Query 046151
Match_columns 209
No_of_seqs 171 out of 437
Neff 5.5
Searched_HMMs 46136
Date Fri Mar 29 09:12:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046151.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/046151hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd07816 Bet_v1-like Ligand-bin 99.9 3.1E-26 6.8E-31 184.5 16.3 126 63-192 5-137 (148)
2 PF00407 Bet_v_1: Pathogenesis 99.8 5.8E-20 1.3E-24 149.8 14.4 115 64-181 9-127 (151)
3 cd07821 PYR_PYL_RCAR_like Pyra 99.7 6E-16 1.3E-20 118.2 17.3 135 64-205 6-140 (140)
4 PF10604 Polyketide_cyc2: Poly 99.7 3.2E-14 7E-19 108.7 18.9 135 60-205 3-139 (139)
5 cd08866 SRPBCC_11 Ligand-bindi 99.6 1.9E-13 4E-18 106.6 15.4 136 64-206 4-144 (144)
6 cd08865 SRPBCC_10 Ligand-bindi 99.5 7.2E-12 1.6E-16 95.3 16.0 135 64-206 4-140 (140)
7 cd08861 OtcD1_ARO-CYC_like N-t 99.4 2.4E-11 5.2E-16 94.5 13.7 136 64-206 4-142 (142)
8 cd08862 SRPBCC_Smu440-like Lig 99.4 7.3E-11 1.6E-15 90.6 15.8 132 64-206 6-138 (138)
9 cd07819 SRPBCC_2 Ligand-bindin 99.3 2.6E-10 5.6E-15 87.5 16.1 132 64-203 7-139 (140)
10 cd07822 SRPBCC_4 Ligand-bindin 99.2 7.8E-10 1.7E-14 84.3 15.4 135 64-205 5-141 (141)
11 cd07818 SRPBCC_1 Ligand-bindin 99.2 1.4E-09 3E-14 85.4 15.8 138 62-206 5-150 (150)
12 cd07817 SRPBCC_8 Ligand-bindin 99.2 9.4E-10 2E-14 84.5 13.9 130 64-205 5-138 (139)
13 cd07813 COQ10p_like Coenzyme Q 99.2 5.7E-10 1.2E-14 87.0 12.6 133 65-206 5-137 (138)
14 cd07812 SRPBCC START/RHO_alpha 99.2 3.1E-09 6.8E-14 78.0 15.9 134 63-202 3-139 (141)
15 cd07814 SRPBCC_CalC_Aha1-like 99.1 3.5E-09 7.7E-14 81.1 13.3 135 63-206 4-139 (139)
16 cd08860 TcmN_ARO-CYC_like N-te 99.1 5.3E-09 1.1E-13 84.4 14.4 138 63-208 5-146 (146)
17 cd07825 SRPBCC_7 Ligand-bindin 99.0 1.8E-08 3.9E-13 78.4 13.4 138 63-205 4-144 (144)
18 cd07824 SRPBCC_6 Ligand-bindin 98.9 1.4E-07 3.1E-12 74.6 15.1 130 65-203 7-145 (146)
19 PF03364 Polyketide_cyc: Polyk 98.7 2E-07 4.4E-12 71.4 10.9 129 67-201 1-130 (130)
20 cd05018 CoxG Carbon monoxide d 98.7 4E-07 8.6E-12 70.1 12.4 130 64-204 6-143 (144)
21 cd07820 SRPBCC_3 Ligand-bindin 98.6 3.4E-06 7.4E-11 66.0 14.6 108 64-179 4-114 (137)
22 cd07823 SRPBCC_5 Ligand-bindin 98.3 2E-05 4.4E-10 62.2 13.4 134 64-206 4-146 (146)
23 PRK10724 hypothetical protein; 98.2 3.1E-05 6.8E-10 63.6 12.4 134 64-206 20-153 (158)
24 cd08899 SRPBCC_CalC_Aha1-like_ 98.2 4.8E-05 1E-09 61.3 12.6 127 61-208 13-139 (157)
25 cd08893 SRPBCC_CalC_Aha1-like_ 98.1 0.00017 3.6E-09 55.0 13.7 129 63-206 4-136 (136)
26 cd08898 SRPBCC_CalC_Aha1-like_ 98.1 0.00014 3E-09 56.2 12.9 132 64-206 6-145 (145)
27 COG3427 Carbon monoxide dehydr 97.8 0.00024 5.3E-09 58.3 10.3 103 65-176 7-112 (146)
28 cd08894 SRPBCC_CalC_Aha1-like_ 97.8 0.00069 1.5E-08 53.1 12.4 131 62-206 3-139 (139)
29 cd08876 START_1 Uncharacterize 97.7 0.0036 7.9E-08 51.5 16.6 136 64-204 46-194 (195)
30 cd08900 SRPBCC_CalC_Aha1-like_ 97.7 0.002 4.2E-08 50.7 13.9 136 62-206 3-143 (143)
31 cd08896 SRPBCC_CalC_Aha1-like_ 97.7 0.0017 3.6E-08 51.3 13.0 134 62-205 3-145 (146)
32 cd08895 SRPBCC_CalC_Aha1-like_ 97.5 0.0069 1.5E-07 47.8 14.9 133 62-206 3-146 (146)
33 cd08897 SRPBCC_CalC_Aha1-like_ 97.5 0.0018 3.9E-08 50.3 11.1 127 62-206 3-133 (133)
34 PF08327 AHSA1: Activator of H 97.5 0.0015 3.2E-08 49.1 9.5 121 68-205 1-124 (124)
35 cd07826 SRPBCC_CalC_Aha1-like_ 97.5 0.0051 1.1E-07 48.6 13.0 136 62-205 3-141 (142)
36 COG5637 Predicted integral mem 97.4 0.0031 6.7E-08 53.8 11.9 138 55-207 68-211 (217)
37 cd08891 SRPBCC_CalC Ligand-bin 97.4 0.0064 1.4E-07 48.1 12.5 132 63-206 4-149 (149)
38 cd08892 SRPBCC_Aha1 Putative h 97.3 0.01 2.2E-07 46.0 13.3 121 62-205 3-125 (126)
39 COG3832 Uncharacterized conser 97.2 0.0086 1.9E-07 48.3 11.9 133 62-205 11-148 (149)
40 PF06240 COXG: Carbon monoxide 97.0 0.01 2.2E-07 47.0 10.6 100 65-175 3-107 (140)
41 cd08901 SRPBCC_CalC_Aha1-like_ 97.0 0.023 4.9E-07 44.4 11.8 126 64-206 5-132 (136)
42 PF08982 DUF1857: Domain of un 95.6 0.13 2.9E-06 42.1 9.3 59 71-137 20-79 (149)
43 cd08863 SRPBCC_DUF1857 DUF1857 95.5 0.91 2E-05 37.1 14.0 63 71-141 19-82 (141)
44 COG4276 Uncharacterized conser 95.1 1.6 3.4E-05 35.9 13.8 131 65-203 8-149 (153)
45 cd08868 START_STARD1_3_like Ch 94.9 1.4 3E-05 37.0 13.9 151 54-207 44-208 (208)
46 cd08905 START_STARD1-like Chol 94.8 1.4 3E-05 37.4 13.7 146 58-206 49-208 (209)
47 cd08874 START_STARD9-like C-te 93.5 2.2 4.8E-05 36.5 12.4 46 65-110 51-96 (205)
48 PTZ00220 Activator of HSP-90 A 92.9 1.2 2.5E-05 35.0 9.1 21 67-87 1-21 (132)
49 cd08906 START_STARD3-like Chol 92.0 7 0.00015 33.3 15.2 146 58-206 49-208 (209)
50 cd08871 START_STARD10-like Lip 91.7 7.4 0.00016 32.9 16.0 135 67-206 56-202 (222)
51 cd08877 START_2 Uncharacterize 91.4 4.1 8.9E-05 34.3 11.4 153 46-206 33-214 (215)
52 cd08911 START_STARD7-like Lipi 90.6 9.5 0.00021 32.2 14.8 150 55-206 42-206 (207)
53 cd08903 START_STARD5-like Lipi 90.4 10 0.00022 32.1 14.3 141 63-206 50-207 (208)
54 COG2867 Oligoketide cyclase/li 89.5 5.1 0.00011 33.0 9.8 93 65-162 8-100 (146)
55 cd08869 START_RhoGAP C-termina 85.0 22 0.00047 29.8 13.7 134 64-204 49-194 (197)
56 PF10698 DUF2505: Protein of u 85.0 19 0.00041 29.1 12.1 135 63-205 3-156 (159)
57 cd08913 START_STARD14-like Lip 83.3 29 0.00063 30.5 12.0 55 55-111 78-132 (240)
58 cd08870 START_STARD2_7-like Li 83.2 26 0.00057 29.4 15.0 147 55-205 47-207 (209)
59 cd08873 START_STARD14_15-like 82.5 27 0.00058 30.8 11.4 51 57-108 76-126 (235)
60 cd00177 START Lipid-binding ST 82.1 23 0.0005 27.9 15.7 53 64-117 44-96 (193)
61 smart00234 START in StAR and p 72.1 52 0.0011 26.8 15.1 146 55-206 42-202 (206)
62 cd08867 START_STARD4_5_6-like 70.7 61 0.0013 27.0 13.7 39 62-100 49-89 (206)
63 PF05586 Ant_C: Anthrax recept 68.3 1.7 3.7E-05 33.1 0.1 47 34-84 25-74 (95)
64 cd08908 START_STARD12-like C-t 65.5 87 0.0019 26.8 13.9 136 64-206 57-203 (204)
65 cd08904 START_STARD6-like Lipi 62.6 98 0.0021 26.4 12.8 138 57-200 45-195 (204)
66 cd08914 START_STARD15-like Lip 57.8 9 0.0002 33.8 2.7 55 55-111 75-129 (236)
67 PF01852 START: START domain; 45.5 1.6E+02 0.0035 23.7 14.6 143 56-207 44-203 (206)
68 KOG2936 Uncharacterized conser 42.7 2E+02 0.0043 26.5 8.8 119 59-196 173-292 (301)
69 cd08910 START_STARD2-like Lipi 31.8 3.1E+02 0.0067 23.0 13.7 134 65-205 55-205 (207)
70 cd08902 START_STARD4-like Lipi 31.0 3.5E+02 0.0076 23.4 12.6 141 56-202 45-195 (202)
71 COG0231 Efp Translation elonga 24.0 95 0.002 24.8 3.3 45 90-144 37-81 (131)
72 COG4008 Predicted metal-bindin 23.9 79 0.0017 25.8 2.7 34 31-64 37-70 (153)
73 cd00222 CollagenBindB Collagen 23.6 1.9E+02 0.0041 24.6 5.2 44 107-152 37-80 (187)
74 PF00028 Cadherin: Cadherin do 22.8 1.9E+02 0.0041 20.2 4.4 27 117-143 10-39 (93)
75 PF11248 DUF3046: Protein of u 22.1 64 0.0014 22.9 1.7 18 68-85 43-61 (63)
76 PRK12426 elongation factor P; 21.1 78 0.0017 26.9 2.4 60 74-144 19-79 (185)
No 1
>cd07816 Bet_v1-like Ligand-binding bet_v_1 domain of major pollen allergen of white birch (Betula verrucosa), Bet v 1, and related proteins. This family includes the ligand binding domain of Bet v 1 (the major pollen allergen of white birch, Betula verrucosa) and related proteins. In addition to birch Bet v 1, this family includes other plant intracellular pathogenesis-related class 10 (PR-10) proteins, norcoclaurine synthases (NCSs), cytokinin binding proteins (CSBPs), major latex proteins (MLPs), and ripening-related proteins. It belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Members of this family binds a diverse range of ligands. Bet v 1 can bind brassinosteroids, cytokinins, flavonoids and fatty acids. Hyp-1, a PR-10 from Hypericum perforatum/St. John's wort, catalyzes the condensation of two molecules of emodin to the bioactive naphthodianth
Probab=99.94 E-value=3.1e-26 Score=184.54 Aligned_cols=126 Identities=16% Similarity=0.228 Sum_probs=106.6
Q ss_pred EeEEEecChHHHHHHhhcCCC--CCccccccceeEEccCCCCCcceEEEEEeecCCCcceeeEeeceecCCCCEEEEEEe
Q 046151 63 LAQRIRAPNDVVWSIVRRFDQ--PQTYKHFIKSCSVSDNFTMAVGSTRDVNVISGLPAATSTERLDILDDDRQVTGFSII 140 (209)
Q Consensus 63 v~~~I~APa~~VW~vVrdF~~--~~~w~p~V~s~e~~eGd~g~vGsvR~lt~~~G~p~~~~~ErLd~lDd~~~~~sY~ii 140 (209)
...+|+||+++||+++++|+. ++.|+|+|++|++++|+ +++||||.|+|.+|++..+++|||+.+|+++|+|+|+|+
T Consensus 5 ~e~~i~a~ad~vW~~~~~~~~~~~~~~~p~v~~~~~~eG~-~~~GsvR~~~~~~~~~~~~~kE~l~~~D~~~~~~~y~vv 83 (148)
T cd07816 5 HEVELKVPAEKLWKAFVLDSHLLPPKLPPVIKSVELLEGD-GGPGSIKLITFGPGGKVKYVKERIDAVDEENKTYKYTVI 83 (148)
T ss_pred EEEEecCCHHHHHHHHhcChhhccccccccccEEEEEecC-CCCceEEEEEEcCCCcceEEEEEEEEEcccccEEEEEEE
Confidence 346799999999999999984 78999999999999997 799999999999887777999999999999999999999
Q ss_pred eccc---CccceEEEEEEEeecCCCCceEEEEEEeeecCCCCCC--HHHHHHHHHHH
Q 046151 141 GGEH---RLRNYRSVTSVHGFNRDGAICTVVLESYVVDVPEGNT--EEDTRLFADTV 192 (209)
Q Consensus 141 eG~~---p~~~Y~sti~V~~~~~~g~~~T~v~~s~~~d~P~g~~--~e~a~~~i~~v 192 (209)
+|++ ++++|+++++|.|.+++ +|++.|...|++.+++. .+....++..+
T Consensus 84 eg~~~~~~~~~y~~t~~v~~~~~~---~t~v~Wt~~ye~~~~~~~~p~~~~~~~~~~ 137 (148)
T cd07816 84 EGDVLKDGYKSYKVEIKFVPKGDG---GCVVKWTIEYEKKGDAEPPEEEIKAGKEKA 137 (148)
T ss_pred ecccccCceEEEEEEEEEEECCCC---CEEEEEEEEEEECCCCCCCHHHHHhHHHHH
Confidence 9998 49999999999987432 48999999998766643 33333444433
No 2
>PF00407 Bet_v_1: Pathogenesis-related protein Bet v I family; InterPro: IPR000916 Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Aln g 1, Api g 1, Bet v 1, Car b 1, Cor a 1, Dau c 1, Mal d 1 and Pru a 1. Trees within the order Fagales possess particularly potent allergens, e.g. Bet v1, the major White Birch (Betula verrucosa) pollen antigen. Bet v1 is the main cause of type I allergies observed in early spring. Type I, or immunoglobulin E-mediated (IgE-mediated) allergies affect 1 in 5 people in Europe and North America. Commonly-observed symptoms are hay fever, dermatitis, asthma and, in severe cases, anaphylactic shock. First contact with these allergens results in sensitisation; subsequent contact produces a cross-linking reaction of IgE on mast cells and concomitant release of histamine. The inevitable symptoms of an allergic reaction ensue. Recent NMR analysis [] has confirmed earlier predictions of the protein structure and site of the major T-cell epitope []. The Bet v1 protein comprises 6 anti-parallel beta-strands and 3 alpha-helices. Four of the strands dominate the global fold, and 2 of the helices form a C-terminal amphipathic helical motif. This motif is believed to be the T-cell epitope. Other proteins belonging to this family include the major pollen allergens: Aln g I from Alnus glutinosa (Alder); Api G I from Apium graveolens (Celery); Car b I from Carpinus betulus (European hornbeam); Cor a I from Corylus avellana (European hazel); Mal d I from Malus domestica (Apple). The motif is also found in: the wound-induced protein AoPR1 from Asparagus officinalis (Garden asparagus); pathogenesis-related proteins from Phaseolus vulgaris (Kidney bean) and Petroselinum crispum (Parsley) (PR1-1 and PR1-3); the disease resistance response proteins, STH-2 and STH-21, from Solanum tuberosum (Potato) and pI49, pI176 and DRRG49-C from Pisum sativum (Garden pea); the P. sativum abscisic acid-responsive proteins ABR17 and ABR18; and the stress-induced protein SAM22 from Glycine max (Soybean). ; GO: 0006952 defense response, 0009607 response to biotic stimulus; PDB: 1IFV_A 4A8V_A 4A8U_A 2K7H_A 2QIM_A 3E85_A 1H2O_A 1E09_A 1QMR_A 1FSK_D ....
Probab=99.84 E-value=5.8e-20 Score=149.77 Aligned_cols=115 Identities=17% Similarity=0.300 Sum_probs=92.9
Q ss_pred eEEEecChHHHHHHhhcCCC--CCccccccceeEEccCCCCCcceEEEEEeecCCCcceeeEeeceecCCCCEEEEEEee
Q 046151 64 AQRIRAPNDVVWSIVRRFDQ--PQTYKHFIKSCSVSDNFTMAVGSTRDVNVISGLPAATSTERLDILDDDRQVTGFSIIG 141 (209)
Q Consensus 64 ~~~I~APa~~VW~vVrdF~~--~~~w~p~V~s~e~~eGd~g~vGsvR~lt~~~G~p~~~~~ErLd~lDd~~~~~sY~iie 141 (209)
...+++||+++|++++..+. |+..|+.|+++++++||+|..||||.|+|..|+|..+++||++.+|+++++++|++++
T Consensus 9 E~~~~~~a~k~~ka~~~~~~llpki~P~~i~sve~~eGdgg~gGSIk~~~f~~~~~~~~~Kekve~~D~~~~~~~y~viE 88 (151)
T PF00407_consen 9 EVEVKVSADKLWKAFKSSPHLLPKILPHVIKSVEVVEGDGGPGGSIKKWTFGPGGPFKYVKEKVEAIDEENKTITYTVIE 88 (151)
T ss_dssp EEEESS-HHHHHHHHTTHHHHHHHHSTTTEEEEEEEESSSSTTT-EEEEEEETTSSEEEEEEEEEEEETTTTEEEEEEEE
T ss_pred EEEecCCHHHHHHHHhcCccchhhhChhhceeEEEEccCCCCCCeEEEEEecCCCCcceeEEEEEeecCCCcEEEEEEEe
Confidence 45789999999999997444 8999999999999999854455999999999999999999999999999999999999
Q ss_pred ccc--CccceEEEEEEEeecCCCCceEEEEEEeeecCCCCCC
Q 046151 142 GEH--RLRNYRSVTSVHGFNRDGAICTVVLESYVVDVPEGNT 181 (209)
Q Consensus 142 G~~--p~~~Y~sti~V~~~~~~g~~~T~v~~s~~~d~P~g~~ 181 (209)
|++ .+..|.+++++.|.++++ |++-|...++...++.
T Consensus 89 Gd~l~~~~~~~~~~~~~~~~~g~---~v~k~t~~Ye~~~~~~ 127 (151)
T PF00407_consen 89 GDVLGDYKSFKSTIQKIPKGDGG---CVVKWTIEYEKKGEDV 127 (151)
T ss_dssp ETTGTTTEEEEEEEEEEEETTSC---EEEEEEEEEEESSTSC
T ss_pred ccccccEEEEEEEEEecCCCCCc---eEEEEEEEEEecCCCC
Confidence 996 344556666666655443 7888888887554444
No 3
>cd07821 PYR_PYL_RCAR_like Pyrabactin resistance 1 (PYR1), PYR1-like (PYL), regulatory component of abscisic acid receptors (RCARs), and related proteins. The PYR/PYL/RCAR-like family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. PYR/PYL/RCAR plant proteins are receptors involved in signal transduction. They bind abscisic acid (ABA) and mediate its signaling. ABA is a vital plant hormone, which regulates plant growth, development, and response to environmental stresses. Upon binding ABA, these plant proteins interact with a type 2C protein phosphatase (PP2C), such as ABI1 and ABI2, and inhibit their activity. When ABA is bound, a loop (designated the gate/CL2 loop) closes over the ligand binding pocket, resulting in the weakening of the inactive PYL dimer and facilitating type 2C protein phosphatase binding. In the ABA:PYL1:ABI1 complex, the gate
Probab=99.72 E-value=6e-16 Score=118.21 Aligned_cols=135 Identities=30% Similarity=0.426 Sum_probs=115.7
Q ss_pred eEEEecChHHHHHHhhcCCCCCccccccceeEEccCCCCCcceEEEEEeecCCCcceeeEeeceecCCCCEEEEEEeecc
Q 046151 64 AQRIRAPNDVVWSIVRRFDQPQTYKHFIKSCSVSDNFTMAVGSTRDVNVISGLPAATSTERLDILDDDRQVTGFSIIGGE 143 (209)
Q Consensus 64 ~~~I~APa~~VW~vVrdF~~~~~w~p~V~s~e~~eGd~g~vGsvR~lt~~~G~p~~~~~ErLd~lDd~~~~~sY~iieG~ 143 (209)
+.+|+||+++||+++.|+.+.+.|.|.++++++.++.+ ++|++|.+.+..| ..+++++..+|+.++.+.|++.+|+
T Consensus 6 ~~~i~a~~~~V~~~l~d~~~~~~w~~~~~~~~~~~~~~-~~g~~~~~~~~~g---~~~~~~i~~~~~~~~~i~~~~~~~~ 81 (140)
T cd07821 6 SVTIDAPADKVWALLSDFGGLHKWHPAVASCELEGGGP-GVGAVRTVTLKDG---GTVRERLLALDDAERRYSYRIVEGP 81 (140)
T ss_pred EEEECCCHHHHHHHHhCcCchhhhccCcceEEeecCCC-CCCeEEEEEeCCC---CEEEEEehhcCccCCEEEEEecCCC
Confidence 46899999999999999999999999999999987653 6899999999765 5788999999999889999999887
Q ss_pred cCccceEEEEEEEeecCCCCceEEEEEEeeecCCCCCCHHHHHHHHHHHHHHHHHHHHHHHh
Q 046151 144 HRLRNYRSVTSVHGFNRDGAICTVVLESYVVDVPEGNTEEDTRLFADTVVKLNLQKLVSVAE 205 (209)
Q Consensus 144 ~p~~~Y~sti~V~~~~~~g~~~T~v~~s~~~d~P~g~~~e~a~~~i~~v~k~gL~~Lk~~~E 205 (209)
.++.++..+.++.+.+++ +|.+.+...++++.+.-......++...+..+|++|++.+|
T Consensus 82 ~~~~~~~~~~~~~~~~~~---~t~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~~~~ 140 (140)
T cd07821 82 LPVKNYVATIRVTPEGDG---GTRVTWTAEFDPPEGLTDELARAFLTGVYRAGLAALKAALE 140 (140)
T ss_pred CCcccceEEEEEEECCCC---ccEEEEEEEEecCCCcchHHHHHHHHHHHHHHHHHHHHhhC
Confidence 888889999999986533 37888888888665444566788999999999999999875
No 4
>PF10604 Polyketide_cyc2: Polyketide cyclase / dehydrase and lipid transport; InterPro: IPR019587 This family contains polyketide cylcases/dehydrases which are enzymes involved in polyketide synthesis. It also includes other proteins of the START superfamily []. ; PDB: 3QRZ_C 3CNW_A 3P9V_A 3OQU_B 3NEF_B 3JRQ_B 3KAY_A 3JRS_A 3KDJ_A 3NMN_C ....
Probab=99.65 E-value=3.2e-14 Score=108.72 Aligned_cols=135 Identities=19% Similarity=0.205 Sum_probs=109.2
Q ss_pred eeEEeEEEecChHHHHHHhhcCCCCCccccccceeEEccCCCCCcceEEEEEeecCCCcceeeEeeceecCCCCEEEEEE
Q 046151 60 SSLLAQRIRAPNDVVWSIVRRFDQPQTYKHFIKSCSVSDNFTMAVGSTRDVNVISGLPAATSTERLDILDDDRQVTGFSI 139 (209)
Q Consensus 60 ~~~v~~~I~APa~~VW~vVrdF~~~~~w~p~V~s~e~~eGd~g~vGsvR~lt~~~G~p~~~~~ErLd~lDd~~~~~sY~i 139 (209)
.-+.++.|+||+++||.++.||.+.+.|.|.+.+|++.+++ +.|..+.+... |. ..+++++..+|++++.+.|++
T Consensus 3 ~~~~~~~v~a~~e~V~~~l~d~~~~~~w~~~~~~~~~~~~~--~~~~~~~~~~~-g~--~~~~~~i~~~~~~~~~~~~~~ 77 (139)
T PF10604_consen 3 KVEVSIEVPAPPEAVWDLLSDPENWPRWWPGVKSVELLSGG--GPGTERTVRVA-GR--GTVREEITEYDPEPRRITWRF 77 (139)
T ss_dssp EEEEEEEESS-HHHHHHHHTTTTGGGGTSTTEEEEEEEEEC--STEEEEEEEEC-SC--SEEEEEEEEEETTTTEEEEEE
T ss_pred EEEEEEEECCCHHHHHHHHhChhhhhhhhhceEEEEEcccc--ccceeEEEEec-cc--cceeEEEEEecCCCcEEEEEE
Confidence 34556789999999999999999999999999999998633 45666777753 32 478999999998899999999
Q ss_pred eecccCccceEEEEEEEeecCCCCceEEEEEEeeecC-CCCCC-HHHHHHHHHHHHHHHHHHHHHHHh
Q 046151 140 IGGEHRLRNYRSVTSVHGFNRDGAICTVVLESYVVDV-PEGNT-EEDTRLFADTVVKLNLQKLVSVAE 205 (209)
Q Consensus 140 ieG~~p~~~Y~sti~V~~~~~~g~~~T~v~~s~~~d~-P~g~~-~e~a~~~i~~v~k~gL~~Lk~~~E 205 (209)
. ..++.++..+.++.|.+ +| |.+.|...+++ +.+.- ...++..+...++..|++||+.+|
T Consensus 78 ~--~~~~~~~~~~~~~~~~~-~g---t~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~E 139 (139)
T PF10604_consen 78 V--PSGFTNGTGRWRFEPVG-DG---TRVTWTVEFEPGLPGWLAGPLLRPAVKRIVREALENLKRAAE 139 (139)
T ss_dssp E--SSSSCEEEEEEEEEEET-TT---EEEEEEEEEEESCTTSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred E--ecceeEEEEEEEEEEcC-CC---EEEEEEEEEEEeccchhhHHHHHHHHHHHHHHHHHHHhcccC
Confidence 6 56788899999999875 33 77888887774 33443 456789999999999999999987
No 5
>cd08866 SRPBCC_11 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.56 E-value=1.9e-13 Score=106.64 Aligned_cols=136 Identities=15% Similarity=0.178 Sum_probs=102.4
Q ss_pred eEEEecChHHHHHHhhcCCCCCccccccceeEEccCCCCCc-----ceEEEEEeecCCCcceeeEeeceecCCCCEEEEE
Q 046151 64 AQRIRAPNDVVWSIVRRFDQPQTYKHFIKSCSVSDNFTMAV-----GSTRDVNVISGLPAATSTERLDILDDDRQVTGFS 138 (209)
Q Consensus 64 ~~~I~APa~~VW~vVrdF~~~~~w~p~V~s~e~~eGd~g~v-----GsvR~lt~~~G~p~~~~~ErLd~lDd~~~~~sY~ 138 (209)
+..|+||+++||+++.||++.+.|.|.+++|+++++.+++. |..+.+... .+ +.++.++...|+.++.++|+
T Consensus 4 ~~~i~a~~~~Vw~~l~D~~~~~~w~p~v~~~~~l~~~~~~~~~~~~~~~~~~~~~--~~-~~v~~~~~~~~~~~~~i~~~ 80 (144)
T cd08866 4 RVRVPAPPETVWAVLTDYDNLAEFIPNLAESRLLERNGNRVVLEQTGKQGILFFK--FE-ARVVLELREREEFPRELDFE 80 (144)
T ss_pred EEEECCCHHHHHHHHhChhhHHhhCcCceEEEEEEcCCCEEEEEEeeeEEEEeee--ee-EEEEEEEEEecCCCceEEEE
Confidence 46799999999999999999999999999999886542111 112222111 11 34566777778778999999
Q ss_pred EeecccCccceEEEEEEEeecCCCCceEEEEEEeeecCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhh
Q 046151 139 IIGGEHRLRNYRSVTSVHGFNRDGAICTVVLESYVVDVPEGNTEEDTRLFADTVVKLNLQKLVSVAES 206 (209)
Q Consensus 139 iieG~~p~~~Y~sti~V~~~~~~g~~~T~v~~s~~~d~P~g~~~e~a~~~i~~v~k~gL~~Lk~~~E~ 206 (209)
+++|+ +..|..+.++.|.++++ +|.+.+...+++..+--...+..++...+...|++|++.+|+
T Consensus 81 ~~~g~--~~~~~g~w~~~~~~~~~--~t~v~~~~~~~~~~~~p~~l~~~~~~~~~~~~l~~lr~~ae~ 144 (144)
T cd08866 81 MVEGD--FKRFEGSWRLEPLADGG--GTLLTYEVEVKPDFFAPVFLVEFVLRQDLPTNLLAIRAEAES 144 (144)
T ss_pred EcCCc--hhceEEEEEEEECCCCC--eEEEEEEEEEEeCCCCCHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 99885 67889999999876423 488888888875444445667889999999999999999985
No 6
>cd08865 SRPBCC_10 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.45 E-value=7.2e-12 Score=95.33 Aligned_cols=135 Identities=11% Similarity=0.023 Sum_probs=100.0
Q ss_pred eEEEecChHHHHHHhhcCCCCCccccccceeEEccCCCCCcceEEEEEeecCCCcceeeEeeceecCCCCEEEEEEeecc
Q 046151 64 AQRIRAPNDVVWSIVRRFDQPQTYKHFIKSCSVSDNFTMAVGSTRDVNVISGLPAATSTERLDILDDDRQVTGFSIIGGE 143 (209)
Q Consensus 64 ~~~I~APa~~VW~vVrdF~~~~~w~p~V~s~e~~eGd~g~vGsvR~lt~~~G~p~~~~~ErLd~lDd~~~~~sY~iieG~ 143 (209)
++.|+||+++||+++.||.+.+.|.|.+.+++..++...++|+...+.+..++..-.+++++..+|+ ++.+.|...+|+
T Consensus 4 ~~~i~ap~~~Vw~~l~d~~~~~~w~~~~~~~~~~~~~~~~~g~~~~~~~~~~g~~~~~~~~v~~~~p-~~~~~~~~~~~~ 82 (140)
T cd08865 4 SIVIERPVEEVFAYLADFENAPEWDPGVVEVEKITDGPVGVGTRYHQVRKFLGRRIELTYEITEYEP-GRRVVFRGSSGP 82 (140)
T ss_pred EEEEcCCHHHHHHHHHCccchhhhccCceEEEEcCCCCCcCccEEEEEEEecCceEEEEEEEEEecC-CcEEEEEecCCC
Confidence 4689999999999999999999999999999987654457899988876533211256889998885 578999987664
Q ss_pred cCccceEEEEEEEeecCCCCceEEEEEEeeecCCCC--CCHHHHHHHHHHHHHHHHHHHHHHHhh
Q 046151 144 HRLRNYRSVTSVHGFNRDGAICTVVLESYVVDVPEG--NTEEDTRLFADTVVKLNLQKLVSVAES 206 (209)
Q Consensus 144 ~p~~~Y~sti~V~~~~~~g~~~T~v~~s~~~d~P~g--~~~e~a~~~i~~v~k~gL~~Lk~~~E~ 206 (209)
+ .+..+..+.+.+ + +|.+.+...++.+.. .-.......+...++..|++||+.+|.
