BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 046153
(81 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O24058|MT2_MALDO Metallothionein-like protein type 2 OS=Malus domestica GN=MT1
PE=3 SV=1
Length = 79
Score = 53.1 bits (126), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 30/55 (54%), Positives = 33/55 (60%), Gaps = 2/55 (3%)
Query: 18 CKCGSDYNVCRMYPDLSYSENPTTTIDILVLGDAYAKMNYEVSEMGFGAEGDCKC 72
C CGS N C M PDLSY E TT + LV+G A K + E SEMG AE CKC
Sbjct: 15 CSCGSGCNGCGMAPDLSYMEGSTT--ETLVMGVAPQKSHMEASEMGVAAENGCKC 67
>sp|Q0IMG5|MT4A_ORYSJ Metallothionein-like protein 4A OS=Oryza sativa subsp. japonica
GN=MT4A PE=2 SV=1
Length = 78
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/74 (45%), Positives = 39/74 (52%), Gaps = 13/74 (17%)
Query: 8 CGRNCGCGSSCKCGSDYNVCRMYPDLSYSENPTTTIDILVLGDAYAKMNYE----VSEMG 63
CG +C CGSSCKCGS MYPDL +E T T +VLG A AK +E +E G
Sbjct: 4 CGGSCNCGSSCKCGSGCG--NMYPDL--AEKTTNTSATMVLGVAPAKEQFEGVGKAAESG 59
Query: 64 FGAEG-----DCKC 72
A G CKC
Sbjct: 60 EAAHGCSCGSSCKC 73
>sp|Q41670|MT1B_VICFA Metallothionein-like protein 1B OS=Vicia faba GN=MT1B PE=3 SV=1
Length = 75
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/69 (43%), Positives = 39/69 (56%), Gaps = 9/69 (13%)
Query: 5 GRNCGRNCGCGSSCKCGSDYNVCRMYPDLSYSENPTTTIDILVLGDAYAKMNYEVSEMGF 64
G NCG +C CG SCKC + LSYSE T + ++LG AK+ +E +EM F
Sbjct: 3 GCNCGSSCNCGDSCKCN------KRSSGLSYSE--VETKETVILGVGPAKIQFEGAEMSF 54
Query: 65 GA-EGDCKC 72
+ EG CKC
Sbjct: 55 ASKEGGCKC 63
>sp|P43399|MT1_TRIRP Metallothionein-like protein 1 OS=Trifolium repens GN=MT1B PE=3
SV=1
Length = 75
Score = 42.7 bits (99), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 38/69 (55%), Gaps = 9/69 (13%)
Query: 5 GRNCGRNCGCGSSCKCGSDYNVCRMYPDLSYSENPTTTIDILVLGDAYAKMNYEVSEMGF 64
G NCG +C CG SCKC + L+Y E TT + ++LG AK+ +E +EMG
Sbjct: 3 GCNCGSSCNCGDSCKCN------KRSSGLNYVEAETT--ETVILGVGPAKIQFEDAEMGV 54
Query: 65 GAEGD-CKC 72
AE CKC
Sbjct: 55 AAEDSGCKC 63
>sp|P20830|MT1_PEA Metallothionein-like protein 1 OS=Pisum sativum GN=MTA PE=3 SV=1
Length = 75
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/73 (43%), Positives = 41/73 (56%), Gaps = 11/73 (15%)
Query: 1 MSCCGRNCGRNCGCGSSCKCGSDYNVCRMYPDLSYSENPTTTIDILVLGDAYAKMNYEVS 60
MS CG CG +C CG SCKC + LSYSE TT + ++LG AK+ +E +
Sbjct: 1 MSGCG--CGSSCNCGDSCKCN------KRSSGLSYSEMETT--ETVILGVGPAKIQFEGA 50
Query: 61 EMGFGAE-GDCKC 72
EM +E G CKC
Sbjct: 51 EMSAASEDGGCKC 63
>sp|Q40396|MT2_NICGU Metallothionein-like protein type 2 OS=Nicotiana glutinosa PE=3
SV=1
Length = 78
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/47 (48%), Positives = 30/47 (63%), Gaps = 4/47 (8%)
Query: 28 RMYPDLSYSENPTTTIDILVLGDAYAKMNYEVSEMG--FGAEGDCKC 72
+MYPDLSY+E +TT + LVLG + K ++ EMG AE CKC
