Query 046153
Match_columns 81
No_of_seqs 102 out of 206
Neff 4.1
Searched_HMMs 29240
Date Mon Mar 25 16:01:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046153.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/046153hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1qjl_A Metallothionein; metal- 94.9 0.016 5.4E-07 30.7 2.2 15 10-24 5-19 (28)
2 1qjl_A Metallothionein; metal- 94.2 0.029 9.8E-07 29.7 2.1 19 8-28 9-27 (28)
3 1t2y_A Metallothionein, MT; pr 83.3 0.59 2E-05 24.3 1.6 11 10-20 9-19 (26)
4 1m0j_A Metallothionein MT_NC; 66.2 3.5 0.00012 21.5 1.8 12 10-21 9-20 (28)
5 2kak_A EC protein I/II; metall 29.8 22 0.00074 21.0 1.3 7 18-24 35-41 (53)
6 1mrb_A CD7 metallothionein-2A; 27.9 49 0.0017 17.5 2.3 14 14-28 7-21 (31)
7 2l61_A EC protein I/II; metall 23.9 60 0.002 16.5 2.2 19 6-24 2-20 (26)
8 4mt2_A Metallothionein isoform 23.4 35 0.0012 20.6 1.4 12 10-21 12-23 (62)
9 1ji9_A Metallothionein-III; 3- 22.0 67 0.0023 17.6 2.3 14 14-28 7-21 (37)
10 2k84_A P9; HOST-virus interact 19.5 35 0.0012 17.9 0.7 6 29-34 1-6 (30)
No 1
>1qjl_A Metallothionein; metal-binding, detoxification, radical scavenger; NMR {Strongylocentrotus purpuratus} SCOP: g.46.1.1
Probab=94.94 E-value=0.016 Score=30.70 Aligned_cols=15 Identities=47% Similarity=1.274 Sum_probs=10.9
Q ss_pred CCccCCCCCCcCCCC
Q 046153 10 RNCGCGSSCKCGSDY 24 (81)
Q Consensus 10 gnCgCGs~C~CGsgC 24 (81)
.+|.||.+||||++|
T Consensus 5 ~~c~cg~~CkCgs~C 19 (28)
T 1qjl_A 5 AACKCANGCKCGSGC 19 (28)
T ss_dssp TTCCCCTTCCTTSCC
T ss_pred cccccCCCCccCCCc
Confidence 557777777777776
No 2
>1qjl_A Metallothionein; metal-binding, detoxification, radical scavenger; NMR {Strongylocentrotus purpuratus} SCOP: g.46.1.1
Probab=94.16 E-value=0.029 Score=29.67 Aligned_cols=19 Identities=42% Similarity=1.328 Sum_probs=14.6
Q ss_pred CCCCccCCCCCCcCCCCCCCC
Q 046153 8 CGRNCGCGSSCKCGSDYNVCR 28 (81)
Q Consensus 8 ~~gnCgCGs~C~CGsgC~gCk 28 (81)
|+.+|.||++|+| ++| .|+
T Consensus 9 cg~~CkCgs~C~C-~~C-~C~ 27 (28)
T 1qjl_A 9 CANGCKCGSGCSC-TEG-NCA 27 (28)
T ss_dssp CCTTCCTTSCCCC-BTT-BCC
T ss_pred cCCCCccCCCccc-CCc-ccc
Confidence 4478999999999 676 443
No 3
>1t2y_A Metallothionein, MT; protein fold, no secondary structural elements, metal binding protein; NMR {Synthetic} SCOP: g.46.1.1
Probab=83.27 E-value=0.59 Score=24.27 Aligned_cols=11 Identities=55% Similarity=1.706 Sum_probs=6.6
Q ss_pred CCccCCCCCCc