T Consensus 83 ~---~~~~~~~~~~~~-~---~t~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lk~~~e~ 140 (140)
T cd08865 83 F---PYEDTYTFEPVG-G---GTRVRYTAELEPGGFARLLDPLMAPAFRRRARAALENLKALLEA 140 (140)
T ss_pred c---ceEEEEEEEEcC-C---ceEEEEEEEEccchhHHHHHHHHHHHHhhhhHHHHHHHHHHhhC
Confidence 3 367778888753 2 377777766664211 112335667778889999999999884
No 7
>cd08861 OtcD1_ARO-CYC_like N-terminal and C-terminal aromatase/cyclase domains of Streptomyces rimosus OtcD1 and related domains. This family includes the N- and C- terminal aromatase/cyclase (ARO/CYC) domains of Streptomyces rimosus OtcD1 and related domains. It belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. ARO/CYC domains participate in the diversification of aromatic polyketides by promoting polyketide cyclization. They occur in two architectural forms, didomain and monodomain. Didomain aromatase/cyclases (ARO/CYCs), contain two ARO/CYC domains, and are associated with C7-C12 first ring cyclized polyketides. Streptomyces rimosus OtcD1 is a didomain ARO/CYC. The polyketide Oxytetracycline (OTC) is a broad spectrum antibiotic made by Streptomyces rimosus. The gene encoding OtcD1 is part of oxytetracycline (OTC) gene cluster. Disruption of this
Probab=99.36 E-value=2.4e-11 Score=94.49 Aligned_cols=136 Identities=13% Similarity=0.020 Sum_probs=98.5
Q ss_pred eEEEecChHHHHHHhhcCCCCCccccccceeEEccCCCCCcceEEEEEee-cCCCcceeeEeeceecCCCCEEEEEEeec
Q 046151 64 AQRIRAPNDVVWSIVRRFDQPQTYKHFIKSCSVSDNFTMAVGSTRDVNVI-SGLPAATSTERLDILDDDRQVTGFSIIGG 142 (209)
Q Consensus 64 ~~~I~APa~~VW~vVrdF~~~~~w~p~V~s~e~~eGd~g~vGsvR~lt~~-~G~p~~~~~ErLd~lDd~~~~~sY~iieG 142 (209)
+.+|+||+++||+++.||.+.+.|+|. .+++...++ ++...+|.+... .|. ....+.+..+|++.+.+.|..+++
T Consensus 4 s~~i~ap~~~V~~~l~D~~~~p~~~p~-~~~~~~~~~-~~~~~~~~~~~~~~g~--~~~~~~~~~~~~~~~~i~~~~~~~ 79 (142)
T cd08861 4 SVTVAAPAEDVYDLLADAERWPEFLPT-VHVERLELD-GGVERLRMWATAFDGS--VHTWTSRRVLDPEGRRIVFRQEEP 79 (142)
T ss_pred EEEEcCCHHHHHHHHHhHHhhhccCCC-ceEEEEEEc-CCEEEEEEEEEcCCCc--EEEEEEEEEEcCCCCEEEEEEeeC
Confidence 357999999999999999998889998 555544432 122245655554 232 222345556888899999999886
Q ss_pred ccCccceEEEEEEEeecCCCCceEEEEEEeeecCC--CCCCHHHHHHHHHHHHHHHHHHHHHHHhh
Q 046151 143 EHRLRNYRSVTSVHGFNRDGAICTVVLESYVVDVP--EGNTEEDTRLFADTVVKLNLQKLVSVAES 206 (209)
Q Consensus 143 ~~p~~~Y~sti~V~~~~~~g~~~T~v~~s~~~d~P--~g~~~e~a~~~i~~v~k~gL~~Lk~~~E~ 206 (209)
+.++..+....++.|.+++ +|.|.+...++++ .+..+..+..++...+..+|++||+.+|.
T Consensus 80 ~~~~~~~~g~w~~~~~~~~---~t~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lk~~~E~ 142 (142)
T cd08861 80 PPPVASMSGEWRFEPLGGG---GTRVTLRHDFTLGIDSPEAVPWIRRALDRNSRAELAALRAAAER 142 (142)
T ss_pred CCChhhheeEEEEEECCCC---cEEEEEEEEEEECCCCchhHHHHHHHHccccHHHHHHHHHHhhC
Confidence 6678889988899986533 3777777776643 23455666888999999999999999984
No 8
>cd08862 SRPBCC_Smu440-like Ligand-binding SRPBCC domain of Streptococcus mutans Smu.440 and related proteins. This family includes the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of Streptococcus mutans Smu.440 and related proteins. This domain belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Streptococcus mutans is a dental pathogen, and the leading cause of dental caries. In this pathogen, the gene encoding Smu.440 is in the same operon as the gene encoding SMU.441, a member of the MarR protein family of transcriptional regulators involved in multiple antibiotic resistance. It has been suggested that SMU.440 is involved in polyketide-like antibiotic resistance.
Probab=99.35 E-value=7.3e-11 Score=90.57 Aligned_cols=132 Identities=14% Similarity=0.040 Sum_probs=97.4
Q ss_pred eEEEecChHHHHHHhhcCCCCCccccccceeEEccCCCCCcceEEEEEeecCCCcceeeEeeceecCCCCEEEEEEeecc
Q 046151 64 AQRIRAPNDVVWSIVRRFDQPQTYKHFIKSCSVSDNFTMAVGSTRDVNVISGLPAATSTERLDILDDDRQVTGFSIIGGE 143 (209)
Q Consensus 64 ~~~I~APa~~VW~vVrdF~~~~~w~p~V~s~e~~eGd~g~vGsvR~lt~~~G~p~~~~~ErLd~lDd~~~~~sY~iieG~ 143 (209)
++.|+||+++||+++.||.+.+.|.|.+.+|++.++.+ ++|+...++...+ ..+..++..+++.+ .|+|+...
T Consensus 6 ~~~i~Ap~~~Vw~~~~d~~~~~~w~~~~~~~~~~~~~~-~~G~~~~~~~~~~---~~~~~~i~~~~p~~-~~~~~~~~-- 78 (138)
T cd08862 6 TIVIDAPPERVWAVLTDVENWPAWTPSVETVRLEGPPP-AVGSSFKMKPPGL---VRSTFTVTELRPGH-SFTWTGPA-- 78 (138)
T ss_pred EEEEcCCHHHHHHHHHhhhhcccccCcceEEEEecCCC-CCCcEEEEecCCC---CceEEEEEEecCCC-EEEEEecC--
Confidence 46899999999999999999999999999999986532 6787766765432 35778888888654 57777543
Q ss_pred cCccceEEEEEEEeecCCCCceEEEEEEeeecCCCC-CCHHHHHHHHHHHHHHHHHHHHHHHhh
Q 046151 144 HRLRNYRSVTSVHGFNRDGAICTVVLESYVVDVPEG-NTEEDTRLFADTVVKLNLQKLVSVAES 206 (209)
Q Consensus 144 ~p~~~Y~sti~V~~~~~~g~~~T~v~~s~~~d~P~g-~~~e~a~~~i~~v~k~gL~~Lk~~~E~ 206 (209)
+...+..+.++.+.+++ +|.+.+.+.+..|.+ .........+...++..|++||+.+|.
T Consensus 79 -~~~~~~~~~~~~~~~~~---~t~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lk~~~E~ 138 (138)
T cd08862 79 -PGISAVHRHEFEAKPDG---GVRVTTSESLSGPLAFLFGLFVGKKLRALLPEWLEGLKAAAEQ 138 (138)
T ss_pred -CCEEEEEEEEEEEcCCC---cEEEEEEEEeecchHHHHHHHHHHHHHhhHHHHHHHHHHHhcC
Confidence 23455667777775422 376777777764432 224456788999999999999999884
No 9
>cd07819 SRPBCC_2 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.30 E-value=2.6e-10 Score=87.51 Aligned_cols=132 Identities=14% Similarity=0.041 Sum_probs=86.8
Q ss_pred eEEEecChHHHHHHhhcCCCCCccccccceeEEccCCCCCcceEEEEEeecCCCcceeeEeeceec-CCCCEEEEEEeec
Q 046151 64 AQRIRAPNDVVWSIVRRFDQPQTYKHFIKSCSVSDNFTMAVGSTRDVNVISGLPAATSTERLDILD-DDRQVTGFSIIGG 142 (209)
Q Consensus 64 ~~~I~APa~~VW~vVrdF~~~~~w~p~V~s~e~~eGd~g~vGsvR~lt~~~G~p~~~~~ErLd~lD-d~~~~~sY~iieG 142 (209)
+..|+||+++||+++.|+.+.+.|.|.+.+|++.++.+++.+....+.+..+ ....+-+..++ +..+.++|+..+|
T Consensus 7 s~~i~ap~e~V~~~l~D~~~~~~w~p~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~i~~~~~~~ 83 (140)
T cd07819 7 EFEIEAPPAAVMDVLADVEAYPEWSPKVKSVEVLLRDNDGRPEMVRIGVGAY---GIKDTYALEYTWDGAGSVSWTLVEG 83 (140)
T ss_pred EEEEeCCHHHHHHHHhChhhhhhhCcceEEEEEeccCCCCCEEEEEEEEeee---eEEEEEEEEEEEcCCCcEEEEEecc
Confidence 3579999999999999999999999999999996543233333444554322 11112222222 2267799999887
Q ss_pred ccCccceEEEEEEEeecCCCCceEEEEEEeeecCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 046151 143 EHRLRNYRSVTSVHGFNRDGAICTVVLESYVVDVPEGNTEEDTRLFADTVVKLNLQKLVSV 203 (209)
Q Consensus 143 ~~p~~~Y~sti~V~~~~~~g~~~T~v~~s~~~d~P~g~~~e~a~~~i~~v~k~gL~~Lk~~ 203 (209)
. +...+.....+.|.++ +|.+.+...+++.-+.-.-....+...+...-+++|++.
T Consensus 84 ~-~~~~~~~~~~~~~~~~----~t~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 139 (140)
T cd07819 84 E-GNRSQEGSYTLTPKGD----GTRVTFDLTVELTVPLPGFLKRKAEPLVLDEALKGLKKR 139 (140)
T ss_pred c-ceeEEEEEEEEEECCC----CEEEEEEEEEEecCCCCHHHHHHhhhHHHHHHHHhHhhh
Confidence 5 5777888888887643 377877777653222223334566666677777777764
No 10
>cd07822 SRPBCC_4 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.23 E-value=7.8e-10 Score=84.34 Aligned_cols=135 Identities=13% Similarity=0.060 Sum_probs=90.5
Q ss_pred eEEEecChHHHHHHhhcCCCCCccccccceeEEccCCCCCcceEEEEEeecCC-CcceeeEeeceecCCCCEEEEEEeec
Q 046151 64 AQRIRAPNDVVWSIVRRFDQPQTYKHFIKSCSVSDNFTMAVGSTRDVNVISGL-PAATSTERLDILDDDRQVTGFSIIGG 142 (209)
Q Consensus 64 ~~~I~APa~~VW~vVrdF~~~~~w~p~V~s~e~~eGd~g~vGsvR~lt~~~G~-p~~~~~ErLd~lDd~~~~~sY~iieG 142 (209)
+++|+||+++||+++.|+.+.+.|.+.+..++... ..+|+...+.+..++ ......+++..+|+. +.+.|+...+
T Consensus 5 ~~~i~ap~~~Vw~~~~d~~~~~~w~~~~~~~~~~~---~~~G~~~~~~~~~~~~~~~~~~~~v~~~~p~-~~~~~~~~~~ 80 (141)
T cd07822 5 EIEINAPPEKVWEVLTDFPSYPEWNPFVRSATGLS---LALGARLRFVVKLPGGPPRSFKPRVTEVEPP-RRLAWRGGLP 80 (141)
T ss_pred EEEecCCHHHHHHHHhccccccccChhheeEeccc---cCCCCEEEEEEeCCCCCcEEEEEEEEEEcCC-CEeEEEecCC
Confidence 46799999999999999999999999887776542 257887777765431 224678889999985 5788998776
Q ss_pred ccCccceEEEEEEEeecCCCCceEEEEEEeeecCCCC-CCHHHHHHHHHHHHHHHHHHHHHHHh
Q 046151 143 EHRLRNYRSVTSVHGFNRDGAICTVVLESYVVDVPEG-NTEEDTRLFADTVVKLNLQKLVSVAE 205 (209)
Q Consensus 143 ~~p~~~Y~sti~V~~~~~~g~~~T~v~~s~~~d~P~g-~~~e~a~~~i~~v~k~gL~~Lk~~~E 205 (209)
+.....+..+..+.+..++ +|.+.+.+.+.-+.. .........+...++..|+.||+.+|
T Consensus 81 ~~~~~~~~~~~~~~~~~~~---~T~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~L~~~~E 141 (141)
T cd07822 81 FPGLLDGEHSFELEPLGDG---GTRFVHRETFSGLLAPLVLLGLGRDLRAGFEAMNEALKARAE 141 (141)
T ss_pred CCcEeeEEEEEEEEEcCCC---cEEEEEeeEEEEEEhHHhhhhhHHHHhHhHHHHHHHHHHhhC
Confidence 5543345566677774333 366655555432211 11222345666667777777877765
No 11
>cd07818 SRPBCC_1 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.20 E-value=1.4e-09 Score=85.44 Aligned_cols=138 Identities=12% Similarity=-0.015 Sum_probs=95.9
Q ss_pred EEeEEEecChHHHHHHhhcCCCCCccccccceeEE---c-cCCCCCcceEEEEEeecCCCcceeeEeeceecCCCCEEEE
Q 046151 62 LLAQRIRAPNDVVWSIVRRFDQPQTYKHFIKSCSV---S-DNFTMAVGSTRDVNVISGLPAATSTERLDILDDDRQVTGF 137 (209)
Q Consensus 62 ~v~~~I~APa~~VW~vVrdF~~~~~w~p~V~s~e~---~-eGd~g~vGsvR~lt~~~G~p~~~~~ErLd~lDd~~~~~sY 137 (209)
..++.|+||+++||.++.|+.+.+.|.|.+..+.. . .+...++|+...++...+ .+....++..+++ ++.+.|
T Consensus 5 ~~s~~I~ap~e~V~~~i~D~~~~~~W~p~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~--~~~~~~~v~~~~p-~~~i~~ 81 (150)
T cd07818 5 ERSIVINAPPEEVFPYVNDLKNWPEWSPWEKLDPDMKRTYSGPDSGVGASYSWEGNDK--VGEGEMEITESVP-NERIEY 81 (150)
T ss_pred EEEEEEeCCHHHHHHHHhCcccCcccCchhhcCcceEEEecCCCCCCCeEEEEecCCc--ccceEEEEEecCC-CcEEEE
Confidence 34568999999999999999999999997765432 1 122346888877765442 1244566777765 567999
Q ss_pred EEeecccCccceEEEEEEEeecCCCCceEEEEEEeeecCCCCC----CHHHHHHHHHHHHHHHHHHHHHHHhh
Q 046151 138 SIIGGEHRLRNYRSVTSVHGFNRDGAICTVVLESYVVDVPEGN----TEEDTRLFADTVVKLNLQKLVSVAES 206 (209)
Q Consensus 138 ~iieG~~p~~~Y~sti~V~~~~~~g~~~T~v~~s~~~d~P~g~----~~e~a~~~i~~v~k~gL~~Lk~~~E~ 206 (209)
++..++.....+..+..+.+. ++ +|.+.+.+.++.|-+- ........+...+..+|++||+.+|+
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~-~~---gT~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lk~~~E~ 150 (150)
T cd07818 82 ELRFIKPFEATNDVEFTLEPV-GG---GTKVTWGMSGELPFPLKLMYLFLDMDKMIGKDFEKGLANLKAVLEK 150 (150)
T ss_pred EEEecCCccccceEEEEEEEc-CC---ceEEEEEEEecCCchHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhC
Confidence 987532211356778888876 23 3888888888755332 22344677788889999999999986
No 12
>cd07817 SRPBCC_8 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.19 E-value=9.4e-10 Score=84.48 Aligned_cols=130 Identities=12% Similarity=0.133 Sum_probs=90.1
Q ss_pred eEEEecChHHHHHHhhcCCCCCccccccceeEEccCCCCCcceEEEEEeecCCCcceeeEeeceecCCCCEEEEEEeecc
Q 046151 64 AQRIRAPNDVVWSIVRRFDQPQTYKHFIKSCSVSDNFTMAVGSTRDVNVISGLPAATSTERLDILDDDRQVTGFSIIGGE 143 (209)
Q Consensus 64 ~~~I~APa~~VW~vVrdF~~~~~w~p~V~s~e~~eGd~g~vGsvR~lt~~~G~p~~~~~ErLd~lDd~~~~~sY~iieG~ 143 (209)
+++|+||+++||+++.|+.+.+.|.|.+.++++.++. +....+.+..|... ..+.+...+++ ++.+.|....|.
T Consensus 5 ~i~I~ap~e~V~~~~~D~~~~~~w~~~~~~~~~~~~~----~~~~~~~~~~g~~~-~~~~~v~~~~~-~~~i~~~~~~~~ 78 (139)
T cd07817 5 SITVNVPVEEVYDFWRDFENLPRFMSHVESVEQLDDT----RSHWKAKGPAGLSV-EWDAEITEQVP-NERIAWRSVEGA 78 (139)
T ss_pred EEEeCCCHHHHHHHHhChhhhHHHhhhhcEEEEcCCC----ceEEEEecCCCCcE-EEEEEEeccCC-CCEEEEEECCCC
Confidence 3579999999999999999999999999999987541 22233333224322 34455555555 445899887664
Q ss_pred cCccceEEEEEEEeecCCCCceEEEEEEeeecCCCCCCH----HHHHHHHHHHHHHHHHHHHHHHh
Q 046151 144 HRLRNYRSVTSVHGFNRDGAICTVVLESYVVDVPEGNTE----EDTRLFADTVVKLNLQKLVSVAE 205 (209)
Q Consensus 144 ~p~~~Y~sti~V~~~~~~g~~~T~v~~s~~~d~P~g~~~----e~a~~~i~~v~k~gL~~Lk~~~E 205 (209)
+ .+..+.++.+..+ + +|.+.....++++.+... .....++...++.+|++||+.+|
T Consensus 79 ~---~~~~~~~f~~~~~-~--~T~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lk~~aE 138 (139)
T cd07817 79 D---PNAGSVRFRPAPG-R--GTRVTLTIEYEPPGGAEGAAVAGLLGGEPERQLREDLRRFKQLVE 138 (139)
T ss_pred C---CcceEEEEEECCC-C--CeEEEEEEEEECCcchhhhhHHHHhhhhHHHHHHHHHHHHHHHhh
Confidence 3 4567778887543 2 377777777775543322 33467788889999999999998
No 13
>cd07813 COQ10p_like Coenzyme Q-binding protein COQ10p and similar proteins. Coenzyme Q-binding protein COQ10p and similar proteins. COQ10p is a hydrophobic protein located in the inner membrane of mitochondria that binds coenzyme Q (CoQ), also called ubiquinone, which is an essential electron carrier of the respiratory chain. Deletion of the gene encoding COQ10p (COQ10 or YOL008W) in Saccharomyces cerevisiae results in respiratory defect because of the inability to oxidize NADH and succinate. COQ10p may function in the delivery of CoQ (Q6 in budding yeast) to its proper location for electron transport. The human homolog, called Q-binding protein COQ10 homolog A (COQ10A), is able to fully complement for the absence of COQ10p in fission yeast. Human COQ10A also has a splice variant COQ10B. COQ10p belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and the
Probab=99.18 E-value=5.7e-10 Score=86.98 Aligned_cols=133 Identities=11% Similarity=0.092 Sum_probs=97.8
Q ss_pred EEEecChHHHHHHhhcCCCCCccccccceeEEccCCCCCcceEEEEEeecCCCcceeeEeeceecCCCCEEEEEEeeccc
Q 046151 65 QRIRAPNDVVWSIVRRFDQPQTYKHFIKSCSVSDNFTMAVGSTRDVNVISGLPAATSTERLDILDDDRQVTGFSIIGGEH 144 (209)
Q Consensus 65 ~~I~APa~~VW~vVrdF~~~~~w~p~V~s~e~~eGd~g~vGsvR~lt~~~G~p~~~~~ErLd~lDd~~~~~sY~iieG~~ 144 (209)
..|+||+++||+++.|+.+.+.|.|.+.+|++.++. +.+....+++.-++-......++. +++ +++++++.++|
T Consensus 5 ~~i~ap~~~v~~~i~D~~~~~~~~p~~~~~~vl~~~--~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~i~~~~~~g-- 78 (138)
T cd07813 5 RLVPYSAEQMFDLVADVERYPEFLPWCTASRVLERD--EDELEAELTVGFGGIRESFTSRVT-LVP-PESIEAELVDG-- 78 (138)
T ss_pred EEcCCCHHHHHHHHHHHHhhhhhcCCccccEEEEcC--CCEEEEEEEEeeccccEEEEEEEE-ecC-CCEEEEEecCC--
Confidence 579999999999999999999999999999998765 234444455543321123344444 565 66889998888
Q ss_pred CccceEEEEEEEeecCCCCceEEEEEEeeecCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhh
Q 046151 145 RLRNYRSVTSVHGFNRDGAICTVVLESYVVDVPEGNTEEDTRLFADTVVKLNLQKLVSVAES 206 (209)
Q Consensus 145 p~~~Y~sti~V~~~~~~g~~~T~v~~s~~~d~P~g~~~e~a~~~i~~v~k~gL~~Lk~~~E~ 206 (209)
+++.+....++.|.+++ +|.+.....++++-+--...+..++....+..|+++++.+++
T Consensus 79 ~~~~~~g~w~~~p~~~~---~T~v~~~~~~~~~~~l~~~l~~~~~~~~~~~~l~~f~~~~~~ 137 (138)
T cd07813 79 PFKHLEGEWRFKPLGEN---ACKVEFDLEFEFKSRLLEALAGLVFDEVAKKMVDAFEKRAKQ 137 (138)
T ss_pred ChhhceeEEEEEECCCC---CEEEEEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 46778888899987643 378888888875422223445788888899999999998875
No 14
>cd07812 SRPBCC START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC (SRPBCC) ligand-binding domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket; they bind diverse ligands. Included in this superfamily are the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, and the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), as well as the SRPBCC domains of phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of this superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.18 E-value=3.1e-09 Score=78.02 Aligned_cols=134 Identities=16% Similarity=0.052 Sum_probs=96.2
Q ss_pred EeEEEecChHHHHHHhhcCCCCCccccccceeEEccCCCCCcceEEEEEeecCCCcceeeEeeceecCCCCEEEEEEeec
Q 046151 63 LAQRIRAPNDVVWSIVRRFDQPQTYKHFIKSCSVSDNFTMAVGSTRDVNVISGLPAATSTERLDILDDDRQVTGFSIIGG 142 (209)
Q Consensus 63 v~~~I~APa~~VW~vVrdF~~~~~w~p~V~s~e~~eGd~g~vGsvR~lt~~~G~p~~~~~ErLd~lDd~~~~~sY~iieG 142 (209)
....|+||+++||+++.|+.+...|.|.+.++++.++.....|....+.+..+. ......++..+++ +..++|++..+
T Consensus 3 ~~~~i~a~~~~v~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~~~~~-~~~~~~~~~~~ 80 (141)
T cd07812 3 ASIEIPAPPEAVWDLLSDPERWPEWSPGLERVEVLGGGEGGVGARFVGGRKGGR-RLTLTSEVTEVDP-PRPGRFRVTGG 80 (141)
T ss_pred EEEEeCCCHHHHHHHHhChhhhhhhCcccceEEEcCCCCccceeEEEEEecCCc-cccceEEEEEecC-CCceEEEEecC
Confidence 346799999999999999999999999999999987655567777777664121 1356788888887 66889999877
Q ss_pred ccCccceEEEEEEEeecCCCCceEEEEEEeeecCCCCC---CHHHHHHHHHHHHHHHHHHHHH
Q 046151 143 EHRLRNYRSVTSVHGFNRDGAICTVVLESYVVDVPEGN---TEEDTRLFADTVVKLNLQKLVS 202 (209)
Q Consensus 143 ~~p~~~Y~sti~V~~~~~~g~~~T~v~~s~~~d~P~g~---~~e~a~~~i~~v~k~gL~~Lk~ 202 (209)
+.+ ..+..+..+.+..+ .+|.+.+...++.+... .......++...+...|++|++
T Consensus 81 ~~~-~~~~~~~~~~~~~~---~~t~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (141)
T cd07812 81 GGG-VDGTGEWRLEPEGD---GGTRVTYTVEYDPPGPLLKVFALLLAGALKRELAALLRALKA 139 (141)
T ss_pred CCC-cceeEEEEEEECCC---CcEEEEEEEEEecCCcchhhhhHHHHHHHHhHHHHHHHHHHh
Confidence 664 56677778887543 13778888888765543 2344455555555666666654
No 15
>cd07814 SRPBCC_CalC_Aha1-like Putative hydrophobic ligand-binding SRPBCC domain of Micromonospora echinospora CalC, human Aha1, and related proteins. This family includes the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of Micromonospora echinospora CalC, human Aha1, and related proteins. Proteins in this group belong to the SRPBCC domain superfamily of proteins, which bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. MeCalC confers resistance to the enediyne, calicheamicin gamma 1 (CLM), by a self sacrificing mechanism which results in inactivation of both CalC and the highly reactive diradical enediyne species. MeCalC can also inactivate two other enediynes, shishijimicin and namenamicin. A crucial Gly of the MeCalC CLM resistance mechanism is not conserved in this subgroup. This family also includes the C-terminal, Bet v1-like domain of Aha1, one of several co-chaperones, which regulate the dimeric chaperone Hsp90. Aha1 promotes dimer
Probab=99.09 E-value=3.5e-09 Score=81.08 Aligned_cols=135 Identities=10% Similarity=-0.007 Sum_probs=89.6
Q ss_pred EeEEEecChHHHHHHhhcCCCCCccccccceeEEccCCCCCcceEEEEEeecCCCcceeeEeeceecCCCCEEEEEEeec
Q 046151 63 LAQRIRAPNDVVWSIVRRFDQPQTYKHFIKSCSVSDNFTMAVGSTRDVNVISGLPAATSTERLDILDDDRQVTGFSIIGG 142 (209)
Q Consensus 63 v~~~I~APa~~VW~vVrdF~~~~~w~p~V~s~e~~eGd~g~vGsvR~lt~~~G~p~~~~~ErLd~lDd~~~~~sY~iieG 142 (209)
.+.+|+||+++||+++.|+.+.+.|.|.+..+.+... .-|+.+......++-...++.++..+|+. +.+.|+...+
T Consensus 4 ~s~~I~a~~~~Vw~~l~d~~~~~~w~~~~~~~~~~~~---~Gg~~~~~~~~~~g~~~~~~~~i~~~~~~-~~i~~~~~~~ 79 (139)
T cd07814 4 IEREFDAPPELVWRALTDPELLAQWFGPTTTAEMDLR---VGGRWFFFMTGPDGEEGWVSGEVLEVEPP-RRLVFTWAFS 79 (139)
T ss_pred EEEEecCCHHHHHHHcCCHHHHHhhhCcCCceEEccc---CCceEEEEEECCCCCEEeccEEEEEEcCC-CeEEEEeccc
Confidence 3468999999999999999998899876333333211 11666655433221123578899999966 6799998876
Q ss_pred cc-CccceEEEEEEEeecCCCCceEEEEEEeeecCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhh
Q 046151 143 EH-RLRNYRSVTSVHGFNRDGAICTVVLESYVVDVPEGNTEEDTRLFADTVVKLNLQKLVSVAES 206 (209)
Q Consensus 143 ~~-p~~~Y~sti~V~~~~~~g~~~T~v~~s~~~d~P~g~~~e~a~~~i~~v~k~gL~~Lk~~~E~ 206 (209)
+. +...+.....+.+.+ + +|.+.+...+..+.+. .......+...+..-|++||+.+|+
T Consensus 80 ~~~~~~~~~~~~~~~~~~-~---~T~v~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~lk~~~E~ 139 (139)
T cd07814 80 DETPGPETTVTVTLEETG-G---GTRLTLTHSGFPEEDA-EQEAREGMEEGWTGTLDRLKALLEK 139 (139)
T ss_pred CCCCCCceEEEEEEEECC-C---CEEEEEEEEccChHhH-HHHHHhCHhhHHHHHHHHHHHHhhC
Confidence 53 344556666777754 3 3777776665443222 3344556666788889999999985
No 16
>cd08860 TcmN_ARO-CYC_like N-terminal aromatase/cyclase domain of the multifunctional protein tetracenomycin (TcmN) and related domains. This family includes the N-terminal aromatase/cyclase (ARO/CYC) domain of Streptomyces glaucescens TcmN, and related domains. It belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. ARO/CYC domains participate in the diversification of aromatic polyketides by promoting polyketide cyclization. They occur in two architectural forms, monodomain and didomain. Monodomain aromatase/cyclases have a single ARO/CYC domain. For some, such as TcmN, this single domain is linked to a second domain of unrelated function. TcmN is a multifunctional cyclase-dehydratase-O-methyl transferase. Its N-terminal ARO/CYC domain participates in polyketide binding and catalysis; it promotes C9-C14 first-ring (and C7-C16 second-ring) cyclizations.
