~~~~~f~~~~~~~P~m~tE~w~GWf 261 (840)
T PLN03059 187 YGPVEWEIGAPGKAYTKWAADMAVKLGTGVPWVMCKQEDAPDPVIDT-----CNGFYCENFKPNKDYKPKMWTEAWTGWY 261 (840)
T ss_pred ccceecccCcchHHHHHHHHHHHHHcCCCcceEECCCCCCCccceec-----CCCchhhhcccCCCCCCcEEeccCchhH
Confidence 998755565 8999999999999999999999999998888888888 444333 2455
Q ss_pred CCCCCcccCCCCCcccccCCCCChhHHHHHHHHHHHcCceeeeeeEeecCCCCCCC-CCCccccccCCCCcccCCCCCCC
Q 046146 235 PKFGLRIGLDGNTKNCLIYPHRPHQDVAFSVARFIQKGGSVHNYYMYHGGTNFGRT-SGDFVTTSYDYDAPIDEYGLPRN 313 (829)
Q Consensus 235 p~WG~~~~~d~~~~~~~~~~~r~~~~~~~~~~~~l~~g~s~~N~YM~hGGTNfG~~-ga~~~~TSYDYdApl~E~G~~~t 313 (829)
.+||++ +++|+++|+|+.+++||++|+|++|||||||||||||| ||++++|||||||||+|+|++++
T Consensus 262 ~~wG~~------------~~~r~~~d~a~~~~~~l~~g~S~~N~YMfhGGTNFG~~~Ga~~~~TSYDYdAPL~E~G~~t~ 329 (840)
T PLN03059 262 TEFGGA------------VPNRPAEDLAFSVARFIQNGGSFINYYMYHGGTNFGRTAGGPFIATSYDYDAPLDEYGLPRE 329 (840)
T ss_pred hhcCCC------------CCcCCHHHHHHHHHHHHHcCCeeEEeeeccCcCCcccccCCCccccccccCCccccccCcch
Confidence 699999 89999999999999999999998899999999999999 89999999999999999999866
Q ss_pred hhHHHHHHHHHHHHhhccccCCCCCccCCCCCCccceeeecCCCceEEEecccCCCceeEEEEcceeeeccCceeeeecC
Q 046146 314 PKWGHLKELHEAIMLCEGVLLNSDPINLSLGPSQEADVYADSSGACAAFLSNTDNATDTTVVFRNVSYFLPAWSVSILSD 393 (829)
Q Consensus 314 pKy~~lr~l~~~~~~~~~~l~~~~p~~~~~~~~~~~~~y~~~~g~~~~fl~n~~~~~~~~v~f~~~~~~lp~~sv~i~~~ 393 (829)
|||.+||++|++++.+++.|+..+|....+|+.+++.+|.... .|++|+.|.+.+.+.+|+|+|++|.||+|||+||||
T Consensus 330 pKy~~lr~l~~~~~~~~~~l~~~~p~~~~lg~~~ea~~y~~~~-~caaFl~n~~~~~~~~v~f~g~~y~lp~~Svsilpd 408 (840)
T PLN03059 330 PKWGHLRDLHKAIKLCEPALVSVDPTVTSLGSNQEAHVFKSKS-ACAAFLANYDTKYSVKVTFGNGQYDLPPWSVSILPD 408 (840)
T ss_pred hHHHHHHHHHHHHHhcCccccCCCCceeccCCceeEEEccCcc-chhhheeccCCCCceeEEECCcccccCccceeeccc
Confidence 8999999999999999888888888788899999999998666 799999999999999999999999999999999999
Q ss_pred CcceeeccceecccceeeeecccccccCCCccccccccccccccccc-cccccCccccccccccccCCCCCCccEEEEEE
Q 046146 394 CKNVVFNTAKVSTQTSIIEMVPEYLQQSDSSADEGSKALQWDVFKEM-TGIWGEANFVKSGLVDHLNTTKDTTDYLWYTT 472 (829)
Q Consensus 394 ~~~~~~~t~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~e~-~~~~~~~~~~~~~~~Eql~~t~d~~Gyl~Y~T 472 (829)
|+.++|||+++..|...+++.+ ....+.|+++.|+ .+...+.+++...++||+++|+|.+||+||||
T Consensus 409 ~~~~lfnta~v~~q~~~~~~~~------------~~~~~~w~~~~e~~~~~~~~~~~~~e~l~e~~n~t~d~~dYlwY~t 476 (840)
T PLN03059 409 CKTAVFNTARLGAQSSQMKMNP------------VGSTFSWQSYNEETASAYTDDTTTMDGLWEQINVTRDATDYLWYMT 476 (840)
T ss_pred ccceeeeccccccccceeeccc------------ccccccceeecccccccccCCCcchhhHHHhhcccCCCCceEEEEE
Confidence 9999999999988876553222 1244589999998 55455567888899999999999999999999
Q ss_pred EecCCCchhhhccCCCceEEecCcceEEEEEEcCEEEEEEEeccCCceeeEEEeeeecCCCccEEEEEEecCCcccccCC
Q 046146 473 SIIFSEDEEFLRTGSQPVLLIESKGHTLHAFINQELVQGNSTYSTGTLVFSFTALIPLKAGKNKIDLLSMTVGLPSAGPF 552 (829)
Q Consensus 473 ~v~~~~~~~~~~~~~~~~L~i~~~~D~~~vfvng~~v~G~~~~~~~~~~~~~~~~~~l~~g~~~L~ILven~Gr~NyG~~ 552 (829)
+|....++...+.+.+++|+|.+++|++||||||+++ |++++++.+..++++.+++++.|.|+|+||||||||+|||++
T Consensus 477 ~i~~~~~~~~~~~~~~~~L~v~~~~d~~~vFVNg~~~-Gt~~~~~~~~~~~~~~~v~l~~g~n~L~iLse~vG~~NyG~~ 555 (840)
T PLN03059 477 EVHIDPDEGFLKTGQYPVLTIFSAGHALHVFINGQLA-GTVYGELSNPKLTFSQNVKLTVGINKISLLSVAVGLPNVGLH 555 (840)
T ss_pred EEeecCCccccccCCCceEEEcccCcEEEEEECCEEE-EEEEeecCCcceEEecccccCCCceEEEEEEEeCCCCccCcc
Confidence 9987765543456678899999999999999999999 999987766778888888898899999999999999999999
Q ss_pred CCccCccce-EEEecCccccccccccCCceEeccCCcccccccCCCCCCCcCCCCCCCCCCCCCceEEEEEEECCCCCCC
Q 046146 553 YEWTGTGLT-SVKIKGFNNRTLDFSSYNWTYKIGVQGEDLRIYNPDNLTNVNWTPTSEPPKNQPLTWYKAVVNEPVGDEP 631 (829)
Q Consensus 553 ~~~~~kGI~-~V~l~g~~~~~~dL~~~~W~~~~~L~ge~~~~~~~~~~~~~~W~~~~~~~~~~~~~wYk~~F~~p~~~d~ 631 (829)
|+++.|||+ +|+|+|++.+++||+++.|.|+++|+||.++|+..++..+++|.+.+..+..+||+|||++|++|++.||
T Consensus 556 le~~~kGI~g~V~i~g~~~g~~dls~~~W~y~lgL~GE~~~i~~~~~~~~~~W~~~~~~~~~~p~twYK~~Fd~p~g~Dp 635 (840)
T PLN03059 556 FETWNAGVLGPVTLKGLNEGTRDLSGWKWSYKIGLKGEALSLHTITGSSSVEWVEGSLLAQKQPLTWYKTTFDAPGGNDP 635 (840)
T ss_pred cccccccccccEEEecccCCceecccCccccccCccceeccccccCCCCCccccccccccCCCCceEEEEEEeCCCCCCC
Confidence 999999999 9999998888899998899999999999999998766667899876544445679999999999999999
Q ss_pred eEEeeCCCccEEEEEcCeecceeeccCCCCCCCcccccccCCCcccccccCCCCCcccceeecCcccccccccEEEEEee
Q 046146 632 IGLDMLHMGKGQAWLNGEPIGRYWDKRSSIDDHCVQECDYRGTFNQQKCLTGSGEPTQRWYHVPRSWFKPSGNILVIFEE 711 (829)
Q Consensus 632 ~~Ld~~g~gKG~vwVNG~nlGRYW~~~~~~~~g~~~~c~~~g~~~~~~~~~~~~gPqqtlYhVP~~~Lk~g~N~lvvfEe 711 (829)
|||||+|||||+|||||+||||||+. .++++|| +.|+|||+|+++||+|||+||||||||||++|||+|+|+||||||
T Consensus 636 v~LDm~gmGKG~aWVNG~nIGRYW~~-~a~~~gC-~~c~y~g~~~~~kc~~~cggP~q~lYHVPr~~Lk~g~N~lViFEe 713 (840)
T PLN03059 636 LALDMSSMGKGQIWINGQSIGRHWPA-YTAHGSC-NGCNYAGTFDDKKCRTNCGEPSQRWYHVPRSWLKPSGNLLIVFEE 713 (840)
T ss_pred EEEecccCCCeeEEECCccccccccc-ccccCCC-ccccccccccchhhhccCCCceeEEEeCcHHHhccCCceEEEEEe
Confidence 99999999999999999999999986 5778899 889999999999999999999999999999999999999999999
Q ss_pred cCCCCcceeeeecccccccccccccCCCCC---------CCCCCCcEEEeCCCCCcEEEEEeeecCCCCCCCCCcCcCce
Q 046146 712 KGGDPTRIRFSRRNISSICGLVAADEDGNE---------SSNSNATIHLQCPKNRSISTVKFASFGTPTGKCGSFRMGDC 782 (829)
Q Consensus 712 ~g~~p~~i~~~~~~~~~iC~~vsE~~~~~~---------~~~~~~~~~L~C~~g~~I~~I~~A~yGr~~~~C~~~~~~~C 782 (829)
+|++|..|+|.++.++.+|++++|+||+.. .....+.++|+|+.|++|++|.||+||||.++|+++++++|
T Consensus 714 ~gg~p~~I~~~~~~~~~~c~~~~e~~p~~~~w~~~~~~~~~~~~~~~~L~C~~G~~Is~I~fAsYGrp~gtC~~~~~g~C 793 (840)
T PLN03059 714 WGGNPAGISLVKRTTDSVCADIFEGQPALKNWQIIASGKVNSLQPKAHLWCPPGQKISKIKFASFGVPQGTCGSFREGSC 793 (840)
T ss_pred cCCCCCceEEEEeecCcccccccccCCccccccccccccccccCCcEEEECCCCceEEEEEEecCCCCCCCCCCCCCCCE
Confidence 999999999999999999999999996443 13457789999999999988999999999999999999999
Q ss_pred eCCChhhHHHhhcCCCCceEEEeCCCCCCCCCCCCCceEEEEEEEeC
Q 046146 783 HDPNSTSFVEKVCLNKNKCAIELTETNFNKGLCPDATKTLAVEVTCS 829 (829)
Q Consensus 783 ~~~~s~~~V~~~C~Gk~~C~v~a~~~~Fg~DPC~gt~KyL~V~y~C~ 829 (829)
++++|+++|+++|+||++|+|.|++.+||+|||+||+|||+|+|.|+
T Consensus 794 ~a~~S~~vV~kaC~Gk~~CsV~asn~~FggDPC~gt~KyL~V~~~Cs 840 (840)
T PLN03059 794 HAHKSYDAFERNCIGKQSCSVTVAPEVFGGDPCPDSMKKLSVEAVCS 840 (840)
T ss_pred eCCcHHHHHHHHCCCCCceEEEeccceecCCCCCCceeEEEEEEEeC
Confidence 99999999999999999999999999997799999999999999996
No 2
>KOG0496 consensus Beta-galactosidase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=8.2e-146 Score=1233.76 Aligned_cols=616 Identities=50% Similarity=0.907 Sum_probs=558.2
Q ss_pred eeecccc-ceeEEeeCCcEEECCEEeEEEEEEeeCCCCCcccHHHHHHHHHHcCCCEEEEceeCCcccCCCCeeeeccch
Q 046146 7 CFNSFCL-AANVTYDHRSLIIHGRRKLFLSASIHYPRSVPAMWPELIQAAKEGGLNTIESYVFWSGHELSPGKYSFEGRY 85 (829)
Q Consensus 7 ~~~~~~~-~~~v~~d~~~~~idGkp~~~~sG~~Hy~R~~~~~W~d~l~k~ka~GlNtV~~yv~Wn~hEp~~G~~dF~g~~ 85 (829)
|+-++.. ++.|+||+++|+|||+|++++||+|||||++|++|+|+|+|||++|+|+|+||||||.|||+||+|||+|+.
T Consensus 9 ~~~~~~~~~~~v~yd~~~~~idG~r~~~isGsIHY~R~~pe~W~~~i~k~k~~Gln~IqtYVfWn~Hep~~g~y~FsG~~ 88 (649)
T KOG0496|consen 9 GLLSLSGSSFNVTYDKRSLLIDGQRFILISGSIHYPRSTPEMWPDLIKKAKAGGLNVIQTYVFWNLHEPSPGKYDFSGRY 88 (649)
T ss_pred hhhccccceeEEeccccceeecCCeeEEEEeccccccCChhhhHHHHHHHHhcCCceeeeeeecccccCCCCcccccchh
Confidence 3344444 789999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHcCcEEEEecCcccccccCCCCCCccccccCCeeeecCChhHHHHHHHHHHHHHHHHhhccccccCCCcE
Q 046146 86 DLVKFVKTVQQAGMYMLLRIGPFVAAEYNYGGVPVWLHYIPGSVFRSYSKPFMSYMQKFMTLIVDMMKKEKLFASQGGPI 165 (829)
Q Consensus 86 dl~~fl~~a~~~GL~VilrpGPyicaEw~~GG~P~WL~~~p~~~~R~~~~~y~~~~~~~~~~l~~~i~~~~l~~~~gGpI 165 (829)
||++||++|+++|||||||+||||||||++||+|.||...|++.+||+|++|+++|++|+++|+++++ +|+++|||||
T Consensus 89 DlvkFikl~~~~GLyv~LRiGPyIcaEw~~GG~P~wL~~~pg~~~Rt~nepfk~~~~~~~~~iv~~mk--~L~~~qGGPI 166 (649)
T KOG0496|consen 89 DLVKFIKLIHKAGLYVILRIGPYICAEWNFGGLPWWLRNVPGIVFRTDNEPFKAEMERWTTKIVPMMK--KLFASQGGPI 166 (649)
T ss_pred HHHHHHHHHHHCCeEEEecCCCeEEecccCCCcchhhhhCCceEEecCChHHHHHHHHHHHHHHHHHH--HHHhhcCCCE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999 8999999999
Q ss_pred EEeccccccccchhhcc-CcHHHHHHHHHHHHhCCCccceeeeccCCCCCccccccCccccCcccc-CCc----------
Q 046146 166 ILAQVENEYQWYEQFYK-GGKEYAMWAASMAVSQNTGVPWIMCQQYDAPDPVILVTPSTVTNSRLI-HQK---------- 233 (829)
Q Consensus 166 I~~QiENEyg~~~~~y~-~~~~y~~~l~~~~~~~g~~vp~~~~~~~~~~~~~i~t~~~~~~~~~~c-~~~---------- 233 (829)
||+|||||||.+...|+ ..++|++|-+.|+...+.+|||+||.+.++|++++++ ||+++| +.|
T Consensus 167 Il~QIENEYG~~~~~~~~~~k~y~~w~a~m~~~l~~gvpw~mCk~~dapd~~in~-----cng~~c~~~f~~pn~~~kP~ 241 (649)
T KOG0496|consen 167 ILVQIENEYGNYLRALGAEGKSYLKWAAVLATSLGTGVPWVMCKQDDAPDPGINT-----CNGFYCGDTFKRPNSPNKPL 241 (649)
T ss_pred EEEEeechhhHHHHHHHHHHHHhhccceEEEEecCCCCceeEecCCCCCCccccc-----cCCccchhhhccCCCCCCCc
Confidence 99999999999887787 7899999999999999999999999999999999999 999999 433
Q ss_pred ---------CCCCCCcccCCCCCcccccCCCCChhHHHHHHHHHHHcCceeeeeeEeecCCCCCCCCCCccccccCCCCc
Q 046146 234 ---------CPKFGLRIGLDGNTKNCLIYPHRPHQDVAFSVARFIQKGGSVHNYYMYHGGTNFGRTSGDFVTTSYDYDAP 304 (829)
Q Consensus 234 ---------~p~WG~~~~~d~~~~~~~~~~~r~~~~~~~~~~~~l~~g~s~~N~YM~hGGTNfG~~ga~~~~TSYDYdAp 304 (829)
+.+||++ ++.|+++++|..+++|+++|+|++||||||||||||+|.+++.+||||||||
T Consensus 242 ~wtE~wtgwf~~wGg~------------~~~R~~e~ia~~va~fls~ggs~vNyYM~hGGTNFGrt~G~~~atsy~~dap 309 (649)
T KOG0496|consen 242 VWTENWTGWFTHWGGP------------HPCRPVEDIALSVARFLSKGGSSVNYYMYHGGTNFGRTNGPFIATSYDYDAP 309 (649)
T ss_pred eecccccchhhhhCCC------------CCCCCHHHHHHHHHHHHhcCccceEEEEeecccCCCcccCcccccccccccc
Confidence 3399999 9999999999999999999999999999999999999944999999999999
Q ss_pred ccCCCCCCChhHHHHHHHHHHHHhhccccCCCCCccCCCCCCccceeeecCCCceEEEecccCCCceeEEEEcceeeecc
Q 046146 305 IDEYGLPRNPKWGHLKELHEAIMLCEGVLLNSDPINLSLGPSQEADVYADSSGACAAFLSNTDNATDTTVVFRNVSYFLP 384 (829)
Q Consensus 305 l~E~G~~~tpKy~~lr~l~~~~~~~~~~l~~~~p~~~~~~~~~~~~~y~~~~g~~~~fl~n~~~~~~~~v~f~~~~~~lp 384 (829)
|| |..++|||+|+|.+|..++.+++.+..+++...+ |+...++|++|+.|.+....+.+.|++..+.+|
T Consensus 310 ~d--gl~~~pk~ghlk~~hts~d~~ep~lv~gd~~~~k---------yg~~~~~C~~Fl~n~~~~~~~~v~f~~~~y~~~ 378 (649)
T KOG0496|consen 310 LD--GLLRQPKYGHLKPLHTSYDYCEPALVAGDITTAK---------YGNLREACAAFLSNNNGAPAAPVPFNKPKYRLP 378 (649)
T ss_pred cc--hhhcCCCccccccchhhhhhcCccccccCccccc---------ccchhhHHHHHHhcCCCCCCCccccCCCccccC
Confidence 99 9999999999999999999999888777655333 444556699999999998889999999999999
Q ss_pred CceeeeecCCcceeeccceecccceeeeecccccccCCCccccccccccccccccccccccCccccccccccccCCCCCC
Q 046146 385 AWSVSILSDCKNVVFNTAKVSTQTSIIEMVPEYLQQSDSSADEGSKALQWDVFKEMTGIWGEANFVKSGLVDHLNTTKDT 464 (829)
Q Consensus 385 ~~sv~i~~~~~~~~~~t~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~e~~~~~~~~~~~~~~~~Eql~~t~d~ 464 (829)
+|+|+|+|+|++++|||+++.++ |....|++ ++|..++ .
T Consensus 379 ~~slsilpdck~~~~nta~~~~~--------------------------~~~~~e~~------------~~~~~~~---~ 417 (649)
T KOG0496|consen 379 PWSLSILPDCKTVVYNTAKVMAQ--------------------------WISFTEPI------------PSEAVGQ---S 417 (649)
T ss_pred ceeEEechhhcchhhhccccccc--------------------------cccccCCC------------ccccccC---c
Confidence 99999999999999999866432 33334443 4566655 5
Q ss_pred ccEEEEEEEecCCCchhhhccCCCceEEec-CcceEEEEEEcCEEEEEEEeccCCceeeEEEeeeecCCCccEEEEEEec
Q 046146 465 TDYLWYTTSIIFSEDEEFLRTGSQPVLLIE-SKGHTLHAFINQELVQGNSTYSTGTLVFSFTALIPLKAGKNKIDLLSMT 543 (829)
Q Consensus 465 ~Gyl~Y~T~v~~~~~~~~~~~~~~~~L~i~-~~~D~~~vfvng~~v~G~~~~~~~~~~~~~~~~~~l~~g~~~L~ILven 543 (829)
+||++|+|.++.+..|+ +.|+|. +++|++||||||+++ |+++++.....+.+..++.|+.|.|+|+|||||
T Consensus 418 ~~~ll~~~~~t~d~sd~-------t~~~i~ls~g~~~hVfvNg~~~-G~~~g~~~~~~~~~~~~~~l~~g~n~l~iL~~~ 489 (649)
T KOG0496|consen 418 FGGLLEQTNLTKDKSDT-------TSLKIPLSLGHALHVFVNGEFA-GSLHGNNEKIKLNLSQPVGLKAGENKLALLSEN 489 (649)
T ss_pred ceEEEEEEeeccccCCC-------ceEeecccccceEEEEECCEEe-eeEeccccceeEEeecccccccCcceEEEEEEe
Confidence 88999999987655442 568888 999999999999999 999988777778888889999999999999999
Q ss_pred CCcccccCCCCccCccce-EEEecCccccccccccCCceEeccCCcccccccCCCCCCCcCCCCCCCCCCCCCceEEEEE
Q 046146 544 VGLPSAGPFYEWTGTGLT-SVKIKGFNNRTLDFSSYNWTYKIGVQGEDLRIYNPDNLTNVNWTPTSEPPKNQPLTWYKAV 622 (829)
Q Consensus 544 ~Gr~NyG~~~~~~~kGI~-~V~l~g~~~~~~dL~~~~W~~~~~L~ge~~~~~~~~~~~~~~W~~~~~~~~~~~~~wYk~~ 622 (829)
+||+||| +++.+.|||+ +|+|+|. +|++++.|.|+++|.||.+.+|+.+...+++|......+..+|.+||+ +
T Consensus 490 ~G~~n~G-~~e~~~~Gi~g~v~l~g~----~~l~~~~w~~~~gl~ge~~~~~~~~~~~~v~w~~~~~~~~k~P~~w~k-~ 563 (649)
T KOG0496|consen 490 VGLPNYG-HFENDFKGILGPVYLNGL----IDLTWTKWPYKVGLKGEKLGLHTEEGSSKVKWKKLSNTATKQPLTWYK-T 563 (649)
T ss_pred cCCCCcC-cccccccccccceEEeee----eccceeecceecccccchhhccccccccccceeeccCcccCCCeEEEE-E
Confidence 9999999 8899999999 9999987 568877899999999999999999888889998776544447899999 9
Q ss_pred EECCCCCCCeEEeeCCCccEEEEEcCeecceeeccCCCCCCCcccccccCCCcccccccCCCCCcccceeecCccccccc
Q 046146 623 VNEPVGDEPIGLDMLHMGKGQAWLNGEPIGRYWDKRSSIDDHCVQECDYRGTFNQQKCLTGSGEPTQRWYHVPRSWFKPS 702 (829)
Q Consensus 623 F~~p~~~d~~~Ld~~g~gKG~vwVNG~nlGRYW~~~~~~~~g~~~~c~~~g~~~~~~~~~~~~gPqqtlYhVP~~~Lk~g 702 (829)
|++|++.+||||||.|||||+|||||+|||||||++ |||++ ||||++|||++
T Consensus 564 f~~p~g~~~t~Ldm~g~GKG~vwVNG~niGRYW~~~---------------------------G~Q~~-yhvPr~~Lk~~ 615 (649)
T KOG0496|consen 564 FDIPSGSEPTALDMNGWGKGQVWVNGQNIGRYWPSF---------------------------GPQRT-YHVPRSWLKPS 615 (649)
T ss_pred ecCCCCCCCeEEecCCCcceEEEECCcccccccCCC---------------------------CCceE-EECcHHHhCcC
Confidence 999999999999999999999999999999999963 79555 55999999999
Q ss_pred ccEEEEEeecCCCCcceeeeecccccccccccc
Q 046146 703 GNILVIFEEKGGDPTRIRFSRRNISSICGLVAA 735 (829)
Q Consensus 703 ~N~lvvfEe~g~~p~~i~~~~~~~~~iC~~vsE 735 (829)
.|+||||||++++|..|+|.++.+..+|..+.|
T Consensus 616 ~N~lvvfEee~~~p~~i~~~~~~~~~~~~~v~~ 648 (649)
T KOG0496|consen 616 GNLLVVFEEEGGDPNGISFVTRPVLSTCAYVRE 648 (649)
T ss_pred CceEEEEEeccCCCccceEEEeEeeeEeeeccc
Confidence 999999999999999999999988899988776
No 3
>PF01301 Glyco_hydro_35: Glycosyl hydrolases family 35; InterPro: IPR001944 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 35 GH35 from CAZY comprises enzymes with only one known activity; beta-galactosidase (3.2.1.23 from EC). Mammalian beta-galactosidase is a lysosomal enzyme (gene GLB1) which cleaves the terminal galactose from gangliosides, glycoproteins, and glycosaminoglycans and whose deficiency is the cause of the genetic disease Gm(1) gangliosidosis (Morquio disease type B).; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3OGS_A 3OGV_A 3OGR_A 3OG2_A 1TG7_A 1XC6_A 3THC_C 3THD_D 3D3A_A 4E8D_B ....
Probab=100.00 E-value=5e-82 Score=690.51 Aligned_cols=283 Identities=36% Similarity=0.662 Sum_probs=214.3
Q ss_pred cEEECCEEeEEEEEEeeCCCCCcccHHHHHHHHHHcCCCEEEEceeCCcccCCCCeeeeccchhHHHHHHHHHHcCcEEE
Q 046146 23 SLIIHGRRKLFLSASIHYPRSVPAMWPELIQAAKEGGLNTIESYVFWSGHELSPGKYSFEGRYDLVKFVKTVQQAGMYML 102 (829)
Q Consensus 23 ~~~idGkp~~~~sG~~Hy~R~~~~~W~d~l~k~ka~GlNtV~~yv~Wn~hEp~~G~~dF~g~~dl~~fl~~a~~~GL~Vi 102 (829)
+|+|||||++|+||||||||+||++|+|+|+||||+|+|||+||||||+|||+||+|||+|.+||++||++|+|+||+||
T Consensus 1 ~~~~~g~~~~~~~Ge~hy~r~p~~~W~~~l~k~ka~G~n~v~~yv~W~~he~~~g~~df~g~~dl~~f~~~a~~~gl~vi 80 (319)
T PF01301_consen 1 SFLIDGKPFFILSGEFHYFRIPPEYWRDRLQKMKAAGLNTVSTYVPWNLHEPEEGQFDFTGNRDLDRFLDLAQENGLYVI 80 (319)
T ss_dssp CEEETTEEE-EEEEEE-GGGS-GGGHHHHHHHHHHTT-SEEEEE--HHHHSSBTTB---SGGG-HHHHHHHHHHTT-EEE
T ss_pred CeEECCEEEEEEEeeeccccCChhHHHHHHHHHHhCCcceEEEeccccccCCCCCcccccchhhHHHHHHHHHHcCcEEE
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EecCcccccccCCCCCCccccccCCeeeecCChhHHHHHHHHHHHHHHHHhhccccccCCCcEEEeccccccccchhhcc
Q 046146 103 LRIGPFVAAEYNYGGVPVWLHYIPGSVFRSYSKPFMSYMQKFMTLIVDMMKKEKLFASQGGPIILAQVENEYQWYEQFYK 182 (829)
Q Consensus 103 lrpGPyicaEw~~GG~P~WL~~~p~~~~R~~~~~y~~~~~~~~~~l~~~i~~~~l~~~~gGpII~~QiENEyg~~~~~y~ 182 (829)
|||||||||||++||+|.||++++++++|++||.|+++|++|+++|+++|+ ++++++||||||+|||||||. ++
T Consensus 81 lrpGpyi~aE~~~gG~P~Wl~~~~~~~~R~~~~~~~~~~~~~~~~~~~~~~--~~~~~~GGpII~vQvENEyg~----~~ 154 (319)
T PF01301_consen 81 LRPGPYICAEWDNGGLPAWLLRKPDIRLRTNDPPFLEAVERWYRALAKIIK--PLQYTNGGPIIMVQVENEYGS----YG 154 (319)
T ss_dssp EEEES---TTBGGGG--GGGGGSTTS-SSSS-HHHHHHHHHHHHHHHHHHG--GGBGGGTSSEEEEEESSSGGC----TS
T ss_pred ecccceecccccchhhhhhhhccccccccccchhHHHHHHHHHHHHHHHHH--hhhhcCCCceehhhhhhhhCC----Cc
Confidence 999999999999999999999999999999999999999999999999999 689999999999999999994 56
Q ss_pred CcHHHHHHHHHHHHhCCCc-cceeeeccCC--------CCCc-ccccc---Cccc-------------cCcccc----CC
Q 046146 183 GGKEYAMWAASMAVSQNTG-VPWIMCQQYD--------APDP-VILVT---PSTV-------------TNSRLI----HQ 232 (829)
Q Consensus 183 ~~~~y~~~l~~~~~~~g~~-vp~~~~~~~~--------~~~~-~i~t~---~~~~-------------~~~~~c----~~ 232 (829)
++++||+.|++++++.|++ +++++++... .++. ++.+. +... ....+| .+
T Consensus 155 ~~~~Y~~~l~~~~~~~g~~~~~~~t~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~p~~P~~~~E~~~G 234 (319)
T PF01301_consen 155 TDRAYMEALKDAYRDWGIDPVLLYTTDGPWGSWLPDGGLPGADIYATDNFPPGDNPDEYFGDQRSFQPNQPLMCTEFWGG 234 (319)
T ss_dssp S-HHHHHHHHHHHHHTT-SSSBEEEEESSSHCCHCCC-TTTGSCEEEEEETTTSSHHHHHHHHHHHHTTS--EEEEEESS
T ss_pred ccHhHHHHHHHHHHHhhCccceeeccCCCcccccccCCCCcceEEeccccCCCchHHHHHhhhhhcCCCCCeEEEEeccc
Confidence 8999999999999999998 6677776521 2232 11110 0010 012222 46
Q ss_pred cCCCCCCcccCCCCCcccccCCCCChhHHHHHHHHHHHcCceeeeeeEeecCCCCCCC-CCCcc----ccccCCCCcccC
Q 046146 233 KCPKFGLRIGLDGNTKNCLIYPHRPHQDVAFSVARFIQKGGSVHNYYMYHGGTNFGRT-SGDFV----TTSYDYDAPIDE 307 (829)
Q Consensus 233 ~~p~WG~~~~~d~~~~~~~~~~~r~~~~~~~~~~~~l~~g~s~~N~YM~hGGTNfG~~-ga~~~----~TSYDYdApl~E 307 (829)
|+.+||++ ++.+++++++..+++++++|.+ +||||||||||||++ |++.. +|||||+|||+|
T Consensus 235 wf~~WG~~------------~~~~~~~~~~~~l~~~l~~g~~-~nyYM~hGGTNfG~~~ga~~~~~p~~TSYDY~ApI~E 301 (319)
T PF01301_consen 235 WFDHWGGP------------HYTRPAEDVAADLARMLSKGNS-LNYYMFHGGTNFGFWAGANYYGQPDITSYDYDAPIDE 301 (319)
T ss_dssp ---BTTS--------------HHHHHHHHHHHHHHHHHHCSE-EEEEECE--B--TT-B-EETTTEEB-SB--TT-SB-T
T ss_pred cccccCCC------------CccCCHHHHHHHHHHHHHhhcc-cceeeccccCCccccccCCCCCCCCcccCCcCCccCc
Confidence 77899998 7888999999999999999966 799999999999999 44443 599999999999
Q ss_pred CCCCCChhHHHHHHHHHH
Q 046146 308 YGLPRNPKWGHLKELHEA 325 (829)
Q Consensus 308 ~G~~~tpKy~~lr~l~~~ 325 (829)
+|++ ||||.+||+||.+
T Consensus 302 ~G~~-~~Ky~~lr~l~~~ 318 (319)
T PF01301_consen 302 YGQL-TPKYYELRRLHQK 318 (319)
T ss_dssp TS-B--HHHHHHHHHHHT
T ss_pred CCCc-CHHHHHHHHHHhc
Confidence 9998 7999999999864
No 4
>COG1874 LacA Beta-galactosidase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=2.9e-36 Score=351.17 Aligned_cols=170 Identities=26% Similarity=0.432 Sum_probs=149.1
Q ss_pred EEeeCCcEEECCEEeEEEEEEeeCCCCCcccHHHHHHHHHHcCCCEEEE-ceeCCcccCCCCeeeeccchhHHHHHHHHH
Q 046146 17 VTYDHRSLIIHGRRKLFLSASIHYPRSVPAMWPELIQAAKEGGLNTIES-YVFWSGHELSPGKYSFEGRYDLVKFVKTVQ 95 (829)
Q Consensus 17 v~~d~~~~~idGkp~~~~sG~~Hy~R~~~~~W~d~l~k~ka~GlNtV~~-yv~Wn~hEp~~G~~dF~g~~dl~~fl~~a~ 95 (829)
|.+++..+++||+|++++||++||+|+|++.|.|||++||++|+|+|++ |+.|++|||++|+|||+ .+|++ ||++|+
T Consensus 1 ~~~~~~~~~~dg~~~~l~gG~y~p~~~p~~~w~ddl~~mk~~G~N~V~ig~faW~~~eP~eG~fdf~-~~D~~-~l~~a~ 78 (673)
T COG1874 1 VSYDGYSFIRDGRRILLYGGDYYPERWPRETWMDDLRKMKALGLNTVRIGYFAWNLHEPEEGKFDFT-WLDEI-FLERAY 78 (673)
T ss_pred CcccccceeeCCceeEEeccccChHHCCHHHHHHHHHHHHHhCCCeeEeeeEEeeccCccccccCcc-cchHH-HHHHHH
Confidence 4578899999999999999999999999999999999999999999999 99999999999999999 88888 999999
Q ss_pred HcCcEEEEecCc-ccccccCCCCCCccccccCCeee---------ecCChhHHHHHHHHHHHHHHHHhhccccccCCCcE
Q 046146 96 QAGMYMLLRIGP-FVAAEYNYGGVPVWLHYIPGSVF---------RSYSKPFMSYMQKFMTLIVDMMKKEKLFASQGGPI 165 (829)
Q Consensus 96 ~~GL~VilrpGP-yicaEw~~GG~P~WL~~~p~~~~---------R~~~~~y~~~~~~~~~~l~~~i~~~~l~~~~gGpI 165 (829)
+.||+||||||| ..|.+|..+++|+||..++.-.. ..++|.|++++++ |+++|++ ..+++|++|
T Consensus 79 ~~Gl~vil~t~P~g~~P~Wl~~~~PeiL~~~~~~~~~~~g~r~~~~~~~~~Yr~~~~~----i~~~ire--r~~~~~~~v 152 (673)
T COG1874 79 KAGLYVILRTGPTGAPPAWLAKKYPEILAVDENGRVRSDGARENICPVSPVYREYLDR----ILQQIRE--RLYGNGPAV 152 (673)
T ss_pred hcCceEEEecCCCCCCchHHhcCChhheEecCCCcccCCCcccccccccHHHHHHHHH----HHHHHHH--HHhccCCce
Confidence 999999999999 99999999999999988665333 3457778888887 5555553 225899999
Q ss_pred EEeccccccccchhhcc--CcHHHHHHHHHHH
Q 046146 166 ILAQVENEYQWYEQFYK--GGKEYAMWAASMA 195 (829)
Q Consensus 166 I~~QiENEyg~~~~~y~--~~~~y~~~l~~~~ 195 (829)
|+||++||||++. +++ |...+..||++.+
T Consensus 153 ~~w~~dneY~~~~-~~~~~~~~~f~~wLk~~y 183 (673)
T COG1874 153 ITWQNDNEYGGHP-CYCDYCQAAFRLWLKKGY 183 (673)
T ss_pred eEEEccCccCCcc-ccccccHHHHHHHHHhCc
Confidence 9999999999852 344 7888888998877
No 5
>PF02140 Gal_Lectin: Galactose binding lectin domain; InterPro: IPR000922 The D-galactoside binding lectin purified from sea urchin (Anthocidaris crassispina) eggs exists as a disulphide-linked homodimer of two subunits; the dimeric form is essential for hemagglutination activity []. The sea urchin egg lectin (SUEL) forms a new class of lectins. Although SUEL was first isolated as a D-galactoside binding lectin, it was latter shown that it bind to L-rhamnose preferentially [, ]. L-rhamnose and D-galactose share the same hydroxyl group orientation at C2 and C4 of the pyranose ring structure. A cysteine-rich domain homologous to the SUEL protein has been identified in the following proteins [, , ]: Plant beta-galactosidases (3.2.1.23 from EC) (lactases). Mammalian latrophilin, the calcium independent receptor of alpha-latrotoxin (CIRL). The galactose-binding lectin domain is not required for alpha-latratoxin binding []. Human lectomedin-1. Rhamnose-binding lectin (SAL) from catfish (Silurus asotus, Namazu) eggs. This protein is composed of three tandem repeat domains homologous to the SUEL lectin domain. All cysteine positions of each domain are completely conserved []. The hypothetical B0457.1, F32A7.3A and F32A7.3B proteins from Caenorhabditis elegans. The human KIAA0821 protein. ; GO: 0005529 sugar binding; PDB: 2JXA_A 2JX9_A 2ZX2_A 2ZX3_B 2ZX0_B 2ZX1_B 2ZX4_B.
Probab=99.80 E-value=3.2e-20 Score=163.68 Aligned_cols=76 Identities=30% Similarity=0.670 Sum_probs=60.8
Q ss_pred EeCCCCCcEEEEEeeecCCCC-CCCCCc---CcCceeCCChhhHHHhhcCCCCceEEEeCCCCCCCCCCCCCceEEEEEE
Q 046146 751 LQCPKNRSISTVKFASFGTPT-GKCGSF---RMGDCHDPNSTSFVEKVCLNKNKCAIELTETNFNKGLCPDATKTLAVEV 826 (829)
Q Consensus 751 L~C~~g~~I~~I~~A~yGr~~-~~C~~~---~~~~C~~~~s~~~V~~~C~Gk~~C~v~a~~~~Fg~DPC~gt~KyL~V~y 826 (829)
|+|++|++| .|.+|+|||+. .+|++. ...+|+++.++++|+++|+||++|+|.+++.+|| ||||||+|||+|+|
T Consensus 1 L~C~~g~~I-~I~~A~YGR~~~~~C~~~~~~~~~~C~~~~~~~~v~~~C~g~~~C~v~~~~~~f~-dpC~~~~KyL~V~Y 78 (80)
T PF02140_consen 1 LSCPPGKVI-SIDSAFYGRTSSSICPSSSSGSNTNCSAPDALSIVKERCNGKQSCSVPADNSVFG-DPCPGTSKYLEVTY 78 (80)
T ss_dssp EE-STTEEE-EEEEEEEEBSSSSTT--GGGCS-TTB--TTHHHHHHHHHTTBSEEEEESSHHHH---SSTTS--EEEEEE
T ss_pred CCCcCCCEE-EEEEeecCCCCCCCCcCCCcCCCCccccccccchhHHhCCCCCccEEEeccCccC-CCCCCCCeEEEEEE
Confidence 799999766 69999999976 499743 2467999999999999999999999999999997 99999999999999
Q ss_pred Ee
Q 046146 827 TC 828 (829)
Q Consensus 827 ~C 828 (829)
+|
T Consensus 79 ~C 80 (80)
T PF02140_consen 79 TC 80 (80)
T ss_dssp EE
T ss_pred EC
Confidence 99
No 6
>PF02449 Glyco_hydro_42: Beta-galactosidase; InterPro: IPR013529 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This group of beta-galactosidase enzymes (3.2.1.23 from EC) belong to the glycosyl hydrolase 42 family GH42 from CAZY. The enzyme catalyses the hydrolysis of terminal, non-reducing terminal beta-D-galactosidase residues.; GO: 0004565 beta-galactosidase activity, 0005975 carbohydrate metabolic process, 0009341 beta-galactosidase complex; PDB: 1KWK_A 1KWG_A 3U7V_A.
Probab=99.78 E-value=3.5e-19 Score=199.91 Aligned_cols=140 Identities=21% Similarity=0.333 Sum_probs=111.1
Q ss_pred eeCCCCCcccHHHHHHHHHHcCCCEEEE-ceeCCcccCCCCeeeeccchhHHHHHHHHHHcCcEEEEecCcccccccCCC
Q 046146 38 IHYPRSVPAMWPELIQAAKEGGLNTIES-YVFWSGHELSPGKYSFEGRYDLVKFVKTVQQAGMYMLLRIGPFVAAEYNYG 116 (829)
Q Consensus 38 ~Hy~R~~~~~W~d~l~k~ka~GlNtV~~-yv~Wn~hEp~~G~~dF~g~~dl~~fl~~a~~~GL~VilrpGPyicaEw~~G 116 (829)
+++..++++.|+++|++||++|+|+|++ .+.|+..||+||+|||+ .|+++|++|+++||+|||+.. .+
T Consensus 2 y~pe~~~~e~~~~d~~~m~~~G~n~vri~~~~W~~lEP~eG~ydF~---~lD~~l~~a~~~Gi~viL~~~--------~~ 70 (374)
T PF02449_consen 2 YYPEQWPEEEWEEDLRLMKEAGFNTVRIGEFSWSWLEPEEGQYDFS---WLDRVLDLAAKHGIKVILGTP--------TA 70 (374)
T ss_dssp --GGGS-CCHHHHHHHHHHHHT-SEEEE-CCEHHHH-SBTTB---H---HHHHHHHHHHCTT-EEEEEEC--------TT
T ss_pred CCcccCCHHHHHHHHHHHHHcCCCEEEEEEechhhccCCCCeeecH---HHHHHHHHHHhccCeEEEEec--------cc
Confidence 5677899999999999999999999996 67899999999999999 899999999999999999985 56
Q ss_pred CCCccccc-cCCeee----------------ecCChhHHHHHHHHHHHHHHHHhhccccccCCCcEEEeccccccccchh
Q 046146 117 GVPVWLHY-IPGSVF----------------RSYSKPFMSYMQKFMTLIVDMMKKEKLFASQGGPIILAQVENEYQWYEQ 179 (829)
Q Consensus 117 G~P~WL~~-~p~~~~----------------R~~~~~y~~~~~~~~~~l~~~i~~~~l~~~~gGpII~~QiENEyg~~~~ 179 (829)
..|.||.+ +|++.. ..++|.|++++++++++|++++++ ...||++||+||++.. .
T Consensus 71 ~~P~Wl~~~~Pe~~~~~~~g~~~~~g~~~~~~~~~p~yr~~~~~~~~~l~~~y~~-------~p~vi~~~i~NE~~~~-~ 142 (374)
T PF02449_consen 71 APPAWLYDKYPEILPVDADGRRRGFGSRQHYCPNSPAYREYARRFIRALAERYGD-------HPAVIGWQIDNEPGYH-R 142 (374)
T ss_dssp TS-HHHHCCSGCCC-B-TTTSBEECCCSTT-HCCHHHHHHHHHHHHHHHHHHHTT-------TTTEEEEEECCSTTCT-S
T ss_pred ccccchhhhcccccccCCCCCcCccCCccccchhHHHHHHHHHHHHHHHHhhccc-------cceEEEEEeccccCcC-c
Confidence 79999975 677532 244789999999999999988874 4589999999999874 3
Q ss_pred hcc--CcHHHHHHHHHHHH
Q 046146 180 FYK--GGKEYAMWAASMAV 196 (829)
Q Consensus 180 ~y~--~~~~y~~~l~~~~~ 196 (829)
+|+ +.++|.+||++++.
T Consensus 143 ~~~~~~~~~f~~wLk~kY~ 161 (374)
T PF02449_consen 143 CYSPACQAAFRQWLKEKYG 161 (374)
T ss_dssp --SHHHHHHHHHHHHHHHS
T ss_pred CCChHHHHHHHHHHHHHhC
Confidence 455 67899999999996
No 7
>KOG4729 consensus Galactoside-binding lectin [General function prediction only]
Probab=99.75 E-value=1e-18 Score=180.50 Aligned_cols=85 Identities=28% Similarity=0.560 Sum_probs=77.7
Q ss_pred CCCCcEEEeCCCCCcEEEEEeeecCCCC-CCCCC----cCcCceeCCChhhHHHhhcCCCCceEEEeCCCCCCCCCCCCC
Q 046146 744 NSNATIHLQCPKNRSISTVKFASFGTPT-GKCGS----FRMGDCHDPNSTSFVEKVCLNKNKCAIELTETNFNKGLCPDA 818 (829)
Q Consensus 744 ~~~~~~~L~C~~g~~I~~I~~A~yGr~~-~~C~~----~~~~~C~~~~s~~~V~~~C~Gk~~C~v~a~~~~Fg~DPC~gt 818 (829)
|+|..++|+||.|.+|+ |+.|+|||.. ..|.. .-+.+|..+.|++++.++|++++.|.|.|..++||.||||||
T Consensus 41 CdG~~i~L~CP~~dvIs-v~sanYGR~~~~iC~pd~~~~~Si~C~~p~s~~i~~~rCnnr~~C~vvv~s~~F~~DPCPgT 119 (265)
T KOG4729|consen 41 CDGERITLSCPRGDVIS-VQSANYGRFSDKICDPDPGREESINCYLPKSFSILSSRCNNRRQCTVVVDSDVFGDDPCPGT 119 (265)
T ss_pred ecCceEEEEcCCCCEEE-EEecccCcccccccCCccccccchhccChHHHHHHHHhcCCCceEEEEecCCccCCCCCCCc
Confidence 78889999999999996 9999999954 68953 225789999999999999999999999999999999999999
Q ss_pred ceEEEEEEEeC
Q 046146 819 TKTLAVEVTCS 829 (829)
Q Consensus 819 ~KyL~V~y~C~ 829 (829)
+|||+|+|.|.
T Consensus 120 ~KYLev~Y~Cv 130 (265)
T KOG4729|consen 120 SKYLEVQYGCV 130 (265)
T ss_pred hhheEEEeccC
Confidence 99999999993
No 8
>PF13364 BetaGal_dom4_5: Beta-galactosidase jelly roll domain; PDB: 1TG7_A 1XC6_A 3OGS_A 3OGV_A 3OGR_A 3OG2_A.
Probab=98.98 E-value=7.6e-10 Score=103.92 Aligned_cols=69 Identities=25% Similarity=0.510 Sum_probs=50.4
Q ss_pred CCCceEEEEEEECCCCCCCeE-Ee--eCCCccEEEEEcCeecceeeccCCCCCCCcccccccCCCcccccccCCCCCccc
Q 046146 613 NQPLTWYKAVVNEPVGDEPIG-LD--MLHMGKGQAWLNGEPIGRYWDKRSSIDDHCVQECDYRGTFNQQKCLTGSGEPTQ 689 (829)
Q Consensus 613 ~~~~~wYk~~F~~p~~~d~~~-Ld--~~g~gKG~vwVNG~nlGRYW~~~~~~~~g~~~~c~~~g~~~~~~~~~~~~gPqq 689 (829)
..+..|||++|+.......+. |+ .....+++|||||++|||||+. +|||+
T Consensus 33 ~~g~~~Yrg~F~~~~~~~~~~~l~~~~g~~~~~~vwVNG~~~G~~~~~---------------------------~g~q~ 85 (111)
T PF13364_consen 33 HAGYLWYRGTFTGTGQDTSLTPLNIQGGNAFRASVWVNGWFLGSYWPG---------------------------IGPQT 85 (111)
T ss_dssp SSCEEEEEEEEETTTEEEEEE-EEECSSTTEEEEEEETTEEEEEEETT---------------------------TECCE
T ss_pred CCCCEEEEEEEeCCCcceeEEEEeccCCCceEEEEEECCEEeeeecCC---------------------------CCccE
Confidence 357899999996422111223 33 3457899999999999999964 48999
Q ss_pred ceeecCcccccccccEEEEE
Q 046146 690 RWYHVPRSWFKPSGNILVIF 709 (829)
Q Consensus 690 tlYhVP~~~Lk~g~N~lvvf 709 (829)
+++ ||+.+|+.++|.|+|+
T Consensus 86 tf~-~p~~il~~~n~v~~vl 104 (111)
T PF13364_consen 86 TFS-VPAGILKYGNNVLVVL 104 (111)
T ss_dssp EEE-E-BTTBTTCEEEEEEE
T ss_pred EEE-eCceeecCCCEEEEEE
Confidence 999 9999999875665554
No 9
>PF02836 Glyco_hydro_2_C: Glycosyl hydrolases family 2, TIM barrel domain; InterPro: IPR006103 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 2 GH2 from CAZY comprises enzymes with several known activities; beta-galactosidase (3.2.1.23 from EC); beta-mannosidase (3.2.1.25 from EC); beta-glucuronidase (3.2.1.31 from EC). These enzymes contain a conserved glutamic acid residue which has been shown [], in Escherichia coli lacZ (P00722 from SWISSPROT), to be the general acid/base catalyst in the active site of the enzyme. Beta-galactosidase from E. coli has a TIM-barrel-like core surrounded by four other largely beta domains [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3CMG_A 3FN9_C 1YQ2_A 3K4D_B 3LPG_B 3LPF_A 3K4A_B 3K46_B 3GM8_A 3DEC_A ....
Probab=98.89 E-value=4.1e-08 Score=107.15 Aligned_cols=149 Identities=15% Similarity=0.194 Sum_probs=104.2
Q ss_pred EEeeCCcEEECCEEeEEEEEEeeCCC------CCcccHHHHHHHHHHcCCCEEEEceeCCcccCCCCeeeeccchhHHHH
Q 046146 17 VTYDHRSLIIHGRRKLFLSASIHYPR------SVPAMWPELIQAAKEGGLNTIESYVFWSGHELSPGKYSFEGRYDLVKF 90 (829)
Q Consensus 17 v~~d~~~~~idGkp~~~~sG~~Hy~R------~~~~~W~d~l~k~ka~GlNtV~~yv~Wn~hEp~~G~~dF~g~~dl~~f 90 (829)
|.+.++.|+|||||++|-+...|.+. ++++.|+.+|++||++|+|+|++ .|-|. -.+|
T Consensus 1 vev~~~~~~lNGk~~~l~Gv~~h~~~~~~g~a~~~~~~~~d~~l~k~~G~N~iR~-----~h~p~-----------~~~~ 64 (298)
T PF02836_consen 1 VEVKDGGFYLNGKPIFLRGVNRHQDYPGLGRAMPDEAMERDLELMKEMGFNAIRT-----HHYPP-----------SPRF 64 (298)
T ss_dssp EEEETTEEEETTEEE-EEEEEE-S-BTTTBT---HHHHHHHHHHHHHTT-SEEEE-----TTS-------------SHHH
T ss_pred CEEECCEEEECCEEEEEEEEeeCcCcccccccCCHHHHHHHHHHHHhcCcceEEc-----ccccC-----------cHHH
Confidence 67889999999999999999999643 47888999999999999999999 33332 2588
Q ss_pred HHHHHHcCcEEEEecCcccccccCCCCCCccccccCCeeeecCChhHHHHHHHHHHHHHHHHhhccccccCCCcEEEecc
Q 046146 91 VKTVQQAGMYMLLRIGPFVAAEYNYGGVPVWLHYIPGSVFRSYSKPFMSYMQKFMTLIVDMMKKEKLFASQGGPIILAQV 170 (829)
Q Consensus 91 l~~a~~~GL~VilrpGPyicaEw~~GG~P~WL~~~p~~~~R~~~~~y~~~~~~~~~~l~~~i~~~~l~~~~gGpII~~Qi 170 (829)
+++|.+.||.|+.-+. ..+.-.|-... .......||.+.+.+.+-+++++.+.+.| ..||||=+
T Consensus 65 ~~~cD~~GilV~~e~~--------~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~v~~~~NH-------PSIi~W~~ 128 (298)
T PF02836_consen 65 YDLCDELGILVWQEIP--------LEGHGSWQDFG-NCNYDADDPEFRENAEQELREMVRRDRNH-------PSIIMWSL 128 (298)
T ss_dssp HHHHHHHT-EEEEE-S---------BSCTSSSSTS-CTSCTTTSGGHHHHHHHHHHHHHHHHTT--------TTEEEEEE
T ss_pred HHHHhhcCCEEEEecc--------ccccCccccCC-ccccCCCCHHHHHHHHHHHHHHHHcCcCc-------Cchheeec
Confidence 9999999999987652 11111222111 01245678999998888888888887754 58999999
Q ss_pred ccccccchhhccCcHHHHHHHHHHHHhCCCcccee
Q 046146 171 ENEYQWYEQFYKGGKEYAMWAASMAVSQNTGVPWI 205 (829)
Q Consensus 171 ENEyg~~~~~y~~~~~y~~~l~~~~~~~g~~vp~~ 205 (829)
-||-. ...+++.|.+++++..-+=|..
T Consensus 129 gNE~~--------~~~~~~~l~~~~k~~DptRpv~ 155 (298)
T PF02836_consen 129 GNESD--------YREFLKELYDLVKKLDPTRPVT 155 (298)
T ss_dssp EESSH--------HHHHHHHHHHHHHHH-TTSEEE
T ss_pred CccCc--------cccchhHHHHHHHhcCCCCcee
Confidence 99983 3567888888888766554543
No 10
>PF00150 Cellulase: Cellulase (glycosyl hydrolase family 5); InterPro: IPR001547 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 5 GH5 from CAZY comprises enzymes with several known activities; endoglucanase (3.2.1.4 from EC); beta-mannanase (3.2.1.78 from EC); exo-1,3-glucanase (3.2.1.58 from EC); endo-1,6-glucanase (3.2.1.75 from EC); xylanase (3.2.1.8 from EC); endoglycoceramidase (3.2.1.123 from EC). The microbial degradation of cellulose and xylans requires several types of enzymes. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family A [] or as the glycosyl hydrolases family 5 []. One of the conserved regions in this family contains a conserved glutamic acid residue which is potentially involved [] in the catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3NDY_A 3NDZ_B 1LF1_A 1TVP_B 1TVN_A 3AYR_A 3AYS_A 1QI0_A 1W3K_A 1OCQ_A ....
Probab=98.76 E-value=1.1e-07 Score=101.51 Aligned_cols=159 Identities=17% Similarity=0.215 Sum_probs=108.3
Q ss_pred ECCEEeEEEEEEeeCCCCCcccHHHHHHHHHHcCCCEEEEceeCCccc-CCCCe-eeeccchhHHHHHHHHHHcCcEEEE
Q 046146 26 IHGRRKLFLSASIHYPRSVPAMWPELIQAAKEGGLNTIESYVFWSGHE-LSPGK-YSFEGRYDLVKFVKTVQQAGMYMLL 103 (829)
Q Consensus 26 idGkp~~~~sG~~Hy~R~~~~~W~d~l~k~ka~GlNtV~~yv~Wn~hE-p~~G~-~dF~g~~dl~~fl~~a~~~GL~Vil 103 (829)
.+|+++.+.+-+.|+... ..-++.+++||++|+|+|++.|.|...+ |.|+. ++=+.-..|+++|+.|+++||+|||
T Consensus 3 ~~G~~v~~~G~n~~w~~~--~~~~~~~~~~~~~G~n~VRi~v~~~~~~~~~~~~~~~~~~~~~ld~~v~~a~~~gi~vil 80 (281)
T PF00150_consen 3 QNGKPVNWRGFNTHWYNP--SITEADFDQLKALGFNTVRIPVGWEAYQEPNPGYNYDETYLARLDRIVDAAQAYGIYVIL 80 (281)
T ss_dssp TTSEBEEEEEEEETTSGG--GSHHHHHHHHHHTTESEEEEEEESTSTSTTSTTTSBTHHHHHHHHHHHHHHHHTT-EEEE
T ss_pred CCCCeEEeeeeecccCCC--CCHHHHHHHHHHCCCCEEEeCCCHHHhcCCCCCccccHHHHHHHHHHHHHHHhCCCeEEE
Confidence 369999999999993221 2778999999999999999999995554 67764 6666667999999999999999998
Q ss_pred ecCcccccccCCCCCCccccccCCeeeecCChhHHHHHHHHHHHHHHHHhhccccccCCCcEEEeccccccccchhh---
Q 046146 104 RIGPFVAAEYNYGGVPVWLHYIPGSVFRSYSKPFMSYMQKFMTLIVDMMKKEKLFASQGGPIILAQVENEYQWYEQF--- 180 (829)
Q Consensus 104 rpGPyicaEw~~GG~P~WL~~~p~~~~R~~~~~y~~~~~~~~~~l~~~i~~~~l~~~~gGpII~~QiENEyg~~~~~--- 180 (829)
.+-. .|.|....... ...+...+...++++.|+.+++ +..+|++++|=||.......
T Consensus 81 d~h~----------~~~w~~~~~~~---~~~~~~~~~~~~~~~~la~~y~-------~~~~v~~~el~NEP~~~~~~~~w 140 (281)
T PF00150_consen 81 DLHN----------APGWANGGDGY---GNNDTAQAWFKSFWRALAKRYK-------DNPPVVGWELWNEPNGGNDDANW 140 (281)
T ss_dssp EEEE----------STTCSSSTSTT---TTHHHHHHHHHHHHHHHHHHHT-------TTTTTEEEESSSSGCSTTSTTTT
T ss_pred Eecc----------Ccccccccccc---ccchhhHHHHHhhhhhhccccC-------CCCcEEEEEecCCccccCCcccc
Confidence 7632 26774322111 1222233444445555666654 34579999999998753210
Q ss_pred -cc---CcHHHHHHHHHHHHhCCCccceee
Q 046146 181 -YK---GGKEYAMWAASMAVSQNTGVPWIM 206 (829)
Q Consensus 181 -y~---~~~~y~~~l~~~~~~~g~~vp~~~ 206 (829)
.. .-.++++.+.+.+|+.+.+.+++.
T Consensus 141 ~~~~~~~~~~~~~~~~~~Ir~~~~~~~i~~ 170 (281)
T PF00150_consen 141 NAQNPADWQDWYQRAIDAIRAADPNHLIIV 170 (281)
T ss_dssp SHHHTHHHHHHHHHHHHHHHHTTSSSEEEE
T ss_pred ccccchhhhhHHHHHHHHHHhcCCcceeec
Confidence 00 114566667777888887766554
No 11
>PRK10150 beta-D-glucuronidase; Provisional
Probab=98.69 E-value=3.6e-07 Score=109.39 Aligned_cols=161 Identities=12% Similarity=0.033 Sum_probs=111.1
Q ss_pred cccceeEEeeCCcEEECCEEeEEEEEEeeCCC------CCcccHHHHHHHHHHcCCCEEEEceeCCcccCCCCeeeeccc
Q 046146 11 FCLAANVTYDHRSLIIHGRRKLFLSASIHYPR------SVPAMWPELIQAAKEGGLNTIESYVFWSGHELSPGKYSFEGR 84 (829)
Q Consensus 11 ~~~~~~v~~d~~~~~idGkp~~~~sG~~Hy~R------~~~~~W~d~l~k~ka~GlNtV~~yv~Wn~hEp~~G~~dF~g~ 84 (829)
=|.=++|++++..|+|||+|+++-+...|... ++++.|+.+|+.||++|+|+|++. |-|.
T Consensus 272 ~~GfR~i~~~~~~f~lNG~pv~lrG~~~h~~~~~~G~a~~~~~~~~d~~l~K~~G~N~vR~s-----h~p~--------- 337 (604)
T PRK10150 272 RFGIRSVAVKGGQFLINGKPFYFKGFGKHEDADIRGKGLDEVLNVHDHNLMKWIGANSFRTS-----HYPY--------- 337 (604)
T ss_pred eeEEEEEEEeCCEEEECCEEEEEEeeeccCCCCccCCcCCHHHHHHHHHHHHHCCCCEEEec-----cCCC---------
Confidence 34557889999999999999999998888532 467889999999999999999992 4442
Q ss_pred hhHHHHHHHHHHcCcEEEEecCcccccccCCCCCCcccc-------c-cCCeeeecCChhHHHHHHHHHHHHHHHHhhcc
Q 046146 85 YDLVKFVKTVQQAGMYMLLRIGPFVAAEYNYGGVPVWLH-------Y-IPGSVFRSYSKPFMSYMQKFMTLIVDMMKKEK 156 (829)
Q Consensus 85 ~dl~~fl~~a~~~GL~VilrpGPyicaEw~~GG~P~WL~-------~-~p~~~~R~~~~~y~~~~~~~~~~l~~~i~~~~ 156 (829)
=.+|+++|-|.||+|+--.. .-|+..|.. + .+....-..+|.+.++..+-+++++.+.+
T Consensus 338 --~~~~~~~cD~~GllV~~E~p--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~mv~r~~--- 404 (604)
T PRK10150 338 --SEEMLDLADRHGIVVIDETP--------AVGLNLSFGAGLEAGNKPKETYSEEAVNGETQQAHLQAIRELIARDK--- 404 (604)
T ss_pred --CHHHHHHHHhcCcEEEEecc--------cccccccccccccccccccccccccccchhHHHHHHHHHHHHHHhcc---
Confidence 13899999999999997652 111222221 1 11111123456676666665666655554
Q ss_pred ccccCCCcEEEeccccccccchhhccCcHHHHHHHHHHHHhCCCcccee
Q 046146 157 LFASQGGPIILAQVENEYQWYEQFYKGGKEYAMWAASMAVSQNTGVPWI 205 (829)
Q Consensus 157 l~~~~gGpII~~QiENEyg~~~~~y~~~~~y~~~l~~~~~~~g~~vp~~ 205 (829)
|...||||=|-||.... .....++++.|.+.+++..-+=|..
T Consensus 405 ----NHPSIi~Ws~gNE~~~~---~~~~~~~~~~l~~~~k~~DptR~vt 446 (604)
T PRK10150 405 ----NHPSVVMWSIANEPASR---EQGAREYFAPLAELTRKLDPTRPVT 446 (604)
T ss_pred ----CCceEEEEeeccCCCcc---chhHHHHHHHHHHHHHhhCCCCceE
Confidence 56699999999997531 1134567788888888776555543
No 12
>PF13364 BetaGal_dom4_5: Beta-galactosidase jelly roll domain; PDB: 1TG7_A 1XC6_A 3OGS_A 3OGV_A 3OGR_A 3OG2_A.
Probab=98.43 E-value=1.1e-06 Score=82.67 Aligned_cols=84 Identities=23% Similarity=0.257 Sum_probs=56.9
Q ss_pred ccccCCCCCCccEEEEEEEecCCCchhhhccCCCce-EEec-CcceEEEEEEcCEEEEEEEecc-CCceeeEEEeeeecC
Q 046146 455 VDHLNTTKDTTDYLWYTTSIIFSEDEEFLRTGSQPV-LLIE-SKGHTLHAFINQELVQGNSTYS-TGTLVFSFTALIPLK 531 (829)
Q Consensus 455 ~Eql~~t~d~~Gyl~Y~T~v~~~~~~~~~~~~~~~~-L~i~-~~~D~~~vfvng~~v~G~~~~~-~~~~~~~~~~~~~l~ 531 (829)
.+..+..++..|++|||++|+....+. ... |.+. +.+++++|||||+++ |..... ..+..+.++..+ |+
T Consensus 24 ~l~~~~~g~~~g~~~Yrg~F~~~~~~~------~~~~l~~~~g~~~~~~vwVNG~~~-G~~~~~~g~q~tf~~p~~i-l~ 95 (111)
T PF13364_consen 24 VLYASDYGFHAGYLWYRGTFTGTGQDT------SLTPLNIQGGNAFRASVWVNGWFL-GSYWPGIGPQTTFSVPAGI-LK 95 (111)
T ss_dssp STCCGCGTSSSCEEEEEEEEETTTEEE------EEE-EEECSSTTEEEEEEETTEEE-EEEETTTECCEEEEE-BTT-BT
T ss_pred eeccCccccCCCCEEEEEEEeCCCcce------eEEEEeccCCCceEEEEEECCEEe-eeecCCCCccEEEEeCcee-ec
Confidence 455566667899999999997543331 123 4443 689999999999999 998732 223334444333 55
Q ss_pred CCccEEEEEEecCCc
Q 046146 532 AGKNKIDLLSMTVGL 546 (829)
Q Consensus 532 ~g~~~L~ILven~Gr 546 (829)
.+.+.|.+|+.+||+
T Consensus 96 ~~n~v~~vl~~~~g~ 110 (111)
T PF13364_consen 96 YGNNVLVVLWDNMGH 110 (111)
T ss_dssp TCEEEEEEEEE-STT
T ss_pred CCCEEEEEEEeCCCC
Confidence 567788999999996
No 13
>PRK10340 ebgA cryptic beta-D-galactosidase subunit alpha; Reviewed
Probab=98.32 E-value=8.5e-06 Score=102.72 Aligned_cols=155 Identities=10% Similarity=0.001 Sum_probs=104.3
Q ss_pred eeccccceeEEeeCCcEEECCEEeEEEEEEeeCCC------CCcccHHHHHHHHHHcCCCEEEEceeCCcccCCCCeeee
Q 046146 8 FNSFCLAANVTYDHRSLIIHGRRKLFLSASIHYPR------SVPAMWPELIQAAKEGGLNTIESYVFWSGHELSPGKYSF 81 (829)
Q Consensus 8 ~~~~~~~~~v~~d~~~~~idGkp~~~~sG~~Hy~R------~~~~~W~d~l~k~ka~GlNtV~~yv~Wn~hEp~~G~~dF 81 (829)
...=+.=++|+++++.|+|||||+++-+...|-.. ++++.|+.+|+.||++|+|+|++- |-|.