Sbjct: 21 KMYPDLSYNE--STTTETLVLGVGHEKTSFGTMEMGESPAAENGCKC 65
>sp|P30564|MT2_RICCO Metallothionein-like protein type 2 OS=Ricinus communis GN=MTI
PE=3 SV=1
Length = 80
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/46 (50%), Positives = 28/46 (60%), Gaps = 4/46 (8%)
Query: 29 MYPDLSYSENPTTTIDILVLGDAYAKMNYEVSEMGF--GAEGDCKC 72
MYPD+S+SE TT + LVLG K ++E EMG EG CKC
Sbjct: 25 MYPDMSFSEK--TTTETLVLGVGAEKAHFEGGEMGVVGAEEGGCKC 68
>sp|Q39458|MT1_CICAR Metallothionein-like protein 1 OS=Cicer arietinum PE=3 SV=1
Length = 75
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 36/69 (52%), Gaps = 9/69 (13%)
Query: 5 GRNCGRNCGCGSSCKCGSDYNVCRMYPDLSYSENPTTTIDILVLGDAYAKMNYEVSEMGF 64
G NCG +C CG CK C LSY E TT + +VLG K+++E +EM
Sbjct: 3 GCNCGSSCNCGDQCK-------CNKRSGLSYVEAGETT-ETVVLGVGPTKIHFEGAEMSV 54
Query: 65 GAE-GDCKC 72
AE G CKC
Sbjct: 55 AAEDGGCKC 63
>sp|Q41669|MT1A_VICFA Metallothionein-like protein 1A OS=Vicia faba GN=MT1A PE=3 SV=1
Length = 77
Score = 37.7 bits (86), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 41/74 (55%), Gaps = 10/74 (13%)
Query: 1 MSCCGRNCGRNCGCGSSCKCGSDYNVCRMYPDLSYSENPTT-TIDILVLGDAYAKMNYEV 59
MS CG CG +C CG SCKC + LSYSE T T + +VLG AK++++
Sbjct: 1 MSGCG--CGSSCNCGDSCKCN------KRSSGLSYSEMETKETKETVVLGFGPAKIHFDG 52
Query: 60 SEMGFGA-EGDCKC 72
+EM + E CKC
Sbjct: 53 AEMSVASKEEGCKC 66
>sp|Q39459|MT2_CICAR Metallothionein-like protein 2 OS=Cicer arietinum PE=3 SV=2
Length = 79
Score = 34.7 bits (78), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 42/73 (57%), Positives = 49/73 (67%), Gaps = 7/73 (9%)
Query: 1 MSCCGRNCGRNCGCGSSCKCGSDYNVCRMYPDLSYSENPTTTIDILVLGDAYAKMNYEVS 60
MSCCG NCG SSCKCGS C+MYPD+SY+E TT + LV+G A K +E +
Sbjct: 1 MSCCGGNCGCG----SSCKCGSGCGGCKMYPDMSYTEQ--TTSETLVMGVASGKTQFEGA 54
Query: 61 EMGFGAEGD-CKC 72
EMGFGAE D CKC
Sbjct: 55 EMGFGAENDGCKC 67
>sp|P20238|MT1_MIMGU Metallothionein-like protein 1 OS=Mimulus guttatus PE=3 SV=1
Length = 72
Score = 33.5 bits (75), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 24/47 (51%), Gaps = 5/47 (10%)
Query: 27 CRMYPDLSYSENPTTTIDILVLGDAYAKMNYEVSEMGFGAEGDCKCK 73
C MYPD+ T T ++ G A KM E SE FGAEG CK
Sbjct: 19 CSMYPDME-----TNTTVTMIEGVAPLKMYSEGSEKSFGAEGGNGCK 60
>sp|P43390|MT2_ACTDE Metallothionein-like protein type 2 OS=Actinidia deliciosa
GN=pKIWI504 PE=2 SV=1
Length = 78
Score = 32.3 bits (72), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 39/72 (54%), Positives = 43/72 (59%), Gaps = 6/72 (8%)
Query: 1 MSCCGRNCGRNCGCGSSCKCGSDYNVCRMYPDLSYSENPTTTIDILVLGDAYAKMNYEVS 60
MSCCG CG SSC CGS C MYPDLSYSE TT + L++G A K +E S
Sbjct: 1 MSCCGGKCGCG----SSCSCGSGCGGCGMYPDLSYSE--MTTTETLIVGVAPQKTYFEGS 54
Query: 61 EMGFGAEGDCKC 72
EMG AE CKC
Sbjct: 55 EMGVAAENGCKC 66