Probab=99.08 E-value=5.3e-09 Score=84.43 Aligned_cols=138 Identities=12% Similarity=0.041 Sum_probs=93.3
Q ss_pred EeEEEecChHHHHHHhhcCCCCCccccccceeEEccCCCCCcceEEEEEe-ecCCCcceeeEeeceecCCCCEEEEE-Ee
Q 046151 63 LAQRIRAPNDVVWSIVRRFDQPQTYKHFIKSCSVSDNFTMAVGSTRDVNV-ISGLPAATSTERLDILDDDRQVTGFS-II 140 (209)
Q Consensus 63 v~~~I~APa~~VW~vVrdF~~~~~w~p~V~s~e~~eGd~g~vGsvR~lt~-~~G~p~~~~~ErLd~lDd~~~~~sY~-ii 140 (209)
.+++|+|||++||.+|.|+.+-+.|.|.++++++.+.++.+.|+--.+.. ..|.+..+..|+. +|...+.+.++ ..
T Consensus 5 ~si~i~a~~~~v~~lvaDv~~~P~~~~~~~~~~~l~~~~~~~~~r~~i~~~~~g~~~~w~s~~~--~~~~~~~i~~~~~~ 82 (146)
T cd08860 5 NSIVIDAPLDLVWDMTNDIATWPDLFSEYAEAEVLEEDGDTVRFRLTMHPDANGTVWSWVSERT--LDPVNRTVRARRVE 82 (146)
T ss_pred eEEEEcCCHHHHHHHHHhhhhhhhhccceEEEEEEEecCCeEEEEEEEEeccCCEEEEEEEEEE--ecCCCcEEEEEEec
Confidence 34689999999999999999999999999999998654334553221222 2333223333433 68888888885 22
Q ss_pred ecccCccceEEEEEEEeecCCCCceEEEEEEeeecCCC--CCCHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 046151 141 GGEHRLRNYRSVTSVHGFNRDGAICTVVLESYVVDVPE--GNTEEDTRLFADTVVKLNLQKLVSVAESQV 208 (209)
Q Consensus 141 eG~~p~~~Y~sti~V~~~~~~g~~~T~v~~s~~~d~P~--g~~~e~a~~~i~~v~k~gL~~Lk~~~E~~~ 208 (209)
. .|+..-...-++.|.+ +| |.|.....+..+. +....-..++++..+...|++||+.+|+.|
T Consensus 83 ~--~p~~~m~~~W~f~~~~-~g---T~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lk~~aE~~~ 146 (146)
T cd08860 83 T--GPFAYMNIRWEYTEVP-EG---TRMRWVQDFEMKPGAPVDDAAMTDRLNTNTRAQMARIKKKIEAAA 146 (146)
T ss_pred C--CCcceeeeeEEEEECC-CC---EEEEEEEEEEECCCCccchHHHHHHHhcccHHHHHHHHHHhhhcC
Confidence 3 3555555555778763 33 6665555554332 333445678899999999999999999854
No 17
>cd07825 SRPBCC_7 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=98.98 E-value=1.8e-08 Score=78.44 Aligned_cols=138 Identities=17% Similarity=0.186 Sum_probs=85.1
Q ss_pred EeEEEecChHHHHHHhhcCCCCCccccccceeEEccCC-CCCcceEEEEEeec-CCCcceeeEeeceecCCCCEEEEEEe
Q 046151 63 LAQRIRAPNDVVWSIVRRFDQPQTYKHFIKSCSVSDNF-TMAVGSTRDVNVIS-GLPAATSTERLDILDDDRQVTGFSII 140 (209)
Q Consensus 63 v~~~I~APa~~VW~vVrdF~~~~~w~p~V~s~e~~eGd-~g~vGsvR~lt~~~-G~p~~~~~ErLd~lDd~~~~~sY~ii 140 (209)
++++|+||+++||+++.||...+.|.|....+....++ +..+|+...+.... |++ ..+..++..+++.. .+.|+..
T Consensus 4 ~~~~i~ap~e~Vw~~l~d~~~~~~W~~~~~~~~~~~~~~~~~~G~~~~~~~~~~g~~-~~~~~~v~~~~p~~-~l~~~~~ 81 (144)
T cd07825 4 VSRTVDAPAEAVFAVLADPRRHPEIDGSGTVREAIDGPRILAVGDVFRMAMRLDGGP-YRITNHVVAFEENR-LIAWRPG 81 (144)
T ss_pred EEEEEeCCHHHHHHHHhCccccceeCCCCccccccCCCccCCCCCEEEEEEEcCCCc-eEEEEEEEEECCCC-EEEEEcc
Confidence 45689999999999999999998998743222222222 34789888777654 333 34566777777755 4888864
Q ss_pred ecccCccceEEEEEEEeecCCCCceEEEEEEeeecCCCCCCH-HHHHHHHHHHHHHHHHHHHHHHh
Q 046151 141 GGEHRLRNYRSVTSVHGFNRDGAICTVVLESYVVDVPEGNTE-EDTRLFADTVVKLNLQKLVSVAE 205 (209)
Q Consensus 141 eG~~p~~~Y~sti~V~~~~~~g~~~T~v~~s~~~d~P~g~~~-e~a~~~i~~v~k~gL~~Lk~~~E 205 (209)
-...+...-..+.++.+..+ + +|.+.....+..+..-.. .........-++..|++|++.+|
T Consensus 82 ~~~~~~~~~~~~~~l~~~~~-g--~T~vt~~~~~~g~~~~~~~~~~~~~~~~g~~~~l~~L~~~~~ 144 (144)
T cd07825 82 PAGQEPGGHRWRWELEPIGP-G--RTRVTETYDWSAVTDLKELLGFPAFPEVQLEASLDRLATLAE 144 (144)
T ss_pred CCCCCCCceeEEEEEEECCC-C--cEEEEEEEeccCChhhhhccccCCCCHHHHHHHHHHHHHHhC
Confidence 22222333344566776543 2 366766565543322100 11223356668899999999886
No 18
>cd07824 SRPBCC_6 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=98.87 E-value=1.4e-07 Score=74.60 Aligned_cols=130 Identities=15% Similarity=0.104 Sum_probs=81.3
Q ss_pred EEEecChHHHHHHhhcCCCCCccccccceeEEcc-CCCCCcceEEEEEeecCCCcc-eeeEeeceecCCCCEEEEEEeec
Q 046151 65 QRIRAPNDVVWSIVRRFDQPQTYKHFIKSCSVSD-NFTMAVGSTRDVNVISGLPAA-TSTERLDILDDDRQVTGFSIIGG 142 (209)
Q Consensus 65 ~~I~APa~~VW~vVrdF~~~~~w~p~V~s~e~~e-Gd~g~vGsvR~lt~~~G~p~~-~~~ErLd~lDd~~~~~sY~iieG 142 (209)
.+|+||+++||+++.|+...+.|.|.+.++++.+ +.+.++|+.-+.......|.. .++-++..+| ..+.+.|+. .|
T Consensus 7 ~~i~ap~e~Vw~~~tD~~~~~~w~~~v~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~v~~~~-p~~~~~~~~-~g 84 (146)
T cd07824 7 WRIPAPPEAVWDVLVDAESWPDWWPGVERVVELEPGDEAGIGARRRYTWRGLLPYRLRFELRVTRIE-PLSLLEVRA-SG 84 (146)
T ss_pred EEecCCHHHHHHHHhChhhcchhhhceEEEEEccCCCCCCcceEEEEEEEecCCcEEEEEEEEEeec-CCcEEEEEE-EE
Confidence 5799999999999999999999999999999886 333477777555433222321 3344445544 466788885 56
Q ss_pred ccCccceEEEEEEEeecCCCCceEEEEEEeeecCCC-------CCCHHHHHHHHHHHHHHHHHHHHHH
Q 046151 143 EHRLRNYRSVTSVHGFNRDGAICTVVLESYVVDVPE-------GNTEEDTRLFADTVVKLNLQKLVSV 203 (209)
Q Consensus 143 ~~p~~~Y~sti~V~~~~~~g~~~T~v~~s~~~d~P~-------g~~~e~a~~~i~~v~k~gL~~Lk~~ 203 (209)
++. ...+.++.+.+ + +|.+.....++.+- +.-..........++...+++||+.
T Consensus 85 ~~~---~~~~~~~~~~~-~---gt~vt~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~L~~~ 145 (146)
T cd07824 85 DLE---GVGRWTLAPDG-S---GTVVRYDWEVRTTKPWMNLLAPLARPVFRWNHRRVMRAGEKGLARR 145 (146)
T ss_pred eee---EEEEEEEEEcC-C---CEEEEEEEEEEcCHHHHHhhhHhhhhHHHHhHHHHHHhHHHHHHhh
Confidence 532 35666788742 2 36676666665432 1122223444555555556666553
No 19
>PF03364 Polyketide_cyc: Polyketide cyclase / dehydrase and lipid transport; InterPro: IPR005031 Members of this family of enzymes from Streptomyces spp. are involved in polyketide (linear poly-beta-ketones) synthesis.; PDB: 1T17_A 3GGN_B 2KCZ_A 2D4R_B 2REZ_A 2RES_A 3TVQ_A 2RER_A 2KF2_A 3TL1_A ....
Probab=98.72 E-value=2e-07 Score=71.42 Aligned_cols=129 Identities=20% Similarity=0.246 Sum_probs=84.4
Q ss_pred EecChHHHHHHhhcCCCCCccccccceeEEccCCCCCcceEEEEEeecCCCcceeeEeeceecCCCCEEEEEEeecccCc
Q 046151 67 IRAPNDVVWSIVRRFDQPQTYKHFIKSCSVSDNFTMAVGSTRDVNVISGLPAATSTERLDILDDDRQVTGFSIIGGEHRL 146 (209)
Q Consensus 67 I~APa~~VW~vVrdF~~~~~w~p~V~s~e~~eGd~g~vGsvR~lt~~~G~p~~~~~ErLd~lDd~~~~~sY~iieG~~p~ 146 (209)
|+||+++||+++.|+.+.+.|.|.+++|++.+.+++ +..-.+.+..++.......+........ +.+..++|+ +
T Consensus 1 V~ap~~~V~~~i~D~e~~~~~~p~~~~v~vl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~g~--~ 74 (130)
T PF03364_consen 1 VNAPPEEVWSVITDYENYPRFFPPVKEVRVLERDGD--GMRARWEVKFGGIKRSWTSRVTEDPPER--IRFEQISGP--F 74 (130)
T ss_dssp ESS-HHHHHHHHTTGGGHHHHCTTEEEEEEEEEECC--EEEEEEEECTTTTCEEEEEEEEEECTTT--EEEESSETT--E
T ss_pred CCCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCC--eEEEEEEEecCCEEEEEEEEEEEEEeee--eeeeecCCC--c
Confidence 789999999999999999999999999999876522 2222334433322123445554444444 778877774 6
Q ss_pred cceEEEEEEEeecC-CCCceEEEEEEeeecCCCCCCHHHHHHHHHHHHHHHHHHHH
Q 046151 147 RNYRSVTSVHGFNR-DGAICTVVLESYVVDVPEGNTEEDTRLFADTVVKLNLQKLV 201 (209)
Q Consensus 147 ~~Y~sti~V~~~~~-~g~~~T~v~~s~~~d~P~g~~~e~a~~~i~~v~k~gL~~Lk 201 (209)
+.+...-++.+..+ +|+..|.+.-.+.++++-+--..-+..++....+..|++|+
T Consensus 75 ~~~~g~W~~~~~~~~~~g~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (130)
T PF03364_consen 75 KSFEGSWRFEPLGGNEGGTRTRVTYDYEVDPPGPLPGFLARQFFRRDLRQMLEAFR 130 (130)
T ss_dssp EEEEEEEEEEEETTECCEEEEEEEEEEEEETSSSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhcEEEEEEEECCCCcCCCEEEEEEEEEEecCcHhHHHHHHHHHHHHHHHHHHhhC
Confidence 88888889998763 11223555555555544444455567788888888877764
No 20
>cd05018 CoxG Carbon monoxide dehydrogenase subunit G (CoxG). CoxG has been shown, in Oligotropha carboxidovorans, to anchor the carbon monoxide (CO) dehydrogenase to the cytoplasmic membrane. The gene encoding CoxG is part of the Cox cluster (coxBCMSLDEFGHIK) located on a low-copy-number, circular, megaplasmid pHCG3. This cluster includes genes encoding subunits of CO dehydrogenase and several accessory components involved in the utilization of CO. This family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=98.71 E-value=4e-07 Score=70.05 Aligned_cols=130 Identities=18% Similarity=0.102 Sum_probs=83.6
Q ss_pred eEEEecChHHHHHHhhcCCCCCccccccceeEEccCCCCCcceEEEEEeecCCCcc-ee--eEeeceecCCCCEEEEEEe
Q 046151 64 AQRIRAPNDVVWSIVRRFDQPQTYKHFIKSCSVSDNFTMAVGSTRDVNVISGLPAA-TS--TERLDILDDDRQVTGFSII 140 (209)
Q Consensus 64 ~~~I~APa~~VW~vVrdF~~~~~w~p~V~s~e~~eGd~g~vGsvR~lt~~~G~p~~-~~--~ErLd~lDd~~~~~sY~ii 140 (209)
+..|+||+++||+++.|+.+...|.|.+.+++..+++ .......+.+ | |.+ .. +-++..+|+. +.+.++..
T Consensus 6 ~~~i~a~~e~v~~~l~D~~~~~~w~p~~~~~~~~~~~--~~~~~~~~~~--~-~~~~~~~~~~~~~~~~~~-~~~~~~~~ 79 (144)
T cd05018 6 EFRIPAPPEEVWAALNDPEVLARCIPGCESLEKIGPN--EYEATVKLKV--G-PVKGTFKGKVELSDLDPP-ESYTITGE 79 (144)
T ss_pred EEEecCCHHHHHHHhcCHHHHHhhccchhhccccCCC--eEEEEEEEEE--c-cEEEEEEEEEEEEecCCC-cEEEEEEE
Confidence 3679999999999999999999999999999887542 2222222222 2 221 22 3444444544 56777765
Q ss_pred e-cccCccceEEEEEEEeecCCCCceEEEEEEeeecCCCCC----CHHHHHHHHHHHHHHHHHHHHHHH
Q 046151 141 G-GEHRLRNYRSVTSVHGFNRDGAICTVVLESYVVDVPEGN----TEEDTRLFADTVVKLNLQKLVSVA 204 (209)
Q Consensus 141 e-G~~p~~~Y~sti~V~~~~~~g~~~T~v~~s~~~d~P~g~----~~e~a~~~i~~v~k~gL~~Lk~~~ 204 (209)
. +......+..+.++.+. ++ +|.+.+...++.+ +. -......++..++..=+++||+.+
T Consensus 80 ~~~~~~~~~~~~~~~l~~~-~~---gT~v~~~~~~~~~-g~l~~l~~~~~~~~~~~~~~~~~~~l~~~~ 143 (144)
T cd05018 80 GKGGAGFVKGTARVTLEPD-GG---GTRLTYTADAQVG-GKLAQLGSRLIDGAARKLINQFFENLASKI 143 (144)
T ss_pred EcCCCceEEEEEEEEEEec-CC---cEEEEEEEEEEEc-cChhhhCHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4 22335578888888875 33 3778887777733 32 233345666777777777787765
No 21
>cd07820 SRPBCC_3 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=98.58 E-value=3.4e-06 Score=65.99 Aligned_cols=108 Identities=15% Similarity=0.119 Sum_probs=77.8
Q ss_pred eEEEecChHHHHHHhhcCCCCCccccccceeEEccCCCC--CcceEEEEEeecCC-CcceeeEeeceecCCCCEEEEEEe
Q 046151 64 AQRIRAPNDVVWSIVRRFDQPQTYKHFIKSCSVSDNFTM--AVGSTRDVNVISGL-PAATSTERLDILDDDRQVTGFSII 140 (209)
Q Consensus 64 ~~~I~APa~~VW~vVrdF~~~~~w~p~V~s~e~~eGd~g--~vGsvR~lt~~~G~-p~~~~~ErLd~lDd~~~~~sY~ii 140 (209)
+++|+||+++||+.+.|+.+++.|.|.+.++++.+..++ .+|+.-.+.+..++ +. ..+-++..+++ ++.+.+..+
T Consensus 4 s~~I~ap~e~V~~~~~d~~~~~~~~p~~~~v~~~~~~~~~~~~G~~~~~~~~~~~~~~-~w~~~it~~~p-~~~f~~~~~ 81 (137)
T cd07820 4 STVIPAPIEEVFDFHSRPDNLERLTPPWLEFAVLGRTPGLIYGGARVTYRLRHFGIPQ-RWTTEITEVEP-PRRFVDEQV 81 (137)
T ss_pred EEEcCCCHHHHHHHHcCcchHHhcCCCCCCeEEEecCCCcccCCcEEEEEEEecCCce-EEEEEEEEEcC-CCeEEEEec
Confidence 467999999999999999999999999999999743222 45777777775442 22 33455555664 456888877
Q ss_pred ecccCccceEEEEEEEeecCCCCceEEEEEEeeecCCCC
Q 046151 141 GGEHRLRNYRSVTSVHGFNRDGAICTVVLESYVVDVPEG 179 (209)
Q Consensus 141 eG~~p~~~Y~sti~V~~~~~~g~~~T~v~~s~~~d~P~g 179 (209)
.|+ +..+.-+..+.+.+ + +|.+.....++.|-+
T Consensus 82 ~G~--~~~w~h~~~f~~~~-~---gT~vt~~v~~~~p~g 114 (137)
T cd07820 82 SGP--FRSWRHTHRFEAIG-G---GTLMTDRVEYRLPLG 114 (137)
T ss_pred cCC--chhCEEEEEEEECC-C---ceEEEEEEEEeCCch
Confidence 774 55677777888753 2 488888888887643
No 22
>cd07823 SRPBCC_5 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=98.34 E-value=2e-05 Score=62.24 Aligned_cols=134 Identities=15% Similarity=0.096 Sum_probs=81.7
Q ss_pred eEEEecChHHHHHHhhcCCCCCccccccceeEEccCCCCCcceEEEEEeecCCCcc-eee--EeeceecCCCCEEEEEEe
Q 046151 64 AQRIRAPNDVVWSIVRRFDQPQTYKHFIKSCSVSDNFTMAVGSTRDVNVISGLPAA-TST--ERLDILDDDRQVTGFSII 140 (209)
Q Consensus 64 ~~~I~APa~~VW~vVrdF~~~~~w~p~V~s~e~~eGd~g~vGsvR~lt~~~G~p~~-~~~--ErLd~lDd~~~~~sY~ii 140 (209)
+.+|+||+++||.++.|+.....|.|.+++.+..+++ . ..-.++++-| |.. ..+ =++..++...+++.+..-
T Consensus 4 ~~~v~a~pe~vw~~l~D~~~~~~~~pg~~~~~~~~~~--~--~~~~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (146)
T cd07823 4 EFTVPAPPDRVWALLLDIERVAPCLPGASLTEVEGDD--E--YKGTVKVKLG-PISASFKGTARLLEDDEAARRAVLEAT 78 (146)
T ss_pred eEEecCCHHHHHHHhcCHHHHHhcCCCceeccccCCC--e--EEEEEEEEEc-cEEEEEEEEEEEEeccCCCcEEEEEEE
Confidence 3579999999999999999999999999888876432 2 2222333222 211 221 145555557888888765
Q ss_pred ecccC--cc-ceEEEEEEEeecCCCCceEEEEEEeeecC--C-CCCCHHHHHHHHHHHHHHHHHHHHHHHhh
Q 046151 141 GGEHR--LR-NYRSVTSVHGFNRDGAICTVVLESYVVDV--P-EGNTEEDTRLFADTVVKLNLQKLVSVAES 206 (209)
Q Consensus 141 eG~~p--~~-~Y~sti~V~~~~~~g~~~T~v~~s~~~d~--P-~g~~~e~a~~~i~~v~k~gL~~Lk~~~E~ 206 (209)
+.+.. .. ....++++.| .++ +|.+.|...++. | ..--........+.++..=+++|++.+|.
T Consensus 79 g~~~~~~g~~~~~~~~~l~~--~~~--gT~v~~~~~~~~~g~l~~l~~~~v~~~~~~~~~~~~~~l~~~~e~ 146 (146)
T cd07823 79 GKDARGQGTAEATVTLRLSP--AGG--GTRVTVDTDLALTGKLAQFGRGGIGDVAGRLLAQFAANLEARLAA 146 (146)
T ss_pred EecCCCcceEEEEEEEEEEe--cCC--cEEEEEEEEEEEeeEhHHhChhHHHHHHHHHHHHHHHHHHHHhcC
Confidence 42111 11 2344556665 232 477877776542 1 12233445667777777788888888774
No 23
>PRK10724 hypothetical protein; Provisional
Probab=98.22 E-value=3.1e-05 Score=63.61 Aligned_cols=134 Identities=10% Similarity=0.036 Sum_probs=86.6
Q ss_pred eEEEecChHHHHHHhhcCCCCCccccccceeEEccCCCCCcceEEEEEeecCCCcceeeEeeceecCCCCEEEEEEeecc
Q 046151 64 AQRIRAPNDVVWSIVRRFDQPQTYKHFIKSCSVSDNFTMAVGSTRDVNVISGLPAATSTERLDILDDDRQVTGFSIIGGE 143 (209)
Q Consensus 64 ~~~I~APa~~VW~vVrdF~~~~~w~p~V~s~e~~eGd~g~vGsvR~lt~~~G~p~~~~~ErLd~lDd~~~~~sY~iieG~ 143 (209)
+..|++|+++||++|.|..+.+.|.|.++++++.+-.++ +-+..+++.-++-..+.+.|... ++ ++++.+..++|
T Consensus 20 ~~~v~~s~~~v~~lv~Dve~yp~flp~~~~s~vl~~~~~--~~~a~l~v~~~g~~~~f~srv~~-~~-~~~I~~~~~~G- 94 (158)
T PRK10724 20 TALVPYSAEQMYQLVNDVQSYPQFLPGCTGSRVLESTPG--QMTAAVDVSKAGISKTFTTRNQL-TS-NQSILMQLVDG- 94 (158)
T ss_pred EEEecCCHHHHHHHHHHHHHHHHhCcccCeEEEEEecCC--EEEEEEEEeeCCccEEEEEEEEe-cC-CCEEEEEecCC-
Confidence 367999999999999999998899999999999865322 23444554333222334444443 43 34799999998
Q ss_pred cCccceEEEEEEEeecCCCCceEEEEEEeeecCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhh
Q 046151 144 HRLRNYRSVTSVHGFNRDGAICTVVLESYVVDVPEGNTEEDTRLFADTVVKLNLQKLVSVAES 206 (209)
Q Consensus 144 ~p~~~Y~sti~V~~~~~~g~~~T~v~~s~~~d~P~g~~~e~a~~~i~~v~k~gL~~Lk~~~E~ 206 (209)
|++.+...=+++|.++++ |.|.-...|+.+-.--+..+..+.+.+.+.=+++..+.+++
T Consensus 95 -pF~~l~g~W~f~p~~~~~---t~V~~~l~fef~s~l~~~~~~~~~~~~~~~mv~AF~~Ra~~ 153 (158)
T PRK10724 95 -PFKKLIGGWKFTPLSQEA---CRIEFHLDFEFTNKLIELAFGRVFKELASNMVQAFTVRAKE 153 (158)
T ss_pred -ChhhccceEEEEECCCCC---EEEEEEEEEEEchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 477788777899876433 66766666654333323334455555555555555555544
No 24
>cd08899 SRPBCC_CalC_Aha1-like_6 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=98.18 E-value=4.8e-05 Score=61.29 Aligned_cols=127 Identities=12% Similarity=0.009 Sum_probs=80.0
Q ss_pred eEEeEEEecChHHHHHHhhcCCCCCccccccceeEEccCCCCCcceEEEEEeecCCCcceeeEeeceecCCCCEEEEEEe
Q 046151 61 SLLAQRIRAPNDVVWSIVRRFDQPQTYKHFIKSCSVSDNFTMAVGSTRDVNVISGLPAATSTERLDILDDDRQVTGFSII 140 (209)
Q Consensus 61 ~~v~~~I~APa~~VW~vVrdF~~~~~w~p~V~s~e~~eGd~g~vGsvR~lt~~~G~p~~~~~ErLd~lDd~~~~~sY~ii 140 (209)
-.+.++|+||+++||+++.|+...+.|.+.. . .+ -.+|...++.+....+ ....-++..+|+. +.+.|+..
T Consensus 13 i~~~~~i~Ap~e~Vw~altdp~~~~~W~~~~---~---~~-~~~G~~~~~~~~~~~~-~~~~~~v~e~~p~-~~l~~~~~ 83 (157)
T cd08899 13 LRFERLLPAPIEDVWAALTDPERLARWFAPG---T---GD-LRVGGRVEFVMDDEEG-PNATGTILACEPP-RLLAFTWG 83 (157)
T ss_pred EEEEEecCCCHHHHHHHHcCHHHHHhhcCCC---C---CC-cccCceEEEEecCCCC-CccceEEEEEcCC-cEEEEEec
Confidence 4566789999999999999999988898722 1 21 2566666666543111 2456777777776 46778876
Q ss_pred ecccCccceEEEEEEEeecCCCCceEEEEEEeeecCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 046151 141 GGEHRLRNYRSVTSVHGFNRDGAICTVVLESYVVDVPEGNTEEDTRLFADTVVKLNLQKLVSVAESQV 208 (209)
Q Consensus 141 eG~~p~~~Y~sti~V~~~~~~g~~~T~v~~s~~~d~P~g~~~e~a~~~i~~v~k~gL~~Lk~~~E~~~ 208 (209)
.++ .....++++.+.+ + +|.+.-...+. + +. .....+..-....|++||+.+|+..
T Consensus 84 ~~~---~~~~~~~~l~~~~-~---gT~v~~~~~~~-~-~~---~~~~~~~~GW~~~L~~Lk~~~e~~~ 139 (157)
T cd08899 84 EGG---GESEVRFELAPEG-D---GTRLTLTHRLL-D-ER---FGAGAVGAGWHLCLDVLEAALEGGP 139 (157)
T ss_pred CCC---CCceEEEEEEEcC-C---CEEEEEEEecc-C-ch---hhhhhhcccHHHHHHHHHHHHcCCC
Confidence 544 2233455666532 2 25443333321 1 21 2445566668888999999999854
No 25
>cd08893 SRPBCC_CalC_Aha1-like_GntR-HTH Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins; some contain an N-terminal GntR family winged HTH DNA-binding domain. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. Some proteins in this subgroup contain an N-terminal winged helix-turn-helix DNA-binding domain found in the GntR family of proteins which include bacterial transcriptional regulators and their putative homologs from eukaryota and archaea.