T Consensus 311 ~~~~~GfR~iei~~~~f~lNGkpi~lrGvnrh~~~p~~G~a~~~e~~~~dl~lmK~~g~NavR~s-----HyP~------ 379 (1021)
T PRK10340 311 VPQRVGFRDIKVRDGLFWINNRYVKLHGVNRHDNDHRKGRAVGMDRVEKDIQLMKQHNINSVRTA-----HYPN------ 379 (1021)
T ss_pred EEeeeEEEEEEEECCEEEECCEEEEEEEeecCCCCcccCccCCHHHHHHHHHHHHHCCCCEEEec-----CCCC------
Confidence 33445567889999999999999999999888432 477899999999999999999983 4332
Q ss_pred ccchhHHHHHHHHHHcCcEEEEecCcccccccCCCCCCccccccCCeeeecCChhHHHHHHHHHHHHHHHHhhccccccC
Q 046146 82 EGRYDLVKFVKTVQQAGMYMLLRIGPFVAAEYNYGGVPVWLHYIPGSVFRSYSKPFMSYMQKFMTLIVDMMKKEKLFASQ 161 (829)
Q Consensus 82 ~g~~dl~~fl~~a~~~GL~VilrpGPyicaEw~~GG~P~WL~~~p~~~~R~~~~~y~~~~~~~~~~l~~~i~~~~l~~~~ 161 (829)
=.+|+++|-|.||+|+--. |..|. |++ ... +...-+++|.+.++..+=+++++.+. .|
T Consensus 380 -----~~~fydlcDe~GllV~dE~-~~e~~-----g~~--~~~--~~~~~~~~p~~~~~~~~~~~~mV~Rd-------rN 437 (1021)
T PRK10340 380 -----DPRFYELCDIYGLFVMAET-DVESH-----GFA--NVG--DISRITDDPQWEKVYVDRIVRHIHAQ-------KN 437 (1021)
T ss_pred -----CHHHHHHHHHCCCEEEECC-ccccc-----Ccc--ccc--ccccccCCHHHHHHHHHHHHHHHHhC-------CC
Confidence 2389999999999999875 22221 221 000 01112466777655444344454444 45
Q ss_pred CCcEEEeccccccccchhhccCcHHHHHHHHHHHHhCCCccc
Q 046146 162 GGPIILAQVENEYQWYEQFYKGGKEYAMWAASMAVSQNTGVP 203 (829)
Q Consensus 162 gGpII~~QiENEyg~~~~~y~~~~~y~~~l~~~~~~~g~~vp 203 (829)
...||||=+-||-+. + . .++.+.+.+++..-+=|
T Consensus 438 HPSIi~WslGNE~~~-----g--~-~~~~~~~~~k~~DptR~ 471 (1021)
T PRK10340 438 HPSIIIWSLGNESGY-----G--C-NIRAMYHAAKALDDTRL 471 (1021)
T ss_pred CCEEEEEECccCccc-----c--H-HHHHHHHHHHHhCCCce
Confidence 679999999999763 2 1 23556666666554433
No 14
>PRK09525 lacZ beta-D-galactosidase; Reviewed
Probab=98.32 E-value=7.9e-06 Score=102.92 Aligned_cols=149 Identities=17% Similarity=0.120 Sum_probs=103.3
Q ss_pred ccceeEEeeCCcEEECCEEeEEEEEEeeCC------CCCcccHHHHHHHHHHcCCCEEEEceeCCcccCCCCeeeeccch
Q 046146 12 CLAANVTYDHRSLIIHGRRKLFLSASIHYP------RSVPAMWPELIQAAKEGGLNTIESYVFWSGHELSPGKYSFEGRY 85 (829)
Q Consensus 12 ~~~~~v~~d~~~~~idGkp~~~~sG~~Hy~------R~~~~~W~d~l~k~ka~GlNtV~~yv~Wn~hEp~~G~~dF~g~~ 85 (829)
+.=++|++++..|+|||+|+++-+...|-. +++++.|+.+|+.||++|+|+|++- |-|.
T Consensus 331 ~GfR~iei~~~~f~LNGkpi~lrGvn~h~~~p~~G~a~t~e~~~~di~lmK~~g~NaVR~s-----HyP~---------- 395 (1027)
T PRK09525 331 VGFRKVEIENGLLKLNGKPLLIRGVNRHEHHPEHGQVMDEETMVQDILLMKQHNFNAVRCS-----HYPN---------- 395 (1027)
T ss_pred EEEEEEEEECCEEEECCEEEEEEEeEccccCcccCccCCHHHHHHHHHHHHHCCCCEEEec-----CCCC----------
Confidence 455778899999999999999999999842 3588899999999999999999992 4332
Q ss_pred hHHHHHHHHHHcCcEEEEecCcccccccCCCCCCccccccCCeeeecCChhHHHHHHHHHHHHHHHHhhccccccCCCcE
Q 046146 86 DLVKFVKTVQQAGMYMLLRIGPFVAAEYNYGGVPVWLHYIPGSVFRSYSKPFMSYMQKFMTLIVDMMKKEKLFASQGGPI 165 (829)
Q Consensus 86 dl~~fl~~a~~~GL~VilrpGPyicaEw~~GG~P~WL~~~p~~~~R~~~~~y~~~~~~~~~~l~~~i~~~~l~~~~gGpI 165 (829)
=.+|+++|-|.||+|+--.. . | ..|-.|.. . =.+||.|++++.+=+.+++.+.+ |...|
T Consensus 396 -~p~fydlcDe~GilV~dE~~-~---e-~hg~~~~~---~-----~~~dp~~~~~~~~~~~~mV~Rdr-------NHPSI 454 (1027)
T PRK09525 396 -HPLWYELCDRYGLYVVDEAN-I---E-THGMVPMN---R-----LSDDPRWLPAMSERVTRMVQRDR-------NHPSI 454 (1027)
T ss_pred -CHHHHHHHHHcCCEEEEecC-c---c-ccCCcccc---C-----CCCCHHHHHHHHHHHHHHHHhCC-------CCCEE
Confidence 24889999999999997752 1 1 11111210 0 13567777665554444544444 56799
Q ss_pred EEeccccccccchhhccCcHHHHHHHHHHHHhCCCccce
Q 046146 166 ILAQVENEYQWYEQFYKGGKEYAMWAASMAVSQNTGVPW 204 (829)
Q Consensus 166 I~~QiENEyg~~~~~y~~~~~y~~~l~~~~~~~g~~vp~ 204 (829)
|||=+-||-+. + ...+.+.+.+++..-+=|.
T Consensus 455 i~WSlgNE~~~-----g---~~~~~l~~~~k~~DptRpV 485 (1027)
T PRK09525 455 IIWSLGNESGH-----G---ANHDALYRWIKSNDPSRPV 485 (1027)
T ss_pred EEEeCccCCCc-----C---hhHHHHHHHHHhhCCCCcE
Confidence 99999999763 2 1235555666655444444
No 15
>COG3250 LacZ Beta-galactosidase/beta-glucuronidase [Carbohydrate transport and metabolism]
Probab=98.29 E-value=9e-06 Score=99.22 Aligned_cols=122 Identities=15% Similarity=0.166 Sum_probs=97.6
Q ss_pred ccceeEEeeCCcEEECCEEeEEEEEEeeCCC-----C-CcccHHHHHHHHHHcCCCEEEEceeCCcccCCCCeeeeccch
Q 046146 12 CLAANVTYDHRSLIIHGRRKLFLSASIHYPR-----S-VPAMWPELIQAAKEGGLNTIESYVFWSGHELSPGKYSFEGRY 85 (829)
Q Consensus 12 ~~~~~v~~d~~~~~idGkp~~~~sG~~Hy~R-----~-~~~~W~d~l~k~ka~GlNtV~~yv~Wn~hEp~~G~~dF~g~~ 85 (829)
+.=++|++++..|.|||||+++-+..-|.+- . .++.-+++|++||++|+|+|+|- |-|..
T Consensus 281 iGfR~iei~~~~~~iNGkpvf~kGvnrHe~~~~~G~~~~~~~~~~dl~lmk~~n~N~vRts-----HyP~~--------- 346 (808)
T COG3250 281 IGFRTVEIKDGLLLINGKPVFIRGVNRHEDDPILGRVTDEDAMERDLKLMKEANMNSVRTS-----HYPNS--------- 346 (808)
T ss_pred eccEEEEEECCeEEECCeEEEEeeeecccCCCccccccCHHHHHHHHHHHHHcCCCEEEec-----CCCCC---------
Confidence 4457899999999999999999999999654 3 34447899999999999999997 55543
Q ss_pred hHHHHHHHHHHcCcEEEEecCcccccccCCCCCCccccccCCeeeecCChhHHHHHHHHHHHHHHHHhhccccccCCCcE
Q 046146 86 DLVKFVKTVQQAGMYMLLRIGPFVAAEYNYGGVPVWLHYIPGSVFRSYSKPFMSYMQKFMTLIVDMMKKEKLFASQGGPI 165 (829)
Q Consensus 86 dl~~fl~~a~~~GL~VilrpGPyicaEw~~GG~P~WL~~~p~~~~R~~~~~y~~~~~~~~~~l~~~i~~~~l~~~~gGpI 165 (829)
..|++||.+.||+||--+ ..||.. .| +|+.|++.+..=+++++++.+. ...|
T Consensus 347 --~~~ydLcDelGllV~~Ea----~~~~~~--~~-------------~~~~~~k~~~~~i~~mver~kn-------HPSI 398 (808)
T COG3250 347 --EEFYDLCDELGLLVIDEA----MIETHG--MP-------------DDPEWRKEVSEEVRRMVERDRN-------HPSI 398 (808)
T ss_pred --HHHHHHHHHhCcEEEEec----chhhcC--CC-------------CCcchhHHHHHHHHHHHHhccC-------CCcE
Confidence 578999999999999886 223322 22 7888888887767777777664 5589
Q ss_pred EEeccccccc
Q 046146 166 ILAQVENEYQ 175 (829)
Q Consensus 166 I~~QiENEyg 175 (829)
|||=+-||-|
T Consensus 399 iiWs~gNE~~ 408 (808)
T COG3250 399 IIWSLGNESG 408 (808)
T ss_pred EEEecccccc
Confidence 9999999977
No 16
>PF02837 Glyco_hydro_2_N: Glycosyl hydrolases family 2, sugar binding domain; InterPro: IPR006104 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 2 GH2 from CAZY comprises enzymes with several known activities; beta-galactosidase (3.2.1.23 from EC); beta-mannosidase (3.2.1.25 from EC); beta-glucuronidase (3.2.1.31 from EC). These enzymes contain a conserved glutamic acid residue which has been shown [], in Escherichia coli lacZ (P00722 from SWISSPROT), to be the general acid/base catalyst in the active site of the enzyme. This domain has a jelly-roll fold [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3DEC_A 3OB8_A 3OBA_A 3CMG_A 3FN9_C 2VZU_A 2X09_A 2VZO_A 2X05_A 2VZV_B ....
Probab=97.87 E-value=8.7e-05 Score=73.82 Aligned_cols=98 Identities=22% Similarity=0.303 Sum_probs=68.2
Q ss_pred CCCccEEEEEEEecCCCchhhhccCCCceEEecCcceEEEEEEcCEEEEEEEeccCCceeeEEEeeeecCCCc-cEEEEE
Q 046146 462 KDTTDYLWYTTSIIFSEDEEFLRTGSQPVLLIESKGHTLHAFINQELVQGNSTYSTGTLVFSFTALIPLKAGK-NKIDLL 540 (829)
Q Consensus 462 ~d~~Gyl~Y~T~v~~~~~~~~~~~~~~~~L~i~~~~D~~~vfvng~~v~G~~~~~~~~~~~~~~~~~~l~~g~-~~L~IL 540 (829)
....|+.|||++|.++.+. .+.+..|.+.++.+.+.|||||+++ |...+.. ..+.+++.-.++.|. |+|.|.
T Consensus 64 ~~~~~~~wYr~~f~lp~~~----~~~~~~L~f~gv~~~a~v~vNG~~v-g~~~~~~--~~~~~dIt~~l~~g~~N~l~V~ 136 (167)
T PF02837_consen 64 WDYSGYAWYRRTFTLPADW----KGKRVFLRFEGVDYAAEVYVNGKLV-GSHEGGY--TPFEFDITDYLKPGEENTLAVR 136 (167)
T ss_dssp STCCSEEEEEEEEEESGGG----TTSEEEEEESEEESEEEEEETTEEE-EEEESTT--S-EEEECGGGSSSEEEEEEEEE
T ss_pred cccCceEEEEEEEEeCchh----cCceEEEEeccceEeeEEEeCCeEE-eeeCCCc--CCeEEeChhhccCCCCEEEEEE
Confidence 4578999999999886532 2355678999999999999999999 9876533 235555555577787 999999
Q ss_pred EecCCcccccCCC-CccCccce-EEEec
Q 046146 541 SMTVGLPSAGPFY-EWTGTGLT-SVKIK 566 (829)
Q Consensus 541 ven~Gr~NyG~~~-~~~~kGI~-~V~l~ 566 (829)
|.+.....+-+.+ .....||. +|.|.
T Consensus 137 v~~~~~~~~~~~~~~~~~~GI~r~V~L~ 164 (167)
T PF02837_consen 137 VDNWPDGSTIPGFDYFNYAGIWRPVWLE 164 (167)
T ss_dssp EESSSGGGCGBSSSEEE--EEESEEEEE
T ss_pred EeecCCCceeecCcCCccCccccEEEEE
Confidence 9865543331111 12457998 88873
No 17
>smart00633 Glyco_10 Glycosyl hydrolase family 10.
Probab=97.84 E-value=5.5e-05 Score=81.03 Aligned_cols=115 Identities=19% Similarity=0.347 Sum_probs=86.2
Q ss_pred CCcccCCCCeeeeccchhHHHHHHHHHHcCcEEEEecCcccccccCCCCCCccccccCCeeeecCChhHHHHHHHHHHHH
Q 046146 69 WSGHELSPGKYSFEGRYDLVKFVKTVQQAGMYMLLRIGPFVAAEYNYGGVPVWLHYIPGSVFRSYSKPFMSYMQKFMTLI 148 (829)
Q Consensus 69 Wn~hEp~~G~~dF~g~~dl~~fl~~a~~~GL~VilrpGPyicaEw~~GG~P~WL~~~p~~~~R~~~~~y~~~~~~~~~~l 148 (829)
|...||+||+|||+ .++++++.|+++||.| |..+-+ |.. ..|.|+...+ .+..++++++|+..+
T Consensus 3 W~~~ep~~G~~n~~---~~D~~~~~a~~~gi~v--~gH~l~---W~~-~~P~W~~~~~-------~~~~~~~~~~~i~~v 66 (254)
T smart00633 3 WDSTEPSRGQFNFS---GADAIVNFAKENGIKV--RGHTLV---WHS-QTPDWVFNLS-------KETLLARLENHIKTV 66 (254)
T ss_pred cccccCCCCccChH---HHHHHHHHHHHCCCEE--EEEEEe---ecc-cCCHhhhcCC-------HHHHHHHHHHHHHHH
Confidence 89999999999999 8999999999999987 433222 433 6899987533 345677888888888
Q ss_pred HHHHhhccccccCCCcEEEeccccccccchh------hc-c-CcHHHHHHHHHHHHhCCCccceeeec
Q 046146 149 VDMMKKEKLFASQGGPIILAQVENEYQWYEQ------FY-K-GGKEYAMWAASMAVSQNTGVPWIMCQ 208 (829)
Q Consensus 149 ~~~i~~~~l~~~~gGpII~~QiENEyg~~~~------~y-~-~~~~y~~~l~~~~~~~g~~vp~~~~~ 208 (829)
+.+++ |.|..++|=||--.... .+ . .+.+|+...-+.+|+..-++.++.++
T Consensus 67 ~~ry~---------g~i~~wdV~NE~~~~~~~~~~~~~w~~~~G~~~i~~af~~ar~~~P~a~l~~Nd 125 (254)
T smart00633 67 VGRYK---------GKIYAWDVVNEALHDNGSGLRRSVWYQILGEDYIEKAFRYAREADPDAKLFYND 125 (254)
T ss_pred HHHhC---------CcceEEEEeeecccCCCcccccchHHHhcChHHHHHHHHHHHHhCCCCEEEEec
Confidence 88775 56889999999532110 01 1 24589988889999988888887754
No 18
>PLN02705 beta-amylase
Probab=97.76 E-value=8.2e-05 Score=86.17 Aligned_cols=81 Identities=15% Similarity=0.281 Sum_probs=64.5
Q ss_pred CcccHHHHHHHHHHcCCCEEEEceeCCcccC-CCCeeeeccchhHHHHHHHHHHcCcE--EEEecCcccccccCCC----
Q 046146 44 VPAMWPELIQAAKEGGLNTIESYVFWSGHEL-SPGKYSFEGRYDLVKFVKTVQQAGMY--MLLRIGPFVAAEYNYG---- 116 (829)
Q Consensus 44 ~~~~W~d~l~k~ka~GlNtV~~yv~Wn~hEp-~~G~~dF~g~~dl~~fl~~a~~~GL~--VilrpGPyicaEw~~G---- 116 (829)
.++.-+..|+++|++|+..|.+-|.|.+.|. .|++|||+| ..+++++++++||+ |||.+ .-|+- +-|
T Consensus 266 ~~~al~a~L~aLK~aGVdGVmvDVWWGiVE~~~P~~YdWsg---Y~~L~~mvr~~GLKlqvVmSF--HqCGG-NVGD~~~ 339 (681)
T PLN02705 266 DPEGVRQELSHMKSLNVDGVVVDCWWGIVEGWNPQKYVWSG---YRELFNIIREFKLKLQVVMAF--HEYGG-NASGNVM 339 (681)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeeeeeEeecCCCCcCCcHH---HHHHHHHHHHcCCeEEEEEEe--eccCC-CCCCccc
Confidence 4455788999999999999999999999998 599999996 66779999999999 45554 44544 223
Q ss_pred -CCCccccc----cCCeee
Q 046146 117 -GVPVWLHY----IPGSVF 130 (829)
Q Consensus 117 -G~P~WL~~----~p~~~~ 130 (829)
-||.|+.+ +|+|.+
T Consensus 340 IPLP~WV~e~g~~nPDiff 358 (681)
T PLN02705 340 ISLPQWVLEIGKDNQDIFF 358 (681)
T ss_pred ccCCHHHHHhcccCCCcee
Confidence 38999985 577643
No 19
>PLN02905 beta-amylase
Probab=97.74 E-value=9.6e-05 Score=85.83 Aligned_cols=79 Identities=16% Similarity=0.397 Sum_probs=62.8
Q ss_pred ccHHHHHHHHHHcCCCEEEEceeCCcccC-CCCeeeeccchhHHHHHHHHHHcCcEE--EEecCcccccccCCC-----C
Q 046146 46 AMWPELIQAAKEGGLNTIESYVFWSGHEL-SPGKYSFEGRYDLVKFVKTVQQAGMYM--LLRIGPFVAAEYNYG-----G 117 (829)
Q Consensus 46 ~~W~d~l~k~ka~GlNtV~~yv~Wn~hEp-~~G~~dF~g~~dl~~fl~~a~~~GL~V--ilrpGPyicaEw~~G-----G 117 (829)
+.-+..|+++|++|+..|.+-|.|.+.|. .|++|||+| ..+++++++++||++ ||.+ .-|+- +-| -
T Consensus 286 ~al~a~L~aLK~aGVdGVmvDVWWGiVE~~gP~~YdWsg---Y~~L~~mvr~~GLKlqvVMSF--HqCGG-NVGD~~~IP 359 (702)
T PLN02905 286 DGLLKQLRILKSINVDGVKVDCWWGIVEAHAPQEYNWNG---YKRLFQMVRELKLKLQVVMSF--HECGG-NVGDDVCIP 359 (702)
T ss_pred HHHHHHHHHHHHcCCCEEEEeeeeeeeecCCCCcCCcHH---HHHHHHHHHHcCCeEEEEEEe--cccCC-CCCCccccc
Confidence 44577899999999999999999999998 699999996 667899999999994 4554 44443 222 3
Q ss_pred CCccccc----cCCeee
Q 046146 118 VPVWLHY----IPGSVF 130 (829)
Q Consensus 118 ~P~WL~~----~p~~~~ 130 (829)
||.|+.+ +|+|.+
T Consensus 360 LP~WV~e~g~~nPDiff 376 (702)
T PLN02905 360 LPHWVAEIGRSNPDIFF 376 (702)
T ss_pred CCHHHHHhhhcCCCceE
Confidence 8999985 577644
No 20
>PLN02801 beta-amylase
Probab=97.70 E-value=0.00012 Score=83.72 Aligned_cols=81 Identities=20% Similarity=0.423 Sum_probs=64.1
Q ss_pred CcccHHHHHHHHHHcCCCEEEEceeCCcccC-CCCeeeeccchhHHHHHHHHHHcCcEE--EEecCcccccccCCC----
Q 046146 44 VPAMWPELIQAAKEGGLNTIESYVFWSGHEL-SPGKYSFEGRYDLVKFVKTVQQAGMYM--LLRIGPFVAAEYNYG---- 116 (829)
Q Consensus 44 ~~~~W~d~l~k~ka~GlNtV~~yv~Wn~hEp-~~G~~dF~g~~dl~~fl~~a~~~GL~V--ilrpGPyicaEw~~G---- 116 (829)
.++.-+..|+++|++|+..|.+-|.|.+.|. .|++|||+| -.+++++++++||++ ||.+ .-|+- +-|
T Consensus 35 ~~~~l~~~L~~LK~~GVdGVmvDVWWGiVE~~~P~~YdWsg---Y~~l~~mvr~~GLKlq~vmSF--HqCGG-NVGD~~~ 108 (517)
T PLN02801 35 DEEGLEKQLKRLKEAGVDGVMVDVWWGIVESKGPKQYDWSA---YRSLFELVQSFGLKIQAIMSF--HQCGG-NVGDAVN 108 (517)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeeeeeeeccCCCCccCcHH---HHHHHHHHHHcCCeEEEEEEe--cccCC-CCCCccc
Confidence 4556788999999999999999999999998 599999996 667799999999995 4554 33433 222
Q ss_pred -CCCccccc----cCCeee
Q 046146 117 -GVPVWLHY----IPGSVF 130 (829)
Q Consensus 117 -G~P~WL~~----~p~~~~ 130 (829)
-||.|+.+ +|++.+
T Consensus 109 IpLP~WV~~~g~~~pDi~f 127 (517)
T PLN02801 109 IPIPQWVRDVGDSDPDIFY 127 (517)
T ss_pred ccCCHHHHHhhccCCCcee
Confidence 38999985 577643
No 21
>PLN02803 beta-amylase
Probab=97.67 E-value=0.00016 Score=83.08 Aligned_cols=114 Identities=23% Similarity=0.451 Sum_probs=79.3
Q ss_pred ccHHHHHHHHHHcCCCEEEEceeCCcccCC-CCeeeeccchhHHHHHHHHHHcCcEE--EEecCcccccccCCC-----C
Q 046146 46 AMWPELIQAAKEGGLNTIESYVFWSGHELS-PGKYSFEGRYDLVKFVKTVQQAGMYM--LLRIGPFVAAEYNYG-----G 117 (829)
Q Consensus 46 ~~W~d~l~k~ka~GlNtV~~yv~Wn~hEp~-~G~~dF~g~~dl~~fl~~a~~~GL~V--ilrpGPyicaEw~~G-----G 117 (829)
+.-+..|+++|++|+..|.+-|.|.+.|.. |++|||+| -.+++++++++||++ ||.+ .-|+- +-| -
T Consensus 107 ~~l~~~L~~LK~~GVdGVmvDVWWGiVE~~~p~~YdWsg---Y~~l~~mvr~~GLKlq~vmSF--HqCGG-NVGD~~~Ip 180 (548)
T PLN02803 107 RAMNASLMALRSAGVEGVMVDAWWGLVEKDGPMKYNWEG---YAELVQMVQKHGLKLQVVMSF--HQCGG-NVGDSCSIP 180 (548)
T ss_pred HHHHHHHHHHHHcCCCEEEEEeeeeeeccCCCCcCCcHH---HHHHHHHHHHcCCeEEEEEEe--cccCC-CCCCccccc
Confidence 445778999999999999999999999995 99999996 667799999999995 4554 33433 222 3
Q ss_pred CCccccc----cCCeeeecC----ChhH----------------HHHHHHHHHHHHHHHhhccccccCCCcEEEecc
Q 046146 118 VPVWLHY----IPGSVFRSY----SKPF----------------MSYMQKFMTLIVDMMKKEKLFASQGGPIILAQV 170 (829)
Q Consensus 118 ~P~WL~~----~p~~~~R~~----~~~y----------------~~~~~~~~~~l~~~i~~~~l~~~~gGpII~~Qi 170 (829)
||.|+.+ +|+|.+... |+.| ++.-..|++..-..++ +++ ++.|.-|||
T Consensus 181 LP~WV~e~~~~~pDi~ftDr~G~rn~EyLSlg~D~~pvl~GRTplq~Y~Dfm~SFr~~F~--~~l---~~~I~eI~V 252 (548)
T PLN02803 181 LPPWVLEEMSKNPDLVYTDRSGRRNPEYISLGCDSLPVLRGRTPIQVYSDYMRSFRERFK--DYL---GGVIAEIQV 252 (548)
T ss_pred CCHHHHHhhhcCCCceEecCCCCcccceeccccccchhccCCCHHHHHHHHHHHHHHHHH--HHh---cCceEEEEe
Confidence 8999975 577754211 1111 2333445555555555 232 478888887
No 22
>TIGR03356 BGL beta-galactosidase.
Probab=97.66 E-value=0.0001 Score=84.91 Aligned_cols=97 Identities=13% Similarity=0.182 Sum_probs=79.9
Q ss_pred ccHHHHHHHHHHcCCCEEEEceeCCcccCC-CCeeeeccchhHHHHHHHHHHcCcEEEEecCcccccccCCCCCCccccc
Q 046146 46 AMWPELIQAAKEGGLNTIESYVFWSGHELS-PGKYSFEGRYDLVKFVKTVQQAGMYMLLRIGPFVAAEYNYGGVPVWLHY 124 (829)
Q Consensus 46 ~~W~d~l~k~ka~GlNtV~~yv~Wn~hEp~-~G~~dF~g~~dl~~fl~~a~~~GL~VilrpGPyicaEw~~GG~P~WL~~ 124 (829)
..|+++|+.||++|+|++++-|.|...+|. +|++|.+|..-.+++|+.+.++||.+|+--= .-.+|.||.+
T Consensus 54 ~~y~eDi~l~~~~G~~~~R~si~Wsri~p~g~~~~n~~~~~~y~~~i~~l~~~gi~pivtL~--------Hfd~P~~l~~ 125 (427)
T TIGR03356 54 HRYEEDVALMKELGVDAYRFSIAWPRIFPEGTGPVNPKGLDFYDRLVDELLEAGIEPFVTLY--------HWDLPQALED 125 (427)
T ss_pred HhHHHHHHHHHHcCCCeEEcccchhhcccCCCCCcCHHHHHHHHHHHHHHHHcCCeeEEeec--------cCCccHHHHh
Confidence 458999999999999999999999999999 7999998888999999999999999876642 2458999986
Q ss_pred cCCeeeecCChhHHHHHHHHHHHHHHHHhh
Q 046146 125 IPGSVFRSYSKPFMSYMQKFMTLIVDMMKK 154 (829)
Q Consensus 125 ~p~~~~R~~~~~y~~~~~~~~~~l~~~i~~ 154 (829)
..+- .++...++..+|.+.+++++++
T Consensus 126 ~gGw----~~~~~~~~f~~ya~~~~~~~~d 151 (427)
T TIGR03356 126 RGGW----LNRDTAEWFAEYAAVVAERLGD 151 (427)
T ss_pred cCCC----CChHHHHHHHHHHHHHHHHhCC
Confidence 5443 3466667777777777777763
No 23
>PF03198 Glyco_hydro_72: Glucanosyltransferase; InterPro: IPR004886 This family is a group of yeast glycolipid proteins anchored to the membrane. It includes Candida albicans (Yeast) pH-regulated protein, which is required for apical growth and plays a role in morphogenesis and Saccharomyces cerevisiae glycolipid anchored surface protein.; PDB: 2W61_A 2W62_A 2W63_A.
Probab=97.66 E-value=0.00059 Score=74.48 Aligned_cols=151 Identities=16% Similarity=0.184 Sum_probs=82.0
Q ss_pred eeEEeeCCcEE--ECCEEeEEEEEEeeCCCC-----------CcccHHHHHHHHHHcCCCEEEEceeCCcccCCCCeeee
Q 046146 15 ANVTYDHRSLI--IHGRRKLFLSASIHYPRS-----------VPAMWPELIQAAKEGGLNTIESYVFWSGHELSPGKYSF 81 (829)
Q Consensus 15 ~~v~~d~~~~~--idGkp~~~~sG~~Hy~R~-----------~~~~W~d~l~k~ka~GlNtV~~yv~Wn~hEp~~G~~dF 81 (829)
..|+..++.|+ .+|++|+|-+=.+.+--. .++.|+.++..||++|+|||++|-.
T Consensus 9 ~pI~ikG~kff~~~~g~~F~ikGVaYQp~~~~~~~~~~DPLad~~~C~rDi~~l~~LgiNtIRVY~v------------- 75 (314)
T PF03198_consen 9 PPIEIKGNKFFYSKNGTRFFIKGVAYQPGGSSEPSNYIDPLADPEACKRDIPLLKELGINTIRVYSV------------- 75 (314)
T ss_dssp --EEEETTEEEETTT--B--EEEEE----------SS--GGG-HHHHHHHHHHHHHHT-SEEEES---------------
T ss_pred CCEEEECCEeEECCCCCEEEEeeEEcccCCCCCCccCcCcccCHHHHHHhHHHHHHcCCCEEEEEEe-------------
Confidence 46788899999 789999998877665332 4678999999999999999999942
Q ss_pred ccchhHHHHHHHHHHcCcEEEEecCcccccccCCCCCCccccccCCeeeecCCh--hHH-HHHHHHHHHHHHHHhhcccc
Q 046146 82 EGRYDLVKFVKTVQQAGMYMLLRIGPFVAAEYNYGGVPVWLHYIPGSVFRSYSK--PFM-SYMQKFMTLIVDMMKKEKLF 158 (829)
Q Consensus 82 ~g~~dl~~fl~~a~~~GL~VilrpGPyicaEw~~GG~P~WL~~~p~~~~R~~~~--~y~-~~~~~~~~~l~~~i~~~~l~ 158 (829)
+-..|=++++++.+++|+||||-.+. | +..+-..+| .|- ...++|+ +++..++++
T Consensus 76 dp~~nHd~CM~~~~~aGIYvi~Dl~~-----------p-------~~sI~r~~P~~sw~~~l~~~~~-~vid~fa~Y--- 133 (314)
T PF03198_consen 76 DPSKNHDECMSAFADAGIYVILDLNT-----------P-------NGSINRSDPAPSWNTDLLDRYF-AVIDAFAKY--- 133 (314)
T ss_dssp -TTS--HHHHHHHHHTT-EEEEES-B-----------T-------TBS--TTS------HHHHHHHH-HHHHHHTT----
T ss_pred CCCCCHHHHHHHHHhCCCEEEEecCC-----------C-------CccccCCCCcCCCCHHHHHHHH-HHHHHhccC---
Confidence 11237789999999999999998752 2 222333444 442 2333333 455666643
Q ss_pred ccCCCcEEEeccccccccchhhcc---CcHHHHHHHHHHHHhCCC-ccce
Q 046146 159 ASQGGPIILAQVENEYQWYEQFYK---GGKEYAMWAASMAVSQNT-GVPW 204 (829)
Q Consensus 159 ~~~gGpII~~QiENEyg~~~~~y~---~~~~y~~~l~~~~~~~g~-~vp~ 204 (829)
.+++++=+-||--.-...-. .-++..+.+++-+++.+. .+|+
T Consensus 134 ----~N~LgFf~GNEVin~~~~t~aap~vKAavRD~K~Yi~~~~~R~IPV 179 (314)
T PF03198_consen 134 ----DNTLGFFAGNEVINDASNTNAAPYVKAAVRDMKAYIKSKGYRSIPV 179 (314)
T ss_dssp ----TTEEEEEEEESSS-STT-GGGHHHHHHHHHHHHHHHHHSSS----E
T ss_pred ----CceEEEEecceeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCce
Confidence 38999999999864211000 124444455555555554 4554
No 24
>PLN00197 beta-amylase; Provisional
Probab=97.66 E-value=0.00017 Score=83.16 Aligned_cols=81 Identities=23% Similarity=0.456 Sum_probs=64.5
Q ss_pred CcccHHHHHHHHHHcCCCEEEEceeCCcccC-CCCeeeeccchhHHHHHHHHHHcCcEE--EEecCcccccccCCC----
Q 046146 44 VPAMWPELIQAAKEGGLNTIESYVFWSGHEL-SPGKYSFEGRYDLVKFVKTVQQAGMYM--LLRIGPFVAAEYNYG---- 116 (829)
Q Consensus 44 ~~~~W~d~l~k~ka~GlNtV~~yv~Wn~hEp-~~G~~dF~g~~dl~~fl~~a~~~GL~V--ilrpGPyicaEw~~G---- 116 (829)
.++.-+..|+++|++|+..|.+-|.|.+.|. .|++|||+| ..+++++++++||++ ||.+ .-|+- +-|
T Consensus 125 ~~~~l~~~L~~LK~~GVdGVmvDvWWGiVE~~~p~~YdWsg---Y~~L~~mvr~~GLKlq~VmSF--HqCGG-NVGD~~~ 198 (573)
T PLN00197 125 RRKAMKASLQALKSAGVEGIMMDVWWGLVERESPGVYNWGG---YNELLEMAKRHGLKVQAVMSF--HQCGG-NVGDSCT 198 (573)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeeeeeeeccCCCCcCCcHH---HHHHHHHHHHcCCeEEEEEEe--cccCC-CCCCccc
Confidence 4455788999999999999999999999998 699999996 667799999999994 4554 34443 222
Q ss_pred -CCCccccc----cCCeee
Q 046146 117 -GVPVWLHY----IPGSVF 130 (829)
Q Consensus 117 -G~P~WL~~----~p~~~~ 130 (829)
-||.|+.+ +|++.+
T Consensus 199 IpLP~WV~~~g~~dpDiff 217 (573)
T PLN00197 199 IPLPKWVVEEVDKDPDLAY 217 (573)
T ss_pred ccCCHHHHHhhccCCCcee
Confidence 38999975 577744
No 25
>PLN02161 beta-amylase
Probab=97.61 E-value=0.00023 Score=81.38 Aligned_cols=81 Identities=17% Similarity=0.356 Sum_probs=62.6
Q ss_pred ccHHHHHHHHHHcCCCEEEEceeCCcccC-CCCeeeeccchhHHHHHHHHHHcCcEEEEecCcccccccCCC-----CCC
Q 046146 46 AMWPELIQAAKEGGLNTIESYVFWSGHEL-SPGKYSFEGRYDLVKFVKTVQQAGMYMLLRIGPFVAAEYNYG-----GVP 119 (829)
Q Consensus 46 ~~W~d~l~k~ka~GlNtV~~yv~Wn~hEp-~~G~~dF~g~~dl~~fl~~a~~~GL~VilrpGPyicaEw~~G-----G~P 119 (829)
+.-+..|+++|++|+..|.+-|.|.+.|. .|++|||+| -.+++++++++||++.+--.=.-|+- +-| -||
T Consensus 117 ~al~~~L~~LK~~GVdGVmvDVWWGiVE~~~p~~YdWsg---Y~~l~~mvr~~GLKlq~vmSFHqCGG-NvGd~~~IpLP 192 (531)
T PLN02161 117 KALTVSLKALKLAGVHGIAVEVWWGIVERFSPLEFKWSL---YEELFRLISEAGLKLHVALCFHSNMH-LFGGKGGISLP 192 (531)
T ss_pred HHHHHHHHHHHHcCCCEEEEEeeeeeeecCCCCcCCcHH---HHHHHHHHHHcCCeEEEEEEecccCC-CCCCccCccCC
Confidence 34567899999999999999999999998 699999995 67789999999999543332244433 222 289
Q ss_pred ccccc----cCCeee
Q 046146 120 VWLHY----IPGSVF 130 (829)
Q Consensus 120 ~WL~~----~p~~~~ 130 (829)
.|+.+ +|+|.+
T Consensus 193 ~WV~~~g~~~pDi~f 207 (531)
T PLN02161 193 LWIREIGDVNKDIYY 207 (531)
T ss_pred HHHHhhhccCCCceE
Confidence 99985 577754
No 26
>PF01373 Glyco_hydro_14: Glycosyl hydrolase family 14; InterPro: IPR001554 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 14 GH14 from CAZY comprises enzymes with only one known activity; beta-amylase (3.2.1.2 from EC). A Glu residue has been proposed as a catalytic residue, but it is not known if it is the nucleophile or the proton donor. Beta-amylase [, ] is an enzyme that hydrolyses 1,4-alpha-glucosidic linkages in starch-type polysaccharide substrates so as to remove successive maltose units from the non-reducing ends of the chains. Beta-amylase is present in certain bacteria as well as in plants. Three highly conserved sequence regions are found in all known beta-amylases. The first of these regions is located in the N-terminal section of the enzymes and contains an aspartate which is known [] to be involved in the catalytic mechanism. The second, located in a more central location, is centred around a glutamate which is also involved [] in the catalytic mechanism. The 3D structure of a complex of soybean beta-amylase with an inhibitor (alpha-cyclodextrin) has been determined to 3.0A resolution by X-ray diffraction []. The enzyme folds into large and small domains: the large domain has a (beta alpha)8 super-secondary structural core, while the smaller is formed from two long loops extending from the beta-3 and beta-4 strands of the (beta alpha)8 fold []. The interface of the two domains, together with shorter loops from the (beta alpha)8 core, form a deep cleft, in which the inhibitor binds []. Two maltose molecules also bind in the cleft, one sharing a binding site with alpha-cyclodextrin, and the other sitting more deeply in the cleft [].; GO: 0016161 beta-amylase activity, 0000272 polysaccharide catabolic process; PDB: 1FA2_A 2DQX_A 1WDP_A 1UKP_C 1BYC_A 1BYA_A 1Q6C_A 1V3I_A 1BTC_A 1BYB_A ....
Probab=97.41 E-value=0.00024 Score=79.98 Aligned_cols=114 Identities=18% Similarity=0.310 Sum_probs=73.3
Q ss_pred cHHHHHHHHHHcCCCEEEEceeCCcccCC-CCeeeeccchhHHHHHHHHHHcCcEEEEecCcccccc----cCCCCCCcc
Q 046146 47 MWPELIQAAKEGGLNTIESYVFWSGHELS-PGKYSFEGRYDLVKFVKTVQQAGMYMLLRIGPFVAAE----YNYGGVPVW 121 (829)
Q Consensus 47 ~W~d~l~k~ka~GlNtV~~yv~Wn~hEp~-~G~~dF~g~~dl~~fl~~a~~~GL~VilrpGPyicaE----w~~GG~P~W 121 (829)
.-+..|+++|++|+..|.+.|.|.+.|.. |++|||+| -.+++++++++||++.+-..=.-|+- .-+=-||.|
T Consensus 17 ~~~~~L~~LK~~GV~GVmvdvWWGiVE~~~p~~ydWs~---Y~~l~~~vr~~GLk~~~vmsfH~cGgNvgD~~~IpLP~W 93 (402)
T PF01373_consen 17 ALEAQLRALKSAGVDGVMVDVWWGIVEGEGPQQYDWSG---YRELFEMVRDAGLKLQVVMSFHQCGGNVGDDCNIPLPSW 93 (402)
T ss_dssp HHHHHHHHHHHTTEEEEEEEEEHHHHTGSSTTB---HH---HHHHHHHHHHTT-EEEEEEE-S-BSSSTTSSSEB-S-HH
T ss_pred HHHHHHHHHHHcCCcEEEEEeEeeeeccCCCCccCcHH---HHHHHHHHHHcCCeEEEEEeeecCCCCCCCccCCcCCHH
Confidence 34678999999999999999999999997 99999995 77889999999999554332233421 111147999
Q ss_pred ccc---cCCeeeecC--------------ChhHHHHHHHHHHHHHHHHhhccccccCCCcEEEecc
Q 046146 122 LHY---IPGSVFRSY--------------SKPFMSYMQKFMTLIVDMMKKEKLFASQGGPIILAQV 170 (829)
Q Consensus 122 L~~---~p~~~~R~~--------------~~~y~~~~~~~~~~l~~~i~~~~l~~~~gGpII~~Qi 170 (829)
+.+ ..+|.+... ... ++.-..|++.+...+++ +. +.|..|||
T Consensus 94 v~~~~~~~di~ytd~~G~rn~E~lSp~~~grt-~~~Y~dfm~sF~~~f~~--~~----~~I~~I~v 152 (402)
T PF01373_consen 94 VWEIGKKDDIFYTDRSGNRNKEYLSPVLDGRT-LQCYSDFMRSFRDNFSD--YL----STITEIQV 152 (402)
T ss_dssp HHHHHHHSGGEEE-TTS-EEEEEE-CTBTTBC-HHHHHHHHHHHHHHCHH--HH----TGEEEEEE
T ss_pred HHhccccCCcEEECCCCCcCcceeecccCCch-HHHHHHHHHHHHHHHHH--HH----hhheEEEe
Confidence 974 235532111 122 56666677777777763 32 67877776
No 27
>PF13204 DUF4038: Protein of unknown function (DUF4038); PDB: 3KZS_D.
Probab=97.24 E-value=0.00092 Score=73.19 Aligned_cols=149 Identities=18% Similarity=0.324 Sum_probs=87.2
Q ss_pred CCcEE-ECCEEeEEEEEEeeC---CCCCcccHHHHHHHHHHcCCCEEEEcee--CCcc--------cC----CCCeeeec
Q 046146 21 HRSLI-IHGRRKLFLSASIHY---PRSVPAMWPELIQAAKEGGLNTIESYVF--WSGH--------EL----SPGKYSFE 82 (829)
Q Consensus 21 ~~~~~-idGkp~~~~sG~~Hy---~R~~~~~W~d~l~k~ka~GlNtV~~yv~--Wn~h--------Ep----~~G~~dF~ 82 (829)
++.|. -||+||++++ .-.+ .|...+.|+.-|+..|+.|||+|++=|+ |..+ .| .++.+||+
T Consensus 2 ~r~f~~~dG~Pff~lg-dT~W~~~~~~~~~e~~~yL~~r~~qgFN~iq~~~l~~~~~~~~~n~~~~~~~~~~~~~~~d~~ 80 (289)
T PF13204_consen 2 GRHFVYADGTPFFWLG-DTAWSLFHRLTREEWEQYLDTRKEQGFNVIQMNVLPQWDGYNTPNRYGFAPFPDEDPGQFDFT 80 (289)
T ss_dssp SSSEEETTS-B--EEE-EE-TTHHHH--HHHHHHHHHHHHHTT--EEEEES-SSSS-B----TTS-BS-SSTT------T
T ss_pred CceEecCCCCEEeehh-HHHHHHhhCCCHHHHHHHHHHHHHCCCCEEEEEeCCCcccccccccCCCcCCCCCCccccCCC
Confidence 45566 7999999998 5554 3568899999999999999999999876 4322 12 12337777
Q ss_pred cc-----hhHHHHHHHHHHcCcEEEEec---CcccccccCCCCCCccccccCCeeeecCChhHHHHHHHHHHHHHHHHhh
Q 046146 83 GR-----YDLVKFVKTVQQAGMYMLLRI---GPFVAAEYNYGGVPVWLHYIPGSVFRSYSKPFMSYMQKFMTLIVDMMKK 154 (829)
Q Consensus 83 g~-----~dl~~fl~~a~~~GL~Vilrp---GPyicaEw~~GG~P~WL~~~p~~~~R~~~~~y~~~~~~~~~~l~~~i~~ 154 (829)
.. ..|++.|+.|.+.||.+-|-| +||.-.-|-.| | ..| =.+.+++|++.|+.+++.
T Consensus 81 ~~N~~YF~~~d~~i~~a~~~Gi~~~lv~~wg~~~~~~~Wg~~--~------~~m--------~~e~~~~Y~~yv~~Ry~~ 144 (289)
T PF13204_consen 81 RPNPAYFDHLDRRIEKANELGIEAALVPFWGCPYVPGTWGFG--P------NIM--------PPENAERYGRYVVARYGA 144 (289)
T ss_dssp T----HHHHHHHHHHHHHHTT-EEEEESS-HHHHH---------T------TSS---------HHHHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHHHHHHCCCeEEEEEEECCcccccccccc--c------cCC--------CHHHHHHHHHHHHHHHhc
Confidence 54 489999999999999965433 34443444333 1 111 147789999999999985
Q ss_pred ccccccCCCcEEEeccccccccchhhccCcHHHHHHHHHHHHhC
Q 046146 155 EKLFASQGGPIILAQVENEYQWYEQFYKGGKEYAMWAASMAVSQ 198 (829)
Q Consensus 155 ~~l~~~~gGpII~~QiENEyg~~~~~y~~~~~y~~~l~~~~~~~ 198 (829)
.+ +|| +=|-||+ .. .....++.+.+.+.+++.
T Consensus 145 ~~-------Nvi-W~l~gd~-~~---~~~~~~~w~~~~~~i~~~ 176 (289)
T PF13204_consen 145 YP-------NVI-WILGGDY-FD---TEKTRADWDAMARGIKEN 176 (289)
T ss_dssp -S-------SEE-EEEESSS------TTSSHHHHHHHHHHHHHH
T ss_pred CC-------CCE-EEecCcc-CC---CCcCHHHHHHHHHHHHhh
Confidence 42 455 4488888 11 126777888888877764
No 28
>COG3693 XynA Beta-1,4-xylanase [Carbohydrate transport and metabolism]
Probab=96.96 E-value=0.0035 Score=68.41 Aligned_cols=131 Identities=20% Similarity=0.252 Sum_probs=96.7
Q ss_pred HHHcCCCEEEEceeCCcccCCCCeeeeccchhHHHHHHHHHHcCcEEEEecCcccccccCCCCCCccccccCCeeeecCC
Q 046146 55 AKEGGLNTIESYVFWSGHELSPGKYSFEGRYDLVKFVKTVQQAGMYMLLRIGPFVAAEYNYGGVPVWLHYIPGSVFRSYS 134 (829)
Q Consensus 55 ~ka~GlNtV~~yv~Wn~hEp~~G~~dF~g~~dl~~fl~~a~~~GL~VilrpGPyicaEw~~GG~P~WL~~~p~~~~R~~~ 134 (829)
.|+.+.=|-+.=.=|+..||++|.|+|+ --++..+.|+++||. ||-=+.| |-+ -.|.|+..+. -+-
T Consensus 55 ~re~n~iTpenemKwe~i~p~~G~f~Fe---~AD~ia~FAr~h~m~--lhGHtLv---W~~-q~P~W~~~~e-----~~~ 120 (345)
T COG3693 55 ARECNQITPENEMKWEAIEPERGRFNFE---AADAIANFARKHNMP--LHGHTLV---WHS-QVPDWLFGDE-----LSK 120 (345)
T ss_pred HhhhcccccccccccccccCCCCccCcc---chHHHHHHHHHcCCe--eccceee---ecc-cCCchhhccc-----cCh
Confidence 4444544445555699999999999999 688999999999995 3433333 433 6899998643 244
Q ss_pred hhHHHHHHHHHHHHHHHHhhccccccCCCcEEEecccccccc----chhh---c-cCcHHHHHHHHHHHHhCCCccceee
Q 046146 135 KPFMSYMQKFMTLIVDMMKKEKLFASQGGPIILAQVENEYQW----YEQF---Y-KGGKEYAMWAASMAVSQNTGVPWIM 206 (829)
Q Consensus 135 ~~y~~~~~~~~~~l~~~i~~~~l~~~~gGpII~~QiENEyg~----~~~~---y-~~~~~y~~~l~~~~~~~g~~vp~~~ 206 (829)
+..++.+++++..++.+++ |-|+.|-|=||--. +..+ + +.+.+|+++.-+.+|+++-+--++.
T Consensus 121 ~~~~~~~e~hI~tV~~rYk---------g~~~sWDVVNE~vdd~g~~R~s~w~~~~~gpd~I~~aF~~AreadP~AkL~~ 191 (345)
T COG3693 121 EALAKMVEEHIKTVVGRYK---------GSVASWDVVNEAVDDQGSLRRSAWYDGGTGPDYIKLAFHIAREADPDAKLVI 191 (345)
T ss_pred HHHHHHHHHHHHHHHHhcc---------CceeEEEecccccCCCchhhhhhhhccCCccHHHHHHHHHHHhhCCCceEEe
Confidence 6789999999999999987 45999999999632 2222 2 1578999999999998776665665
Q ss_pred ec
Q 046146 207 CQ 208 (829)
Q Consensus 207 ~~ 208 (829)
++
T Consensus 192 ND 193 (345)
T COG3693 192 ND 193 (345)
T ss_pred ec
Confidence 44
No 29
>PF00232 Glyco_hydro_1: Glycosyl hydrolase family 1; InterPro: IPR001360 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 1 GH1 from CAZY comprises enzymes with a number of known activities; beta-glucosidase (3.2.1.21 from EC); beta-galactosidase (3.2.1.23 from EC); 6-phospho-beta-galactosidase (3.2.1.85 from EC); 6-phospho-beta-glucosidase (3.2.1.86 from EC); lactase-phlorizin hydrolase (3.2.1.62 from EC), (3.2.1.108 from EC); beta-mannosidase (3.2.1.25 from EC); myrosinase (3.2.1.147 from EC). ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1QVB_A 3AHY_D 2E9L_A 2ZOX_A 2JFE_X 2E9M_A 3FIZ_A 3FIY_A 3CMJ_A 3FJ0_A ....
Probab=96.71 E-value=0.0018 Score=75.31 Aligned_cols=97 Identities=18% Similarity=0.294 Sum_probs=73.9
Q ss_pred ccHHHHHHHHHHcCCCEEEEceeCCcccCC--CCeeeeccchhHHHHHHHHHHcCcEEEEecCcccccccCCCCCCcccc
Q 046146 46 AMWPELIQAAKEGGLNTIESYVFWSGHELS--PGKYSFEGRYDLVKFVKTVQQAGMYMLLRIGPFVAAEYNYGGVPVWLH 123 (829)
Q Consensus 46 ~~W~d~l~k~ka~GlNtV~~yv~Wn~hEp~--~G~~dF~g~~dl~~fl~~a~~~GL~VilrpGPyicaEw~~GG~P~WL~ 123 (829)
..|+++|+.||++|+|+.++-+.|...+|. +|++|-.|..--+++|+.+.++||..++-- -.-.+|.||.
T Consensus 58 ~~y~eDi~l~~~lg~~~yRfsi~W~Ri~P~g~~g~~n~~~~~~Y~~~i~~l~~~gi~P~vtL--------~H~~~P~~l~ 129 (455)
T PF00232_consen 58 HRYKEDIALMKELGVNAYRFSISWSRIFPDGFEGKVNEEGLDFYRDLIDELLENGIEPIVTL--------YHFDLPLWLE 129 (455)
T ss_dssp HHHHHHHHHHHHHT-SEEEEE--HHHHSTTSSSSSS-HHHHHHHHHHHHHHHHTT-EEEEEE--------ESS--BHHHH
T ss_pred hhhhHHHHHHHhhccceeeeecchhheeecccccccCHhHhhhhHHHHHHHHhhccceeeee--------eeccccccee
Confidence 358999999999999999999999999999 699999999999999999999999976654 3567999998
Q ss_pred ccCCeeeecCChhHHHHHHHHHHHHHHHHhh
Q 046146 124 YIPGSVFRSYSKPFMSYMQKFMTLIVDMMKK 154 (829)
Q Consensus 124 ~~p~~~~R~~~~~y~~~~~~~~~~l~~~i~~ 154 (829)
+.-+- .++...+.-.+|.+.+++++.+
T Consensus 130 ~~ggw----~~~~~~~~F~~Ya~~~~~~~gd 156 (455)
T PF00232_consen 130 DYGGW----LNRETVDWFARYAEFVFERFGD 156 (455)
T ss_dssp HHTGG----GSTHHHHHHHHHHHHHHHHHTT
T ss_pred ecccc----cCHHHHHHHHHHHHHHHHHhCC
Confidence 75443 2456667777777777777763
No 30
>PF02837 Glyco_hydro_2_N: Glycosyl hydrolases family 2, sugar binding domain; InterPro: IPR006104 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 2 GH2 from CAZY comprises enzymes with several known activities; beta-galactosidase (3.2.1.23 from EC); beta-mannosidase (3.2.1.25 from EC); beta-glucuronidase (3.2.1.31 from EC). These enzymes contain a conserved glutamic acid residue which has been shown [], in Escherichia coli lacZ (P00722 from SWISSPROT), to be the general acid/base catalyst in the active site of the enzyme. This domain has a jelly-roll fold [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3DEC_A 3OB8_A 3OBA_A 3CMG_A 3FN9_C 2VZU_A 2X09_A 2VZO_A 2X05_A 2VZV_B ....
Probab=96.66 E-value=0.0031 Score=62.68 Aligned_cols=67 Identities=18% Similarity=0.311 Sum_probs=50.3
Q ss_pred CCCceEEEEEEECCCCC--CCeEEeeCCC-ccEEEEEcCeecceeeccCCCCCCCcccccccCCCcccccccCCCCCccc
Q 046146 613 NQPLTWYKAVVNEPVGD--EPIGLDMLHM-GKGQAWLNGEPIGRYWDKRSSIDDHCVQECDYRGTFNQQKCLTGSGEPTQ 689 (829)
Q Consensus 613 ~~~~~wYk~~F~~p~~~--d~~~Ld~~g~-gKG~vwVNG~nlGRYW~~~~~~~~g~~~~c~~~g~~~~~~~~~~~~gPqq 689 (829)
..+..|||++|++|... ..++|.+.|. ....|||||+-||+.... -.-
T Consensus 66 ~~~~~wYr~~f~lp~~~~~~~~~L~f~gv~~~a~v~vNG~~vg~~~~~-----------------------------~~~ 116 (167)
T PF02837_consen 66 YSGYAWYRRTFTLPADWKGKRVFLRFEGVDYAAEVYVNGKLVGSHEGG-----------------------------YTP 116 (167)
T ss_dssp CCSEEEEEEEEEESGGGTTSEEEEEESEEESEEEEEETTEEEEEEEST-----------------------------TS-
T ss_pred cCceEEEEEEEEeCchhcCceEEEEeccceEeeEEEeCCeEEeeeCCC-----------------------------cCC
Confidence 35679999999999642 4689999987 589999999999997632 112
Q ss_pred ceeecCcccccccc-cEEEEE
Q 046146 690 RWYHVPRSWFKPSG-NILVIF 709 (829)
Q Consensus 690 tlYhVP~~~Lk~g~-N~lvvf 709 (829)
.-+-|+. .|++|. |+|.|.
T Consensus 117 ~~~dIt~-~l~~g~~N~l~V~ 136 (167)
T PF02837_consen 117 FEFDITD-YLKPGEENTLAVR 136 (167)
T ss_dssp EEEECGG-GSSSEEEEEEEEE
T ss_pred eEEeChh-hccCCCCEEEEEE
Confidence 2355764 788888 988763
No 31
>PF00331 Glyco_hydro_10: Glycosyl hydrolase family 10; InterPro: IPR001000 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 10 GH10 from CAZY comprises enzymes with a number of known activities; xylanase (3.2.1.8 from EC); endo-1,3-beta-xylanase (3.2.1.32 from EC); cellobiohydrolase (3.2.1.91 from EC). These enzymes were formerly known as cellulase family F. The microbial degradation of cellulose and xylans requires several types of enzymes such as endoglucanases (3.2.1.4 from EC), cellobiohydrolases (3.2.1.91 from EC) (exoglucanases), or xylanases (3.2.1.8 from EC) [, ]. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family F [] or as the glycosyl hydrolases family 10 []. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1UQZ_A 1UQY_A 1UR2_A 1UR1_A 2CNC_A 1OD8_A 1E0W_A 1E0V_A 1V0M_A 1E0X_B ....
Probab=96.49 E-value=0.0044 Score=68.86 Aligned_cols=156 Identities=15% Similarity=0.220 Sum_probs=105.2
Q ss_pred EEEEEeeCCCCCcccHHHHHHHHHHcCCCEEEEc--eeCCcccCCCCeeeeccchhHHHHHHHHHHcCcEEEEecCcccc
Q 046146 33 FLSASIHYPRSVPAMWPELIQAAKEGGLNTIESY--VFWSGHELSPGKYSFEGRYDLVKFVKTVQQAGMYMLLRIGPFVA 110 (829)
Q Consensus 33 ~~sG~~Hy~R~~~~~W~d~l~k~ka~GlNtV~~y--v~Wn~hEp~~G~~dF~g~~dl~~fl~~a~~~GL~VilrpGPyic 110 (829)
.++.+++..++..+. ..+.+-..-||.|..- .-|...||.+|+|||+ ..+++++.|+++||.|--.+ -
T Consensus 11 ~~G~av~~~~~~~~~---~~~~~~~~~Fn~~t~eN~~Kw~~~e~~~g~~~~~---~~D~~~~~a~~~g~~vrGH~--L-- 80 (320)
T PF00331_consen 11 PFGAAVNAQQLEDDP---RYRELFAKHFNSVTPENEMKWGSIEPEPGRFNFE---SADAILDWARENGIKVRGHT--L-- 80 (320)
T ss_dssp EEEEEEBGGGHTHHH---HHHHHHHHH-SEEEESSTTSHHHHESBTTBEE-H---HHHHHHHHHHHTT-EEEEEE--E--
T ss_pred CEEEEechhHcCCcH---HHHHHHHHhCCeeeeccccchhhhcCCCCccCcc---chhHHHHHHHhcCcceeeee--E--
Confidence 688899987765442 3444445578888765 5699999999999999 89999999999999865332 1
Q ss_pred cccCCCCCCccccccCCeeeecC-ChhHHHHHHHHHHHHHHHHhhccccccCCCcEEEeccccccccchh---------h
Q 046146 111 AEYNYGGVPVWLHYIPGSVFRSY-SKPFMSYMQKFMTLIVDMMKKEKLFASQGGPIILAQVENEYQWYEQ---------F 180 (829)
Q Consensus 111 aEw~~GG~P~WL~~~p~~~~R~~-~~~y~~~~~~~~~~l~~~i~~~~l~~~~gGpII~~QiENEyg~~~~---------~ 180 (829)
=|.. ..|.|+...+.. ... .+..+++++++++.++.++++ -|.|.+|-|=||-=.... .
T Consensus 81 -vW~~-~~P~w~~~~~~~--~~~~~~~~~~~l~~~I~~v~~~y~~-------~g~i~~WDVvNE~i~~~~~~~~~r~~~~ 149 (320)
T PF00331_consen 81 -VWHS-QTPDWVFNLANG--SPDEKEELRARLENHIKTVVTRYKD-------KGRIYAWDVVNEAIDDDGNPGGLRDSPW 149 (320)
T ss_dssp -EESS-SS-HHHHTSTTS--SBHHHHHHHHHHHHHHHHHHHHTTT-------TTTESEEEEEES-B-TTSSSSSBCTSHH
T ss_pred -EEcc-cccceeeeccCC--CcccHHHHHHHHHHHHHHHHhHhcc-------ccceEEEEEeeecccCCCccccccCChh
Confidence 1433 789999975111 000 124788899999999888862 189999999999632110 0
Q ss_pred cc-CcHHHHHHHHHHHHhCCCccceeeecc
Q 046146 181 YK-GGKEYAMWAASMAVSQNTGVPWIMCQQ 209 (829)
Q Consensus 181 y~-~~~~y~~~l~~~~~~~g~~vp~~~~~~ 209 (829)
|. -+.+|+...-+++++..-++.|+.++-
T Consensus 150 ~~~lG~~yi~~aF~~A~~~~P~a~L~~NDy 179 (320)
T PF00331_consen 150 YDALGPDYIADAFRAAREADPNAKLFYNDY 179 (320)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTTSEEEEEES
T ss_pred hhcccHhHHHHHHHHHHHhCCCcEEEeccc
Confidence 11 235788888888888777777776553
No 32
>COG2730 BglC Endoglucanase [Carbohydrate transport and metabolism]
Probab=96.07 E-value=0.019 Score=65.92 Aligned_cols=117 Identities=14% Similarity=0.152 Sum_probs=70.6
Q ss_pred CcccH-----HHHHHHHHHcCCCEEEEceeCCcccCC----CCeeeeccchhHHHHHHHHHHcCcEEEEecCcccccccC
Q 046146 44 VPAMW-----PELIQAAKEGGLNTIESYVFWSGHELS----PGKYSFEGRYDLVKFVKTVQQAGMYMLLRIGPFVAAEYN 114 (829)
Q Consensus 44 ~~~~W-----~d~l~k~ka~GlNtV~~yv~Wn~hEp~----~G~~dF~g~~dl~~fl~~a~~~GL~VilrpGPyicaEw~ 114 (829)
....| ++.+..||.+|||+|++++.|..+++. |...+=+--..|++.|+.|++.||+|+|-.-=|-+ -.
T Consensus 66 ~~~~w~~~~~~~~~~~ik~~G~n~VRiPi~~~~~~~~~~~~p~~~~~~~~~~ld~~I~~a~~~gi~V~iD~H~~~~--~~ 143 (407)
T COG2730 66 LESHWGNFITEEDFDQIKSAGFNAVRIPIGYWALQATDGDNPYLIGLTQLKILDEAINWAKKLGIYVLIDLHGYPG--GN 143 (407)
T ss_pred chhccchhhhhhHHHHHHHcCCcEEEcccchhhhhccCCCCCCeecchHHHHHHHHHHHHHhcCeeEEEEecccCC--CC
Confidence 45668 899999999999999999994443554 33332222237899999999999999998421100 00
Q ss_pred CCCCCccccc-cCCeeeecCChhHHHHHHHHHHHHHHHHhhccccccCCCcEEEeccccccc
Q 046146 115 YGGVPVWLHY-IPGSVFRSYSKPFMSYMQKFMTLIVDMMKKEKLFASQGGPIILAQVENEYQ 175 (829)
Q Consensus 115 ~GG~P~WL~~-~p~~~~R~~~~~y~~~~~~~~~~l~~~i~~~~l~~~~gGpII~~QiENEyg 175 (829)
.+-=..|... ... ....+++..+-...|+.+. ++.-.||++|+=||.-
T Consensus 144 ~~~~~s~~~~~~~~------~~~~~~~~~~~w~~ia~~f-------~~~~~VIg~~~~NEP~ 192 (407)
T COG2730 144 NGHEHSGYTSDYKE------ENENVEATIDIWKFIANRF-------KNYDTVIGFELINEPN 192 (407)
T ss_pred CCcCcccccccccc------cchhHHHHHHHHHHHHHhc-------cCCCceeeeeeecCCc
Confidence 0111223222 111 1222333333334444444 4456899999999976
No 33
>PRK09852 cryptic 6-phospho-beta-glucosidase; Provisional
Probab=96.06 E-value=0.0067 Score=70.90 Aligned_cols=96 Identities=13% Similarity=0.137 Sum_probs=73.2
Q ss_pred ccHHHHHHHHHHcCCCEEEEceeCCcccCC--CCeeeeccchhHHHHHHHHHHcCcEEEEecCcccccccCCCCCCcccc
Q 046146 46 AMWPELIQAAKEGGLNTIESYVFWSGHELS--PGKYSFEGRYDLVKFVKTVQQAGMYMLLRIGPFVAAEYNYGGVPVWLH 123 (829)
Q Consensus 46 ~~W~d~l~k~ka~GlNtV~~yv~Wn~hEp~--~G~~dF~g~~dl~~fl~~a~~~GL~VilrpGPyicaEw~~GG~P~WL~ 123 (829)
..|+++++.||++|+|+.++-+.|...+|. ++++|=+|..-.+++|+.+.++||..++-- ..=.+|.||.
