BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>046153
MSCCGRNCGRNCGCGSSCKCGSDYNVCRMYPDLSYSENPTTTIDILVLGDAYAKMNYEVS
EMGFGAEGDCKCKFYKNFFLN

High Scoring Gene Products

Symbol, full name Information P value
MT2A
AT3G09390 		protein from Arabidopsis thaliana 1.5e-05

Back to top

Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  046153
        (81 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2083519 - symbol:MT2A "metallothionein 2A" spe...   101  1.5e-05   1


>TAIR|locus:2083519 [details] [associations]
            symbol:MT2A "metallothionein 2A" species:3702
            "Arabidopsis thaliana" [GO:0046872 "metal ion binding"
            evidence=IEA] [GO:0006878 "cellular copper ion homeostasis"
            evidence=ISS] [GO:0005507 "copper ion binding" evidence=IDA]
            InterPro:IPR000347 Pfam:PF01439 EMBL:CP002686
            GenomeReviews:BA000014_GR GO:GO:0006878 GO:GO:0005507 EMBL:AC011436
            EMBL:D11394 EMBL:X62818 EMBL:U15108 EMBL:AY037263 EMBL:AY077669
            EMBL:Z26416 IPI:IPI00529178 PIR:S18069 PIR:S57861
            RefSeq:NP_187550.1 UniGene:At.24444 UniGene:At.42166
            UniGene:At.67557 STRING:P25860 PRIDE:P25860
            EnsemblPlants:AT3G09390.1 GeneID:820098 KEGG:ath:AT3G09390
            TAIR:At3g09390 eggNOG:NOG259977 HOGENOM:HOG000220916
            InParanoid:P25860 OMA:NAENDAC PhylomeDB:P25860
            ProtClustDB:CLSN2685132 Genevestigator:P25860 GermOnline:AT3G09390
            Uniprot:P25860
        Length = 81

 Score = 101 (40.6 bits), Expect = 1.5e-05, P = 1.5e-05
 Identities = 25/48 (52%), Positives = 28/48 (58%)

Query:    27 CRMYPDLSYSENPTTTIDILVLGDAYAKMN-YEVSEMGFGAEGD-CKC 72
             C+MYPDL +S   TTT +  VLG A A  N YE S     AE D CKC
Sbjct:    23 CKMYPDLGFS-GETTTTETFVLGVAPAMKNQYEASGESNNAENDACKC 69


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.322   0.139   0.437    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0       81        60   0.00091  102 3  11 22  0.37    28
                                                     29  0.37    28


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  497 (53 KB)
  Total size of DFA:  93 KB (2068 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  7.11u 0.10s 7.21t   Elapsed:  00:00:01
  Total cpu time:  7.11u 0.10s 7.21t   Elapsed:  00:00:01
  Start:  Mon May 20 16:33:25 2013   End:  Mon May 20 16:33:26 2013

Back to top