Probab=98.11 E-value=0.00017 Score=55.04 Aligned_cols=129 Identities=14% Similarity=0.011 Sum_probs=72.2
Q ss_pred EeEEEecChHHHHHHhhcCCCCCccccccceeEEccCCCCCcceEEEEEeecCCCcceeeEeeceecCCCCEEEEEEeec
Q 046151 63 LAQRIRAPNDVVWSIVRRFDQPQTYKHFIKSCSVSDNFTMAVGSTRDVNVISGLPAATSTERLDILDDDRQVTGFSIIGG 142 (209)
Q Consensus 63 v~~~I~APa~~VW~vVrdF~~~~~w~p~V~s~e~~eGd~g~vGsvR~lt~~~G~p~~~~~ErLd~lDd~~~~~sY~iieG 142 (209)
+++.|+||+++||+++-|+...+.|.+.. .. .++ -.+|..=.+....... ..+.=++..++ .++.+.|+...+
T Consensus 4 ~~~~i~ap~e~Vw~~~td~~~~~~W~~~~---~~-~~~-~~~G~~~~~~~~~~~~-~~~~~~v~~~~-~~~~l~~~~~~~ 76 (136)
T cd08893 4 YVTYIRATPEKVWQALTDPEFTRQYWGGT---TV-ESD-WKVGSAFEYRRGDDGT-VDVEGEVLESD-PPRRLVHTWRAV 76 (136)
T ss_pred EEEEecCCHHHHHHHHcCchhhhheeccc---cc-ccC-CcCCCeEEEEeCCCcc-cccceEEEEec-CCCeEEEEEecC
Confidence 45789999999999999999988886542 12 222 2455433344332101 12344566666 455566776532
Q ss_pred cc----CccceEEEEEEEeecCCCCceEEEEEEeeecCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhh
Q 046151 143 EH----RLRNYRSVTSVHGFNRDGAICTVVLESYVVDVPEGNTEEDTRLFADTVVKLNLQKLVSVAES 206 (209)
Q Consensus 143 ~~----p~~~Y~sti~V~~~~~~g~~~T~v~~s~~~d~P~g~~~e~a~~~i~~v~k~gL~~Lk~~~E~ 206 (209)
.. +.....-++.+.+.+ + +|.+.-.... .+++. .....+...+...|++||+.+|+
T Consensus 77 ~~~~~~~~~~~~v~~~l~~~~--~--~t~l~~~~~~-~~~~~---~~~~~~~~gw~~~l~~Lk~~~e~ 136 (136)
T cd08893 77 WDPEMAAEPPSRVTFEIEPVG--D--VVKLTVTHDG-FPPGS---PTLEGVSGGWPAILSSLKTLLET 136 (136)
T ss_pred CCcccCCCCCEEEEEEEEecC--C--cEEEEEEecC-CCCch---hHHHhhhcCHHHHHHHHHHHhcC
Confidence 22 222344455666542 2 2544333332 22221 23445555677789999999884
No 26
>cd08898 SRPBCC_CalC_Aha1-like_5 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=98.07 E-value=0.00014 Score=56.19 Aligned_cols=132 Identities=11% Similarity=0.004 Sum_probs=72.4
Q ss_pred eEEEecChHHHHHHhhcCCCCCccccccceeEEccCCCCCcceEEEEEeecCCCcceeeEeeceecCCCCEEEEEEeecc
Q 046151 64 AQRIRAPNDVVWSIVRRFDQPQTYKHFIKSCSVSDNFTMAVGSTRDVNVISGLPAATSTERLDILDDDRQVTGFSIIGGE 143 (209)
Q Consensus 64 ~~~I~APa~~VW~vVrdF~~~~~w~p~V~s~e~~eGd~g~vGsvR~lt~~~G~p~~~~~ErLd~lDd~~~~~sY~iieG~ 143 (209)
+++|+||+++||+++.++...+.|.+... +.+..|. +..| .+.+.++ ......=++..+++.+ .+.|+.....
T Consensus 6 ~i~i~a~~e~Vw~~~td~~~~~~W~~~~~-~~~~~~~-~~~g---~~~~~~~-~~~~~~~~i~~~~p~~-~l~~~~~~~~ 78 (145)
T cd08898 6 TILIDAPRERVWRALTDPEHFGQWFGVKL-GPFVVGE-GATG---EITYPGY-EHGVFPVTVVEVDPPR-RFSFRWHPPA 78 (145)
T ss_pred EEEecCCHHHHHHHhcChhhhhhcccccC-CCcccCC-ccee---EEecCCC-CccceEEEEEEeCCCc-EEEEEecCCC
Confidence 36799999999999999999888887543 2222221 1122 2333222 1123344566666544 4667764322
Q ss_pred ----c---CccceEEEEEEEeecCCCCceEEEEEEeeecCCCC-CCHHHHHHHHHHHHHHHHHHHHHHHhh
Q 046151 144 ----H---RLRNYRSVTSVHGFNRDGAICTVVLESYVVDVPEG-NTEEDTRLFADTVVKLNLQKLVSVAES 206 (209)
Q Consensus 144 ----~---p~~~Y~sti~V~~~~~~g~~~T~v~~s~~~d~P~g-~~~e~a~~~i~~v~k~gL~~Lk~~~E~ 206 (209)
. .......++++.+.. + +|.+...-......+ +..+.....+..-...-|++||+.+|.
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~-~---gT~vt~~~~~~~~~~~~~~~~~~~~~~~gw~~~l~~L~~~le~ 145 (145)
T cd08898 79 IDPGEDYSAEPSTLVEFTLEPIA-G---GTLLTVTESGFDALPAERRAEAYRMNEGGWDEQLENLVAYVEA 145 (145)
T ss_pred cccccccCCCCceEEEEEEEecC-C---cEEEEEEEcCCCCCChHHHHHHHHhhhhhHHHHHHHHHHHhcC
Confidence 1 122234555666643 2 365544433211222 122234455666788889999998874
No 27
>COG3427 Carbon monoxide dehydrogenase subunit G, CoxG [Energy production and conversion]
Probab=97.82 E-value=0.00024 Score=58.26 Aligned_cols=103 Identities=18% Similarity=0.130 Sum_probs=66.3
Q ss_pred EEEecChHHHHHHhhcCCCCCccccccceeEEccCCCCCcceEEEEEeecCCCc-cee--eEeeceecCCCCEEEEEEee
Q 046151 65 QRIRAPNDVVWSIVRRFDQPQTYKHFIKSCSVSDNFTMAVGSTRDVNVISGLPA-ATS--TERLDILDDDRQVTGFSIIG 141 (209)
Q Consensus 65 ~~I~APa~~VW~vVrdF~~~~~w~p~V~s~e~~eGd~g~vGsvR~lt~~~G~p~-~~~--~ErLd~lDd~~~~~sY~iie 141 (209)
..|+||+++||+.+.|+.......|.++|++.. |+ +-=+ .+.++-| |. +++ +=++..+|+..++|+.+.-+
T Consensus 7 f~V~~p~e~Vw~~L~dpe~~a~ciPG~qs~e~~-g~--e~~~--~v~l~ig-~l~~~~~g~~~~~~v~~~~~~~~i~g~G 80 (146)
T COG3427 7 FRVAAPPEAVWEFLNDPEQVAACIPGVQSVETN-GD--EYTA--KVKLKIG-PLKGTFSGRVRFVNVDEPPRSITINGSG 80 (146)
T ss_pred EEecCCHHHHHHHhcCHHHHHhhcCCcceeeec-CC--eEEE--EEEEeec-ceeEEEEEEEEEccccCCCcEEEEEeec
Confidence 479999999999999999999999999999986 33 2111 2222222 22 233 45566677888888888765
Q ss_pred cccCccceEEEEEEEeecCCCCceEEEEEEeeecC
Q 046151 142 GEHRLRNYRSVTSVHGFNRDGAICTVVLESYVVDV 176 (209)
Q Consensus 142 G~~p~~~Y~sti~V~~~~~~g~~~T~v~~s~~~d~ 176 (209)
|-. -..-.+++.+.-.+.+. +|++-|....+.
T Consensus 81 ~~~-~g~~~~~~~v~l~~~g~--gt~v~w~~~~~~ 112 (146)
T COG3427 81 GGA-AGFADGTVDVQLEPSGE--GTRVNWFADANV 112 (146)
T ss_pred ccc-cceeeeeeEEEEEEcCC--CcEEEEEEEccc
Confidence 332 22334444443333332 388999888763
No 28
>cd08894 SRPBCC_CalC_Aha1-like_1 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=97.79 E-value=0.00069 Score=53.10 Aligned_cols=131 Identities=11% Similarity=0.057 Sum_probs=71.2
Q ss_pred EEeEEEecChHHHHHHhhcCCCCCcccc--cc--ceeEEccCCCCCcceEEEEEee--cCCCcceeeEeeceecCCCCEE
Q 046151 62 LLAQRIRAPNDVVWSIVRRFDQPQTYKH--FI--KSCSVSDNFTMAVGSTRDVNVI--SGLPAATSTERLDILDDDRQVT 135 (209)
Q Consensus 62 ~v~~~I~APa~~VW~vVrdF~~~~~w~p--~V--~s~e~~eGd~g~vGsvR~lt~~--~G~p~~~~~ErLd~lDd~~~~~ 135 (209)
.+++.|+||+++||.++-+-..++.|.. .+ ..+.+ + ..+|..-.+.+. +|.. -...=+..++++.+ .+
T Consensus 3 ~~~r~i~ap~e~Vw~a~t~p~~l~~W~~p~~~~~~~~~~---d-~~~GG~~~~~~~~~~g~~-~~~~g~v~e~~p~~-~l 76 (139)
T cd08894 3 VTTRVIDAPRDLVFAAWTDPEHLAQWWGPEGFTNTTHEF---D-LRPGGRWRFVMHGPDGTD-YPNRIVFLEIEPPE-RI 76 (139)
T ss_pred EEEEEeCCCHHHHHHHhCCHHHHhhccCcCCCcceEEEE---E-ecCCCEEEEEEECCCCCE-ecceEEEEEEcCCC-EE
Confidence 4678899999999999998777666642 11 12222 1 244544333332 2211 11233566777655 46
Q ss_pred EEEEeecccCccceEEEEEEEeecCCCCceEEEEEEeeecCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhh
Q 046151 136 GFSIIGGEHRLRNYRSVTSVHGFNRDGAICTVVLESYVVDVPEGNTEEDTRLFADTVVKLNLQKLVSVAES 206 (209)
Q Consensus 136 sY~iieG~~p~~~Y~sti~V~~~~~~g~~~T~v~~s~~~d~P~g~~~e~a~~~i~~v~k~gL~~Lk~~~E~ 206 (209)
.|+...++. ....++++.+.. + +|.+.-...+. +++.-++.+...+.......|++|++.+|+
T Consensus 77 ~~t~~~~~~---~~~v~~~~~~~~-~---gT~ltl~~~~~-~~~~~~~~~~~~~~~Gw~~~l~~L~~~l~~ 139 (139)
T cd08894 77 VYDHGSGPP---RFRLTVTFEEQG-G---KTRLTWRQVFP-TAAERCEKIKFGAVEGNEQTLDRLAAYLAR 139 (139)
T ss_pred EEEeccCCC---cEEEEEEEEECC-C---CEEEEEEEEcC-CHHHHHHHHHhCHHHHHHHHHHHHHHHHhC
Confidence 677643311 233455666542 3 25554334432 111112223455677788889999998874
No 29
>cd08876 START_1 Uncharacterized subgroup of the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domain family. Functionally uncharacterized subgroup of the START domain family. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some mammalian members of the START family (STARDs), it is known which lipids bind in this pocket; these include cholesterol (STARD1, -3, -4, and -5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2, -7, and -10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). Mammalian STARDs participate in the control of various cellular processes, including lipid trafficking between intracellular compartments, lipid metabolism, and modulation of signaling events. Mutation or altered expression of STARDs is linked to diseases such as cancer, genetic disorders, a
Probab=97.75 E-value=0.0036 Score=51.53 Aligned_cols=136 Identities=11% Similarity=0.028 Sum_probs=78.5
Q ss_pred eEEEecChHHHHHHhhcCCCCCccccccceeEEccCCCCCcceEEEEEeecCCCc---ceeeEeeceecCCCCEEEEEEe
Q 046151 64 AQRIRAPNDVVWSIVRRFDQPQTYKHFIKSCSVSDNFTMAVGSTRDVNVISGLPA---ATSTERLDILDDDRQVTGFSII 140 (209)
Q Consensus 64 ~~~I~APa~~VW~vVrdF~~~~~w~p~V~s~e~~eGd~g~vGsvR~lt~~~G~p~---~~~~ErLd~lDd~~~~~sY~ii 140 (209)
..+|++|+++||+++.|.+..+.|-|.+.++++.+..+. ---+-.+.+....|+ ..+..+--..+.++..+...+.
T Consensus 46 ~~~i~~s~e~v~~vi~d~e~~~~w~~~~~~~~vie~~~~-~~~i~~~~~~~p~pvs~Rdfv~~~~~~~~~~~~~~~i~~~ 124 (195)
T cd08876 46 VAEVDASIEAFLALLRDTESYPQWMPNCKESRVLKRTDD-NERSVYTVIDLPWPVKDRDMVLRSTTEQDADDGSVTITLE 124 (195)
T ss_pred EEEEeCCHHHHHHHHhhhHhHHHHHhhcceEEEeecCCC-CcEEEEEEEecccccCCceEEEEEEEEEcCCCCEEEEEee
Confidence 356999999999999999998899999999999875421 122333333333332 1222211122322344444444
Q ss_pred eccc--C-------ccceEEEEEEEeecCCCCceEEEEEEeeecCCCCCC-HHHHHHHHHHHHHHHHHHHHHHH
Q 046151 141 GGEH--R-------LRNYRSVTSVHGFNRDGAICTVVLESYVVDVPEGNT-EEDTRLFADTVVKLNLQKLVSVA 204 (209)
Q Consensus 141 eG~~--p-------~~~Y~sti~V~~~~~~g~~~T~v~~s~~~d~P~g~~-~e~a~~~i~~v~k~gL~~Lk~~~ 204 (209)
..+. | +..+.+...+++..++ +|.+.....+|+ .|.- .-....++...+..-|++|++.+
T Consensus 125 s~~~~~P~~~~~vR~~~~~~~~~i~~~~~~---~t~vt~~~~~dp-~g~iP~~lv~~~~~~~~~~~l~~l~~~~ 194 (195)
T cd08876 125 AAPEALPEQKGYVRIKTVEGQWTFTPLGNG---KTRVTYQAYADP-GGSIPGWLANAFAKDAPYNTLENLRKQL 194 (195)
T ss_pred cCCccCCCCCCeEEceeceeeEEEEECCCC---eEEEEEEEEeCC-CCCCCHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3322 3 4556666677776532 366655556664 3432 33334566666667777777654
No 30
>cd08900 SRPBCC_CalC_Aha1-like_7 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=97.72 E-value=0.002 Score=50.66 Aligned_cols=136 Identities=14% Similarity=0.036 Sum_probs=68.8
Q ss_pred EEeEEEecChHHHHHHhhcCCCCCcccccc--ceeEEccCCCCCcceEEEEEeec-CCCcceeeEeeceecCCCCEEEEE
Q 046151 62 LLAQRIRAPNDVVWSIVRRFDQPQTYKHFI--KSCSVSDNFTMAVGSTRDVNVIS-GLPAATSTERLDILDDDRQVTGFS 138 (209)
Q Consensus 62 ~v~~~I~APa~~VW~vVrdF~~~~~w~p~V--~s~e~~eGd~g~vGsvR~lt~~~-G~p~~~~~ErLd~lDd~~~~~sY~ 138 (209)
.+.+.|+||+++||.++-+-..++.|...- -.|.....+ -.+|..-.+.+.. ++......=+...+|+.++ +.|+
T Consensus 3 ~i~r~~~ap~e~Vw~a~tdp~~l~~W~~~~~~~~~~~~~~d-~~~Gg~~~~~~~~~~g~~~~~~g~~~~~~p~~~-l~~t 80 (143)
T cd08900 3 TLERTYPAPPERVFAAWSDPAARARWFVPSPDWTVLEDEFD-FRVGGREVSRGGPKGGPEITVEARYHDIVPDER-IVYT 80 (143)
T ss_pred EEEEEeCCCHHHHHHHhcCHHHHHhcCCCCCCCceeeeEEe-cCCCCEEEEEEECCCCCEEeeeEEEEEecCCce-EEEE
Confidence 456789999999999999877776675320 012222222 2455544444331 2211133345666766544 5555
Q ss_pred Ee--ecccCccceEEEEEEEeecCCCCceEEEEEEeeecCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhh
Q 046151 139 II--GGEHRLRNYRSVTSVHGFNRDGAICTVVLESYVVDVPEGNTEEDTRLFADTVVKLNLQKLVSVAES 206 (209)
Q Consensus 139 ii--eG~~p~~~Y~sti~V~~~~~~g~~~T~v~~s~~~d~P~g~~~e~a~~~i~~v~k~gL~~Lk~~~E~ 206 (209)
.. .++.+......++.+.+. ++ +|.+.-....-.+++ .+ ....+..-....|++|++.+|+
T Consensus 81 ~~~~~~~~~~~~s~v~~~l~~~--~~--gT~l~~~~~~~~~~~--~~-~~~~~~~GW~~~l~~L~~~l~~ 143 (143)
T cd08900 81 YTMHIGGTLLSASLATVEFAPE--GG--GTRLTLTEQGAFLDG--DD-DPAGREQGTAALLDNLAAELER 143 (143)
T ss_pred EeeccCCccccceEEEEEEEEC--CC--CEEEEEEEEEecccc--cc-hhhhHHHHHHHHHHHHHHHHhC
Confidence 42 222222222334555653 22 254433333211111 11 2234455567789999998874
No 31
>cd08896 SRPBCC_CalC_Aha1-like_3 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=97.67 E-value=0.0017 Score=51.31 Aligned_cols=134 Identities=11% Similarity=0.115 Sum_probs=66.9
Q ss_pred EEeEEEecChHHHHHHhhcCCCCCccccc----cceeEEccCCCCCcceEEEEEee-cCCCcceeeEeeceecCCCCEEE
Q 046151 62 LLAQRIRAPNDVVWSIVRRFDQPQTYKHF----IKSCSVSDNFTMAVGSTRDVNVI-SGLPAATSTERLDILDDDRQVTG 136 (209)
Q Consensus 62 ~v~~~I~APa~~VW~vVrdF~~~~~w~p~----V~s~e~~eGd~g~vGsvR~lt~~-~G~p~~~~~ErLd~lDd~~~~~s 136 (209)
.+++.|+||+++||.++-+-..+..|..- +..+.+. -.+|..=.+.+. .++..-...=+...+|+.++ +.
T Consensus 3 ~i~r~i~a~~e~Vw~a~t~pe~~~~W~~p~~~~~~~~~~d----~~~GG~~~~~~~~~~g~~~~~~g~v~~i~p~~~-l~ 77 (146)
T cd08896 3 VLSRTIDAPRELVWRAWTEPELLKQWFCPKPWTTEVAELD----LRPGGAFRTVMRGPDGEEFPNPGCFLEVVPGER-LV 77 (146)
T ss_pred EEEEEeCCCHHHHHHHcCCHHHHhccCCCCCccceEEEEE----eecCcEEEEEEECCCCCEecceEEEEEEeCCCE-EE
Confidence 35688999999999999876666666431 2222221 133433333332 12211123455777777654 44
Q ss_pred EE--EeecccCc-cce-EEEEEEEeecCCCCceEEEEEEeeecCCCCCCHHHHHHHHHHHHHHHHHHHHHHHh
Q 046151 137 FS--IIGGEHRL-RNY-RSVTSVHGFNRDGAICTVVLESYVVDVPEGNTEEDTRLFADTVVKLNLQKLVSVAE 205 (209)
Q Consensus 137 Y~--iieG~~p~-~~Y-~sti~V~~~~~~g~~~T~v~~s~~~d~P~g~~~e~a~~~i~~v~k~gL~~Lk~~~E 205 (209)
|+ +.++..+. ..+ ..++++.+.. ++ |.+.-...+ .++...++....-+..-....|++|++.+|
T Consensus 78 ~t~~~~~~~~~~~~~~~~v~~~~~~~~-~g---T~Ltl~~~~-~~~~~~~~~~~~~~~~GW~~~l~~L~~~l~ 145 (146)
T cd08896 78 FTDALTPGWRPAEKPFMTAIITFEDEG-GG---TRYTARARH-WTEADRKQHEEMGFHDGWGTAADQLAALAE 145 (146)
T ss_pred EEEeecCCcCCCCCCcEEEEEEEEecC-Cc---EEEEEEEEe-CCHHHHHHHHHcCHHHHHHHHHHHHHHHHh
Confidence 55 33321221 122 3345666532 33 544321222 111111111222345668889999999887
No 32
>cd08895 SRPBCC_CalC_Aha1-like_2 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=97.55 E-value=0.0069 Score=47.77 Aligned_cols=133 Identities=14% Similarity=0.048 Sum_probs=69.8
Q ss_pred EEeEEEecChHHHHHHhhcCCCCCccccccc-eeEEccCCCCCcceEEEEEe--ec------CCCcceeeEeeceecCCC
Q 046151 62 LLAQRIRAPNDVVWSIVRRFDQPQTYKHFIK-SCSVSDNFTMAVGSTRDVNV--IS------GLPAATSTERLDILDDDR 132 (209)
Q Consensus 62 ~v~~~I~APa~~VW~vVrdF~~~~~w~p~V~-s~e~~eGd~g~vGsvR~lt~--~~------G~p~~~~~ErLd~lDd~~ 132 (209)
++++.|+||+++||+++-|...++.|.+--. .+.....+ ..+|..-.+.+ .+ .+......=++..+++.+
T Consensus 3 ~~~r~i~ap~e~Vw~a~td~~~~~~W~~p~~~~~~~~~~d-~~~GG~~~~~~~~~~~~~g~~~g~~~~~~g~v~~v~p~~ 81 (146)
T cd08895 3 RLHRVIAAPPERVYRAFLDPDALAKWLPPDGMTGTVHEFD-AREGGGFRMSLTYFDPSVGKTTGNTDVFGGRFLELVPNE 81 (146)
T ss_pred EEEEEECCCHHHHHHHHcCHHHHhhcCCCCCeEeEEEEEe-cccCCeEEEEEEcCCccccccCCcEeeeEEEEEEEcCCC
Confidence 4678999999999999998888777753110 12222121 23444333333 22 011112333577777765
Q ss_pred CEEEEEEe--ecccCccceEEEEEEEeecCCCCceEEEEEEeeecCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhh
Q 046151 133 QVTGFSII--GGEHRLRNYRSVTSVHGFNRDGAICTVVLESYVVDVPEGNTEEDTRLFADTVVKLNLQKLVSVAES 206 (209)
Q Consensus 133 ~~~sY~ii--eG~~p~~~Y~sti~V~~~~~~g~~~T~v~~s~~~d~P~g~~~e~a~~~i~~v~k~gL~~Lk~~~E~ 206 (209)
+ +.|+.. ++..+ .....++.+.+. ++ +|.+...... .+.+ ........-...-|.+|++.+|.
T Consensus 82 ~-i~~~~~~~~~~~~-~~~~v~~~~~~~--~~--~T~lt~~~~~-~~~~----~~~~~~~~GW~~~l~~L~~~le~ 146 (146)
T cd08895 82 R-IVYTDVFDDPSLS-GEMTMTWTLSPV--SG--GTDVTIVQSG-IPDG----IPPEDCELGWQESLANLAALVEA 146 (146)
T ss_pred E-EEEEEEecCCCCC-ceEEEEEEEEec--CC--CEEEEEEEeC-CCch----hhhhHHHHHHHHHHHHHHHHhcC
Confidence 4 556642 22233 222344455543 33 3666555543 2322 12234444566778899988763
No 33
>cd08897 SRPBCC_CalC_Aha1-like_4 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=97.53 E-value=0.0018 Score=50.34 Aligned_cols=127 Identities=13% Similarity=0.156 Sum_probs=68.4
Q ss_pred EEeEEEecChHHHHHHhhcCCCCCcccccccee--EEccCCCCCcceEEEEEee--cCCCcceeeEeeceecCCCCEEEE
Q 046151 62 LLAQRIRAPNDVVWSIVRRFDQPQTYKHFIKSC--SVSDNFTMAVGSTRDVNVI--SGLPAATSTERLDILDDDRQVTGF 137 (209)
Q Consensus 62 ~v~~~I~APa~~VW~vVrdF~~~~~w~p~V~s~--e~~eGd~g~vGsvR~lt~~--~G~p~~~~~ErLd~lDd~~~~~sY 137 (209)
++++.|+||+++||.++-+-..++.|......+ .....| -.+|..-.+.+. +|.....+.=+...+++. +.+.|
T Consensus 3 ~~~~~~~ap~e~Vw~a~td~e~~~~W~~~~~~~~~~~~~~d-~~~GG~~~~~~~~~~g~~~~~~~g~~~ei~p~-~~l~~ 80 (133)
T cd08897 3 TVETTVDAPIEKVWEAWTTPEHITKWNFASDDWHCPSAEND-LRVGGKFSYRMEAKDGSMGFDFEGTYTEVEPH-KLIEY 80 (133)
T ss_pred EEEEEeCCCHHHHHHHhCCHHHHhhCCCCCCCcccceeeec-CCcCCEEEEEEEcCCCCcccccceEEEEECCC-CEEEE
Confidence 356889999999999999887878884332221 111122 256655444332 221111233445566654 45778
Q ss_pred EEeecccCccceEEEEEEEeecCCCCceEEEEEEeeecCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhh
Q 046151 138 SIIGGEHRLRNYRSVTSVHGFNRDGAICTVVLESYVVDVPEGNTEEDTRLFADTVVKLNLQKLVSVAES 206 (209)
Q Consensus 138 ~iieG~~p~~~Y~sti~V~~~~~~g~~~T~v~~s~~~d~P~g~~~e~a~~~i~~v~k~gL~~Lk~~~E~ 206 (209)
+..++ ...++++.+. ++ +|.+.-. ++. ... .....+..-....|.+||+.+|.
T Consensus 81 ~~~~~------~~v~~~l~~~--~~--gT~l~l~--~~~-~~~---~~~~~~~~GW~~~l~~L~~~le~ 133 (133)
T cd08897 81 TMEDG------REVEVEFTEE--GD--GTKVVET--FDA-ENE---NPVEMQRQGWQAILDNFKKYVES 133 (133)
T ss_pred EcCCC------CEEEEEEEEC--CC--CEEEEEE--ECC-CCC---CcHHHHHHHHHHHHHHHHHHhhC
Confidence 86432 2345566653 22 3544322 222 111 12223444568899999998873
No 34
>PF08327 AHSA1: Activator of Hsp90 ATPase homolog 1-like protein; InterPro: IPR013538 This family includes eukaryotic, prokaryotic and archaeal proteins that bear similarity to a C-terminal region of human activator of 90 kDa heat shock protein ATPase homologue 1 (AHSA1/p38, O95433 from SWISSPROT). This protein is known to interact with the middle domain of Hsp90, and stimulate its ATPase activity []. It is probably a general up regulator of Hsp90 function, particularly contributing to its efficiency in conditions of increased stress []. p38 is also known to interact with the cytoplasmic domain of the VSV G protein, and may thus be involved in protein transport []. It has also been reported as being under expressed in Down's syndrome. This region is found repeated in two members of this family (Q8XY04 from SWISSPROT and Q6MH87 from SWISSPROT). ; GO: 0006950 response to stress; PDB: 2KEW_A 2KTE_A 2IL5_A 1ZXF_A 2L65_A 2GKD_A 1XN6_A 3OTL_B 2LCG_A 3Q63_D ....
Probab=97.46 E-value=0.0015 Score=49.08 Aligned_cols=121 Identities=12% Similarity=0.058 Sum_probs=63.6
Q ss_pred ecChHHHHHHhhcCCCCCcc-ccccceeEEccCCCCCcceEEEEEeecCCCcceeeEeeceecCCCCEEEEEEeecccC-
Q 046151 68 RAPNDVVWSIVRRFDQPQTY-KHFIKSCSVSDNFTMAVGSTRDVNVISGLPAATSTERLDILDDDRQVTGFSIIGGEHR- 145 (209)
Q Consensus 68 ~APa~~VW~vVrdF~~~~~w-~p~V~s~e~~eGd~g~vGsvR~lt~~~G~p~~~~~ErLd~lDd~~~~~sY~iieG~~p- 145 (209)
+||+++||+++-+-..+..| ........+ .+|..-.+.-.+| ......=++..+++.++ +.|+.--++.+
T Consensus 1 ~ap~e~Vw~a~t~~~~~~~W~~~~~~~~~~------~~Gg~~~~~~~~g-~~~~~~~~v~~~~p~~~-i~~~~~~~~~~~ 72 (124)
T PF08327_consen 1 DAPPERVWEALTDPEGLAQWFTTSEAEMDF------RPGGSFRFMDPDG-GEFGFDGTVLEVEPPER-IVFTWRMPDDPD 72 (124)
T ss_dssp SSSHHHHHHHHHSHHHHHHHSEEEEEEEEC------STTEEEEEEETTS-EEEEEEEEEEEEETTTE-EEEEEEEETSSS
T ss_pred CcCHHHHHHHHCCHhHHhhccCCCcceeee------ecCCEEEEEecCC-CCceeeEEEEEEeCCEE-EEEEEEccCCCC
Confidence 69999999999998888899 221222222 3454333311222 11122224777777665 66775433322
Q ss_pred ccceEEEEEEEeecCCCCceEEE-EEEeeecCCCCCCHHHHHHHHHHHHHHHHHHHHHHHh
Q 046151 146 LRNYRSVTSVHGFNRDGAICTVV-LESYVVDVPEGNTEEDTRLFADTVVKLNLQKLVSVAE 205 (209)
Q Consensus 146 ~~~Y~sti~V~~~~~~g~~~T~v-~~s~~~d~P~g~~~e~a~~~i~~v~k~gL~~Lk~~~E 205 (209)
...-..++.+.+ .+++ |.+ +....++ .++.....+..-....|++|++.+|
T Consensus 73 ~~~~~v~~~~~~-~~~~---T~l~~~~~~~~-----~~~~~~~~~~~gw~~~l~~L~~~lE 124 (124)
T PF08327_consen 73 GPESRVTFEFEE-EGGG---TRLTLTHSGFP-----DDDEEEEGMEQGWEQMLDRLKAYLE 124 (124)
T ss_dssp CEEEEEEEEEEE-ETTE---EEEEEEEEEEH-----SHHHHHHCHHHHHHHHHHHHHHHHH
T ss_pred CCceEEEEEEEE-cCCc---EEEEEEEEcCC-----ccHHHHHHHHHHHHHHHHHHHHHhC
Confidence 223334445565 2232 433 2222211 1222222266667888899999887
No 35
>cd07826 SRPBCC_CalC_Aha1-like_9 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=97.46 E-value=0.0051 Score=48.55 Aligned_cols=136 Identities=8% Similarity=-0.012 Sum_probs=69.2
Q ss_pred EEeEEEecChHHHHHHhhcCCCCCcccccc-ceeEEccCCCCCcceEEEEEeec-CCCcceeeEeeceecCCCC-EEEEE
Q 046151 62 LLAQRIRAPNDVVWSIVRRFDQPQTYKHFI-KSCSVSDNFTMAVGSTRDVNVIS-GLPAATSTERLDILDDDRQ-VTGFS 138 (209)
Q Consensus 62 ~v~~~I~APa~~VW~vVrdF~~~~~w~p~V-~s~e~~eGd~g~vGsvR~lt~~~-G~p~~~~~ErLd~lDd~~~-~~sY~ 138 (209)
++.++|+||+++||.++-+-..++.|...- -.+...+.| -.+|..-.+.+.. ++....+.=+...+|+.++ .|++.