T Consensus 71 hry~eDi~l~~~lG~~~yR~si~WsRi~P~g~~~~~n~~~~~~Y~~~i~~l~~~gi~p~VtL--------~H~~~P~~l~ 142 (474)
T PRK09852 71 HRYKEDIALMAEMGFKVFRTSIAWSRLFPQGDELTPNQQGIAFYRSVFEECKKYGIEPLVTL--------CHFDVPMHLV 142 (474)
T ss_pred hhhHHHHHHHHHcCCCeEEeeceeeeeeeCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEe--------eCCCCCHHHH
Confidence 347999999999999999999999999997 556787888899999999999999977654 3446899997
Q ss_pred cc-CCeeeecCChhHHHHHHHHHHHHHHHHh
Q 046146 124 YI-PGSVFRSYSKPFMSYMQKFMTLIVDMMK 153 (829)
Q Consensus 124 ~~-p~~~~R~~~~~y~~~~~~~~~~l~~~i~ 153 (829)
.. -+- .++...++..+|.+.+++++.
T Consensus 143 ~~~GGW----~~~~~~~~F~~ya~~~~~~fg 169 (474)
T PRK09852 143 TEYGSW----RNRKMVEFFSRYARTCFEAFD 169 (474)
T ss_pred HhcCCC----CCHHHHHHHHHHHHHHHHHhc
Confidence 63 443 234444555555555555554
No 34
>PRK15014 6-phospho-beta-glucosidase BglA; Provisional
Probab=96.04 E-value=0.0076 Score=70.52 Aligned_cols=96 Identities=11% Similarity=0.159 Sum_probs=75.8
Q ss_pred ccHHHHHHHHHHcCCCEEEEceeCCcccCC--CCeeeeccchhHHHHHHHHHHcCcEEEEecCcccccccCCCCCCcccc
Q 046146 46 AMWPELIQAAKEGGLNTIESYVFWSGHELS--PGKYSFEGRYDLVKFVKTVQQAGMYMLLRIGPFVAAEYNYGGVPVWLH 123 (829)
Q Consensus 46 ~~W~d~l~k~ka~GlNtV~~yv~Wn~hEp~--~G~~dF~g~~dl~~fl~~a~~~GL~VilrpGPyicaEw~~GG~P~WL~ 123 (829)
..|+++++.||++|+|+-++-|.|....|. +|++|=.|..-.+++|+.+.++||..++-- -.=.+|.||.
T Consensus 69 hry~EDI~Lm~elG~~~yRfSIsWsRI~P~G~~~~~N~~gl~~Y~~lid~l~~~GI~P~vTL--------~H~dlP~~L~ 140 (477)
T PRK15014 69 GHYKEDIKLFAEMGFKCFRTSIAWTRIFPKGDEAQPNEEGLKFYDDMFDELLKYNIEPVITL--------SHFEMPLHLV 140 (477)
T ss_pred cccHHHHHHHHHcCCCEEEecccceeeccCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEe--------eCCCCCHHHH
Confidence 358999999999999999999999999997 567888888899999999999999977654 2446899997
Q ss_pred cc-CCeeeecCChhHHHHHHHHHHHHHHHHh
Q 046146 124 YI-PGSVFRSYSKPFMSYMQKFMTLIVDMMK 153 (829)
Q Consensus 124 ~~-p~~~~R~~~~~y~~~~~~~~~~l~~~i~ 153 (829)
.. -+- .++...++-.+|.+.+++++.
T Consensus 141 ~~yGGW----~n~~~~~~F~~Ya~~~f~~fg 167 (477)
T PRK15014 141 QQYGSW----TNRKVVDFFVRFAEVVFERYK 167 (477)
T ss_pred HhcCCC----CChHHHHHHHHHHHHHHHHhc
Confidence 64 443 345555566666666666665
No 35
>PF14488 DUF4434: Domain of unknown function (DUF4434)
Probab=95.97 E-value=0.076 Score=53.64 Aligned_cols=64 Identities=25% Similarity=0.388 Sum_probs=47.0
Q ss_pred CCCCcccHHHHHHHHHHcCCCEEEEceeCCcccC-----C---CCeeeeccchhHHHHHHHHHHcCcEEEEecC
Q 046146 41 PRSVPAMWPELIQAAKEGGLNTIESYVFWSGHEL-----S---PGKYSFEGRYDLVKFVKTVQQAGMYMLLRIG 106 (829)
Q Consensus 41 ~R~~~~~W~d~l~k~ka~GlNtV~~yv~Wn~hEp-----~---~G~~dF~g~~dl~~fl~~a~~~GL~VilrpG 106 (829)
-.++++.|+..|+.||++|+|||=+- |...+- . ++.|.-....-|+.+|++|++.||+|++..+
T Consensus 15 ~~~~~~~W~~~~~~m~~~GidtlIlq--~~~~~~~~~yps~~~~~~~~~~~~d~l~~~L~~A~~~Gmkv~~Gl~ 86 (166)
T PF14488_consen 15 QNWTPAQWREEFRAMKAIGIDTLILQ--WTGYGGFAFYPSKLSPGGFYMPPVDLLEMILDAADKYGMKVFVGLY 86 (166)
T ss_pred cCCCHHHHHHHHHHHHHcCCcEEEEE--EeecCCcccCCccccCccccCCcccHHHHHHHHHHHcCCEEEEeCC
Confidence 46899999999999999999998432 322221 1 2223333445899999999999999998763
No 36
>PF07745 Glyco_hydro_53: Glycosyl hydrolase family 53; InterPro: IPR011683 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain is found in family 53 of the glycosyl hydrolase classification []. These enzymes are endo-1,4- beta-galactanases (3.2.1.89 from EC). The structure of this domain is known [] and has a TIM barrel fold.; GO: 0015926 glucosidase activity; PDB: 1HJQ_A 1HJS_A 1HJU_B 1FHL_A 1FOB_A 2GFT_A 1UR4_B 1UR0_A 1R8L_B 2CCR_A ....
Probab=95.90 E-value=0.023 Score=63.43 Aligned_cols=103 Identities=24% Similarity=0.391 Sum_probs=66.8
Q ss_pred HHHHHHHHHcCCCEEEEceeCCcccCCC-CeeeeccchhHHHHHHHHHHcCcEEEEecCcccccccCCCCCCccccccCC
Q 046146 49 PELIQAAKEGGLNTIESYVFWSGHELSP-GKYSFEGRYDLVKFVKTVQQAGMYMLLRIGPFVAAEYNYGGVPVWLHYIPG 127 (829)
Q Consensus 49 ~d~l~k~ka~GlNtV~~yv~Wn~hEp~~-G~~dF~g~~dl~~fl~~a~~~GL~VilrpGPyicaEw~~GG~P~WL~~~p~ 127 (829)
+|.|+-+|+.|+|+|+.=| |+- |.. |..|.+ +..+..+-|+++||.|+|-+- |- -.|- +|+
T Consensus 27 ~d~~~ilk~~G~N~vRlRv-wv~--P~~~g~~~~~---~~~~~akrak~~Gm~vlldfH-YS---------D~Wa--DPg 88 (332)
T PF07745_consen 27 KDLFQILKDHGVNAVRLRV-WVN--PYDGGYNDLE---DVIALAKRAKAAGMKVLLDFH-YS---------DFWA--DPG 88 (332)
T ss_dssp --HHHHHHHTT--EEEEEE--SS---TTTTTTSHH---HHHHHHHHHHHTT-EEEEEE--SS---------SS----BTT
T ss_pred CCHHHHHHhcCCCeEEEEe-ccC--CcccccCCHH---HHHHHHHHHHHCCCeEEEeec-cc---------CCCC--CCC
Confidence 6899999999999999998 554 444 655555 666777777889999999873 32 1232 233
Q ss_pred eee-----e-cCChhHHHHHHHHHHHHHHHHhhccccccCCCcEEEeccccccc
Q 046146 128 SVF-----R-SYSKPFMSYMQKFMTLIVDMMKKEKLFASQGGPIILAQVENEYQ 175 (829)
Q Consensus 128 ~~~-----R-~~~~~y~~~~~~~~~~l~~~i~~~~l~~~~gGpII~~QiENEyg 175 (829)
-+. + -+-..-.+++..|...++..|+. +|=.+=||||-||..
T Consensus 89 ~Q~~P~aW~~~~~~~l~~~v~~yT~~vl~~l~~------~G~~pd~VQVGNEin 136 (332)
T PF07745_consen 89 KQNKPAAWANLSFDQLAKAVYDYTKDVLQALKA------AGVTPDMVQVGNEIN 136 (332)
T ss_dssp B-B--TTCTSSSHHHHHHHHHHHHHHHHHHHHH------TT--ESEEEESSSGG
T ss_pred CCCCCccCCCCCHHHHHHHHHHHHHHHHHHHHH------CCCCccEEEeCcccc
Confidence 221 1 13355678999999999999984 456788999999975
No 37
>PRK10150 beta-D-glucuronidase; Provisional
Probab=95.68 E-value=0.052 Score=65.44 Aligned_cols=75 Identities=19% Similarity=0.228 Sum_probs=55.1
Q ss_pred CCccEEEEEEEecCCCchhhhccCCCceEEecCcceEEEEEEcCEEEEEEEeccCCceeeEEEeeeecCCCc-cEEEEEE
Q 046146 463 DTTDYLWYTTSIIFSEDEEFLRTGSQPVLLIESKGHTLHAFINQELVQGNSTYSTGTLVFSFTALIPLKAGK-NKIDLLS 541 (829)
Q Consensus 463 d~~Gyl~Y~T~v~~~~~~~~~~~~~~~~L~i~~~~D~~~vfvng~~v~G~~~~~~~~~~~~~~~~~~l~~g~-~~L~ILv 541 (829)
+..|..|||++|.++.. +.++...|.+.++...+.|||||+.| |...+.. ..+.+++.-.|+.|. |+|.|.|
T Consensus 62 ~~~G~~WYrr~f~lp~~----~~gk~v~L~Fegv~~~a~V~lNG~~v-g~~~~~~--~~f~~DIT~~l~~G~~n~L~V~v 134 (604)
T PRK10150 62 NYVGDVWYQREVFIPKG----WAGQRIVLRFGSVTHYAKVWVNGQEV-MEHKGGY--TPFEADITPYVYAGKSVRITVCV 134 (604)
T ss_pred CCcccEEEEEEEECCcc----cCCCEEEEEECcccceEEEEECCEEe-eeEcCCc--cceEEeCchhccCCCceEEEEEE
Confidence 35788999999987642 12356789999999999999999999 9876432 235555444466664 4999999
Q ss_pred ecC
Q 046146 542 MTV 544 (829)
Q Consensus 542 en~ 544 (829)
.|.
T Consensus 135 ~n~ 137 (604)
T PRK10150 135 NNE 137 (604)
T ss_pred ecC
Confidence 764
No 38
>PRK09593 arb 6-phospho-beta-glucosidase; Reviewed
Probab=95.61 E-value=0.016 Score=67.86 Aligned_cols=100 Identities=17% Similarity=0.095 Sum_probs=74.3
Q ss_pred ccHHHHHHHHHHcCCCEEEEceeCCcccCC--CCeeeeccchhHHHHHHHHHHcCcEEEEecCcccccccCCCCCCcccc
Q 046146 46 AMWPELIQAAKEGGLNTIESYVFWSGHELS--PGKYSFEGRYDLVKFVKTVQQAGMYMLLRIGPFVAAEYNYGGVPVWLH 123 (829)
Q Consensus 46 ~~W~d~l~k~ka~GlNtV~~yv~Wn~hEp~--~G~~dF~g~~dl~~fl~~a~~~GL~VilrpGPyicaEw~~GG~P~WL~ 123 (829)
..|+++++.||++|+|+-++-|-|+..+|. +|++|=.|..--+++|+.+.++||..++-- -.=.+|.||.
T Consensus 73 hry~eDi~Lm~~lG~~aYRfSIsWsRI~P~G~~~~~N~~gl~~Y~~lId~L~~~GI~P~VTL--------~H~dlP~~L~ 144 (478)
T PRK09593 73 HHYKEDIALFAEMGFKTYRMSIAWTRIFPKGDELEPNEAGLQFYEDIFKECHKYGIEPLVTI--------THFDCPMHLI 144 (478)
T ss_pred HhhHHHHHHHHHcCCCEEEEecchhhcccCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEe--------cccCCCHHHH
Confidence 458999999999999999999999999997 667788888899999999999999866543 1335899998
Q ss_pred cc-CCeeeecCChhHHHHHHHHHHHHHHHHh
Q 046146 124 YI-PGSVFRSYSKPFMSYMQKFMTLIVDMMK 153 (829)
Q Consensus 124 ~~-p~~~~R~~~~~y~~~~~~~~~~l~~~i~ 153 (829)
+. -|-.=|..=..|.++++.-++++..+++
T Consensus 145 ~~~GGW~n~~~v~~F~~YA~~~~~~fgdrVk 175 (478)
T PRK09593 145 EEYGGWRNRKMVGFYERLCRTLFTRYKGLVK 175 (478)
T ss_pred hhcCCCCChHHHHHHHHHHHHHHHHhcCcCC
Confidence 64 5532222223455555555555555554
No 39
>PLN02998 beta-glucosidase
Probab=95.60 E-value=0.013 Score=68.82 Aligned_cols=100 Identities=15% Similarity=0.167 Sum_probs=75.0
Q ss_pred ccHHHHHHHHHHcCCCEEEEceeCCcccCC-CCeeeeccchhHHHHHHHHHHcCcEEEEecCcccccccCCCCCCccccc
Q 046146 46 AMWPELIQAAKEGGLNTIESYVFWSGHELS-PGKYSFEGRYDLVKFVKTVQQAGMYMLLRIGPFVAAEYNYGGVPVWLHY 124 (829)
Q Consensus 46 ~~W~d~l~k~ka~GlNtV~~yv~Wn~hEp~-~G~~dF~g~~dl~~fl~~a~~~GL~VilrpGPyicaEw~~GG~P~WL~~ 124 (829)
..|+++++.||++|+|+-++-|-|+..+|. .|.+|=+|..--+++|+.+.++||..++-- -.=.+|.||.+
T Consensus 82 hry~EDi~lmk~lG~~~YRfSIsWsRI~P~G~g~vN~~gl~~Y~~lid~L~~~GIeP~VTL--------~H~dlP~~L~~ 153 (497)
T PLN02998 82 HKYKEDVKLMADMGLEAYRFSISWSRLLPSGRGPINPKGLQYYNNLIDELITHGIQPHVTL--------HHFDLPQALED 153 (497)
T ss_pred HhhHHHHHHHHHcCCCeEEeeccHHhcCcCCCCCcCHHHHHHHHHHHHHHHHcCCceEEEe--------cCCCCCHHHHH
Confidence 358999999999999999999999999997 677888899999999999999999866543 13347999986
Q ss_pred c-CCeeeecCChhHHHHHHHHHHHHHHHHh
Q 046146 125 I-PGSVFRSYSKPFMSYMQKFMTLIVDMMK 153 (829)
Q Consensus 125 ~-p~~~~R~~~~~y~~~~~~~~~~l~~~i~ 153 (829)
. -|-.=|..=..|.++++.-++++..+++
T Consensus 154 ~yGGW~n~~~v~~F~~YA~~~~~~fgdrVk 183 (497)
T PLN02998 154 EYGGWLSQEIVRDFTAYADTCFKEFGDRVS 183 (497)
T ss_pred hhCCcCCchHHHHHHHHHHHHHHHhcCcCC
Confidence 3 5532222224455555555555555554
No 40
>PRK13511 6-phospho-beta-galactosidase; Provisional
Probab=95.55 E-value=0.016 Score=67.77 Aligned_cols=95 Identities=15% Similarity=0.172 Sum_probs=71.7
Q ss_pred ccHHHHHHHHHHcCCCEEEEceeCCcccCC-CCeeeeccchhHHHHHHHHHHcCcEEEEecCcccccccCCCCCCccccc
Q 046146 46 AMWPELIQAAKEGGLNTIESYVFWSGHELS-PGKYSFEGRYDLVKFVKTVQQAGMYMLLRIGPFVAAEYNYGGVPVWLHY 124 (829)
Q Consensus 46 ~~W~d~l~k~ka~GlNtV~~yv~Wn~hEp~-~G~~dF~g~~dl~~fl~~a~~~GL~VilrpGPyicaEw~~GG~P~WL~~ 124 (829)
..|+++++.||++|+|+-++-|.|+-.+|. .|.+|=.|..--+++|+.+.++||.-++-- -.=.+|.||.+
T Consensus 54 ~ry~eDi~L~~~lG~~~yRfSIsWsRI~P~G~g~vN~~gl~~Y~~lid~l~~~GI~P~VTL--------~H~dlP~~L~~ 125 (469)
T PRK13511 54 HRYPEDLKLAEEFGVNGIRISIAWSRIFPDGYGEVNPKGVEYYHRLFAECHKRHVEPFVTL--------HHFDTPEALHS 125 (469)
T ss_pred hhhHHHHHHHHHhCCCEEEeeccHhhcCcCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEe--------cCCCCcHHHHH
Confidence 348999999999999999999999999997 577888899999999999999999866553 23358999987
Q ss_pred cCCeeeecCChhHHHHHHHHHHHHHHHH
Q 046146 125 IPGSVFRSYSKPFMSYMQKFMTLIVDMM 152 (829)
Q Consensus 125 ~p~~~~R~~~~~y~~~~~~~~~~l~~~i 152 (829)
.-+- .++...++-.+|.+.+++++
T Consensus 126 ~GGW----~n~~~v~~F~~YA~~~~~~f 149 (469)
T PRK13511 126 NGDW----LNRENIDHFVRYAEFCFEEF 149 (469)
T ss_pred cCCC----CCHHHHHHHHHHHHHHHHHh
Confidence 5443 23343444444444444444
No 41
>PLN02814 beta-glucosidase
Probab=95.44 E-value=0.016 Score=68.33 Aligned_cols=100 Identities=16% Similarity=0.166 Sum_probs=74.1
Q ss_pred ccHHHHHHHHHHcCCCEEEEceeCCcccCC-CCeeeeccchhHHHHHHHHHHcCcEEEEecCcccccccCCCCCCccccc
Q 046146 46 AMWPELIQAAKEGGLNTIESYVFWSGHELS-PGKYSFEGRYDLVKFVKTVQQAGMYMLLRIGPFVAAEYNYGGVPVWLHY 124 (829)
Q Consensus 46 ~~W~d~l~k~ka~GlNtV~~yv~Wn~hEp~-~G~~dF~g~~dl~~fl~~a~~~GL~VilrpGPyicaEw~~GG~P~WL~~ 124 (829)
..|+++++.||++|+|+-++-|-|+-.+|. +|.+|-+|..--+++|+.+.++||..++--= .=-+|.||.+
T Consensus 77 hry~EDI~L~k~lG~~ayRfSIsWsRI~P~G~g~~N~~Gl~fY~~lId~l~~~GI~P~VTL~--------H~dlP~~L~~ 148 (504)
T PLN02814 77 HKYKEDVKLMAEMGLESFRFSISWSRLIPNGRGLINPKGLLFYKNLIKELRSHGIEPHVTLY--------HYDLPQSLED 148 (504)
T ss_pred HhhHHHHHHHHHcCCCEEEEeccHhhcCcCCCCCCCHHHHHHHHHHHHHHHHcCCceEEEec--------CCCCCHHHHH
Confidence 358999999999999999999999999996 6888999999999999999999998665541 2347999987
Q ss_pred c-CCeeeecCChhHHHHHHHHHHHHHHHHh
Q 046146 125 I-PGSVFRSYSKPFMSYMQKFMTLIVDMMK 153 (829)
Q Consensus 125 ~-p~~~~R~~~~~y~~~~~~~~~~l~~~i~ 153 (829)
. -|-.=|..=..|.++++.-++++..+++
T Consensus 149 ~yGGW~n~~~i~~F~~YA~~~f~~fgdrVk 178 (504)
T PLN02814 149 EYGGWINRKIIEDFTAFADVCFREFGEDVK 178 (504)
T ss_pred hcCCcCChhHHHHHHHHHHHHHHHhCCcCC
Confidence 4 4432222223455555554554444443
No 42
>PRK09589 celA 6-phospho-beta-glucosidase; Reviewed
Probab=95.41 E-value=0.019 Score=67.31 Aligned_cols=100 Identities=16% Similarity=0.115 Sum_probs=74.3
Q ss_pred ccHHHHHHHHHHcCCCEEEEceeCCcccCC--CCeeeeccchhHHHHHHHHHHcCcEEEEecCcccccccCCCCCCcccc
Q 046146 46 AMWPELIQAAKEGGLNTIESYVFWSGHELS--PGKYSFEGRYDLVKFVKTVQQAGMYMLLRIGPFVAAEYNYGGVPVWLH 123 (829)
Q Consensus 46 ~~W~d~l~k~ka~GlNtV~~yv~Wn~hEp~--~G~~dF~g~~dl~~fl~~a~~~GL~VilrpGPyicaEw~~GG~P~WL~ 123 (829)
..|+++++.||++|+|+-++-|-|+-.+|. +|++|=.|..--+++|+.+.++||..++-- -.=-+|.||.
T Consensus 67 hry~eDi~Lm~~lG~~~yRfSIsWsRI~P~G~~~~~N~~gl~~Y~~lid~L~~~GI~P~VTL--------~H~dlP~~L~ 138 (476)
T PRK09589 67 HRYKEDIALFAEMGFKCFRTSIAWTRIFPQGDELEPNEEGLQFYDDLFDECLKQGIEPVVTL--------SHFEMPYHLV 138 (476)
T ss_pred HhhHHHHHHHHHcCCCEEEeccchhhcCcCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEe--------cCCCCCHHHH
Confidence 348999999999999999999999999997 566788888889999999999999866554 2335899997
Q ss_pred cc-CCeeeecCChhHHHHHHHHHHHHHHHHh
Q 046146 124 YI-PGSVFRSYSKPFMSYMQKFMTLIVDMMK 153 (829)
Q Consensus 124 ~~-p~~~~R~~~~~y~~~~~~~~~~l~~~i~ 153 (829)
+. -+-.=|..=..|.++++.-++++..+++
T Consensus 139 ~~yGGW~n~~~i~~F~~YA~~~f~~fgdrVk 169 (476)
T PRK09589 139 TEYGGWRNRKLIDFFVRFAEVVFTRYKDKVK 169 (476)
T ss_pred HhcCCcCChHHHHHHHHHHHHHHHHhcCCCC
Confidence 64 5532222223455555555555555554
No 43
>TIGR01233 lacG 6-phospho-beta-galactosidase. This enzyme is part of the tagatose-6-phosphate pathway of galactose-6-phosphate degradation.
Probab=95.30 E-value=0.032 Score=65.28 Aligned_cols=96 Identities=15% Similarity=0.139 Sum_probs=73.2
Q ss_pred ccHHHHHHHHHHcCCCEEEEceeCCcccCC-CCeeeeccchhHHHHHHHHHHcCcEEEEecCcccccccCCCCCCccccc
Q 046146 46 AMWPELIQAAKEGGLNTIESYVFWSGHELS-PGKYSFEGRYDLVKFVKTVQQAGMYMLLRIGPFVAAEYNYGGVPVWLHY 124 (829)
Q Consensus 46 ~~W~d~l~k~ka~GlNtV~~yv~Wn~hEp~-~G~~dF~g~~dl~~fl~~a~~~GL~VilrpGPyicaEw~~GG~P~WL~~ 124 (829)
..|+++++.||++|+|+-++-+-|+..+|. +|.+|=.|..--+++|+.+.++||..++--= .=-+|.||.+
T Consensus 53 hry~eDi~L~~~lG~~~yRfSIsWsRI~P~g~~~~N~~gl~~Y~~lid~l~~~GI~P~VTL~--------H~dlP~~L~~ 124 (467)
T TIGR01233 53 HKYPVDLELAEEYGVNGIRISIAWSRIFPTGYGEVNEKGVEFYHKLFAECHKRHVEPFVTLH--------HFDTPEALHS 124 (467)
T ss_pred hhHHHHHHHHHHcCCCEEEEecchhhccCCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEecc--------CCCCcHHHHH
Confidence 348999999999999999999999999996 6778878888999999999999999766542 3358999987
Q ss_pred cCCeeeecCChhHHHHHHHHHHHHHHHHh
Q 046146 125 IPGSVFRSYSKPFMSYMQKFMTLIVDMMK 153 (829)
Q Consensus 125 ~p~~~~R~~~~~y~~~~~~~~~~l~~~i~ 153 (829)
.-|- .++...++-.+|.+.+++.+.
T Consensus 125 ~GGW----~n~~~v~~F~~YA~~~f~~fg 149 (467)
T TIGR01233 125 NGDF----LNRENIEHFIDYAAFCFEEFP 149 (467)
T ss_pred cCCC----CCHHHHHHHHHHHHHHHHHhC
Confidence 5443 234444444444455555544
No 44
>PLN02849 beta-glucosidase
Probab=95.14 E-value=0.026 Score=66.54 Aligned_cols=100 Identities=18% Similarity=0.207 Sum_probs=74.1
Q ss_pred ccHHHHHHHHHHcCCCEEEEceeCCcccCC-CCeeeeccchhHHHHHHHHHHcCcEEEEecCcccccccCCCCCCccccc
Q 046146 46 AMWPELIQAAKEGGLNTIESYVFWSGHELS-PGKYSFEGRYDLVKFVKTVQQAGMYMLLRIGPFVAAEYNYGGVPVWLHY 124 (829)
Q Consensus 46 ~~W~d~l~k~ka~GlNtV~~yv~Wn~hEp~-~G~~dF~g~~dl~~fl~~a~~~GL~VilrpGPyicaEw~~GG~P~WL~~ 124 (829)
..|+++++.||++|+|+-++-|-|.-.+|. .|.+|=.|..--+++|+.+.++||.-++-- -.=-+|.||.+
T Consensus 79 hrY~eDI~Lm~~lG~~aYRfSIsWsRI~P~G~g~vN~~gl~fY~~lid~l~~~GI~P~VTL--------~H~dlP~~L~~ 150 (503)
T PLN02849 79 HKYKEDVKLMVETGLDAFRFSISWSRLIPNGRGSVNPKGLQFYKNFIQELVKHGIEPHVTL--------FHYDHPQYLED 150 (503)
T ss_pred HhHHHHHHHHHHcCCCeEEEeccHHhcCcCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEee--------cCCCCcHHHHH
Confidence 348999999999999999999999999997 477888888899999999999999866553 23358999987
Q ss_pred c-CCeeeecCChhHHHHHHHHHHHHHHHHh
Q 046146 125 I-PGSVFRSYSKPFMSYMQKFMTLIVDMMK 153 (829)
Q Consensus 125 ~-p~~~~R~~~~~y~~~~~~~~~~l~~~i~ 153 (829)
. -|-.=|..=..|.++++.-++++..+++
T Consensus 151 ~yGGW~nr~~v~~F~~YA~~~f~~fgDrVk 180 (503)
T PLN02849 151 DYGGWINRRIIKDFTAYADVCFREFGNHVK 180 (503)
T ss_pred hcCCcCCchHHHHHHHHHHHHHHHhcCcCC
Confidence 4 4532222223455555555555555554
No 45
>PRK10340 ebgA cryptic beta-D-galactosidase subunit alpha; Reviewed
Probab=95.14 E-value=0.071 Score=68.03 Aligned_cols=92 Identities=21% Similarity=0.242 Sum_probs=64.2
Q ss_pred cEEEEEEEecCCCchhhhccCCCceEEecCcceEEEEEEcCEEEEEEEeccCCceeeEEEeeeecCCCccEEEEEEecCC
Q 046146 466 DYLWYTTSIIFSEDEEFLRTGSQPVLLIESKGHTLHAFINQELVQGNSTYSTGTLVFSFTALIPLKAGKNKIDLLSMTVG 545 (829)
Q Consensus 466 Gyl~Y~T~v~~~~~~~~~~~~~~~~L~i~~~~D~~~vfvng~~v~G~~~~~~~~~~~~~~~~~~l~~g~~~L~ILven~G 545 (829)
+-.|||++|.++.. +.+++..|.+.++...+.|||||++| |...+.. ..+.|++.-.|+.|.|+|.|.|.+..
T Consensus 109 ~~g~Yrr~F~lp~~----~~gkrv~L~FeGV~s~a~VwvNG~~V-G~~~g~~--~pfefDIT~~l~~G~N~LaV~V~~~~ 181 (1021)
T PRK10340 109 PTGAYQRTFTLSDG----WQGKQTIIKFDGVETYFEVYVNGQYV-GFSKGSR--LTAEFDISAMVKTGDNLLCVRVMQWA 181 (1021)
T ss_pred CeEEEEEEEEeCcc----cccCcEEEEECccceEEEEEECCEEe-ccccCCC--ccEEEEcchhhCCCccEEEEEEEecC
Confidence 56799999988643 22456789999999999999999999 9765432 23555554446778899999887432
Q ss_pred cccccCCCCc----cCccce-EEEecC
Q 046146 546 LPSAGPFYEW----TGTGLT-SVKIKG 567 (829)
Q Consensus 546 r~NyG~~~~~----~~kGI~-~V~l~g 567 (829)
. |.++++ ...||. +|.|.-
T Consensus 182 d---~s~le~qd~w~~sGI~R~V~L~~ 205 (1021)
T PRK10340 182 D---STYLEDQDMWWLAGIFRDVYLVG 205 (1021)
T ss_pred C---CCccccCCccccccccceEEEEE
Confidence 2 233332 247998 888854
No 46
>COG3867 Arabinogalactan endo-1,4-beta-galactosidase [Carbohydrate transport and metabolism]
Probab=94.70 E-value=0.15 Score=55.40 Aligned_cols=111 Identities=24% Similarity=0.307 Sum_probs=75.2
Q ss_pred HHHHHHHHHHcCCCEEEEceeCCcccCCCCeeeeccchhHHHHHHHHHH---cCcEEEEecCcccccccCCCCCCcccc-
Q 046146 48 WPELIQAAKEGGLNTIESYVFWSGHELSPGKYSFEGRYDLVKFVKTVQQ---AGMYMLLRIGPFVAAEYNYGGVPVWLH- 123 (829)
Q Consensus 48 W~d~l~k~ka~GlNtV~~yv~Wn~hEp~~G~~dF~g~~dl~~fl~~a~~---~GL~VilrpGPyicaEw~~GG~P~WL~- 123 (829)
=+|.|+-+|+.|+|.|+.-| |+..--.-|.=-=.|+.|+.+.+++|+. .||+|+|.+= |. + .|-.
T Consensus 65 ~qD~~~iLK~~GvNyvRlRv-wndP~dsngn~yggGnnD~~k~ieiakRAk~~GmKVl~dFH-YS--D-------fwaDP 133 (403)
T COG3867 65 RQDALQILKNHGVNYVRLRV-WNDPYDSNGNGYGGGNNDLKKAIEIAKRAKNLGMKVLLDFH-YS--D-------FWADP 133 (403)
T ss_pred HHHHHHHHHHcCcCeEEEEE-ecCCccCCCCccCCCcchHHHHHHHHHHHHhcCcEEEeecc-ch--h-------hccCh
Confidence 37899999999999999876 6654333343333467899999988765 6999999872 21 1 1211
Q ss_pred ---ccCCeeeecCChhHHHHHHHHHHHHHHHHhhccccccCCCcEEEeccccccc
Q 046146 124 ---YIPGSVFRSYSKPFMSYMQKFMTLIVDMMKKEKLFASQGGPIILAQVENEYQ 175 (829)
Q Consensus 124 ---~~p~~~~R~~~~~y~~~~~~~~~~l~~~i~~~~l~~~~gGpII~~QiENEyg 175 (829)
+.|....--+-..-.+++-.|.+..+..++++ |=-+=||||-||-.
T Consensus 134 akQ~kPkaW~~l~fe~lk~avy~yTk~~l~~m~~e------Gi~pdmVQVGNEtn 182 (403)
T COG3867 134 AKQKKPKAWENLNFEQLKKAVYSYTKYVLTTMKKE------GILPDMVQVGNETN 182 (403)
T ss_pred hhcCCcHHhhhcCHHHHHHHHHHHHHHHHHHHHHc------CCCccceEeccccC
Confidence 12222122233455677888999999999854 44567999999974
No 47
>PRK09525 lacZ beta-D-galactosidase; Reviewed
Probab=94.70 E-value=0.13 Score=65.77 Aligned_cols=93 Identities=22% Similarity=0.298 Sum_probs=63.3
Q ss_pred ccEEEEEEEecCCCchhhhccCC-CceEEecCcceEEEEEEcCEEEEEEEeccCCceeeEEEeeeecCCCccEEEEEEec
Q 046146 465 TDYLWYTTSIIFSEDEEFLRTGS-QPVLLIESKGHTLHAFINQELVQGNSTYSTGTLVFSFTALIPLKAGKNKIDLLSMT 543 (829)
Q Consensus 465 ~Gyl~Y~T~v~~~~~~~~~~~~~-~~~L~i~~~~D~~~vfvng~~v~G~~~~~~~~~~~~~~~~~~l~~g~~~L~ILven 543 (829)
.+-.|||++|.++.+ +.+. +..|.+.++.-.+.|||||+++ |...+.. ..+.|++.-.|+.|.|.|.|.|..
T Consensus 119 n~~gwYrr~F~vp~~----w~~~~rv~L~FeGV~~~a~VwvNG~~V-G~~~g~~--~pfefDIT~~l~~G~N~L~V~V~~ 191 (1027)
T PRK09525 119 NPTGCYSLTFTVDES----WLQSGQTRIIFDGVNSAFHLWCNGRWV-GYSQDSR--LPAEFDLSPFLRAGENRLAVMVLR 191 (1027)
T ss_pred CCeEEEEEEEEeChh----hcCCCeEEEEECeeccEEEEEECCEEE-EeecCCC--ceEEEEChhhhcCCccEEEEEEEe
Confidence 367899999987643 1122 5678999999999999999999 9765432 235565544467788999998842
Q ss_pred CCcccccCCCCc----cCccce-EEEecC
Q 046146 544 VGLPSAGPFYEW----TGTGLT-SVKIKG 567 (829)
Q Consensus 544 ~Gr~NyG~~~~~----~~kGI~-~V~l~g 567 (829)
-- -|.++++ ...||. +|.|.-
T Consensus 192 ~s---dgs~~e~qd~w~~sGI~R~V~L~~ 217 (1027)
T PRK09525 192 WS---DGSYLEDQDMWRMSGIFRDVSLLH 217 (1027)
T ss_pred cC---CCCccccCCceeeccccceEEEEE
Confidence 21 1223332 236998 888743
No 48
>smart00812 Alpha_L_fucos Alpha-L-fucosidase. O-Glycosyl hydrolases (EC 3.2.1.-) are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site PUBMED:. Because the fold of proteins is better conserved than their sequences, some of the families can be grouped in 'clans'. Family 29 encompasses alpha-L-fucosidases, which is a lysosomal enzyme responsible for hydrolyzing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Deficiency of alpha-L-fucosidase results in the lysosomal storage disease fucosidosis.
Probab=94.34 E-value=4.4 Score=46.41 Aligned_cols=245 Identities=10% Similarity=0.104 Sum_probs=124.8
Q ss_pred eeCCCCCcccHHHHHHHHHHcCCCEEEE-------ceeCCcccCCCCeeeec-cchhHHHHHHHHHHcCcEEEEecCccc
Q 046146 38 IHYPRSVPAMWPELIQAAKEGGLNTIES-------YVFWSGHELSPGKYSFE-GRYDLVKFVKTVQQAGMYMLLRIGPFV 109 (829)
Q Consensus 38 ~Hy~R~~~~~W~d~l~k~ka~GlNtV~~-------yv~Wn~hEp~~G~~dF~-g~~dl~~fl~~a~~~GL~VilrpGPyi 109 (829)
+.+.+..++.|. +.+|++|+..|=. +-.|.-.-..-..-+-. ++.-|.+|.+.|+++||++-+=-.+
T Consensus 76 F~p~~fD~~~Wa---~~~k~AGakY~vlTaKHHDGF~lw~S~~t~~n~~~~~pkrDiv~el~~A~rk~Glk~G~Y~S~-- 150 (384)
T smart00812 76 FTAEKFDPEEWA---DLFKKAGAKYVVLTAKHHDGFCLWDSKYSNWNAVDTGPKRDLVGELADAVRKRGLKFGLYHSL-- 150 (384)
T ss_pred CCchhCCHHHHH---HHHHHcCCCeEEeeeeecCCccccCCCCCCCcccCCCCCcchHHHHHHHHHHcCCeEEEEcCH--
Confidence 344445666665 5678889875532 11254432211111111 2234567889999999977664332
Q ss_pred ccccCCCCCCccccccCCeeeecCChhHHHHHHHHHHHHHHHHhhccccccCCCcEEEeccccccccchhhccCcHHHHH
Q 046146 110 AAEYNYGGVPVWLHYIPGSVFRSYSKPFMSYMQKFMTLIVDMMKKEKLFASQGGPIILAQVENEYQWYEQFYKGGKEYAM 189 (829)
Q Consensus 110 caEw~~GG~P~WL~~~p~~~~R~~~~~y~~~~~~~~~~l~~~i~~~~l~~~~gGpII~~QiENEyg~~~~~y~~~~~y~~ 189 (829)
.+|.. |.|....+.-..+.+.+.|.++++.|+.+|.+.|.++ ||-|++- +-..+.. ...--++
T Consensus 151 -~DW~~---p~y~~~~~~~~~~~~~~~~~~y~~~~~~Ql~ELit~Y-------gpd~lWf-D~~~~~~-----~~~~~~~ 213 (384)
T smart00812 151 -FDWFN---PLYAGPTSSDEDPDNWPRFQEFVDDWLPQLRELVTRY-------KPDLLWF-DGGWEAP-----DDYWRSK 213 (384)
T ss_pred -HHhCC---CccccccccccccccchhHHHHHHHHHHHHHHHHhcC-------CCceEEE-eCCCCCc-----cchhcHH
Confidence 47764 5443321111234456788898888888888888632 3444441 1111110 1111245
Q ss_pred HHHHHHHhCCCcc--ceeeeccCC----CCCccccccCccccCccccCCcC------CCCCCcccCCCCCcccccCCCCC
Q 046146 190 WAASMAVSQNTGV--PWIMCQQYD----APDPVILVTPSTVTNSRLIHQKC------PKFGLRIGLDGNTKNCLIYPHRP 257 (829)
Q Consensus 190 ~l~~~~~~~g~~v--p~~~~~~~~----~~~~~i~t~~~~~~~~~~c~~~~------p~WG~~~~~d~~~~~~~~~~~r~ 257 (829)
.|.+++++..-+. .++ ++... .++....+.-.....+.....|. ..||=. ... ......+
T Consensus 214 ~l~~~~~~~qP~~~~vvv-n~R~~~~~~~~g~~~~~~e~~~p~~~~~~pwE~~~ti~~sWgy~----~~~---~~~~~ks 285 (384)
T smart00812 214 EFLAWLYNLSPVKDTVVV-NDRWGGTGCKHGGFYTDEERGAPGKLLPHPWETCTTIGKSWGYR----RNE---SDSDYKS 285 (384)
T ss_pred HHHHHHHHhCCCCceEEE-EccccccCCCCCCcccCcccCCCCCCCCCCcccccccCCCCCcC----CCC---CcccCCC
Confidence 6777777654332 122 22211 11111111000000000000111 134421 000 0023568
Q ss_pred hhHHHHHHHHHHHcCcee-eeeeEeecCCCCCCCCCCccccccCCCCcccCCCCCCChhHHHHHHHHHHHHhhccccCCC
Q 046146 258 HQDVAFSVARFIQKGGSV-HNYYMYHGGTNFGRTSGDFVTTSYDYDAPIDEYGLPRNPKWGHLKELHEAIMLCEGVLLNS 336 (829)
Q Consensus 258 ~~~~~~~~~~~l~~g~s~-~N~YM~hGGTNfG~~ga~~~~TSYDYdApl~E~G~~~tpKy~~lr~l~~~~~~~~~~l~~~ 336 (829)
++++...+.+..++|+++ +|. +-+.+|.+...--..|++++..++...+++-.+
T Consensus 286 ~~~li~~l~~~Vsk~GnlLLNV-------------------------gP~~dG~ip~~~~~~L~~iG~Wl~~ngeaIy~t 340 (384)
T smart00812 286 PKELIRDLVDIVSKGGNLLLNV-------------------------GPKADGTIPEEEEERLLEIGKWLKVNGEAIYGT 340 (384)
T ss_pred HHHHHHHHhhhcCCCceEEEcc-------------------------CCCCCCCCCHHHHHHHHHHHHHHHhCCceeecC
Confidence 899999999999999875 332 345678887777889999999998765544444
Q ss_pred C
Q 046146 337 D 337 (829)
Q Consensus 337 ~ 337 (829)
.
T Consensus 341 r 341 (384)
T smart00812 341 R 341 (384)
T ss_pred C
Confidence 3
No 49
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=94.02 E-value=0.28 Score=47.76 Aligned_cols=98 Identities=15% Similarity=0.184 Sum_probs=64.2
Q ss_pred HHHHHHHHcCCCEEEEcee----CC-----cccCCCCeeeeccchhHHHHHHHHHHcCcEEEEecCcccccccCCCCCCc
Q 046146 50 ELIQAAKEGGLNTIESYVF----WS-----GHELSPGKYSFEGRYDLVKFVKTVQQAGMYMLLRIGPFVAAEYNYGGVPV 120 (829)
Q Consensus 50 d~l~k~ka~GlNtV~~yv~----Wn-----~hEp~~G~~dF~g~~dl~~fl~~a~~~GL~VilrpGPyicaEw~~GG~P~ 120 (829)
+-++.+|++|.|+|.++.- |. .|.+.|+- .. .-|.+++++|++.||.|++|...- --|+..---|.
T Consensus 4 ~~~~~lk~~~v~si~i~a~~h~g~ayYPt~~~~~hp~L-~~---Dllge~v~a~h~~Girv~ay~~~~-~d~~~~~~HPe 78 (132)
T PF14871_consen 4 QFVDTLKEAHVNSITIFAKCHGGYAYYPTKVGPRHPGL-KR---DLLGEQVEACHERGIRVPAYFDFS-WDEDAAERHPE 78 (132)
T ss_pred HHHHHHHHhCCCEEEEEcccccEEEEccCCCCcCCCCC-Cc---CHHHHHHHHHHHCCCEEEEEEeee-cChHHHHhCCc
Confidence 3467889999999998542 22 44555554 22 256899999999999999998765 33333445699
Q ss_pred cccccCCee-------------eecCChhHHHHHHHHHHHHHHHH
Q 046146 121 WLHYIPGSV-------------FRSYSKPFMSYMQKFMTLIVDMM 152 (829)
Q Consensus 121 WL~~~p~~~-------------~R~~~~~y~~~~~~~~~~l~~~i 152 (829)
|+..+++-+ .-..|.+|++.+.+-+++|+..+
T Consensus 79 W~~~~~~G~~~~~~~~~~~~~~~~c~ns~Y~e~~~~~i~Ei~~~y 123 (132)
T PF14871_consen 79 WFVRDADGRPMRGERFGYPGWYTCCLNSPYREFLLEQIREILDRY 123 (132)
T ss_pred eeeECCCCCCcCCCCcCCCCceecCCCccHHHHHHHHHHHHHHcC
Confidence 998644311 11224578877766666665544
No 50
>COG2723 BglB Beta-glucosidase/6-phospho-beta-glucosidase/beta-galactosidase [Carbohydrate transport and metabolism]
Probab=92.55 E-value=0.18 Score=58.28 Aligned_cols=99 Identities=21% Similarity=0.247 Sum_probs=71.5
Q ss_pred cHHHHHHHHHHcCCCEEEEceeCCcccCCCCe--eeeccchhHHHHHHHHHHcCcEEEEecCcccccccCCCCCCccccc
Q 046146 47 MWPELIQAAKEGGLNTIESYVFWSGHELSPGK--YSFEGRYDLVKFVKTVQQAGMYMLLRIGPFVAAEYNYGGVPVWLHY 124 (829)
Q Consensus 47 ~W~d~l~k~ka~GlNtV~~yv~Wn~hEp~~G~--~dF~g~~dl~~fl~~a~~~GL~VilrpGPyicaEw~~GG~P~WL~~ 124 (829)
.++++++.||+||+|+.++-|.|+..-|.++. .+=.|..--+++++.+.++|+.-++--- .=-+|.||.+
T Consensus 60 rYkeDi~L~~emG~~~~R~SI~WsRIfP~g~~~e~N~~gl~fY~~l~del~~~gIep~vTL~--------Hfd~P~~L~~ 131 (460)
T COG2723 60 RYKEDIALAKEMGLNAFRTSIEWSRIFPNGDGGEVNEKGLRFYDRLFDELKARGIEPFVTLY--------HFDLPLWLQK 131 (460)
T ss_pred hhHHHHHHHHHcCCCEEEeeeeEEEeecCCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEec--------ccCCcHHHhh
Confidence 47899999999999999999999999997654 7778888899999999999999766542 3347999998
Q ss_pred c-CCeeeecCChhHHHHHHHHHHHHHHHHh
Q 046146 125 I-PGSVFRSYSKPFMSYMQKFMTLIVDMMK 153 (829)
Q Consensus 125 ~-p~~~~R~~~~~y~~~~~~~~~~l~~~i~ 153 (829)
. -|-.=|..=..|.+.++.-++++-.+++
T Consensus 132 ~ygGW~nR~~i~~F~~ya~~vf~~f~dkVk 161 (460)
T COG2723 132 PYGGWENRETVDAFARYAATVFERFGDKVK 161 (460)
T ss_pred ccCCccCHHHHHHHHHHHHHHHHHhcCcce
Confidence 5 4532233333344444443444333443
No 51
>PRK09936 hypothetical protein; Provisional
Probab=91.71 E-value=0.3 Score=53.17 Aligned_cols=57 Identities=25% Similarity=0.414 Sum_probs=47.2
Q ss_pred CCCcccHHHHHHHHHHcCCCEEEEceeCCcccCCCCeeeeccc-hhHHHHHHHHHHcCcEEEEe
Q 046146 42 RSVPAMWPELIQAAKEGGLNTIESYVFWSGHELSPGKYSFEGR-YDLVKFVKTVQQAGMYMLLR 104 (829)
Q Consensus 42 R~~~~~W~d~l~k~ka~GlNtV~~yv~Wn~hEp~~G~~dF~g~-~dl~~fl~~a~~~GL~Vilr 104 (829)
+++++.|+.+++.+|+.|++|+ .|-|...- .=||.+. ..|.+.++.|++.||.|+|.
T Consensus 34 ~~~~~qWq~~~~~~~~~G~~tL--ivQWt~yG----~~~fg~~~g~La~~l~~A~~~Gl~v~vG 91 (296)
T PRK09936 34 QVTDTQWQGLWSQLRLQGFDTL--VVQWTRYG----DADFGGQRGWLAKRLAAAQQAGLKLVVG 91 (296)
T ss_pred CCCHHHHHHHHHHHHHcCCcEE--EEEeeecc----CCCcccchHHHHHHHHHHHHcCCEEEEc
Confidence 5789999999999999999986 56676541 1188775 58999999999999998875
No 52
>PF02638 DUF187: Glycosyl hydrolase like GH101; InterPro: IPR003790 This entry describes proteins of unknown function.
Probab=91.06 E-value=1.5 Score=48.73 Aligned_cols=118 Identities=17% Similarity=0.195 Sum_probs=71.9
Q ss_pred CcccHHHHHHHHHHcCCCEEEEceeCCc-------ccC-------CCCe-eeeccchhHHHHHHHHHHcCcEEEEecCcc
Q 046146 44 VPAMWPELIQAAKEGGLNTIESYVFWSG-------HEL-------SPGK-YSFEGRYDLVKFVKTVQQAGMYMLLRIGPF 108 (829)
Q Consensus 44 ~~~~W~d~l~k~ka~GlNtV~~yv~Wn~-------hEp-------~~G~-~dF~g~~dl~~fl~~a~~~GL~VilrpGPy 108 (829)
.++.-++.|++++++|||+|=.-|.+.- .+| .+|. -.|+ -|+.+|+.|++.||.|..+. .+
T Consensus 17 ~~~~~~~~l~~l~~~~~N~V~~qVr~~gda~Y~S~~~p~s~~~~g~~~~~pg~D---pL~~~I~eaHkrGlevHAW~-~~ 92 (311)
T PF02638_consen 17 SKEQIDEMLDDLKSAGFNAVFVQVRPRGDALYPSDIEPWSGYLTGKQGKDPGFD---PLEFMIEEAHKRGLEVHAWF-RV 92 (311)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEEEEeCcEEEecccccccccccCCCCCCCCCcc---HHHHHHHHHHHcCCEEEEEE-Ee
Confidence 5667788999999999999976664321 112 1121 0144 79999999999999999886 11
Q ss_pred cccccCC----CCCCcccc-ccCCeeeec----CChhH----HHHHHHHHHHHHHHHhhccccccCCCcEEEecccc
Q 046146 109 VAAEYNY----GGVPVWLH-YIPGSVFRS----YSKPF----MSYMQKFMTLIVDMMKKEKLFASQGGPIILAQVEN 172 (829)
Q Consensus 109 icaEw~~----GG~P~WL~-~~p~~~~R~----~~~~y----~~~~~~~~~~l~~~i~~~~l~~~~gGpII~~QiEN 172 (829)
-..--.. -..|.|+. +.++..... .+..| ..+|+.|+..++..|.+ .+ +|=++|++-
T Consensus 93 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~lnP~~PeVr~~i~~~v~Eiv~-~Y------dvDGIhlDd 162 (311)
T PF02638_consen 93 GFNAPDVSHILKKHPEWFAVNHPGWVRTYEDANGGYYWLNPGHPEVRDYIIDIVKEIVK-NY------DVDGIHLDD 162 (311)
T ss_pred ecCCCchhhhhhcCchhheecCCCceeecccCCCCceEECCCCHHHHHHHHHHHHHHHh-cC------CCCeEEecc
Confidence 1000011 12478876 456643333 12222 35788887777777653 22 466778773
No 53
>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative. This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.
Probab=91.01 E-value=3.3 Score=44.79 Aligned_cols=133 Identities=17% Similarity=0.166 Sum_probs=79.0
Q ss_pred cccHHHHHHHHHHcCCCEEEEceeCCcccCCCCeeeeccchhHHHHHHHHHHcCcEEE-EecCcccccccCCCCCCcccc
Q 046146 45 PAMWPELIQAAKEGGLNTIESYVFWSGHELSPGKYSFEGRYDLVKFVKTVQQAGMYML-LRIGPFVAAEYNYGGVPVWLH 123 (829)
Q Consensus 45 ~~~W~d~l~k~ka~GlNtV~~yv~Wn~hEp~~G~~dF~g~~dl~~fl~~a~~~GL~Vi-lrpGPyicaEw~~GG~P~WL~ 123 (829)
..-|.+.|+.++++|++.|++-+ +.. ...+...+++ ..++..+.++++++||.|. +.+++ .+.+|
T Consensus 15 ~~~~~e~l~~~~~~G~~~VEl~~-~~~-~~~~~~~~~~-~~~~~~~~~~l~~~gl~i~~~~~~~-------~~~~~---- 80 (279)
T TIGR00542 15 GECWLERLQLAKTCGFDFVEMSV-DET-DDRLSRLDWS-REQRLALVNAIIETGVRIPSMCLSA-------HRRFP---- 80 (279)
T ss_pred CCCHHHHHHHHHHcCCCEEEEec-CCc-cchhhccCCC-HHHHHHHHHHHHHcCCCceeeecCC-------CccCc----
Confidence 35699999999999999999953 222 2223445554 3478899999999999865 44331 11111
Q ss_pred ccCCeeeecCChhHHHHHHHHHHHHHHHHhhccccccCCCcEEEecccccc--ccc-hhhccCcHHHHHHHHHHHHhCCC
Q 046146 124 YIPGSVFRSYSKPFMSYMQKFMTLIVDMMKKEKLFASQGGPIILAQVENEY--QWY-EQFYKGGKEYAMWAASMAVSQNT 200 (829)
Q Consensus 124 ~~p~~~~R~~~~~y~~~~~~~~~~l~~~i~~~~l~~~~gGpII~~QiENEy--g~~-~~~y~~~~~y~~~l~~~~~~~g~ 200 (829)
+-..|+.-+++..+++++.++..+. + |.++|.+-- .++ +.. ...+..-.+.++.+.+.+++.|+
T Consensus 81 ------l~~~~~~~r~~~~~~~~~~i~~a~~--l----G~~~v~~~~-~~~~~~~~~~~~~~~~~~~l~~l~~~A~~~Gv 147 (279)
T TIGR00542 81 ------LGSKDKAVRQQGLEIMEKAIQLARD--L----GIRTIQLAG-YDVYYEEHDEETRRRFREGLKEAVELAARAQV 147 (279)
T ss_pred ------CCCcCHHHHHHHHHHHHHHHHHHHH--h----CCCEEEecC-cccccCcCCHHHHHHHHHHHHHHHHHHHHcCC
Confidence 1223455566666677777777662 3 667775521 111 100 00011123566777778888888
Q ss_pred ccce
Q 046146 201 GVPW 204 (829)
Q Consensus 201 ~vp~ 204 (829)
.+-+
T Consensus 148 ~l~l 151 (279)
T TIGR00542 148 TLAV 151 (279)
T ss_pred EEEE
Confidence 6543
No 54
>smart00642 Aamy Alpha-amylase domain.
Probab=90.46 E-value=0.66 Score=46.81 Aligned_cols=65 Identities=15% Similarity=0.207 Sum_probs=46.2
Q ss_pred HHHHHHHHHHcCCCEEEEceeCCccc-------CCCCee-----eeccchhHHHHHHHHHHcCcEEEEecCcccccc
Q 046146 48 WPELIQAAKEGGLNTIESYVFWSGHE-------LSPGKY-----SFEGRYDLVKFVKTVQQAGMYMLLRIGPFVAAE 112 (829)
Q Consensus 48 W~d~l~k~ka~GlNtV~~yv~Wn~hE-------p~~G~~-----dF~g~~dl~~fl~~a~~~GL~VilrpGPyicaE 112 (829)
+.+.|..+|++|+|+|.+-=++...+ -.+..| .|....++.++++.|+++||.||+-.=|-=++.
T Consensus 21 i~~~l~yl~~lG~~~I~l~Pi~~~~~~~~~~~gY~~~d~~~i~~~~Gt~~d~~~lv~~~h~~Gi~vilD~V~NH~~~ 97 (166)
T smart00642 21 IIEKLDYLKDLGVTAIWLSPIFESPQGYPSYHGYDISDYKQIDPRFGTMEDFKELVDAAHARGIKVILDVVINHTSD 97 (166)
T ss_pred HHHHHHHHHHCCCCEEEECcceeCCCCCCCCCCcCccccCCCCcccCCHHHHHHHHHHHHHCCCEEEEEECCCCCCC
Confidence 45566779999999998764433222 122222 455678999999999999999999876555444
No 55
>TIGR01515 branching_enzym alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase. A sequence from Arabidopsis thaliana, GP|9294564, scores just above trusted, but appears either to contain corrupt sequence or, more likely, to be a pseudogene as some of the conserved catalytic residues common to the alpha amylase family are not conserved here.
Probab=89.14 E-value=5.6 Score=48.38 Aligned_cols=72 Identities=24% Similarity=0.210 Sum_probs=46.5
Q ss_pred EEeeCCCCCc-ccHHH---HH-HHHHHcCCCEEEE-ceeCCcccC----CCC-----eeeeccchhHHHHHHHHHHcCcE
Q 046146 36 ASIHYPRSVP-AMWPE---LI-QAAKEGGLNTIES-YVFWSGHEL----SPG-----KYSFEGRYDLVKFVKTVQQAGMY 100 (829)
Q Consensus 36 G~~Hy~R~~~-~~W~d---~l-~k~ka~GlNtV~~-yv~Wn~hEp----~~G-----~~dF~g~~dl~~fl~~a~~~GL~ 100 (829)
=|+|..-..+ -.++. +| .-+|++|+|+|+. .|+..-... .+- .-.|.+..||.+|++.|+++||.
T Consensus 142 Ye~hv~~~~~~g~~~~i~~~l~dyl~~LGvt~i~L~Pi~e~~~~~~wGY~~~~y~~~~~~~Gt~~dlk~lV~~~H~~Gi~ 221 (613)
T TIGR01515 142 YELHLGSWRHGLSYRELADQLIPYVKELGFTHIELLPVAEHPFDGSWGYQVTGYYAPTSRFGTPDDFMYFVDACHQAGIG 221 (613)
T ss_pred EEEehhhccCCCCHHHHHHHHHHHHHHcCCCEEEECCcccCCCCCCCCCCcccCcccccccCCHHHHHHHHHHHHHCCCE
Confidence 3566543332 22443 43 6679999999998 676431110 010 11355667999999999999999
Q ss_pred EEEecCc
Q 046146 101 MLLRIGP 107 (829)
Q Consensus 101 VilrpGP 107 (829)
|||-.=+
T Consensus 222 VilD~V~ 228 (613)
T TIGR01515 222 VILDWVP 228 (613)
T ss_pred EEEEecc
Confidence 9998543
No 56
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=88.21 E-value=5 Score=43.13 Aligned_cols=133 Identities=19% Similarity=0.209 Sum_probs=76.7
Q ss_pred ccHHHHHHHHHHcCCCEEEEceeCCcccCCCCeeeeccchhHHHHHHHHHHcCcEEE-EecCcccccccCCCCCCccccc
Q 046146 46 AMWPELIQAAKEGGLNTIESYVFWSGHELSPGKYSFEGRYDLVKFVKTVQQAGMYML-LRIGPFVAAEYNYGGVPVWLHY 124 (829)
Q Consensus 46 ~~W~d~l~k~ka~GlNtV~~yv~Wn~hEp~~G~~dF~g~~dl~~fl~~a~~~GL~Vi-lrpGPyicaEw~~GG~P~WL~~ 124 (829)
-.|++.++.++++|+..|++.+. ..|+ .....+|+ ..++..+.++++++||.|. +.++ +.-.+
T Consensus 16 ~~~~e~~~~~~~~G~~~iEl~~~-~~~~-~~~~~~~~-~~~~~~l~~~l~~~Gl~i~~~~~~----------~~~~~--- 79 (284)
T PRK13210 16 LSWEERLVFAKELGFDFVEMSVD-ESDE-RLARLDWS-KEERLSLVKAIYETGVRIPSMCLS----------GHRRF--- 79 (284)
T ss_pred CCHHHHHHHHHHcCCCeEEEecC-Cccc-ccccccCC-HHHHHHHHHHHHHcCCCceEEecc----------cccCc---
Confidence 36999999999999999999642 2222 11122333 3478999999999999865 3322 11000
Q ss_pred cCCeeeecCChhHHHHHHHHHHHHHHHHhhccccccCCCcEEEeccccccccc--hhhccCcHHHHHHHHHHHHhCCCcc
Q 046146 125 IPGSVFRSYSKPFMSYMQKFMTLIVDMMKKEKLFASQGGPIILAQVENEYQWY--EQFYKGGKEYAMWAASMAVSQNTGV 202 (829)
Q Consensus 125 ~p~~~~R~~~~~y~~~~~~~~~~l~~~i~~~~l~~~~gGpII~~QiENEyg~~--~~~y~~~~~y~~~l~~~~~~~g~~v 202 (829)
.+.+.|+.-+++..+.++++++..+. | |.++|.+---..+... ...+..-.+.++.+.+++.+.|+.+
T Consensus 80 ----~~~~~d~~~r~~~~~~~~~~i~~a~~--l----G~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~l 149 (284)
T PRK13210 80 ----PFGSRDPATRERALEIMKKAIRLAQD--L----GIRTIQLAGYDVYYEEKSEETRQRFIEGLAWAVEQAAAAQVML 149 (284)
T ss_pred ----CCCCCCHHHHHHHHHHHHHHHHHHHH--h----CCCEEEECCcccccccccHHHHHHHHHHHHHHHHHHHHhCCEE
Confidence 12345666666666666676666652 2 5666654210000000 0001122356788888888888765
Q ss_pred ce
Q 046146 203 PW 204 (829)
Q Consensus 203 p~ 204 (829)
-+
T Consensus 150 ~l 151 (284)
T PRK13210 150 AV 151 (284)
T ss_pred EE
Confidence 43
No 57
>COG3934 Endo-beta-mannanase [Carbohydrate transport and metabolism]
Probab=88.07 E-value=0.35 Score=55.64 Aligned_cols=157 Identities=15% Similarity=0.132 Sum_probs=105.4
Q ss_pred cEEECCEEeEEEEEEeeCCCCCcccHHHHHHHHHHcCCCEEEEceeCCcc-cC---CCCeeee-ccchhHHHHHHHHHHc
Q 046146 23 SLIIHGRRKLFLSASIHYPRSVPAMWPELIQAAKEGGLNTIESYVFWSGH-EL---SPGKYSF-EGRYDLVKFVKTVQQA 97 (829)
Q Consensus 23 ~~~idGkp~~~~sG~~Hy~R~~~~~W~d~l~k~ka~GlNtV~~yv~Wn~h-Ep---~~G~~dF-~g~~dl~~fl~~a~~~ 97 (829)
.|.++++++..++..--++++-.++=+++|.-|+.+|+++++.. -+- |+ ++|.-+- ++..-++.|++.|.+.
T Consensus 3 ~F~Lg~n~wprIanikmw~~~~~~ei~~dle~a~~vg~k~lR~f---iLDgEdc~d~~G~~na~s~~~y~~~fla~a~~l 79 (587)
T COG3934 3 VFALGLNRWPRIANIKMWPAIGNREIKADLEPAGFVGVKDLRLF---ILDGEDCRDKEGYRNAGSNVWYAAWFLAPAGYL 79 (587)
T ss_pred eEEeccccchhhhhhhHHHHhhhhhhhcccccccCccceeEEEE---EecCcchhhhhceecccccHHHHHHHhhhcccC
Confidence 37888888888877666777776777888999999999999987 334 54 3443322 2345789999999999
Q ss_pred CcEEEEecCcccccccCCCCCC---ccccc-cCCeeeecCChhHHHHHHHHHHHHHHHHhhccccccCCCcEEEeccccc
Q 046146 98 GMYMLLRIGPFVAAEYNYGGVP---VWLHY-IPGSVFRSYSKPFMSYMQKFMTLIVDMMKKEKLFASQGGPIILAQVENE 173 (829)
Q Consensus 98 GL~VilrpGPyicaEw~~GG~P---~WL~~-~p~~~~R~~~~~y~~~~~~~~~~l~~~i~~~~l~~~~gGpII~~QiENE 173 (829)
+|+|+++. |..==.+||.= .|--. .|+-. --||.++..-++|...+++-.+ ....|.+|-+-||
T Consensus 80 ~lkvlitl---ivg~~hmgg~Nw~Ipwag~~~pdn~--iyD~k~~~~~kkyvedlVk~yk-------~~ptI~gw~l~Ne 147 (587)
T COG3934 80 DLKVLITL---IVGLKHMGGTNWRIPWAGEQSPDNV--IYDPKFRGPGKKYVEDLVKPYK-------LDPTIAGWALRNE 147 (587)
T ss_pred cceEEEEE---eecccccCcceeEeecCCCCCcccc--ccchhhcccHHHHHHHHhhhhc-------cChHHHHHHhcCC
Confidence 99998874 33222345542 23321 23311 1266677777788887877555 3457888889999
Q ss_pred cccchhhccCcHHHHHHHHHHHH
Q 046146 174 YQWYEQFYKGGKEYAMWAASMAV 196 (829)
Q Consensus 174 yg~~~~~y~~~~~y~~~l~~~~~ 196 (829)
.....-..+..+++|+++|+-
T Consensus 148 --~lv~~p~s~N~f~~w~~emy~ 168 (587)
T COG3934 148 --PLVEAPISVNNFWDWSGEMYA 168 (587)
T ss_pred --ccccccCChhHHHHHHHHHHH
Confidence 322111257889999999963
No 58
>COG1649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=87.30 E-value=2.6 Score=48.52 Aligned_cols=123 Identities=20% Similarity=0.287 Sum_probs=79.6
Q ss_pred CcccHHHHHHHHHHcCCCEEEEce-------------eCCcccCCCCeee-eccchhHHHHHHHHHHcCcEEEEecCccc
Q 046146 44 VPAMWPELIQAAKEGGLNTIESYV-------------FWSGHELSPGKYS-FEGRYDLVKFVKTVQQAGMYMLLRIGPFV 109 (829)
Q Consensus 44 ~~~~W~d~l~k~ka~GlNtV~~yv-------------~Wn~hEp~~G~~d-F~g~~dl~~fl~~a~~~GL~VilrpGPyi 109 (829)
.+..-.+.|.+++++|+|||-.-| +|..-. ||++- =.|..-|...|++|++.||.|+.|.=||.