>sp|P43400|MT1_WHEAT Metallothionein-like protein 1 OS=Triticum aestivum GN=ALI1 PE=2
SV=1
Length = 75
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 19/34 (55%), Positives = 21/34 (61%), Gaps = 9/34 (26%)
Query: 1 MSCCGRNCGRNCGCGSSCKCGSDYNVCRMYPDLS 34
MSC NCG C CGS CKCG +MYPDL+
Sbjct: 1 MSC---NCGSGCSCGSDCKCG------KMYPDLT 25
>sp|P91620|SIF2_DROME Protein still life, isoforms C/SIF type 2 OS=Drosophila
melanogaster GN=sif PE=2 SV=2
Length = 2061
Score = 30.8 bits (68), Expect = 2.7, Method: Composition-based stats.
Identities = 16/45 (35%), Positives = 21/45 (46%), Gaps = 4/45 (8%)
Query: 1 MSCCGRNCGRNCGCGSSCKCGSDYNVCRMYPDLSYSENPTTTIDI 45
+SC R C C S +C +D+N R S+ PTT DI
Sbjct: 506 LSCRNRKCLNAAKCNSLPRCAADFNRLRT----QLSQPPTTLDDI 546
>sp|Q67P19|NUOD1_SYMTH NADH-quinone oxidoreductase subunit D 1 OS=Symbiobacterium
thermophilum (strain T / IAM 14863) GN=nuoD1 PE=3 SV=1
Length = 404
Score = 30.4 bits (67), Expect = 3.4, Method: Composition-based stats.
Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Query: 21 GSDYNVCRMYPDLSYSENPTTTIDILVLGDAYAKMNYEVSEM 62
GSDY+V + YP L Y EN + + GD+++++ EM
Sbjct: 237 GSDYDVRKYYPYLGY-ENYDFKVPVYTDGDSWSRVAITFDEM 277
>sp|A9KLZ5|SYA2_CLOPH Alanine--tRNA ligase 2 OS=Clostridium phytofermentans (strain ATCC
700394 / DSM 18823 / ISDg) GN=alaS2 PE=3 SV=1
Length = 591
Score = 29.6 bits (65), Expect = 5.6, Method: Composition-based stats.
Identities = 17/44 (38%), Positives = 20/44 (45%), Gaps = 5/44 (11%)
Query: 4 CGRNCGRNCGCGSSCKCGSDYNVCRMY---PDLSYSENPTTTID 44
CG NCG C CG + + NV Y PD SY E +D
Sbjct: 184 CGVNCGPACDCGKYVEIWN--NVFMQYHKKPDGSYEEMKQKNVD 225
>sp|Q6V9H4|PDGFD_RABIT Platelet-derived growth factor D (Fragment) OS=Oryctolagus
cuniculus GN=PDGFD PE=2 SV=1
Length = 300
Score = 28.9 bits (63), Expect = 8.6, Method: Composition-based stats.
Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 4/34 (11%)
Query: 6 RNCGRNCGCGS----SCKCGSDYNVCRMYPDLSY 35
+ CG NCGCG+ SC C S V + + L +
Sbjct: 244 QRCGGNCGCGTVNWKSCTCSSGKTVKKYHEVLKF 277
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.323 0.140 0.478
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 33,675,111
Number of Sequences: 539616
Number of extensions: 1189516
Number of successful extensions: 3947
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 65
Number of HSP's successfully gapped in prelim test: 37
Number of HSP's that attempted gapping in prelim test: 3561
Number of HSP's gapped (non-prelim): 370
length of query: 81
length of database: 191,569,459
effective HSP length: 52
effective length of query: 29
effective length of database: 163,509,427
effective search space: 4741773383
effective search space used: 4741773383
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 55 (25.8 bits)