T Consensus 3 ~i~r~~~ap~e~Vw~a~Tdpe~l~~W~~p~~~~~~~~~~d-~r~GG~~~~~~~~~~g~~~~~~g~~~ei~p~~~l~~t~~ 81 (142)
T cd07826 3 VITREFDAPRELVFRAHTDPELVKRWWGPRGLTMTVCECD-IRVGGSYRYVHRAPDGEEMGFHGVYHEVTPPERIVQTEE 81 (142)
T ss_pred EEEEEECCCHHHHHHHhCCHHHHhhccCCCCCcceEEEEe-ccCCCEEEEEEECCCCCEecceEEEEEEcCCCEEEEEeE
Confidence 467899999999999988766655554321 111122222 2455544444432 2111123445666776543 34444
Q ss_pred EeecccCccceEEEEEEEeecCCCCceEEEEEEeeecCCCCCCHHHHHHHHHHHHHHHHHHHHHHHh
Q 046151 139 IIGGEHRLRNYRSVTSVHGFNRDGAICTVVLESYVVDVPEGNTEEDTRLFADTVVKLNLQKLVSVAE 205 (209)
Q Consensus 139 iieG~~p~~~Y~sti~V~~~~~~g~~~T~v~~s~~~d~P~g~~~e~a~~~i~~v~k~gL~~Lk~~~E 205 (209)
+.+. +...-..++++.+. ++ +|.+.-...+. .+...+......+..-....|++|++.++
T Consensus 82 ~~~~--~~~~s~v~~~l~~~--~~--gT~l~l~~~~~-~~~~~~~~~~~~~~~Gw~~~l~~L~~~l~ 141 (142)
T cd07826 82 FEGL--PDGVALETVTFTEL--GG--RTRLTATSRYP-SKEARDGVLASGMEEGMEESYDRLDELLA 141 (142)
T ss_pred ecCC--CCCceEEEEEEEEC--CC--CEEEEEEEEeC-CHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 4322 22222344455653 22 25443323331 11111223445666778888999988775
No 36
>COG5637 Predicted integral membrane protein [Function unknown]
Probab=97.43 E-value=0.0031 Score=53.79 Aligned_cols=138 Identities=14% Similarity=0.168 Sum_probs=85.8
Q ss_pred CCCceeeEEeEEEecChHHHHHHhhcCCCCCccccccceeEEccCCCCCcceEEEEEeec--CCCcceeeEeeceecCCC
Q 046151 55 SQNQCSSLLAQRIRAPNDVVWSIVRRFDQPQTYKHFIKSCSVSDNFTMAVGSTRDVNVIS--GLPAATSTERLDILDDDR 132 (209)
Q Consensus 55 ~~~~~~~~v~~~I~APa~~VW~vVrdF~~~~~w~p~V~s~e~~eGd~g~vGsvR~lt~~~--G~p~~~~~ErLd~lDd~~ 132 (209)
.|..++.. ++|++|+++||.+.+||-+++.|+-.+.|+++.+.. . -+|++.. |+-+.+- -++ .-|..+
T Consensus 68 ~~i~v~~~--V~I~kPae~vy~~W~dLe~lP~~Mkhl~SVkVlddk--r----SrW~~~ap~g~~v~We-a~i-t~d~~~ 137 (217)
T COG5637 68 KPIEVEVQ--VTIDKPAEQVYAYWRDLENLPLWMKHLDSVKVLDDK--R----SRWKANAPLGLEVEWE-AEI-TKDIPG 137 (217)
T ss_pred CceEEEEE--EEeCChHHHHHHHHHhhhhhhHHHHhhceeeccCCC--c----cceeEcCCCCceEEEe-ehh-hccCCC
Confidence 34444444 689999999999999999999999999999998654 1 2354432 2222221 222 247888
Q ss_pred CEEEEEEeecccCccceEEEEEEEeecCCCCceEEEEEEeeecCCCCCCHHH-HHH---HHHHHHHHHHHHHHHHHhhc
Q 046151 133 QVTGFSIIGGEHRLRNYRSVTSVHGFNRDGAICTVVLESYVVDVPEGNTEED-TRL---FADTVVKLNLQKLVSVAESQ 207 (209)
Q Consensus 133 ~~~sY~iieG~~p~~~Y~sti~V~~~~~~g~~~T~v~~s~~~d~P~g~~~e~-a~~---~i~~v~k~gL~~Lk~~~E~~ 207 (209)
..|.+.=++|.- +.| +..+.+.+.+.+. |.|.=...+.+|-+-.... ++. ..+.-++.-|+..|...|..
T Consensus 138 e~I~W~Sl~Ga~-v~N-sG~VrF~~~pg~~---t~V~v~lsY~~Pgg~~~a~va~~fgeepeqqI~~DL~RFk~~~e~~ 211 (217)
T COG5637 138 ERIQWESLPGAR-VEN-SGAVRFYDAPGDS---TEVKVTLSYRPPGGLLGAVVAKLFGEEPEQQIQDDLERFKEYQENG 211 (217)
T ss_pred cEEeeecCCCCc-CCC-CccEEeeeCCCCc---eEEEEEEEecCCccHHHHHHHHHhccchHHHHHHHHHHHHHHHHcc
Confidence 899999888742 333 3344555544332 5554444444555533222 222 23455788888888887763
No 37
>cd08891 SRPBCC_CalC Ligand-binding SRPBCC domain of Micromonospora echinospora CalC and related proteins. This subfamily includes Micromonospora echinospora CalC (MeCalC) and related proteins. These proteins belong to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins which bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. MeCalC confers resistance to the enediyne, calicheamicin gamma 1 (CLM). Enediyne antibiotics are antitumor agents. Enediynes have an in vitro and in vivo role as DNA damaging agents; they consist of a DNA recognition unit (e.g., aryltetrasaccharide of CLM), an activating component (e.g., methyl trisulfide of CLM), which promotes cycloaromatization, and the enediyne warhead which cycloaromatizes to a reactive diradical species, resulting in oxidative strand cleavage of the targeted DNA sequence. MeCalC confers resistance to CLM by a self sacrificing mechanism: the transient enediyne diradical speci
Probab=97.35 E-value=0.0064 Score=48.12 Aligned_cols=132 Identities=12% Similarity=-0.018 Sum_probs=64.4
Q ss_pred EeEEEecChHHHHHHhhcCCCCCccc-cc-------cceeEEccCCCCCcceEEEEEeecCCCcceeeEeeceecCCCCE
Q 046151 63 LAQRIRAPNDVVWSIVRRFDQPQTYK-HF-------IKSCSVSDNFTMAVGSTRDVNVISGLPAATSTERLDILDDDRQV 134 (209)
Q Consensus 63 v~~~I~APa~~VW~vVrdF~~~~~w~-p~-------V~s~e~~eGd~g~vGsvR~lt~~~G~p~~~~~ErLd~lDd~~~~ 134 (209)
..++|+||+++||.++-+ .+..|. |. ...|++. ..+|..-.....+|. ....=+..++|+.++
T Consensus 4 ~~~~i~Ap~e~Vw~a~t~--~l~~W~~p~~~~~~~~~~~~~~d----~~~GG~~~~~~~~g~--~~~~g~v~~v~p~~~- 74 (149)
T cd08891 4 KSVTVPAPPERAFEVFTE--GFGAWWPPEYHFVFSPGAEVVFE----PRAGGRWYEIGEDGT--ECEWGTVLAWEPPSR- 74 (149)
T ss_pred EEEEecCCHHHHHHHHHh--chhhccCCCcccccCCCccEEEc----ccCCcEEEEecCCCc--EeceEEEEEEcCCCE-
Confidence 457899999999999988 344553 32 2344443 134433222222231 122345666776654
Q ss_pred EEEEEe-ec-ccCccceEEEE--EEEeecCCCCceEEEEEEeeecCCCC--CCHHHHHHHHHHHHHHHHHHHHHHHhh
Q 046151 135 TGFSII-GG-EHRLRNYRSVT--SVHGFNRDGAICTVVLESYVVDVPEG--NTEEDTRLFADTVVKLNLQKLVSVAES 206 (209)
Q Consensus 135 ~sY~ii-eG-~~p~~~Y~sti--~V~~~~~~g~~~T~v~~s~~~d~P~g--~~~e~a~~~i~~v~k~gL~~Lk~~~E~ 206 (209)
+.|+-. .. ..+...+.+.+ ++.+..+++ |.+.=........+ ..++.....+..--..-|+.|++.+|+
T Consensus 75 l~~tw~~~~~~~~~~~~~t~vt~~l~~~~~~g---T~ltl~~~~~~~~~~~~~~~~~~~~~~~GW~~~L~~L~~~l~~ 149 (149)
T cd08891 75 LVFTWQINADWRPDPDKASEVEVRFEAVGAEG---TRVELEHRGFERHGDGWEAAAMRMGYDGGWPLLLERYAAAAEK 149 (149)
T ss_pred EEEEeccCCCcCcCCCCceEEEEEEEECCCCC---eEEEEEEecccccCcchhhHHHHhcccCcHHHHHHHHHHHhcC
Confidence 556643 11 11222233444 445432122 44322222111222 122333444455566679999999885
No 38
>cd08892 SRPBCC_Aha1 Putative hydrophobic ligand-binding SRPBCC domain of the Hsp90 co-chaperone Aha1 and related proteins. This subfamily includes the C-terminal SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of Aha1, and related domains. Proteins in this group belong to the SRPBCC domain superfamily of proteins which bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Aha1 is one of several co-chaperones, which regulate the dimeric chaperone Hsp90. Hsp90, Aha1, and other accessory proteins interact in a chaperone cycle driven by ATP binding and hydrolysis. Aha1 promotes dimerization of the N-terminal domains of Hsp90, and stimulates its low intrinsic ATPase activity. One Aha1 molecule binds per Hsp90 dimer. The N- and C- terminal domains of Aha1 cooperatively bind across the dimer interface of Hsp90. The C-terminal domain of Aha1 binds the N-terminal Hsp90 ATPase domain. Aha1 may regulate the dwell time of Hsp90 with client proteins. Aha1 m
Probab=97.35 E-value=0.01 Score=46.03 Aligned_cols=121 Identities=11% Similarity=0.055 Sum_probs=63.2
Q ss_pred EEeEEEecChHHHHHHhhcCCCCCccccccceeEEccCCCCCcceEEEEEeecCCCcceeeEeeceecCCCCEEEEEEee
Q 046151 62 LLAQRIRAPNDVVWSIVRRFDQPQTYKHFIKSCSVSDNFTMAVGSTRDVNVISGLPAATSTERLDILDDDRQVTGFSIIG 141 (209)
Q Consensus 62 ~v~~~I~APa~~VW~vVrdF~~~~~w~p~V~s~e~~eGd~g~vGsvR~lt~~~G~p~~~~~ErLd~lDd~~~~~sY~iie 141 (209)
.+++.|+||+++||+++-+-..++.|.....+.++..| |..+ +.+| .+.=+...+++.+ .+.|+---
T Consensus 3 ~~~r~i~ap~e~Vw~A~T~~e~l~~W~~~~~~~d~~~G-----G~~~---~~~g----~~~g~~~~i~p~~-~l~~~w~~ 69 (126)
T cd08892 3 SLTETFQVPAEELYEALTDEERVQAFTRSPAKVDAKVG-----GKFS---LFGG----NITGEFVELVPGK-KIVQKWRF 69 (126)
T ss_pred EEEEEECCCHHHHHHHHCCHHHHHhhcCCCceecCCCC-----CEEE---EeCC----ceEEEEEEEcCCC-EEEEEEEc
Confidence 35688999999999999987777778643333333332 2333 2334 2333456666543 35555432
Q ss_pred cccCccceEEEE--EEEeecCCCCceEEEEEEeeecCCCCCCHHHHHHHHHHHHHHHHHHHHHHHh
Q 046151 142 GEHRLRNYRSVT--SVHGFNRDGAICTVVLESYVVDVPEGNTEEDTRLFADTVVKLNLQKLVSVAE 205 (209)
Q Consensus 142 G~~p~~~Y~sti--~V~~~~~~g~~~T~v~~s~~~d~P~g~~~e~a~~~i~~v~k~gL~~Lk~~~E 205 (209)
.+.+.. ..+++ .+.+. ++ +|.+.=.... .|.+ +....-.++-..-|++|++.+|
T Consensus 70 ~~~~~~-~~s~v~~~l~~~--~~--gT~ltl~~~g-~~~~----~~~~~~~GW~~~~~~~l~~~~~ 125 (126)
T cd08892 70 KSWPEG-HYSTVTLTFTEK--DD--ETELKLTQTG-VPAG----EEERTREGWERYYFESIKQTFG 125 (126)
T ss_pred CCCCCC-CcEEEEEEEEEC--CC--CEEEEEEEEC-CCCc----hHHHHHhhHHHHHHHHHHHHhC
Confidence 222221 22334 44543 22 2543222222 2332 2233445555567889998876
No 39
>COG3832 Uncharacterized conserved protein [Function unknown]
Probab=97.21 E-value=0.0086 Score=48.31 Aligned_cols=133 Identities=11% Similarity=0.030 Sum_probs=67.7
Q ss_pred EEeEEEecChHHHHHHhhcCCCCCccccccceeEEccCCCCCcc--eEEEEEeecCCCcceeeEeeceecCCCC-EEEEE
Q 046151 62 LLAQRIRAPNDVVWSIVRRFDQPQTYKHFIKSCSVSDNFTMAVG--STRDVNVISGLPAATSTERLDILDDDRQ-VTGFS 138 (209)
Q Consensus 62 ~v~~~I~APa~~VW~vVrdF~~~~~w~p~V~s~e~~eGd~g~vG--svR~lt~~~G~p~~~~~ErLd~lDd~~~-~~sY~ 138 (209)
.+..+|+||+++||.++-+-..+..|.. -..|++. ..+| ....+... +++.....-+..++++..+ +|+|.
T Consensus 11 ~~er~i~aP~e~Vf~A~Tdpe~l~~W~~-~~~~~~d----~r~gg~~~~~~~~~-~g~~~~~~~~~~~v~p~~rIv~tw~ 84 (149)
T COG3832 11 EIERLIDAPPEKVFEALTDPELLARWFM-PGGAEFD----ARTGGGERVRFRGP-DGPVHSFEGEYLEVVPPERIVFTWD 84 (149)
T ss_pred EEEEeecCCHHHHHHHhcCHHHHHhhcC-CCCCccc----eecCCceEEeeecC-CCCeeecceEEEEEcCCcEEEEEec
Confidence 4567899999999999999888888875 3221111 1122 22223332 2233344566666776655 33444
Q ss_pred EeecccCccceEEEEEEEeecCCCCceEEEEEEeeecCCCCCCHHHHHHH--HHHHHHHHHHHHHHHHh
Q 046151 139 IIGGEHRLRNYRSVTSVHGFNRDGAICTVVLESYVVDVPEGNTEEDTRLF--ADTVVKLNLQKLVSVAE 205 (209)
Q Consensus 139 iieG~~p~~~Y~sti~V~~~~~~g~~~T~v~~s~~~d~P~g~~~e~a~~~--i~~v~k~gL~~Lk~~~E 205 (209)
.-+++.+...-..++++.+...++ ++..+.-..+ +- ..+.+.+.. +..-...-|++|++.++
T Consensus 85 ~~~~~~~~~~~~v~~~l~~~~~g~--~~~~~~~~~~--~~-~~~~~~~~~~~~~~Gw~~~~~~l~~~l~ 148 (149)
T COG3832 85 FDEDGEPFLKSLVTITLTPEDDGG--TTTLVRTSGG--GF-LEDEDQKLGMGMEEGWGQLLDNLKALLE 148 (149)
T ss_pred cCCCCCcccCceEEEEEEEecCCC--cEEEEEEeec--cc-cchhHHHhCcchhhhHHHHHHHHHHhhc
Confidence 444444432234455666654333 2333222221 10 122222222 24446666777777665
No 40
>PF06240 COXG: Carbon monoxide dehydrogenase subunit G (CoxG); InterPro: IPR010419 The CO dehydrogenase structural genes coxMSL are flanked by nine accessory genes arranged as the cox gene cluster. The cox genes are specifically and coordinately transcribed under chemolithoautotrophic conditions in the presence of CO as carbon and energy source [].; PDB: 2NS9_A 2PCS_A.
Probab=97.04 E-value=0.01 Score=47.04 Aligned_cols=100 Identities=19% Similarity=0.156 Sum_probs=59.2
Q ss_pred EEEecChHHHHHHhhcCCCCCccccccceeEEccCCCCCcceEEEEEeecCCCcc---eeeEeeceecCCCCEEEEEEee
Q 046151 65 QRIRAPNDVVWSIVRRFDQPQTYKHFIKSCSVSDNFTMAVGSTRDVNVISGLPAA---TSTERLDILDDDRQVTGFSIIG 141 (209)
Q Consensus 65 ~~I~APa~~VW~vVrdF~~~~~w~p~V~s~e~~eGd~g~vGsvR~lt~~~G~p~~---~~~ErLd~lDd~~~~~sY~iie 141 (209)
.+|+||+++||+++.|...+....|.+++.+..+ + .-.+.+ +++-| |.. ..+=++..+|+.++.. .++-+
T Consensus 3 ~~v~a~~~~vw~~l~D~~~l~~ciPG~~~~e~~~-~-~~~~~~---~v~vG-~i~~~~~g~~~~~~~~~~~~~~-~~~~g 75 (140)
T PF06240_consen 3 FEVPAPPEKVWAFLSDPENLARCIPGVESIEKVG-D-EYKGKV---KVKVG-PIKGTFDGEVRITEIDPPESYT-LEFEG 75 (140)
T ss_dssp EEECS-HHHHHHHHT-HHHHHHHSTTEEEEEEEC-T-EEEEEE---EEESC-CCEEEEEEEEEEEEEETTTEEE-EEEEE
T ss_pred EEecCCHHHHHHHhcCHHHHHhhCCCcEEeeecC-c-EEEEEE---EEEec-cEEEEEEEEEEEEEcCCCcceE-eeeec
Confidence 4799999999999999999999999999998875 3 112222 22222 321 2234556666666653 44443
Q ss_pred cccCccce--EEEEEEEeecCCCCceEEEEEEeeec
Q 046151 142 GEHRLRNY--RSVTSVHGFNRDGAICTVVLESYVVD 175 (209)
Q Consensus 142 G~~p~~~Y--~sti~V~~~~~~g~~~T~v~~s~~~d 175 (209)
.+. .... ...+++...+ ++ . |.+.|...++
T Consensus 76 ~g~-~~~~~~~~~~~~~~~~-~~-~-T~v~~~~~~~ 107 (140)
T PF06240_consen 76 RGR-GGGSSASANITLSLED-DG-G-TRVTWSADVE 107 (140)
T ss_dssp EEC-TCCEEEEEEEEEEECC-CT-C-EEEEEEEEEE
T ss_pred cCC-ccceEEEEEEEEEcCC-CC-C-cEEEEEEEEE
Confidence 332 2233 3344444332 22 3 8899988876
No 41
>cd08901 SRPBCC_CalC_Aha1-like_8 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=96.96 E-value=0.023 Score=44.44 Aligned_cols=126 Identities=14% Similarity=0.010 Sum_probs=64.9
Q ss_pred eEEEecChHHHHHHhhcCCCCCccccccceeEEccCCCCCcceEEEEEeecCCCcceeeEeeceecCCCCEEEEEEeecc
Q 046151 64 AQRIRAPNDVVWSIVRRFDQPQTYKHFIKSCSVSDNFTMAVGSTRDVNVISGLPAATSTERLDILDDDRQVTGFSIIGGE 143 (209)
Q Consensus 64 ~~~I~APa~~VW~vVrdF~~~~~w~p~V~s~e~~eGd~g~vGsvR~lt~~~G~p~~~~~ErLd~lDd~~~~~sY~iieG~ 143 (209)
...|+||+++||.++-+-..++.|...-.+.++. +|..-.+.+...++ .+.=+...+++. +.+.|+...++
T Consensus 5 ~~~i~ap~e~Vw~a~t~p~~l~~W~~~~~~~~~~------~Gg~~~~~~~~~~~--~~~g~~~~~~p~-~~l~~~w~~~~ 75 (136)
T cd08901 5 AMLIRRPVAEVFEAFVDPEITTKFWFTGSSGRLE------EGKTVTWDWEMYGA--SVPVNVLEIEPN-KRIVIEWGDPG 75 (136)
T ss_pred EEEecCCHHHHHHHhcCHHHhccccccCCCcccc------CCCEEEEEEEccCC--ceEEEEEEEcCC-CEEEEEecCCC
Confidence 4679999999999999988877763222233333 34332344433322 222355566554 55667764321
Q ss_pred cCccceEEEEEEEeecCCCCceEEEEEEeeecCCCCCCHHHH--HHHHHHHHHHHHHHHHHHHhh
Q 046151 144 HRLRNYRSVTSVHGFNRDGAICTVVLESYVVDVPEGNTEEDT--RLFADTVVKLNLQKLVSVAES 206 (209)
Q Consensus 144 ~p~~~Y~sti~V~~~~~~g~~~T~v~~s~~~d~P~g~~~e~a--~~~i~~v~k~gL~~Lk~~~E~ 206 (209)
+ .-..++++.+.+. + +|.+.=. ....|.. ..+.. ...+..-...-|++|++.+|.
T Consensus 76 -~--~s~v~~~l~~~~~-g--gT~ltl~-~~~~~~~-~~~~~~~~~~~~~GW~~~L~~L~~~le~ 132 (136)
T cd08901 76 -E--PTTVEWTFEELDD-G--RTFVTIT-ESGFPGT-DDEGLKQALGSTEGWTLVLAGLKAYLEH 132 (136)
T ss_pred -C--CEEEEEEEEECCC-C--cEEEEEE-ECCCCCC-cHHHHHHHhcCCCCHHHHHHHHHHHHhc
Confidence 1 1122345554321 2 2433211 2222333 22111 122334567779999999885
No 42
>PF08982 DUF1857: Domain of unknown function (DUF1857); InterPro: IPR015075 This protein has no known function. It is found in various hypothetical bacterial and fungal proteins. ; PDB: 2FFS_B.
Probab=95.55 E-value=0.13 Score=42.15 Aligned_cols=59 Identities=27% Similarity=0.403 Sum_probs=41.3
Q ss_pred hHHHHHHhh-cCCCCCccccccceeEEccCCCCCcceEEEEEeecCCCcceeeEeeceecCCCCEEEE
Q 046151 71 NDVVWSIVR-RFDQPQTYKHFIKSCSVSDNFTMAVGSTRDVNVISGLPAATSTERLDILDDDRQVTGF 137 (209)
Q Consensus 71 a~~VW~vVr-dF~~~~~w~p~V~s~e~~eGd~g~vGsvR~lt~~~G~p~~~~~ErLd~lDd~~~~~sY 137 (209)
.++||.-+. .--+|+.+-|.|.+|++.+.. ...-.|.|+|. + ..++|+....-+. .+.|
T Consensus 20 r~QlW~GL~~kar~p~~Fvp~i~~c~Vl~e~--~~~~~R~v~fg-~---~~v~E~v~~~~~~--~V~f 79 (149)
T PF08982_consen 20 REQLWRGLVLKARNPQLFVPGIDSCEVLSES--DTVLTREVTFG-G---ATVRERVTLYPPE--RVDF 79 (149)
T ss_dssp HHHHHHHHHHHHH-GGGT-TT--EEEEEEE---SSEEEEEEEET-T---EEEEEEEEEETTT--EEEE
T ss_pred HHHHHHHHHHHHhChhhCccccCeEEEEecC--CCeEEEEEEEC-C---cEEEEEEEEeCCc--EEEE
Confidence 358999855 567799999999999998653 55778999992 3 5899999866554 5666
No 43
>cd08863 SRPBCC_DUF1857 DUF1857, an uncharacterized ligand-binding domain of the SRPBCC domain superfamily. Uncharacterized family of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins
Probab=95.53 E-value=0.91 Score=37.11 Aligned_cols=63 Identities=16% Similarity=0.202 Sum_probs=47.4
Q ss_pred hHHHHHH-hhcCCCCCccccccceeEEccCCCCCcceEEEEEeecCCCcceeeEeeceecCCCCEEEEEEee
Q 046151 71 NDVVWSI-VRRFDQPQTYKHFIKSCSVSDNFTMAVGSTRDVNVISGLPAATSTERLDILDDDRQVTGFSIIG 141 (209)
Q Consensus 71 a~~VW~v-VrdF~~~~~w~p~V~s~e~~eGd~g~vGsvR~lt~~~G~p~~~~~ErLd~lDd~~~~~sY~iie 141 (209)
.+++|.- +++--+|+.+-|.|.+|++.+.. .--..|.|+|..+ .++|+....-+ ..+.|.+-.
T Consensus 19 r~QlW~GL~~kar~p~~Fvp~i~~c~Vl~e~--~~~l~Rel~f~~~----~v~e~vt~~~~--~~v~f~~~~ 82 (141)
T cd08863 19 RAQLWRGLVLRAREPQLFVPGLDRCEVLSES--GTVLERELTFGPA----KIRETVTLEPP--SRVHFLQAD 82 (141)
T ss_pred HHHHHhHHHhhhCCchhcccccceEEEEecC--CCEEEEEEEECCc----eEEEEEEecCC--cEEEEEecC
Confidence 4699987 55678899999999999998654 2246699999654 78899885433 457777754
No 44
>COG4276 Uncharacterized conserved protein [Function unknown]
Probab=95.06 E-value=1.6 Score=35.93 Aligned_cols=131 Identities=22% Similarity=0.258 Sum_probs=81.2
Q ss_pred EEEecChHHHHHHhhcCCCCCccccccceeEEccCCCCCcceEEEEEee---cCCCcc-eeeEeece--ecCCCCEEEEE
Q 046151 65 QRIRAPNDVVWSIVRRFDQPQTYKHFIKSCSVSDNFTMAVGSTRDVNVI---SGLPAA-TSTERLDI--LDDDRQVTGFS 138 (209)
Q Consensus 65 ~~I~APa~~VW~vVrdF~~~~~w~p~V~s~e~~eGd~g~vGsvR~lt~~---~G~p~~-~~~ErLd~--lDd~~~~~sY~ 138 (209)
.+|+||.+.||+.-.+-++++.--|--+ +..-.|+ .++..-++++. -|.|.+ +-+-|.++ +|+-. +++=.
T Consensus 8 ~~i~aP~E~VWafhsrpd~lq~LTppw~-VV~p~g~--eitqgtri~m~l~pfglp~~~tW~Arhte~~~d~~~-~FtDv 83 (153)
T COG4276 8 TTITAPHEMVWAFHSRPDALQRLTPPWI-VVLPLGS--EITQGTRIAMGLTPFGLPAGLTWVARHTESGFDNGS-RFTDV 83 (153)
T ss_pred eEecCCHHHHhhhhcCccHHHhcCCCcE-EeccCCC--cccceeeeeecceeecCCCCceEEEEeeecccCCcc-eeeee
Confidence 4799999999999988888655444333 3333443 56655555553 244432 34455555 55543 35555
Q ss_pred EeecccCccceEEEEEEEeecCCCCceEEEEEEeeecCCCCCC-----HHHHHHHHHHHHHHHHHHHHHH
Q 046151 139 IIGGEHRLRNYRSVTSVHGFNRDGAICTVVLESYVVDVPEGNT-----EEDTRLFADTVVKLNLQKLVSV 203 (209)
Q Consensus 139 iieG~~p~~~Y~sti~V~~~~~~g~~~T~v~~s~~~d~P~g~~-----~e~a~~~i~~v~k~gL~~Lk~~ 203 (209)
.+.|++|--|++-+-+..+ ++| +|+..-+-.+.+|.+.. .-.+..+.+.+|+.-=..|++-
T Consensus 84 ~i~gPfp~~~WrHtH~F~~--egg--~TvliD~Vsye~p~g~~~~~~g~~l~q~~l~~mFr~Rhs~l~r~ 149 (153)
T COG4276 84 CITGPFPALNWRHTHNFVD--EGG--GTVLIDSVSYELPAGTLTGMFGYRLTQLILDLMFRSRHSTLFRG 149 (153)
T ss_pred eecCCccceeeEEEeeeec--CCC--cEEEEeeEEeeccCcceechhhhhhHHHHHHHHHHHHHHHHhhc
Confidence 6788888777776666553 233 58888877777887732 2234567777777655555543
No 45
>cd08868 START_STARD1_3_like Cholesterol-binding START domain of mammalian STARD1, -3 and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD1 (also known as StAR) and STARD3 (also known as metastatic lymph node 64/MLN64). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. This STARD1-like subfamily has a high affinity for cholesterol. STARD1/StAR can reduce macrophage lipid content and inflammatory status. It plays an essential role in steroidogenic tissues: transferring the steroid precursor, cholesterol, from the outer to the inner mitochondrial membrane, across the aqueous space. Mutations in the gene encoding STARD1/StAR can cause lipid congenital adrenal hyperplasia (CAH), an autosomal recessive disorder characterized by a steroid synth
Probab=94.91 E-value=1.4 Score=37.04 Aligned_cols=151 Identities=9% Similarity=0.004 Sum_probs=80.4
Q ss_pred CCCCceeeEEeEEEecChHHHHH-HhhcCCCCCccccccceeEEccCCCCCcceEEEEEeec-CCCcc---eeeEeecee
Q 046151 54 LSQNQCSSLLAQRIRAPNDVVWS-IVRRFDQPQTYKHFIKSCSVSDNFTMAVGSTRDVNVIS-GLPAA---TSTERLDIL 128 (209)
Q Consensus 54 ~~~~~~~~~v~~~I~APa~~VW~-vVrdF~~~~~w~p~V~s~e~~eGd~g~vGsvR~lt~~~-G~p~~---~~~ErLd~l 128 (209)
+.+.++.-. ...|+||+++|+. ++.|.+..+.|-+.+..+++.+..++..--+..++... +.|++ .+.-|--..