T Consensus 62 ~~~el~~~ld~l~~ln~NTv~~qV~~~G~~lypS~~~p~s~~~--~~~~~~~~g~DpLa~~I~~AHkr~l~v~aWf~~~~ 139 (418)
T COG1649 62 QRQELKDILDDLQKLNFNTVYPQVWNDGDALYPSAVLPWSDGL--PGVLGVDPGYDPLAFVIAEAHKRGLEVHAWFNPYR 139 (418)
T ss_pred cHHHHHHHHHHHHHcCCceeEEEEecCccccccccccccccCc--CcccCCCCCCChHHHHHHHHHhcCCeeeechhhcc
Confidence 566667899999999999997544 354433 44432 12334677788999999999999998888
Q ss_pred ccccCCCC---CCccccc-cCCeee-ecCC-------hhHHHHHHHHHHHHHHHHhhccccccCCCcEEEeccccccc
Q 046146 110 AAEYNYGG---VPVWLHY-IPGSVF-RSYS-------KPFMSYMQKFMTLIVDMMKKEKLFASQGGPIILAQVENEYQ 175 (829)
Q Consensus 110 caEw~~GG---~P~WL~~-~p~~~~-R~~~-------~~y~~~~~~~~~~l~~~i~~~~l~~~~gGpII~~QiENEyg 175 (829)
.|--..-. -|.|+.. .|+... |... .++.-+++.|+..++..+.. .+ .|-++|.+-=++
T Consensus 140 ~a~~~s~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ldPg~Pevq~~i~~lv~evV~-~Y------dvDGIQfDd~fy 210 (418)
T COG1649 140 MAPPTSPLTKRHPHWLTTKRPGWVYVRHQGWGKRVWLDPGIPEVQDFITSLVVEVVR-NY------DVDGIQFDDYFY 210 (418)
T ss_pred cCCCCChhHhhCCCCcccCCCCeEEEecCCceeeeEeCCCChHHHHHHHHHHHHHHh-CC------CCCceecceeec
Confidence 65422211 2677765 355432 3332 13456778887776665553 23 566788876655
No 59
>PF14307 Glyco_tran_WbsX: Glycosyltransferase WbsX
Probab=85.64 E-value=7.4 Score=43.84 Aligned_cols=135 Identities=16% Similarity=0.214 Sum_probs=86.5
Q ss_pred CCcccHHHHHHHHHHcCCCEEEEceeCCcccCCCCeeeeccchhHHHHHHHHHH---cCcEEEEecCcccccccCCCCC-
Q 046146 43 SVPAMWPELIQAAKEGGLNTIESYVFWSGHELSPGKYSFEGRYDLVKFVKTVQQ---AGMYMLLRIGPFVAAEYNYGGV- 118 (829)
Q Consensus 43 ~~~~~W~d~l~k~ka~GlNtV~~yv~Wn~hEp~~G~~dF~g~~dl~~fl~~a~~---~GL~VilrpGPyicaEw~~GG~- 118 (829)
..|+..+.-++.+|+.|++.--.|-.| |.|.+-|++-++..-+ .+|...|. |.+.--
T Consensus 55 ~~p~v~~~Q~~lA~~~GI~gF~~~~Yw-----------f~gk~lLe~p~~~~l~~~~~d~pFcl~--------WAN~~w~ 115 (345)
T PF14307_consen 55 RDPEVMEKQAELAKEYGIDGFCFYHYW-----------FNGKRLLEKPLENLLASKEPDFPFCLC--------WANENWT 115 (345)
T ss_pred CCHHHHHHHHHHHHHhCCCEEEEEeee-----------cCCchHHHHHHHHHHhcCCCCCcEEEE--------ECCChhh
Confidence 467788899999999999999888777 5677778777765543 34544443 333210
Q ss_pred CccccccCCeeeecCChhHH--HHHHHHHHHHHHHHhhccccccCCCcEEEeccccccccchhhccCcHHHHHHHHHHHH
Q 046146 119 PVWLHYIPGSVFRSYSKPFM--SYMQKFMTLIVDMMKKEKLFASQGGPIILAQVENEYQWYEQFYKGGKEYAMWAASMAV 196 (829)
Q Consensus 119 P~WL~~~p~~~~R~~~~~y~--~~~~~~~~~l~~~i~~~~l~~~~gGpII~~QiENEyg~~~~~y~~~~~y~~~l~~~~~ 196 (829)
=.|-.....+.+-. .|. +..++.++.|++.+++..++--+|-||+++=--.+ ...-++.++.+++.++
T Consensus 116 ~~w~g~~~~~l~~q---~y~~~~d~~~~~~~l~~~F~D~rYikVdGKPv~~Iy~p~~-------~pd~~~~~~~wr~~a~ 185 (345)
T PF14307_consen 116 RRWDGRNNEILIEQ---KYSGEDDWKEHFRYLLPYFKDPRYIKVDGKPVFLIYRPGD-------IPDIKEMIERWREEAK 185 (345)
T ss_pred hccCCCCccccccc---cCCchhHHHHHHHHHHHHhCCCCceeECCEEEEEEECccc-------ccCHHHHHHHHHHHHH
Confidence 12322222221111 121 22466778888999875555557789998832211 2256789999999999
Q ss_pred hCCCccceee
Q 046146 197 SQNTGVPWIM 206 (829)
Q Consensus 197 ~~g~~vp~~~ 206 (829)
++|+..+.+.
T Consensus 186 ~~G~~giyii 195 (345)
T PF14307_consen 186 EAGLPGIYII 195 (345)
T ss_pred HcCCCceEEE
Confidence 9999877554
No 60
>PRK09441 cytoplasmic alpha-amylase; Reviewed
Probab=83.17 E-value=1.9 Score=50.71 Aligned_cols=70 Identities=10% Similarity=0.224 Sum_probs=46.9
Q ss_pred eeCCCCC----cccHH---HHHHHHHHcCCCEEEEc-eeCCc-----ccCCCCe-e-------------eeccchhHHHH
Q 046146 38 IHYPRSV----PAMWP---ELIQAAKEGGLNTIESY-VFWSG-----HELSPGK-Y-------------SFEGRYDLVKF 90 (829)
Q Consensus 38 ~Hy~R~~----~~~W~---d~l~k~ka~GlNtV~~y-v~Wn~-----hEp~~G~-~-------------dF~g~~dl~~f 90 (829)
+|.|-|+ .+.|+ +.|.-+|++|+++|-+- ++-+. |--.+-- | .|....||.++
T Consensus 7 ~q~f~w~~~~~~~~~~~I~~kldyl~~LGvtaIwl~P~~~~~~~~~~hgY~~~D~~~~~~~~~~~~id~~fGt~~dl~~L 86 (479)
T PRK09441 7 MQYFEWYLPNDGKLWNRLAERAPELAEAGITAVWLPPAYKGTSGGYDVGYGVYDLFDLGEFDQKGTVRTKYGTKEELLNA 86 (479)
T ss_pred EEEEEeccCCCccHHHHHHHHHHHHHHcCCCEEEeCCCccCCCCCCCCCCCeecccccccccccCCcCcCcCCHHHHHHH
Confidence 4555543 35676 56777899999999866 43322 2222212 2 24456799999
Q ss_pred HHHHHHcCcEEEEecCc
Q 046146 91 VKTVQQAGMYMLLRIGP 107 (829)
Q Consensus 91 l~~a~~~GL~VilrpGP 107 (829)
++.|++.||+|||-.=+
T Consensus 87 i~~~H~~Gi~vi~D~V~ 103 (479)
T PRK09441 87 IDALHENGIKVYADVVL 103 (479)
T ss_pred HHHHHHCCCEEEEEECc
Confidence 99999999999998643
No 61
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=82.88 E-value=18 Score=38.74 Aligned_cols=130 Identities=15% Similarity=0.108 Sum_probs=71.0
Q ss_pred cHHHHHHHHHHcCCCEEEEceeCCcccCCCCeeeeccchhHHHHHHHHHHcCcEEEEecCcccccccCCCCCCccccccC
Q 046146 47 MWPELIQAAKEGGLNTIESYVFWSGHELSPGKYSFEGRYDLVKFVKTVQQAGMYMLLRIGPFVAAEYNYGGVPVWLHYIP 126 (829)
Q Consensus 47 ~W~d~l~k~ka~GlNtV~~yv~Wn~hEp~~G~~dF~g~~dl~~fl~~a~~~GL~VilrpGPyicaEw~~GG~P~WL~~~p 126 (829)
-|++.|+.++++|++.|++..-. .|+-.+ +++ ..++.++-++++++||.|.. .+| ..+++|..+.
T Consensus 14 ~l~~~l~~~~~~G~~~vEl~~~~-~~~~~~---~~~-~~~~~~l~~~~~~~gl~v~s-~~~------~~~~~~~~~~--- 78 (275)
T PRK09856 14 PIEHAFRDASELGYDGIEIWGGR-PHAFAP---DLK-AGGIKQIKALAQTYQMPIIG-YTP------ETNGYPYNMM--- 78 (275)
T ss_pred CHHHHHHHHHHcCCCEEEEccCC-cccccc---ccC-chHHHHHHHHHHHcCCeEEE-ecC------cccCcCcccc---
Confidence 49999999999999999984211 011111 121 24688899999999998753 222 1123443322
Q ss_pred CeeeecCChhHHHHHHHHHHHHHHHHhhccccccCCCcEEEeccccc-cc-cchhhccCcHHHHHHHHHHHHhCCCcc
Q 046146 127 GSVFRSYSKPFMSYMQKFMTLIVDMMKKEKLFASQGGPIILAQVENE-YQ-WYEQFYKGGKEYAMWAASMAVSQNTGV 202 (829)
Q Consensus 127 ~~~~R~~~~~y~~~~~~~~~~l~~~i~~~~l~~~~gGpII~~QiENE-yg-~~~~~y~~~~~y~~~l~~~~~~~g~~v 202 (829)
..++.-+++..+.+++.++.-+ . -|.+.|.+-.-.. +. .....+..-.+.++.|.+.+.+.|+.+
T Consensus 79 -----~~~~~~r~~~~~~~~~~i~~a~--~----lGa~~i~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~l 145 (275)
T PRK09856 79 -----LGDEHMRRESLDMIKLAMDMAK--E----MNAGYTLISAAHAGYLTPPNVIWGRLAENLSELCEYAENIGMDL 145 (275)
T ss_pred -----CCCHHHHHHHHHHHHHHHHHHH--H----hCCCEEEEcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCEE
Confidence 1234444544455555555544 1 2555555421111 00 000111223457788888888888754
No 62
>TIGR02631 xylA_Arthro xylose isomerase, Arthrobacter type. This model describes a D-xylose isomerase that is also active as a D-glucose isomerase. It is tetrameric and dependent on a divalent cation Mg2+, Co2+ or Mn2+ as characterized in Arthrobacter. Members of this family differ substantially from the D-xylose isomerases of family TIGR02630.
Probab=82.79 E-value=17 Score=41.67 Aligned_cols=135 Identities=16% Similarity=0.147 Sum_probs=70.6
Q ss_pred cccHHHHHHHHHHcCCCEEEEc----eeCCcccCCCCeeeeccchhHHHHHHHHHHcCcEEEE-ecCcccccccCCCCCC
Q 046146 45 PAMWPELIQAAKEGGLNTIESY----VFWSGHELSPGKYSFEGRYDLVKFVKTVQQAGMYMLL-RIGPFVAAEYNYGGVP 119 (829)
Q Consensus 45 ~~~W~d~l~k~ka~GlNtV~~y----v~Wn~hEp~~G~~dF~g~~dl~~fl~~a~~~GL~Vil-rpGPyicaEw~~GG~P 119 (829)
+....+++++++++|+..|+.. ++|..-+.+ -..++.++-+++++.||.|.. -++-+-...|..|
T Consensus 31 ~~~~~e~i~~la~~GfdgVE~~~~dl~P~~~~~~e-------~~~~~~~lk~~L~~~GL~v~~v~~nl~~~~~~~~g--- 100 (382)
T TIGR02631 31 ALDPVEAVHKLAELGAYGVTFHDDDLIPFGAPPQE-------RDQIVRRFKKALDETGLKVPMVTTNLFSHPVFKDG--- 100 (382)
T ss_pred CcCHHHHHHHHHHhCCCEEEecccccCCCCCChhH-------HHHHHHHHHHHHHHhCCeEEEeeccccCCccccCC---
Confidence 3456799999999999999964 222221100 023578899999999999663 3321111111112
Q ss_pred ccccccCCeeeecCChhHHHHHHHHHHHHHHHHhhccccccCCCcEEEecccc---cccc---chhhccCcHHHHHHHHH
Q 046146 120 VWLHYIPGSVFRSYSKPFMSYMQKFMTLIVDMMKKEKLFASQGGPIILAQVEN---EYQW---YEQFYKGGKEYAMWAAS 193 (829)
Q Consensus 120 ~WL~~~p~~~~R~~~~~y~~~~~~~~~~l~~~i~~~~l~~~~gGpII~~QiEN---Eyg~---~~~~y~~~~~y~~~l~~ 193 (829)
.+=+.|+..+++.-+++.+.+..-+ .| |.+.|.+-.-- ||.. +...+..-.+.++.|.+
T Consensus 101 ---------~las~d~~vR~~ai~~~kraId~A~--eL----Ga~~v~v~~G~~g~~~~~~~d~~~a~~~~~e~L~~lae 165 (382)
T TIGR02631 101 ---------GFTSNDRSVRRYALRKVLRNMDLGA--EL----GAETYVVWGGREGAEYDGAKDVRAALDRMREALNLLAA 165 (382)
T ss_pred ---------CCCCCCHHHHHHHHHHHHHHHHHHH--Hh----CCCEEEEccCCCCCcCccccCHHHHHHHHHHHHHHHHH
Confidence 1334466666665555555555554 23 55554443211 1110 00011122344566666
Q ss_pred HHHhCCCccce
Q 046146 194 MAVSQNTGVPW 204 (829)
Q Consensus 194 ~~~~~g~~vp~ 204 (829)
.+.+.|.+|.+
T Consensus 166 ~A~~~G~GV~l 176 (382)
T TIGR02631 166 YAEDQGYGLRF 176 (382)
T ss_pred HHHhhCCCcEE
Confidence 66776655543
No 63
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=82.66 E-value=2.7 Score=42.32 Aligned_cols=125 Identities=14% Similarity=0.094 Sum_probs=74.7
Q ss_pred HHHHHHcCCCEEEEceeCCcccCCCCeeeeccchhHHHHHHHHHHcCcEEEEecCcccccccCCCCCCccccccCCeeee
Q 046146 52 IQAAKEGGLNTIESYVFWSGHELSPGKYSFEGRYDLVKFVKTVQQAGMYMLLRIGPFVAAEYNYGGVPVWLHYIPGSVFR 131 (829)
Q Consensus 52 l~k~ka~GlNtV~~yv~Wn~hEp~~G~~dF~g~~dl~~fl~~a~~~GL~VilrpGPyicaEw~~GG~P~WL~~~p~~~~R 131 (829)
|+.++++|+..|+....+......+ ...++++.++++++||.+..--.+.. + .. +....+
T Consensus 1 l~~~~~~G~~~vE~~~~~~~~~~~~-------~~~~~~~~~~~~~~gl~i~~~~~~~~---~---~~-------~~~~~~ 60 (213)
T PF01261_consen 1 LEAAAEAGFDGVELRFDDGQPWDEK-------DDEAEELRRLLEDYGLKIASLHPPTN---F---WS-------PDEENG 60 (213)
T ss_dssp HHHHHHTTHSEEEEEHHHHSHHTHH-------HHHHHHHHHHHHHTTCEEEEEEEEES---S---SC-------TGTTST
T ss_pred ChHHHHcCCCEEEEecCCCcccccc-------hHHHHHHHHHHHHcCCeEEEEecccc---c---cc-------cccccc
Confidence 6789999999999987644322222 34799999999999999653221110 0 00 111134
Q ss_pred cCChhHHHHHHHHHHHHHHHHhhccccccCCCcEEEeccc--cccccc--hhhccCcHHHHHHHHHHHHhCCCccc
Q 046146 132 SYSKPFMSYMQKFMTLIVDMMKKEKLFASQGGPIILAQVE--NEYQWY--EQFYKGGKEYAMWAASMAVSQNTGVP 203 (829)
Q Consensus 132 ~~~~~y~~~~~~~~~~l~~~i~~~~l~~~~gGpII~~QiE--NEyg~~--~~~y~~~~~y~~~l~~~~~~~g~~vp 203 (829)
+..++ ++...+.+.+.++..+. + |.+.|.+..= +..... ...+..-.+.++.+.+.+.+.|+.+-
T Consensus 61 ~~~~~-r~~~~~~~~~~i~~a~~--l----g~~~i~~~~g~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~i~ 129 (213)
T PF01261_consen 61 SANDE-REEALEYLKKAIDLAKR--L----GAKYIVVHSGRYPSGPEDDTEENWERLAENLRELAEIAEEYGVRIA 129 (213)
T ss_dssp TSSSH-HHHHHHHHHHHHHHHHH--H----TBSEEEEECTTESSSTTSSHHHHHHHHHHHHHHHHHHHHHHTSEEE
T ss_pred Ccchh-hHHHHHHHHHHHHHHHH--h----CCCceeecCcccccccCCCHHHHHHHHHHHHHHHHhhhhhhcceEE
Confidence 44444 77777788888887773 3 6677777643 111110 11111334677788888888887653
No 64
>PF13200 DUF4015: Putative glycosyl hydrolase domain
Probab=82.19 E-value=4.6 Score=45.08 Aligned_cols=111 Identities=21% Similarity=0.262 Sum_probs=70.6
Q ss_pred CcccHHHHHHHHHHcCCCEEEEc-------eeCCcccCCCCeeeec-c-chhHHHHHHHHHHcCcEEEEecCcccccccC
Q 046146 44 VPAMWPELIQAAKEGGLNTIESY-------VFWSGHELSPGKYSFE-G-RYDLVKFVKTVQQAGMYMLLRIGPFVAAEYN 114 (829)
Q Consensus 44 ~~~~W~d~l~k~ka~GlNtV~~y-------v~Wn~hEp~~G~~dF~-g-~~dl~~fl~~a~~~GL~VilrpGPyicaEw~ 114 (829)
.++.-+..|+.+++.|+|+|=+= |.+..-.|..-+.... . ..|+.++++.++++|||+|.|.=-+---...
T Consensus 11 ~~~~~~~~~~~i~~t~lNavVIDvKdd~G~i~y~s~~~~~~~~ga~~~~i~D~~~l~~~l~e~gIY~IARIv~FkD~~la 90 (316)
T PF13200_consen 11 SPERLDKLLDLIKRTELNAVVIDVKDDDGNITYDSQVPLAREIGAVKPYIKDLKALVKKLKEHGIYPIARIVVFKDPVLA 90 (316)
T ss_pred CHHHHHHHHHHHHhcCCceEEEEEecCCceEEecCCCchhhhcccccccccCHHHHHHHHHHCCCEEEEEEEEecChHHh
Confidence 34567889999999999998653 3454444433322221 1 3699999999999999999998433211110
Q ss_pred CCCCCccccc-cCCeeeecCC-----hhHHHHHHHHHHHHHHHHhhc
Q 046146 115 YGGVPVWLHY-IPGSVFRSYS-----KPFMSYMQKFMTLIVDMMKKE 155 (829)
Q Consensus 115 ~GG~P~WL~~-~p~~~~R~~~-----~~y~~~~~~~~~~l~~~i~~~ 155 (829)
. --|.|-.+ ..+-..|..+ .+|.+++.+|.-.|++.+++.
T Consensus 91 ~-~~pe~av~~~~G~~w~d~~~~~WvnP~~~evw~Y~i~IA~Eaa~~ 136 (316)
T PF13200_consen 91 E-AHPEWAVKTKDGSVWRDNEGEAWVNPYSKEVWDYNIDIAKEAAKL 136 (316)
T ss_pred h-hChhhEEECCCCCcccCCCCCccCCCCCHHHHHHHHHHHHHHHHc
Confidence 0 13555542 2221233221 258899999999999998854
No 65
>cd00019 AP2Ec AP endonuclease family 2; These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites; the alignment also contains hexulose-6-phosphate isomerases, enzymes that catalyze the epimerization of D-arabino-6-hexulose 3-phosphate to D-fructose 6-phosphate, via cleaving the phosphoesterbond with the sugar.
Probab=82.14 E-value=15 Score=39.62 Aligned_cols=128 Identities=14% Similarity=0.046 Sum_probs=70.8
Q ss_pred ccHHHHHHHHHHcCCCEEEEceeCCcccCCCCeeeeccchhHHHHHHHHHHc-CcEEEEecCcccccccCCCCCCccccc
Q 046146 46 AMWPELIQAAKEGGLNTIESYVFWSGHELSPGKYSFEGRYDLVKFVKTVQQA-GMYMLLRIGPFVAAEYNYGGVPVWLHY 124 (829)
Q Consensus 46 ~~W~d~l~k~ka~GlNtV~~yv~Wn~hEp~~G~~dF~g~~dl~~fl~~a~~~-GL~VilrpGPyicaEw~~GG~P~WL~~ 124 (829)
.-|++.|+.+|++|++.|++-+........+ .....++.++.++++++ ++.+.+- +||.
T Consensus 10 ~~l~~~l~~a~~~G~d~vEl~~~~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~i~~~-~~~~--------------- 69 (279)
T cd00019 10 FGLENALKRAKEIGFDTVAMFLGNPRSWLSR----PLKKERAEKFKAIAEEGPSICLSVH-APYL--------------- 69 (279)
T ss_pred ccHHHHHHHHHHcCCCEEEEEcCCCCccCCC----CCCHHHHHHHHHHHHHcCCCcEEEE-cCce---------------
Confidence 6699999999999999999987543211111 11346899999999999 7665543 2321
Q ss_pred cCCeeeecCChhHHHHHHHHHHHHHHHHhhccccccCCCcEEEeccccccc-cchhhccCcHHHHHHHHHHHHhCCCcc
Q 046146 125 IPGSVFRSYSKPFMSYMQKFMTLIVDMMKKEKLFASQGGPIILAQVENEYQ-WYEQFYKGGKEYAMWAASMAVSQNTGV 202 (829)
Q Consensus 125 ~p~~~~R~~~~~y~~~~~~~~~~l~~~i~~~~l~~~~gGpII~~QiENEyg-~~~~~y~~~~~y~~~l~~~~~~~g~~v 202 (829)
..+...++.-+++....+.+.++..+. + |-+.|.+..-..-+ .....+..-.+-++.+.+.+++.|+.+
T Consensus 70 ---~~~~~~~~~~r~~~~~~~~~~i~~A~~--l----G~~~v~~~~g~~~~~~~~~~~~~~~~~l~~l~~~a~~~gi~l 139 (279)
T cd00019 70 ---INLASPDKEKREKSIERLKDEIERCEE--L----GIRLLVFHPGSYLGQSKEEGLKRVIEALNELIDKAETKGVVI 139 (279)
T ss_pred ---eccCCCCHHHHHHHHHHHHHHHHHHHH--c----CCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHhccCCCCEE
Confidence 012233444445544555555555552 2 55666665443221 111111112234455555555666654
No 66
>PRK09989 hypothetical protein; Provisional
Probab=81.70 E-value=14 Score=39.35 Aligned_cols=43 Identities=21% Similarity=0.390 Sum_probs=34.8
Q ss_pred cHHHHHHHHHHcCCCEEEEceeCCcccCCCCeeeeccchhHHHHHHHHHHcCcEEEE
Q 046146 47 MWPELIQAAKEGGLNTIESYVFWSGHELSPGKYSFEGRYDLVKFVKTVQQAGMYMLL 103 (829)
Q Consensus 47 ~W~d~l~k~ka~GlNtV~~yv~Wn~hEp~~G~~dF~g~~dl~~fl~~a~~~GL~Vil 103 (829)
-.+++|++++++|+..|++..+|. .+.+.+.++++++||.|..
T Consensus 16 ~l~~~l~~~~~~Gfd~VEl~~~~~--------------~~~~~~~~~l~~~Gl~v~~ 58 (258)
T PRK09989 16 PFIERFAAARKAGFDAVEFLFPYD--------------YSTLQIQKQLEQNHLTLAL 58 (258)
T ss_pred CHHHHHHHHHHcCCCEEEECCccc--------------CCHHHHHHHHHHcCCcEEE
Confidence 378999999999999999854432 2467788889999999774
No 67
>PF00128 Alpha-amylase: Alpha amylase, catalytic domain; InterPro: IPR006047 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain, such as alpha-amylase, belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. The maltogenic alpha-amylase is an enzyme which catalyses hydrolysis of (1-4)-alpha-D-glucosidic linkages in polysaccharides so as to remove successive alpha-maltose residues from the non-reducing ends of the chains in the conversion of starch to maltose. Other enzymes include neopullulanase, which hydrolyses pullulan to panose, and cyclomaltodextrinase, which hydrolyses cyclodextrins. This entry represents the catalytic domain found in several protein members of this family. It has a structure consisting of an 8 stranded alpha/beta barrel that contains the active site, interrupted by a ~70 amino acid calcium-binding domain protruding between beta strand 3 and alpha helix 3, and a carboxyl-terminal Greek key beta-barrel domain []. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; GO: 0003824 catalytic activity, 0043169 cation binding, 0005975 carbohydrate metabolic process; PDB: 3FAX_A 3FAW_A 2DH3_B 2DH2_A 1CIU_A 1A47_A 3BMW_A 3BMV_A 2FH8_A 2FH6_A ....
Probab=81.17 E-value=1.5 Score=46.88 Aligned_cols=59 Identities=17% Similarity=0.229 Sum_probs=41.0
Q ss_pred HHHHHHHHHcCCCEEEEceeCCcccCCC--Ceee-------eccchhHHHHHHHHHHcCcEEEEecCc
Q 046146 49 PELIQAAKEGGLNTIESYVFWSGHELSP--GKYS-------FEGRYDLVKFVKTVQQAGMYMLLRIGP 107 (829)
Q Consensus 49 ~d~l~k~ka~GlNtV~~yv~Wn~hEp~~--G~~d-------F~g~~dl~~fl~~a~~~GL~VilrpGP 107 (829)
.+.|.-+|++|+|+|.+-=++......- ..-| |....+|.++++.|++.||+|||-.=|
T Consensus 7 ~~kLdyl~~lGv~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~Gt~~d~~~Lv~~~h~~gi~VilD~V~ 74 (316)
T PF00128_consen 7 IDKLDYLKDLGVNAIWLSPIFESPNGYHGYDPSDYYAVDPRFGTMEDFKELVDAAHKRGIKVILDVVP 74 (316)
T ss_dssp HHTHHHHHHHTESEEEESS-EESSSSTTTTSESEEEEESTTTBHHHHHHHHHHHHHHTTCEEEEEEET
T ss_pred HHhhHHHHHcCCCceecccccccccccccccceeeeccccccchhhhhhhhhhccccccceEEEeeec
Confidence 3568889999999999875444221111 1222 334579999999999999999987643
No 68
>TIGR03234 OH-pyruv-isom hydroxypyruvate isomerase. This enzyme interconverts tartronate semi-aldehyde (TSA, aka 2-hydroxy 3-oxopropionate) and hydroxypyruvate. The E. coli enzyme has been characterized and found to be specific for TSA, contain no cofactors, and have a rather high Km for hydroxypyruvate of 12.5 mM. The gene is ofter found in association with glyoxalate carboligase (which produces TSA), but has been shown to have no effect on growth on glyoxalate when knocked out. This is consistent with the fact that the gene for tartronate semialdehyde reductase (glxR) is also associated and may have primary responsibility for the catabolism of TSA.
Probab=81.11 E-value=21 Score=37.84 Aligned_cols=43 Identities=21% Similarity=0.318 Sum_probs=35.5
Q ss_pred cHHHHHHHHHHcCCCEEEEceeCCcccCCCCeeeeccchhHHHHHHHHHHcCcEEEE
Q 046146 47 MWPELIQAAKEGGLNTIESYVFWSGHELSPGKYSFEGRYDLVKFVKTVQQAGMYMLL 103 (829)
Q Consensus 47 ~W~d~l~k~ka~GlNtV~~yv~Wn~hEp~~G~~dF~g~~dl~~fl~~a~~~GL~Vil 103 (829)
-+++.+++++++|++.|+...++ ..++..+.++++++||.|..
T Consensus 15 ~l~e~~~~~~e~G~~~vEl~~~~--------------~~~~~~l~~~l~~~gl~v~~ 57 (254)
T TIGR03234 15 PFLERFAAAAQAGFTGVEYLFPY--------------DWDAEALKARLAAAGLEQVL 57 (254)
T ss_pred CHHHHHHHHHHcCCCEEEecCCc--------------cCCHHHHHHHHHHcCCeEEE
Confidence 48999999999999999985432 12688899999999999764
No 69
>PRK13209 L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=80.96 E-value=18 Score=38.91 Aligned_cols=131 Identities=14% Similarity=0.198 Sum_probs=75.1
Q ss_pred cHHHHHHHHHHcCCCEEEEceeCCcccCCCCeeeeccchhHHHHHHHHHHcCcEEE-EecCcccccccCCCCCCcccccc
Q 046146 47 MWPELIQAAKEGGLNTIESYVFWSGHELSPGKYSFEGRYDLVKFVKTVQQAGMYML-LRIGPFVAAEYNYGGVPVWLHYI 125 (829)
Q Consensus 47 ~W~d~l~k~ka~GlNtV~~yv~Wn~hEp~~G~~dF~g~~dl~~fl~~a~~~GL~Vi-lrpGPyicaEw~~GG~P~WL~~~ 125 (829)
-|.+.++.++++|+..|+..+. ..++ ....++++ ..+++++.++++++||.|. +.++.. ..++
T Consensus 22 ~~~e~~~~~~~~G~~~iEl~~~-~~~~-~~~~~~~~-~~~~~~l~~~l~~~gl~i~~~~~~~~-------~~~~------ 85 (283)
T PRK13209 22 CWLEKLAIAKTAGFDFVEMSVD-ESDE-RLARLDWS-REQRLALVNALVETGFRVNSMCLSAH-------RRFP------ 85 (283)
T ss_pred CHHHHHHHHHHcCCCeEEEecC-cccc-chhccCCC-HHHHHHHHHHHHHcCCceeEEecccc-------cccC------
Confidence 5999999999999999999642 1111 01122333 2368899999999999875 332211 0011
Q ss_pred CCeeeecCChhHHHHHHHHHHHHHHHHhhccccccCCCcEEEecccccccc-c--hhhccCcHHHHHHHHHHHHhCCCcc
Q 046146 126 PGSVFRSYSKPFMSYMQKFMTLIVDMMKKEKLFASQGGPIILAQVENEYQW-Y--EQFYKGGKEYAMWAASMAVSQNTGV 202 (829)
Q Consensus 126 p~~~~R~~~~~y~~~~~~~~~~l~~~i~~~~l~~~~gGpII~~QiENEyg~-~--~~~y~~~~~y~~~l~~~~~~~g~~v 202 (829)
+-+.++.-++.....+++.++..+. + |.++|.+.-- +... . ...+..-.+.++.|.+++++.|+.+
T Consensus 86 ----~~~~~~~~r~~~~~~~~~~i~~a~~--l----G~~~i~~~~~-~~~~~~~~~~~~~~~~~~l~~l~~~A~~~GV~i 154 (283)
T PRK13209 86 ----LGSEDDAVRAQALEIMRKAIQLAQD--L----GIRVIQLAGY-DVYYEQANNETRRRFIDGLKESVELASRASVTL 154 (283)
T ss_pred ----CCCCCHHHHHHHHHHHHHHHHHHHH--c----CCCEEEECCc-cccccccHHHHHHHHHHHHHHHHHHHHHhCCEE
Confidence 1134555566666667777777662 3 6777755310 0000 0 0000011456778888888888765
Q ss_pred ce
Q 046146 203 PW 204 (829)
Q Consensus 203 p~ 204 (829)
-+
T Consensus 155 ~i 156 (283)
T PRK13209 155 AF 156 (283)
T ss_pred EE
Confidence 43
No 70
>PRK01060 endonuclease IV; Provisional
Probab=79.35 E-value=17 Score=39.10 Aligned_cols=93 Identities=13% Similarity=0.203 Sum_probs=60.4
Q ss_pred HHHHHHHHHHcCCCEEEEceeCCcccCCCCeeeeccchhHHHHHHHHHHcCcEE---EEecCcccccccCCCCCCccccc
Q 046146 48 WPELIQAAKEGGLNTIESYVFWSGHELSPGKYSFEGRYDLVKFVKTVQQAGMYM---LLRIGPFVAAEYNYGGVPVWLHY 124 (829)
Q Consensus 48 W~d~l~k~ka~GlNtV~~yv~Wn~hEp~~G~~dF~g~~dl~~fl~~a~~~GL~V---ilrpGPyicaEw~~GG~P~WL~~ 124 (829)
+++.+++++++|++.|+..+.. -|.-.++.++- .++.++-+++++.||.+ .+ -+||.
T Consensus 14 ~~~~l~~~~~~G~d~vEl~~~~-p~~~~~~~~~~---~~~~~lk~~~~~~gl~~~~~~~-h~~~~--------------- 73 (281)
T PRK01060 14 LEGAVAEAAEIGANAFMIFTGN-PQQWKRKPLEE---LNIEAFKAACEKYGISPEDILV-HAPYL--------------- 73 (281)
T ss_pred HHHHHHHHHHcCCCEEEEECCC-CCCCcCCCCCH---HHHHHHHHHHHHcCCCCCceEE-ecceE---------------
Confidence 8899999999999999997531 12211222222 26888999999999973 32 23331
Q ss_pred cCCeeeecCChhHHHHHHHHHHHHHHHHhhccccccCCCcEEEec
Q 046146 125 IPGSVFRSYSKPFMSYMQKFMTLIVDMMKKEKLFASQGGPIILAQ 169 (829)
Q Consensus 125 ~p~~~~R~~~~~y~~~~~~~~~~l~~~i~~~~l~~~~gGpII~~Q 169 (829)
+.+-+.|+..+++..+.+.+.++.-+ .+ |.++|.+.
T Consensus 74 ---~nl~~~d~~~r~~s~~~~~~~i~~A~--~l----ga~~vv~h 109 (281)
T PRK01060 74 ---INLGNPNKEILEKSRDFLIQEIERCA--AL----GAKLLVFH 109 (281)
T ss_pred ---ecCCCCCHHHHHHHHHHHHHHHHHHH--Hc----CCCEEEEc
Confidence 12334567777877777777777765 23 55666554
No 71
>PRK14706 glycogen branching enzyme; Provisional
Probab=79.05 E-value=27 Score=42.85 Aligned_cols=53 Identities=15% Similarity=0.210 Sum_probs=36.0
Q ss_pred HHHHHcCCCEEEEc-ee-------CCcccCC--CCeeeeccchhHHHHHHHHHHcCcEEEEec
Q 046146 53 QAAKEGGLNTIESY-VF-------WSGHELS--PGKYSFEGRYDLVKFVKTVQQAGMYMLLRI 105 (829)
Q Consensus 53 ~k~ka~GlNtV~~y-v~-------Wn~hEp~--~G~~dF~g~~dl~~fl~~a~~~GL~Vilrp 105 (829)
.-+|++|+|+|+.= |. |.+.--- .=.=.|....||.+|++.|+++||.|||-.
T Consensus 175 ~ylk~lG~t~velmPv~e~~~~~~wGY~~~~~~~~~~~~g~~~~~~~lv~~~H~~gi~VilD~ 237 (639)
T PRK14706 175 EYVTYMGYTHVELLGVMEHPFDGSWGYQVTGYYAPTSRLGTPEDFKYLVNHLHGLGIGVILDW 237 (639)
T ss_pred HHHHHcCCCEEEccchhcCCCCCCCCcCcccccccccccCCHHHHHHHHHHHHHCCCEEEEEe
Confidence 56899999999942 21 4331100 001124456799999999999999999874
No 72
>PRK05402 glycogen branching enzyme; Provisional
Probab=78.83 E-value=23 Score=44.00 Aligned_cols=51 Identities=29% Similarity=0.451 Sum_probs=37.0
Q ss_pred HHHHHcCCCEEEEc-ee-------CCcccCCCCee-----eeccchhHHHHHHHHHHcCcEEEEecC
Q 046146 53 QAAKEGGLNTIESY-VF-------WSGHELSPGKY-----SFEGRYDLVKFVKTVQQAGMYMLLRIG 106 (829)
Q Consensus 53 ~k~ka~GlNtV~~y-v~-------Wn~hEp~~G~~-----dF~g~~dl~~fl~~a~~~GL~VilrpG 106 (829)
.-+|++|+|+|+.= |+ |.+ .+.-| .|.+..||.+|++.|+++||.|||-.=
T Consensus 273 ~ylk~LGv~~i~L~Pi~e~~~~~~~GY---~~~~y~ai~~~~Gt~~dfk~lV~~~H~~Gi~VilD~V 336 (726)
T PRK05402 273 PYVKEMGFTHVELLPIAEHPFDGSWGY---QPTGYYAPTSRFGTPDDFRYFVDACHQAGIGVILDWV 336 (726)
T ss_pred HHHHHcCCCEEEECCcccCCCCCCCCC---CcccCCCcCcccCCHHHHHHHHHHHHHCCCEEEEEEC
Confidence 66699999999854 43 322 11111 355678999999999999999999843
No 73
>KOG2230 consensus Predicted beta-mannosidase [Carbohydrate transport and metabolism]
Probab=77.48 E-value=22 Score=42.27 Aligned_cols=149 Identities=17% Similarity=0.250 Sum_probs=91.5
Q ss_pred CcEEECCEEeEEEEEEeeCC-----CCCcccHHHHHHHHHHcCCCEEEEceeCCcccCCCCeeeeccchhHHHHHHHHHH
Q 046146 22 RSLIIHGRRKLFLSASIHYP-----RSVPAMWPELIQAAKEGGLNTIESYVFWSGHELSPGKYSFEGRYDLVKFVKTVQQ 96 (829)
Q Consensus 22 ~~~~idGkp~~~~sG~~Hy~-----R~~~~~W~d~l~k~ka~GlNtV~~yv~Wn~hEp~~G~~dF~g~~dl~~fl~~a~~ 96 (829)
-.|.|+|.|.++-++.--+. |..-+.-+-.|+-++++|+|++++. .- |. ..-+.|-++|.+
T Consensus 328 fyfkin~~pvflkg~nwip~s~f~dr~t~~~~~~LL~Sv~e~~MN~lRVW---GG-----Gv------YEsd~FY~lad~ 393 (867)
T KOG2230|consen 328 FYFKINDEPVFLKGTNWIPVSMFRDRENIAKTEFLLDSVAEVGMNMLRVW---GG-----GV------YESDYFYQLADS 393 (867)
T ss_pred eEEEEcCcEEEeecCCccChHHHHhhHHHHHHHHHHHHHHHhCcceEEEe---cC-----cc------ccchhHHHHhhh
Confidence 45889999999887764432 2333444557899999999999974 32 33 356699999999
Q ss_pred cCcEEEEecCcccccccCCCCCCccccccCCeeeecCChhHHHHHHHHHHHHHHHHhhccccccCCCcEEEecc--cccc
Q 046146 97 AGMYMLLRIGPFVAAEYNYGGVPVWLHYIPGSVFRSYSKPFMSYMQKFMTLIVDMMKKEKLFASQGGPIILAQV--ENEY 174 (829)
Q Consensus 97 ~GL~VilrpGPyicaEw~~GG~P~WL~~~p~~~~R~~~~~y~~~~~~~~~~l~~~i~~~~l~~~~gGpII~~Qi--ENEy 174 (829)
.||.|--.. =+.|| +=..|..|+.-++.=++.=+.+|+.| ..||.+-= |||-
T Consensus 394 lGilVWQD~-MFACA------------------lYPt~~eFl~sv~eEV~yn~~Rls~H-------pSviIfsgNNENEa 447 (867)
T KOG2230|consen 394 LGILVWQDM-MFACA------------------LYPTNDEFLSSVREEVRYNAMRLSHH-------PSVIIFSGNNENEA 447 (867)
T ss_pred ccceehhhh-HHHhh------------------cccCcHHHHHHHHHHHHHHHHhhccC-------CeEEEEeCCCccHH
Confidence 999664332 12232 23356788888888666666677644 45666543 5553
Q ss_pred ccchhhcc--------CcHHHH----HHHHHHHHhCCCccceeeeccC
Q 046146 175 QWYEQFYK--------GGKEYA----MWAASMAVSQNTGVPWIMCQQY 210 (829)
Q Consensus 175 g~~~~~y~--------~~~~y~----~~l~~~~~~~g~~vp~~~~~~~ 210 (829)
.-....|+ .-++|. +-++++.....-..|+++.-..
T Consensus 448 Al~~nWy~~sf~~~~~~~kdyvlly~~~i~el~l~~~~srPfi~SSPs 495 (867)
T KOG2230|consen 448 ALVQNWYGTSFERDRFESKDYVLLYANVIHELKLVSHSSRPFIVSSPS 495 (867)
T ss_pred HHHhhhhcccccccchhhhhhhHHHHHHHHHHHhhcCCCCCceecCCC
Confidence 21111122 223443 3355555555556788876543
No 74
>PRK12568 glycogen branching enzyme; Provisional
Probab=76.13 E-value=30 Score=43.00 Aligned_cols=59 Identities=19% Similarity=0.294 Sum_probs=41.7
Q ss_pred HHHHHHHcCCCEEEEc-ee-------CCcc-----cCCCCeeeeccchhHHHHHHHHHHcCcEEEEecCcccccc
Q 046146 51 LIQAAKEGGLNTIESY-VF-------WSGH-----ELSPGKYSFEGRYDLVKFVKTVQQAGMYMLLRIGPFVAAE 112 (829)
Q Consensus 51 ~l~k~ka~GlNtV~~y-v~-------Wn~h-----Ep~~G~~dF~g~~dl~~fl~~a~~~GL~VilrpGPyicaE 112 (829)
.|.-+|++|+|+|+.= |+ |.+- .|.+ .|....++.+|++.|+++||.|||-.=|-=+++
T Consensus 275 ll~ylk~LGvt~I~LmPi~e~~~~~~wGY~~~~~~a~~~---~~G~~~dfk~lV~~~H~~Gi~VIlD~V~nH~~~ 346 (730)
T PRK12568 275 LIPYVQQLGFTHIELLPITEHPFGGSWGYQPLGLYAPTA---RHGSPDGFAQFVDACHRAGIGVILDWVSAHFPD 346 (730)
T ss_pred HHHHHHHcCCCEEEECccccCCCCCCCCCCCCcCCccCc---ccCCHHHHHHHHHHHHHCCCEEEEEeccccCCc
Confidence 3577899999999853 32 4331 1211 455678999999999999999999865543433
No 75
>PF01229 Glyco_hydro_39: Glycosyl hydrolases family 39; InterPro: IPR000514 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 39 GH39 from CAZY comprises enzymes with several known activities; alpha-L-iduronidase (3.2.1.76 from EC); beta-xylosidase (3.2.1.37 from EC). The most highly conserved regions in these enzymes are located in their N-terminal sections. These contain a glutamic acid residue which, on the basis of similarities with other families of glycosyl hydrolases [], probably acts as the proton donor in their catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 2BS9_D 2BFG_E 1W91_B 1UHV_D 1PX8_A.
Probab=75.89 E-value=7.1 Score=46.07 Aligned_cols=68 Identities=21% Similarity=0.269 Sum_probs=42.0
Q ss_pred EEeeCCCCCcccHHHHHHHHH-HcCCCEEEEce-e---CCcc-c-CCCC--eeeeccchhHHHHHHHHHHcCcEEEEecC
Q 046146 36 ASIHYPRSVPAMWPELIQAAK-EGGLNTIESYV-F---WSGH-E-LSPG--KYSFEGRYDLVKFVKTVQQAGMYMLLRIG 106 (829)
Q Consensus 36 G~~Hy~R~~~~~W~d~l~k~k-a~GlNtV~~yv-~---Wn~h-E-p~~G--~~dF~g~~dl~~fl~~a~~~GL~VilrpG 106 (829)
|+-|.....++.|+..|+.++ ++||..|++-- | .... | ...| .|||+ .|+.++|...++||+-++..|
T Consensus 29 ~~g~a~~~l~~~~q~~l~~~~~~~gf~yvR~h~l~~ddm~~~~~~~~~~~~~Ynf~---~lD~i~D~l~~~g~~P~vel~ 105 (486)
T PF01229_consen 29 GSGRANLLLRADWQEQLRELQEELGFRYVRFHGLFSDDMMVYSESDEDGIPPYNFT---YLDQILDFLLENGLKPFVELG 105 (486)
T ss_dssp EES-GGGGGBHHHHHHHHHHHCCS--SEEEES-TTSTTTT-EEEEETTEEEEE--H---HHHHHHHHHHHCT-EEEEEE-
T ss_pred CCCchHHHhhHHHHHHHHHHHhccCceEEEEEeeccCchhhccccccCCCCcCChH---HHHHHHHHHHHcCCEEEEEEE
Confidence 444554567788999999986 77999887541 1 1111 1 1223 39999 999999999999999776665
No 76
>PF05913 DUF871: Bacterial protein of unknown function (DUF871); InterPro: IPR008589 This family consists of several conserved hypothetical proteins from bacteria and archaea. The function of this family is unknown though a number are annotated as outer surface proteins.; PDB: 2P0O_A 1X7F_A.
Probab=74.82 E-value=4.1 Score=46.19 Aligned_cols=73 Identities=22% Similarity=0.203 Sum_probs=47.6
Q ss_pred EEEEeeCCCCCcccHHHHHHHHHHcCCCEEEEceeCCcccCCCCeeeeccchhHHHHHHHHHHcCcEEEEecCcccccc
Q 046146 34 LSASIHYPRSVPAMWPELIQAAKEGGLNTIESYVFWSGHELSPGKYSFEGRYDLVKFVKTVQQAGMYMLLRIGPFVAAE 112 (829)
Q Consensus 34 ~sG~~Hy~R~~~~~W~d~l~k~ka~GlNtV~~yv~Wn~hEp~~G~~dF~g~~dl~~fl~~a~~~GL~VilrpGPyicaE 112 (829)
++=++.+...+.+.....|++|+++|+.. ||=++|.|+...=+.- ..+..++++|++.||.|++-..|=+...
T Consensus 2 lGiSvY~~~~~~~~~~~yi~~a~~~Gf~~----iFTSL~ipe~~~~~~~--~~~~~l~~~a~~~~~~v~~Disp~~l~~ 74 (357)
T PF05913_consen 2 LGISVYPGQSSFEENKAYIEKAAKYGFKR----IFTSLHIPEDDPEDYL--ERLKELLKLAKELGMEVIADISPKVLKK 74 (357)
T ss_dssp EEEEE-CCCS-HHHHHHHHHHHHCTTEEE----EEEEE---------HH--HHHHHHHHHHHHCT-EEEEEE-CCHHHT
T ss_pred cEEEEeCCCCCHHHHHHHHHHHHHCCCCE----EECCCCcCCCCHHHHH--HHHHHHHHHHHHCCCEEEEECCHHHHHH
Confidence 45566676677888999999999999954 5667899985432221 3788999999999999999998865433
No 77
>PLN02447 1,4-alpha-glucan-branching enzyme
Probab=74.20 E-value=5.5 Score=49.36 Aligned_cols=61 Identities=13% Similarity=0.181 Sum_probs=44.4
Q ss_pred ccHHHHHHHHHHcCCCEEEEc-ee-------CCcccCC---CCeeeeccchhHHHHHHHHHHcCcEEEEecCc
Q 046146 46 AMWPELIQAAKEGGLNTIESY-VF-------WSGHELS---PGKYSFEGRYDLVKFVKTVQQAGMYMLLRIGP 107 (829)
Q Consensus 46 ~~W~d~l~k~ka~GlNtV~~y-v~-------Wn~hEp~---~G~~dF~g~~dl~~fl~~a~~~GL~VilrpGP 107 (829)
+.|++.|..+|++|+|+|+.= |+ |.++-.. + .-.|....+|.+|++.|+++||.|||-.=|
T Consensus 251 ~~~~~~L~ylk~LG~t~I~LmPi~e~~~~~~wGY~~~~~fa~-~~~~Gtp~dlk~LVd~aH~~GI~VilDvV~ 322 (758)
T PLN02447 251 EFADDVLPRIKALGYNAVQLMAIQEHAYYGSFGYHVTNFFAV-SSRSGTPEDLKYLIDKAHSLGLRVLMDVVH 322 (758)
T ss_pred HHHHHHHHHHHHcCCCEEEECCccccCCCCCCCcCcccCccc-ccccCCHHHHHHHHHHHHHCCCEEEEEecc
Confidence 347889999999999999854 21 4433110 1 113556689999999999999999987544
No 78
>PRK09997 hydroxypyruvate isomerase; Provisional
Probab=73.34 E-value=42 Score=35.79 Aligned_cols=42 Identities=14% Similarity=0.228 Sum_probs=34.7
Q ss_pred HHHHHHHHHHcCCCEEEEceeCCcccCCCCeeeeccchhHHHHHHHHHHcCcEEEE
Q 046146 48 WPELIQAAKEGGLNTIESYVFWSGHELSPGKYSFEGRYDLVKFVKTVQQAGMYMLL 103 (829)
Q Consensus 48 W~d~l~k~ka~GlNtV~~yv~Wn~hEp~~G~~dF~g~~dl~~fl~~a~~~GL~Vil 103 (829)
++++|++++++|++.|++.. |. ..+++.+.++++++||.+..
T Consensus 17 l~~~l~~~a~~Gf~~VEl~~------~~--------~~~~~~~~~~l~~~gl~~~~ 58 (258)
T PRK09997 17 FLARFEKAAQCGFRGVEFMF------PY--------DYDIEELKQVLASNKLEHTL 58 (258)
T ss_pred HHHHHHHHHHhCCCEEEEcC------CC--------CCCHHHHHHHHHHcCCcEEE
Confidence 78899999999999999832 11 13799999999999999754
No 79
>PRK12313 glycogen branching enzyme; Provisional
Probab=70.95 E-value=7.3 Score=47.55 Aligned_cols=55 Identities=20% Similarity=0.284 Sum_probs=38.2
Q ss_pred HHHHHHcCCCEEEE-cee-------CCcccCC--CCeeeeccchhHHHHHHHHHHcCcEEEEecC
Q 046146 52 IQAAKEGGLNTIES-YVF-------WSGHELS--PGKYSFEGRYDLVKFVKTVQQAGMYMLLRIG 106 (829)
Q Consensus 52 l~k~ka~GlNtV~~-yv~-------Wn~hEp~--~G~~dF~g~~dl~~fl~~a~~~GL~VilrpG 106 (829)
|.-+|++|+|+|.. +|+ |.+.-.. .=.-.|.+..||.+|++.|+++||.|||-.=
T Consensus 177 l~yl~~LGv~~i~L~Pi~~~~~~~~~GY~~~~y~~i~~~~Gt~~d~k~lv~~~H~~Gi~VilD~V 241 (633)
T PRK12313 177 IPYVKEMGYTHVEFMPLMEHPLDGSWGYQLTGYFAPTSRYGTPEDFMYLVDALHQNGIGVILDWV 241 (633)
T ss_pred HHHHHHcCCCEEEeCchhcCCCCCCCCCCCcCcCcCCCCCCCHHHHHHHHHHHHHCCCEEEEEEC
Confidence 58889999999984 342 3221100 0011355678999999999999999999843
No 80
>TIGR02402 trehalose_TreZ malto-oligosyltrehalose trehalohydrolase. Members of this family are the trehalose biosynthetic enzyme malto-oligosyltrehalose trehalohydrolase, formally known as 4-alpha-D-{(1-4)-alpha-D-glucano}trehalose trehalohydrolase (EC 3.2.1.141). It is the TreZ protein of the TreYZ pathway for trehalose biosynthesis, and alternative to the OtsAB system.
Probab=70.40 E-value=7.6 Score=46.55 Aligned_cols=53 Identities=23% Similarity=0.380 Sum_probs=39.5
Q ss_pred HHHHHHHHcCCCEEEEc-ee-------CCcc-----cCCCCeeeeccchhHHHHHHHHHHcCcEEEEec
Q 046146 50 ELIQAAKEGGLNTIESY-VF-------WSGH-----ELSPGKYSFEGRYDLVKFVKTVQQAGMYMLLRI 105 (829)
Q Consensus 50 d~l~k~ka~GlNtV~~y-v~-------Wn~h-----Ep~~G~~dF~g~~dl~~fl~~a~~~GL~Vilrp 105 (829)
++|.-+|++|+|+|..- |+ |.+. .+.+ .|.+..+|.+|++.|+++||.|||-.
T Consensus 115 ~~l~yl~~LGv~~i~L~Pi~~~~~~~~~GY~~~~~~~~~~---~~G~~~e~k~lV~~aH~~Gi~VilD~ 180 (542)
T TIGR02402 115 EKLPYLADLGITAIELMPVAQFPGTRGWGYDGVLPYAPHN---AYGGPDDLKALVDAAHGLGLGVILDV 180 (542)
T ss_pred HhhHHHHHcCCCEEEeCccccCCCCCCCCCCccCcccccc---ccCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 46888999999999853 32 4332 1211 35567899999999999999999874
No 81
>cd06593 GH31_xylosidase_YicI YicI alpha-xylosidase is a glycosyl hydrolase family 31 (GH31) enzyme that catalyzes the release of an alpha-xylosyl residue from the non-reducing end of alpha-xyloside substrates such as alpha-xylosyl fluoride and isoprimeverose. YicI forms a homohexamer (a trimer of dimers). All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The YicI family corresponds to subgroup 4 in the Ernst et al classification of GH31 enzymes.
Probab=70.25 E-value=8.8 Score=42.34 Aligned_cols=68 Identities=15% Similarity=0.110 Sum_probs=50.1
Q ss_pred CcccHHHHHHHHHHcCCCEEEEceeCCcccCC-CCeeeeccch--hHHHHHHHHHHcCcEEEEecCccccc
Q 046146 44 VPAMWPELIQAAKEGGLNTIESYVFWSGHELS-PGKYSFEGRY--DLVKFVKTVQQAGMYMLLRIGPFVAA 111 (829)
Q Consensus 44 ~~~~W~d~l~k~ka~GlNtV~~yv~Wn~hEp~-~G~~dF~g~~--dl~~fl~~a~~~GL~VilrpGPyica 111 (829)
..+..++.++++|+.|+..=.+.+=..++... -+.|.|+-.+ |..++++.+++.|++|++..=|+|+.
T Consensus 22 ~~~~v~~~~~~~~~~~iP~d~~~lD~~w~~~~~~~~f~~d~~~FPd~~~~i~~l~~~G~~~~~~~~P~i~~ 92 (308)
T cd06593 22 DEEEVNEFADGMRERNLPCDVIHLDCFWMKEFQWCDFEFDPDRFPDPEGMLSRLKEKGFKVCLWINPYIAQ 92 (308)
T ss_pred CHHHHHHHHHHHHHcCCCeeEEEEecccccCCcceeeEECcccCCCHHHHHHHHHHCCCeEEEEecCCCCC
Confidence 66778899999999997765555544434322 2456655332 89999999999999999999888753
No 82
>cd06602 GH31_MGAM_SI_GAA This family includes the following three closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), and lysosomal acid alpha-glucosidase (GAA), also known as acid-maltase. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal domain found near the membrane-bound end, and a C-terminal luminal domain. Both of
Probab=69.72 E-value=86 Score=35.31 Aligned_cols=74 Identities=14% Similarity=0.175 Sum_probs=55.8
Q ss_pred eeCCCC---CcccHHHHHHHHHHcCCCEEEEceeCCcccCCCCeeeeccch--hH--HHHHHHHHHcCcEEEEecCcccc
Q 046146 38 IHYPRS---VPAMWPELIQAAKEGGLNTIESYVFWSGHELSPGKYSFEGRY--DL--VKFVKTVQQAGMYMLLRIGPFVA 110 (829)
Q Consensus 38 ~Hy~R~---~~~~W~d~l~k~ka~GlNtV~~yv~Wn~hEp~~G~~dF~g~~--dl--~~fl~~a~~~GL~VilrpGPyic 110 (829)
+|..|. ..+.-++.++++++.||..=.+.+=+.++.. -+.|.|+..+ |. .++++..++.|++|++..=|+|+
T Consensus 13 ~~~s~~~y~~~~~v~~~~~~~r~~~iP~d~i~lD~~~~~~-~~~f~~d~~~FPdp~~~~mi~~L~~~G~k~~~~i~P~v~ 91 (339)
T cd06602 13 FHLCRWGYKNVDEVKEVVENMRAAGIPLDVQWNDIDYMDR-RRDFTLDPVRFPGLKMPEFVDELHANGQHYVPILDPAIS 91 (339)
T ss_pred hHhcCCCCCCHHHHHHHHHHHHHhCCCcceEEECcccccC-ccceecccccCCCccHHHHHHHHHHCCCEEEEEEeCccc
Confidence 455564 4566889999999999976555554444433 4677766543 77 99999999999999999999998
Q ss_pred cc
Q 046146 111 AE 112 (829)
Q Consensus 111 aE 112 (829)
.+
T Consensus 92 ~~ 93 (339)
T cd06602 92 AN 93 (339)
T ss_pred cC
Confidence 64
No 83
>PF14587 Glyco_hydr_30_2: O-Glycosyl hydrolase family 30; PDB: 3CLW_B.
Probab=69.56 E-value=16 Score=41.80 Aligned_cols=138 Identities=14% Similarity=0.146 Sum_probs=71.4
Q ss_pred HHcCCCEEEEcee---------------CCcc---cCCCCeeeeccchhHHHHHHHHHHcCcEEEEecCcccccccCCCC
Q 046146 56 KEGGLNTIESYVF---------------WSGH---ELSPGKYSFEGRYDLVKFVKTVQQAGMYMLLRIGPFVAAEYNYGG 117 (829)
Q Consensus 56 ka~GlNtV~~yv~---------------Wn~h---Ep~~G~~dF~g~~dl~~fl~~a~~~GL~VilrpGPyicaEw~~GG 117 (829)
|-+|||.++.-|= |-.- .+..|.|||+....=..||++|++.|...++-+- =-
T Consensus 57 ~GlGLSI~RyNIGgGs~~~~d~~~i~~~~rr~e~f~~~dg~yDW~~D~gQrwfL~~Ak~rGV~~f~aFS---------NS 127 (384)
T PF14587_consen 57 KGLGLSIWRYNIGGGSAEQGDSSGIRDPWRRAESFLPADGSYDWDADAGQRWFLKAAKERGVNIFEAFS---------NS 127 (384)
T ss_dssp -S---S-EEEE---STTTTTTSS--SSSTT----SB-TTS-B-TTSSHHHHHHHHHHHHTT---EEEE----------SS
T ss_pred CCceeeeeeeccccCCcccccCccCCCcccCCccccCCCCCcCCCCCHHHHHHHHHHHHcCCCeEEEee---------cC
Confidence 5689999887663 3222 2457999999877788899999999999887652 23
Q ss_pred CCccccccCCe----eeecC-ChhHHHHHHHHHHHHHHHHhhccccccCCCcEEEeccccccccchhhcc----------
Q 046146 118 VPVWLHYIPGS----VFRSY-SKPFMSYMQKFMTLIVDMMKKEKLFASQGGPIILAQVENEYQWYEQFYK---------- 182 (829)
Q Consensus 118 ~P~WL~~~p~~----~~R~~-~~~y~~~~~~~~~~l~~~i~~~~l~~~~gGpII~~QiENEyg~~~~~y~---------- 182 (829)
.|.|+++.-.. ...++ -+...++-..|+..++++++++.+ +|=-+=.=||.... +..+
T Consensus 128 PP~~MT~NG~~~g~~~~~~NLk~d~y~~FA~YLa~Vv~~~~~~GI------~f~~IsP~NEP~~~-W~~~~QEG~~~~~~ 200 (384)
T PF14587_consen 128 PPWWMTKNGSASGGDDGSDNLKPDNYDAFADYLADVVKHYKKWGI------NFDYISPFNEPQWN-WAGGSQEGCHFTNE 200 (384)
T ss_dssp S-GGGSSSSSSB-S-SSS-SS-TT-HHHHHHHHHHHHHHHHCTT--------EEEEE--S-TTS--GG--SS-B----HH
T ss_pred CCHHHhcCCCCCCCCccccccChhHHHHHHHHHHHHHHHHHhcCC------ccceeCCcCCCCCC-CCCCCcCCCCCCHH
Confidence 78888762211 00111 234567777888888888864322 33222233886531 1111
Q ss_pred CcHHHHHHHHHHHHhCCCccceeeecc
Q 046146 183 GGKEYAMWAASMAVSQNTGVPWIMCQQ 209 (829)
Q Consensus 183 ~~~~y~~~l~~~~~~~g~~vp~~~~~~ 209 (829)
...+.++.|...+++.|+..-+..|+.
T Consensus 201 e~a~vI~~L~~~L~~~GL~t~I~~~Ea 227 (384)
T PF14587_consen 201 EQADVIRALDKALKKRGLSTKISACEA 227 (384)
T ss_dssp HHHHHHHHHHHHHHHHT-S-EEEEEEE
T ss_pred HHHHHHHHHHHHHHhcCCCceEEecch
Confidence 246778889999999998866555544
No 84
>PRK12677 xylose isomerase; Provisional
Probab=69.41 E-value=74 Score=36.58 Aligned_cols=89 Identities=13% Similarity=0.135 Sum_probs=53.6
Q ss_pred cHHHHHHHHHHcCCCEEEEceeCCcccCCCCeeeec---cchhHHHHHHHHHHcCcEEE-EecCcccccccCCCCCCccc
Q 046146 47 MWPELIQAAKEGGLNTIESYVFWSGHELSPGKYSFE---GRYDLVKFVKTVQQAGMYML-LRIGPFVAAEYNYGGVPVWL 122 (829)
Q Consensus 47 ~W~d~l~k~ka~GlNtV~~yv~Wn~hEp~~G~~dF~---g~~dl~~fl~~a~~~GL~Vi-lrpGPyicaEw~~GG~P~WL 122 (829)
.+.+++++++++|+..|+... +..--|+.+ -...+.++.+++++.||.|. +-|.-|-...+..|
T Consensus 32 ~~~E~v~~~a~~Gf~gVElh~------~~l~p~~~~~~~~~~~~~~lk~~l~~~GL~v~~v~~n~f~~p~~~~g------ 99 (384)
T PRK12677 32 DPVEAVHKLAELGAYGVTFHD------DDLVPFGATDAERDRIIKRFKKALDETGLVVPMVTTNLFTHPVFKDG------ 99 (384)
T ss_pred CHHHHHHHHHHhCCCEEEecc------cccCCCCCChhhhHHHHHHHHHHHHHcCCeeEEEecCCCCCccccCC------
Confidence 478999999999999998841 111111111 11358899999999999976 44432111112222
Q ss_pred cccCCeeeecCChhHHHHHHHHHHHHHHHHh
Q 046146 123 HYIPGSVFRSYSKPFMSYMQKFMTLIVDMMK 153 (829)
Q Consensus 123 ~~~p~~~~R~~~~~y~~~~~~~~~~l~~~i~ 153 (829)
.+-+.|+.-++...+.+.+.++.-+
T Consensus 100 ------~lts~d~~~R~~Ai~~~~r~IdlA~ 124 (384)
T PRK12677 100 ------AFTSNDRDVRRYALRKVLRNIDLAA 124 (384)
T ss_pred ------cCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 1345566666666665666555554
No 85
>TIGR02403 trehalose_treC alpha,alpha-phosphotrehalase. Trehalose is a glucose disaccharide that serves in many biological systems as a compatible solute for protection against hyperosmotic and thermal stress. This family describes trehalose-6-phosphate hydrolase, product of the treC (or treA) gene, which is often found together with a trehalose uptake transporter and a trehalose operon repressor.
Probab=69.03 E-value=7.2 Score=46.72 Aligned_cols=58 Identities=17% Similarity=0.188 Sum_probs=41.6
Q ss_pred HHHHHHHHHHcCCCEEEEc-eeCCcccCCCCeee----------eccchhHHHHHHHHHHcCcEEEEecCc
Q 046146 48 WPELIQAAKEGGLNTIESY-VFWSGHELSPGKYS----------FEGRYDLVKFVKTVQQAGMYMLLRIGP 107 (829)
Q Consensus 48 W~d~l~k~ka~GlNtV~~y-v~Wn~hEp~~G~~d----------F~g~~dl~~fl~~a~~~GL~VilrpGP 107 (829)
+.++|.-+|++|+|+|-+- ++-+- +. ...|+ |....||.++++.|+++||+|||-.=|
T Consensus 29 i~~~l~yl~~lG~~~i~l~Pi~~~~-~~-~~gY~~~d~~~id~~~Gt~~~~~~lv~~ah~~gi~vilD~v~ 97 (543)
T TIGR02403 29 IIEKLDYLKKLGVDYIWLNPFYVSP-QK-DNGYDVSDYYAINPLFGTMADFEELVSEAKKRNIKIMLDMVF 97 (543)
T ss_pred HHHhHHHHHHcCCCEEEECCcccCC-CC-CCCCCccccCccCcccCCHHHHHHHHHHHHHCCCEEEEEECc
Confidence 6678889999999999765 33211 10 01222 445679999999999999999988644
No 86
>PF13199 Glyco_hydro_66: Glycosyl hydrolase family 66; PDB: 3VMO_A 3VMN_A 3VMP_A.
Probab=66.79 E-value=1.1e+02 Score=37.05 Aligned_cols=80 Identities=18% Similarity=0.291 Sum_probs=49.3
Q ss_pred cccHHHHHHHHHHcCCCEEEEc-eeCCcccCCCCee--------eeccc----hhHHHHHHHHHHcCcEEEEecCccccc
Q 046146 45 PAMWPELIQAAKEGGLNTIESY-VFWSGHELSPGKY--------SFEGR----YDLVKFVKTVQQAGMYMLLRIGPFVAA 111 (829)
Q Consensus 45 ~~~W~d~l~k~ka~GlNtV~~y-v~Wn~hEp~~G~~--------dF~g~----~dl~~fl~~a~~~GL~VilrpGPyica 111 (829)
++.=+..|..|+...+|.|+.| ..|.+|.|-|+.= |+.++ .-+...|+.|++.|+.++.=--=|-.-
T Consensus 117 ~~~~~~~i~~L~~yHIN~~QFYDW~~rH~~Pl~~~~~~~~~~w~D~~~r~i~~~~Vk~yI~~ah~~Gmkam~Ynmiyaa~ 196 (559)
T PF13199_consen 117 AEDIEAEIDQLNRYHINGLQFYDWMYRHHKPLPGTNGQPDQTWTDWANRQISTSTVKDYINAAHKYGMKAMAYNMIYAAN 196 (559)
T ss_dssp HHHHHHHHHHHHHTT--EEEETS--SBTTB-S-SSS-EEE-TT-TTT--EEEHHHHHHHHHHHHHTT-EEEEEEESSEEE
T ss_pred chhHHHHHHHHHhhCcCeEEEEeeccccCCcCCCCCCchhhhhhhhcCCEehHHHHHHHHHHHHHcCcceehhHhhhccc
Confidence 3455778999999999999999 8899999987543 22332 368899999999999988543333222
Q ss_pred cc--CCCCCCccccc
Q 046146 112 EY--NYGGVPVWLHY 124 (829)
Q Consensus 112 Ew--~~GG~P~WL~~ 124 (829)
+. ..|=.|.|-+-
T Consensus 197 ~~~~~~gv~~eW~ly 211 (559)
T PF13199_consen 197 NNYEEDGVSPEWGLY 211 (559)
T ss_dssp TT--S--SS-GGBEE
T ss_pred cCcccccCCchhhhh
Confidence 22 35667889763
No 87
>PRK14705 glycogen branching enzyme; Provisional
Probab=66.75 E-value=65 Score=42.42 Aligned_cols=55 Identities=24% Similarity=0.275 Sum_probs=38.6
Q ss_pred HHHHHHHcCCCEEEEc-ee-------CCcccC--CCCeeeeccchhHHHHHHHHHHcCcEEEEec
Q 046146 51 LIQAAKEGGLNTIESY-VF-------WSGHEL--SPGKYSFEGRYDLVKFVKTVQQAGMYMLLRI 105 (829)
Q Consensus 51 ~l~k~ka~GlNtV~~y-v~-------Wn~hEp--~~G~~dF~g~~dl~~fl~~a~~~GL~Vilrp 105 (829)
.|.-+|++|+|+|+.= |+ |.+--. ..=.=.|....||.+|++.|+++||.|||--
T Consensus 771 lldYlk~LGvt~IeLmPv~e~p~~~swGY~~~~y~ap~~ryGt~~dfk~lVd~~H~~GI~VILD~ 835 (1224)
T PRK14705 771 LVDYVKWLGFTHVEFMPVAEHPFGGSWGYQVTSYFAPTSRFGHPDEFRFLVDSLHQAGIGVLLDW 835 (1224)
T ss_pred HHHHHHHhCCCEEEECccccCCCCCCCCCCccccCCcCcccCCHHHHHHHHHHHHHCCCEEEEEe
Confidence 3678899999999853 32 533110 0001135567899999999999999999874
No 88
>KOG0496 consensus Beta-galactosidase [Carbohydrate transport and metabolism]
Probab=65.77 E-value=1.8 Score=51.85 Aligned_cols=79 Identities=10% Similarity=0.052 Sum_probs=61.4
Q ss_pred cccccccccCCCCCCCCCCCcEEEeCCCCCcEEEEEeeecCCCCCCCCCcCcCceeCCChhhHHHhhcCCCCceEEEeCC
Q 046146 728 SICGLVAADEDGNESSNSNATIHLQCPKNRSISTVKFASFGTPTGKCGSFRMGDCHDPNSTSFVEKVCLNKNKCAIELTE 807 (829)
Q Consensus 728 ~iC~~vsE~~~~~~~~~~~~~~~L~C~~g~~I~~I~~A~yGr~~~~C~~~~~~~C~~~~s~~~V~~~C~Gk~~C~v~a~~ 807 (829)
.+|.+.-++|.-. -.++.=-|.++.++..|.+|.||..+++|+.|-..+|.++.+...+.+.|..+..|+|..-.
T Consensus 312 gl~~~pk~ghlk~-----~hts~d~~ep~lv~gd~~~~kyg~~~~~C~~Fl~n~~~~~~~~v~f~~~~y~~~~~slsilp 386 (649)
T KOG0496|consen 312 GLLRQPKYGHLKP-----LHTSYDYCEPALVAGDITTAKYGNLREACAAFLSNNNGAPAAPVPFNKPKYRLPPWSLSILP 386 (649)
T ss_pred hhhcCCCcccccc-----chhhhhhcCccccccCcccccccchhhHHHHHHhcCCCCCCCccccCCCccccCceeEEech
Confidence 5666666666111 11222245678888888999999999999999999999999999999999999999999876
Q ss_pred CCCC
Q 046146 808 TNFN 811 (829)
Q Consensus 808 ~~Fg 811 (829)
+.++
T Consensus 387 dck~ 390 (649)
T KOG0496|consen 387 DCKT 390 (649)
T ss_pred hhcc
Confidence 6543
No 89
>PRK10933 trehalose-6-phosphate hydrolase; Provisional
Probab=65.74 E-value=12 Score=45.02 Aligned_cols=57 Identities=14% Similarity=0.195 Sum_probs=41.5
Q ss_pred HHHHHHHHHHcCCCEEEEc-eeCCcccCCC-Cee----------eeccchhHHHHHHHHHHcCcEEEEecCc
Q 046146 48 WPELIQAAKEGGLNTIESY-VFWSGHELSP-GKY----------SFEGRYDLVKFVKTVQQAGMYMLLRIGP 107 (829)
Q Consensus 48 W~d~l~k~ka~GlNtV~~y-v~Wn~hEp~~-G~~----------dF~g~~dl~~fl~~a~~~GL~VilrpGP 107 (829)
+.++|.-+|++|+++|-+- ++-+ |.. ..| +|....||.++++.|+++||+|||-.=+
T Consensus 35 i~~~ldyl~~lGv~~i~l~P~~~~---~~~~~gY~~~d~~~id~~~Gt~~d~~~lv~~~h~~gi~vilD~V~ 103 (551)
T PRK10933 35 VTQRLDYLQKLGVDAIWLTPFYVS---PQVDNGYDVANYTAIDPTYGTLDDFDELVAQAKSRGIRIILDMVF 103 (551)
T ss_pred HHHhhHHHHhCCCCEEEECCCCCC---CCCCCCCCcccCCCcCcccCCHHHHHHHHHHHHHCCCEEEEEECC
Confidence 5578899999999999764 4321 111 122 2445679999999999999999987643
No 90
>PRK09505 malS alpha-amylase; Reviewed
Probab=64.00 E-value=14 Score=45.64 Aligned_cols=60 Identities=17% Similarity=0.133 Sum_probs=42.7
Q ss_pred HHHHHHHHHHcCCCEEEEc-eeCCcccC-----------------CCC-----eeeeccchhHHHHHHHHHHcCcEEEEe
Q 046146 48 WPELIQAAKEGGLNTIESY-VFWSGHEL-----------------SPG-----KYSFEGRYDLVKFVKTVQQAGMYMLLR 104 (829)
Q Consensus 48 W~d~l~k~ka~GlNtV~~y-v~Wn~hEp-----------------~~G-----~~dF~g~~dl~~fl~~a~~~GL~Vilr 104 (829)
+.+.|.-+|++|+|+|-+- ++=+.|.. -+- .-.|....+|.++++.|+++||+|||-
T Consensus 232 i~~kLdyl~~LGv~aIwlsPi~~~~~~~~~~g~~g~~~~~~yhgY~~~D~~~id~~~Gt~~dfk~Lv~~aH~~Gi~VilD 311 (683)
T PRK09505 232 LTEKLDYLQQLGVNALWISSPLEQIHGWVGGGTKGDFPHYAYHGYYTLDWTKLDANMGTEADLRTLVDEAHQRGIRILFD 311 (683)
T ss_pred HHHhhHHHHHcCCCEEEeCccccccccccccccccCCCcCCCCCCCccccccCCCCCCCHHHHHHHHHHHHHCCCEEEEE
Confidence 4577888999999999854 44333321 111 113455679999999999999999998
Q ss_pred cCc
Q 046146 105 IGP 107 (829)
Q Consensus 105 pGP 107 (829)
.=+
T Consensus 312 ~V~ 314 (683)
T PRK09505 312 VVM 314 (683)
T ss_pred ECc
Confidence 644
No 91
>smart00518 AP2Ec AP endonuclease family 2. These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites
Probab=63.61 E-value=1e+02 Score=32.95 Aligned_cols=101 Identities=10% Similarity=0.079 Sum_probs=63.7
Q ss_pred EEeeCCCCCcccHHHHHHHHHHcCCCEEEEceeCCcccCCCCe-eeeccchhHHHHHHHHHHcCcEEEEecCcccccccC
Q 046146 36 ASIHYPRSVPAMWPELIQAAKEGGLNTIESYVFWSGHELSPGK-YSFEGRYDLVKFVKTVQQAGMYMLLRIGPFVAAEYN 114 (829)
Q Consensus 36 G~~Hy~R~~~~~W~d~l~k~ka~GlNtV~~yv~Wn~hEp~~G~-~dF~g~~dl~~fl~~a~~~GL~VilrpGPyicaEw~ 114 (829)
|..+..+-+ -.+.|..+.++|++.|+... .+|..-. -+++ ..+++++.++++++||.+.+- +||.
T Consensus 3 g~~~~~~~~---~~~~~~~~~~~G~~~vel~~----~~~~~~~~~~~~-~~~~~~l~~~~~~~gl~ls~h-~p~~----- 68 (273)
T smart00518 3 GAHVSAAGG---LYKAFIEAVDIGARSFQLFL----GNPRSWKGVRLS-EETAEKFKEALKENNIDVSVH-APYL----- 68 (273)
T ss_pred eEEEcccCc---HhHHHHHHHHcCCCEEEEEC----CCCCCCCCCCCC-HHHHHHHHHHHHHcCCCEEEE-CCce-----
Confidence 444444433 34789999999999999953 2332110 0222 236889999999999986542 3431
Q ss_pred CCCCCccccccCCeeeecCChhHHHHHHHHHHHHHHHHhhccccccCCCcEEEec
Q 046146 115 YGGVPVWLHYIPGSVFRSYSKPFMSYMQKFMTLIVDMMKKEKLFASQGGPIILAQ 169 (829)
Q Consensus 115 ~GG~P~WL~~~p~~~~R~~~~~y~~~~~~~~~~l~~~i~~~~l~~~~gGpII~~Q 169 (829)
+.+.+.|+..+++..+++.+.++..+ .+ |.++|.+.
T Consensus 69 -------------~nl~s~d~~~r~~~~~~l~~~i~~A~--~l----Ga~~vv~h 104 (273)
T smart00518 69 -------------INLASPDKEKVEKSIERLIDEIKRCE--EL----GIKALVFH 104 (273)
T ss_pred -------------ecCCCCCHHHHHHHHHHHHHHHHHHH--Hc----CCCEEEEc
Confidence 12445677777777777887777765 23 66666654
No 92
>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains. Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.
Probab=63.29 E-value=25 Score=29.35 Aligned_cols=55 Identities=18% Similarity=0.135 Sum_probs=43.3
Q ss_pred cccHHHHHHHHHHcCCCEEEEceeCCcccCCCCeeeeccchhHHHHHHHHHHcCcEEEE
Q 046146 45 PAMWPELIQAAKEGGLNTIESYVFWSGHELSPGKYSFEGRYDLVKFVKTVQQAGMYMLL 103 (829)
Q Consensus 45 ~~~W~d~l~k~ka~GlNtV~~yv~Wn~hEp~~G~~dF~g~~dl~~fl~~a~~~GL~Vil 103 (829)
|..-.+.++.+.+.|+|..++|++= ++. ++.+.+.. .|.++..+..+++|..|.|
T Consensus 12 pG~La~v~~~l~~~~inI~~i~~~~--~~~-~~~~rl~~-~~~~~~~~~L~~~G~~v~~ 66 (66)
T cd04908 12 PGRLAAVTEILSEAGINIRALSIAD--TSE-FGILRLIV-SDPDKAKEALKEAGFAVKL 66 (66)
T ss_pred CChHHHHHHHHHHCCCCEEEEEEEe--cCC-CCEEEEEE-CCHHHHHHHHHHCCCEEEC
Confidence 4556788999999999999999833 333 58877765 5778999999999988754
No 93
>PF03659 Glyco_hydro_71: Glycosyl hydrolase family 71 ; InterPro: IPR005197 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of alpha-1,3-glucanases belonging to glycoside hydrolase family 71 (GH71 from CAZY).
Probab=62.49 E-value=29 Score=39.93 Aligned_cols=54 Identities=13% Similarity=0.244 Sum_probs=42.9
Q ss_pred CCcccHHHHHHHHHHcCCCEEEEceeCCcccCCCCeeeeccchhHHHHHHHHHHcCcEEEEec
Q 046146 43 SVPAMWPELIQAAKEGGLNTIESYVFWSGHELSPGKYSFEGRYDLVKFVKTVQQAGMYMLLRI 105 (829)
Q Consensus 43 ~~~~~W~d~l~k~ka~GlNtV~~yv~Wn~hEp~~G~~dF~g~~dl~~fl~~a~~~GL~Vilrp 105 (829)
...+.|+++++.+|++||+....-+- ....+.. ..|...++.|++.|++++|-+
T Consensus 14 yt~~dw~~di~~A~~~GIDgFaLNig------~~d~~~~---~~l~~a~~AA~~~gFKlf~Sf 67 (386)
T PF03659_consen 14 YTQEDWEADIRLAQAAGIDGFALNIG------SSDSWQP---DQLADAYQAAEAVGFKLFFSF 67 (386)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEecc------cCCcccH---HHHHHHHHHHHhcCCEEEEEe
Confidence 37888999999999999998877664 1222222 368888999999999999988
No 94
>TIGR01531 glyc_debranch glycogen debranching enzymye. glycogen debranching enzyme possesses two different catalytic activities; oligo-1,4--1,4-glucantransferase (EC 2.4.1.25) and amylo-1,6-glucosidase (EC 3.2.1.33). Site directed mutagenesis studies in S. cerevisiae indicate that the transferase and glucosidase activities are independent and located in different regions of the polypeptide chain. Proteins in this model belong to the larger alpha-amylase family. The model covers eukaryotic proteins with a seed composed of human, nematode and yeast sequences. Yeast seed sequence is well characterized. The model is quite rigorous; either query sequence yields large bit score or it fails to hit the model altogether. There doesn't appear to be any middle ground.
Probab=62.14 E-value=29 Score=45.75 Aligned_cols=110 Identities=21% Similarity=0.354 Sum_probs=65.5
Q ss_pred cEEECCEEeEEE---EEEeeCCCC--CcccHHHHHHHHHHcCCCEEEEc-ee-CCcccCC----CCeee----e----cc
Q 046146 23 SLIIHGRRKLFL---SASIHYPRS--VPAMWPELIQAAKEGGLNTIESY-VF-WSGHELS----PGKYS----F----EG 83 (829)
Q Consensus 23 ~~~idGkp~~~~---sG~~Hy~R~--~~~~W~d~l~k~ka~GlNtV~~y-v~-Wn~hEp~----~G~~d----F----~g 83 (829)
.+.|+|+.++.+ +=.-..+++ +-+.|++.|+.+|++|.|+|-.- ++ =.. ... .+.+. | .+
T Consensus 104 ~L~i~~~~~lPl~~i~iqTvlsK~mG~~~~w~~~L~~ik~lGyN~IhftPI~~~G~-SnS~Ysi~Dyl~idP~~~~~~~~ 182 (1464)
T TIGR01531 104 MLYINADKFLPLDSIALQTVLAKLLGPLSEWEPRLRVAKEKGYNMIHFTPLQELGG-SNSCYSLYDQLQLNQHFKSQKDG 182 (1464)
T ss_pred eeEECCCcccCcCceeeeeehhhhcCCHHHHHHHHHHHHHcCCCEEEeCCCccCCC-CCCCccccchhhcChhhcccCCc
Confidence 355566333332 222334554 44779999999999999998743 43 110 001 11221 3 35
Q ss_pred chhHHHHHHHHHHc-CcEEEEecCcccccccCCCCC-CccccccCCeeeecCChhHHH
Q 046146 84 RYDLVKFVKTVQQA-GMYMLLRIGPFVAAEYNYGGV-PVWLHYIPGSVFRSYSKPFMS 139 (829)
Q Consensus 84 ~~dl~~fl~~a~~~-GL~VilrpGPyicaEw~~GG~-P~WL~~~p~~~~R~~~~~y~~ 139 (829)
..|+.++++.|++. ||++|+-. =|+.=+- =.||.++|+.-.-..+.+||+
T Consensus 183 ~~d~~~lV~~~h~~~Gm~~ilDv------V~NHTa~ds~Wl~eHPEa~Yn~~~sP~L~ 234 (1464)
T TIGR01531 183 KNDVQALVEKLHRDWNVLSITDI------VFNHTANNSPWLLEHPEAAYNCITSPHLR 234 (1464)
T ss_pred HHHHHHHHHHHHHhcCCEEEEEe------eecccccCCHHHHhChHhhcCCCCCchhh
Confidence 67999999999996 99999875 2333333 258888877544444444444
No 95
>COG1306 Uncharacterized conserved protein [Function unknown]
Probab=61.95 E-value=14 Score=40.62 Aligned_cols=59 Identities=22% Similarity=0.277 Sum_probs=41.6
Q ss_pred CcccHHHHHHHHHHcCCCEEEEceeC---CcccCCC--------CeeeeccchhHHHHHHHHHHcCcEEEEec
Q 046146 44 VPAMWPELIQAAKEGGLNTIESYVFW---SGHELSP--------GKYSFEGRYDLVKFVKTVQQAGMYMLLRI 105 (829)
Q Consensus 44 ~~~~W~d~l~k~ka~GlNtV~~yv~W---n~hEp~~--------G~~dF~g~~dl~~fl~~a~~~GL~Vilrp 105 (829)
.+..-..+++.+|..|+|++-+=+-= ++.=|.. -+=.|- |+..||+.|+|.|||+|.|.
T Consensus 75 ~kk~~de~fk~ikdn~~Na~ViD~Kdd~G~lty~s~d~~~~~~~sv~~f~---Di~~~iKkaKe~giY~IARi 144 (400)
T COG1306 75 LKKRLDELFKLIKDNNINAFVIDVKDDYGELTYPSSDEINKYTKSVNKFK---DIEPVIKKAKENGIYAIARI 144 (400)
T ss_pred ChhHHHHHHHHHHhCCCCEEEEEecCCCccEeccccchhhhhhhcccccc---ccHHHHHHHHhcCeEEEEEE
Confidence 45666889999999999998644321 1111111 122244 99999999999999999997
No 96
>PLN02960 alpha-amylase
Probab=61.16 E-value=17 Score=45.79 Aligned_cols=56 Identities=20% Similarity=0.277 Sum_probs=39.7
Q ss_pred HHHHHHHHcCCCEEEEc-ee-------CCcccCC--CCeeeeccchhHHHHHHHHHHcCcEEEEec
Q 046146 50 ELIQAAKEGGLNTIESY-VF-------WSGHELS--PGKYSFEGRYDLVKFVKTVQQAGMYMLLRI 105 (829)
Q Consensus 50 d~l~k~ka~GlNtV~~y-v~-------Wn~hEp~--~G~~dF~g~~dl~~fl~~a~~~GL~Vilrp 105 (829)
++|.-+|++|+|+|+.= |+ |.+.-.- .=.-.|....+|.+|++.|+++||.|||-.
T Consensus 421 ~~LdYLk~LGvt~IeLmPv~e~~~~~swGY~~~~yfa~~~~yGtp~dfk~LVd~aH~~GI~VILDv 486 (897)
T PLN02960 421 KVLPHVKKAGYNAIQLIGVQEHKDYSSVGYKVTNFFAVSSRFGTPDDFKRLVDEAHGLGLLVFLDI 486 (897)
T ss_pred HHHHHHHHcCCCEEEECCcccCCCCCCCCCCcccCCCcccccCCHHHHHHHHHHHHHCCCEEEEEe
Confidence 45888999999999964 33 4432110 001134456799999999999999999985
No 97
>PF02679 ComA: (2R)-phospho-3-sulfolactate synthase (ComA); InterPro: IPR003830 Methanogenic archaea produce methane via the anaerobic reduction of acetate or single carbon compounds []. Coenzyme M (CoM; 2-mercaptoethanesulphonic acid) serves as the terminal methyl carrier for this process. Previously thought to be unique to methanogenic archaea, CoM has also been found in methylotrophic bacteria. Biosynthesis of CoM begins with the Michael addition of sulphite to phosphoenolpyruvate, forming 2-phospho-3-sulpholactate (PSL). This reaction is catalyzed by members of this family, PSL synthase (ComA) []. Subsequently, PSL is dephosphorylated by phosphosulpholactate phosphatase (ComB) to form 3-sulpholactate [], which is then converted to 3-sulphopyruvate by L-sulpholactate dehydrogenase (ComC; 1.1.1.272 from EC) []. Sulphopyruvate decarboxylase (ComDE; 4.1.1.79 from EC) converts 3-sulphopyruvate to sulphoacetaldehyde []. Reductive thiolation of sulphoacetaldehyde is the final step.; GO: 0019295 coenzyme M biosynthetic process; PDB: 1U83_A 1QWG_A.
Probab=60.78 E-value=13 Score=39.91 Aligned_cols=52 Identities=19% Similarity=0.443 Sum_probs=38.8
Q ss_pred cccHHHHHHHHHHcCCCEEEEceeCCcccCCCCeeeeccchhHHHHHHHHHHcCcEEEEecC
Q 046146 45 PAMWPELIQAAKEGGLNTIESYVFWSGHELSPGKYSFEGRYDLVKFVKTVQQAGMYMLLRIG 106 (829)
Q Consensus 45 ~~~W~d~l~k~ka~GlNtV~~yv~Wn~hEp~~G~~dF~g~~dl~~fl~~a~~~GL~VilrpG 106 (829)
+...++-|+.+|++||++|++- .|..+.+ ..+..++|+.|+++|+.|+--.|
T Consensus 83 q~~~~~yl~~~k~lGf~~IEiS---------dGti~l~-~~~r~~~I~~~~~~Gf~v~~EvG 134 (244)
T PF02679_consen 83 QGKFDEYLEECKELGFDAIEIS---------DGTIDLP-EEERLRLIRKAKEEGFKVLSEVG 134 (244)
T ss_dssp TT-HHHHHHHHHHCT-SEEEE-----------SSS----HHHHHHHHHHHCCTTSEEEEEES
T ss_pred cChHHHHHHHHHHcCCCEEEec---------CCceeCC-HHHHHHHHHHHHHCCCEEeeccc
Confidence 6677899999999999999874 3444443 24778999999999999999887
No 98
>cd06595 GH31_xylosidase_XylS-like This family represents an uncharacterized glycosyl hydrolase family 31 (GH31) enzyme found in bacteria and eukaryotes that is related to the XylS xylosidase of Sulfolobus solfataricus. Alpha-xylosidases catalyze the release of an alpha-xylose residue from the non-reducing end of alpha-xyloside substrates. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=60.70 E-value=76 Score=34.87 Aligned_cols=72 Identities=15% Similarity=0.153 Sum_probs=50.4
Q ss_pred eeCCCC---CcccHHHHHHHHHHcCCCEEEEceeCCcccC--------CCCeeeeccc--hhHHHHHHHHHHcCcEEEEe
Q 046146 38 IHYPRS---VPAMWPELIQAAKEGGLNTIESYVFWSGHEL--------SPGKYSFEGR--YDLVKFVKTVQQAGMYMLLR 104 (829)
Q Consensus 38 ~Hy~R~---~~~~W~d~l~k~ka~GlNtV~~yv~Wn~hEp--------~~G~~dF~g~--~dl~~fl~~a~~~GL~Vilr 104 (829)
+|..|. +.+.-++.++++|+.||-.=.+++=..+|.- .-+.|.|+-. -|..++++..++.|++|++.
T Consensus 14 ~~qsr~~y~s~~ev~~v~~~~r~~~iP~D~i~lD~dw~~~~~~~~~~~~~~~ft~d~~~FPdp~~mi~~Lh~~G~k~v~~ 93 (292)
T cd06595 14 NWWSRYWPYSDEEYLALMDRFKKHNIPLDVLVIDMDWHVTDIPSKYGSGWTGYSWNRKLFPDPEKLLQDLHDRGLKVTLN 93 (292)
T ss_pred hHhhCCcCCCHHHHHHHHHHHHHhCCCccEEEEecccccccccccccCCcceeEEChhcCCCHHHHHHHHHHCCCEEEEE
Confidence 444552 5566788999999999976555553333331 2356777643 39999999999999999988
Q ss_pred cCccc
Q 046146 105 IGPFV 109 (829)
Q Consensus 105 pGPyi 109 (829)
.=|+|
T Consensus 94 v~P~~ 98 (292)
T cd06595 94 LHPAD 98 (292)
T ss_pred eCCCc
Confidence 75543
No 99
>TIGR02104 pulA_typeI pullulanase, type I. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family consists of pullulanases related to the subfamilies described in TIGR02102 and TIGR02103 but having a different domain architecture with shorter sequences. Members are called type I pullulanases.
Probab=60.69 E-value=15 Score=44.67 Aligned_cols=57 Identities=19% Similarity=0.372 Sum_probs=38.3
Q ss_pred HHHHHHHHcCCCEEEEc-ee---------------CCccc-----CCCCeee----ec--cchhHHHHHHHHHHcCcEEE
Q 046146 50 ELIQAAKEGGLNTIESY-VF---------------WSGHE-----LSPGKYS----FE--GRYDLVKFVKTVQQAGMYML 102 (829)
Q Consensus 50 d~l~k~ka~GlNtV~~y-v~---------------Wn~hE-----p~~G~~d----F~--g~~dl~~fl~~a~~~GL~Vi 102 (829)
+.|.-+|++|+|+|+.= |+ |.+.- |. +.|- |. ...+|.+|++.|+++||.||
T Consensus 168 ~~LdyL~~LGvt~I~L~Pi~~~~~~~~~~~~~~~~wGY~~~~y~~~~-~~y~~~p~~~~~~~~efk~lV~~~H~~Gi~Vi 246 (605)
T TIGR02104 168 TGLDYLKELGVTHVQLLPVFDFAGVDEEDPNNAYNWGYDPLNYNVPE-GSYSTNPYDPATRIRELKQMIQALHENGIRVI 246 (605)
T ss_pred hHHHHHHHcCCCEEEeCCcccccccccccCCCCCCCCCCCccCCCcC-hhhhcCCCccchHHHHHHHHHHHHHHCCCEEE
Confidence 45899999999999853 32 33321 11 0111 11 13689999999999999999
Q ss_pred EecCc
Q 046146 103 LRIGP 107 (829)
Q Consensus 103 lrpGP 107 (829)
|-.=+
T Consensus 247 lDvV~ 251 (605)
T TIGR02104 247 MDVVY 251 (605)
T ss_pred EEEEc
Confidence 98533
No 100
>TIGR02456 treS_nterm trehalose synthase. Trehalose synthase interconverts maltose and alpha, alpha-trehalose by transglucosylation. This is one of at least three mechanisms for biosynthesis of trehalose, an important and widespread compatible solute. However, it is not driven by phosphate activation of sugars and its physiological role may tend toward trehalose degradation. This view is accentuated by numerous examples of fusion to a probable maltokinase domain. The sequence region described by this model is found both as the whole of a trehalose synthase and as the N-terminal region of a larger fusion protein that includes trehalose synthase activity. Several of these fused trehalose synthases have a domain homologous to proteins with maltokinase activity from Actinoplanes missouriensis and Streptomyces coelicolor (PubMed:15378530).
Probab=60.53 E-value=12 Score=44.74 Aligned_cols=56 Identities=18% Similarity=0.249 Sum_probs=40.8
Q ss_pred cHHHHHHHHHHcCCCEEEEc-eeCCcccCC-CCee----------eeccchhHHHHHHHHHHcCcEEEEec
Q 046146 47 MWPELIQAAKEGGLNTIESY-VFWSGHELS-PGKY----------SFEGRYDLVKFVKTVQQAGMYMLLRI 105 (829)
Q Consensus 47 ~W~d~l~k~ka~GlNtV~~y-v~Wn~hEp~-~G~~----------dF~g~~dl~~fl~~a~~~GL~Vilrp 105 (829)
-+.+.|.-+|++|+|+|-.- |+ .. +. ...| .|....|+.++++.|+++||+|||-.
T Consensus 29 gi~~~Ldyl~~LGv~~i~L~Pi~-~~--~~~~~gY~~~dy~~vd~~~Gt~~df~~Lv~~ah~~Gi~vilD~ 96 (539)
T TIGR02456 29 GLTSKLDYLKWLGVDALWLLPFF-QS--PLRDDGYDVSDYRAILPEFGTIDDFKDFVDEAHARGMRVIIDL 96 (539)
T ss_pred HHHHhHHHHHHCCCCEEEECCCc-CC--CCCCCCCCcccccccChhhCCHHHHHHHHHHHHHCCCEEEEEe
Confidence 36778999999999999765 33 11 11 1112 24456799999999999999999864
No 101
>TIGR02401 trehalose_TreY malto-oligosyltrehalose synthase. This enzyme, formally named (1-4)-alpha-D-glucan 1-alpha-D-glucosylmutase, is the TreY enzyme of the TreYZ pathway of trehalose biosynthesis, an alternative to the OtsAB pathway. Trehalose may be incorporated into more complex compounds but is best known as compatible solute. It is one of the most effective osmoprotectants, and unlike the various betaines does not require nitrogen for its synthesis.
Probab=59.23 E-value=18 Score=45.29 Aligned_cols=65 Identities=14% Similarity=0.152 Sum_probs=45.8
Q ss_pred cccHHHHHHHHHHcCCCEEEEceeCCc-----ccCCC---C--eeeeccchhHHHHHHHHHHcCcEEEEecCccc
Q 046146 45 PAMWPELIQAAKEGGLNTIESYVFWSG-----HELSP---G--KYSFEGRYDLVKFVKTVQQAGMYMLLRIGPFV 109 (829)
Q Consensus 45 ~~~W~d~l~k~ka~GlNtV~~yv~Wn~-----hEp~~---G--~~dF~g~~dl~~fl~~a~~~GL~VilrpGPyi 109 (829)
-+-|.+.|.-++++|+++|.+-=++.. |--.. . .-.|.+..++.+|++.|+++||.|||-.=|-=
T Consensus 15 f~~~~~~L~YL~~LGv~~V~lsPi~~a~~gs~hGYdv~D~~~idp~lGt~edf~~Lv~aah~~Gm~vIlDiVpNH 89 (825)
T TIGR02401 15 FDDAAALLPYLKSLGVSHLYLSPILTAVPGSTHGYDVVDHSEINPELGGEEGLRRLSEAARARGLGLIVDIVPNH 89 (825)
T ss_pred HHHHHHhhHHHHHcCCCEEEeCcCccCCCCCCCCCCCCCCCCcCCCCCCHHHHHHHHHHHHHCCCEEEEEecccc
Confidence 345889999999999999976533321 11100 0 11355788999999999999999999865543
No 102
>PF14683 CBM-like: Polysaccharide lyase family 4, domain III; PDB: 1NKG_A 2XHN_B 3NJX_A 3NJV_A.
Probab=59.10 E-value=9 Score=38.83 Aligned_cols=62 Identities=21% Similarity=0.249 Sum_probs=27.1
Q ss_pred CccEEEEEcCeecceeeccCCCCCCCcccccccCCCcccccccCCCCCcccceeecCcccccccccEEEEEeecC
Q 046146 639 MGKGQAWLNGEPIGRYWDKRSSIDDHCVQECDYRGTFNQQKCLTGSGEPTQRWYHVPRSWFKPSGNILVIFEEKG 713 (829)
Q Consensus 639 ~gKG~vwVNG~nlGRYW~~~~~~~~g~~~~c~~~g~~~~~~~~~~~~gPqqtlYhVP~~~Lk~g~N~lvvfEe~g 713 (829)
-++=+|.||| ..+..+....+ .++|.+|+.- -.+-.+.--+-||+.+|++|.|+|.|=-..|
T Consensus 92 ~~~~~V~vNg-~~~~~~~~~~~-----~d~~~~r~g~-------~~G~~~~~~~~ipa~~L~~G~Nti~lt~~~g 153 (167)
T PF14683_consen 92 GGRLQVSVNG-WSGPFPSAPFG-----NDNAIYRSGI-------HRGNYRLYEFDIPASLLKAGENTITLTVPSG 153 (167)
T ss_dssp T-EEEEEETT-EE----------------S--GGGT----------S---EEEEEE-TTSS-SEEEEEEEEEE-S
T ss_pred CCCEEEEEcC-ccCCccccccC-----CCCceeeCce-------ecccEEEEEEEEcHHHEEeccEEEEEEEccC
Confidence 3555899999 66766531112 1244444432 1122344445699999999999987643333
No 103
>COG0296 GlgB 1,4-alpha-glucan branching enzyme [Carbohydrate transport and metabolism]
Probab=59.08 E-value=18 Score=44.03 Aligned_cols=52 Identities=31% Similarity=0.423 Sum_probs=39.9
Q ss_pred HHHHHHHHHcCCCEEEEc-ee-------CCcccCCCCee------eeccchhHHHHHHHHHHcCcEEEEe
Q 046146 49 PELIQAAKEGGLNTIESY-VF-------WSGHELSPGKY------SFEGRYDLVKFVKTVQQAGMYMLLR 104 (829)
Q Consensus 49 ~d~l~k~ka~GlNtV~~y-v~-------Wn~hEp~~G~~------dF~g~~dl~~fl~~a~~~GL~Vilr 104 (829)
.+.|.-+|+||+++||.= |. |.+ .|+. .|....||.+||+.|+++||-|||-
T Consensus 168 ~~llpYl~elG~T~IELMPv~e~p~~~sWGY----q~~g~yAp~sryGtPedfk~fVD~aH~~GIgViLD 233 (628)
T COG0296 168 IELLPYLKELGITHIELMPVAEHPGDRSWGY----QGTGYYAPTSRYGTPEDFKALVDAAHQAGIGVILD 233 (628)
T ss_pred HHHhHHHHHhCCCEEEEcccccCCCCCCCCC----CcceeccccccCCCHHHHHHHHHHHHHcCCEEEEE
Confidence 457888999999999963 21 655 2222 2445679999999999999999986
No 104
>cd06589 GH31 The enzymes of glycosyl hydrolase family 31 (GH31) occur in prokaryotes, eukaryotes, and archaea with a wide range of hydrolytic activities, including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. In most cases, the pyranose moiety recognized in subsite -1 of the substrate binding site is an alpha-D-glucose, though some GH31 family members show a preference for alpha-D-xylose. Several GH31 enzymes can accommodate both glucose and xylose and different levels of discrimination between the two have been observed. Most characterized GH31 enzymes are alpha-glucosidases. In mammals, GH31 members with alpha-glucosidase activity are implicated in at least three distinct biological processes
Probab=58.78 E-value=29 Score=37.50 Aligned_cols=71 Identities=13% Similarity=0.189 Sum_probs=52.8
Q ss_pred eeCCCC---CcccHHHHHHHHHHcCCCEEEEceeCCcccCCCCee--eeccc--hhHHHHHHHHHHcCcEEEEecCccc
Q 046146 38 IHYPRS---VPAMWPELIQAAKEGGLNTIESYVFWSGHELSPGKY--SFEGR--YDLVKFVKTVQQAGMYMLLRIGPFV 109 (829)
Q Consensus 38 ~Hy~R~---~~~~W~d~l~k~ka~GlNtV~~yv~Wn~hEp~~G~~--dF~g~--~dl~~fl~~a~~~GL~VilrpGPyi 109 (829)
+|..|. ..+..++.++.+++.|+-.=.+.+-+.+.+. -+.| +|+-. -|..++++.+++.|++|+|..=|+|
T Consensus 13 ~~~~~~~~~~~~~v~~~~~~~~~~~iP~d~~~lD~~~~~~-~~~f~~~~d~~~Fpdp~~~i~~l~~~g~~~~~~~~P~v 90 (265)
T cd06589 13 YWLSRYGYGDQDKVLEVIDGMRENDIPLDGFVLDDDYTDG-YGDFTFDWDAGKFPNPKSMIDELHDNGVKLVLWIDPYI 90 (265)
T ss_pred HHHhcCCCCCHHHHHHHHHHHHHcCCCccEEEECcccccC-CceeeeecChhhCCCHHHHHHHHHHCCCEEEEEeChhH
Confidence 344453 5667888999999999986666665555443 3555 44322 3899999999999999999998888
No 105
>PRK10785 maltodextrin glucosidase; Provisional
Probab=58.75 E-value=19 Score=43.73 Aligned_cols=58 Identities=22% Similarity=0.324 Sum_probs=40.7
Q ss_pred HHHHHHHHHcCCCEEEEc-eeCC--cccCCCCee-----eeccchhHHHHHHHHHHcCcEEEEecC
Q 046146 49 PELIQAAKEGGLNTIESY-VFWS--GHELSPGKY-----SFEGRYDLVKFVKTVQQAGMYMLLRIG 106 (829)
Q Consensus 49 ~d~l~k~ka~GlNtV~~y-v~Wn--~hEp~~G~~-----dF~g~~dl~~fl~~a~~~GL~VilrpG 106 (829)
.+.|.-+|++|+|+|-.- ||=+ .|---..-| .|.+..||.++++.|++.||+|||-.=
T Consensus 182 ~~kLdYL~~LGv~~I~L~Pif~s~s~hgYd~~Dy~~iDp~~Gt~~df~~Lv~~aH~rGikVilD~V 247 (598)
T PRK10785 182 SEKLPYLKKLGVTALYLNPIFTAPSVHKYDTEDYRHVDPQLGGDAALLRLRHATQQRGMRLVLDGV 247 (598)
T ss_pred HHHHHHHHHcCCCEEEeCCcccCCCCCCcCcccccccCcccCCHHHHHHHHHHHHHCCCEEEEEEC
Confidence 467888999999999864 5422 121111111 245668999999999999999998653
No 106
>PF06832 BiPBP_C: Penicillin-Binding Protein C-terminus Family; InterPro: IPR009647 This conserved region of approximately 90 residues is found in a sub-group of bacterial Penicillin-Binding Proteins (PBPs). A variable length loop region separates this region from the transpeptidase unit (IPR001460 from INTERPRO). It is predicted to be a beta fold.
Probab=58.51 E-value=18 Score=32.28 Aligned_cols=49 Identities=14% Similarity=0.226 Sum_probs=32.4
Q ss_pred eEEecCcceEEEEEEcCEEEEEEEeccCCceeeEEEeeeec-CCCccEEEEEEecCCcc
Q 046146 490 VLLIESKGHTLHAFINQELVQGNSTYSTGTLVFSFTALIPL-KAGKNKIDLLSMTVGLP 547 (829)
Q Consensus 490 ~L~i~~~~D~~~vfvng~~v~G~~~~~~~~~~~~~~~~~~l-~~g~~~L~ILven~Gr~ 547 (829)
.|++.+-...++.||||+++ |+..... .+.+ .+ ..|.++|.+ +...|+.
T Consensus 35 ~l~a~~~~~~~~W~vdg~~~-g~~~~~~---~~~~----~~~~~G~h~l~v-vD~~G~~ 84 (89)
T PF06832_consen 35 VLKAAGGRGPVYWFVDGEPL-GTTQPGH---QLFW----QPDRPGEHTLTV-VDAQGRS 84 (89)
T ss_pred EEEEeCCCCcEEEEECCEEc-ccCCCCC---eEEe----CCCCCeeEEEEE-EcCCCCE
Confidence 45555445699999999999 8765322 2222 24 678888877 6666754
No 107
>PLN02361 alpha-amylase
Probab=56.73 E-value=23 Score=40.93 Aligned_cols=56 Identities=11% Similarity=0.132 Sum_probs=40.0
Q ss_pred HHHHHHHHcCCCEEEEceeCCc---ccCCCCe-e----eeccchhHHHHHHHHHHcCcEEEEec
Q 046146 50 ELIQAAKEGGLNTIESYVFWSG---HELSPGK-Y----SFEGRYDLVKFVKTVQQAGMYMLLRI 105 (829)
Q Consensus 50 d~l~k~ka~GlNtV~~yv~Wn~---hEp~~G~-~----dF~g~~dl~~fl~~a~~~GL~Vilrp 105 (829)
+.|.-++++|+++|-+.=+..- |--.|.. | .|....+|.++++.|+++||+||+-.
T Consensus 33 ~kl~~l~~lG~t~iwl~P~~~~~~~~GY~~~d~y~~~~~~Gt~~el~~li~~~h~~gi~vi~D~ 96 (401)
T PLN02361 33 GKVPDLAKSGFTSAWLPPPSQSLAPEGYLPQNLYSLNSAYGSEHLLKSLLRKMKQYNVRAMADI 96 (401)
T ss_pred HHHHHHHHcCCCEEEeCCCCcCCCCCCCCcccccccCcccCCHHHHHHHHHHHHHcCCEEEEEE
Confidence 4667789999999987744322 2222222 2 24456799999999999999999865
No 108
>TIGR00677 fadh2_euk methylenetetrahydrofolate reductase, eukaryotic type. This protein is an FAD-containing flavoprotein.
Probab=54.72 E-value=43 Score=36.77 Aligned_cols=109 Identities=11% Similarity=0.175 Sum_probs=70.7
Q ss_pred EEEEEEeeCCCCCc---ccH-HHHHHHHHHcCCCEEEEceeCCcccCCCCeeeeccchhHHHHHHHHHHcCcEEEEecCc
Q 046146 32 LFLSASIHYPRSVP---AMW-PELIQAAKEGGLNTIESYVFWSGHELSPGKYSFEGRYDLVKFVKTVQQAGMYMLLRIGP 107 (829)
Q Consensus 32 ~~~sG~~Hy~R~~~---~~W-~d~l~k~ka~GlNtV~~yv~Wn~hEp~~G~~dF~g~~dl~~fl~~a~~~GL~VilrpGP 107 (829)
+-+++..|+..-+. ... -++|++-.++|.+.+-|-.+ ||.+ .+.+|++.|++.|+.+=+-||.
T Consensus 130 f~igva~~Pe~Hp~~~~~~~d~~~L~~Ki~aGA~f~iTQ~~----------Fd~~---~~~~f~~~~~~~gi~~PIi~GI 196 (281)
T TIGR00677 130 FCIGVAGYPEGHPEAESVELDLKYLKEKVDAGADFIITQLF----------YDVD---NFLKFVNDCRAIGIDCPIVPGI 196 (281)
T ss_pred eEEEEEECCCCCCCCCCHHHHHHHHHHHHHcCCCEeeccce----------ecHH---HHHHHHHHHHHcCCCCCEEeec
Confidence 56888888766322 112 23444444699999988775 4445 7899999999997764445554
Q ss_pred ccc---------cccCCCCCCccccccCCeeeecCChhHHHHHHHHHHHHHHHHhh
Q 046146 108 FVA---------AEYNYGGVPVWLHYIPGSVFRSYSKPFMSYMQKFMTLIVDMMKK 154 (829)
Q Consensus 108 yic---------aEw~~GG~P~WL~~~p~~~~R~~~~~y~~~~~~~~~~l~~~i~~ 154 (829)
..+ +||..--+|.||.+.=. ....+++...+.--++..++++.+.+
T Consensus 197 ~pi~s~~~~~~~~~~~Gi~vP~~l~~~l~-~~~~~~~~~~~~gi~~a~~~~~~l~~ 251 (281)
T TIGR00677 197 MPINNYASFLRRAKWSKTKIPQEIMSRLE-PIKDDDEAVRDYGIELIVEMCQKLLA 251 (281)
T ss_pred cccCCHHHHHHHHhcCCCCCCHHHHHHHH-hccCCHHHHHHHHHHHHHHHHHHHHH
Confidence 433 57887778999986210 01233445566777777888888774
No 109
>PRK14511 maltooligosyl trehalose synthase; Provisional
Probab=53.70 E-value=26 Score=44.28 Aligned_cols=64 Identities=19% Similarity=0.222 Sum_probs=46.8
Q ss_pred CcccHHHHHHHHHHcCCCEEEEceeCCcccCCCC------eee-------eccchhHHHHHHHHHHcCcEEEEecCcccc
Q 046146 44 VPAMWPELIQAAKEGGLNTIESYVFWSGHELSPG------KYS-------FEGRYDLVKFVKTVQQAGMYMLLRIGPFVA 110 (829)
Q Consensus 44 ~~~~W~d~l~k~ka~GlNtV~~yv~Wn~hEp~~G------~~d-------F~g~~dl~~fl~~a~~~GL~VilrpGPyic 110 (829)
+-+-|.+.|.-++++|+|+|-.-=++. ..+| ..| |.+..++.+|++.|+++||.|||-.=|-=+
T Consensus 18 tf~~~~~~l~YL~~LGis~IyLsPi~~---a~~gs~hGYdv~D~~~idp~lGt~e~f~~Lv~aah~~Gi~VIlDiV~NH~ 94 (879)
T PRK14511 18 TFDDAAELVPYFADLGVSHLYLSPILA---ARPGSTHGYDVVDHTRINPELGGEEGLRRLAAALRAHGMGLILDIVPNHM 94 (879)
T ss_pred CHHHHHHHhHHHHHcCCCEEEECcCcc---CCCCCCCCCCcCCCCCcCCCCCCHHHHHHHHHHHHHCCCEEEEEeccccc
Confidence 345588999999999999997653321 1122 112 446789999999999999999998766443
No 110
>KOG0626 consensus Beta-glucosidase, lactase phlorizinhydrolase, and related proteins [Carbohydrate transport and metabolism]
Probab=53.23 E-value=28 Score=41.31 Aligned_cols=99 Identities=16% Similarity=0.155 Sum_probs=75.7
Q ss_pred cHHHHHHHHHHcCCCEEEEceeCCcccCCC---CeeeeccchhHHHHHHHHHHcCcEEEEecCcccccccCCCCCCcccc
Q 046146 47 MWPELIQAAKEGGLNTIESYVFWSGHELSP---GKYSFEGRYDLVKFVKTVQQAGMYMLLRIGPFVAAEYNYGGVPVWLH 123 (829)
Q Consensus 47 ~W~d~l~k~ka~GlNtV~~yv~Wn~hEp~~---G~~dF~g~~dl~~fl~~a~~~GL~VilrpGPyicaEw~~GG~P~WL~ 123 (829)
.++++++.||++|++.-+.-|-|+..=|.- +.-+=.|..--..+|+...++||..++-. -.=.+|.||.
T Consensus 92 ~ykeDv~Lmk~lgv~afRFSIsWSRIlP~G~~~~gVN~~Gi~fY~~LI~eL~~nGI~P~VTL--------fHwDlPq~Le 163 (524)
T KOG0626|consen 92 RYKEDVKLMKELGVDAFRFSISWSRILPNGRLTGGVNEAGIQFYNNLIDELLANGIEPFVTL--------FHWDLPQALE 163 (524)
T ss_pred hhHHHHHHHHHcCCCeEEEEeehHhhCCCCCcCCCcCHHHHHHHHHHHHHHHHcCCeEEEEE--------ecCCCCHHHH
Confidence 489999999999999999999999877752 45778888888888999999999866553 1335799998
Q ss_pred c-cCCeeeecCChhHHHHHHHHHHHHHHHHh
Q 046146 124 Y-IPGSVFRSYSKPFMSYMQKFMTLIVDMMK 153 (829)
Q Consensus 124 ~-~p~~~~R~~~~~y~~~~~~~~~~l~~~i~ 153 (829)
+ .-+-.-+..=..|+++++-=|+++..++|
T Consensus 164 DeYgGwLn~~ivedF~~yA~~CF~~fGDrVK 194 (524)
T KOG0626|consen 164 DEYGGWLNPEIVEDFRDYADLCFQEFGDRVK 194 (524)
T ss_pred HHhccccCHHHHHHHHHHHHHHHHHhcccce
Confidence 6 45533233334577777777788877776
No 111
>PRK14507 putative bifunctional 4-alpha-glucanotransferase/malto-oligosyltrehalose synthase; Provisional
Probab=53.18 E-value=25 Score=47.45 Aligned_cols=65 Identities=17% Similarity=0.182 Sum_probs=46.8
Q ss_pred CcccHHHHHHHHHHcCCCEEEEceeCCcccCCCCee----------eeccchhHHHHHHHHHHcCcEEEEecCcc
Q 046146 44 VPAMWPELIQAAKEGGLNTIESYVFWSGHELSPGKY----------SFEGRYDLVKFVKTVQQAGMYMLLRIGPF 108 (829)
Q Consensus 44 ~~~~W~d~l~k~ka~GlNtV~~yv~Wn~hEp~~G~~----------dF~g~~dl~~fl~~a~~~GL~VilrpGPy 108 (829)
+-+-|.+.|.-+|++|+|+|-.-=++........-| .|.+..++.+|++.|+++||.|||-.=|-
T Consensus 756 tf~~~~~~l~Yl~~LGv~~i~lsPi~~a~~gs~hGYdv~D~~~idp~lG~~edf~~Lv~~ah~~Gi~vilDiV~N 830 (1693)
T PRK14507 756 TFADAEAILPYLAALGISHVYASPILKARPGSTHGYDIVDHSQINPEIGGEEGFERFCAALKAHGLGQLLDIVPN 830 (1693)
T ss_pred CHHHHHHHhHHHHHcCCCEEEECCCcCCCCCCCCCCCCCCCCccCcccCCHHHHHHHHHHHHHCCCEEEEEeccc
Confidence 445689999999999999997663332111111112 24577899999999999999999987553
No 112
>PF11875 DUF3395: Domain of unknown function (DUF3395); InterPro: IPR024586 Chaperone DnaJ was originally characterised from Escherichia coli as a 41 kDa heat shock protein. DnaJ has a modular structure consisting of a J-domain, a proximal G/F-domain, and a distal zinc finger domain, followed by less conserved C-terminal sequences. Since then, a large number of DnaJ-related proteins containing a J-domain have been characterised from a variety of different organisms. In the genome of Arabidopsis thaliana a total of 89 J-domain proteins have been identified []. This entry represents a C-terminal domain found in some eukaryotic DnaJ-like proteins, including member 11 from the subfamily C1 and protein DnaJ 13 from Arabidopsis. This domain is typically between 147 to 176 amino acids in length.
Probab=52.69 E-value=11 Score=37.74 Aligned_cols=67 Identities=18% Similarity=0.095 Sum_probs=35.8
Q ss_pred EEeeecCCCCC--CCCCcCcC--ceeCCChhh-HHHhhcCCCCceEEEeC-CC---CCCC-CCCC--CCceEEEEEEEe
Q 046146 762 VKFASFGTPTG--KCGSFRMG--DCHDPNSTS-FVEKVCLNKNKCAIELT-ET---NFNK-GLCP--DATKTLAVEVTC 828 (829)
Q Consensus 762 I~~A~yGr~~~--~C~~~~~~--~C~~~~s~~-~V~~~C~Gk~~C~v~a~-~~---~Fg~-DPC~--gt~KyL~V~y~C 828 (829)
|..|-||.... .+.+.... .+..+...+ .|.=.|+=+.|+-.... .+ +.|- |||| |..|.|.|.|..
T Consensus 55 I~~A~YG~~~~~~~~~~~~~~~~~~~~~~~iDVTipLq~lV~dS~L~l~~~~sKs~L~GF~DP~p~~ge~K~L~V~Y~f 133 (151)
T PF11875_consen 55 ILKAWYGNLPAKSDESNNDEPEDPDLDPPVIDVTIPLQALVKDSQLILPEGVSKSGLPGFYDPCPFLGEPKQLRVRYRF 133 (151)
T ss_pred EEEEEcCCcccccccccccccccccccCcEEEEhhhhhhEeecCEEEEcCCCchhhCCCCCCCccccCCccEEEEEEEE
Confidence 78999999432 33211110 112222222 23334555555544433 11 2232 9999 999999999975
No 113
>cd06591 GH31_xylosidase_XylS XylS is a glycosyl hydrolase family 31 (GH31) alpha-xylosidase found in prokaryotes, eukaryotes, and archaea, that catalyzes the release of alpha-xylose from the non-reducing terminal side of the alpha-xyloside substrate. XylS has been characterized in Sulfolobus solfataricus where it hydrolyzes isoprimeverose, the p-nitrophenyl-beta derivative of isoprimeverose, and xyloglucan oligosaccharides, and has transxylosidic activity. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The XylS family corresponds to subgroup 3 in the Ernst et al classification of GH31 enzymes.
Probab=51.53 E-value=27 Score=38.84 Aligned_cols=72 Identities=11% Similarity=0.201 Sum_probs=52.2
Q ss_pred eeCCCC---CcccHHHHHHHHHHcCCCEEEEceeCCcccCCCC--eeeeccch--hHHHHHHHHHHcCcEEEEecCcccc
Q 046146 38 IHYPRS---VPAMWPELIQAAKEGGLNTIESYVFWSGHELSPG--KYSFEGRY--DLVKFVKTVQQAGMYMLLRIGPFVA 110 (829)
Q Consensus 38 ~Hy~R~---~~~~W~d~l~k~ka~GlNtV~~yv~Wn~hEp~~G--~~dF~g~~--dl~~fl~~a~~~GL~VilrpGPyic 110 (829)
+|..|. ..+.-++.++++++.||-.=.+.+=|.+.. ..+ .|+|+-.+ |..++++..++.|++|++..=|+|.
T Consensus 13 ~~~sr~~y~~~~ev~~~~~~~~~~~iP~d~i~lD~~~~~-~~~~~~f~~d~~~FPdp~~mi~~L~~~G~kv~~~i~P~v~ 91 (319)
T cd06591 13 FWQSKERYKTQEELLDVAKEYRKRGIPLDVIVQDWFYWP-KQGWGEWKFDPERFPDPKAMVRELHEMNAELMISIWPTFG 91 (319)
T ss_pred HHHhcccCCCHHHHHHHHHHHHHhCCCccEEEEechhhc-CCCceeEEEChhhCCCHHHHHHHHHHCCCEEEEEecCCcC
Confidence 344453 455568899999999987655555555433 344 77776543 8999999999999999998877763
No 114
>PF01791 DeoC: DeoC/LacD family aldolase; InterPro: IPR002915 This family includes the enzyme deoxyribose-phosphate aldolase, which is involved in nucleotide metabolism. 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde The family also includes a group of related bacterial proteins of unknown function, see examples Q57843 from SWISSPROT and P76143 from SWISSPROT.; GO: 0016829 lyase activity; PDB: 2A4A_A 1VCV_B 1P1X_A 1KTN_B 1JCL_A 1JCJ_A 1MZH_A 3GKF_D 3GLC_L 3GND_N ....
Probab=51.51 E-value=6 Score=41.90 Aligned_cols=54 Identities=11% Similarity=0.198 Sum_probs=43.3
Q ss_pred HHHHHHHHHcCCCEEEEceeCCcccCCCCeeeeccchhHHHHHHHHHHcCcEEEEec
Q 046146 49 PELIQAAKEGGLNTIESYVFWSGHELSPGKYSFEGRYDLVKFVKTVQQAGMYMLLRI 105 (829)
Q Consensus 49 ~d~l~k~ka~GlNtV~~yv~Wn~hEp~~G~~dF~g~~dl~~fl~~a~~~GL~Vilrp 105 (829)
-...+++.++|.+.|.+.++|..-.+..-.+... ++.++.+.|++.||.|||.+
T Consensus 79 ~~~ve~A~~~GAd~vd~vi~~~~~~~~~~~~~~~---~i~~v~~~~~~~gl~vIlE~ 132 (236)
T PF01791_consen 79 VAEVEEAIRLGADEVDVVINYGALGSGNEDEVIE---EIAAVVEECHKYGLKVILEP 132 (236)
T ss_dssp HHHHHHHHHTT-SEEEEEEEHHHHHTTHHHHHHH---HHHHHHHHHHTSEEEEEEEE
T ss_pred HHHHHHHHHcCCceeeeeccccccccccHHHHHH---HHHHHHHHHhcCCcEEEEEE
Confidence 4567889999999999999997655544444444 89999999999999999993
No 115
>PRK14510 putative bifunctional 4-alpha-glucanotransferase/glycogen debranching enzyme; Provisional
Probab=51.26 E-value=22 Score=46.80 Aligned_cols=57 Identities=28% Similarity=0.416 Sum_probs=38.7
Q ss_pred HHHHHHHHcCCCEEEEc-eeCCcccCC---CC-----eee----------ec--cchhHHHHHHHHHHcCcEEEEecC
Q 046146 50 ELIQAAKEGGLNTIESY-VFWSGHELS---PG-----KYS----------FE--GRYDLVKFVKTVQQAGMYMLLRIG 106 (829)
Q Consensus 50 d~l~k~ka~GlNtV~~y-v~Wn~hEp~---~G-----~~d----------F~--g~~dl~~fl~~a~~~GL~VilrpG 106 (829)
+.|.-+|++|+|+|+.- |+=...|.. .| -|| |. +..++.++++.|+++||.|||-.=
T Consensus 191 ~~i~yLk~LGvt~I~L~Pi~~~~~~~~~~~~g~~~yWGY~~~~yfa~dp~yg~~~~~efk~lV~~~H~~GI~VILDvV 268 (1221)
T PRK14510 191 EAISYLKKLGVSIVELNPIFASVDEHHLPQLGLSNYWGYNTVAFLAPDPRLAPGGEEEFAQAIKEAQSAGIAVILDVV 268 (1221)
T ss_pred hhHHHHHHcCCCEEEeCCccccCcccccccccCcCcCCCCCCCCCCcChhhccCcHHHHHHHHHHHHHCCCEEEEEEc
Confidence 34668999999999863 442221111 01 021 33 567999999999999999999853
No 116
>cd06592 GH31_glucosidase_KIAA1161 KIAA1161 is an uncharacterized Homo sapiens protein with a glycosyl hydrolase family 31 (GH31) domain that is homologous to the Escherichia coli YihQ glucosidase. Orthologs of KIA1161 are found in eukaryotes and prokaryotes. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=51.25 E-value=36 Score=37.64 Aligned_cols=69 Identities=17% Similarity=0.314 Sum_probs=51.7
Q ss_pred CCCCcccHHHHHHHHHHcCCC--EEEEceeCCcccCCCCeeeeccc--hhHHHHHHHHHHcCcEEEEecCcccccc
Q 046146 41 PRSVPAMWPELIQAAKEGGLN--TIESYVFWSGHELSPGKYSFEGR--YDLVKFVKTVQQAGMYMLLRIGPFVAAE 112 (829)
Q Consensus 41 ~R~~~~~W~d~l~k~ka~GlN--tV~~yv~Wn~hEp~~G~~dF~g~--~dl~~fl~~a~~~GL~VilrpGPyicaE 112 (829)
...+.+.-++.++++++.|+. +|-+=..|- ..-|.|.|+-. -|..++++..++.|+++++..=|+|..+
T Consensus 25 ~~~s~~~v~~~~~~~~~~~iP~d~i~iD~~w~---~~~g~f~~d~~~FPdp~~mi~~l~~~G~k~~l~i~P~i~~~ 97 (303)
T cd06592 25 ADINQETVLNYAQEIIDNGFPNGQIEIDDNWE---TCYGDFDFDPTKFPDPKGMIDQLHDLGFRVTLWVHPFINTD 97 (303)
T ss_pred cCcCHHHHHHHHHHHHHcCCCCCeEEeCCCcc---ccCCccccChhhCCCHHHHHHHHHHCCCeEEEEECCeeCCC
Confidence 446777789999999999975 444434452 34566666532 3899999999999999999999998753
No 117
>PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=50.96 E-value=78 Score=34.57 Aligned_cols=76 Identities=16% Similarity=0.266 Sum_probs=58.1
Q ss_pred cEEECCEEeEEEEEEeeCCCC-CcccHHHHHHHHHHcCCCEEEEceeCCcccCCCCeeeec--cchhHHHHHHHHHHcCc
Q 046146 23 SLIIHGRRKLFLSASIHYPRS-VPAMWPELIQAAKEGGLNTIESYVFWSGHELSPGKYSFE--GRYDLVKFVKTVQQAGM 99 (829)
Q Consensus 23 ~~~idGkp~~~~sG~~Hy~R~-~~~~W~d~l~k~ka~GlNtV~~yv~Wn~hEp~~G~~dF~--g~~dl~~fl~~a~~~GL 99 (829)
.+.+.|.+++++.|= =.+ .++.-.+.-+++|++|+..+..|.+=+... .+.|. |...+..+-+.+++.||
T Consensus 20 ~~~~g~~~~~~iaGP---Csie~~~~~~~~A~~lk~~g~~~~r~~~~kpRTs----~~s~~G~g~~gl~~l~~~~~~~Gl 92 (266)
T PRK13398 20 DVVIGGEEKIIIAGP---CAVESEEQMVKVAEKLKELGVHMLRGGAFKPRTS----PYSFQGLGEEGLKILKEVGDKYNL 92 (266)
T ss_pred CEEEcCCCEEEEEeC---CcCCCHHHHHHHHHHHHHcCCCEEEEeeecCCCC----CCccCCcHHHHHHHHHHHHHHcCC
Confidence 377777788999882 222 567778889999999999999998763333 33566 56788889999999999
Q ss_pred EEEEec
Q 046146 100 YMLLRI 105 (829)
Q Consensus 100 ~Vilrp 105 (829)
.++-.|
T Consensus 93 ~~~te~ 98 (266)
T PRK13398 93 PVVTEV 98 (266)
T ss_pred CEEEee
Confidence 888776
No 118
>cd06598 GH31_transferase_CtsZ CtsZ (cyclic tetrasaccharide-synthesizing enzyme Z) is a bacterial 6-alpha-glucosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsY. CtsZ and CtsY both have a glycosyl hydrolase family 31 (GH31) catalytic domain. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=50.68 E-value=30 Score=38.44 Aligned_cols=67 Identities=12% Similarity=0.129 Sum_probs=49.3
Q ss_pred CcccHHHHHHHHHHcCCCEEEEceeCCcccC-----CCCeeeeccch--hHHHHHHHHHHcCcEEEEecCcccc
Q 046146 44 VPAMWPELIQAAKEGGLNTIESYVFWSGHEL-----SPGKYSFEGRY--DLVKFVKTVQQAGMYMLLRIGPFVA 110 (829)
Q Consensus 44 ~~~~W~d~l~k~ka~GlNtV~~yv~Wn~hEp-----~~G~~dF~g~~--dl~~fl~~a~~~GL~VilrpGPyic 110 (829)
..+..++.++++|+.|+-.=.+.+-+.++.. .-|.|+|+-.+ |..++++..++.|++|++..=|+|+
T Consensus 22 ~~~~v~~~~~~~~~~~iP~d~i~lD~~w~~~~~~~~~~~~f~wd~~~FPdp~~mi~~L~~~G~k~~~~v~P~v~ 95 (317)
T cd06598 22 NWQEVDDTIKTLREKDFPLDAAILDLYWFGKDIDKGHMGNLDWDRKAFPDPAGMIADLAKKGVKTIVITEPFVL 95 (317)
T ss_pred CHHHHHHHHHHHHHhCCCceEEEEechhhcCcccCCceeeeEeccccCCCHHHHHHHHHHcCCcEEEEEcCccc
Confidence 4566789999999999976555554333332 23566665432 8999999999999999999888775
No 119
>cd06601 GH31_lyase_GLase GLases (alpha-1,4-glucan lyases) are glycosyl hydrolase family 31 (GH31) enzymes that degrade alpha-1,4-glucans and maltooligosaccharides via a nonhydrolytic pathway to yield 1,5-D-anhydrofructose from the nonreducing end. GLases cleave the bond between C1 and O1 of the nonreducing sugar residue of alpha-glucans to generate a monosaccharide product with a double bond between C1 and C2. This family corresponds to subgroup 2 in the Ernst et al classification of GH31 enzymes.