T Consensus 44 ~~~~~~~k~-~~~i~~~~~~v~~~l~~d~~~~~~Wd~~~~~~~~i~~~d~~~~i~y~~~~~~~~~~vs~RDfV~~r~~~~ 122 (208)
T cd08868 44 PGVGKVFRL-TGVLDCPAEFLYNELVLNVESLPSWNPTVLECKIIQVIDDNTDISYQVAAEAGGGLVSPRDFVSLRHWGI 122 (208)
T ss_pred CCCceEEEE-EEEEcCCHHHHHHHHHcCccccceecCcccceEEEEEecCCcEEEEEEecCcCCCcccccceEEEEEEEe
Confidence 444444443 4588999999985 56789999999999999988755322222223222111 12321 121122222
Q ss_pred cCCCCEEEEEEee--------cccCccceEEEEEEEeecCCCCceEEEEEEeeecCCCCCCHHHH-HHHHHHHHHHHHHH
Q 046151 129 DDDRQVTGFSIIG--------GEHRLRNYRSVTSVHGFNRDGAICTVVLESYVVDVPEGNTEEDT-RLFADTVVKLNLQK 199 (209)
Q Consensus 129 Dd~~~~~sY~iie--------G~~p~~~Y~sti~V~~~~~~g~~~T~v~~s~~~d~P~g~~~e~a-~~~i~~v~k~gL~~ 199 (209)
++....+...-++ |-++...+.+...++|.++ +..+|.+.+....| |-|.--.-. ..++....-.-|++
T Consensus 123 ~~~~~~i~~~sv~h~~~P~~~g~VR~~~~~~~~~i~p~~~-~~~~t~v~~~~~~D-p~G~iP~~lvN~~~~~~~~~~~~~ 200 (208)
T cd08868 123 RENCYLSSGVSVEHPAMPPTKNYVRGENGPGCWILRPLPN-NPNKCNFTWLLNTD-LKGWLPQYLVDQALASVLLDFMKH 200 (208)
T ss_pred cCCeEEEEEEeccCCCCCCCCCeEEEeccccEEEEEECCC-CCCceEEEEEEEEC-CCCCCcceeeehhhHHHHHHHHHH
Confidence 3333322222222 2234555556667777643 22357777766666 444422222 23444445566778
Q ss_pred HHHHHhhc
Q 046151 200 LVSVAESQ 207 (209)
Q Consensus 200 Lk~~~E~~ 207 (209)
|++.++.|
T Consensus 201 Lr~~~~~~ 208 (208)
T cd08868 201 LRKRIATL 208 (208)
T ss_pred HHHHHhhC
Confidence 88877654
No 46
>cd08905 START_STARD1-like Cholesterol-binding START domain of mammalian STARD1 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD1 (also known as StAR) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD1 has a high affinity for cholesterol. It can reduce macrophage lipid content and inflammatory status. It plays an essential role in steroidogenic tissues: transferring the steroid precursor, cholesterol, from the outer to the inner mitochondrial membrane, across the aqueous space. Mutations in the gene encoding STARD1/StAR can cause lipid congenital adrenal hyperplasia (CAH), an autosomal recessive disorder characterized by a steroid synthesis deficiency and an accumulation of cholesterol in
Probab=94.78 E-value=1.4 Score=37.43 Aligned_cols=146 Identities=15% Similarity=0.080 Sum_probs=81.4
Q ss_pred ceeeEEeEEEecChHHHH-HHhhcCCCCCccccccceeEEccCCCCCcceEEEEEeec-CCCcc---eeeEeeceecCCC
Q 046151 58 QCSSLLAQRIRAPNDVVW-SIVRRFDQPQTYKHFIKSCSVSDNFTMAVGSTRDVNVIS-GLPAA---TSTERLDILDDDR 132 (209)
Q Consensus 58 ~~~~~v~~~I~APa~~VW-~vVrdF~~~~~w~p~V~s~e~~eGd~g~vGsvR~lt~~~-G~p~~---~~~ErLd~lDd~~ 132 (209)
+-.- ....|++|+++|+ .++-|....+.|.+.+.++++++-.+...=-++.++... +.+++ .+.-|...-++.+
T Consensus 49 k~~k-~e~~i~~~~~~l~~~l~~d~e~~~~W~~~~~~~~vl~~id~~~~i~y~~~~p~p~~~vs~RD~V~~~~~~~~~~~ 127 (209)
T cd08905 49 KVFR-LEVVVDQPLDNLYSELVDRMEQMGEWNPNVKEVKILQRIGKDTLITHEVAAETAGNVVGPRDFVSVRCAKRRGST 127 (209)
T ss_pred cEEE-EEEEecCCHHHHHHHHHhchhhhceecccchHHHHHhhcCCCceEEEEEeccCCCCccCccceEEEEEEEEcCCc
Confidence 4444 4468999999999 777789999999999999998754311221234332211 11121 2222222223333
Q ss_pred CEE-EEEEe-------ecccCccceEEEEEEEeecCCCCceEEEEEEeeecCCCCCCHH-HHHHHHHHHHHHHHHHHHHH
Q 046151 133 QVT-GFSII-------GGEHRLRNYRSVTSVHGFNRDGAICTVVLESYVVDVPEGNTEE-DTRLFADTVVKLNLQKLVSV 203 (209)
Q Consensus 133 ~~~-sY~ii-------eG~~p~~~Y~sti~V~~~~~~g~~~T~v~~s~~~d~P~g~~~e-~a~~~i~~v~k~gL~~Lk~~ 203 (209)
..+ ..++. .|-++..+..+...++|.+++ ..+|.+.|....| |-|.--. -...++...--.-|.+|++.
T Consensus 128 ~~~~~~s~~~~~~P~~~~~VR~~~~~~~w~l~p~~~~-~~~t~v~~~~~~D-pkG~iP~~lvN~~~~~~~~~~~~~Lr~~ 205 (209)
T cd08905 128 CVLAGMATHFGLMPEQKGFIRAENGPTCIVLRPLAGD-PSKTKLTWLLSID-LKGWLPKSIINQVLSQTQVDFANHLRQR 205 (209)
T ss_pred EEEEEEeecCCCCCCCCCeEEEEeeccEEEEEECCCC-CCceEEEEEEeec-CCCCCCHHHHHHHhHHhHHHHHHHHHHH
Confidence 322 22221 122234455555567776432 1247777766666 5565322 33466666666778888888
Q ss_pred Hhh
Q 046151 204 AES 206 (209)
Q Consensus 204 ~E~ 206 (209)
++.
T Consensus 206 ~~~ 208 (209)
T cd08905 206 MAS 208 (209)
T ss_pred Hhc
Confidence 764
No 47
>cd08874 START_STARD9-like C-terminal START domain of mammalian STARD9, and related domains; lipid binding. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD9 (also known as KIAA1300), and related domains. The START domain family belongs to the SRPBCC (START/RHO_alpha_C /PITP /Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Some members of this subfamily have N-terminal kinesin motor domains. STARD9 interacts with supervillin, a protein important for efficient cytokinesis, perhaps playing a role in coordinating microtubule motors with actin and myosin II functions at membranes. The human gene encoding STARD9 lies within a target region for LGMD2A, an autosomal recessive form of limb-girdle muscular dystrophy.
Probab=93.49 E-value=2.2 Score=36.53 Aligned_cols=46 Identities=26% Similarity=0.367 Sum_probs=36.7
Q ss_pred EEEecChHHHHHHhhcCCCCCccccccceeEEccCCCCCcceEEEE
Q 046151 65 QRIRAPNDVVWSIVRRFDQPQTYKHFIKSCSVSDNFTMAVGSTRDV 110 (209)
Q Consensus 65 ~~I~APa~~VW~vVrdF~~~~~w~p~V~s~e~~eGd~g~vGsvR~l 110 (209)
.+|+||+++||+++.|...-+.|-+.++++++.+-.+....-++..
T Consensus 51 ~~v~as~~~v~~ll~D~~~r~~Wd~~~~~~~vl~~~~~d~~i~y~~ 96 (205)
T cd08874 51 GVIKAPLATVWKAVKDPRTRFLYDTMIKTARIHKTFTEDICLVYLV 96 (205)
T ss_pred EEEcCCHHHHHHHHhCcchhhhhHHhhhheeeeeecCCCeEEEEEE
Confidence 3689999999999999999999999999999986543344434443
No 48
>PTZ00220 Activator of HSP-90 ATPase; Provisional
Probab=92.88 E-value=1.2 Score=35.02 Aligned_cols=21 Identities=10% Similarity=0.131 Sum_probs=17.8
Q ss_pred EecChHHHHHHhhcCCCCCcc
Q 046151 67 IRAPNDVVWSIVRRFDQPQTY 87 (209)
Q Consensus 67 I~APa~~VW~vVrdF~~~~~w 87 (209)
++||+++||.++-+-..+..|
T Consensus 1 f~ap~e~Vw~A~Tdp~~l~~w 21 (132)
T PTZ00220 1 FYVPPEVLYNAFLDAYTLTRL 21 (132)
T ss_pred CCCCHHHHHHHHcCHHHHHHH
Confidence 589999999999987776666
No 49
>cd08906 START_STARD3-like Cholesterol-binding START domain of mammalian STARD3 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD3 (also known as metastatic lymph node 64/MLN64) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD3 has a high affinity for cholesterol. It may function in trafficking endosomal cholesterol to a cytosolic acceptor or membrane. In addition to having a cytoplasmic START cholesterol-binding domain, STARD3 also contains an N-terminal MENTAL cholesterol-binding and protein-protein interaction domain. The MENTAL domain contains transmembrane helices and anchors MLN64 to endosome membranes. The gene encoding STARD3 is overexpressed in about 25% of breast cancers.
Probab=92.00 E-value=7 Score=33.26 Aligned_cols=146 Identities=13% Similarity=0.076 Sum_probs=78.6
Q ss_pred ceeeEEeEEEecChHHHH-HHhhcCCCCCccccccceeEEccCCCCCcceEEEEEee-cCCCcc---eeeEeeceecCCC
Q 046151 58 QCSSLLAQRIRAPNDVVW-SIVRRFDQPQTYKHFIKSCSVSDNFTMAVGSTRDVNVI-SGLPAA---TSTERLDILDDDR 132 (209)
Q Consensus 58 ~~~~~v~~~I~APa~~VW-~vVrdF~~~~~w~p~V~s~e~~eGd~g~vGsvR~lt~~-~G~p~~---~~~ErLd~lDd~~ 132 (209)
++.-. ..+|++|+++++ .++.|....+.|-+.+.+|++++-.+...=-++.++.. .++|.+ .+.-|--.-+.+.
T Consensus 49 ~~fk~-~~~v~~~~~~l~~~ll~D~~~~~~W~~~~~~~~vi~~~~~~~~i~Y~v~~p~~~~pv~~RDfV~~r~~~~~~~~ 127 (209)
T cd08906 49 KTFIL-KAFMQCPAELVYQEVILQPEKMVLWNKTVSACQVLQRVDDNTLVSYDVAAGAAGGVVSPRDFVNVRRIERRRDR 127 (209)
T ss_pred cEEEE-EEEEcCCHHHHHHHHHhChhhccccCccchhhhheeeccCCcEEEEEEccccccCCCCCCceEEEEEEEecCCc
Confidence 77744 468899999998 68999999999999999999875431111112333321 112332 2222222223333
Q ss_pred C-EEEEEEeeccc-Cccce------EEEEEEEeecCCCCceEEEEEEeeecCCCCCCHH-HHHHHHHHHHHHHHHHHHHH
Q 046151 133 Q-VTGFSIIGGEH-RLRNY------RSVTSVHGFNRDGAICTVVLESYVVDVPEGNTEE-DTRLFADTVVKLNLQKLVSV 203 (209)
Q Consensus 133 ~-~~sY~iieG~~-p~~~Y------~sti~V~~~~~~g~~~T~v~~s~~~d~P~g~~~e-~a~~~i~~v~k~gL~~Lk~~ 203 (209)
. .+..++.-..+ |-++| .+-..+.+.. .+..+|.+.|....| |-|+--. ....++...--.-|.+|++.
T Consensus 128 ~i~~~~sv~~~~~P~~~~~VR~~~~~~G~~i~~~~-~~~~~t~vt~~~~~D-p~G~lP~~lvN~~~~~~~~~~~~~LR~~ 205 (209)
T cd08906 128 YVSAGISTTHSHKPPLSKYVRGENGPGGFVVLKSA-SNPSVCTFIWILNTD-LKGRLPRYLIHQSLAATMFEFASHLRQR 205 (209)
T ss_pred EEEEEEEEecCCCCCCCCeEEEeeeccEEEEEECC-CCCCceEEEEEEecC-CCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 23333322122 23333 2223444421 122247777777766 5554322 33455655666677888887
Q ss_pred Hhh
Q 046151 204 AES 206 (209)
Q Consensus 204 ~E~ 206 (209)
++.
T Consensus 206 ~~~ 208 (209)
T cd08906 206 IRD 208 (209)
T ss_pred Hhh
Confidence 764
No 50
>cd08871 START_STARD10-like Lipid-binding START domain of mammalian STARD10 and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD10 (also known as CGI-52, PTCP-like, and SDCCAG28). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD10 binds phophatidylcholine and phosphatidylethanolamine. This protein is widely expressed and is synthesized constitutively in many organs. It may function in the liver in the export of phospholipids into bile. It is concentrated in the sperm flagellum, and may play a role in energy metabolism. In the mammary gland it may participate in the enrichment of lipids in milk, and be a potential marker of differentiation. Its expression is induced in this gland during gestation and lactation. It is overe
Probab=91.72 E-value=7.4 Score=32.94 Aligned_cols=135 Identities=10% Similarity=0.009 Sum_probs=76.2
Q ss_pred EecChHHHHHHhhcCCCCCccccccceeEEccCCCCCcceEEEEEeecCCCcc---eeeEeeceecCCCCEE-EEEEe--
Q 046151 67 IRAPNDVVWSIVRRFDQPQTYKHFIKSCSVSDNFTMAVGSTRDVNVISGLPAA---TSTERLDILDDDRQVT-GFSII-- 140 (209)
Q Consensus 67 I~APa~~VW~vVrdF~~~~~w~p~V~s~e~~eGd~g~vGsvR~lt~~~G~p~~---~~~ErLd~lDd~~~~~-sY~ii-- 140 (209)
.++|++.+++++.|-..-+.|-+.+..+++++..+.. -.|-...+....|++ .+.-|...-++....+ ..++.
T Consensus 56 ~~~s~e~~~~~l~D~~~r~~Wd~~~~e~~~ie~~d~~-~~i~y~~~~~P~pvs~RDfV~~r~~~~~~~~~vi~~~sv~~~ 134 (222)
T cd08871 56 PDVPAETLYDVLHDPEYRKTWDSNMIESFDICQLNPN-NDIGYYSAKCPKPLKNRDFVNLRSWLEFGGEYIIFNHSVKHK 134 (222)
T ss_pred CCCCHHHHHHHHHChhhhhhhhhhhceeEEEEEcCCC-CEEEEEEeECCCCCCCCeEEEEEEEEeCCCEEEEEeccccCC
Confidence 3799999999999988888999999999887543211 233333333233331 1222222222222222 22221
Q ss_pred -----ecccCccceEEEEEEEeecCCCCceEEEEEEeeecCCCCCCHH-HHHHHHHHHHHHHHHHHHHHHhh
Q 046151 141 -----GGEHRLRNYRSVTSVHGFNRDGAICTVVLESYVVDVPEGNTEE-DTRLFADTVVKLNLQKLVSVAES 206 (209)
Q Consensus 141 -----eG~~p~~~Y~sti~V~~~~~~g~~~T~v~~s~~~d~P~g~~~e-~a~~~i~~v~k~gL~~Lk~~~E~ 206 (209)
.|-+++..+.+...+.|.+.+ +|.+.+....| |-|.--. -...++....-.-|++|++.+++
T Consensus 135 ~~P~~~g~VR~~~~~~g~~i~p~~~~---~t~vt~~~~~D-p~G~IP~~lvN~~~~~~~~~~l~~l~k~~~~ 202 (222)
T cd08871 135 KYPPRKGFVRAISLLTGYLIRPTGPK---GCTLTYVTQND-PKGSLPKWVVNKATTKLAPKVMKKLHKAALK 202 (222)
T ss_pred CCCCCCCeEEeEEEccEEEEEECCCC---CEEEEEEEecC-CCCCcCHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 122345556666677776432 37777766666 5554322 23455556566778888888876
No 51
>cd08877 START_2 Uncharacterized subgroup of the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domain family. Functionally uncharacterized subgroup of the START domain family. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some mammalian members of the START family (STARDs), it is known which lipids bind in this pocket; these include cholesterol (STARD1, -3, -4, and -5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2, -7, and -10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). Mammalian STARDs participate in the control of various cellular processes, including lipid trafficking between intracellular compartments, lipid metabolism, and modulation of signaling events. Mutation or altered expression of STARDs is linked to diseases such as cancer, genetic disorders, a
Probab=91.41 E-value=4.1 Score=34.32 Aligned_cols=153 Identities=12% Similarity=0.097 Sum_probs=84.6
Q ss_pred HHhhhcCCCCCCceeeEEeEEEecChHHHHHHhhcCCCCCccccccceeEEccCCCCCcceEEEEEeecCCCc-ceeeEe
Q 046151 46 VVEFHTYQLSQNQCSSLLAQRIRAPNDVVWSIVRRFDQPQTYKHFIKSCSVSDNFTMAVGSTRDVNVISGLPA-ATSTER 124 (209)
Q Consensus 46 ~~~~h~h~~~~~~~~~~v~~~I~APa~~VW~vVrdF~~~~~w~p~V~s~e~~eGd~g~vGsvR~lt~~~G~p~-~~~~Er 124 (209)
|..|-+..+...-..-.+...|++|++.+.+++.|-+..+.|.|++.+++..+..+ ..-.+-.+.+ ..|. -.-||=
T Consensus 33 i~v~~r~~~~~~~~~~k~e~~i~~~~~~~~~vl~d~~~~~~W~p~~~~~~~l~~~~-~~~~v~y~~~--~~PwPv~~RD~ 109 (215)
T cd08877 33 IRVYYKFEPDGSLLSLRMEGEIDGPLFNLLALLNEVELYKTWVPFCIRSKKVKQLG-RADKVCYLRV--DLPWPLSNREA 109 (215)
T ss_pred eEEEEEeCCCCCEEEEEEEEEecCChhHeEEEEehhhhHhhhcccceeeEEEeecC-CceEEEEEEE--eCceEecceEE
Confidence 34444444443334444456899999999999999988899999998887764431 1112222222 2443 111332
Q ss_pred e------ceecCCCCEEEEEE--eec----------ccC--------ccceEEEEEEEeecCCCCceEEEEEEeeecCCC
Q 046151 125 L------DILDDDRQVTGFSI--IGG----------EHR--------LRNYRSVTSVHGFNRDGAICTVVLESYVVDVPE 178 (209)
Q Consensus 125 L------d~lDd~~~~~sY~i--ieG----------~~p--------~~~Y~sti~V~~~~~~g~~~T~v~~s~~~d~P~ 178 (209)
+ +.+|. +..+...+ +.. .+| +..+.+...++|.+++. |.+......| |.
T Consensus 110 v~~~~~~~~~~~-~~~i~i~~~si~~~~~~~~~~~~~iP~~~~~~vR~~~~~~~~~i~p~~~~~---t~v~~~~~~D-P~ 184 (215)
T cd08877 110 VFRGFGVDRLEE-NGQIVILLKSIDDDPEFLKLTDLDIPSTSAKGVRRIIKYYGFVITPISPTK---CYLRFVANVD-PK 184 (215)
T ss_pred EEEEEEEeeecc-CCCEEEEEecCCCCcccccccCCcCCCCCCCceEEEEecceEEEEEcCCCC---eEEEEEEEcC-CC
Confidence 2 23333 33332221 110 022 23344445667754332 5554444454 55
Q ss_pred CC-C-HHHHHHHHHHHHHHHHHHHHHHHhh
Q 046151 179 GN-T-EEDTRLFADTVVKLNLQKLVSVAES 206 (209)
Q Consensus 179 g~-~-~e~a~~~i~~v~k~gL~~Lk~~~E~ 206 (209)
+. - .--...++..+....|.+|++++++
T Consensus 185 g~~IP~~liN~~~k~~~~~~~~~l~k~~~~ 214 (215)
T cd08877 185 MSLVPKSLLNFVARKFAGLLFEKIQKAAKN 214 (215)
T ss_pred cccCCHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 54 2 3344677788888899999998875
No 52
>cd08911 START_STARD7-like Lipid-binding START domain of mammalian STARD7 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD7 (also known as gestational trophoblastic tumor 1/GTT1). It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. The gene encoding STARD7 is overexpressed in choriocarcinoma. STARD7 appears to be involved in the intracellular trafficking of phosphatidycholine (PtdCho) to mitochondria. STARD7 was shown to be surface active and to interact differentially with phospholipid monolayers, it showed a preference for phosphatidylserine, cholesterol, and phosphatidylglycerol.
Probab=90.64 E-value=9.5 Score=32.23 Aligned_cols=150 Identities=13% Similarity=0.026 Sum_probs=85.8
Q ss_pred CCCceeeEEeEEEecChHHHHHHhhcCCCCCccccccceeEEccCCCCCcc-eEEEEEeecCCCcc---eeeEeeceecC
Q 046151 55 SQNQCSSLLAQRIRAPNDVVWSIVRRFDQPQTYKHFIKSCSVSDNFTMAVG-STRDVNVISGLPAA---TSTERLDILDD 130 (209)
Q Consensus 55 ~~~~~~~~v~~~I~APa~~VW~vVrdF~~~~~w~p~V~s~e~~eGd~g~vG-svR~lt~~~G~p~~---~~~ErLd~lDd 130 (209)
++-...-......++|++.|.+++.|-+.-+.|-+.+.++++++.+. ..+ -+-.+.++.--|+. .+.-|-...|+
T Consensus 42 s~~~~~k~~~~~~d~s~~~~~~~~~D~~~r~~Wd~~~~~~~~le~~~-~~~~~i~y~~~~~P~P~s~RD~V~~r~~~~~~ 120 (207)
T cd08911 42 TGLYEYKVYGSFDDVTARDFLNVQLDLEYRKKWDATAVELEVVDEDP-ETGSEIIYWEMQWPKPFANRDYVYVRRYIIDE 120 (207)
T ss_pred CCcEEEEEEEEEcCCCHHHHHHHHhCHHHHHHHHhhheeEEEEEccC-CCCCEEEEEEEECCCCCCCccEEEEEEEEEcC
Confidence 44444444443449999999999999888889999999999876531 112 12223333223332 44444445565
Q ss_pred CCCEE---EEEEe-------ecccCccceEEEEEEEeecCCCCceEEEEEEeeecCCCCCCHH-HHHHHHHHHHHHHHHH
Q 046151 131 DRQVT---GFSII-------GGEHRLRNYRSVTSVHGFNRDGAICTVVLESYVVDVPEGNTEE-DTRLFADTVVKLNLQK 199 (209)
Q Consensus 131 ~~~~~---sY~ii-------eG~~p~~~Y~sti~V~~~~~~g~~~T~v~~s~~~d~P~g~~~e-~a~~~i~~v~k~gL~~ 199 (209)
++..+ ++.+- .|-+++..|.+...+.|....+..++.+...+.. .|-|+--. ....++....-.=|++
T Consensus 121 ~~~~~~i~~~sv~hp~~P~~~g~VRv~~~~~~~~i~p~~~~~~~~~~~~~~~~~-dPgG~IP~~lvN~~~~~~~~~~l~~ 199 (207)
T cd08911 121 ENKLIVIVSKAVQHPSYPESPKKVRVEDYWSYMVIRPHKSFDEPGFEFVLTYFD-NPGVNIPSYITSWVAMSGMPDFLER 199 (207)
T ss_pred CCCEEEEEEecCCCCCCCCCCCCEEEEEeEEEEEEEeCCCCCCCCeEEEEEEEe-CCCCccCHHHHHHHHHhhccHHHHH
Confidence 55432 22222 2344677788888888763111123444444444 46665433 2345666666666778
Q ss_pred HHHHHhh
Q 046151 200 LVSVAES 206 (209)
Q Consensus 200 Lk~~~E~ 206 (209)
|++.+.+
T Consensus 200 l~~a~~~ 206 (207)
T cd08911 200 LRNAALK 206 (207)
T ss_pred HHHHHhc
Confidence 8777654
No 53
>cd08903 START_STARD5-like Lipid-binding START domain of mammalian STARD5 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD5, and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD5 is ubiquitously expressed, with highest levels in liver and kidney. STARD5 functions in the kidney within the proximal tubule cells where it is associated with the Endoplasmic Reticulum (ER), and may participate in ER-associated cholesterol transport. It binds cholesterol and 25-hydroxycholesterol. Expression of the gene encoding STARD5 is increased by ER stress, and its mRNA and protein levels are elevated in a type I diabetic mouse model of human diabetic nephropathy.
Probab=90.39 E-value=10 Score=32.13 Aligned_cols=141 Identities=10% Similarity=0.028 Sum_probs=74.9
Q ss_pred EeEEEecChHHHHHHhhcCCCC--CccccccceeEEccCCCCCcceEEEEEeec--CCCc---cee-eEeeceecCCCCE
Q 046151 63 LAQRIRAPNDVVWSIVRRFDQP--QTYKHFIKSCSVSDNFTMAVGSTRDVNVIS--GLPA---ATS-TERLDILDDDRQV 134 (209)
Q Consensus 63 v~~~I~APa~~VW~vVrdF~~~--~~w~p~V~s~e~~eGd~g~vGsvR~lt~~~--G~p~---~~~-~ErLd~lDd~~~~ 134 (209)
...+|+|++++|++++-|-.+. +.|-+.+.++++++--+....-+|. .... ++.+ ..+ .-.....++....
T Consensus 50 ~e~~i~~s~~~~~~~l~d~~~~~r~~W~~~~~~~~vle~id~~~~i~~~-~~p~~~~~~vs~RDfV~~~~~~~~~d~~i~ 128 (208)
T cd08903 50 GEGIVYATLEQVWDCLKPAAGGLRVKWDQNVKDFEVVEAISDDVSVCRT-VTPSAAMKIISPRDFVDVVLVKRYEDGTIS 128 (208)
T ss_pred EEEEecCCHHHHHHHHHhccchhhhhhhhccccEEEEEEecCCEEEEEE-ecchhcCCCcCCCceEEEEEEEecCCceEE
Confidence 4467899999999999876554 7999999999988654333333443 2110 1111 111 1222333443333
Q ss_pred EEEEEeec-cc-CccceE------EEEEEEeecCCCCceEEEEEEeeecCCCCCCHH-HHHHHHHHHHHHHHHHHHHHHh
Q 046151 135 TGFSIIGG-EH-RLRNYR------SVTSVHGFNRDGAICTVVLESYVVDVPEGNTEE-DTRLFADTVVKLNLQKLVSVAE 205 (209)
Q Consensus 135 ~sY~iieG-~~-p~~~Y~------sti~V~~~~~~g~~~T~v~~s~~~d~P~g~~~e-~a~~~i~~v~k~gL~~Lk~~~E 205 (209)
+.+..+.- .. |-++|. +...+.+.+.+ ..+|.+.+....| |-|+--. -...++......-|++|++.+.