Probab=48.93 E-value=67 Score=36.18 Aligned_cols=72 Identities=10% Similarity=0.107 Sum_probs=55.6
Q ss_pred eeCCCC---CcccHHHHHHHHHHcCCCEEEEceeCCcccCCCCeeeeccch--hHHHHHHHHHHcCcEEEEecCcccc
Q 046146 38 IHYPRS---VPAMWPELIQAAKEGGLNTIESYVFWSGHELSPGKYSFEGRY--DLVKFVKTVQQAGMYMLLRIGPFVA 110 (829)
Q Consensus 38 ~Hy~R~---~~~~W~d~l~k~ka~GlNtV~~yv~Wn~hEp~~G~~dF~g~~--dl~~fl~~a~~~GL~VilrpGPyic 110 (829)
+|..|+ ..+..++.++++++.+|-.=.+++=|.++. .-+.|.|+..+ |..++++..++.|+++++..=|+|.
T Consensus 13 ~~qsr~~Y~~~~ev~~v~~~~r~~~IP~D~i~lDidy~~-~~~~Ft~d~~~FPdp~~mv~~L~~~G~klv~~i~P~i~ 89 (332)
T cd06601 13 FHQGCYGYSNRSDLEEVVEGYRDNNIPLDGLHVDVDFQD-NYRTFTTNGGGFPNPKEMFDNLHNKGLKCSTNITPVIS 89 (332)
T ss_pred hhhCCCCCCCHHHHHHHHHHHHHcCCCCceEEEcCchhc-CCCceeecCCCCCCHHHHHHHHHHCCCeEEEEecCcee
Confidence 565664 567788999999999997655565565554 34667776543 8899999999999999999889997
No 120
>PLN00196 alpha-amylase; Provisional
Probab=46.31 E-value=44 Score=38.98 Aligned_cols=59 Identities=12% Similarity=0.210 Sum_probs=41.2
Q ss_pred HHHHHHHHHcCCCEEEEceeCCc---ccCCCCe-ee-----eccchhHHHHHHHHHHcCcEEEEecCc
Q 046146 49 PELIQAAKEGGLNTIESYVFWSG---HELSPGK-YS-----FEGRYDLVKFVKTVQQAGMYMLLRIGP 107 (829)
Q Consensus 49 ~d~l~k~ka~GlNtV~~yv~Wn~---hEp~~G~-~d-----F~g~~dl~~fl~~a~~~GL~VilrpGP 107 (829)
.+.|.-+|++|+++|-+.=+..- |--.+.. |+ |....+|.++++.|++.||+||+-.=+
T Consensus 47 ~~kldyL~~LGvtaIWL~P~~~s~s~hGY~~~D~y~ld~~~fGt~~elk~Lv~~aH~~GIkVilDvV~ 114 (428)
T PLN00196 47 MGKVDDIAAAGITHVWLPPPSHSVSEQGYMPGRLYDLDASKYGNEAQLKSLIEAFHGKGVQVIADIVI 114 (428)
T ss_pred HHHHHHHHHcCCCEEEeCCCCCCCCCCCCCccccCCCCcccCCCHHHHHHHHHHHHHCCCEEEEEECc
Confidence 36788889999999987643321 2222222 22 334579999999999999999987633
No 121
>cd06603 GH31_GANC_GANAB_alpha This family includes the closely related glycosyl hydrolase family 31 (GH31) isozymes, neutral alpha-glucosidase C (GANC) and the alpha subunit of heterodimeric neutral alpha-glucosidase AB (GANAB). Initially distinguished on the basis of differences in electrophoretic mobility in starch gel, GANC and GANAB have been shown to have other differences, including those of substrate specificity. GANC and GANAB are key enzymes in glycogen metabolism that hydrolyze terminal, non-reducing 1,4-linked alpha-D-glucose residues from glycogen in the endoplasmic reticulum. The GANC/GANAB family includes the alpha-glucosidase II (ModA) from Dictyostelium discoideum as well as the alpha-glucosidase II (GLS2, or ROT2 - Reversal of TOR2 lethality protein 2) from Saccharomyces cerevisiae.
Probab=45.66 E-value=36 Score=38.23 Aligned_cols=74 Identities=11% Similarity=0.077 Sum_probs=53.6
Q ss_pred eeCCCC---CcccHHHHHHHHHHcCCCEEEEceeCCcccCCCCeeeeccch--hHHHHHHHHHHcCcEEEEecCcccccc
Q 046146 38 IHYPRS---VPAMWPELIQAAKEGGLNTIESYVFWSGHELSPGKYSFEGRY--DLVKFVKTVQQAGMYMLLRIGPFVAAE 112 (829)
Q Consensus 38 ~Hy~R~---~~~~W~d~l~k~ka~GlNtV~~yv~Wn~hEp~~G~~dF~g~~--dl~~fl~~a~~~GL~VilrpGPyicaE 112 (829)
+|..|. ..+.-++.++++++.||..=.+.+-+.+ ....+.|+|+-.+ |..+|++..++.|++|++..=|+|+.+
T Consensus 13 ~~~sr~~y~~~~ev~~~~~~~~~~~iP~d~i~lD~~~-~~~~~~f~~d~~~FPdp~~mi~~L~~~G~k~~~~~~P~v~~~ 91 (339)
T cd06603 13 YHQCRWNYKDQEDVKEVDAGFDEHDIPYDVIWLDIEH-TDGKRYFTWDKKKFPDPEKMQEKLASKGRKLVTIVDPHIKRD 91 (339)
T ss_pred HHhcCCCCCCHHHHHHHHHHHHHcCCCceEEEEChHH-hCCCCceEeCcccCCCHHHHHHHHHHCCCEEEEEecCceecC
Confidence 455553 4555688899999999976555544332 2345667776432 899999999999999999999998753
No 122
>KOG1412 consensus Aspartate aminotransferase/Glutamic oxaloacetic transaminase AAT2/GOT1 [Amino acid transport and metabolism]
Probab=45.60 E-value=78 Score=35.43 Aligned_cols=118 Identities=21% Similarity=0.347 Sum_probs=70.0
Q ss_pred CcccHHHHHHHHHHcCCCEEEEceeCCcccCCCCeeeeccchhHHHHHHHHHHcCcE-EEEecCcccccccCCCCCCccc
Q 046146 44 VPAMWPELIQAAKEGGLNTIESYVFWSGHELSPGKYSFEGRYDLVKFVKTVQQAGMY-MLLRIGPFVAAEYNYGGVPVWL 122 (829)
Q Consensus 44 ~~~~W~d~l~k~ka~GlNtV~~yv~Wn~hEp~~G~~dF~g~~dl~~fl~~a~~~GL~-VilrpGPyicaEw~~GG~P~WL 122 (829)
....|+..-.-.+.+||-||.+|-+|+.-+.. .|++.||.-.+.+--+ ||+-. .||-=.+|=
T Consensus 131 SnPTW~nH~~if~~aGf~tv~~Y~yWd~~~k~---------~d~e~~Lsdl~~APe~si~iLh---aCAhNPTGm----- 193 (410)
T KOG1412|consen 131 SNPTWENHHAIFEKAGFTTVATYPYWDAENKC---------VDLEGFLSDLESAPEGSIIILH---ACAHNPTGM----- 193 (410)
T ss_pred cCCchhHHHHHHHHcCCceeeeeeeecCCCce---------ecHHHHHHHHhhCCCCcEEeee---ccccCCCCC-----
Confidence 34569999999999999999999999974421 2677888877776444 33322 255443331
Q ss_pred cccCCeeeecCChhHHHHHHHHHHHHHHHHhhccccccCCCcEEEeccccccccchhhcc-CcHHHHHHHHHHHHhCCCc
Q 046146 123 HYIPGSVFRSYSKPFMSYMQKFMTLIVDMMKKEKLFASQGGPIILAQVENEYQWYEQFYK-GGKEYAMWAASMAVSQNTG 201 (829)
Q Consensus 123 ~~~p~~~~R~~~~~y~~~~~~~~~~l~~~i~~~~l~~~~gGpII~~QiENEyg~~~~~y~-~~~~y~~~l~~~~~~~g~~ 201 (829)
+|- .+. +.+|++.|+...|+.-=. |+.| |. +.| .+++ .|....+.+.|
T Consensus 194 --DPT----------~EQ----W~qia~vik~k~lf~fFD---iAYQ-----Gf---ASGD~~~D--awAiR~fV~~g-- 242 (410)
T KOG1412|consen 194 --DPT----------REQ----WKQIADVIKSKNLFPFFD---IAYQ-----GF---ASGDLDAD--AWAIRYFVEQG-- 242 (410)
T ss_pred --CCC----------HHH----HHHHHHHHHhcCceeeee---hhhc-----cc---ccCCcccc--HHHHHHHHhcC--
Confidence 121 122 235677777544431000 2333 21 122 3333 78888888888
Q ss_pred cceeeecc
Q 046146 202 VPWIMCQQ 209 (829)
Q Consensus 202 vp~~~~~~ 209 (829)
.++|.|+.
T Consensus 243 ~e~fv~QS 250 (410)
T KOG1412|consen 243 FELFVCQS 250 (410)
T ss_pred CeEEEEhh
Confidence 46787775
No 123
>PF02228 Gag_p19: Major core protein p19; InterPro: IPR003139 Retroviral matrix proteins (or major core proteins) are components of envelope-associated capsids, which line the inner surface of virus envelopes and are associated with viral membranes []. Matrix proteins are produced as part of Gag precursor polyproteins. During viral maturation, the Gag polyprotein is cleaved into major structural proteins by the viral protease, yielding the matrix (MA), capsid (CA), nucleocapsid (NC), and some smaller peptides. Gag-derived proteins govern the entire assembly and release of the virus particles, with matrix proteins playing key roles in Gag stability, capsid assembly, transport and budding. Although matrix proteins from different retroviruses appear to perform similar functions and can have similar structural folds, their primary sequences can be very different. This entry represents matrix proteins from delta-retroviruses such as Human T-lymphotropic virus 1 and Human T-cell leukemia virus 2 (HTLV-2), both members of the human oncovirus subclass of retroviruses [, ].; GO: 0005198 structural molecule activity, 0019013 viral nucleocapsid; PDB: 1JVR_A.
Probab=45.11 E-value=8.2 Score=34.10 Aligned_cols=37 Identities=24% Similarity=0.491 Sum_probs=27.8
Q ss_pred CcccHHHHHHHHHHcCCCEEEEceeCCcccCCCCeeeeccchhHHHHHHHHHHc
Q 046146 44 VPAMWPELIQAAKEGGLNTIESYVFWSGHELSPGKYSFEGRYDLVKFVKTVQQA 97 (829)
Q Consensus 44 ~~~~W~d~l~k~ka~GlNtV~~yv~Wn~hEp~~G~~dF~g~~dl~~fl~~a~~~ 97 (829)
.+..|-.-+|.+.. .||.|..|||. +|.+||++|.|-
T Consensus 20 s~hhWLNflQaAyR--------------L~PgPS~~DF~---qLr~flk~alkT 56 (92)
T PF02228_consen 20 STHHWLNFLQAAYR--------------LQPGPSSFDFH---QLRNFLKLALKT 56 (92)
T ss_dssp THHHHHHHHHHHHH--------------SS---STTTHH---HHHHHHHHHHT-
T ss_pred CHHHHHHHHHHHHh--------------cCCCCCcccHH---HHHHHHHHHHcC
Confidence 45668888887765 38999999999 999999999873
No 124
>cd06600 GH31_MGAM-like This family includes the following closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), lysosomal acid alpha-glucosidase (GAA), neutral alpha-glucosidase C (GANC), the alpha subunit of neutral alpha-glucosidase AB (GANAB), and alpha-glucosidase II. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal do
Probab=44.47 E-value=38 Score=37.73 Aligned_cols=73 Identities=10% Similarity=0.135 Sum_probs=52.9
Q ss_pred eeCCCC---CcccHHHHHHHHHHcCCCEEEEceeCCcccCCCCeeeeccc--hhHHHHHHHHHHcCcEEEEecCccccc
Q 046146 38 IHYPRS---VPAMWPELIQAAKEGGLNTIESYVFWSGHELSPGKYSFEGR--YDLVKFVKTVQQAGMYMLLRIGPFVAA 111 (829)
Q Consensus 38 ~Hy~R~---~~~~W~d~l~k~ka~GlNtV~~yv~Wn~hEp~~G~~dF~g~--~dl~~fl~~a~~~GL~VilrpGPyica 111 (829)
+|..|. ..+.-++.++++++.++-.=.+.+-+.+.. .-+.|+|+-. -|..+|++..++.|++|++..=|+|..
T Consensus 13 ~~~sr~~y~~~~~v~~~~~~~~~~~iP~d~i~lD~~~~~-~~~~f~~d~~~FPdp~~~i~~l~~~g~k~~~~~~P~i~~ 90 (317)
T cd06600 13 YHISRYSYYPQDKVVEVVDIMQKEGFPYDVVFLDIHYMD-SYRLFTWDPYRFPEPKKLIDELHKRNVKLVTIVDPGIRV 90 (317)
T ss_pred HHhcCCCCCCHHHHHHHHHHHHHcCCCcceEEEChhhhC-CCCceeechhcCCCHHHHHHHHHHCCCEEEEEeeccccC
Confidence 455554 556678999999999996555544432222 2456776543 389999999999999999999888864
No 125
>TIGR03849 arch_ComA phosphosulfolactate synthase. This model finds the ComA (Coenzyme M biosynthesis A) protein, phosphosulfolactate synthase, in methanogenic archaea. The ComABC pathway is one of at least two pathways to the intermediate sulfopyruvate. Coenzyme M occurs rarely and sporadically outside of the archaea, as for expoxide metabolism in Xanthobacter autotrophicus Py2, but candidate phosphosulfolactate synthases from that and other species occur fall below the cutoff and outside the scope of this model. This model deliberately is narrower in scope than pfam02679.
Probab=43.73 E-value=45 Score=35.81 Aligned_cols=53 Identities=15% Similarity=0.345 Sum_probs=42.4
Q ss_pred cccHHHHHHHHHHcCCCEEEEceeCCcccCCCCeeeeccchhHHHHHHHHHHcCcEEEEecCc
Q 046146 45 PAMWPELIQAAKEGGLNTIESYVFWSGHELSPGKYSFEGRYDLVKFVKTVQQAGMYMLLRIGP 107 (829)
Q Consensus 45 ~~~W~d~l~k~ka~GlNtV~~yv~Wn~hEp~~G~~dF~g~~dl~~fl~~a~~~GL~VilrpGP 107 (829)
....++.++.+|.+||++|++- .|..+++ ..+..++|+.++++||.|+--.|.
T Consensus 70 q~~~~~Yl~~~k~lGf~~IEiS---------~G~~~i~-~~~~~rlI~~~~~~g~~v~~EvG~ 122 (237)
T TIGR03849 70 KGKFDEYLNECDELGFEAVEIS---------DGSMEIS-LEERCNLIERAKDNGFMVLSEVGK 122 (237)
T ss_pred hhhHHHHHHHHHHcCCCEEEEc---------CCccCCC-HHHHHHHHHHHHhCCCeEeccccc
Confidence 3567788889999999999874 4555554 347889999999999999977763
No 126
>cd06599 GH31_glycosidase_Aec37 Glycosyl hydrolase family 31 (GH31) domain of a bacterial protein family represented by Escherichia coli protein Aec37. The gene encoding Aec37 (aec-37) is located within a genomic island (AGI-3) isolated from the extraintestinal avian pathogenic Escherichia coli strain BEN2908. The function of Aec37 and its orthologs is unknown; however, deletion of a region of the genome that includes aec-37 affects the assimilation of seven carbohydrates, decreases growth rate of the strain in minimal medium containing galacturonate or trehalose, and attenuates the virulence of E. coli BEN2908 in chickens. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=43.69 E-value=50 Score=36.72 Aligned_cols=66 Identities=14% Similarity=0.134 Sum_probs=47.3
Q ss_pred cccHHHHHHHHHHcCCCEEEEceeCCcccC---CCCeeeeccc--hhHHHHHHHHHHcCcEEEEecCcccc
Q 046146 45 PAMWPELIQAAKEGGLNTIESYVFWSGHEL---SPGKYSFEGR--YDLVKFVKTVQQAGMYMLLRIGPFVA 110 (829)
Q Consensus 45 ~~~W~d~l~k~ka~GlNtV~~yv~Wn~hEp---~~G~~dF~g~--~dl~~fl~~a~~~GL~VilrpGPyic 110 (829)
.+.-.+.++++++.|+-.=.+.+-+.+..- ....|+|.-. -|..++++..++.|++|++..=|+|+
T Consensus 28 q~~v~~~~~~~r~~~iP~d~i~ld~~~~~~~~~~~~~f~~d~~~FPdp~~mi~~L~~~g~k~~~~i~P~i~ 98 (317)
T cd06599 28 QEALLEFIDKCREHDIPCDSFHLSSGYTSIEGGKRYVFNWNKDRFPDPAAFVAKFHERGIRLAPNIKPGLL 98 (317)
T ss_pred HHHHHHHHHHHHHcCCCeeEEEEeccccccCCCceeeeecCcccCCCHHHHHHHHHHCCCEEEEEeCCccc
Confidence 345678899999999976665554333222 1234666432 38999999999999999999988874
No 127
>cd06416 GH25_Lys1-like Lys-1 is a lysozyme encoded by the Caenorhabditis elegans lys-1 gene. This gene is one of a several lysozyme genes upregulated upon infection by the Gram-negative bacterial pathogen Serratia marcescens. Lys-1 contains a glycosyl hydrolase family 25 (GH25) catalytic domain. This family also includes Lys-5 from Caenorhabditis elegans.
Probab=43.53 E-value=56 Score=33.54 Aligned_cols=87 Identities=16% Similarity=0.296 Sum_probs=54.1
Q ss_pred EEeeCCCCC-----cccHHHHHHHHHHcCCCEEEEceeCCcccCCCCeee--ecc-chhHHHHHHHHHHcCcEEEEecCc
Q 046146 36 ASIHYPRSV-----PAMWPELIQAAKEGGLNTIESYVFWSGHELSPGKYS--FEG-RYDLVKFVKTVQQAGMYMLLRIGP 107 (829)
Q Consensus 36 G~~Hy~R~~-----~~~W~d~l~k~ka~GlNtV~~yv~Wn~hEp~~G~~d--F~g-~~dl~~fl~~a~~~GL~VilrpGP 107 (829)
|.+||+|.. .+..+.-++.++..++.. ...|--.|..++.+. .+- ...+.+|++.++++|.++++-.++
T Consensus 56 G~Yhf~~~~~~~~~~~Qa~~f~~~~~~~~~~~---~~i~lDiE~~~~~~~~~~~~~~~~~~~f~~~~~~~G~~~~iYt~~ 132 (196)
T cd06416 56 DVYFFPCINCCGSAAGQVQTFLQYLKANGIKY---GTVWIDIEQNPCQWSSDVASNCQFLQELVSAAKALGLKVGIYSSQ 132 (196)
T ss_pred ceEEEecCCCCCCHHHHHHHHHHHHHhCCCce---eEEEEEEecCCCCCcCCHHHHHHHHHHHHHHHHHhCCeEEEEcCc
Confidence 889998753 455777788888765432 122334443333322 111 136789999999999999998888
Q ss_pred ccccc----c---CCCCCCcccccc
Q 046146 108 FVAAE----Y---NYGGVPVWLHYI 125 (829)
Q Consensus 108 yicaE----w---~~GG~P~WL~~~ 125 (829)
+--.. . +....|.|+...
T Consensus 133 ~~w~~~~~~~~~~~~~~ypLWiA~Y 157 (196)
T cd06416 133 YDWSQIFGSSYTCNFSSLPLWYAHY 157 (196)
T ss_pred chhccccCCCcCCCcCCCceEecCC
Confidence 52111 1 145688999874
No 128
>PRK08673 3-deoxy-7-phosphoheptulonate synthase; Reviewed
Probab=43.29 E-value=69 Score=36.19 Aligned_cols=76 Identities=18% Similarity=0.296 Sum_probs=56.6
Q ss_pred cEEECCEEeEEEEEEeeCCCC-CcccHHHHHHHHHHcCCCEEEEceeCCcccCCCCeeeecc--chhHHHHHHHHHHcCc
Q 046146 23 SLIIHGRRKLFLSASIHYPRS-VPAMWPELIQAAKEGGLNTIESYVFWSGHELSPGKYSFEG--RYDLVKFVKTVQQAGM 99 (829)
Q Consensus 23 ~~~idGkp~~~~sG~~Hy~R~-~~~~W~d~l~k~ka~GlNtV~~yv~Wn~hEp~~G~~dF~g--~~dl~~fl~~a~~~GL 99 (829)
.+.+.|.+++++.| +=-+ .++.-.+.-+.+|++|.+.++.|+|= |+---|.|.| ..-|.-+.+.+++.||
T Consensus 86 ~~~ig~~~~~~IAG---PCsiEs~e~~~~~A~~lk~~ga~~~r~~~fK----pRTsp~sf~G~g~~gL~~L~~~~~~~Gl 158 (335)
T PRK08673 86 DVEIGGGKPVVIAG---PCSVESEEQILEIARAVKEAGAQILRGGAFK----PRTSPYSFQGLGEEGLKLLAEAREETGL 158 (335)
T ss_pred CEEECCCceEEEEe---cCccCCHHHHHHHHHHHHHhchhhccCcEec----CCCCCcccccccHHHHHHHHHHHHHcCC
Confidence 36777888888988 3333 55666777888889999999999984 4444467776 4567767777889999
Q ss_pred EEEEec
Q 046146 100 YMLLRI 105 (829)
Q Consensus 100 ~Vilrp 105 (829)
.++-.+
T Consensus 159 ~v~tev 164 (335)
T PRK08673 159 PIVTEV 164 (335)
T ss_pred cEEEee
Confidence 888765
No 129
>PRK03705 glycogen debranching enzyme; Provisional
Probab=43.00 E-value=38 Score=41.72 Aligned_cols=55 Identities=24% Similarity=0.368 Sum_probs=36.0
Q ss_pred HHHHHHHcCCCEEEEc-eeCCcccCCC---C-----eee----------ecc-----chhHHHHHHHHHHcCcEEEEec
Q 046146 51 LIQAAKEGGLNTIESY-VFWSGHELSP---G-----KYS----------FEG-----RYDLVKFVKTVQQAGMYMLLRI 105 (829)
Q Consensus 51 ~l~k~ka~GlNtV~~y-v~Wn~hEp~~---G-----~~d----------F~g-----~~dl~~fl~~a~~~GL~Vilrp 105 (829)
.|.-+|++|+|+|+.- |+=...++.. | -|| |.. ..++.++++.|+++||.|||-.
T Consensus 184 ~LdYLk~LGvt~I~L~Pv~~~~~~~~~~~~g~~~ywGYd~~~yfa~d~~ygt~~~~~~~efk~LV~~~H~~GI~VIlDv 262 (658)
T PRK03705 184 MIAYLKQLGITALELLPVAQFASEPRLQRMGLSNYWGYNPLAMFALDPAYASGPETALDEFRDAVKALHKAGIEVILDV 262 (658)
T ss_pred chHHHHHcCCCEEEecCcccCCCcccccccccccccCcccccccccccccCCCCcchHHHHHHHHHHHHHCCCEEEEEE
Confidence 4889999999999853 3311111110 0 011 222 2579999999999999999975
No 130
>cd02742 GH20_hexosaminidase Beta-N-acetylhexosaminidases of glycosyl hydrolase family 20 (GH20) catalyze the removal of beta-1,4-linked N-acetyl-D-hexosamine residues from the non-reducing ends of N-acetyl-beta-D-hexosaminides including N-acetylglucosides and N-acetylgalactosides. These enzymes are broadly distributed in microorganisms, plants and animals, and play roles in various key physiological and pathological processes. These processes include cell structural integrity, energy storage, cellular signaling, fertilization, pathogen defense, viral penetration, the development of carcinomas, inflammatory events and lysosomal storage disorders. The GH20 enzymes include the eukaryotic beta-N-acetylhexosaminidases A and B, the bacterial chitobiases, dispersin B, and lacto-N-biosidase. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by the solvent or the enzyme, but by the substrate itself.
Probab=42.94 E-value=1.2e+02 Score=33.65 Aligned_cols=60 Identities=15% Similarity=0.209 Sum_probs=46.9
Q ss_pred CCcccHHHHHHHHHHcCCCEEEEcee----CCcccC----------------CCCeeeeccchhHHHHHHHHHHcCcEEE
Q 046146 43 SVPAMWPELIQAAKEGGLNTIESYVF----WSGHEL----------------SPGKYSFEGRYDLVKFVKTVQQAGMYML 102 (829)
Q Consensus 43 ~~~~~W~d~l~k~ka~GlNtV~~yv~----Wn~hEp----------------~~G~~dF~g~~dl~~fl~~a~~~GL~Vi 102 (829)
.+.+..++.|+.|-..++|++..++- |.+--+ ..|.|.-+ |+..+++.|++.|+.||
T Consensus 13 ~~~~~lk~~id~ma~~K~N~lhlHl~D~~~~~le~~~~p~l~~~g~~~~~~~~~~~yT~~---di~elv~yA~~rgI~vi 89 (303)
T cd02742 13 LSVESIKRTIDVLARYKINTFHWHLTDDQAWRIESKKFPELAEKGGQINPRSPGGFYTYA---QLKDIIEYAAARGIEVI 89 (303)
T ss_pred cCHHHHHHHHHHHHHhCCcEEEEeeecCCCceEeeCccchhhhhcccccCCCCCCeECHH---HHHHHHHHHHHcCCEEE
Confidence 36778899999999999999999987 755321 12344444 99999999999999998
Q ss_pred Eec
Q 046146 103 LRI 105 (829)
Q Consensus 103 lrp 105 (829)
--+
T Consensus 90 PEi 92 (303)
T cd02742 90 PEI 92 (303)
T ss_pred Eec
Confidence 654
No 131
>COG3623 SgaU Putative L-xylulose-5-phosphate 3-epimerase [Carbohydrate transport and metabolism]
Probab=42.94 E-value=1.1e+02 Score=32.91 Aligned_cols=123 Identities=23% Similarity=0.346 Sum_probs=73.8
Q ss_pred ccHHHHHHHHHHcCCCEEEEceeCCcccCCC--CeeeeccchhHHHHHHHHHHcCcEEEEecCcccccccCCCCCCcccc
Q 046146 46 AMWPELIQAAKEGGLNTIESYVFWSGHELSP--GKYSFEGRYDLVKFVKTVQQAGMYMLLRIGPFVAAEYNYGGVPVWLH 123 (829)
Q Consensus 46 ~~W~d~l~k~ka~GlNtV~~yv~Wn~hEp~~--G~~dF~g~~dl~~fl~~a~~~GL~VilrpGPyicaEw~~GG~P~WL~ 123 (829)
-.|+++|.-+|++||+-|+.-|- |.-+ -+.||+. .....+.+++++.|+ |. |-+| |.
T Consensus 18 ~sW~erl~~AK~~GFDFvEmSvD----EsDeRLaRLDWs~-~er~~l~~ai~etgv----~i-pSmC-----------lS 76 (287)
T COG3623 18 FSWLERLALAKELGFDFVEMSVD----ESDERLARLDWSK-EERLALVNAIQETGV----RI-PSMC-----------LS 76 (287)
T ss_pred CCHHHHHHHHHHcCCCeEEEecc----chHHHHHhcCCCH-HHHHHHHHHHHHhCC----Cc-cchh-----------hh
Confidence 45999999999999999998763 3322 3556662 234566788888887 32 3333 22
Q ss_pred ccCCeeeecCChhHHHHHHHHHHHHHHHHhhccccccCCCcEEEeccccccccchhhcc-----CcHHH---HHHHHHHH
Q 046146 124 YIPGSVFRSYSKPFMSYMQKFMTLIVDMMKKEKLFASQGGPIILAQVENEYQWYEQFYK-----GGKEY---AMWAASMA 195 (829)
Q Consensus 124 ~~p~~~~R~~~~~y~~~~~~~~~~l~~~i~~~~l~~~~gGpII~~QiENEyg~~~~~y~-----~~~~y---~~~l~~~~ 195 (829)
.+...-+-+.|+.-++.....+.+-+..-. .| .|=-+|+- -|.-| |. ..+.| |+|..+++
T Consensus 77 aHRRfPfGS~D~~~r~~aleiM~KaI~LA~--dL------GIRtIQLA-GYDVY---YE~~d~eT~~rFi~g~~~a~~lA 144 (287)
T COG3623 77 AHRRFPFGSKDEATRQQALEIMEKAIQLAQ--DL------GIRTIQLA-GYDVY---YEEADEETRQRFIEGLKWAVELA 144 (287)
T ss_pred hhccCCCCCCCHHHHHHHHHHHHHHHHHHH--Hh------CceeEeec-cceee---eccCCHHHHHHHHHHHHHHHHHH
Confidence 222222568899988887776665554433 23 24455752 23322 21 23344 46666777
Q ss_pred HhCCCc
Q 046146 196 VSQNTG 201 (829)
Q Consensus 196 ~~~g~~ 201 (829)
.++.+.
T Consensus 145 ~~aqV~ 150 (287)
T COG3623 145 ARAQVM 150 (287)
T ss_pred HhhccE
Confidence 776654
No 132
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=42.87 E-value=1.1e+02 Score=30.58 Aligned_cols=102 Identities=13% Similarity=0.063 Sum_probs=61.2
Q ss_pred cHHHHHHHHHHcCCCEEEEcee--CCcccC----CCCeeeeccchhHHHHHHHHHHcCcEEE-EecCcccccccCCCCCC
Q 046146 47 MWPELIQAAKEGGLNTIESYVF--WSGHEL----SPGKYSFEGRYDLVKFVKTVQQAGMYML-LRIGPFVAAEYNYGGVP 119 (829)
Q Consensus 47 ~W~d~l~k~ka~GlNtV~~yv~--Wn~hEp----~~G~~dF~g~~dl~~fl~~a~~~GL~Vi-lrpGPyicaEw~~GG~P 119 (829)
..++..+.+++.|+..+....+ |..... .+.. .-.....+.+.+++|++.|...+ +.+|. .+
T Consensus 28 ~~~~~~~~~~~~gl~i~~~~~~~~~~~~~~~~~~~~~~-r~~~~~~~~~~i~~a~~lg~~~i~~~~g~----------~~ 96 (213)
T PF01261_consen 28 EAEELRRLLEDYGLKIASLHPPTNFWSPDEENGSANDE-REEALEYLKKAIDLAKRLGAKYIVVHSGR----------YP 96 (213)
T ss_dssp HHHHHHHHHHHTTCEEEEEEEEESSSCTGTTSTTSSSH-HHHHHHHHHHHHHHHHHHTBSEEEEECTT----------ES
T ss_pred HHHHHHHHHHHcCCeEEEEecccccccccccccCcchh-hHHHHHHHHHHHHHHHHhCCCceeecCcc----------cc
Confidence 4556777888999996665544 443211 1111 12223489999999999998844 55552 00
Q ss_pred ccccccCCeeeecCChhHHHHHHHHHHHHHHHHhhccccccCCCcEEEecccccccc
Q 046146 120 VWLHYIPGSVFRSYSKPFMSYMQKFMTLIVDMMKKEKLFASQGGPIILAQVENEYQW 176 (829)
Q Consensus 120 ~WL~~~p~~~~R~~~~~y~~~~~~~~~~l~~~i~~~~l~~~~gGpII~~QiENEyg~ 176 (829)
.+ .......-++.+.+.+++|+++.+++ | |.+-+||..+.
T Consensus 97 ~~--------~~~~~~~~~~~~~~~l~~l~~~a~~~------g---v~i~lE~~~~~ 136 (213)
T PF01261_consen 97 SG--------PEDDTEENWERLAENLRELAEIAEEY------G---VRIALENHPGP 136 (213)
T ss_dssp SS--------TTSSHHHHHHHHHHHHHHHHHHHHHH------T---SEEEEE-SSSS
T ss_pred cc--------cCCCHHHHHHHHHHHHHHHHhhhhhh------c---ceEEEecccCc
Confidence 00 01122355677777888888888743 2 44668898775
No 133
>PF02065 Melibiase: Melibiase; InterPro: IPR000111 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycosyl hydrolase family 27, family 31 and family 36 alpha-galactosidases form the glycosyl hydrolase clan GH-D (acc_GH from CAZY), a superfamily of alpha-galactosidases, alpha-N-acetylgalactosaminidases, and isomaltodextranases which are likely to share a common catalytic mechanism and structural topology. Alpha-galactosidase (3.2.1.22 from EC) (melibiase) [] catalyzes the hydrolysis of melibiose into galactose and glucose. In man, the deficiency of this enzyme is the cause of Fabry's disease (X-linked sphingolipidosis). Alpha-galactosidase is present in a variety of organisms. There is a considerable degree of similarity in the sequence of alpha-galactosidase from various eukaryotic species. Escherichia coli alpha-galactosidase (gene melA), which requires NAD and magnesium as cofactors, is not structurally related to the eukaryotic enzymes; by contrast, an Escherichia coli plasmid encoded alpha-galactosidase (gene rafA P16551 from SWISSPROT) [] contains a region of about 50 amino acids which is similar to a domain of the eukaryotic alpha-galactosidases. Alpha-N-acetylgalactosaminidase (3.2.1.49 from EC) [] catalyzes the hydrolysis of terminal non-reducing N-acetyl-D-galactosamine residues in N-acetyl-alpha-D- galactosaminides. In man, the deficiency of this enzyme is the cause of Schindler and Kanzaki diseases. The sequence of this enzyme is highly related to that of the eukaryotic alpha-galactosidases.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1KTC_A 1KTB_A 1UAS_A 3H55_A 3H53_A 3IGU_B 3H54_A 3LRM_A 3LRL_A 3LRK_A ....
Probab=42.86 E-value=1.9e+02 Score=33.47 Aligned_cols=89 Identities=22% Similarity=0.263 Sum_probs=55.6
Q ss_pred eCCCCCcccHHHHHHHHHHcCCCEEEEceeCCcccCCC----Ceeeeccc---hhHHHHHHHHHHcCcEEEEecCccccc
Q 046146 39 HYPRSVPAMWPELIQAAKEGGLNTIESYVFWSGHELSP----GKYSFEGR---YDLVKFVKTVQQAGMYMLLRIGPFVAA 111 (829)
Q Consensus 39 Hy~R~~~~~W~d~l~k~ka~GlNtV~~yv~Wn~hEp~~----G~~dF~g~---~dl~~fl~~a~~~GL~VilrpGPyica 111 (829)
.|+.++.+.-.+.+++++++|++.+.+==-|....... |.+-.+-. .-|..+.+.+++.||..=|+..|-+.+
T Consensus 51 ~~~d~~e~~i~~~a~~~~~~G~e~fviDDGW~~~r~~d~~~~GdW~~~~~kFP~Gl~~l~~~i~~~Gmk~GlW~ePe~v~ 130 (394)
T PF02065_consen 51 YYFDITEEKILELADAAAELGYEYFVIDDGWFGGRDDDNAGLGDWEPDPKKFPNGLKPLADYIHSLGMKFGLWFEPEMVS 130 (394)
T ss_dssp HTTG--HHHHHHHHHHHHHHT-SEEEE-SSSBCTESTTTSTTSBECBBTTTSTTHHHHHHHHHHHTT-EEEEEEETTEEE
T ss_pred cCcCCCHHHHHHHHHHHHHhCCEEEEEcCccccccCCCcccCCceeEChhhhCCcHHHHHHHHHHCCCeEEEEecccccc
Confidence 45667777778889999999997655444486542222 33322110 249999999999999999998887643
Q ss_pred ccC--CCCCCccccccCC
Q 046146 112 EYN--YGGVPVWLHYIPG 127 (829)
Q Consensus 112 Ew~--~GG~P~WL~~~p~ 127 (829)
+=. +-..|.|+...++
T Consensus 131 ~~S~l~~~hPdw~l~~~~ 148 (394)
T PF02065_consen 131 PDSDLYREHPDWVLRDPG 148 (394)
T ss_dssp SSSCHCCSSBGGBTCCTT
T ss_pred chhHHHHhCccceeecCC
Confidence 211 2247999987654
No 134
>PF08531 Bac_rhamnosid_N: Alpha-L-rhamnosidase N-terminal domain; InterPro: IPR013737 This domain is found in bacterial rhamnosidase A and B enzymes and is probably involved in substrate recognition. ; PDB: 2OKX_B.
Probab=42.59 E-value=1e+02 Score=31.19 Aligned_cols=55 Identities=18% Similarity=0.179 Sum_probs=30.8
Q ss_pred ceEEecCcceEEEEEEcCEEEEEEEe---c-c-CCc--eeeEEEeeeecCCCccEEEEEEecCC
Q 046146 489 PVLLIESKGHTLHAFINQELVQGNST---Y-S-TGT--LVFSFTALIPLKAGKNKIDLLSMTVG 545 (829)
Q Consensus 489 ~~L~i~~~~D~~~vfvng~~v~G~~~---~-~-~~~--~~~~~~~~~~l~~g~~~L~ILven~G 545 (829)
+.|.|... .+..+||||+.| |... + . ... .-.++++.--|+.|.|+|.|++-+..
T Consensus 6 A~l~isa~-g~Y~l~vNG~~V-~~~~l~P~~t~y~~~~~Y~tyDVt~~L~~G~N~iav~lg~gw 67 (172)
T PF08531_consen 6 ARLYISAL-GRYELYVNGERV-GDGPLAPGWTDYDKRVYYQTYDVTPYLRPGENVIAVWLGNGW 67 (172)
T ss_dssp -EEEEEEE-SEEEEEETTEEE-EEE--------BTTEEEEEEEE-TTT--TTEEEEEEEEEE--
T ss_pred EEEEEEeC-eeEEEEECCEEe-eCCccccccccCCCceEEEEEeChHHhCCCCCEEEEEEeCCc
Confidence 55666543 477899999999 7543 1 1 111 11234444447789999999997644
No 135
>PRK14582 pgaB outer membrane N-deacetylase; Provisional
Probab=41.88 E-value=71 Score=39.41 Aligned_cols=110 Identities=14% Similarity=0.089 Sum_probs=65.2
Q ss_pred ccHHHHHHHHHHcCCCEEEEc---------------eeCCcccCCCCeeeeccchhHHHHHHHHHHcCcEEEEecCcccc
Q 046146 46 AMWPELIQAAKEGGLNTIESY---------------VFWSGHELSPGKYSFEGRYDLVKFVKTVQQAGMYMLLRIGPFVA 110 (829)
Q Consensus 46 ~~W~d~l~k~ka~GlNtV~~y---------------v~Wn~hEp~~G~~dF~g~~dl~~fl~~a~~~GL~VilrpGPyic 110 (829)
+.-...|+.+|++|+|||=.- .+| -|= ||+-|.= |-. ...++.+.|+.|..|-.||--
T Consensus 334 ~~L~~lLdrlk~~G~ntV~lqafadp~gd~~~~s~yfP~-~~l--p~r~d~f---~~~-aw~l~~r~~v~v~AWmp~~~~ 406 (671)
T PRK14582 334 RNIDVLIQRVKDMQISTVYLQAFADPDGDGLVKELYFPN-RLL--PMRADLF---NRV-AWQLRTRAGVNVYAWMPVLSF 406 (671)
T ss_pred HHHHHHHHHHHHcCCCEEEEEeccCCCCCccccccccCc-ccc--ccccCCc---CHH-HHHHHHhhCCEEEEeccceee
Confidence 346788999999999999654 456 332 3333311 111 235588999999999999952
Q ss_pred c---------ccCCCCCCccccccCCeeeecCChhHHHHHHHHHHHHHHHHhhccccccCCCcEEEeccccc
Q 046146 111 A---------EYNYGGVPVWLHYIPGSVFRSYSKPFMSYMQKFMTLIVDMMKKEKLFASQGGPIILAQVENE 173 (829)
Q Consensus 111 a---------Ew~~GG~P~WL~~~p~~~~R~~~~~y~~~~~~~~~~l~~~i~~~~l~~~~gGpII~~QiENE 173 (829)
. +++..+-|..+. |+--.| =.+|..++++|+..|.+-|+.+ .+|=++|...+
T Consensus 407 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~r--l~P~~pe~r~~i~~i~~dla~~-------~~~dGilf~Dd 467 (671)
T PRK14582 407 DLDPTLPRVKRLDTGEGKAQIH--PEQYRR--LSPFDDRVRAQVGMLYEDLAGH-------AAFDGILFHDD 467 (671)
T ss_pred ccCCCcchhhhccccCCccccC--CCCCcC--CCCCCHHHHHHHHHHHHHHHHh-------CCCceEEeccc
Confidence 1 121112121111 000012 1346788999999999999853 24555565544
No 136
>PF08531 Bac_rhamnosid_N: Alpha-L-rhamnosidase N-terminal domain; InterPro: IPR013737 This domain is found in bacterial rhamnosidase A and B enzymes and is probably involved in substrate recognition. ; PDB: 2OKX_B.
Probab=41.62 E-value=30 Score=34.97 Aligned_cols=23 Identities=26% Similarity=0.404 Sum_probs=18.6
Q ss_pred EEeeCCCccEEEEEcCeecceee
Q 046146 633 GLDMLHMGKGQAWLNGEPIGRYW 655 (829)
Q Consensus 633 ~Ld~~g~gKG~vwVNG~nlGRYW 655 (829)
.|..++.|+=.+||||+.+|+--
T Consensus 7 ~l~isa~g~Y~l~vNG~~V~~~~ 29 (172)
T PF08531_consen 7 RLYISALGRYELYVNGERVGDGP 29 (172)
T ss_dssp EEEEEEESEEEEEETTEEEEEE-
T ss_pred EEEEEeCeeEEEEECCEEeeCCc
Confidence 46777788889999999999753
No 137
>cd06604 GH31_glucosidase_II_MalA Alpha-glucosidase II (alpha-D-glucoside glucohydrolase) is a glycosyl hydrolase family 31 (GH31) enzyme, found in bacteria and plants, which has exo-alpha-1,4-glucosidase and oligo-1,6-glucosidase activities. Alpha-glucosidase II has been characterized in Bacillus thermoamyloliquefaciens where it forms a homohexamer. This family also includes the MalA alpha-glucosidase from Sulfolobus sulfataricus and the AglA alpha-glucosidase from Picrophilus torridus. MalA is part of the carbohydrate-metabolizing machinery that allows this organism to utilize carbohydrates, such as maltose, as the sole carbon and energy source.
Probab=40.98 E-value=49 Score=37.14 Aligned_cols=73 Identities=14% Similarity=0.153 Sum_probs=51.9
Q ss_pred eeCCCC---CcccHHHHHHHHHHcCCCEEEEceeCCcccCCCCeeeeccc--hhHHHHHHHHHHcCcEEEEecCccccc
Q 046146 38 IHYPRS---VPAMWPELIQAAKEGGLNTIESYVFWSGHELSPGKYSFEGR--YDLVKFVKTVQQAGMYMLLRIGPFVAA 111 (829)
Q Consensus 38 ~Hy~R~---~~~~W~d~l~k~ka~GlNtV~~yv~Wn~hEp~~G~~dF~g~--~dl~~fl~~a~~~GL~VilrpGPyica 111 (829)
+|..|. +.+..++.++++++.|+-.=.+.+-+.+.. .-+.|+|+-. -|..++++..++.|++|++..=|+|+.
T Consensus 13 ~~~s~~~y~~~~~v~~~~~~~~~~~iP~d~i~lD~~~~~-~~~~f~~d~~~fPdp~~m~~~l~~~g~~~~~~~~P~v~~ 90 (339)
T cd06604 13 YQQSRWSYYPEEEVREIADEFRERDIPCDAIYLDIDYMD-GYRVFTWDKERFPDPKELIKELHEQGFKVVTIIDPGVKV 90 (339)
T ss_pred HHhcCCCCCCHHHHHHHHHHHHHhCCCcceEEECchhhC-CCCceeeccccCCCHHHHHHHHHHCCCEEEEEEeCceeC
Confidence 455553 556678999999999996544444333332 3445666543 278999999999999999998888853
No 138
>PF08308 PEGA: PEGA domain; InterPro: IPR013229 This domain is found in both archaea and bacteria and has similarity to S-layer (surface layer) proteins. It is named after the characteristic PEGA sequence motif found in this domain. The secondary structure of this domain is predicted to be beta-strands.
Probab=40.67 E-value=30 Score=29.32 Aligned_cols=44 Identities=14% Similarity=0.396 Sum_probs=27.1
Q ss_pred eEEecCcceEEEEEEcCEEEEEEEeccCCceeeEEEeeeecCCCccEEEEEEecCCc
Q 046146 490 VLLIESKGHTLHAFINQELVQGNSTYSTGTLVFSFTALIPLKAGKNKIDLLSMTVGL 546 (829)
Q Consensus 490 ~L~i~~~~D~~~vfvng~~v~G~~~~~~~~~~~~~~~~~~l~~g~~~L~ILven~Gr 546 (829)
.|.|.+.-..|.|||||+++ |... ..+. .+..|.++|.| +.-|.
T Consensus 3 ~l~V~s~p~gA~V~vdg~~~-G~tp-------~~~~---~l~~G~~~v~v--~~~Gy 46 (71)
T PF08308_consen 3 TLRVTSNPSGAEVYVDGKYI-GTTP-------LTLK---DLPPGEHTVTV--EKPGY 46 (71)
T ss_pred EEEEEEECCCCEEEECCEEe-ccCc-------ceee---ecCCccEEEEE--EECCC
Confidence 35666666678999999999 8432 2221 15567666655 44443
No 139
>PF02055 Glyco_hydro_30: O-Glycosyl hydrolase family 30; InterPro: IPR001139 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 30 GH30 from CAZY comprises enzymes with only one known activity; glucosylceramidase (3.2.1.45 from EC). Family 30 encompasses the mammalian glucosylceramidases. Human acid beta-glucosidase (D-glucosyl-N-acylsphingosine glucohydrolase), cleaves the glucosidic bonds of glucosylceramide and synthetic beta-glucosides []. Any one of over 50 different mutations in the gene of glucocerebrosidase have been found to affect activity of this hydrolase, producing variants of Gaucher disease, the most prevalent lysosomal storage disease [, ].; GO: 0004348 glucosylceramidase activity, 0006665 sphingolipid metabolic process, 0007040 lysosome organization, 0005764 lysosome; PDB: 2VT0_B 1NOF_A 2Y24_A 2WCG_B 2J25_A 3GXM_D 1Y7V_B 2NT0_C 3GXF_C 3GXD_A ....
Probab=40.49 E-value=95 Score=36.99 Aligned_cols=164 Identities=12% Similarity=0.195 Sum_probs=87.3
Q ss_pred EEeEEEEEEeeC------CCCCcccHHHHHHHH---HHcCCCEEEEcee--------CCcccCCCCeee---eccc----
Q 046146 29 RRKLFLSASIHY------PRSVPAMWPELIQAA---KEGGLNTIESYVF--------WSGHELSPGKYS---FEGR---- 84 (829)
Q Consensus 29 kp~~~~sG~~Hy------~R~~~~~W~d~l~k~---ka~GlNtV~~yv~--------Wn~hEp~~G~~d---F~g~---- 84 (829)
+++.=++|++=- .+.+++.=++.|+.+ +-+|++.+++.+- +.+-+. |+.|+ |+=.
T Consensus 74 Q~i~GFGga~Tdasa~~l~~l~~~~r~~ll~~~F~~~G~g~s~~R~pIgssDfs~~~Yty~d~-~~D~~l~~Fs~~~~d~ 152 (496)
T PF02055_consen 74 QTIDGFGGAFTDASAYNLQKLSEEQRDELLRSLFSEDGIGYSLLRVPIGSSDFSTRPYTYDDV-PGDFNLSNFSIAREDK 152 (496)
T ss_dssp EE--EEEEE--HHHHHHHHTS-HHHHHHHHHHHHSTTTT---EEEEEES--SSSSS---ST-S-TTHTTTTT---HHHHH
T ss_pred eEEEEEeeeHHHHHHHHHHhCCHHHHHHHHHHHhhcCCceEEEEEeeccCcCCcCCcccccCC-CCCCccccCCccccch
Confidence 556667887742 223433222223322 4579999999885 333222 33221 2211
Q ss_pred hhHHHHHHHHHHc--CcEEEEecCcccccccCCCCCCccccccCCe----eee-cCChhHHHHHHHHHHHHHHHHhhccc
Q 046146 85 YDLVKFVKTVQQA--GMYMLLRIGPFVAAEYNYGGVPVWLHYIPGS----VFR-SYSKPFMSYMQKFMTLIVDMMKKEKL 157 (829)
Q Consensus 85 ~dl~~fl~~a~~~--GL~VilrpGPyicaEw~~GG~P~WL~~~p~~----~~R-~~~~~y~~~~~~~~~~l~~~i~~~~l 157 (829)
..+..+|+.|++. +|+++.-| |. .|+|+.....+ .++ ...+.|.++...||.+.++.++++
T Consensus 153 ~~~ip~ik~a~~~~~~lki~aSp-------WS---pP~WMKtn~~~~g~g~l~g~~~~~y~~~yA~Y~vkfi~aY~~~-- 220 (496)
T PF02055_consen 153 KYKIPLIKEALAINPNLKIFASP-------WS---PPAWMKTNGSMNGGGSLKGSLGDEYYQAYADYFVKFIQAYKKE-- 220 (496)
T ss_dssp TTHHHHHHHHHHHHTT-EEEEEE-------S------GGGBTTSSSCSS-BBSCGTTSHHHHHHHHHHHHHHHHHHCT--
T ss_pred hhHHHHHHHHHHhCCCcEEEEec-------CC---CCHHHccCCcCcCCCccCCCCCchhHHHHHHHHHHHHHHHHHC--
Confidence 2345788888774 57777666 42 79999863322 244 235678888899999998888843
Q ss_pred cccCCCcEEEeccccccccch---hhcc-------CcHHHHH-HHHHHHHhCCC--ccceeeecc
Q 046146 158 FASQGGPIILAQVENEYQWYE---QFYK-------GGKEYAM-WAASMAVSQNT--GVPWIMCQQ 209 (829)
Q Consensus 158 ~~~~gGpII~~QiENEyg~~~---~~y~-------~~~~y~~-~l~~~~~~~g~--~vp~~~~~~ 209 (829)
|=+|=++-+.||..... ..|. ..++|++ +|.-.+++.|+ ++-++..+.
T Consensus 221 ----GI~i~aiT~QNEP~~~~~~~~~~~s~~~t~~~~~~Fi~~~LgP~l~~~~~g~d~kI~~~D~ 281 (496)
T PF02055_consen 221 ----GIPIWAITPQNEPDNGSDPNYPWPSMGWTPEEQADFIKNYLGPALRKAGLGKDVKILIYDH 281 (496)
T ss_dssp ----T--ESEEESSSSCCGGGSTT-SSC--B--HHHHHHHHHHTHHHHHHTSTT-TTSEEEEEEE
T ss_pred ----CCCeEEEeccCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHhcCCCCceEEEEEec
Confidence 44888888889976310 0111 2356664 47778888876 676665553
No 140
>TIGR02100 glgX_debranch glycogen debranching enzyme GlgX. This family consists of the GlgX protein from the E. coli glycogen operon and probable equivalogs from other prokaryotic species. GlgX is not required for glycogen biosynthesis, but instead acts as a debranching enzyme for glycogen catabolism. This model distinguishes GlgX from pullanases and other related proteins that also operate on alpha-1,6-glycosidic linkages. In the wide band between the trusted and noise cutoffs are functionally similar enzymes, mostly from plants, that act similarly but usually are termed isoamylase.
Probab=40.03 E-value=41 Score=41.68 Aligned_cols=56 Identities=21% Similarity=0.375 Sum_probs=36.6
Q ss_pred HHHHHHHcCCCEEEEc-eeCCccc---CCCC-----eee----------e---ccchhHHHHHHHHHHcCcEEEEecC
Q 046146 51 LIQAAKEGGLNTIESY-VFWSGHE---LSPG-----KYS----------F---EGRYDLVKFVKTVQQAGMYMLLRIG 106 (829)
Q Consensus 51 ~l~k~ka~GlNtV~~y-v~Wn~hE---p~~G-----~~d----------F---~g~~dl~~fl~~a~~~GL~VilrpG 106 (829)
.|.-+|++|+|+|+.- |+=...+ ...| -|| | ....+|.++++.|+++||.|||-.=
T Consensus 189 ~LdyLk~LGvtaI~L~Pi~~~~~~~~~~~~~~~~ywGYd~~~y~a~d~~y~~~g~~~efk~LV~~~H~~GI~VIlDvV 266 (688)
T TIGR02100 189 MIDYLKKLGVTAVELLPVHAFIDDRHLLEKGLRNYWGYNTLGFFAPEPRYLASGQVAEFKTMVRALHDAGIEVILDVV 266 (688)
T ss_pred hhHHHHHcCCCEEEECCcccCCccccccccCCCCccCcCcccccccChhhcCCCCHHHHHHHHHHHHHCCCEEEEEEC
Confidence 3778999999999854 4311111 0111 011 2 1246899999999999999999853
No 141
>PF01055 Glyco_hydro_31: Glycosyl hydrolases family 31 ; InterPro: IPR000322 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 31 GH31 from CAZY comprises enzymes with several known activities; alpha-glucosidase (3.2.1.20 from EC), alpha-galactosidase (3.2.1.22 from EC); glucoamylase (3.2.1.3 from EC), sucrase-isomaltase (3.2.1.48 from EC); isomaltase (3.2.1.10 from EC); alpha-xylosidase (3.2.1 from EC); alpha-glucan lyase (4.2.2.13 from EC). Glycoside hydrolase family 31 groups a number of glycosyl hydrolases on the basis of sequence similarities [, , ] An aspartic acid has been implicated [] in the catalytic activity of sucrase, isomaltase, and lysosomal alpha-glucosidase.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3L4U_A 3L4X_A 3L4W_A 3L4V_A 3CTT_A 2QMJ_A 2QLY_A 3L4Z_A 3L4Y_A 3L4T_A ....
Probab=39.66 E-value=42 Score=38.86 Aligned_cols=70 Identities=14% Similarity=0.275 Sum_probs=47.0
Q ss_pred CcccHHHHHHHHHHcCCCEEEEceeCCcccCCCCeeeeccc--hhHHHHHHHHHHcCcEEEEecCcccccccC
Q 046146 44 VPAMWPELIQAAKEGGLNTIESYVFWSGHELSPGKYSFEGR--YDLVKFVKTVQQAGMYMLLRIGPFVAAEYN 114 (829)
Q Consensus 44 ~~~~W~d~l~k~ka~GlNtV~~yv~Wn~hEp~~G~~dF~g~--~dl~~fl~~a~~~GL~VilrpGPyicaEw~ 114 (829)
..+..++.++.+++.|+-.=.+.+-..+.. ..+.|.|+.. -|...+++.+++.|+++++..-|+|.-+-.
T Consensus 41 ~~~~v~~~i~~~~~~~iP~d~~~iD~~~~~-~~~~f~~d~~~FPd~~~~~~~l~~~G~~~~~~~~P~v~~~~~ 112 (441)
T PF01055_consen 41 NQDEVREVIDRYRSNGIPLDVIWIDDDYQD-GYGDFTWDPERFPDPKQMIDELHDQGIKVVLWVHPFVSNDSP 112 (441)
T ss_dssp SHHHHHHHHHHHHHTT--EEEEEE-GGGSB-TTBTT-B-TTTTTTHHHHHHHHHHTT-EEEEEEESEEETTTT
T ss_pred CHHHHHHHHHHHHHcCCCccceeccccccc-cccccccccccccchHHHHHhHhhCCcEEEEEeecccCCCCC
Confidence 456678899999999996655554433322 4445555533 289999999999999999999998876554
No 142
>PF11324 DUF3126: Protein of unknown function (DUF3126); InterPro: IPR021473 This family of proteins with unknown function appear to be restricted to Alphaproteobacteria.
Probab=38.88 E-value=68 Score=27.50 Aligned_cols=31 Identities=16% Similarity=0.389 Sum_probs=23.1
Q ss_pred CcceEEEEEEcCEEEEEEEeccCCc--eeeEEEe
Q 046146 495 SKGHTLHAFINQELVQGNSTYSTGT--LVFSFTA 526 (829)
Q Consensus 495 ~~~D~~~vfvng~~v~G~~~~~~~~--~~~~~~~ 526 (829)
...|.+.||++++++ |++++.... .++.|+.
T Consensus 25 k~~dsaEV~~g~Efi-Gvi~~DedeGe~Sy~f~M 57 (63)
T PF11324_consen 25 KKDDSAEVYIGDEFI-GVIYRDEDEGEVSYNFQM 57 (63)
T ss_pred CCCCceEEEeCCEEE-EEEEeecCCCcEEEEEEE
Confidence 457999999999999 999975432 3455543
No 143
>TIGR00676 fadh2 5,10-methylenetetrahydrofolate reductase, prokaryotic form. This protein is an FAD-containing flavoprotein.
Probab=38.41 E-value=1.2e+02 Score=32.93 Aligned_cols=110 Identities=15% Similarity=0.188 Sum_probs=69.0
Q ss_pred eEEEEEEeeCCCCCcc----cHHHHHHHHHHcCCCEEEEceeCCcccCCCCeeeeccchhHHHHHHHHHHcCcEE--EEe
Q 046146 31 KLFLSASIHYPRSVPA----MWPELIQAAKEGGLNTIESYVFWSGHELSPGKYSFEGRYDLVKFVKTVQQAGMYM--LLR 104 (829)
Q Consensus 31 ~~~~sG~~Hy~R~~~~----~W~d~l~k~ka~GlNtV~~yv~Wn~hEp~~G~~dF~g~~dl~~fl~~a~~~GL~V--ilr 104 (829)
.+-+++..|+.+-|.. .=.++|++-.++|.+.+-|-.+ ||.+ .+.+|++.+++.|+.+ ++.
T Consensus 125 ~f~ig~a~~Peghp~~~~~~~~~~~L~~K~~aGA~f~iTQ~~----------fd~~---~~~~~~~~~~~~gi~~PIi~G 191 (272)
T TIGR00676 125 DFDIGVAAYPEKHPEAPNLEEDIENLKRKVDAGADYAITQLF----------FDND---DYYRFVDRCRAAGIDVPIIPG 191 (272)
T ss_pred CeeEEEEeCCCCCCCCCCHHHHHHHHHHHHHcCCCeEeeccc----------cCHH---HHHHHHHHHHHcCCCCCEecc
Confidence 4678889987753222 1224566666789998888765 4555 7999999999997664 444
Q ss_pred cCcccc-------cccCCCCCCccccccCCeeeecCChhHHHHHHHHHHHHHHHHhh
Q 046146 105 IGPFVA-------AEYNYGGVPVWLHYIPGSVFRSYSKPFMSYMQKFMTLIVDMMKK 154 (829)
Q Consensus 105 pGPyic-------aEw~~GG~P~WL~~~p~~~~R~~~~~y~~~~~~~~~~l~~~i~~ 154 (829)
.-|-.. ++|..-.+|.|+.+.=. +...+....+++.-++..+++..+.+
T Consensus 192 i~p~~s~k~~~~~~~~~Gv~vP~~~~~~l~-~~~~~~~~~~~~gi~~~~~~~~~l~~ 247 (272)
T TIGR00676 192 IMPITNFKQLLRFAERCGAEIPAWLVKRLE-KYDDDPEEVRAVGIEYATDQCEDLIA 247 (272)
T ss_pred cCCcCCHHHHHHHHhccCCCCCHHHHHHHH-hcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 444332 33666678999886210 01112234566677777777777763
No 144
>PRK08645 bifunctional homocysteine S-methyltransferase/5,10-methylenetetrahydrofolate reductase protein; Reviewed
Probab=37.53 E-value=1.2e+02 Score=37.12 Aligned_cols=111 Identities=9% Similarity=0.064 Sum_probs=77.0
Q ss_pred CCEEeEEEEEEeeCCCCCcccHHHHHHHHHHcCCCEEEEceeCCcccCCCCeeeeccchhHHHHHHHHHHcCcEEEEecC
Q 046146 27 HGRRKLFLSASIHYPRSVPAMWPELIQAAKEGGLNTIESYVFWSGHELSPGKYSFEGRYDLVKFVKTVQQAGMYMLLRIG 106 (829)
Q Consensus 27 dGkp~~~~sG~~Hy~R~~~~~W~d~l~k~ka~GlNtV~~yv~Wn~hEp~~G~~dF~g~~dl~~fl~~a~~~GL~VilrpG 106 (829)
++++-+.+++..|+.+.+.+.=-++|.+-.++|...+-|-.+++. + .+.+|++.+++.++.||...-
T Consensus 459 ~~~~~f~ig~A~~P~~~~~~~d~~~L~~Ki~aGAdf~iTQ~~fd~----------~---~~~~~~~~~~~~~vpIi~GIm 525 (612)
T PRK08645 459 GKKTNFSIGGAFNPNVRNLDKEVKRLEKKIEAGADYFITQPVYDE----------E---LIEELLEATKHLGVPIFIGIM 525 (612)
T ss_pred CCCCceeeeEEeCCCCCChHHHHHHHHHHHHcCCCEEEecccCCH----------H---HHHHHHHHHhcCCCCEEEEee
Confidence 445568899999987765554445666667899999999887654 3 788999998877888887777
Q ss_pred ccccc---c-----cCCCCCCcccccc-CCeeeecCChhHHHHHHHHHHHHHHHHh
Q 046146 107 PFVAA---E-----YNYGGVPVWLHYI-PGSVFRSYSKPFMSYMQKFMTLIVDMMK 153 (829)
Q Consensus 107 Pyica---E-----w~~GG~P~WL~~~-p~~~~R~~~~~y~~~~~~~~~~l~~~i~ 153 (829)
|-... + |..-=+|.|+.+. .. .. +...++++.-++..++++.|.
T Consensus 526 Pi~s~k~~~~~~~~~~Gv~vP~~l~~~l~~--~~-d~~~~~~~gv~~a~e~i~~l~ 578 (612)
T PRK08645 526 PLVSYRNAEFLHNEVPGITLPEEIRERMRA--VE-DKEEAREEGVAIARELIDAAR 578 (612)
T ss_pred ecCCHHHHHHHHhCCCCCCCCHHHHHHHHh--cC-CchHHHHHHHHHHHHHHHHHH
Confidence 65433 2 4444578888861 11 11 223567777777777877776
No 145
>KOG2024 consensus Beta-Glucuronidase GUSB (glycosylhydrolase superfamily 2) [Carbohydrate transport and metabolism]
Probab=37.21 E-value=49 Score=36.04 Aligned_cols=47 Identities=21% Similarity=0.309 Sum_probs=36.2
Q ss_pred CCCccEEEEEEEecCCCchhhhccCCCceEEecCcceEEEEEEcCEEE
Q 046146 462 KDTTDYLWYTTSIIFSEDEEFLRTGSQPVLLIESKGHTLHAFINQELV 509 (829)
Q Consensus 462 ~d~~Gyl~Y~T~v~~~~~~~~~~~~~~~~L~i~~~~D~~~vfvng~~v 509 (829)
+|-.|.+||+.++.++.+.. .-.++...|++.+++-.|.|+|||.-+
T Consensus 84 rdfv~~~wyer~v~vpe~w~-~~~~~r~vlr~~s~H~~Aivwvng~~~ 130 (297)
T KOG2024|consen 84 RDFVGLVWYERTVTVPESWT-QDLGKRVVLRIGSAHSYAIVWVNGVDA 130 (297)
T ss_pred ccceeeeEEEEEEEcchhhh-hhcCCeEEEEeecccceeEEEEcceee
Confidence 35678899999998764432 222355679999999999999999876
No 146
>PRK09432 metF 5,10-methylenetetrahydrofolate reductase; Provisional
Probab=36.66 E-value=69 Score=35.50 Aligned_cols=88 Identities=16% Similarity=0.303 Sum_probs=59.7
Q ss_pred HHHHHHHcCCCEEEEceeCCcccCCCCeeeeccchhHHHHHHHHHHcCcE--EEEecCccc-------ccccCCCCCCcc
Q 046146 51 LIQAAKEGGLNTIESYVFWSGHELSPGKYSFEGRYDLVKFVKTVQQAGMY--MLLRIGPFV-------AAEYNYGGVPVW 121 (829)
Q Consensus 51 ~l~k~ka~GlNtV~~yv~Wn~hEp~~G~~dF~g~~dl~~fl~~a~~~GL~--VilrpGPyi-------caEw~~GG~P~W 121 (829)
+|++-.++|-+.+-|-.+ ||.+ .+.+|++.+++.|+. |+...-|-. -++...-++|.|
T Consensus 168 ~Lk~K~~aGA~~~iTQ~~----------Fd~~---~~~~f~~~~~~~Gi~vPIi~GI~pi~s~~~~~~~~~~~Gv~vP~~ 234 (296)
T PRK09432 168 NLKRKVDAGANRAITQFF----------FDVE---SYLRFRDRCVSAGIDVEIVPGILPVSNFKQLKKFADMTNVRIPAW 234 (296)
T ss_pred HHHHHHHcCCCeeecccc----------cchH---HHHHHHHHHHHcCCCCCEEeeccccCCHHHHHHHHHccCCCCCHH
Confidence 455555789988887765 5555 899999999999955 555555532 267777889999
Q ss_pred cccc-CCeeeecCC-hhHHHHHHHHHHHHHHHHhh
Q 046146 122 LHYI-PGSVFRSYS-KPFMSYMQKFMTLIVDMMKK 154 (829)
Q Consensus 122 L~~~-p~~~~R~~~-~~y~~~~~~~~~~l~~~i~~ 154 (829)
|.+. .. . .++ ...+++--+|..++++.+.+
T Consensus 235 l~~~l~~--~-~d~~~~~~~~Gi~~a~e~i~~L~~ 266 (296)
T PRK09432 235 MAKMFDG--L-DDDAETRKLVGASIAMDMVKILSR 266 (296)
T ss_pred HHHHHHh--c-CCCHHHHHHHHHHHHHHHHHHHHH
Confidence 9862 11 1 133 34566667777777777764
No 147
>cd06565 GH20_GcnA-like Glycosyl hydrolase family 20 (GH20) catalytic domain of N-acetyl-beta-D-glucosaminidase (GcnA, also known as BhsA) and related proteins. GcnA is an exoglucosidase which cleaves N-acetyl-beta-D-galactosamine (NAG) and N-acetyl-beta-D-galactosamine residues from 4-methylumbelliferylated (4MU) substrates, as well as cleaving NAG from chito-oligosaccharides (i.e. NAG polymers). In contrast, sulfated forms of the substrate are unable to be cleaved and act instead as mild competitive inhibitors. Additionally, the enzyme is known to be poisoned by several first-row transition metals as well as by mercury. GcnA forms a homodimer with subunits comprised of three domains, an N-terminal zincin-like domain, this central catalytic GH20 domain, and a C-terminal alpha helical domain. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=35.68 E-value=1.8e+02 Score=32.13 Aligned_cols=59 Identities=17% Similarity=0.240 Sum_probs=43.7
Q ss_pred CcccHHHHHHHHHHcCCCEEEEcee----CCcc-cCC--CCeeeeccchhHHHHHHHHHHcCcEEEEec
Q 046146 44 VPAMWPELIQAAKEGGLNTIESYVF----WSGH-ELS--PGKYSFEGRYDLVKFVKTVQQAGMYMLLRI 105 (829)
Q Consensus 44 ~~~~W~d~l~k~ka~GlNtV~~yv~----Wn~h-Ep~--~G~~dF~g~~dl~~fl~~a~~~GL~Vilrp 105 (829)
+.++-++.++.|...|+|.+..|+- +.-+ |.. +|.|.= .++.++++.|++.|+.||--+
T Consensus 15 ~~~~lk~~id~ma~~k~N~l~lhl~D~f~~~~~p~~~~~~~~yT~---~ei~ei~~yA~~~gI~vIPei 80 (301)
T cd06565 15 KVSYLKKLLRLLALLGANGLLLYYEDTFPYEGEPEVGRMRGAYTK---EEIREIDDYAAELGIEVIPLI 80 (301)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEEEecceecCCCcccccCCCCcCH---HHHHHHHHHHHHcCCEEEecC
Confidence 4467889999999999999998863 3222 111 233433 499999999999999998654
No 148
>PLN03059 beta-galactosidase; Provisional
Probab=35.53 E-value=1.2e+02 Score=38.24 Aligned_cols=42 Identities=19% Similarity=0.360 Sum_probs=31.3
Q ss_pred CCceEEEEEEECCCCCC------CeEEeeCCCc-cEEEEEcCeecceee
Q 046146 614 QPLTWYKAVVNEPVGDE------PIGLDMLHMG-KGQAWLNGEPIGRYW 655 (829)
Q Consensus 614 ~~~~wYk~~F~~p~~~d------~~~Ld~~g~g-KG~vwVNG~nlGRYW 655 (829)
.+..||+++|+++.... ...|.+.+.+ .-+|||||+-+|.-+
T Consensus 469 ~dYlwY~t~i~~~~~~~~~~~~~~~~L~v~~~~d~~~vFVNg~~~Gt~~ 517 (840)
T PLN03059 469 TDYLWYMTEVHIDPDEGFLKTGQYPVLTIFSAGHALHVFINGQLAGTVY 517 (840)
T ss_pred CceEEEEEEEeecCCccccccCCCceEEEcccCcEEEEEECCEEEEEEE
Confidence 46899999999875321 1237777764 479999999999865
No 149
>cd06545 GH18_3CO4_chitinase The Bacteroides thetaiotaomicron protein represented by pdb structure 3CO4 is an uncharacterized bacterial member of the family 18 glycosyl hydrolases with homologs found in Flavobacterium, Stigmatella, and Pseudomonas.
Probab=35.12 E-value=1.7e+02 Score=31.31 Aligned_cols=96 Identities=9% Similarity=-0.016 Sum_probs=54.2
Q ss_pred CCeeeec-cchhHHHHHHHHHHcCcEEEEecCcccccccCCCCCCccccccCCeeeecCChhHHHHHHHHHHHHHHHHhh
Q 046146 76 PGKYSFE-GRYDLVKFVKTVQQAGMYMLLRIGPFVAAEYNYGGVPVWLHYIPGSVFRSYSKPFMSYMQKFMTLIVDMMKK 154 (829)
Q Consensus 76 ~G~~dF~-g~~dl~~fl~~a~~~GL~VilrpGPyicaEw~~GG~P~WL~~~p~~~~R~~~~~y~~~~~~~~~~l~~~i~~ 154 (829)
.|...+. ...++..+++.|++.|++|++..|= |..+.+- .+. .++. .-+++++.|+..+++
T Consensus 36 ~G~l~~~~~~~~~~~~~~~~~~~~~kvl~sigg-----~~~~~~~-~~~---------~~~~---~r~~fi~~lv~~~~~ 97 (253)
T cd06545 36 NGTLNANPVRSELNSVVNAAHAHNVKILISLAG-----GSPPEFT-AAL---------NDPA---KRKALVDKIINYVVS 97 (253)
T ss_pred CCeEEecCcHHHHHHHHHHHHhCCCEEEEEEcC-----CCCCcch-hhh---------cCHH---HHHHHHHHHHHHHHH
Confidence 4666664 3357889999999999999999861 2221110 011 2333 335678888888886
Q ss_pred ccccccCCCcEEEeccccccccchhhccCcHHHHHHHHHHHHhCC
Q 046146 155 EKLFASQGGPIILAQVENEYQWYEQFYKGGKEYAMWAASMAVSQN 199 (829)
Q Consensus 155 ~~l~~~~gGpII~~QiENEyg~~~~~y~~~~~y~~~l~~~~~~~g 199 (829)
+.+ . ++.|+=|+..... ..-..+++.|++.+.+.|
T Consensus 98 ~~~----D----GIdiDwE~~~~~~--~~~~~fv~~Lr~~l~~~~ 132 (253)
T cd06545 98 YNL----D----GIDVDLEGPDVTF--GDYLVFIRALYAALKKEG 132 (253)
T ss_pred hCC----C----ceeEEeeccCccH--hHHHHHHHHHHHHHhhcC
Confidence 543 2 3455666643110 011244555666665444
No 150
>COG0366 AmyA Glycosidases [Carbohydrate transport and metabolism]
Probab=35.10 E-value=48 Score=38.48 Aligned_cols=56 Identities=23% Similarity=0.404 Sum_probs=39.7
Q ss_pred HHHHHHHHcCCCEEEEc-ee---CCcccCCCCee-----eeccchhHHHHHHHHHHcCcEEEEec
Q 046146 50 ELIQAAKEGGLNTIESY-VF---WSGHELSPGKY-----SFEGRYDLVKFVKTVQQAGMYMLLRI 105 (829)
Q Consensus 50 d~l~k~ka~GlNtV~~y-v~---Wn~hEp~~G~~-----dF~g~~dl~~fl~~a~~~GL~Vilrp 105 (829)
+.|.-+|.+|+++|-+- ++ -..|.--.-.| .|....|+.++++.|++.||+||+-.
T Consensus 33 ~~LdYl~~LGv~aiwl~Pi~~s~~~~~gY~~~Dy~~id~~~Gt~~d~~~li~~~H~~gi~vi~D~ 97 (505)
T COG0366 33 EKLDYLKELGVDAIWLSPIFESPQADHGYDVSDYTKVDPHFGTEEDFKELVEEAHKRGIKVILDL 97 (505)
T ss_pred HhhhHHHHhCCCEEEeCCCCCCCccCCCccccchhhcCcccCCHHHHHHHHHHHHHCCCEEEEEe
Confidence 78889999999999432 22 11221111000 57788999999999999999999774
No 151
>KOG4729 consensus Galactoside-binding lectin [General function prediction only]
Probab=34.87 E-value=51 Score=35.71 Aligned_cols=77 Identities=6% Similarity=-0.076 Sum_probs=51.2
Q ss_pred EeCCCCCcEEEEEeeecCCCC---CCCCC----cCcCceeCCChhhHHHhhcCCCCceEEEeCCCCCCCCCC-CCCceEE
Q 046146 751 LQCPKNRSISTVKFASFGTPT---GKCGS----FRMGDCHDPNSTSFVEKVCLNKNKCAIELTETNFNKGLC-PDATKTL 822 (829)
Q Consensus 751 L~C~~g~~I~~I~~A~yGr~~---~~C~~----~~~~~C~~~~s~~~V~~~C~Gk~~C~v~a~~~~Fg~DPC-~gt~KyL 822 (829)
.-|++...+ .+..+.+++.. .+|.. ...-.|.....+..+...|.+++.|++...+.-|+ -+| ++-.+|+
T Consensus 147 ~~~~~~~~~-~~e~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ct~~~~~~~~~-~~~~~~~~~~~ 224 (265)
T KOG4729|consen 147 PPRSEIRLE-CREGRRLAVYSAVMKTSPQKDPETEIRHECVSSVLPQLLRQCHAKEGCTLKSDGIKGH-CRHGHLHKVYV 224 (265)
T ss_pred CccCcccch-hhhcccccccccccccCCCCcccCCCCceeecccchhhhhcccccCCceeecCCcccc-ccccceeEEEE
Confidence 344444322 45555666632 24542 22333555566788899999999999999998887 677 5667899
Q ss_pred EEEEEeC
Q 046146 823 AVEVTCS 829 (829)
Q Consensus 823 ~V~y~C~ 829 (829)
.|.+.|.
T Consensus 225 ~~n~e~~ 231 (265)
T KOG4729|consen 225 TVTEEIF 231 (265)
T ss_pred Eeccccc
Confidence 8888763
No 152
>cd06564 GH20_DspB_LnbB-like Glycosyl hydrolase family 20 (GH20) catalytic domain of dispersin B (DspB), lacto-N-biosidase (LnbB) and related proteins. Dispersin B is a soluble beta-N-acetylglucosamidase found in bacteria that hydrolyzes the beta-1,6-linkages of PGA (poly-beta-(1,6)-N-acetylglucosamine), a major component of the extracellular polysaccharide matrix. Lacto-N-biosidase hydrolyzes lacto-N-biose (LNB) type I oligosaccharides at the nonreducing terminus to produce lacto-N-biose as part of the GNB/LNB (galacto-N-biose/lacto-N-biose I) degradation pathway. The lacto-N-biosidase from Bifidobacterium bifidum has this GH20 domain, a carbohydrate binding module 32, and a bacterial immunoglobulin-like domain 2, as well as a YSIRK signal peptide and a G5 membrane anchor at the N and C termini, respectively. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=34.60 E-value=1.8e+02 Score=32.40 Aligned_cols=62 Identities=11% Similarity=0.193 Sum_probs=45.1
Q ss_pred eCCCCCcccHHHHHHHHHHcCCCEEEEcee--CCcc---cC------------------------CCCeeeeccchhHHH
Q 046146 39 HYPRSVPAMWPELIQAAKEGGLNTIESYVF--WSGH---EL------------------------SPGKYSFEGRYDLVK 89 (829)
Q Consensus 39 Hy~R~~~~~W~d~l~k~ka~GlNtV~~yv~--Wn~h---Ep------------------------~~G~~dF~g~~dl~~ 89 (829)
||+ +.+..++.|+.|-..++|++..++- |.+- .| ..|.|. ..++..
T Consensus 12 ~~~--~~~~ik~~id~ma~~K~N~lhlHltD~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~YT---~~di~e 86 (326)
T cd06564 12 KYY--SMDFLKDIIKTMSWYKMNDLQLHLNDNLIFNLDDMSTTVNNATYASDDVKSGNNYYNLTANDGYYT---KEEFKE 86 (326)
T ss_pred CCC--CHHHHHHHHHHHHHcCCceEEEeecCCcccccCCCchhhhhhhhhccccccccccCCCCCCCCccc---HHHHHH
Confidence 554 6788999999999999999998653 3221 11 122232 249999
Q ss_pred HHHHHHHcCcEEEEec
Q 046146 90 FVKTVQQAGMYMLLRI 105 (829)
Q Consensus 90 fl~~a~~~GL~Vilrp 105 (829)
+++.|++.|+.||--+
T Consensus 87 iv~yA~~rgI~vIPEI 102 (326)
T cd06564 87 LIAYAKDRGVNIIPEI 102 (326)
T ss_pred HHHHHHHcCCeEeccC
Confidence 9999999999998544
No 153
>COG3589 Uncharacterized conserved protein [Function unknown]
Probab=34.38 E-value=67 Score=36.16 Aligned_cols=72 Identities=21% Similarity=0.231 Sum_probs=55.4
Q ss_pred EEEEeeCCCCCcccHHHHHHHHHHcCCCEEEEceeCCcccCCCCe-eeeccchhHHHHHHHHHHcCcEEEEecCcccccc
Q 046146 34 LSASIHYPRSVPAMWPELIQAAKEGGLNTIESYVFWSGHELSPGK-YSFEGRYDLVKFVKTVQQAGMYMLLRIGPFVAAE 112 (829)
Q Consensus 34 ~sG~~Hy~R~~~~~W~d~l~k~ka~GlNtV~~yv~Wn~hEp~~G~-~dF~g~~dl~~fl~~a~~~GL~VilrpGPyicaE 112 (829)
++=++.+.|.+.+.=...|++|...|+.-| |=++|.|.+.. --|. -+...++.|++.||+||+-.-|-|--|
T Consensus 4 ~GfSifp~~~~~~~~~~Yi~~~~~~Gf~~I----Ftsl~~~~~~~~~~~~---~~~ell~~Anklg~~vivDvnPsil~~ 76 (360)
T COG3589 4 LGFSIFPNRSPKEKDIAYIDRMHKYGFKRI----FTSLLIPEEDAELYFH---RFKELLKEANKLGLRVIVDVNPSILKE 76 (360)
T ss_pred eeEEeccCCCcchhHHHHHHHHHHcCccce----eeecccCCchHHHHHH---HHHHHHHHHHhcCcEEEEEcCHHHHhh
Confidence 455677778887777888999999999655 55677777642 2233 688899999999999999998876544
No 154
>TIGR02102 pullulan_Gpos pullulanase, extracellular, Gram-positive. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. In contrast, a glycogen debranching enzyme such GlgX, homologous to this family, can release glucose at alpha,1-6 linkages from glycogen first subjected to limit degradation by phosphorylase. Characterized members of this family include a surface-located pullulanase from Streptococcus pneumoniae (PubMed:11083842) and an extracellular bifunctional amylase/pullulanase with C-terminal pullulanase activity (PubMed:8798645).
Probab=34.34 E-value=63 Score=42.13 Aligned_cols=22 Identities=14% Similarity=0.416 Sum_probs=19.9
Q ss_pred hhHHHHHHHHHHcCcEEEEecC
Q 046146 85 YDLVKFVKTVQQAGMYMLLRIG 106 (829)
Q Consensus 85 ~dl~~fl~~a~~~GL~VilrpG 106 (829)
.+|.++++.|+++||.|||-.=
T Consensus 555 ~EfK~LV~alH~~GI~VILDVV 576 (1111)
T TIGR02102 555 AEFKNLINEIHKRGMGVILDVV 576 (1111)
T ss_pred HHHHHHHHHHHHCCCEEEEecc
Confidence 6899999999999999999853
No 155
>PF01120 Alpha_L_fucos: Alpha-L-fucosidase; InterPro: IPR000933 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Family 29 (GH29 from CAZY) encompasses alpha-L-fucosidases (3.2.1.51 from EC) [], which is a lysosomal enzyme responsible for hydrolyzing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Alpha-L-fucosidase is responsible for hydrolysing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Fucosylated glycoconjugates are involved in numerous biological events, making alpha-l-fucosidases, the enzymes responsible for their processing, critically important. Deficiency in alpha-l-fucosidase activity is associated with fucosidosis, a lysosomal storage disorder characterised by rapid neurodegeneration, resulting in severe mental and motor deterioration []. The enzyme is a hexamer and displays a two-domain fold, composed of a catalytic (beta/alpha)(8)-like domain and a C-terminal beta-sandwich domain []. Drosophila melanogaster spermatozoa contains an alpha-l-fucosidase that might be involved in fertilisation by interacting with alpha-l-fucose residues on the micropyle of the eggshell []. In human sperm, membrane-associated alpha-l-fucosidase is stable for extended periods of time, which is made possible by membrane domains and compartmentalisation. These help preserve protein integrity []. ; GO: 0004560 alpha-L-fucosidase activity, 0005975 carbohydrate metabolic process; PDB: 3EYP_B 2ZX6_A 2ZWY_B 2ZX8_B 2WSP_A 2ZXA_A 2ZWZ_B 1ODU_B 1HL9_A 2ZX5_B ....
Probab=32.67 E-value=7.6e+02 Score=27.81 Aligned_cols=54 Identities=11% Similarity=0.123 Sum_probs=37.3
Q ss_pred CCCCChhHHHHHHHHHHHcCcee-eeeeEeecCCCCCCCCCCccccccCCCCcccCCCCCCChhHHHHHHHHHHHHhhcc
Q 046146 253 YPHRPHQDVAFSVARFIQKGGSV-HNYYMYHGGTNFGRTSGDFVTTSYDYDAPIDEYGLPRNPKWGHLKELHEAIMLCEG 331 (829)
Q Consensus 253 ~~~r~~~~~~~~~~~~l~~g~s~-~N~YM~hGGTNfG~~ga~~~~TSYDYdApl~E~G~~~tpKy~~lr~l~~~~~~~~~ 331 (829)
...++++++...+.+..++|+++ +|. +.+.+|.+..+--..||+++.-|+...+
T Consensus 288 ~~~ks~~~li~~l~~~vs~ngnlLLNi-------------------------gP~~dG~ip~~~~~~L~e~G~Wl~~nge 342 (346)
T PF01120_consen 288 EKYKSADELIDILVDSVSRNGNLLLNI-------------------------GPDPDGTIPEEQVERLREIGDWLKVNGE 342 (346)
T ss_dssp CGS--HHHHHHHHHHHHTBTEEEEEEE----------------------------TTSS--HHHHHHHHHHHHHHHHHGG
T ss_pred CCcCCHHHHHHHHHHHhccCceEEEec-------------------------CCCCCCCcCHHHHHHHHHHHHHHHhccc
Confidence 45678899999999999999875 443 4456788878888899999998886543
No 156
>TIGR00433 bioB biotin synthetase. Catalyzes the last step of the biotin biosynthesis pathway.
Probab=32.51 E-value=65 Score=34.99 Aligned_cols=52 Identities=19% Similarity=0.206 Sum_probs=34.2
Q ss_pred HHHHHHHHHcCCCEEEEceeCC--cccCCCCeeeeccchhHHHHHHHHHHcCcEEEE
Q 046146 49 PELIQAAKEGGLNTIESYVFWS--GHELSPGKYSFEGRYDLVKFVKTVQQAGMYMLL 103 (829)
Q Consensus 49 ~d~l~k~ka~GlNtV~~yv~Wn--~hEp~~G~~dF~g~~dl~~fl~~a~~~GL~Vil 103 (829)
++.+++||++|++.|...+--+ .++..-+..+|+ +..+.++.++++|+.|..
T Consensus 123 ~e~l~~Lk~aG~~~v~i~~E~~~~~~~~i~~~~s~~---~~~~ai~~l~~~Gi~v~~ 176 (296)
T TIGR00433 123 PEQAKRLKDAGLDYYNHNLDTSQEFYSNIISTHTYD---DRVDTLENAKKAGLKVCS 176 (296)
T ss_pred HHHHHHHHHcCCCEEEEcccCCHHHHhhccCCCCHH---HHHHHHHHHHHcCCEEEE
Confidence 5678889999999988876511 111111223444 666778999999998643
No 157
>cd00537 MTHFR Methylenetetrahydrofolate reductase (MTHFR). 5,10-Methylenetetrahydrofolate is reduced to 5-methyltetrahydrofolate by methylenetetrahydrofolate reductase, a cytoplasmic, NAD(P)-dependent enzyme. 5-methyltetrahydrofolate is utilized by methionine synthase to convert homocysteine to methionine. The enzymatic mechanism is a ping-pong bi-bi mechanism, in which NAD(P)+ release precedes the binding of methylenetetrahydrofolate and the acceptor is free FAD. The family includes the 5,10-methylenetetrahydrofolate reductase EC:1.7.99.5 from prokaryotes and methylenetetrahydrofolate reductase EC: 1.5.1.20 from eukaryotes. The bacterial enzyme is a homotetramer and NADH is the preferred reductant while the eukaryotic enzyme is a homodimer and NADPH is the preferred reductant. In humans, there are several clinically significant mutations in MTHFR that result in hyperhomocysteinemia, which is a risk factor for the development of cardiovascular disease.
Probab=32.12 E-value=1.4e+02 Score=32.37 Aligned_cols=104 Identities=14% Similarity=0.192 Sum_probs=64.3
Q ss_pred EeeCCCCCcccHHHHHHHHHHcCCCEEEEceeCCcccCCCCeeeeccchhHHHHHHHHHHcC--cEEEEecCcccc----
Q 046146 37 SIHYPRSVPAMWPELIQAAKEGGLNTIESYVFWSGHELSPGKYSFEGRYDLVKFVKTVQQAG--MYMLLRIGPFVA---- 110 (829)
Q Consensus 37 ~~Hy~R~~~~~W~d~l~k~ka~GlNtV~~yv~Wn~hEp~~G~~dF~g~~dl~~fl~~a~~~G--L~VilrpGPyic---- 110 (829)
+.|+...+.+.=.++|++=.++|.+.+-|-.+.+ .+ .+.+|++.|++.| +.||+..-|-..
T Consensus 138 e~hp~~~~~~~~~~~L~~Ki~aGA~f~iTQ~~fd----------~~---~~~~~~~~~~~~gi~vPIi~GI~p~~s~~~l 204 (274)
T cd00537 138 EGHPEAPSLEEDIKRLKRKVDAGADFIITQLFFD----------ND---AFLRFVDRCRAAGITVPIIPGIMPLTSYKQA 204 (274)
T ss_pred CcCCCCCCHHHHHHHHHHHHHCCCCEEeeccccc----------HH---HHHHHHHHHHHcCCCCCEEeeccccCCHHHH
Confidence 4444443333333445444566999999987644 33 7999999999998 557766666543
Q ss_pred ---cccCCCCCCccccccCCeeeecCChhHHHHHHHHHHHHHHHHhh
Q 046146 111 ---AEYNYGGVPVWLHYIPGSVFRSYSKPFMSYMQKFMTLIVDMMKK 154 (829)
Q Consensus 111 ---aEw~~GG~P~WL~~~p~~~~R~~~~~y~~~~~~~~~~l~~~i~~ 154 (829)
++|-.-++|.|+.+.-.- ...+....+++-.++..++++.+.+
T Consensus 205 ~~~~~~~Gv~vP~~~~~~l~~-~~~~~~~~~~~g~~~~~~l~~~l~~ 250 (274)
T cd00537 205 KRFAKLCGVEIPDWLLERLEK-LKDDAEAVRAEGIEIAAELCDELLE 250 (274)
T ss_pred HHHHHhhCCCCCHHHHHHHHh-cCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 456666789999862100 0122234456667777777777763
No 158
>PF04914 DltD_C: DltD C-terminal region; InterPro: IPR006998 The dlt operon (dltA to dltD) of Lactobacillus rhamnosus 7469 encodes four proteins responsible for the esterification of lipoteichoic acid (LTA) by D-alanine. These esters play an important role in controlling the net anionic charge of the poly (GroP) moiety of LTA. DltA and DltC encode the D-alanine-D-alanyl carrier protein ligase (Dcl) and D-alanyl carrier protein (Dcp), respectively. Whereas the functions of DltA and DltC are defined, the functions of DltB and DltD are unknown. In vitro assays showed that DltD bound Dcp for ligation with D-alanine by Dcl in the presence of ATP. In contrast, the homologue of Dcp, the Escherichia coli acyl carrier protein (ACP), involved in fatty acid biosynthesis, was not bound to DltD and thus was not ligated with D-alanine. DltD also catalyzed the hydrolysis of the mischarged D-alanyl-ACP. The hydrophobic N-terminal sequence of DltD was required for anchoring the protein in the membrane. It is hypothesized that this membrane-associated DltD facilitates the binding of Dcp and Dcl for ligation of Dcp with D-alanine and that the resulting D-alanyl-Dcp is translocated to the primary site of D-alanylation []. These sequences contain the C-terminal region of DltD.; PDB: 3BMA_C.
Probab=32.01 E-value=98 Score=30.19 Aligned_cols=50 Identities=24% Similarity=0.436 Sum_probs=31.5
Q ss_pred hHHHHHHHHHHcCcEEEEecCcccccccC-CCCCCccccccCCeeeecCChhHHHHHHHHHHHHHHHHhh
Q 046146 86 DLVKFVKTVQQAGMYMLLRIGPFVAAEYN-YGGVPVWLHYIPGSVFRSYSKPFMSYMQKFMTLIVDMMKK 154 (829)
Q Consensus 86 dl~~fl~~a~~~GL~VilrpGPyicaEw~-~GG~P~WL~~~p~~~~R~~~~~y~~~~~~~~~~l~~~i~~ 154 (829)
||..||+.|++.|+.|++=.-| +++.|. +-|+| ++.-+.++++|-.++++
T Consensus 37 Dl~l~L~~~k~~g~~~lfVi~P-vNg~wydytG~~------------------~~~r~~~y~kI~~~~~~ 87 (130)
T PF04914_consen 37 DLQLLLDVCKELGIDVLFVIQP-VNGKWYDYTGLS------------------KEMRQEYYKKIKYQLKS 87 (130)
T ss_dssp HHHHHHHHHHHTT-EEEEEE-----HHHHHHTT--------------------HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCceEEEecC-CcHHHHHHhCCC------------------HHHHHHHHHHHHHHHHH
Confidence 9999999999999998766644 455542 22222 24556778888888773
No 159
>PRK09875 putative hydrolase; Provisional
Probab=31.72 E-value=1.7e+02 Score=32.51 Aligned_cols=89 Identities=11% Similarity=0.059 Sum_probs=57.6
Q ss_pred eEEeeCCcEEECCEEeEEEEEEeeCCCCCcccHHHHHHHHHHcCCCEEEEceeCCcccCCCCeeeeccchhHHHHHHHHH
Q 046146 16 NVTYDHRSLIIHGRRKLFLSASIHYPRSVPAMWPELIQAAKEGGLNTIESYVFWSGHELSPGKYSFEGRYDLVKFVKTVQ 95 (829)
Q Consensus 16 ~v~~d~~~~~idGkp~~~~sG~~Hy~R~~~~~W~d~l~k~ka~GlNtV~~yv~Wn~hEp~~G~~dF~g~~dl~~fl~~a~ 95 (829)
.+++-+..++++-.++. +......-..+.=...|+.+|++|.+||=--.+..+ .||...+.++++
T Consensus 7 G~tl~HEHl~~~~~~~~---~~~~~~l~~~~~~~~el~~~~~~Gg~tiVd~T~~g~------------GRd~~~l~~is~ 71 (292)
T PRK09875 7 GYTLAHEHLHIDLSGFK---NNVDCRLDQYAFICQEMNDLMTRGVRNVIEMTNRYM------------GRNAQFMLDVMR 71 (292)
T ss_pred CcceecCCeEecChhhc---CCcccccccHHHHHHHHHHHHHhCCCeEEecCCCcc------------CcCHHHHHHHHH
Confidence 56677777777653211 111111112333445688889999988732222222 469999999999
Q ss_pred HcCcEEEEecCcccccccCCCCCCccccc
Q 046146 96 QAGMYMLLRIGPFVAAEYNYGGVPVWLHY 124 (829)
Q Consensus 96 ~~GL~VilrpGPyicaEw~~GG~P~WL~~ 124 (829)
+-|+.||.-.|-|.-.. +|.|+..
T Consensus 72 ~tgv~Iv~~TG~y~~~~-----~p~~~~~ 95 (292)
T PRK09875 72 ETGINVVACTGYYQDAF-----FPEHVAT 95 (292)
T ss_pred HhCCcEEEcCcCCCCcc-----CCHHHhc
Confidence 99999999999985322 5788874
No 160
>KOG0683 consensus Glutamine synthetase [Amino acid transport and metabolism]
Probab=31.15 E-value=59 Score=36.85 Aligned_cols=45 Identities=18% Similarity=0.541 Sum_probs=37.6
Q ss_pred cCCCCeeeec----------cchhHHHHH--HHHHHcCcEEEEecCcccccccCCCCC
Q 046146 73 ELSPGKYSFE----------GRYDLVKFV--KTVQQAGMYMLLRIGPFVAAEYNYGGV 118 (829)
Q Consensus 73 Ep~~G~~dF~----------g~~dl~~fl--~~a~~~GL~VilrpGPyicaEw~~GG~ 118 (829)
|-.||+|.|+ .+.+..|++ +.|++.|+-+-+-|=| +-+.|+..|-
T Consensus 203 EvmPgQwEfqvGp~~GI~~gD~lw~aR~il~rVae~~Gviasf~pKp-~~g~WngaG~ 259 (380)
T KOG0683|consen 203 EVMPGQWEFQVGPCEGISMGDQLWMARYILHRVAEKFGVIASFDPKP-ILGDWNGAGC 259 (380)
T ss_pred cccCceeEEeecchhcccchhhHHHHHHHHHHHHHHhCeeEEecCCC-CCCcccCccc
Confidence 4789999997 246777777 8899999999999987 9999998664
No 161
>cd06597 GH31_transferase_CtsY CtsY (cyclic tetrasaccharide-synthesizing enzyme Y) is a bacterial 3-alpha-isomaltosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsZ. CtsY and CtsZ both have a glycosyl hydrolase family 31 (GH31) catalytic domain. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=31.10 E-value=95 Score=35.00 Aligned_cols=73 Identities=14% Similarity=0.228 Sum_probs=50.0
Q ss_pred eeCCCC---CcccHHHHHHHHHHcCCCEEEEce----------eCCcccC------C---CCeeeeccc---hhHHHHHH
Q 046146 38 IHYPRS---VPAMWPELIQAAKEGGLNTIESYV----------FWSGHEL------S---PGKYSFEGR---YDLVKFVK 92 (829)
Q Consensus 38 ~Hy~R~---~~~~W~d~l~k~ka~GlNtV~~yv----------~Wn~hEp------~---~G~~dF~g~---~dl~~fl~ 92 (829)
+|..|. ..+.-++.++++++.|+..=-+++ .|+...- . =+.++|... -|..++++
T Consensus 13 ~~~sr~~Y~~~~ev~~v~~~~~~~~iP~d~i~lD~W~~~~~~~~w~d~~y~~~~~~~~~~~~~~~f~~~~~FPdp~~mi~ 92 (340)
T cd06597 13 LWMSANEWDTQAEVMRQMDAHEEHGIPVTVVVIEQWSDEATFYVFNDAQYTPKDGGAPLSYDDFSFPVEGRWPNPKGMID 92 (340)
T ss_pred hhhhccCCCCHHHHHHHHHHHHHcCCCeeEEEEecccCcceeeeeccchhcccccCCcceecccccCccccCCCHHHHHH
Confidence 566664 455678899999999997655544 2442211 1 133344321 28999999
Q ss_pred HHHHcCcEEEEecCcccc
Q 046146 93 TVQQAGMYMLLRIGPFVA 110 (829)
Q Consensus 93 ~a~~~GL~VilrpGPyic 110 (829)
..++.|++|+|..=|+|.
T Consensus 93 ~Lh~~G~kv~l~v~P~i~ 110 (340)
T cd06597 93 ELHEQGVKVLLWQIPIIK 110 (340)
T ss_pred HHHHCCCEEEEEecCccc
Confidence 999999999999888885
No 162
>PLN02784 alpha-amylase
Probab=30.65 E-value=1e+02 Score=39.03 Aligned_cols=58 Identities=16% Similarity=0.109 Sum_probs=40.1
Q ss_pred HHHHHHHHHcCCCEEEEceeCCcccC---CCCe-ee----eccchhHHHHHHHHHHcCcEEEEecC
Q 046146 49 PELIQAAKEGGLNTIESYVFWSGHEL---SPGK-YS----FEGRYDLVKFVKTVQQAGMYMLLRIG 106 (829)
Q Consensus 49 ~d~l~k~ka~GlNtV~~yv~Wn~hEp---~~G~-~d----F~g~~dl~~fl~~a~~~GL~VilrpG 106 (829)
.+++..++++|+++|-+.=+.....+ .|.. |+ |....+|.++++.|+++||.||+-.=
T Consensus 524 ~ekldyL~~LG~taIWLpP~~~s~s~~GY~p~D~y~lds~yGT~~ELk~LI~a~H~~GIkVIlDiV 589 (894)
T PLN02784 524 GEKAAELSSLGFTVVWLPPPTESVSPEGYMPKDLYNLNSRYGTIDELKDLVKSFHEVGIKVLGDAV 589 (894)
T ss_pred HHHHHHHHHhCCCEEEeCCCCCCCCCCCcCcccccccCcCcCCHHHHHHHHHHHHHCCCEEEEEEC
Confidence 35677889999999987754322211 1111 11 33457999999999999999998753
No 163
>cd06418 GH25_BacA-like BacA is a bacterial lysin from Enterococcus faecalis that degrades bacterial cell walls by catalyzing the hydrolysis of 1,4-beta-linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues. BacA is homologous to the YbfG and YkuG lysins of Bacillus subtilis. BacA has a C-terminal catalytic glycosyl hydrolase family 25 (GH25) domain and an N-terminal peptidoglycan-binding domain comprised of three alpha helices which is similar to a domain found in matrixins.
Probab=30.18 E-value=2.3e+02 Score=29.83 Aligned_cols=89 Identities=12% Similarity=0.141 Sum_probs=63.4
Q ss_pred CcccHHHHHHHHHHcCCCEEEEceeCCcccCCCCeeeec-cchhHHHHHHHHHHcCcEEEEecCcccccccCCCCCCccc
Q 046146 44 VPAMWPELIQAAKEGGLNTIESYVFWSGHELSPGKYSFE-GRYDLVKFVKTVQQAGMYMLLRIGPFVAAEYNYGGVPVWL 122 (829)
Q Consensus 44 ~~~~W~d~l~k~ka~GlNtV~~yv~Wn~hEp~~G~~dF~-g~~dl~~fl~~a~~~GL~VilrpGPyicaEw~~GG~P~WL 122 (829)
.+.+++..++.++++|+..+-+|..... ....+..+ |..|-..-+++|+++|+ .+| -|-++
T Consensus 50 ~k~lt~~e~~~i~~~Gl~~~pIyq~~~~---~~~~~~~~~G~~dA~~A~~~A~~lG~----p~g-----------s~IYf 111 (212)
T cd06418 50 SKNLTATELETITAAGLKVFPIYQGGGY---SLDYFGYEQGVKDARDAVAAARALGF----PPG-----------TIIYF 111 (212)
T ss_pred CCCCCHHHHHHHHHCCCEEEEEEECCCc---cccccCHHHHHHHHHHHHHHHHHcCC----CCC-----------CEEEE
Confidence 5788999999999999999999998766 12222222 67889999999999988 233 33344
Q ss_pred cccCCeeeecCChhHHHHHHHHHHHHHHHHhh
Q 046146 123 HYIPGSVFRSYSKPFMSYMQKFMTLIVDMMKK 154 (829)
Q Consensus 123 ~~~p~~~~R~~~~~y~~~~~~~~~~l~~~i~~ 154 (829)
.-+.+. .+..+...+..||+.+...|..
T Consensus 112 avD~d~----~~~~~~~~v~~Y~~a~~~~l~~ 139 (212)
T cd06418 112 AVDFDA----LDDEVTEVILPYFRGWNDALHE 139 (212)
T ss_pred EeecCC----CcchhHHHHHHHHHHHHHHHHh
Confidence 322221 2233778899999999999874
No 164
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=30.05 E-value=40 Score=35.38 Aligned_cols=16 Identities=25% Similarity=0.511 Sum_probs=14.2
Q ss_pred ccEEEEEcCeecceee
Q 046146 640 GKGQAWLNGEPIGRYW 655 (829)
Q Consensus 640 gKG~vwVNG~nlGRYW 655 (829)
.+|.|||||++|.|.=
T Consensus 55 t~G~i~~~~~dl~~l~ 70 (223)
T COG2884 55 TRGKILVNGHDLSRLK 70 (223)
T ss_pred CCceEEECCeeccccc
Confidence 6799999999999973
No 165
>cd08560 GDPD_EcGlpQ_like_1 Glycerophosphodiester phosphodiesterase domain similar to Escherichia coli periplasmic phosphodiesterase (GlpQ) include uncharacterized proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of uncharacterized glycerophosphodiester phosphodiesterases (GP-GDE, EC 3.1.4.46) and their hypothetical homologs. Members in this subfamily show high sequence similarity to Escherichia coli periplasmic phosphodiesterase GlpQ, which catalyzes the Ca2+-dependent degradation of periplasmic glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=29.94 E-value=1.3e+02 Score=34.31 Aligned_cols=53 Identities=15% Similarity=0.248 Sum_probs=36.2
Q ss_pred cHHHHHHHHHHcCCCEEEEceeCCcccCCCCeeeeccchhHHHHHHHHHHcCcEEEEec
Q 046146 47 MWPELIQAAKEGGLNTIESYVFWSGHELSPGKYSFEGRYDLVKFVKTVQQAGMYMLLRI 105 (829)
Q Consensus 47 ~W~d~l~k~ka~GlNtV~~yv~Wn~hEp~~G~~dF~g~~dl~~fl~~a~~~GL~Vilrp 105 (829)
.|...++++++.|++.|.-+...-.-... .+.+ -...+++.|+++||.|+.++
T Consensus 246 ~~~~~l~~i~a~~a~~i~P~~~~l~~~~~--~~~~----~~~~~v~~Ah~~GL~V~~WT 298 (356)
T cd08560 246 TWSPSMDELKARGVNIIAPPIWMLVDPDE--NGKI----VPSEYAKAAKAAGLDIITWT 298 (356)
T ss_pred cHHHHHHHHHhCCccEecCchhhcccccc--cccc----CCHHHHHHHHHcCCEEEEEE
Confidence 48888999999999877655422221111 1111 34688999999999999776
No 166
>cd06563 GH20_chitobiase-like The chitobiase of Serratia marcescens is a beta-N-1,4-acetylhexosaminidase with a glycosyl hydrolase family 20 (GH20) domain that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. This GH20 domain family includes an N-acetylglucosamidase (GlcNAcase A) from Pseudoalteromonas piscicida and an N-acetylhexosaminidase (SpHex) from Streptomyces plicatus. SpHex lacks the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=29.85 E-value=2.1e+02 Score=32.40 Aligned_cols=59 Identities=15% Similarity=0.124 Sum_probs=45.0
Q ss_pred CcccHHHHHHHHHHcCCCEEEEcee----CCccc----------------------------CCCCeeeeccchhHHHHH
Q 046146 44 VPAMWPELIQAAKEGGLNTIESYVF----WSGHE----------------------------LSPGKYSFEGRYDLVKFV 91 (829)
Q Consensus 44 ~~~~W~d~l~k~ka~GlNtV~~yv~----Wn~hE----------------------------p~~G~~dF~g~~dl~~fl 91 (829)
+.+..++.|..|...++|+...++- |.+-- +..|.|-- .|+..++
T Consensus 16 ~~~~ik~~Id~ma~~K~N~lhlHltDdq~~rle~~~~P~Lt~~ga~~~~~~~~~~~~~~~~~~~~~~YT~---~di~eiv 92 (357)
T cd06563 16 PVDEVKRFIDLMALYKLNVFHWHLTDDQGWRIEIKKYPKLTEVGAWRGPTEIGLPQGGGDGTPYGGFYTQ---EEIREIV 92 (357)
T ss_pred CHHHHHHHHHHHHHhccceEEEeeecCCCceecccCcchhhhcccccCcccccccccccCCCccCceECH---HHHHHHH
Confidence 5788899999999999999998873 43211 11234433 4999999
Q ss_pred HHHHHcCcEEEEec
Q 046146 92 KTVQQAGMYMLLRI 105 (829)
Q Consensus 92 ~~a~~~GL~Vilrp 105 (829)
+.|++.|+.||--+
T Consensus 93 ~yA~~rgI~VIPEI 106 (357)
T cd06563 93 AYAAERGITVIPEI 106 (357)
T ss_pred HHHHHcCCEEEEec
Confidence 99999999999654
No 167
>COG1891 Uncharacterized protein conserved in archaea [Function unknown]
Probab=29.78 E-value=18 Score=36.98 Aligned_cols=65 Identities=18% Similarity=0.343 Sum_probs=42.7
Q ss_pred EEEEEEeeCCCC---CcccHHHHHHHHHHcCCCE--EEEceeCCcccCCCCeeeeccchhHHHHHHHHHHcCcEEEEe
Q 046146 32 LFLSASIHYPRS---VPAMWPELIQAAKEGGLNT--IESYVFWSGHELSPGKYSFEGRYDLVKFVKTVQQAGMYMLLR 104 (829)
Q Consensus 32 ~~~sG~~Hy~R~---~~~~W~d~l~k~ka~GlNt--V~~yv~Wn~hEp~~G~~dF~g~~dl~~fl~~a~~~GL~Vilr 104 (829)
.+-+|--.|.|+ .|-.-+ +-+.++|.+. |.|-|- --.--|||-...+|..|.++|+++||.+-|.
T Consensus 117 VVAaGYaDa~Rvgsv~Pl~~P---~vaa~ag~DvaMvDTaiK-----DGkslFdfm~~e~l~eFvd~Ah~hGL~~AlA 186 (235)
T COG1891 117 VVAAGYADAHRVGSVSPLLLP---EVAAEAGADVAMVDTAIK-----DGKSLFDFMDEEELEEFVDLAHEHGLEVALA 186 (235)
T ss_pred EEeccccchhhccCcCccccH---HHHHhcCCCEEEEecccc-----cchhHHhhhcHHHHHHHHHHHHHcchHHHhc
Confidence 445565666674 333333 2356678774 445441 1123599998899999999999999987664
No 168
>cd06568 GH20_SpHex_like A subgroup of the Glycosyl hydrolase family 20 (GH20) catalytic domain found in proteins similar to the N-acetylhexosaminidase from Streptomyces plicatus (SpHex). SpHex catalyzes the hydrolysis of N-acetyl-beta-hexosaminides. An Asp residue within the active site plays a critical role in substrate-assisted catalysis by orienting the 2-acetamido group and stabilizing the transition state. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself. Proteins belonging to this subgroup lack the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases.
Probab=29.29 E-value=1e+02 Score=34.71 Aligned_cols=59 Identities=19% Similarity=0.143 Sum_probs=46.0
Q ss_pred CcccHHHHHHHHHHcCCCEEEEcee----CCcccCC------CC-----------eeeeccchhHHHHHHHHHHcCcEEE
Q 046146 44 VPAMWPELIQAAKEGGLNTIESYVF----WSGHELS------PG-----------KYSFEGRYDLVKFVKTVQQAGMYML 102 (829)
Q Consensus 44 ~~~~W~d~l~k~ka~GlNtV~~yv~----Wn~hEp~------~G-----------~~dF~g~~dl~~fl~~a~~~GL~Vi 102 (829)
+.+..++.|+.|-..++|++..++- |.+.-+. .| .|. ..|+.++++.|++.|+.||
T Consensus 16 ~~~~lk~~id~ma~~KlN~lhlHLtD~~~~rle~~~~P~lt~~ga~~~~~~~~~~~YT---~~di~elv~yA~~rgI~vI 92 (329)
T cd06568 16 TVAEVKRYIDLLALYKLNVLHLHLTDDQGWRIEIKSWPKLTEIGGSTEVGGGPGGYYT---QEDYKDIVAYAAERHITVV 92 (329)
T ss_pred CHHHHHHHHHHHHHhCCcEEEEEeecCCcceeeecCcccccccccccccCCCCCCcCC---HHHHHHHHHHHHHcCCEEE
Confidence 7788999999999999999999984 6543221 22 233 3499999999999999999
Q ss_pred Eec
Q 046146 103 LRI 105 (829)
Q Consensus 103 lrp 105 (829)
--+
T Consensus 93 PEi 95 (329)
T cd06568 93 PEI 95 (329)
T ss_pred Eec
Confidence 654
No 169
>PF08924 DUF1906: Domain of unknown function (DUF1906); InterPro: IPR015020 This entry represents a family of uncharacterised hypothetical bacterial proteins. ; PDB: 1SFS_A.
Probab=28.73 E-value=1.5e+02 Score=28.88 Aligned_cols=87 Identities=14% Similarity=0.120 Sum_probs=46.2
Q ss_pred CcccHHHHHHHHHHcCCCEEEEceeCCcccCCCCeeeec-----cchhHHHHHHHHHHcCcEEEEecCcccccccCCCCC
Q 046146 44 VPAMWPELIQAAKEGGLNTIESYVFWSGHELSPGKYSFE-----GRYDLVKFVKTVQQAGMYMLLRIGPFVAAEYNYGGV 118 (829)
Q Consensus 44 ~~~~W~d~l~k~ka~GlNtV~~yv~Wn~hEp~~G~~dF~-----g~~dl~~fl~~a~~~GL~VilrpGPyicaEw~~GG~ 118 (829)
.+.+.+..++.|+++|+..+-+|..... ...+|+ |..|-..-+..|++.|+. . |-
T Consensus 36 ~k~Lt~~e~~~i~~~Gl~i~pIyq~~~~-----~~~~~~~~~~~G~~dA~~A~~~A~~lG~p----~-----------gt 95 (136)
T PF08924_consen 36 QKNLTAGEVQDIRAAGLRIFPIYQGGGR-----ETSDFTYGYAQGVADARDAVAAARALGFP----A-----------GT 95 (136)
T ss_dssp --B--HHHHHHHHHTT-EEEEEE-------------S-B--HHHHHHHHHHHHHHHHHTT------S-----------S-
T ss_pred cCCCCHHHHHHHHHCCCEEEEEEecccc-----cccccccHHHHHHHHHHHHHHHHHHcCCC----C-----------CC
Confidence 4678899999999999999999988722 223333 567888999999999983 2 33
Q ss_pred CccccccCCeeeecCChhHHHHHHHHHHHHHHHHhh
Q 046146 119 PVWLHYIPGSVFRSYSKPFMSYMQKFMTLIVDMMKK 154 (829)
Q Consensus 119 P~WL~~~p~~~~R~~~~~y~~~~~~~~~~l~~~i~~ 154 (829)
|-++--+- -..+..+.+.+..||+.+...|..
T Consensus 96 ~IYfavD~----d~~~~~~~~~i~~Y~~g~~~~l~~ 127 (136)
T PF08924_consen 96 PIYFAVDY----DATDAECDSAILPYFRGWNSALGA 127 (136)
T ss_dssp EEEEE--T----S-B-HH-------HHHHHHHHHGG
T ss_pred EEEEEeec----CCCchhhhhHHHHHHHHHHHHHhh
Confidence 44443221 124667788888899999888874
No 170
>cd06547 GH85_ENGase Endo-beta-N-acetylglucosaminidase (ENGase) hydrolyzes the N-N'-diacetylchitobiosyl core of N-glycosylproteins. The beta-1,4-glycosyl bond located between two N-acetylglucosamine residues is hydrolyzed such that N-acetylglucosamine 1 remains with the protein and N-acetylglucosamine 2 forms the reducing end of the released glycan. ENGase is a key enzyme in the processing of free oligosaccharides in the cytosol of eukaryotes. Oligosaccharides formed in the lumen of the endoplasmic reticulum are transported into the cytosol where they are catabolized by cytosolic ENGases and other enzymes, possibly to maximize the reutilization of the component sugars. ENGases have an eight-stranded alpha/beta barrel topology and are classified as a family 85 glycosyl hydrolase (GH85) domain. The GH85 ENGases are sequence-similar to the family 18 glycosyl hydrolases, also known as GH18 chitinases. An ENGase-like protein is also found in bacteria and is included in this alignment mod
Probab=28.42 E-value=1.1e+02 Score=34.49 Aligned_cols=115 Identities=16% Similarity=0.232 Sum_probs=65.9
Q ss_pred EEEEceeCCcccCCCCeeeeccchhHHHHHHHHHHcCcEEEEecCcccccccCCCCCCccccccCCeeeecCChhHHHHH
Q 046146 62 TIESYVFWSGHELSPGKYSFEGRYDLVKFVKTVQQAGMYMLLRIGPFVAAEYNYGGVPVWLHYIPGSVFRSYSKPFMSYM 141 (829)
Q Consensus 62 tV~~yv~Wn~hEp~~G~~dF~g~~dl~~fl~~a~~~GL~VilrpGPyicaEw~~GG~P~WL~~~p~~~~R~~~~~y~~~~ 141 (829)
.|.+.|.|+.+--+. -=...++.|+++|+.|+--. --||+ +-+.|+.. + +.. ++ +..
T Consensus 32 yvD~fvywsh~~~~i---------Pp~~~idaAHknGV~Vlgti----~~e~~--~~~~~~~~---l-L~~-~~---~~~ 88 (339)
T cd06547 32 YVDTFVYFSHSAVTI---------PPADWINAAHRNGVPVLGTF----IFEWT--GQVEWLED---F-LKK-DE---DGS 88 (339)
T ss_pred hhheeecccCccccC---------CCcHHHHHHHhcCCeEEEEE----EecCC--CchHHHHH---H-hcc-Cc---ccc
Confidence 477778888754330 11245899999999997422 34666 34556653 1 111 11 223
Q ss_pred HHHHHHHHHHHhhccccccCCCcEEEeccccccccchhhccCcHHHHHHHHHHHHhC--CCccceee
Q 046146 142 QKFMTLIVDMMKKEKLFASQGGPIILAQVENEYQWYEQFYKGGKEYAMWAASMAVSQ--NTGVPWIM 206 (829)
Q Consensus 142 ~~~~~~l~~~i~~~~l~~~~gGpII~~QiENEyg~~~~~y~~~~~y~~~l~~~~~~~--g~~vp~~~ 206 (829)
.++.++|++..+.+.+ .| +.+-+|+..+... .-..-.++++.|++.+++. +..|-|+.
T Consensus 89 ~~~a~kLv~lak~yGf----DG--w~iN~E~~~~~~~-~~~~l~~F~~~L~~~~~~~~~~~~v~WYD 148 (339)
T cd06547 89 FPVADKLVEVAKYYGF----DG--WLINIETELGDAE-KAKRLIAFLRYLKAKLHENVPGSLVIWYD 148 (339)
T ss_pred hHHHHHHHHHHHHhCC----Cc--eEeeeeccCCcHH-HHHHHHHHHHHHHHHHhhcCCCcEEEEEe
Confidence 5567778888874433 34 7788888873110 0012356777777777663 44556653
No 171
>COG1735 Php Predicted metal-dependent hydrolase with the TIM-barrel fold [General function prediction only]
Probab=28.15 E-value=2.4e+02 Score=31.57 Aligned_cols=117 Identities=16% Similarity=0.140 Sum_probs=69.3
Q ss_pred HHHHHHHcCCCEEEEceeCCcccCCCCeeeeccchhHHHHHHHHHHcCcEEEEecCcccccccCCCCCCccccccCCeee
Q 046146 51 LIQAAKEGGLNTIESYVFWSGHELSPGKYSFEGRYDLVKFVKTVQQAGMYMLLRIGPFVAAEYNYGGVPVWLHYIPGSVF 130 (829)
Q Consensus 51 ~l~k~ka~GlNtV~~yv~Wn~hEp~~G~~dF~g~~dl~~fl~~a~~~GL~VilrpGPyicaEw~~GG~P~WL~~~p~~~~ 130 (829)
.+...++.|.+||=.--.=++ .||+.+..+.+++-||.++...|+|.-+.|+ .|+...|
T Consensus 53 e~~~~~a~Gg~TIVD~T~~~~------------GRdv~~m~~vs~atglnIV~~TGfy~~~~~p-----~~~~~~~---- 111 (316)
T COG1735 53 ELKRLMARGGQTIVDATNIGI------------GRDVLKMRRVAEATGLNIVAATGFYKAAFHP-----EYFALRP---- 111 (316)
T ss_pred HHHHHHHcCCCeEeeCCcccc------------CcCHHHHHHHHHHhCCcEEEeccccccccch-----hHHhhCC----
Confidence 455666789988854332111 3699999999999999999999999988875 6776533
Q ss_pred ecCChhHHHHHHHHHHHHHHHHhhccccccCCCcEEEeccccccccchhhccCcHHHHHHHHHHHHhC-CCccceee
Q 046146 131 RSYSKPFMSYMQKFMTLIVDMMKKEKLFASQGGPIILAQVENEYQWYEQFYKGGKEYAMWAASMAVSQ-NTGVPWIM 206 (829)
Q Consensus 131 R~~~~~y~~~~~~~~~~l~~~i~~~~l~~~~gGpII~~QiENEyg~~~~~y~~~~~y~~~l~~~~~~~-g~~vp~~~ 206 (829)
++.+...++..+.. . -.|+=|..=|=-|-|.+.. + ...=.+.|+..+|++ -.++|+.+
T Consensus 112 ----------i~~~ae~~v~ei~~-G----i~gT~ikAGiIk~~~~~~~-i--Tp~Eek~lrAaA~A~~~Tg~Pi~t 170 (316)
T COG1735 112 ----------IEELAEFVVKEIEE-G----IAGTGIKAGIIKEAGGSPA-I--TPLEEKSLRAAARAHKETGAPIST 170 (316)
T ss_pred ----------HHHHHHHHHHHHHh-c----ccCCccccceeeeccCccc-C--CHHHHHHHHHHHHHhhhcCCCeEE
Confidence 34444445555541 1 1233333322244443221 1 122245566666554 45678764
No 172
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=26.97 E-value=74 Score=34.00 Aligned_cols=55 Identities=16% Similarity=0.058 Sum_probs=37.5
Q ss_pred cHHHHHHHHHHcCCCEEEEceeCCcccCCC----CeeeeccchhHHHHHHHHHHcCcEEEEec
Q 046146 47 MWPELIQAAKEGGLNTIESYVFWSGHELSP----GKYSFEGRYDLVKFVKTVQQAGMYMLLRI 105 (829)
Q Consensus 47 ~W~d~l~k~ka~GlNtV~~yv~Wn~hEp~~----G~~dF~g~~dl~~fl~~a~~~GL~Vilrp 105 (829)
.+++.++.++++|..+|.+ |..+.... -.+... ...|.++.++|++.|+.+.+-+
T Consensus 91 ~~~~~i~~a~~lGa~~i~~---~~~~~~~~~~~~~~~~~~-~~~l~~l~~~a~~~gv~l~iE~ 149 (275)
T PRK09856 91 MIKLAMDMAKEMNAGYTLI---SAAHAGYLTPPNVIWGRL-AENLSELCEYAENIGMDLILEP 149 (275)
T ss_pred HHHHHHHHHHHhCCCEEEE---cCCCCCCCCCHHHHHHHH-HHHHHHHHHHHHHcCCEEEEec
Confidence 5667788999999999855 33332211 111111 1368889999999999999887
No 173
>PRK09267 flavodoxin FldA; Validated
Probab=26.66 E-value=3.5e+02 Score=26.74 Aligned_cols=74 Identities=11% Similarity=0.086 Sum_probs=48.0
Q ss_pred ECCEEeEEEEEEeeCCCCCcccHHHHHHHHHHcCCCEEEEceeCCcccCCCCeeeeccchhHHHHHHHHHHcCcEEE
Q 046146 26 IHGRRKLFLSASIHYPRSVPAMWPELIQAAKEGGLNTIESYVFWSGHELSPGKYSFEGRYDLVKFVKTVQQAGMYML 102 (829)
Q Consensus 26 idGkp~~~~sG~~Hy~R~~~~~W~d~l~k~ka~GlNtV~~yv~Wn~hEp~~G~~dF~g~~dl~~fl~~a~~~GL~Vi 102 (829)
+..-..++++...|+...+|..|.+-+.+++...++-..+.+|= ......-.-.|. .-+..+-+++++.|..++
T Consensus 44 l~~~d~vi~g~pt~~~G~~~~~~~~fl~~~~~~~l~~k~vaifg-~g~~~~~~~~~~--~~~~~l~~~l~~~g~~~v 117 (169)
T PRK09267 44 FEAYDLLILGIPTWGYGELQCDWDDFLPELEEIDFSGKKVALFG-LGDQEDYAEYFC--DAMGTLYDIVEPRGATIV 117 (169)
T ss_pred HhhCCEEEEEecCcCCCCCCHHHHHHHHHHhcCCCCCCEEEEEe-cCCCCcchHHHH--HHHHHHHHHHHHCCCEEE
Confidence 34456789999999878888899999998887777776777773 211111001122 235666777888886554
No 174
>TIGR02103 pullul_strch alpha-1,6-glucosidases, pullulanase-type. Members of this protein family include secreted (or membrane-anchored) pullulanases of Gram-negative bacteria and pullulanase-type starch debranching enzymes of plants. Both enzymes hydrolyze alpha-1,6 glycosidic linkages. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family is closely homologous to, but architecturally different from, the Gram-positive pullulanases of Gram-positive bacteria (TIGR02102).
Probab=26.17 E-value=99 Score=39.49 Aligned_cols=21 Identities=10% Similarity=0.485 Sum_probs=18.9
Q ss_pred hhHHHHHHHHHHcCcEEEEec
Q 046146 85 YDLVKFVKTVQQAGMYMLLRI 105 (829)
Q Consensus 85 ~dl~~fl~~a~~~GL~Vilrp 105 (829)
.++.++++.|+++||.|||-.
T Consensus 404 ~Efk~mV~alH~~Gi~VIlDV 424 (898)
T TIGR02103 404 KEFREMVQALNKTGLNVVMDV 424 (898)
T ss_pred HHHHHHHHHHHHCCCEEEEEe
Confidence 479999999999999999875
No 175
>PF14701 hDGE_amylase: glucanotransferase domain of human glycogen debranching enzyme
Probab=26.00 E-value=1.9e+02 Score=33.85 Aligned_cols=97 Identities=20% Similarity=0.298 Sum_probs=57.8
Q ss_pred eCCCC--CcccHHHHHHHHHHcCCCEEEEc-eeCCcccCCC----Ceeeec-----c-----chhHHHHHHHHH-HcCcE
Q 046146 39 HYPRS--VPAMWPELIQAAKEGGLNTIESY-VFWSGHELSP----GKYSFE-----G-----RYDLVKFVKTVQ-QAGMY 100 (829)
Q Consensus 39 Hy~R~--~~~~W~d~l~k~ka~GlNtV~~y-v~Wn~hEp~~----G~~dF~-----g-----~~dl~~fl~~a~-~~GL~ 100 (829)
+.+++ +-+.|+++|+.+++.|.|+|-.- +---.....| .+..|+ . ..++.++++.++ +.||.