T Consensus 129 i~~~sv~h~~~P~~~~~VR~~~~~~g~~~~~~~~~-~~~t~v~~~~~~D-pkG~iP~~lvn~~~~~~~~~~~~~Lr~~~~ 206 (208)
T cd08903 129 SNATNVEHPLCPPQAGFVRGFNHPCGCFCEPVPGE-PDKTQLVSFFQTD-LSGYLPQTVVDSFFPASMAEFYNNLTKAVK 206 (208)
T ss_pred EeEEeccCCCCCCCCCeEEEeeeccEEEEEECCCC-CCceEEEEEEEec-cCCCcCHHHHHHHhhHHHHHHHHHHHHHHh
Confidence 33333322 11 223331 23344554322 2247677766666 5555332 3345555555577888888765
Q ss_pred h
Q 046151 206 S 206 (209)
Q Consensus 206 ~ 206 (209)
+
T Consensus 207 ~ 207 (208)
T cd08903 207 A 207 (208)
T ss_pred h
Confidence 4
No 54
>COG2867 Oligoketide cyclase/lipid transport protein [Lipid metabolism]
Probab=89.51 E-value=5.1 Score=33.04 Aligned_cols=93 Identities=11% Similarity=0.131 Sum_probs=62.2
Q ss_pred EEEecChHHHHHHhhcCCCCCccccccceeEEccCCCCCcceEEEEEeecCCCcceeeEeeceecCCCCEEEEEEeeccc
Q 046151 65 QRIRAPNDVVWSIVRRFDQPQTYKHFIKSCSVSDNFTMAVGSTRDVNVISGLPAATSTERLDILDDDRQVTGFSIIGGEH 144 (209)
Q Consensus 65 ~~I~APa~~VW~vVrdF~~~~~w~p~V~s~e~~eGd~g~vGsvR~lt~~~G~p~~~~~ErLd~lDd~~~~~sY~iieG~~ 144 (209)
..|..+|++++++|.|-..-+...|....+.+.+.+ ...-+=.+++.-++--.+..=|.. +++..++|--.+++|+
T Consensus 8 ~lv~y~a~~mF~LV~dV~~YP~FlP~C~~s~v~~~~--~~~l~A~l~V~~k~i~e~F~Trv~-~~~~~~~I~~~l~~GP- 83 (146)
T COG2867 8 ALVPYSASQMFDLVNDVESYPEFLPWCSASRVLERN--ERELIAELDVGFKGIRETFTTRVT-LKPTARSIDMKLIDGP- 83 (146)
T ss_pred eeccCCHHHHHHHHHHHHhCchhccccccceEeccC--cceeEEEEEEEhhheeeeeeeeee-ecCchhhhhhhhhcCC-
Confidence 468999999999999988877888888888888776 334555555543321122222222 4555557878888885
Q ss_pred CccceEEEEEEEeecCCC
Q 046151 145 RLRNYRSVTSVHGFNRDG 162 (209)
Q Consensus 145 p~~~Y~sti~V~~~~~~g 162 (209)
++...++=+..|...++
T Consensus 84 -Fk~L~~~W~F~pl~~~~ 100 (146)
T COG2867 84 -FKYLKGGWQFTPLSEDA 100 (146)
T ss_pred -hhhhcCceEEEECCCCc
Confidence 45667777888864443
No 55
>cd08869 START_RhoGAP C-terminal lipid-binding START domain of mammalian STARD8, -12, -13 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD8 (also known as deleted in liver cancer 3/DLC3, and Arhgap38), STARD12 (also known as DLC-1, Arhgap7, and p122-RhoGAP), and STARD13 (also known as DLC-2, Arhgap37, and SDCCAG13). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subfamily also have a RhoGAP domain. Some, including STARD12, -and -13, also have an N-terminal SAM (sterile alpha motif) domain; these have a SAM-RhoGAP-START domain organization. This subfamily is involved in cancer development. A large spectrum of cancers have dysregul
Probab=85.01 E-value=22 Score=29.81 Aligned_cols=134 Identities=13% Similarity=0.013 Sum_probs=73.6
Q ss_pred eEEEecChHHHHHHhhcCCCCCccccccceeEEccCCCCCcceEEEEEeecCCCcc---eeeEeeceecCCCC--EEEEE
Q 046151 64 AQRIRAPNDVVWSIVRRFDQPQTYKHFIKSCSVSDNFTMAVGSTRDVNVISGLPAA---TSTERLDILDDDRQ--VTGFS 138 (209)
Q Consensus 64 ~~~I~APa~~VW~vVrdF~~~~~w~p~V~s~e~~eGd~g~vGsvR~lt~~~G~p~~---~~~ErLd~lDd~~~--~~sY~ 138 (209)
..+|+||+++|++.+-+. -+.|-+.+.++++++-.+...--++ ..+..-.|+. .+.-|.-..|.++. .+.++
T Consensus 49 ~~~v~a~~~~v~~~l~d~--r~~Wd~~~~~~~vie~id~~~~i~y-~~~~~p~pv~~RDfV~~r~~~~~~~~g~~~i~~~ 125 (197)
T cd08869 49 STEVEAPPEEVLQRILRE--RHLWDDDLLQWKVVETLDEDTEVYQ-YVTNSMAPHPTRDYVVLRTWRTDLPKGACVLVET 125 (197)
T ss_pred EEEeCCCHHHHHHHHHHH--HhccchhhheEEEEEEecCCcEEEE-EEeeCCCCCCCceEEEEEEEEecCCCCcEEEEEE
Confidence 357899999999988764 3789999999998754311111122 2222222331 22333333333333 32333
Q ss_pred Eee--cccC-----ccceEEEEEEEeecCCCCceEEEEEEeeecCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 046151 139 IIG--GEHR-----LRNYRSVTSVHGFNRDGAICTVVLESYVVDVPEGNTEEDTRLFADTVVKLNLQKLVSVA 204 (209)
Q Consensus 139 iie--G~~p-----~~~Y~sti~V~~~~~~g~~~T~v~~s~~~d~P~g~~~e~a~~~i~~v~k~gL~~Lk~~~ 204 (209)
=++ ..+| ...+.+...+.|.+. + +|.+..-...| |-|.--.-.......+.-..|++|+..+
T Consensus 126 Sv~~~~~~p~g~VR~~~~~~g~~i~p~~~-~--~t~vty~~~~D-p~G~iP~wl~N~~~~~~~~~~~~l~~~~ 194 (197)
T cd08869 126 SVEHTEPVPLGGVRAVVLASRYLIEPCGS-G--KSRVTHICRVD-LRGRSPEWYNKVYGHLCARELLRIRDSF 194 (197)
T ss_pred CCcCCCCCCCCCEEEEEEeeeEEEEECCC-C--CeEEEEEEEEC-CCCCCCceeecchHhHHHHHHHHHHhhc
Confidence 232 1223 233344445676542 2 37677766666 5554444345555677888889988764
No 56
>PF10698 DUF2505: Protein of unknown function (DUF2505); InterPro: IPR019639 This entry represents proteins found Actinobacteria and Proteobacteria. The function is not known.
Probab=85.00 E-value=19 Score=29.12 Aligned_cols=135 Identities=18% Similarity=0.128 Sum_probs=68.2
Q ss_pred EeEEEecChHHHHHHhhc--CCC--CCcc---ccccceeEEccCCCCCcceEEEEEe-ecCCCc-------c----eeeE
Q 046151 63 LAQRIRAPNDVVWSIVRR--FDQ--PQTY---KHFIKSCSVSDNFTMAVGSTRDVNV-ISGLPA-------A----TSTE 123 (209)
Q Consensus 63 v~~~I~APa~~VW~vVrd--F~~--~~~w---~p~V~s~e~~eGd~g~vGsvR~lt~-~~G~p~-------~----~~~E 123 (209)
++.++++|+++||+++.| |-. .+.. ...+.+++.. |+ ++-....-.+ .+.+|. + .-+|
T Consensus 3 ~~~~~~~~~~~v~~~~~d~~y~~~r~~~~g~~~~~~~~~~~~-~~--g~~v~~~~~v~~~~lP~~~~k~v~~~l~v~~~e 79 (159)
T PF10698_consen 3 HSVEYPAPVERVWAAFTDEDYWEARCAALGADNAEVESFEVD-GD--GVRVTVRQTVPADKLPSAARKFVGGDLRVTRTE 79 (159)
T ss_pred EEEEcCCCHHHHHHHHcCHHHHHHHHHHcCCCCceEEEEEEc-CC--eEEEEEEEecChhhCCHHHHHhcCCCeEEEEEE
Confidence 456899999999999885 322 1111 1123333332 22 1111111111 123342 1 1134
Q ss_pred eeceecCCCCEEEEEEeecccCccceEEEEEEEeecCCCCceEEEEEEeeecCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 046151 124 RLDILDDDRQVTGFSIIGGEHRLRNYRSVTSVHGFNRDGAICTVVLESYVVDVPEGNTEEDTRLFADTVVKLNLQKLVSV 203 (209)
Q Consensus 124 rLd~lDd~~~~~sY~iieG~~p~~~Y~sti~V~~~~~~g~~~T~v~~s~~~d~P~g~~~e~a~~~i~~v~k~gL~~Lk~~ 203 (209)
+....++..+..+|++--...|++ .++++.+.+. ++ +|.+.....+.+.-+---....+++...++..|+...+.
T Consensus 80 ~w~~~~~g~~~g~~~~~~~G~P~~-~~G~~~L~~~--~~--gt~~~~~g~v~v~VPlvGgkiE~~v~~~~~~~~~~e~~~ 154 (159)
T PF10698_consen 80 TWTPLDDGRRTGTFTVSIPGAPVS-ISGTMRLRPD--GG--GTRLTVEGEVKVKVPLVGGKIEKAVAENLRKLLEAEQEF 154 (159)
T ss_pred EEecCCCCeEEEEEEEEecCceEE-EEEEEEEecC--CC--CEEEEEEEEEEEEEccccHHHHHHHHHHHHHHHHHHHHH
Confidence 444457888888888754444554 6788888872 22 355544444443222222234445555666666665555
Q ss_pred Hh
Q 046151 204 AE 205 (209)
Q Consensus 204 ~E 205 (209)
..
T Consensus 155 ~~ 156 (159)
T PF10698_consen 155 TA 156 (159)
T ss_pred HH
Confidence 43
No 57
>cd08913 START_STARD14-like Lipid-binding START domain of mammalian STARDT14 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian brown fat-inducible STARD14 (also known as Acyl-Coenzyme A Thioesterase 11 or ACOT11, BFIT, THEA, THEM1, KIAA0707, and MGC25974) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD14/ACOT11 is a type II acetyl-CoA thioesterase; it catalyzes the hydrolysis of acyl-CoAs to free fatty acid and CoASH. Human STARD14 displays acetyl-CoA thioesterase activity towards medium(C12)- and long(C16)-chain fatty acyl-CoA substrates. In addition to having a START domain, most proteins in this subgroup have two tandem copies of the hotdog domain. There are two splice variants of
Probab=83.33 E-value=29 Score=30.52 Aligned_cols=55 Identities=5% Similarity=0.124 Sum_probs=41.1
Q ss_pred CCCceeeEEeEEEecChHHHHHHhhcCCCCCccccccceeEEccCCCCCcceEEEEE
Q 046151 55 SQNQCSSLLAQRIRAPNDVVWSIVRRFDQPQTYKHFIKSCSVSDNFTMAVGSTRDVN 111 (209)
Q Consensus 55 ~~~~~~~~v~~~I~APa~~VW~vVrdF~~~~~w~p~V~s~e~~eGd~g~vGsvR~lt 111 (209)
+.-++.-.. ..|++|+++|++++.|...-+.|-+.+.+|++++-.+.... +..++
T Consensus 78 s~~~~fK~e-~~vd~s~e~v~~lL~D~~~r~~Wd~~~~e~~vIe~id~~~~-vY~v~ 132 (240)
T cd08913 78 DKFLSFKVE-MVVHVDAAQAFLLLSDLRRRPEWDKHYRSCELVQQVDEDDA-IYHVT 132 (240)
T ss_pred CCccEEEEE-EEEcCCHHHHHHHHhChhhhhhhHhhccEEEEEEecCCCcE-EEEEe
Confidence 444566444 58899999999999999999999999999998754322222 55554
No 58
>cd08870 START_STARD2_7-like Lipid-binding START domain of mammalian STARD2, -7, and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD2 (also known as phosphatidylcholine transfer protein/PC-TP), and STARD7 (also known as gestational trophoblastic tumor 1/GTT1). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD2 is a cytosolic phosphatidycholine (PtdCho) transfer protein, which traffics PtdCho, the most common class of phospholipids in eukaryotes, between membranes. It represents a minimal START domain structure. STARD2 plays roles in hepatic cholesterol metabolism, in the development of atherosclerosis, and may also have a mitochondrial function. The gene encoding STARD7 is overexpressed in choriocarcinoma. STARD7 appears to be invo
Probab=83.18 E-value=26 Score=29.40 Aligned_cols=147 Identities=12% Similarity=0.063 Sum_probs=80.1
Q ss_pred CCCceeeEEeEEE-ecChHHHHHHhhcCCCCCccccccceeEEccCCCC-CcceEEEEEeecCCCc---ceeeEeeceec
Q 046151 55 SQNQCSSLLAQRI-RAPNDVVWSIVRRFDQPQTYKHFIKSCSVSDNFTM-AVGSTRDVNVISGLPA---ATSTERLDILD 129 (209)
Q Consensus 55 ~~~~~~~~v~~~I-~APa~~VW~vVrdF~~~~~w~p~V~s~e~~eGd~g-~vGsvR~lt~~~G~p~---~~~~ErLd~lD 129 (209)
+..+-.-.+. ++ ++|++.|.+++.|-..-+.|-+.+.++++++-+.. +.-.++ +.++.--|. ..+.-|-...|
T Consensus 47 s~~~~~k~~~-~~~~~s~~~~~~~l~D~~~r~~Wd~~~~~~~~le~~~~~~~~i~y-~~~~~P~P~s~RD~V~~r~~~~~ 124 (209)
T cd08870 47 TGLYEYLVRG-VFEDCTPELLRDFYWDDEYRKKWDETVIEHETLEEDEKSGTEIVR-WVKKFPFPLSDREYVIARRLWES 124 (209)
T ss_pred CCceEEEEEE-EEcCCCHHHHHHHHcChhhHhhhhhheeeEEEEEecCCCCcEEEE-EEEECCCcCCCceEEEEEEEEEc
Confidence 3334444443 45 77999999999998888899999999988755421 122222 222212223 12322322233
Q ss_pred -CCCCEEEEEEee-------cccCccceEEEEEEEeecCCCCceEEEEEEeeecCCCCCC-HHHHHHHHHHHHHHHHHHH
Q 046151 130 -DDRQVTGFSIIG-------GEHRLRNYRSVTSVHGFNRDGAICTVVLESYVVDVPEGNT-EEDTRLFADTVVKLNLQKL 200 (209)
Q Consensus 130 -d~~~~~sY~iie-------G~~p~~~Y~sti~V~~~~~~g~~~T~v~~s~~~d~P~g~~-~e~a~~~i~~v~k~gL~~L 200 (209)
+..+.+..+-+. |-.++..|.+...+.|.. .+..+|-+.-.+..| |.|.- .-.+..++....-.-|++|
T Consensus 125 ~~~~~~i~~~sv~~~~~P~~~~vRv~~~~~~~~i~p~~-~~~~~t~~~~~~~~d-p~G~IP~wlvN~~~~~~~~~~l~~l 202 (209)
T cd08870 125 DDRSYVCVTKGVPYPSVPRSGRKRVDDYESSLVIRAVK-GDGQGSACEVTYFHN-PDGGIPRELAKLAVKRGMPGFLKKL 202 (209)
T ss_pred CCCEEEEEEeCCcCCCCCCCCcEEEEEEEeEEEEEEec-CCCCceEEEEEEEEC-CCCCCCHHHHHHHHHhhhHHHHHHH
Confidence 333333222221 444677888888888763 111235555555555 55543 2333455555555566777
Q ss_pred HHHHh
Q 046151 201 VSVAE 205 (209)
Q Consensus 201 k~~~E 205 (209)
++.+.
T Consensus 203 ~~a~~ 207 (209)
T cd08870 203 ENALR 207 (209)
T ss_pred HHHHh
Confidence 76653
No 59
>cd08873 START_STARD14_15-like Lipid-binding START domain of mammalian STARDT14, -15, and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian brown fat-inducible STARD14 (also known as Acyl-Coenzyme A Thioesterase 11 or ACOT11, BFIT, THEA, THEM1, KIAA0707, and MGC25974), STARD15/ACOT12 (also known as cytoplasmic acetyl-CoA hydrolase/CACH, THEAL, and MGC105114), and related domains. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD14/ACOT11 and STARD15/ACOT12 are type II acetyl-CoA thioesterases; they catalyze the hydrolysis of acyl-CoAs to free fatty acid and CoASH. Human STARD14 displays acetyl-CoA thioesterase activity towards medium(C12)- and long(C16)-chain fatty acyl-CoA substrates. Rat CACH hydrolyzes acetyl-CoA to acetate an
Probab=82.47 E-value=27 Score=30.77 Aligned_cols=51 Identities=6% Similarity=0.029 Sum_probs=38.7
Q ss_pred CceeeEEeEEEecChHHHHHHhhcCCCCCccccccceeEEccCCCCCcceEE
Q 046151 57 NQCSSLLAQRIRAPNDVVWSIVRRFDQPQTYKHFIKSCSVSDNFTMAVGSTR 108 (209)
Q Consensus 57 ~~~~~~v~~~I~APa~~VW~vVrdF~~~~~w~p~V~s~e~~eGd~g~vGsvR 108 (209)
.++...+ ..|++|+++||+++.|...-+.|-+.+.+|++++..+...+-++
T Consensus 76 ~l~fk~e-~~vd~s~~~v~dlL~D~~~R~~WD~~~~e~evI~~id~d~~iyy 126 (235)
T cd08873 76 VLSFCVE-LKVQTCASDAFDLLSDPFKRPEWDPHGRSCEEVKRVGEDDGIYH 126 (235)
T ss_pred ceEEEEE-EEecCCHHHHHHHHhCcchhhhhhhcccEEEEEEEeCCCcEEEE
Confidence 3444444 46999999999999999999999999999999863322444444
No 60
>cd00177 START Lipid-binding START domain of mammalian STARD1-STARD15 and related proteins. This family includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, and related domains, such as the START domain of the Arabidopsis homeobox protein GLABRA 2. The mammalian STARDs are grouped into 8 subfamilies. This family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some members of this family, specific lipids that bind in this pocket are known; these include cholesterol (STARD1/STARD3/ STARD4/STARD5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2/ STARD7/STARD10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). The START domain is found either alone or in association with other domains. Mammalian STARDs participate in the control of various cellular pro
Probab=82.07 E-value=23 Score=27.93 Aligned_cols=53 Identities=11% Similarity=0.141 Sum_probs=40.0
Q ss_pred eEEEecChHHHHHHhhcCCCCCccccccceeEEccCCCCCcceEEEEEeecCCC
Q 046151 64 AQRIRAPNDVVWSIVRRFDQPQTYKHFIKSCSVSDNFTMAVGSTRDVNVISGLP 117 (209)
Q Consensus 64 ~~~I~APa~~VW~vVrdF~~~~~w~p~V~s~e~~eGd~g~vGsvR~lt~~~G~p 117 (209)
..+|++|+++||+++.+....+.|-+.+.++++.+-.... -.+....+....|
T Consensus 44 ~~~i~~~~~~v~~~l~d~~~~~~w~~~~~~~~vl~~~~~~-~~i~~~~~~~p~p 96 (193)
T cd00177 44 EGVIPASPEQVFELLMDIDLRKKWDKNFEEFEVIEEIDEH-TDIIYYKTKPPWP 96 (193)
T ss_pred EEEECCCHHHHHHHHhCCchhhchhhcceEEEEEEEeCCC-eEEEEEEeeCCCc
Confidence 4579999999999999988888999999999988654222 3444555554444
No 61
>smart00234 START in StAR and phosphatidylcholine transfer protein. putative lipid-binding domain in StAR and phosphatidylcholine transfer protein
Probab=72.08 E-value=52 Score=26.79 Aligned_cols=146 Identities=10% Similarity=-0.040 Sum_probs=78.5
Q ss_pred CCCceeeEEeEEEecChHHHH-HHhhcCCCCCccccccceeEEccCCCCCcceEEEEEeecCC-Ccc---ee-eEeecee
Q 046151 55 SQNQCSSLLAQRIRAPNDVVW-SIVRRFDQPQTYKHFIKSCSVSDNFTMAVGSTRDVNVISGL-PAA---TS-TERLDIL 128 (209)
Q Consensus 55 ~~~~~~~~v~~~I~APa~~VW-~vVrdF~~~~~w~p~V~s~e~~eGd~g~vGsvR~lt~~~G~-p~~---~~-~ErLd~l 128 (209)
++.++.-.. ..|.++++++. .++.|...-+.|.+.+.++++++-.+.+ ..|.......-. |.. .+ .-+....
T Consensus 42 ~~~~~~k~~-~~v~~~~~~~~~~~~~d~~~r~~Wd~~~~~~~~ie~~~~~-~~i~~~~~~~~~~p~~~RDfv~~r~~~~~ 119 (206)
T smart00234 42 SPGEASRAV-GVVPMVCADLVEELMDDLRYRPEWDKNVAKAETLEVIDNG-TVIYHYVSKFVAGPVSPRDFVFVRYWREL 119 (206)
T ss_pred CceEEEEEE-EEEecChHHHHHHHHhcccchhhCchhcccEEEEEEECCC-CeEEEEEEecccCcCCCCeEEEEEEEEEc
Confidence 344455444 57888998744 5777888888999999999987543212 355555443332 432 11 1122222
Q ss_pred cCCCCEEEEEEee--------cccCccceEEEEEEEeecCCCCceEEEEEEeeecCCCCCC-HHHHHHHHHHHHHHHHHH
Q 046151 129 DDDRQVTGFSIIG--------GEHRLRNYRSVTSVHGFNRDGAICTVVLESYVVDVPEGNT-EEDTRLFADTVVKLNLQK 199 (209)
Q Consensus 129 Dd~~~~~sY~iie--------G~~p~~~Y~sti~V~~~~~~g~~~T~v~~s~~~d~P~g~~-~e~a~~~i~~v~k~gL~~ 199 (209)
++....+..+-++ |-++...+.+...+.|.+++ .|.+.+-...| |-|.- .-....++....-..+..
T Consensus 120 ~~~~~vi~~~Sv~~~~~p~~~~~VR~~~~~~~~~i~p~~~~---~t~vt~~~~~D-~~G~iP~~lvn~~~~~~~~~~~~~ 195 (206)
T smart00234 120 VDGSYAVVDVSVTHPTSPPTSGYVRAENLPSGLLIEPLGNG---PSKVTWVSHAD-LKGWLPHWLVRSLIKSGLAEFAKT 195 (206)
T ss_pred CCCcEEEEEEECCCCCCCCCCCceEEEEeceEEEEEECCCC---CeEEEEEEEEe-cCCCccceeehhhhhhhHHHHHHH
Confidence 3334444443332 22245566677777876433 26777777766 33332 112234444444455555
Q ss_pred HHHHHhh
Q 046151 200 LVSVAES 206 (209)
Q Consensus 200 Lk~~~E~ 206 (209)
|++.+.+
T Consensus 196 ~~~~~~~ 202 (206)
T smart00234 196 WVATLQK 202 (206)
T ss_pred HHHHHHH
Confidence 5555543
No 62
>cd08867 START_STARD4_5_6-like Lipid-binding START domain of mammalian STARD4, -5, -6, and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD4, -5, and -6. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD4 plays an important role in steroidogenesis, trafficking cholesterol into mitochondria. It specifically binds cholesterol, and demonstrates limited binding to another sterol, 7a-hydroxycholesterol. STARD4 and STARD5 are ubiquitously expressed, with highest levels in liver and kidney. STRAD5 functions in the kidney within the proximal tubule cells where it is associated with the Endoplasmic Reticulum (ER), and may participate in ER-associated cholesterol transport. It binds cholesterol and 25-hydroxycholesterol. Expression
Probab=70.75 E-value=61 Score=26.97 Aligned_cols=39 Identities=10% Similarity=0.052 Sum_probs=32.9
Q ss_pred EEeEEEecChHHHHHHhhc--CCCCCccccccceeEEccCC
Q 046151 62 LLAQRIRAPNDVVWSIVRR--FDQPQTYKHFIKSCSVSDNF 100 (209)
Q Consensus 62 ~v~~~I~APa~~VW~vVrd--F~~~~~w~p~V~s~e~~eGd 100 (209)
....+|+|++++|..++.+ ...-+.|-+.+..|++.+..
T Consensus 49 k~~~~i~~~~~~v~~~l~d~~~~~r~~Wd~~~~~~~~le~i 89 (206)
T cd08867 49 RAEGIVDALPEKVIDVIIPPCGGLRLKWDKSLKHYEVLEKI 89 (206)
T ss_pred EEEEEEcCCHHHHHHHHHhcCccccccccccccceEEEEEe
Confidence 3345789999999999998 67778999999999998654
No 63
>PF05586 Ant_C: Anthrax receptor C-terminus region; InterPro: IPR008399 Anthrax is an acute disease in humans and animals caused by the bacterium Bacillus anthracis, which can be lethal. There are effective vaccines against anthrax, and some forms of the disease respond well to antibiotic treatment. The anthrax bacillus is one of only a few that can form long-lived spores. The anthrax toxin consists of the proteins protective antigen (PA) lethal factor (LF) and oedema factor (EF). The first step of toxin entry into host cells is the recognition by PA of a receptor on the surface of the target cell. The subsequent cleavage of receptor-bound PA enables EF and LF to bind and form a heptameric PA63 pre-pore, which triggers endocytosis. PA has been shown to bind to two cellular receptors: anthrax toxin receptor/tumour endothelial marker 8 and capillary morphogenesis protein 2 (CMG2), which are closely related host cell receptors. Both bind to PA with high affinity and are capable of mediating toxicity [, ], and both are type 1 membrane proteins that include an approximately 200-aa extracellular von Willebrand factor A (VWA) domain with a metal ion-dependent adhesion site (MIDAS) motif []. This region is found in the putatively cytoplasmic C terminus of the anthrax receptor.; GO: 0004872 receptor activity, 0016021 integral to membrane
Probab=68.29 E-value=1.7 Score=33.12 Aligned_cols=47 Identities=21% Similarity=0.427 Sum_probs=34.1
Q ss_pred CChhhhhhh--HHHHHhhhcCCCCCCceeeEEeEEEecChHHHHHHhhc-CCCC
Q 046151 34 VTQDEFDEL--KQSVVEFHTYQLSQNQCSSLLAQRIRAPNDVVWSIVRR-FDQP 84 (209)
Q Consensus 34 ~~~~~~~~~--~~~~~~~h~h~~~~~~~~~~v~~~I~APa~~VW~vVrd-F~~~ 84 (209)
|.++|++.. ++-.+..|+|.|.+++.++- |+--.|.+|+++|+ ++..
T Consensus 25 mpeee~E~~~~~~~~~~~~~~~~~~~kWYtP----IKGrlDALwaLlRr~YDrV 74 (95)
T PF05586_consen 25 MPEEEFEPPMIRPPPKPPPTHKPPQRKWYTP----IKGRLDALWALLRRQYDRV 74 (95)
T ss_pred CCcccccCccCCCCCCCCCCCCCCCCcCccC----ccchHHHHHHHHHhcccee
Confidence 334444433 34445578888889999988 78899999999996 6654
No 64
>cd08908 START_STARD12-like C-terminal lipid-binding START domain of mammalian STARD12 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD12 (also known as DLC-1, Arhgap7, and p122-RhoGAP) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subgroup also have an N-terminal SAM (sterile alpha motif) domain and a RhoGAP domain, and have a SAM-RhoGAP-START domain organization. The precise function of the START domain in this subgroup is unclear.
Probab=65.53 E-value=87 Score=26.83 Aligned_cols=136 Identities=8% Similarity=-0.050 Sum_probs=77.1
Q ss_pred eEEEecChHHHHHHhhcCCCCCccccccceeEEccCCCCCcceEEEEEeecCCCc---ceeeEeeceecCCCCEEEEE--
Q 046151 64 AQRIRAPNDVVWSIVRRFDQPQTYKHFIKSCSVSDNFTMAVGSTRDVNVISGLPA---ATSTERLDILDDDRQVTGFS-- 138 (209)
Q Consensus 64 ~~~I~APa~~VW~vVrdF~~~~~w~p~V~s~e~~eGd~g~vGsvR~lt~~~G~p~---~~~~ErLd~lDd~~~~~sY~-- 138 (209)
..+|+|++++|.+.+-|- .+.|-+.+..+.+++--+...--++.. +..--|. ..+.-|.-..|..+..+.-.
T Consensus 57 ~~~i~a~~~~vl~~lld~--~~~Wd~~~~e~~vIe~ld~~~~I~Yy~-~~~PwP~~~RD~V~~Rs~~~~~~~g~~~I~~~ 133 (204)
T cd08908 57 TIEVPAAPEEILKRLLKE--QHLWDVDLLDSKVIEILDSQTEIYQYV-QNSMAPHPARDYVVLRTWRTNLPKGACALLAT 133 (204)
T ss_pred EEEeCCCHHHHHHHHHhh--HHHHHHHhhheEeeEecCCCceEEEEE-ccCCCCCCCcEEEEEEEEEEeCCCCeEEEEEe
Confidence 457899999999998765 689999999998875431111111221 1111222 13333344444444443222
Q ss_pred -EeecccCccc-----eEEEEEEEeecCCCCceEEEEEEeeecCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhh
Q 046151 139 -IIGGEHRLRN-----YRSVTSVHGFNRDGAICTVVLESYVVDVPEGNTEEDTRLFADTVVKLNLQKLVSVAES 206 (209)
Q Consensus 139 -iieG~~p~~~-----Y~sti~V~~~~~~g~~~T~v~~s~~~d~P~g~~~e~a~~~i~~v~k~gL~~Lk~~~E~ 206 (209)
+.-..+|.+. +.+.-.++|.+.+ +|.+.-....| |-|.--.-.......+....|.+|+..+..
T Consensus 134 Sv~h~~~P~~~VR~~~~~~~w~i~P~g~g---~t~vtyi~~~D-PgG~iP~W~~N~~g~~~~~~~~~~r~sf~~ 203 (204)
T cd08908 134 SVDHDRAPVAGVRVNVLLSRYLIEPCGSG---KSKLTYMCRID-LRGHMPEWYTKSFGHLCAAEVVKIRDSFSN 203 (204)
T ss_pred ecCcccCCcCceEEEEEeeEEEEEECCCC---cEEEEEEEEeC-CCCCCcHHHHhhHHHHHHHHHHHHHhhccC
Confidence 2222234442 2233355664332 24444444454 677766777788888999999999987653
No 65
>cd08904 START_STARD6-like Lipid-binding START domain of mammalian STARD6 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD6 and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD6 is expressed in male germ cells of normal rats, and in the steroidogenic Leydig cells of perinatal hypothyroid testes. It may play a pivotal role in the steroidogenesis as well as in the spermatogenesis of normal rats. STARD6 has also been detected in the rat nervous system, and may participate in neurosteroid synthesis.