T Consensus 13 vlsk~~G~~~~W~~~l~~~~~~GYNmIHftPlq~~G~S~S~YSI~Dql~~~~~~~~~~~~~~~~~v~~~v~~~~~~~~ll 92 (423)
T PF14701_consen 13 VLSKWMGPFSDWEKHLKVISEKGYNMIHFTPLQERGESNSPYSIYDQLKFDPDFFPPGKESTFEDVKEFVKEAEKKYGLL 92 (423)
T ss_pred EhhhhcCCHhHHHHHHHHHHHcCCcEEEecccccCCCCCCCccccchhhcChhhcCCCccccHHHHHHHHHHHHHHcCce
Confidence 44453 44689999999999999999642 1111000010 111111 1 149999998885 68999
Q ss_pred EEEecCcccccccCCCCC-CccccccCCeeeecCChhHHHHH
Q 046146 101 MLLRIGPFVAAEYNYGGV-PVWLHYIPGSVFRSYSKPFMSYM 141 (829)
Q Consensus 101 VilrpGPyicaEw~~GG~-P~WL~~~p~~~~R~~~~~y~~~~ 141 (829)
++.-. =|+.-.. =.||..+|+.-.=..+.++|+.+
T Consensus 93 ~~~Dv------V~NHtA~nS~Wl~eHPEagYN~~nsPHL~pA 128 (423)
T PF14701_consen 93 SMTDV------VLNHTANNSPWLREHPEAGYNLENSPHLRPA 128 (423)
T ss_pred EEEEE------eeccCcCCChHHHhCcccccCCCCCcchhhH
Confidence 77554 1333222 36999999864444455666543
No 176
>PF01075 Glyco_transf_9: Glycosyltransferase family 9 (heptosyltransferase); InterPro: IPR002201 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 9 GT9 from CAZY comprises enzymes with two known activity; lipopolysaccharide N-acetylglucosaminyltransferase (2.4.1.56 from EC), heptosyltransferase (2.4 from EC). Heptosyltransferase I is thought to add L-glycero-D-manno-heptose to the inner 3-deoxy-D-manno-octulosonic acid (Kdo) residue of the lipopolysaccharide core []. Heptosyltransferase II is a glycosyltransferase involved in the synthesis of the inner core region of lipopolysaccharide []. Lipopolysaccharide is a major component of the outer leaflet of the outer membrane in Gram-negative bacteria. It is composed of three domains; lipid A, Core oligosaccharide and the O-antigen. These enzymes transfer heptose to the lipopolysaccharide core [].; GO: 0016757 transferase activity, transferring glycosyl groups, 0008152 metabolic process; PDB: 1PSW_A 2H1F_A 2GT1_A 3TOV_A 2H1H_A.
Probab=25.92 E-value=49 Score=34.62 Aligned_cols=75 Identities=19% Similarity=0.276 Sum_probs=51.3
Q ss_pred EeEEEEEEeeCCC-CCcccHHHHHHHHHHcCCCEEEEceeCCccc--------CCCC----eeeeccchhHHHHHHHHHH
Q 046146 30 RKLFLSASIHYPR-SVPAMWPELIQAAKEGGLNTIESYVFWSGHE--------LSPG----KYSFEGRYDLVKFVKTVQQ 96 (829)
Q Consensus 30 p~~~~sG~~Hy~R-~~~~~W~d~l~k~ka~GlNtV~~yv~Wn~hE--------p~~G----~~dF~g~~dl~~fl~~a~~ 96 (829)
-+.+.-|+-+..| +|.+.|.+.++++++.| ..+.++|.-.| ..++ ..++.|..+|..++.+.+.
T Consensus 107 ~i~i~~~a~~~~k~wp~e~~~~l~~~l~~~~---~~vvl~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~~ali~~ 183 (247)
T PF01075_consen 107 YIGINPGASWPSKRWPAEKWAELIERLKERG---YRVVLLGGPEEQEKEIADQIAAGLQNPVINLAGKTSLRELAALISR 183 (247)
T ss_dssp EEEEE---SSGGGS--HHHHHHHHHHHCCCT----EEEE--SSHHHHHHHHHHHHTTHTTTTEEETTTS-HHHHHHHHHT
T ss_pred eEEEeecCCCccccCCHHHHHHHHHHHHhhC---ceEEEEccchHHHHHHHHHHHHhcccceEeecCCCCHHHHHHHHhc
Confidence 3444445545444 79999999999999998 56678888777 1233 6889999999999999999
Q ss_pred cCcEEEEecCc
Q 046146 97 AGMYMLLRIGP 107 (829)
Q Consensus 97 ~GL~VilrpGP 107 (829)
..+.|-.-.||
T Consensus 184 a~~~I~~Dtg~ 194 (247)
T PF01075_consen 184 ADLVIGNDTGP 194 (247)
T ss_dssp SSEEEEESSHH
T ss_pred CCEEEecCChH
Confidence 99988887776
No 177
>TIGR01698 PUNP purine nucleotide phosphorylase. methylthioadenosine.
Probab=25.91 E-value=90 Score=33.56 Aligned_cols=39 Identities=18% Similarity=0.147 Sum_probs=30.7
Q ss_pred EECCEEeEEEEEEeeCCCC-CcccHHHHHHHHHHcCCCEE
Q 046146 25 IIHGRRKLFLSASIHYPRS-VPAMWPELIQAAKEGGLNTI 63 (829)
Q Consensus 25 ~idGkp~~~~sG~~Hy~R~-~~~~W~d~l~k~ka~GlNtV 63 (829)
.+.|++...++|.+|+... ...+-+--++.||++|+..|
T Consensus 47 ~l~g~~V~~l~Gr~H~yeg~~~~~v~~~i~al~~lGv~~i 86 (237)
T TIGR01698 47 RIGDGPVLVLGGRTHAYEGGDARAVVHPVRTARATGAETL 86 (237)
T ss_pred EECCEEEEEEcCCCcccCCCcHHHhHHHHHHHHHcCCCEE
Confidence 4579999999999997665 33444778999999999654
No 178
>KOG0259 consensus Tyrosine aminotransferase [Amino acid transport and metabolism]
Probab=25.75 E-value=97 Score=35.60 Aligned_cols=66 Identities=17% Similarity=0.232 Sum_probs=54.1
Q ss_pred EEEeeCCC-CCcccHHHHHHHHHHc-CCCEEEEceeCCcccCCCCeeeeccchhHHHHHHHHHHcCcEEEEe
Q 046146 35 SASIHYPR-SVPAMWPELIQAAKEG-GLNTIESYVFWSGHELSPGKYSFEGRYDLVKFVKTVQQAGMYMLLR 104 (829)
Q Consensus 35 sG~~Hy~R-~~~~~W~d~l~k~ka~-GlNtV~~yv~Wn~hEp~~G~~dF~g~~dl~~fl~~a~~~GL~Vilr 104 (829)
.=|+.|+- .|.+.|+-+|.-+.++ -=|||.+-|. |=+.|--++|+-. .|.+.+++|++.|+-||..
T Consensus 171 ~lEVR~ydlLPe~~weIDL~~veal~DENT~Aivvi-NP~NPcGnVys~~---HL~kiae~A~klgi~vIaD 238 (447)
T KOG0259|consen 171 GLEVRYYDLLPEKDWEIDLDGVEALADENTVAIVVI-NPNNPCGNVYSED---HLKKIAETAKKLGIMVIAD 238 (447)
T ss_pred CceeEeecccCcccceechHHHHHhhccCeeEEEEe-CCCCCCcccccHH---HHHHHHHHHHHhCCeEEeh
Confidence 33555555 5888899999999987 6799998764 6777888899888 8999999999999988864
No 179
>PF10566 Glyco_hydro_97: Glycoside hydrolase 97 ; InterPro: IPR019563 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is the 97th family of glycosidases, in this case bacterial. The central part of the GH97 family protein sequences represents a typical and complete (beta/alpha)8-barrel or catalytic TIM-barrel type domain. The N- and C-terminal parts of the sequences, mainly consisting of beta-strands, most probably form two additional non-catalytic domains with as yet unknown functions. The non-catalytic domains of glycosidases from the alpha-galactosidase and alpha-glucosidase superfamilies are also predominantly composed of beta-strands, and at least some of these domains are involved in oligomerisation and carbohydrate binding. In all known glycosidases with the (beta-alpha)8-barrel fold, the amino acid residues at the active site are located on the C-termini of the beta-strands []. ; PDB: 2JKP_A 2JKE_A 2D73_B 2ZQ0_B 2JKA_A 3A24_A.
Probab=25.66 E-value=2.2e+02 Score=31.38 Aligned_cols=114 Identities=19% Similarity=0.243 Sum_probs=67.8
Q ss_pred CcccHHHHHHHHHHcCCCEEEEceeCCcccCCCCeeeecc---chhHHHHHHHHHHcCcEEEEecCcccccccCCCCCCc
Q 046146 44 VPAMWPELIQAAKEGGLNTIESYVFWSGHELSPGKYSFEG---RYDLVKFVKTVQQAGMYMLLRIGPFVAAEYNYGGVPV 120 (829)
Q Consensus 44 ~~~~W~d~l~k~ka~GlNtV~~yv~Wn~hEp~~G~~dF~g---~~dl~~fl~~a~~~GL~VilrpGPyicaEw~~GG~P~ 120 (829)
.-+.-+.-+..+.++|+..|-+=.-|...+ ....+||+. ..||.++++-|++.|..|+|+- -|..||-..
T Consensus 30 ~t~~~k~yIDfAa~~G~eYvlvD~GW~~~~-~~~~~d~~~~~~~~dl~elv~Ya~~KgVgi~lw~------~~~~~~~~~ 102 (273)
T PF10566_consen 30 TTETQKRYIDFAAEMGIEYVLVDAGWYGWE-KDDDFDFTKPIPDFDLPELVDYAKEKGVGIWLWY------HSETGGNVA 102 (273)
T ss_dssp SHHHHHHHHHHHHHTT-SEEEEBTTCCGS---TTT--TT-B-TT--HHHHHHHHHHTT-EEEEEE------ECCHTTBHH
T ss_pred CHHHHHHHHHHHHHcCCCEEEecccccccc-ccccccccccCCccCHHHHHHHHHHcCCCEEEEE------eCCcchhhH
Confidence 455678889999999999999877787622 234567663 4699999999999999999885 344433211
Q ss_pred cccc-------------cCCeeeecCChhHHHHHHHHHHHHHHHHhhccccccCCCcE
Q 046146 121 WLHY-------------IPGSVFRSYSKPFMSYMQKFMTLIVDMMKKEKLFASQGGPI 165 (829)
Q Consensus 121 WL~~-------------~p~~~~R~~~~~y~~~~~~~~~~l~~~i~~~~l~~~~gGpI 165 (829)
=|.+ ..++++=.-+. --+.+-+|+..|++.-|++.|+..-+|++
T Consensus 103 ~~~~~~~~~f~~~~~~Gv~GvKidF~~~-d~Q~~v~~y~~i~~~AA~~~LmvnfHg~~ 159 (273)
T PF10566_consen 103 NLEKQLDEAFKLYAKWGVKGVKIDFMDR-DDQEMVNWYEDILEDAAEYKLMVNFHGAT 159 (273)
T ss_dssp HHHCCHHHHHHHHHHCTEEEEEEE--SS-TSHHHHHHHHHHHHHHHHTT-EEEETTS-
T ss_pred hHHHHHHHHHHHHHHcCCCEEeeCcCCC-CCHHHHHHHHHHHHHHHHcCcEEEecCCc
Confidence 1111 12333211111 12556778889999999888876666554
No 180
>PF07691 PA14: PA14 domain; InterPro: IPR011658 The PA14 domain forms an insert in bacterial beta-glucosidases, other glycosidases, glycosyltransferases, proteases, amidases, yeast adhesins and bacterial toxins, including anthrax protective antigen (PA). The domain also occurs in a Dictyostelium pre-spore cell-inducing factor Psi and in fibrocystin, the mammalian protein whose mutation leads to polycystic kidney and hepatic disease. The crystal structure of PA shows that this domain (named PA14 after its location in the PA20 pro-peptide) has a beta-barrel structure. The PA14 domain sequence suggests a binding function, rather than a catalytic role. The PA14 domain distribution is compatible with carbohydrate binding [].; PDB: 2XVG_A 2XVK_A 2XVL_A 2XJU_A 2XJT_A 2XJQ_A 2XJS_A 2XJV_A 2XJP_A 2XJR_A ....
Probab=25.45 E-value=3.3e+02 Score=25.67 Aligned_cols=70 Identities=19% Similarity=0.162 Sum_probs=37.8
Q ss_pred EEEEEEEecCCCchhhhccCCCceEEecCcceEEEEEEcCEEEEEEEeccCC-----ceeeEEEeeeecCC-CccEEEEE
Q 046146 467 YLWYTTSIIFSEDEEFLRTGSQPVLLIESKGHTLHAFINQELVQGNSTYSTG-----TLVFSFTALIPLKA-GKNKIDLL 540 (829)
Q Consensus 467 yl~Y~T~v~~~~~~~~~~~~~~~~L~i~~~~D~~~vfvng~~v~G~~~~~~~-----~~~~~~~~~~~l~~-g~~~L~IL 540 (829)
.+.|+..|..+.++. -++.+. ..|.+.+||||+.+ -...+... .........+.+.+ +.+.|.|.
T Consensus 47 ~~~~~G~~~~~~~G~-------y~f~~~-~~d~~~l~idg~~v-id~~~~~~~~~~~~~~~~~~~~v~l~~g~~y~i~i~ 117 (145)
T PF07691_consen 47 SVRWTGYFKPPETGT-------YTFSLT-SDDGARLWIDGKLV-IDNWGNQGGGFFNSGPSSTSGTVTLEAGGKYPIRIE 117 (145)
T ss_dssp EEEEEEEEEESSSEE-------EEEEEE-ESSEEEEEETTEEE-EECSCTTTSTTTTTSBCCEEEEEEE-TT-EEEEEEE
T ss_pred EEEEEEEEecccCce-------EEEEEE-ecccEEEEECCEEE-EcCCccccccccccccceEEEEEEeeCCeeEEEEEE
Confidence 366788787654331 223333 67899999999999 54443211 00111122333444 46788886
Q ss_pred EecCC
Q 046146 541 SMTVG 545 (829)
Q Consensus 541 ven~G 545 (829)
..+.+
T Consensus 118 y~~~~ 122 (145)
T PF07691_consen 118 YFNRG 122 (145)
T ss_dssp EEECS
T ss_pred EEECC
Confidence 65554
No 181
>PLN02877 alpha-amylase/limit dextrinase
Probab=25.37 E-value=1.1e+02 Score=39.19 Aligned_cols=22 Identities=18% Similarity=0.455 Sum_probs=19.4
Q ss_pred hhHHHHHHHHHHcCcEEEEecC
Q 046146 85 YDLVKFVKTVQQAGMYMLLRIG 106 (829)
Q Consensus 85 ~dl~~fl~~a~~~GL~VilrpG 106 (829)
.++.++++.++++||.|||-.=
T Consensus 466 ~efk~mV~~lH~~GI~VImDVV 487 (970)
T PLN02877 466 IEFRKMVQALNRIGLRVVLDVV 487 (970)
T ss_pred HHHHHHHHHHHHCCCEEEEEEC
Confidence 4699999999999999999853
No 182
>PF00728 Glyco_hydro_20: Glycosyl hydrolase family 20, catalytic domain; InterPro: IPR015883 Glycoside hydrolase family 20 GH20 from CAZY comprises enzymes with several known activities; beta-hexosaminidase (3.2.1.52 from EC); lacto-N-biosidase (3.2.1.140 from EC). Carbonyl oxygen of the C-2 acetamido group of the substrate acts as the catalytic nucleophile/base in this family of enzymes. In the brain and other tissues, beta-hexosaminidase A degrades GM2 gangliosides; specifically, the enzyme hydrolyses terminal non-reducing N-acetyl-D-hexosamine residues in N-acetyl-beta-D-hexosaminides. There are 3 forms of beta-hexosaminidase: hexosaminidase A is a trimer, with one alpha, one beta-A and one beta-B chain; hexosaminidase B is a tetramer of two beta-A and two beta-B chains; and hexosaminidase S is a homodimer of alpha chains. The two beta chains are derived from the cleavage of a precursor. Mutations in the beta-chain lead to Sandhoff disease, a lysosomal storage disorder characterised by accumulation of GM2 ganglioside [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds; PDB: 3RPM_A 1C7T_A 1QBA_A 1QBB_A 1C7S_A 3RCN_A 2YL8_A 2YL6_A 2YLL_A 2YL5_C ....
Probab=25.21 E-value=1.2e+02 Score=33.82 Aligned_cols=59 Identities=20% Similarity=0.219 Sum_probs=42.2
Q ss_pred CcccHHHHHHHHHHcCCCEEEEcee----CCcccCC------CC---------eeeeccchhHHHHHHHHHHcCcEEEEe
Q 046146 44 VPAMWPELIQAAKEGGLNTIESYVF----WSGHELS------PG---------KYSFEGRYDLVKFVKTVQQAGMYMLLR 104 (829)
Q Consensus 44 ~~~~W~d~l~k~ka~GlNtV~~yv~----Wn~hEp~------~G---------~~dF~g~~dl~~fl~~a~~~GL~Vilr 104 (829)
+.+.-++.|..|-..++|++..++- |.+--+. .| .|.-+ |+.++++.|++.|+.||--
T Consensus 16 ~~~~ik~~id~ma~~k~N~lhlhl~D~~~~~~~~~~~p~l~~~ga~~~~~~~~~yT~~---di~~lv~yA~~~gI~VIPe 92 (351)
T PF00728_consen 16 SVDTIKRLIDQMAYYKLNVLHLHLSDDQGFRLESKSYPELTEKGAYRPSDAGGYYTKE---DIRELVAYAKERGIEVIPE 92 (351)
T ss_dssp -HHHHHHHHHHHHHTT-SEEEEEEESSTCB-BEBSTSTHHHHTTTESTTCTESEBEHH---HHHHHHHHHHHTT-EEEEE
T ss_pred CHHHHHHHHHHHHHcCCcEEEEEEecCCCCccccCCCccccccCccccccccccCCHH---HHHHHHHHHHHcCCceeee
Confidence 6677889999999999999999985 4433211 22 34334 9999999999999999965
Q ss_pred c
Q 046146 105 I 105 (829)
Q Consensus 105 p 105 (829)
+
T Consensus 93 i 93 (351)
T PF00728_consen 93 I 93 (351)
T ss_dssp E
T ss_pred c
Confidence 4
No 183
>cd01299 Met_dep_hydrolase_A Metallo-dependent hydrolases, subgroup A is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown.
Probab=24.96 E-value=1.3e+02 Score=33.11 Aligned_cols=61 Identities=15% Similarity=0.157 Sum_probs=43.3
Q ss_pred CcccHHHHHHHHHHcCCCEEEEceeCCcccC--CCCeeeeccchhHHHHHHHHHHcCcEEEEec
Q 046146 44 VPAMWPELIQAAKEGGLNTIESYVFWSGHEL--SPGKYSFEGRYDLVKFVKTVQQAGMYMLLRI 105 (829)
Q Consensus 44 ~~~~W~d~l~k~ka~GlNtV~~yv~Wn~hEp--~~G~~dF~g~~dl~~fl~~a~~~GL~Vilrp 105 (829)
.++..++.++.+++.|.+.|-+|.-+..-.+ .++...++ ...+.+.+++|++.|+.|.+-.
T Consensus 118 ~~~~~~~~v~~~~~~G~~~iK~~~~g~~~~~~~~~~~~~~~-~e~l~~~~~~A~~~g~~v~~H~ 180 (342)
T cd01299 118 GVEEVRAAVREQLRRGADQIKIMATGGVLSPGDPPPDTQFS-EEELRAIVDEAHKAGLYVAAHA 180 (342)
T ss_pred CHHHHHHHHHHHHHhCCCEEEEeccCCcCCCCCCCcccCcC-HHHHHHHHHHHHHcCCEEEEEe
Confidence 4677899999999999999999975432111 12211122 2378899999999999888775
No 184
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=24.45 E-value=98 Score=33.15 Aligned_cols=60 Identities=17% Similarity=0.034 Sum_probs=38.0
Q ss_pred ccHHHHHHHHHHcCCCEEEEceeCCcccCCC-CeeeeccchhHHHHHHHHHHcCcEEEEecC
Q 046146 46 AMWPELIQAAKEGGLNTIESYVFWSGHELSP-GKYSFEGRYDLVKFVKTVQQAGMYMLLRIG 106 (829)
Q Consensus 46 ~~W~d~l~k~ka~GlNtV~~yv~Wn~hEp~~-G~~dF~g~~dl~~fl~~a~~~GL~VilrpG 106 (829)
+.+++.++.++++|.+.|.+.-+-...++.. -.++. -...|.++.++|+++|+.+.+-+-
T Consensus 94 ~~~~~~i~~a~~lG~~~v~~~~~~~~~~~~~~~~~~~-~~~~l~~l~~~a~~~gv~l~lE~~ 154 (284)
T PRK13210 94 EIMKKAIRLAQDLGIRTIQLAGYDVYYEEKSEETRQR-FIEGLAWAVEQAAAAQVMLAVEIM 154 (284)
T ss_pred HHHHHHHHHHHHhCCCEEEECCcccccccccHHHHHH-HHHHHHHHHHHHHHhCCEEEEEec
Confidence 4467889999999999997631100011111 01110 013678888999999999998873
No 185
>cd06562 GH20_HexA_HexB-like Beta-N-acetylhexosaminidases catalyze the removal of beta-1,4-linked N-acetyl-D-hexosamine residues from the non-reducing ends of N-acetyl-beta-D-hexosaminides including N-acetylglucosides and N-acetylgalactosides. The hexA and hexB genes encode the alpha- and beta-subunits of the two major beta-N-acetylhexosaminidase isoenzymes, N-acetyl-beta-D-hexosaminidase A (HexA) and beta-N-acetylhexosaminidase B (HexB). Both the alpha and the beta catalytic subunits have a TIM-barrel fold and belong to the glycosyl hydrolase family 20 (GH20). The HexA enzyme is a heterodimer containing one alpha and one beta subunit while the HexB enzyme is a homodimer containing two beta-subunits. Hexosaminidase mutations cause an inability to properly hydrolyze certain sphingolipids which accumulate in lysosomes within the brain, resulting in the lipid storage disorders Tay-Sachs and Sandhoff. Mutations in the alpha subunit cause in a deficiency in the HexA enzyme and result in
Probab=24.28 E-value=3.6e+02 Score=30.48 Aligned_cols=62 Identities=19% Similarity=0.174 Sum_probs=45.7
Q ss_pred CcccHHHHHHHHHHcCCCEEEEcee----CCcccCC------CCeeeecc---chhHHHHHHHHHHcCcEEEEec
Q 046146 44 VPAMWPELIQAAKEGGLNTIESYVF----WSGHELS------PGKYSFEG---RYDLVKFVKTVQQAGMYMLLRI 105 (829)
Q Consensus 44 ~~~~W~d~l~k~ka~GlNtV~~yv~----Wn~hEp~------~G~~dF~g---~~dl~~fl~~a~~~GL~Vilrp 105 (829)
+.+..++.|+.|-...+|+...++- |.+--+. .|.|.=.| ..|+..+++.|++.|+.||.-+
T Consensus 16 ~~~~ik~~Id~ma~~KlN~lh~HltDd~~~rle~~~~P~Lt~~ga~~~~~~YT~~di~eiv~yA~~rgI~vIPEI 90 (348)
T cd06562 16 SVDSIKRTIDAMAYNKLNVLHWHITDSQSFPLESPSYPELSKKGAYSPSEVYTPEDVKEIVEYARLRGIRVIPEI 90 (348)
T ss_pred CHHHHHHHHHHHHHhCCcEEEEeEEcCCCceEeeCCCchhhhccCcCCCceECHHHHHHHHHHHHHcCCEEEEec
Confidence 5788899999999999999998864 5553321 23221111 2499999999999999999654
No 186
>PRK05265 pyridoxine 5'-phosphate synthase; Provisional
Probab=24.26 E-value=83 Score=33.85 Aligned_cols=48 Identities=19% Similarity=0.457 Sum_probs=36.9
Q ss_pred ccHHHHHHHHHHcCCCEEEEceeCCcccCCCCeeeeccchhHHHHHHHHHHcCcEEE-EecCccccc
Q 046146 46 AMWPELIQAAKEGGLNTIESYVFWSGHELSPGKYSFEGRYDLVKFVKTVQQAGMYML-LRIGPFVAA 111 (829)
Q Consensus 46 ~~W~d~l~k~ka~GlNtV~~yv~Wn~hEp~~G~~dF~g~~dl~~fl~~a~~~GL~Vi-lrpGPyica 111 (829)
+.-++.++++|++|+ -|+.+| +|.+ +-+++|++.|-..| |-+|||..+
T Consensus 113 ~~l~~~i~~L~~~gI-rVSLFi-----dP~~------------~qi~~A~~~GAd~VELhTG~yA~a 161 (239)
T PRK05265 113 DKLKPAIARLKDAGI-RVSLFI-----DPDP------------EQIEAAAEVGADRIELHTGPYADA 161 (239)
T ss_pred HHHHHHHHHHHHCCC-EEEEEe-----CCCH------------HHHHHHHHhCcCEEEEechhhhcC
Confidence 334677888999999 667666 4544 34899999999966 999999875
No 187
>PLN02389 biotin synthase
Probab=24.07 E-value=93 Score=35.73 Aligned_cols=50 Identities=20% Similarity=0.209 Sum_probs=31.9
Q ss_pred HHHHHHHHHcCCCEEEEcee--CCcccCCCCeeeeccchhHHHHHHHHHHcCcEE
Q 046146 49 PELIQAAKEGGLNTIESYVF--WSGHELSPGKYSFEGRYDLVKFVKTVQQAGMYM 101 (829)
Q Consensus 49 ~d~l~k~ka~GlNtV~~yv~--Wn~hEp~~G~~dF~g~~dl~~fl~~a~~~GL~V 101 (829)
++.++++|++|++.+..-+- ...+.-.-..-+|+ +..+.++.|++.||.|
T Consensus 178 ~E~l~~LkeAGld~~~~~LeTs~~~y~~i~~~~s~e---~rl~ti~~a~~~Gi~v 229 (379)
T PLN02389 178 KEQAAQLKEAGLTAYNHNLDTSREYYPNVITTRSYD---DRLETLEAVREAGISV 229 (379)
T ss_pred HHHHHHHHHcCCCEEEeeecCChHHhCCcCCCCCHH---HHHHHHHHHHHcCCeE
Confidence 67888899999988765321 21111111122455 6678899999999976
No 188
>KOG0622 consensus Ornithine decarboxylase [Amino acid transport and metabolism]
Probab=23.99 E-value=1e+02 Score=35.63 Aligned_cols=67 Identities=22% Similarity=0.198 Sum_probs=46.3
Q ss_pred CCcccHHHHHHHHHHcCCCEEEEceeCCcccCCCCeeeeccchhHHHHHHHHHHcCcE-EEEecCcccccccCCCCCC
Q 046146 43 SVPAMWPELIQAAKEGGLNTIESYVFWSGHELSPGKYSFEGRYDLVKFVKTVQQAGMY-MLLRIGPFVAAEYNYGGVP 119 (829)
Q Consensus 43 ~~~~~W~d~l~k~ka~GlNtV~~yv~Wn~hEp~~G~~dF~g~~dl~~fl~~a~~~GL~-VilrpGPyicaEw~~GG~P 119 (829)
...+.-+..|..+|++|+|.|-++.+=.---+.+-.|.= -..|-...++++.+.|.. .+|-.| ||+|
T Consensus 190 ~~~~~~~~lLd~ak~l~lnvvGvsfHvGSgc~d~~~y~~-Ai~dAr~vfd~g~e~Gf~m~~LdiG---------GGf~ 257 (448)
T KOG0622|consen 190 CSLDNCRHLLDMAKELELNVVGVSFHVGSGCTDLQAYRD-AISDARNVFDMGAELGFEMDILDIG---------GGFP 257 (448)
T ss_pred CCHHHHHHHHHHHHHcCceEEEEEEEecCCCCCHHHHHH-HHHHHHHHHHHHHhcCceEEEeecC---------CCCC
Confidence 445567889999999999999998764432222222211 134666778888899998 568875 8887
No 189
>PRK12858 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=23.90 E-value=94 Score=35.21 Aligned_cols=62 Identities=10% Similarity=0.073 Sum_probs=43.6
Q ss_pred CCCcccHHHHHHHHHHcCCCEEEEceeCCcccCCCCeeeeccchhHHHHHHHHHHcCcEEEEec
Q 046146 42 RSVPAMWPELIQAAKEGGLNTIESYVFWSGHELSPGKYSFEGRYDLVKFVKTVQQAGMYMLLRI 105 (829)
Q Consensus 42 R~~~~~W~d~l~k~ka~GlNtV~~yv~Wn~hEp~~G~~dF~g~~dl~~fl~~a~~~GL~Vilrp 105 (829)
|.+...=....+.++++|-++|.+.|+|.-.++. .-+-.-..+|.++.+.|++.||-+++-+
T Consensus 102 r~~~~~~~~sve~a~~~GAdAVk~lv~~~~d~~~--~~~~~~~~~l~rv~~ec~~~giPlllE~ 163 (340)
T PRK12858 102 RLPDLLDNWSVRRIKEAGADAVKLLLYYRPDEDD--AINDRKHAFVERVGAECRANDIPFFLEP 163 (340)
T ss_pred CCccccccccHHHHHHcCCCEEEEEEEeCCCcch--HHHHHHHHHHHHHHHHHHHcCCceEEEE
Confidence 5444333333677999999999999999954331 0011223489999999999999988854
No 190
>KOG3833 consensus Uncharacterized conserved protein, contains RtcB domain [Function unknown]
Probab=23.83 E-value=79 Score=35.27 Aligned_cols=53 Identities=23% Similarity=0.296 Sum_probs=46.1
Q ss_pred cHHHHHHHHHHcCCCEEEEceeCCcccCCCCeeeeccchhHHHHHHHHHHcCcE--EE-Eec
Q 046146 47 MWPELIQAAKEGGLNTIESYVFWSGHELSPGKYSFEGRYDLVKFVKTVQQAGMY--ML-LRI 105 (829)
Q Consensus 47 ~W~d~l~k~ka~GlNtV~~yv~Wn~hEp~~G~~dF~g~~dl~~fl~~a~~~GL~--Vi-lrp 105 (829)
.|++.+.+++..|+ .+++.-+=-..|..|+.| .|+.+.+++|..+||- +| |||
T Consensus 444 ~~~sV~D~L~~~~I-~iR~aSpklvmEEAPesY-----KdVtdVVdtc~~aGiskK~~klrP 499 (505)
T KOG3833|consen 444 THESVLDKLRSRGI-AIRVASPKLVMEEAPESY-----KDVTDVVDTCDAAGISKKAIKLRP 499 (505)
T ss_pred cHHHHHHHHHhCCe-EEEeCCccchhhhCchhh-----hhHHHHhhhhhhcccchhhhcccc
Confidence 39999999999999 778888888999999988 4888999999999996 44 776
No 191
>TIGR03700 mena_SCO4494 putative menaquinone biosynthesis protein, SCO4494 family. Members of this protein family appear to be involved in menaquinone biosynthesis by an alternate pathway via futalosine, based on close phylogenetic correlation with known markers of the futalosine pathway, gene clustering in many organisms, and paralogy with the SCO4550 protein.
Probab=23.32 E-value=57 Score=36.86 Aligned_cols=50 Identities=22% Similarity=0.385 Sum_probs=31.8
Q ss_pred HHHHHHHHHcCCCEEE-----EceeCCcccCCCCeeeeccchhHHHHHHHHHHcCcEE
Q 046146 49 PELIQAAKEGGLNTIE-----SYVFWSGHELSPGKYSFEGRYDLVKFVKTVQQAGMYM 101 (829)
Q Consensus 49 ~d~l~k~ka~GlNtV~-----~yv~Wn~hEp~~G~~dF~g~~dl~~fl~~a~~~GL~V 101 (829)
++.|+++|++|++.+- ++-.--++.-.|+....+ +..+.++.|++.|+.+
T Consensus 150 ~e~l~~LkeAGld~~~~~g~E~~~~~v~~~i~~~~~~~~---~~l~~i~~a~~~Gi~~ 204 (351)
T TIGR03700 150 EEVLDELKEAGLDSMPGGGAEIFAEEVRQQICPEKISAE---RWLEIHRTAHELGLKT 204 (351)
T ss_pred HHHHHHHHHcCCCcCCCCcccccCHHHHhhcCCCCCCHH---HHHHHHHHHHHcCCCc
Confidence 5668888999986443 332222233345544344 5668899999999974
No 192
>PRK10076 pyruvate formate lyase II activase; Provisional
Probab=22.97 E-value=2.8e+02 Score=29.25 Aligned_cols=125 Identities=15% Similarity=0.149 Sum_probs=68.9
Q ss_pred cccHHHHHHHHHHcCCC-EEEEc--eeCCcccC---CCCe--eeec-----------c--chhHHHHHHHHHHcCcEEEE
Q 046146 45 PAMWPELIQAAKEGGLN-TIESY--VFWSGHEL---SPGK--YSFE-----------G--RYDLVKFVKTVQQAGMYMLL 103 (829)
Q Consensus 45 ~~~W~d~l~k~ka~GlN-tV~~y--v~Wn~hEp---~~G~--~dF~-----------g--~~dl~~fl~~a~~~GL~Vil 103 (829)
++.-.+.++++|+.|+. +|+|- ++|...+. .-.. +|+- | +..+.+.|+.+.+.|..+.+
T Consensus 53 ~~fl~~l~~~~k~~gi~~~leTnG~~~~~~~~~l~~~~D~~l~DiK~~d~~~~~~~tG~~~~~il~nl~~l~~~g~~v~i 132 (213)
T PRK10076 53 AEFATRFLQRLRLWGVSCAIETAGDAPASKLLPLAKLCDEVLFDLKIMDATQARDVVKMNLPRVLENLRLLVSEGVNVIP 132 (213)
T ss_pred HHHHHHHHHHHHHcCCCEEEECCCCCCHHHHHHHHHhcCEEEEeeccCCHHHHHHHHCCCHHHHHHHHHHHHhCCCcEEE
Confidence 35557889999999985 34443 33322111 1122 2222 2 23455667778888888888
Q ss_pred ecCcccccccCCCCCCccccccCCeeeecCChhHHHHHHHHHHHHHHHHhhccccccCCCcEEEecccc-----------
Q 046146 104 RIGPFVAAEYNYGGVPVWLHYIPGSVFRSYSKPFMSYMQKFMTLIVDMMKKEKLFASQGGPIILAQVEN----------- 172 (829)
Q Consensus 104 rpGPyicaEw~~GG~P~WL~~~p~~~~R~~~~~y~~~~~~~~~~l~~~i~~~~l~~~~gGpII~~QiEN----------- 172 (829)
|. |. .|++ ++++.-++++.+|++.+. +. +|-+..--+
T Consensus 133 R~-~v----------------IPg~---nd~~e~i~~ia~~l~~l~--~~----------~~~llpyh~~g~~Ky~~lg~ 180 (213)
T PRK10076 133 RL-PL----------------IPGF---TLSRENMQQALDVLIPLG--IK----------QIHLLPFHQYGEPKYRLLGK 180 (213)
T ss_pred EE-EE----------------ECCC---CCCHHHHHHHHHHHHHcC--Cc----------eEEEecCCccchhHHHHcCC
Confidence 86 11 3554 355666666666665431 11 121111111
Q ss_pred ccccchhhc-cCcHHHHHHHHHHHHhCCCccc
Q 046146 173 EYQWYEQFY-KGGKEYAMWAASMAVSQNTGVP 203 (829)
Q Consensus 173 Eyg~~~~~y-~~~~~y~~~l~~~~~~~g~~vp 203 (829)
+|-.. .. ..+.+.|+++++.+++.|+.+-
T Consensus 181 ~y~~~--~~~~~~~~~l~~~~~~~~~~gl~~~ 210 (213)
T PRK10076 181 TWSMK--EVPAPSSADVATMREMAERAGFQVT 210 (213)
T ss_pred cCccC--CCCCcCHHHHHHHHHHHHHcCCeEE
Confidence 12110 01 1578899999999999998763
No 193
>PRK10422 lipopolysaccharide core biosynthesis protein; Provisional
Probab=22.65 E-value=1.4e+02 Score=33.45 Aligned_cols=72 Identities=10% Similarity=0.181 Sum_probs=46.0
Q ss_pred EEEEEeeCCC-CCcccHHHHHHHHHHcCCCEEEEceeCCcccC-------------CCCeeeeccchhHHHHHHHHHHcC
Q 046146 33 FLSASIHYPR-SVPAMWPELIQAAKEGGLNTIESYVFWSGHEL-------------SPGKYSFEGRYDLVKFVKTVQQAG 98 (829)
Q Consensus 33 ~~sG~~Hy~R-~~~~~W~d~l~k~ka~GlNtV~~yv~Wn~hEp-------------~~G~~dF~g~~dl~~fl~~a~~~G 98 (829)
+.-|+-+..| ||++.|.+.++.+++.|+..| +.+.-.|. .+...|..|..+|..+..+.+...
T Consensus 188 i~pga~~~~K~Wp~e~fa~l~~~L~~~~~~vv---l~ggp~e~e~~~~~~i~~~~~~~~~~~l~g~~sL~el~ali~~a~ 264 (352)
T PRK10422 188 IQPTARQIFKCWDNDKFSAVIDALQARGYEVV---LTSGPDKDDLACVNEIAQGCQTPPVTALAGKTTFPELGALIDHAQ 264 (352)
T ss_pred EecCCCccccCCCHHHHHHHHHHHHHCCCeEE---EEcCCChHHHHHHHHHHHhcCCCccccccCCCCHHHHHHHHHhCC
Confidence 3334434444 799999999999988787544 44443221 123466677777777777777777
Q ss_pred cEEEEecCc
Q 046146 99 MYMLLRIGP 107 (829)
Q Consensus 99 L~VilrpGP 107 (829)
++|---.||
T Consensus 265 l~v~nDSGp 273 (352)
T PRK10422 265 LFIGVDSAP 273 (352)
T ss_pred EEEecCCHH
Confidence 766665554
No 194
>cd04882 ACT_Bt0572_2 C-terminal ACT domain of a novel protein composed of just two ACT domains. Included in this CD is the C-terminal ACT domain of a novel protein composed of just two ACT domains, as seen in the yet uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related proteins. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=22.64 E-value=1.7e+02 Score=23.56 Aligned_cols=55 Identities=22% Similarity=0.343 Sum_probs=38.7
Q ss_pred cccHHHHHHHHHHcCCCEEEEceeCCcccCCCCeeeeccchhHHHHHHHHHHcCcEE
Q 046146 45 PAMWPELIQAAKEGGLNTIESYVFWSGHELSPGKYSFEGRYDLVKFVKTVQQAGMYM 101 (829)
Q Consensus 45 ~~~W~d~l~k~ka~GlNtV~~yv~Wn~hEp~~G~~dF~g~~dl~~fl~~a~~~GL~V 101 (829)
|..-.+.+.-+.+.|+|.+.++. +...+.....+-|.-. +.++.++..+++|..|
T Consensus 10 pG~L~~i~~~l~~~~~nI~~i~~-~~~~~~~~~~v~~~ve-~~~~~~~~L~~~G~~v 64 (65)
T cd04882 10 PGGLHEILQILSEEGINIEYMYA-FVEKKGGKALLIFRTE-DIEKAIEVLQERGVEL 64 (65)
T ss_pred CcHHHHHHHHHHHCCCChhheEE-EccCCCCeEEEEEEeC-CHHHHHHHHHHCCceE
Confidence 34456788889999999998886 3333234455555433 4889999999999765
No 195
>cd03789 GT1_LPS_heptosyltransferase Lipopolysaccharide heptosyltransferase is involved in the biosynthesis of lipooligosaccharide (LOS). Lipopolysaccharide (LPS) is a major component of the outer membrane of gram-negative bacteria. LPS heptosyltransferase transfers heptose molecules from ADP-heptose to 3-deoxy-D-manno-octulosonic acid (KDO), a part of the inner core component of LPS. This family belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=22.21 E-value=1.1e+02 Score=32.81 Aligned_cols=79 Identities=13% Similarity=0.138 Sum_probs=56.5
Q ss_pred EeEEEEEEeeCCC-CCcccHHHHHHHHHHcCCCEEEEceeCCcccC-----------CCCeeeeccchhHHHHHHHHHHc
Q 046146 30 RKLFLSASIHYPR-SVPAMWPELIQAAKEGGLNTIESYVFWSGHEL-----------SPGKYSFEGRYDLVKFVKTVQQA 97 (829)
Q Consensus 30 p~~~~sG~~Hy~R-~~~~~W~d~l~k~ka~GlNtV~~yv~Wn~hEp-----------~~G~~dF~g~~dl~~fl~~a~~~ 97 (829)
-+.+..|+-+..| ++.+.|.+.++++++.|++.|-+. .-.|. .+...++.|..+|..++.+.+..
T Consensus 123 ~i~i~~~~~~~~k~w~~~~~~~l~~~l~~~~~~ivl~g---~~~e~~~~~~i~~~~~~~~~~~~~~~~~l~e~~~li~~~ 199 (279)
T cd03789 123 VVVLPPGASGPAKRWPAERFAALADRLLARGARVVLTG---GPAERELAEEIAAALGGPRVVNLAGKTSLRELAALLARA 199 (279)
T ss_pred EEEECCCCCCccccCCHHHHHHHHHHHHHCCCEEEEEe---chhhHHHHHHHHHhcCCCccccCcCCCCHHHHHHHHHhC
Confidence 3444445555555 799999999999998888766443 22211 24567888888999999999999
Q ss_pred CcEEEEecCccccc
Q 046146 98 GMYMLLRIGPFVAA 111 (829)
Q Consensus 98 GL~VilrpGPyica 111 (829)
.|.|-...||.--|
T Consensus 200 ~l~I~~Dsg~~HlA 213 (279)
T cd03789 200 DLVVTNDSGPMHLA 213 (279)
T ss_pred CEEEeeCCHHHHHH
Confidence 99888888775433
No 196
>PF14307 Glyco_tran_WbsX: Glycosyltransferase WbsX
Probab=21.58 E-value=1.3e+02 Score=33.93 Aligned_cols=42 Identities=24% Similarity=0.203 Sum_probs=26.6
Q ss_pred eCCcEEECCEEeEEEEEEeeCCCC-CcccHHHHH-HHHHHcCCCEEE
Q 046146 20 DHRSLIIHGRRKLFLSASIHYPRS-VPAMWPELI-QAAKEGGLNTIE 64 (829)
Q Consensus 20 d~~~~~idGkp~~~~sG~~Hy~R~-~~~~W~d~l-~k~ka~GlNtV~ 64 (829)
|.+.+.|||||+++|= .+.-+ ....+-+.+ +.+|++|+.-+-
T Consensus 150 D~rYikVdGKPv~~Iy---~p~~~pd~~~~~~~wr~~a~~~G~~giy 193 (345)
T PF14307_consen 150 DPRYIKVDGKPVFLIY---RPGDIPDIKEMIERWREEAKEAGLPGIY 193 (345)
T ss_pred CCCceeECCEEEEEEE---CcccccCHHHHHHHHHHHHHHcCCCceE
Confidence 7788999999999983 33222 222233333 456888887443
No 197
>cd06415 GH25_Cpl1-like Cpl-1 lysin (also known as Cpl-9 lysozyme / muramidase) is a bacterial cell wall endolysin encoded by the pneumococcal bacteriophage Cp-1, which cleaves the glycosidic N-acetylmuramoyl-(beta1,4)-N-acetylglucosamine bonds of the pneumococcal glycan chain, thus acting as an enzymatic antimicrobial agent (an enzybiotic) against streptococcal infections. Cpl-1 belongs to the CP family of lysozymes (CPL lysozymes) which includes the Cpl-7 lysin. Cpl-1 has a glycosyl hydrolase family 25 (GH25) catalytic domain with an irregular (beta/alpha)5-beta3 barrel and a C-terminal cell wall-anchoring module formed by six similar choline-binding repeats (ChBr's). The ChBr's facilitate the anchoring of Cpl-1 to the choline-containing teichoic acid of the pneumococcal cell wall. Other members of this domain family have an N-terminal CHAP (cysteine, histidine-dependent amidohydrolases/peptidases) domain similar to that of the firmicute CHAP lysins and associated with endopeptidase
Probab=21.49 E-value=3.4e+02 Score=27.86 Aligned_cols=25 Identities=20% Similarity=0.268 Sum_probs=18.2
Q ss_pred hhHHHHHHHHHHcCcEEEEecCccc
Q 046146 85 YDLVKFVKTVQQAGMYMLLRIGPFV 109 (829)
Q Consensus 85 ~dl~~fl~~a~~~GL~VilrpGPyi 109 (829)
..+.+|++.+++.|.+++|=.+++-
T Consensus 108 ~~~~~f~~~v~~~G~~~~iYt~~~~ 132 (196)
T cd06415 108 SAILAFMDTIKDAGYKPMLYSYKPL 132 (196)
T ss_pred HHHHHHHHHHHHhCCCcEEEecHHH
Confidence 3567888888888887777666653
No 198
>PTZ00372 endonuclease 4-like protein; Provisional
Probab=21.12 E-value=4.7e+02 Score=30.56 Aligned_cols=79 Identities=11% Similarity=0.063 Sum_probs=51.7
Q ss_pred HHHHHHHHHcCCCEEEEcee----CCcccCCCCeeeeccchhHHHHHHHHHHcCcE--EEEecCcccccccCCCCCCccc
Q 046146 49 PELIQAAKEGGLNTIESYVF----WSGHELSPGKYSFEGRYDLVKFVKTVQQAGMY--MLLRIGPFVAAEYNYGGVPVWL 122 (829)
Q Consensus 49 ~d~l~k~ka~GlNtV~~yv~----Wn~hEp~~G~~dF~g~~dl~~fl~~a~~~GL~--VilrpGPyicaEw~~GG~P~WL 122 (829)
...++.+.+.|.|++++++- |..-+..+ .++++|.++++++||. .++-=+||.
T Consensus 144 ~~a~~~a~~~g~~afqiF~~npr~w~~~~~~~--------~~~~~f~~~~~~~gi~~~~i~~HapYl------------- 202 (413)
T PTZ00372 144 DNSPINAYNIAGQAFALFLKNQRTWNSPPLSD--------ETIDKFKENCKKYNYDPKFILPHGSYL------------- 202 (413)
T ss_pred HHHHHHHHHcCCCEEEEEcCCCccCCCCCCCH--------HHHHHHHHHHHHcCCCcceEEeecCce-------------
Confidence 34678899999999999974 65444333 3799999999999884 244456663
Q ss_pred cccCCeeeecCChhHHHHHHHHHHHHHHHHh
Q 046146 123 HYIPGSVFRSYSKPFMSYMQKFMTLIVDMMK 153 (829)
Q Consensus 123 ~~~p~~~~R~~~~~y~~~~~~~~~~l~~~i~ 153 (829)
+.+=+.|+.-++...++|.+-+.+-+
T Consensus 203 -----INLASpd~e~rekSv~~~~~eL~rA~ 228 (413)
T PTZ00372 203 -----INLANPDKEKREKSYDAFLDDLQRCE 228 (413)
T ss_pred -----ecCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 12334455555665555555555544
No 199
>PF08306 Glyco_hydro_98M: Glycosyl hydrolase family 98; InterPro: IPR013191 This domain is the putative catalytic domain of glycosyl hydrolase family 98 proteins.; PDB: 2VNO_B 2VNR_A 2VNG_B 2WMH_A 2WMG_A 2WMF_A 2WMK_A 2WMJ_B 2WMI_B.
Probab=21.00 E-value=72 Score=35.66 Aligned_cols=59 Identities=17% Similarity=0.233 Sum_probs=36.8
Q ss_pred EEEEEEee------CCCCCcccHHHHHHHHHHc-CCCEEEEceeCCcccCCCCeeeeccchhHHHHHHHHHHcCcEE
Q 046146 32 LFLSASIH------YPRSVPAMWPELIQAAKEG-GLNTIESYVFWSGHELSPGKYSFEGRYDLVKFVKTVQQAGMYM 101 (829)
Q Consensus 32 ~~~sG~~H------y~R~~~~~W~d~l~k~ka~-GlNtV~~yv~Wn~hEp~~G~~dF~g~~dl~~fl~~a~~~GL~V 101 (829)
++.||. | +.+++.+.|++-+|+--.+ |+|..|-|--|+ ++.. ....++|++|++.|-|.
T Consensus 104 q~~sgG-~~~~y~~~~~~~~~~~~e~fr~Ypnf~G~n~~EqfWgf~--~~~~--------~~~A~lLkl~akYGGy~ 169 (324)
T PF08306_consen 104 QPSSGG-HFPDYSAYHDIENTWYEEFFRDYPNFQGFNYAEQFWGFD--DPGS--------EHFADLLKLCAKYGGYF 169 (324)
T ss_dssp EEEECC-G-TTT-GCCG--HHHHHHHHHH-TTEEEEEEE--TTS----TTHH--------HHHHHHHHHHHHTT-EE
T ss_pred EecCCC-CCCCccccccCChHHHHHHHHhCccccccccHhhheecC--Cchh--------HHHHHHHHHHHHhCceE
Confidence 456777 8 3445666677777777665 999888764444 4333 37889999999999988
No 200
>PLN02540 methylenetetrahydrofolate reductase
Probab=20.89 E-value=2.2e+02 Score=34.50 Aligned_cols=90 Identities=16% Similarity=0.245 Sum_probs=62.7
Q ss_pred HHHHHHHcCCCEEEEceeCCcccCCCCeeeeccchhHHHHHHHHHHcC--cEEEEecCcccc-------cccCCCCCCcc
Q 046146 51 LIQAAKEGGLNTIESYVFWSGHELSPGKYSFEGRYDLVKFVKTVQQAG--MYMLLRIGPFVA-------AEYNYGGVPVW 121 (829)
Q Consensus 51 ~l~k~ka~GlNtV~~yv~Wn~hEp~~G~~dF~g~~dl~~fl~~a~~~G--L~VilrpGPyic-------aEw~~GG~P~W 121 (829)
+|++-.++|.+.+-|-.| ||.+ .+.+|++.|+++| +.||...-|-.. ++|..--+|.|
T Consensus 161 ~Lk~KvdAGAdFiITQlf----------FD~d---~f~~f~~~~r~~Gi~vPIipGImPI~S~k~l~r~~~l~Gi~IP~~ 227 (565)
T PLN02540 161 YLKEKVDAGADLIITQLF----------YDTD---IFLKFVNDCRQIGITCPIVPGIMPINNYKGFLRMTGFCKTKIPAE 227 (565)
T ss_pred HHHHHHHcCCCEEeeccc----------cCHH---HHHHHHHHHHhcCCCCCEEeeecccCCHHHHHHHHhccCCcCCHH
Confidence 344444679999998875 5666 7899999999998 567777777553 45666667999
Q ss_pred ccccCCeeeecCChhHHHHHHHHHHHHHHHHhh
Q 046146 122 LHYIPGSVFRSYSKPFMSYMQKFMTLIVDMMKK 154 (829)
Q Consensus 122 L~~~p~~~~R~~~~~y~~~~~~~~~~l~~~i~~ 154 (829)
+.+.=. ....++...++.--++..++++.|.+
T Consensus 228 i~~rLe-~~kddde~v~~~Gieia~e~~~~L~~ 259 (565)
T PLN02540 228 ITAALE-PIKDNDEAVKAYGIHLGTEMCKKILA 259 (565)
T ss_pred HHHHHH-hcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 886211 12344556677777778888888863
No 201
>cd06570 GH20_chitobiase-like_1 A functionally uncharacterized subgroup of the Glycosyl hydrolase family 20 (GH20) catalytic domain found in proteins similar to the chitobiase of Serratia marcescens, a beta-N-1,4-acetylhexosaminidase that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. This subgroup lacks the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=20.85 E-value=3.4e+02 Score=30.26 Aligned_cols=60 Identities=13% Similarity=0.081 Sum_probs=46.1
Q ss_pred CCcccHHHHHHHHHHcCCCEEEEce----eCCcccCC------CC----eeeeccchhHHHHHHHHHHcCcEEEEec
Q 046146 43 SVPAMWPELIQAAKEGGLNTIESYV----FWSGHELS------PG----KYSFEGRYDLVKFVKTVQQAGMYMLLRI 105 (829)
Q Consensus 43 ~~~~~W~d~l~k~ka~GlNtV~~yv----~Wn~hEp~------~G----~~dF~g~~dl~~fl~~a~~~GL~Vilrp 105 (829)
.+.+..++.|+.|...++|+...++ -|.+--+. .| .|.- .|+..+++.|++.|+.||--+
T Consensus 15 ~~~~~ik~~Id~ma~~KlN~lh~HltDd~~~rle~~~~P~lt~~g~~~~~yT~---~di~elv~yA~~rgI~vIPEI 88 (311)
T cd06570 15 IPVAVIKRQLDAMASVKLNVFHWHLTDDQGFRIESKKYPKLQQKASDGLYYTQ---EQIREVVAYARDRGIRVVPEI 88 (311)
T ss_pred cCHHHHHHHHHHHHHhCCeEEEEEEecCCCceeecCCCccccccCCCCCccCH---HHHHHHHHHHHHcCCEEEEee
Confidence 4688899999999999999999997 47542111 12 2333 499999999999999999654
No 202
>KOG3698 consensus Hyaluronoglucosaminidase [Posttranslational modification, protein turnover, chaperones]
Probab=20.76 E-value=1.3e+02 Score=35.99 Aligned_cols=72 Identities=22% Similarity=0.504 Sum_probs=51.3
Q ss_pred ECCEEeEEEEEEee--CCC-CCcccHHHHHHHHHHcCCCEEEEcee-----------CCcccCCCCeeeeccchhHHHHH
Q 046146 26 IHGRRKLFLSASIH--YPR-SVPAMWPELIQAAKEGGLNTIESYVF-----------WSGHELSPGKYSFEGRYDLVKFV 91 (829)
Q Consensus 26 idGkp~~~~sG~~H--y~R-~~~~~W~d~l~k~ka~GlNtV~~yv~-----------Wn~hEp~~G~~dF~g~~dl~~fl 91 (829)
.+|+|.+ ++|-+- |-| |++|.=++.+++++.+|++ ||.. |-- -|+-+-..-|..+|
T Consensus 11 A~g~r~f-iCGVvEGFYGRPWt~EQRK~LFrrl~~~gl~---tYlYAPKDDyKHR~~WRE------lY~vEEa~~L~~Li 80 (891)
T KOG3698|consen 11 AVGNRKF-ICGVVEGFYGRPWTPEQRKHLFRRLNQLGLT---TYLYAPKDDYKHRSLWRE------LYNVEEATYLRNLI 80 (891)
T ss_pred cccccee-EEEeeccccCCCCCHHHHHHHHHHHHhcccc---eeeecccchhHHHHHHHH------HhhhHHHHHHHHHH
Confidence 3566544 566654 778 6999999999999999998 5653 421 23333334688899
Q ss_pred HHHHHcCcEEEEecCc
Q 046146 92 KTVQQAGMYMLLRIGP 107 (829)
Q Consensus 92 ~~a~~~GL~VilrpGP 107 (829)
+.|+|+++..+-.+.|
T Consensus 81 ~aAke~~i~F~YAiSP 96 (891)
T KOG3698|consen 81 EAAKENNINFVYAISP 96 (891)
T ss_pred HHHHhcCceEEEEcCC
Confidence 9999999997755543
No 203
>COG1523 PulA Type II secretory pathway, pullulanase PulA and related glycosidases [Carbohydrate transport and metabolism]
Probab=20.41 E-value=1.5e+02 Score=36.96 Aligned_cols=55 Identities=25% Similarity=0.373 Sum_probs=40.0
Q ss_pred HHHHHHHcCCCEEEE-ceeCCcccCCC--------------------Ceeeecc-----chhHHHHHHHHHHcCcEEEEe
Q 046146 51 LIQAAKEGGLNTIES-YVFWSGHELSP--------------------GKYSFEG-----RYDLVKFVKTVQQAGMYMLLR 104 (829)
Q Consensus 51 ~l~k~ka~GlNtV~~-yv~Wn~hEp~~--------------------G~~dF~g-----~~dl~~fl~~a~~~GL~Vilr 104 (829)
.|.-+|.+|+++|+. +|+.-..|+.. |.|--+. .+.+..+++.++++||-|||-
T Consensus 205 ~i~yLk~LGvtaVeLLPV~~~~~~~~l~~~gl~n~WGYdP~~fFAp~~~Yss~p~p~~~i~EfK~mV~~lHkaGI~VILD 284 (697)
T COG1523 205 IIDYLKDLGVTAVELLPVFDFYDEPHLDKSGLNNNWGYDPLNFFAPEGRYASNPEPATRIKEFKDMVKALHKAGIEVILD 284 (697)
T ss_pred HHHHHHHhCCceEEEecceEEeccccccccccccccCCCcccccCCCccccCCCCcchHHHHHHHHHHHHHHcCCEEEEE
Confidence 489999999999995 46655444443 2332223 357888999999999999997
Q ss_pred c
Q 046146 105 I 105 (829)
Q Consensus 105 p 105 (829)
.
T Consensus 285 V 285 (697)
T COG1523 285 V 285 (697)
T ss_pred E
Confidence 5
No 204
>PRK06703 flavodoxin; Provisional
Probab=20.38 E-value=4.1e+02 Score=25.76 Aligned_cols=103 Identities=11% Similarity=0.084 Sum_probs=58.9
Q ss_pred ECCEEeEEEEEEeeCCCCCcccHHHHHHHHHHcCCCEEEEceeCCcccCCCCeeeeccchhHHHHHHHHHHcCcEEEEec
Q 046146 26 IHGRRKLFLSASIHYPRSVPAMWPELIQAAKEGGLNTIESYVFWSGHELSPGKYSFEGRYDLVKFVKTVQQAGMYMLLRI 105 (829)
Q Consensus 26 idGkp~~~~sG~~Hy~R~~~~~W~d~l~k~ka~GlNtV~~yv~Wn~hEp~~G~~dF~g~~dl~~fl~~a~~~GL~Vilrp 105 (829)
+..-..++++-..+-.-.+|..+++-+..++..-++...+.+|-...-. |.. .......+-+..++.|..++.+|
T Consensus 46 l~~~d~viigspt~~~g~~p~~~~~f~~~l~~~~l~~k~~~vfg~g~~~----y~~-~~~a~~~l~~~l~~~G~~~~~~~ 120 (151)
T PRK06703 46 LLAYDGIILGSYTWGDGDLPYEAEDFHEDLENIDLSGKKVAVFGSGDTA----YPL-FCEAVTIFEERLVERGAELVQEG 120 (151)
T ss_pred HhcCCcEEEEECCCCCCcCcHHHHHHHHHHhcCCCCCCEEEEEccCCCC----hHH-HHHHHHHHHHHHHHCCCEEcccC
Confidence 3344556665544433445666777788787666665556666321000 110 12355667777788999877764
Q ss_pred CcccccccCCCCCCccccccCCeeeecCChhHHHHHHHHHHHHHHHHh
Q 046146 106 GPFVAAEYNYGGVPVWLHYIPGSVFRSYSKPFMSYMQKFMTLIVDMMK 153 (829)
Q Consensus 106 GPyicaEw~~GG~P~WL~~~p~~~~R~~~~~y~~~~~~~~~~l~~~i~ 153 (829)
+- ++.-.++..-++++++|.++|++.++
T Consensus 121 ---~~-----------------~~~~p~~~~~~~~~~~~~~~~~~~~~ 148 (151)
T PRK06703 121 ---LK-----------------IELAPETDEDVEKCSNFAIAFAEKFA 148 (151)
T ss_pred ---eE-----------------EecCCCchhHHHHHHHHHHHHHHHHH
Confidence 10 01111124567888888888887776
No 205
>PF12876 Cellulase-like: Sugar-binding cellulase-like; InterPro: IPR024778 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This entry represents a family of putative cellulase enzymes.; PDB: 3GYC_B.
Probab=20.23 E-value=1.2e+02 Score=27.02 Aligned_cols=46 Identities=17% Similarity=0.204 Sum_probs=25.5
Q ss_pred cCCCcEEEeccccc-cccchhhc----c--CcHHHHHHHHHH---HHhCCCcccee
Q 046146 160 SQGGPIILAQVENE-YQWYEQFY----K--GGKEYAMWAASM---AVSQNTGVPWI 205 (829)
Q Consensus 160 ~~gGpII~~QiENE-yg~~~~~y----~--~~~~y~~~l~~~---~~~~g~~vp~~ 205 (829)
.....|.+|+|=|| -++....| + ....|.+||+++ +|+.+-+.|+.
T Consensus 6 ~~~~~Il~Wdl~NE~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~iR~~dP~~pvt 61 (88)
T PF12876_consen 6 GYDPRILAWDLWNEPPNNWADGYPAEWGDPKAEAYAEWLKEAFRWIRAVDPSQPVT 61 (88)
T ss_dssp T-GGGEEEEESSTTTT-TT-TT-TT-TT-TTSHHHHHHHHHHHHHHHTT-TTS-EE
T ss_pred cCCCCEEEEEeecCCCCcccccccccccchhHHHHHHHHHHHHHHHHHhCCCCcEE
Confidence 34568999999999 55221111 1 245566666665 56667777764
No 206
>PRK10658 putative alpha-glucosidase; Provisional
Probab=20.11 E-value=2.3e+02 Score=35.07 Aligned_cols=65 Identities=20% Similarity=0.329 Sum_probs=46.0
Q ss_pred cccHHHHHHHHHHcCCCEEEEc--eeCCcccC-CCCeeeeccch--hHHHHHHHHHHcCcEEEEecCccccc
Q 046146 45 PAMWPELIQAAKEGGLNTIESY--VFWSGHEL-SPGKYSFEGRY--DLVKFVKTVQQAGMYMLLRIGPFVAA 111 (829)
Q Consensus 45 ~~~W~d~l~k~ka~GlNtV~~y--v~Wn~hEp-~~G~~dF~g~~--dl~~fl~~a~~~GL~VilrpGPyica 111 (829)
.+.-.+.++++|+.|+-.=.+. .+|- .. .-+.|.|+-.+ |..++++..++.|++|++..=|||..
T Consensus 282 e~~v~~~~~~~r~~~iP~d~i~lD~~w~--~~~~~~~f~wd~~~FPdp~~mi~~L~~~G~k~~~~i~P~i~~ 351 (665)
T PRK10658 282 EATVNSFIDGMAERDLPLHVFHFDCFWM--KEFQWCDFEWDPRTFPDPEGMLKRLKAKGLKICVWINPYIAQ 351 (665)
T ss_pred HHHHHHHHHHHHHcCCCceEEEEchhhh--cCCceeeeEEChhhCCCHHHHHHHHHHCCCEEEEeccCCcCC
Confidence 3445677899999999643333 3453 22 12456665332 88999999999999999999999864
No 207
>TIGR02455 TreS_stutzeri trehalose synthase, Pseudomonas stutzeri type. Trehalose synthase catalyzes a one-step conversion of maltose to trehalose. This is an alternative to the OtsAB and TreYZ pathways. This family includes a characterized example from Pseudomonas stutzeri plus very closely related sequences from other Pseudomonads. Cutoff scores are set to find a more distantly related sequence from Desulfovibrio vulgaris, likely to be functionally equivalent, between trusted and noise limits.
Probab=20.11 E-value=2.5e+02 Score=34.61 Aligned_cols=75 Identities=19% Similarity=0.227 Sum_probs=52.6
Q ss_pred CcccHHHHHHHHHHcCCCEEEEc-ee-----CC--cccCCCCeee---------eccchhHHHHHHHHHHcCcEEEEecC
Q 046146 44 VPAMWPELIQAAKEGGLNTIESY-VF-----WS--GHELSPGKYS---------FEGRYDLVKFVKTVQQAGMYMLLRIG 106 (829)
Q Consensus 44 ~~~~W~d~l~k~ka~GlNtV~~y-v~-----Wn--~hEp~~G~~d---------F~g~~dl~~fl~~a~~~GL~VilrpG 106 (829)
.+.+|+ .++.+|+++|=+- ++ |. +.--.-|-|| |....|++++++.|++.||+||+-.=
T Consensus 76 ~~~~wd----yL~~LGV~~iwl~P~~~SGgi~g~~~tP~~D~gyDi~d~~Idp~~GT~eDf~~L~~~Ah~~G~~vi~DlV 151 (688)
T TIGR02455 76 DDALWK----ALSEIGVQGIHNGPIKLSGGIRGREFTPSIDGNFDRISFDIDPLLGSEEELIQLSRMAAAHNAITIDDII 151 (688)
T ss_pred ChHHHH----HHHHhCCCEEEeCcceecccccccCCCCCCCCCCCcccCccCcccCCHHHHHHHHHHHHHCCCEEEEEeC
Confidence 455555 7889999998754 22 43 2222245565 33347999999999999999997542
Q ss_pred --------cccccccCCCCCCccc
Q 046146 107 --------PFVAAEYNYGGVPVWL 122 (829)
Q Consensus 107 --------PyicaEw~~GG~P~WL 122 (829)
|+.-||++.+-+|.|.
T Consensus 152 pnHTs~ghdF~lAr~~~~~Y~g~Y 175 (688)
T TIGR02455 152 PAHTGKGADFRLAELAHGDYPGLY 175 (688)
T ss_pred CCCCCCCcchHHHhhcCCCCCCce
Confidence 4777888888888877
Done!