Probab=62.62 E-value=98 Score=26.42 Aligned_cols=138 Identities=7% Similarity=-0.007 Sum_probs=70.6
Q ss_pred CceeeEEeEEEecChHHHHHHhhcCCCCCccccccceeEEccCCCCCcceEEEEEeecCCC-c---ceeeEee-ceecCC
Q 046151 57 NQCSSLLAQRIRAPNDVVWSIVRRFDQPQTYKHFIKSCSVSDNFTMAVGSTRDVNVISGLP-A---ATSTERL-DILDDD 131 (209)
Q Consensus 57 ~~~~~~v~~~I~APa~~VW~vVrdF~~~~~w~p~V~s~e~~eGd~g~vGsvR~lt~~~G~p-~---~~~~ErL-d~lDd~ 131 (209)
.+..- +..+|++++++||..+.+-..-..|-+.+..+++++--+..-=-++..+..-+++ + ..+-=|. ..+++.
T Consensus 45 gkl~k-~egvi~~~~e~v~~~l~~~e~r~~Wd~~~~~~~iie~Id~~T~I~~~~~~~~~~~~vspRDfV~vr~~~r~~~~ 123 (204)
T cd08904 45 GNLYR-VEGIIPESPAKLIQFMYQPEHRIKWDKSLQVYKMLQRIDSDTFICHTITQSFAMGSISPRDFVDLVHIKRYEGN 123 (204)
T ss_pred ceEEE-EEEEecCCHHHHHHHHhccchhhhhcccccceeeEEEeCCCcEEEEEecccccCCcccCceEEEEEEEEEeCCC
Confidence 34443 3468999999999998874446799999999998854211111122222111111 1 1111111 123554
Q ss_pred CCEEEEEEee--------cccCccceEEEEEEEeecCCCCceEEEEEEeeecCCCCCCHHHHHHHHHHHHHHHHHHH
Q 046151 132 RQVTGFSIIG--------GEHRLRNYRSVTSVHGFNRDGAICTVVLESYVVDVPEGNTEEDTRLFADTVVKLNLQKL 200 (209)
Q Consensus 132 ~~~~sY~iie--------G~~p~~~Y~sti~V~~~~~~g~~~T~v~~s~~~d~P~g~~~e~a~~~i~~v~k~gL~~L 200 (209)
...+.+..++ |-++..++.+-..+.|.+++ ..+|.+.|....| |-|+- .+..++.++...|-..
T Consensus 124 ~~ii~~~sv~Hp~~Pp~~g~VRa~n~~~G~~i~pl~~~-p~~t~l~~~~~~D-lkG~l---P~~vv~~~~~~~~~~f 195 (204)
T cd08904 124 MNIVSSVSVEYPQCPPSSNYIRGYNHPCGYVCSPLPEN-PAYSKLVMFVQPE-LRGNL---SRSVIEKTMPTNLVNL 195 (204)
T ss_pred EEEEEEEecccCCCCCCCCcEEEeeeccEEEEEECCCC-CCceEEEEEEEeC-CCCCC---CHHHHHHHhHHHHHHH
Confidence 4444454443 11123344444566775433 1247778877766 45653 2334444444444433
No 66
>cd08914 START_STARD15-like Lipid-binding START domain of mammalian STARD15 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD15/ACOT12 (also known as cytoplasmic acetyl-CoA hydrolase/CACH, THEAL, and MGC105114) and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD15/ACOT12 is a type II acetyl-CoA thioesterase; it catalyzes the hydrolysis of acyl-CoAs to free fatty acid and CoASH. Rat CACH hydrolyzes acetyl-CoA to acetate and CoA. In addition to having a START domain, most proteins in this subgroup have two tandem copies of the hotdog domain. Human STARD15/ACOT12 may have roles in cholesterol metabolism and in beta-oxidation.
Probab=57.79 E-value=9 Score=33.79 Aligned_cols=55 Identities=11% Similarity=0.224 Sum_probs=40.6
Q ss_pred CCCceeeEEeEEEecChHHHHHHhhcCCCCCccccccceeEEccCCCCCcceEEEEE
Q 046151 55 SQNQCSSLLAQRIRAPNDVVWSIVRRFDQPQTYKHFIKSCSVSDNFTMAVGSTRDVN 111 (209)
Q Consensus 55 ~~~~~~~~v~~~I~APa~~VW~vVrdF~~~~~w~p~V~s~e~~eGd~g~vGsvR~lt 111 (209)
+.-++.-..+ .+++|++++.+++.|...-+.|-+.+.+|++++..+..-- |..+.
T Consensus 75 s~~l~fk~e~-~vdvs~~~l~~LL~D~~~r~~Wd~~~~e~~vI~qld~~~~-vY~~~ 129 (236)
T cd08914 75 HDVLSVWVEK-HVKRPAHLAYRLLSDFTKRPLWDPHFLSCEVIDWVSEDDQ-IYHIT 129 (236)
T ss_pred CCcEEEEEEE-EEcCCHHHHHHHHhChhhhchhHHhhceEEEEEEeCCCcC-EEEEe
Confidence 3344555544 7899999999999999999999999999998754311222 56654
No 67
>PF01852 START: START domain; InterPro: IPR002913 START (StAR-related lipid-transfer) is a lipid-binding domain in StAR, HD-ZIP and signalling proteins []. StAR (Steroidogenic Acute Regulatory protein) is a mitochondrial protein that is synthesised in response to luteinising hormone stimulation []. Expression of the protein in the absence of hormone stimulation is sufficient to induce steroid production, suggesting that this protein is required in the acute regulation of steroidogenesis. Representatives of the START domain family have been shown to bind different ligands such as sterols (StAR protein) and phosphatidylcholine (PC-TP). Ligand binding by the START domain can also regulate the activities of other domains that co-occur with the START domain in multidomain proteins such as Rho-gap, the homeodomain, and the thioesterase domain [, ]. The crystal structure of START domain of human MLN64 shows an alpha/beta fold built around an U-shaped incomplete beta-barrel. Most importantly, the interior of the protein encompasses a 26 x 12 x 11 Angstroms hydrophobic tunnel that is apparently large enough to bind a single cholesterol molecule []. The START domain structure revealed an unexpected similarity to that of the birch pollen allergen Bet v 1 and to bacterial polyketide cyclases/aromatases [, ]. ; PDB: 1JSS_B 2R55_B 1LN3_B 1LN1_A 1LN2_B 3FO5_A 2Z9Y_A 2E3R_A 3H3Q_B 2E3P_B ....
Probab=45.45 E-value=1.6e+02 Score=23.74 Aligned_cols=143 Identities=13% Similarity=0.006 Sum_probs=81.6
Q ss_pred CCceeeEEeEEEecChHHHHHHhhcCCCCCccccccceeEEccCCCCCcceEEEEEeecCC--CcceeeE-----eecee
Q 046151 56 QNQCSSLLAQRIRAPNDVVWSIVRRFDQPQTYKHFIKSCSVSDNFTMAVGSTRDVNVISGL--PAATSTE-----RLDIL 128 (209)
Q Consensus 56 ~~~~~~~v~~~I~APa~~VW~vVrdF~~~~~w~p~V~s~e~~eGd~g~vGsvR~lt~~~G~--p~~~~~E-----rLd~l 128 (209)
+..+...+ ..|+++++++...+.+-.. .|-+.+.++++++-.+ .-..|....+.... |..- || +....
T Consensus 44 ~~~~~k~~-~~v~~~~~~~~~~~~~~~~--~Wd~~~~~~~~le~~~-~~~~i~~~~~~~~~~~p~~~-RDfv~~~~~~~~ 118 (206)
T PF01852_consen 44 PIKMFKAE-GVVPASPEQVVEDLLDDRE--QWDKMCVEAEVLEQID-EDTDIVYFVMKSPWPGPVSP-RDFVFLRSWRKD 118 (206)
T ss_dssp SCEEEEEE-EEESSCHHHHHHHHHCGGG--HHSTTEEEEEEEEEEE-TTEEEEEEEEE-CTTTTSSE-EEEEEEEEEEEC
T ss_pred cceEEEEE-EEEcCChHHHHHHHHhhHh--hcccchhhheeeeecC-CCCeEEEEEecccCCCCCCC-cEEEEEEEEEEe
Confidence 34444443 5789999977776654222 8999999999886531 11456665555544 5531 22 22223
Q ss_pred cCCCCEEEEEEee-c--------ccCccceEEEEEEEeecCCCCceEEEEEEeeecCCCCCCHH-HHHHHHHHHHHHHHH
Q 046151 129 DDDRQVTGFSIIG-G--------EHRLRNYRSVTSVHGFNRDGAICTVVLESYVVDVPEGNTEE-DTRLFADTVVKLNLQ 198 (209)
Q Consensus 129 Dd~~~~~sY~iie-G--------~~p~~~Y~sti~V~~~~~~g~~~T~v~~s~~~d~P~g~~~e-~a~~~i~~v~k~gL~ 198 (209)
.+....+.++=++ . -.+...|.+...+.|.+++. |.+..-...| |-|.--. .+..++....-.-++
T Consensus 119 ~~~~~~i~~~Si~~~~~~~~~~~~VR~~~~~s~~~i~~~~~~~---~~vt~~~~~D-~~G~iP~~~~n~~~~~~~~~~~~ 194 (206)
T PF01852_consen 119 EDGTYVIVSRSIDHPQYPPNSKGYVRAEILISGWVIRPLGDGR---TRVTYVSQVD-PKGWIPSWLVNMVVKSQPPNFLK 194 (206)
T ss_dssp TTSEEEEEEEEEEBTTSSTT-TTSEEEEEESEEEEEEEETTCE---EEEEEEEEEE-SSSSSHHHHHHHHHHHHHHHHHH
T ss_pred ccceEEEEEeeeccccccccccCcceeeeeeEeEEEEEccCCC---ceEEEEEEEC-CCCCChHHHHHHHHHHhHHHHHH
Confidence 4444444443222 1 22345566667788875432 6666666666 5665543 335566666666777
Q ss_pred HHHHHHhhc
Q 046151 199 KLVSVAESQ 207 (209)
Q Consensus 199 ~Lk~~~E~~ 207 (209)
+|.+.++++
T Consensus 195 ~~~~~~~~~ 203 (206)
T PF01852_consen 195 NLRKALKKQ 203 (206)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHHHh
Confidence 777777664
No 68
>KOG2936 consensus Uncharacterized conserved protein [Function unknown]
Probab=42.65 E-value=2e+02 Score=26.50 Aligned_cols=119 Identities=16% Similarity=0.160 Sum_probs=68.5
Q ss_pred eeeEEeEEEecChHHHHHHhhcCCCCCccccccceeEEccCCCCCcceEEEEEeecCCCcceeeEeeceecCCCC-EEEE
Q 046151 59 CSSLLAQRIRAPNDVVWSIVRRFDQPQTYKHFIKSCSVSDNFTMAVGSTRDVNVISGLPAATSTERLDILDDDRQ-VTGF 137 (209)
Q Consensus 59 ~~~~v~~~I~APa~~VW~vVrdF~~~~~w~p~V~s~e~~eGd~g~vGsvR~lt~~~G~p~~~~~ErLd~lDd~~~-~~sY 137 (209)
|+=++..++++|++.+.+++-+-.-.++|-. |....+.+. -|. +.+-+| .++=++..+-..++ .+.+
T Consensus 173 ~di~l~~tfn~~~~eLy~~fld~~rv~~wt~---S~a~l~~~~--~g~---f~lf~G----nVtg~~~~~e~~K~Iv~kW 240 (301)
T KOG2936|consen 173 ADISLSATFNCRVDELYEIFLDPERVKAWTR---SPAELEADP--GGK---FSLFDG----NVTGEFLELEKNKKIVMKW 240 (301)
T ss_pred ccceehhhcCCCHHHHHHHHhcHHHHHHhcC---ChhhcccCC--CCc---eEEecc----cceeeeeeecCCCeEEEEE
Confidence 8888899999999999999998777888864 222223321 132 333345 34444554544444 4577
Q ss_pred EEeecccCccceEEEEEEEeecCCCCceEEEEEEeeecCCCCCCHHHHHHHHHHHHHHH
Q 046151 138 SIIGGEHRLRNYRSVTSVHGFNRDGAICTVVLESYVVDVPEGNTEEDTRLFADTVVKLN 196 (209)
Q Consensus 138 ~iieG~~p~~~Y~sti~V~~~~~~g~~~T~v~~s~~~d~P~g~~~e~a~~~i~~v~k~g 196 (209)
|+-. -|- ...|||+++....++ .| .+.--.-++|.++ ++.++.-.+.+|=..
T Consensus 241 rl~~--Wp~-~~~atI~~~f~~~~~--~t-~l~~~~kgVP~~e-ee~~~~~wq~yyf~~ 292 (301)
T KOG2936|consen 241 RLKS--WPD-GHDATITLTFYESQG--ET-KLQVKQKGVPIGE-EENTRQGWQEYYFEP 292 (301)
T ss_pred eccc--CCC-CccceEEEEEecCCC--ce-EEEEEecCCCcch-hHHHHhhHHHHhhhH
Confidence 7643 222 235788877665443 24 2222233567775 445665555555333
No 69
>cd08910 START_STARD2-like Lipid-binding START domain of mammalian STARD2 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD2 (also known as phosphatidylcholine transfer protein/PC-TP) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD2 is a cytosolic phosphatidycholine (PtdCho) transfer protein, which traffics PtdCho, the most common class of phospholipids in eukaryotes, between membranes. It represents a minimal START domain structure. STARD2 plays roles in hepatic cholesterol metabolism, in the development of atherosclerosis, and may have a mitochondrial function.
Probab=31.79 E-value=3.1e+02 Score=23.02 Aligned_cols=134 Identities=11% Similarity=0.110 Sum_probs=72.4
Q ss_pred EEEe-cChHHHHHHhhcCCCCCccccccceeEEccCCCCCcceEEEEEeecCCCcc---ee-eEeeceecCCCCEEEE--
Q 046151 65 QRIR-APNDVVWSIVRRFDQPQTYKHFIKSCSVSDNFTMAVGSTRDVNVISGLPAA---TS-TERLDILDDDRQVTGF-- 137 (209)
Q Consensus 65 ~~I~-APa~~VW~vVrdF~~~~~w~p~V~s~e~~eGd~g~vGsvR~lt~~~G~p~~---~~-~ErLd~lDd~~~~~sY-- 137 (209)
.+++ ++++.+..++.|-..-+.|.+.+.++.-...+ +. -|-.+.++.--|++ .+ .-+...+|.++..+..
T Consensus 55 ~~~~~~s~~~~~~~l~D~~~r~~Wd~~~~~~~~~~~~-~~--~i~y~~~k~PwPvs~RD~V~~r~~~~~~~~~~~~~iv~ 131 (207)
T cd08910 55 GVLEDCSPSLLADVYMDLEYRKQWDQYVKELYEKECD-GE--TVIYWEVKYPFPLSNRDYVYIRQRRDLDVEGRKIWVIL 131 (207)
T ss_pred EEEcCCCHHHHHHHHhCHHHHHHHHHHHHhheeecCC-CC--EEEEEEEEcCCCCCCceEEEEEEeccccCCCCeEEEEE
Confidence 3566 79999999999988888899988774322222 11 12223332222221 22 2122344544432111
Q ss_pred -EEe--------ecccCccceEEEEEEEeecCCCCceEEEEEEeeecCCCCCCHH-HHHHHHHHHHHHHHHHHHHHHh
Q 046151 138 -SII--------GGEHRLRNYRSVTSVHGFNRDGAICTVVLESYVVDVPEGNTEE-DTRLFADTVVKLNLQKLVSVAE 205 (209)
Q Consensus 138 -~ii--------eG~~p~~~Y~sti~V~~~~~~g~~~T~v~~s~~~d~P~g~~~e-~a~~~i~~v~k~gL~~Lk~~~E 205 (209)
+.+ .|-+++..|.+...++|.+.+ +|.+.-.+..| |-|+--. ....+.....-.-|++|++.+.
T Consensus 132 ~~s~~~p~~P~~~~~VRv~~~~~~~~i~p~~~~---~t~i~~~~~~D-PgG~IP~wlvN~~~~~~~~~~l~~l~ka~~ 205 (207)
T cd08910 132 ARSTSLPQLPEKPGVIRVKQYKQSLAIESDGKK---GSKVFMYYFDN-PGGMIPSWLINWAAKNGVPNFLKDMQKACQ 205 (207)
T ss_pred ecCCCCCCCCCCCCCEEEEEEEEEEEEEeCCCC---ceEEEEEEEeC-CCCcchHHHHHHHHHHhhHHHHHHHHHHHh
Confidence 111 244467778888777765433 35455445544 5564333 2345555556666777777664
No 70
>cd08902 START_STARD4-like Lipid-binding START domain of mammalian STARD4 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD4 and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD4 plays an important role in steroidogenesis, trafficking cholesterol into mitochondria. It specifically binds cholesterol, and demonstrates limited binding to another sterol, 7alpha-hydroxycholesterol. STARD4 is ubiquitously expressed, with highest levels in liver and kidney.
Probab=31.04 E-value=3.5e+02 Score=23.42 Aligned_cols=141 Identities=14% Similarity=0.028 Sum_probs=74.2
Q ss_pred CCceeeEEeEEEecChHHHHHHhhcCCCCCccccccceeEEccCCCCCcceEEEEEeecCCCcceeeEeec-----eecC
Q 046151 56 QNQCSSLLAQRIRAPNDVVWSIVRRFDQPQTYKHFIKSCSVSDNFTMAVGSTRDVNVISGLPAATSTERLD-----ILDD 130 (209)
Q Consensus 56 ~~~~~~~v~~~I~APa~~VW~vVrdF~~~~~w~p~V~s~e~~eGd~g~vGsvR~lt~~~G~p~~~~~ErLd-----~lDd 130 (209)
+++.+-.- ..|+.-+++||..+.+-.....|-+.|++|++++-.+...=-+|+++-+..++.-.-|+=++ .+.+
T Consensus 45 ~gkl~R~E-gvv~~~~~ev~d~v~~~~~r~~Wd~~v~~~~Iie~Id~dt~I~~yvt~~~~~~iISpRDFVdv~~~~~~~d 123 (202)
T cd08902 45 GGYLYKAQ-GVVEDVYNRIVDHIRPGPYRLDWDSLMTSMDIIEEFEENCCVMRYTTAGQLLNIISPREFVDFSYTTQYED 123 (202)
T ss_pred CCceEEEE-EEecCCHHHHHHHHhcccchhcccchhhheeHhhhhcCCcEEEEEEcccCCcCccCccceEEEEEEEEeCC
Confidence 34444443 46788899999999885546799999999999875421222225555433222211122222 1222
Q ss_pred CCCEEEEEEeeccc-----CccceEEEEEEEeecCCCCceEEEEEEeeecCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 046151 131 DRQVTGFSIIGGEH-----RLRNYRSVTSVHGFNRDGAICTVVLESYVVDVPEGNTEEDTRLFADTVVKLNLQKLVS 202 (209)
Q Consensus 131 ~~~~~sY~iieG~~-----p~~~Y~sti~V~~~~~~g~~~T~v~~s~~~d~P~g~~~e~a~~~i~~v~k~gL~~Lk~ 202 (209)
.-.+++-++.-... +..|+-.-..+.|..+ +-..|.+.|....| +-|+ -.+..++.++..++-+-..
T Consensus 124 ~~~s~gvs~~~~~~ppg~VRgen~p~g~i~~Pl~~-~p~k~~~t~~lq~D-LkG~---LPqsiIdq~~~~~~~~F~~ 195 (202)
T cd08902 124 GLLSCGVSIEYEEARPNFVRGFNHPCGWFCVPLKD-NPSHSLLTGYIQTD-LRGM---LPQSAVDTAMASTLVNFYS 195 (202)
T ss_pred CeEEEEeeecCCCCCCCeEeecccccEEEEEECCC-CCCceEEEEEEEec-CCCC---ccHHHHHHHhhHHHHHHHH
Confidence 22222223322222 2233333445666543 33457788888876 4465 2345566666555544433
No 71
>COG0231 Efp Translation elongation factor P (EF-P)/translation initiation factor 5A (eIF-5A) [Translation, ribosomal structure and biogenesis]
Probab=24.02 E-value=95 Score=24.84 Aligned_cols=45 Identities=9% Similarity=0.227 Sum_probs=32.9
Q ss_pred ccceeEEccCCCCCcceEEEEEeecCCCcceeeEeeceecCCCCEEEEEEeeccc
Q 046151 90 FIKSCSVSDNFTMAVGSTRDVNVISGLPAATSTERLDILDDDRQVTGFSIIGGEH 144 (209)
Q Consensus 90 ~V~s~e~~eGd~g~vGsvR~lt~~~G~p~~~~~ErLd~lDd~~~~~sY~iieG~~ 144 (209)
++.++.+..= .-|+++..+|+.+ |+++..+-+++.+.|.-.+|+.
T Consensus 37 a~vrvk~k~l---~tG~~~e~~f~~~-------~kve~a~ie~~~~q~lY~dg~~ 81 (131)
T COG0231 37 AFVRVKLKNL---FTGKKVEKTFKAD-------DKVEVAIVERKTAQYLYIDGDF 81 (131)
T ss_pred cEEEEEEEEc---cCCCEEEEEEcCC-------CEEEEeEEeeeeEEEEEcCCCe
Confidence 3455555422 4578888888655 8888888889999998888875
No 72
>COG4008 Predicted metal-binding transcription factor [Transcription]
Probab=23.94 E-value=79 Score=25.85 Aligned_cols=34 Identities=24% Similarity=0.386 Sum_probs=28.1
Q ss_pred CCCCChhhhhhhHHHHHhhhcCCCCCCceeeEEe
Q 046151 31 PSGVTQDEFDELKQSVVEFHTYQLSQNQCSSLLA 64 (209)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~h~h~~~~~~~~~~v~ 64 (209)
..|||++||...++...+--.-|.+.++|-.+++
T Consensus 37 ~~g~tpeefir~K~eFak~T~Lg~Ge~TCFGSLV 70 (153)
T COG4008 37 ELGLTPEEFIRIKEEFAKRTMLGYGENTCFGSLV 70 (153)
T ss_pred HhCCCHHHHHHHHHHHhhccccccCCCcccceee
Confidence 3589999999988776666677899999999873
No 73
>cd00222 CollagenBindB Collagen-binding protein B domain, mediates bacterial adherence to collagen; the primary sequence has a non-repetitive, collagen-binding A region, followed by the repetitive B region; the B region has one to four 23 kDa repeat units (B1-B4). The B repeat units have been suggested to serve as a `stalk' that projects the A region from the bacterial surface and thus facilitate bacterial adherence to collagen; each B repeat unit has two domains (D1 and D2) placed side-by-side; D1 and D2 have similar secondary structure and exhibit a unique inverse IgG-like domain fold.
Probab=23.59 E-value=1.9e+02 Score=24.58 Aligned_cols=44 Identities=11% Similarity=0.168 Sum_probs=29.1
Q ss_pred EEEEEeecCCCcceeeEeeceecCCCCEEEEEEeecccCccceEEE
Q 046151 107 TRDVNVISGLPAATSTERLDILDDDRQVTGFSIIGGEHRLRNYRSV 152 (209)
Q Consensus 107 vR~lt~~~G~p~~~~~ErLd~lDd~~~~~sY~iieG~~p~~~Y~st 152 (209)
...+++....-=...=+-|..+|.....|.|+|-|-+.| .|.+.
T Consensus 37 ~~~~~l~~~n~W~~tf~~Lpkyd~~G~~i~YtV~E~~V~--~Y~~~ 80 (187)
T cd00222 37 VKIVTVTKDNNWKYEFKDLPKYDNEGKKINYTVVEVQVP--DYETP 80 (187)
T ss_pred eeEEEecCCCCeEEEEcCCCcccCCCCEEEEEEEeecCC--CcEEE
Confidence 445555443211234477889998999999999886554 47765
No 74
>PF00028 Cadherin: Cadherin domain; InterPro: IPR002126 Cadherins are a family of adhesion molecules that mediate Ca2+-dependent cell-cell adhesion in all solid tissues of the organism which modulate a wide variety of processes including cell polarisation and migration [, ,]. Cadherin-mediated cell-cell junctions are formed as a result of interaction between extracellular domains of identical cadherins, which are located on the membranes of the neighbouring cells. The stability of these adhesive junctions is ensured by binding of the intracellular cadherin domain with the actin cytoskeleton. There are a number of different isoforms distributed in a tissue-specific manner in a wide variety of organisms. Cells containing different cadherins tend to segregate in vitro, while those that contain the same cadherins tend to preferentially aggregate together. This observation is linked to the finding that cadherin expression causes morphological changes involving the positional segregation of cells into layers, suggesting they may play an important role in the sorting of different cell types during morphogenesis, histogenesis and regeneration. They may also be involved in the regulation of tight and gap junctions, and in the control of intercellular spacing. Cadherins are evolutionary related to the desmogleins which are component of intercellular desmosome junctions involved in the interaction of plaque proteins. Structurally, cadherins comprise a number of domains: classically, these include a signal sequence; a propeptide of around 130 residues; a single transmembrane domain and five tandemly repeated extracellular cadherin domains, 4 of which are cadherin repeats, and the fifth contains 4 conserved cysteines and a N-terminal cytoplasmic domain []. However, proteins are designated as members of the broadly defined cadherin family if they have one or more cadherin repeats. A cadherin repeat is an independently folding sequence of approximately 110 amino acids that contains motifs with the conserved sequences DRE, DXNDNAPXF, and DXD. Crystal structures have revealed that multiple cadherin domains form Ca2+-dependent rod-like structures with a conserved Ca2+-binding pocket at the domain-domain interface. Cadherins depend on calcium for their function: calcium ions bind to specific residues in each cadherin repeat to ensure its proper folding, to confer rigidity upon the extracellular domain and is essential for cadherin adhesive function and for protection against protease digestion.; GO: 0005509 calcium ion binding, 0007156 homophilic cell adhesion, 0016020 membrane; PDB: 2A4E_A 2A4C_B 2O72_A 2QVI_A 1NCJ_A 3Q2W_A 3Q2N_A 3LNH_B 3LNI_A 3Q2L_A ....
Probab=22.84 E-value=1.9e+02 Score=20.25 Aligned_cols=27 Identities=30% Similarity=0.550 Sum_probs=17.3
Q ss_pred CcceeeEeeceecCC---CCEEEEEEeecc
Q 046151 117 PAATSTERLDILDDD---RQVTGFSIIGGE 143 (209)
Q Consensus 117 p~~~~~ErLd~lDd~---~~~~sY~iieG~ 143 (209)
|.+...=++.+.|.+ +..+.|+|++|+
T Consensus 10 ~~g~~v~~v~a~D~D~~~n~~i~y~i~~~~ 39 (93)
T PF00028_consen 10 PPGTVVGQVTATDPDSGPNSQITYSILGGN 39 (93)
T ss_dssp STSSEEEEEEEEESSTSTTSSEEEEEEETT
T ss_pred CCCCEEEEEEEEeCCCCCCceEEEEEecCc
Confidence 334445556666664 777888888766
No 75
>PF11248 DUF3046: Protein of unknown function (DUF3046); InterPro: IPR021408 This family of proteins with unknown function appears to be restricted to Actinobacteria.
Probab=22.08 E-value=64 Score=22.95 Aligned_cols=18 Identities=28% Similarity=0.551 Sum_probs=14.8
Q ss_pred ecChHHHHHHhhc-CCCCC
Q 046151 68 RAPNDVVWSIVRR-FDQPQ 85 (209)
Q Consensus 68 ~APa~~VW~vVrd-F~~~~ 85 (209)
-.+|..||..|++ |+-|.
T Consensus 43 G~dpr~VW~AlC~~~dVP~ 61 (63)
T PF11248_consen 43 GVDPRDVWRALCDAFDVPE 61 (63)
T ss_pred CCCHHHHHHHHHHHcCCCC
Confidence 6799999999986 77663
No 76
>PRK12426 elongation factor P; Provisional
Probab=21.07 E-value=78 Score=26.95 Aligned_cols=60 Identities=12% Similarity=0.176 Sum_probs=37.4
Q ss_pred HHHHhh-cCCCCCccccccceeEEccCCCCCcceEEEEEeecCCCcceeeEeeceecCCCCEEEEEEeeccc
Q 046151 74 VWSIVR-RFDQPQTYKHFIKSCSVSDNFTMAVGSTRDVNVISGLPAATSTERLDILDDDRQVTGFSIIGGEH 144 (209)
Q Consensus 74 VW~vVr-dF~~~~~w~p~V~s~e~~eGd~g~vGsvR~lt~~~G~p~~~~~ErLd~lDd~~~~~sY~iieG~~ 144 (209)
.|.++. +|..|.+...++ .+.+.. -.-|++-.-+|.+| |+++..+-+.+.+.|...+|+.
T Consensus 19 ~~~V~~~~h~kPGkg~A~v-r~klkn---l~tG~~~e~tf~s~-------ek~e~a~ve~~~~qylY~dg~~ 79 (185)
T PRK12426 19 LYKVVSVSKVTGPKGETFI-KVSLQA---ADSDVVVERNFKAG-------QEVKEAQFEPRNLEYLYLEGDE 79 (185)
T ss_pred EEEEEEEEEecCCCCceEE-EEEEEE---cCCCCeEEEEECCC-------CeEEEeEEEeeEeEEEEECCCe
Confidence 344444 455666665444 556652 24577777777766 6677667777777777667764
Done!