Q 046153 10 RNCGCGSSCKC 20 (81)
Q Consensus 10 gnCgCGs~C~C 20 (81)
+.|.||++|+|
T Consensus 9 gtC~Cg~~CsC 19 (26)
T 1t2y_A 9 SSCNCGSGCSC 19 (26)
T ss_dssp TTCCCSSSCCS
T ss_pred ccccCCCCccc
Confidence 55666666665
No 4
>1m0j_A Metallothionein MT_NC; cadmium thiolate-cluster, metal binding protein; NMR {Notothenia coriiceps} SCOP: g.46.1.1
Probab=66.23 E-value=3.5 Score=21.55 Aligned_cols=12 Identities=50% Similarity=1.500 Sum_probs=9.5
Q ss_pred CCccCCCCCCcC
Q 046153 10 RNCGCGSSCKCG 21 (81)
Q Consensus 10 gnCgCGs~C~CG 21 (81)
|.|.|+++|+|-
T Consensus 9 gsC~C~~sCkC~ 20 (28)
T 1m0j_A 9 GTCNCGGSCTCT 20 (28)
T ss_dssp SSCCCSSSCCSS
T ss_pred CcccCCCccccC
Confidence 678888888885
No 5
>2kak_A EC protein I/II; metallothionein, solution structure, wheat EC-1, Zn binding, metal-binding, metal-thiolate cluster, zinc; NMR {Triticum aestivum}
Probab=29.78 E-value=22 Score=20.99 Aligned_cols=7 Identities=43% Similarity=1.426 Sum_probs=4.6
Q ss_pred CCcCCCC
Q 046153 18 CKCGSDY 24 (81)
Q Consensus 18 C~CGsgC 24 (81)
|+||.+|
T Consensus 35 C~CG~~C 41 (53)
T 2kak_A 35 CSCGAAC 41 (53)
T ss_dssp CCCCSSC
T ss_pred cccCCCc
Confidence 6666666
No 6
>1mrb_A CD7 metallothionein-2A; NMR {Oryctolagus cuniculus} SCOP: g.46.1.1
Probab=27.88 E-value=49 Score=17.51 Aligned_cols=14 Identities=36% Similarity=1.296 Sum_probs=7.8
Q ss_pred CCCCC-CcCCCCCCCC
Q 046153 14 CGSSC-KCGSDYNVCR 28 (81)
Q Consensus 14 CGs~C-~CGsgC~gCk 28 (81)
|.++| +|.++| -||
T Consensus 7 CP~gC~kCa~gC-vCK 21 (31)
T 1mrb_A 7 CPPGCAKCAQGC-ICK 21 (31)
T ss_dssp SCTTCSSCSSSC-CCC
T ss_pred Cccchhhhcccc-eEc
Confidence 44455 566666 454
No 7
>2l61_A EC protein I/II; metallothionein, wheat EC-1, Zn binding, metal-thiolate CLUS metal binding protein; NMR {Triticum aestivum} PDB: 2l62_A
Probab=23.95 E-value=60 Score=16.52 Aligned_cols=19 Identities=32% Similarity=1.024 Sum_probs=15.4
Q ss_pred CCCCCCccCCCCCCcCCCC
Q 046153 6 RNCGRNCGCGSSCKCGSDY 24 (81)
Q Consensus 6 ~~~~gnCgCGs~C~CGsgC 24 (81)
..|+..|||.+-|.=|+.|
T Consensus 2 ~~cnd~cGCpvPCpGg~ac 20 (26)
T 2l61_A 2 SGCDDKCGCAVPCPGGTGC 20 (26)
T ss_dssp CCCCGGGSSCSSCSSSTTS
T ss_pred ccccCCCCCcccCCCCcce
Confidence 4678999999888877777
No 8
>4mt2_A Metallothionein isoform II; 2.00A {Rattus rattus} SCOP: g.46.1.1 PDB: 2mrt_A 1mrt_A 1mhu_A 1dfs_A 2mhu_A 1dft_A 2mrb_A
Probab=23.43 E-value=35 Score=20.64 Aligned_cols=12 Identities=50% Similarity=1.428 Sum_probs=9.1
Q ss_pred CCccCCCCCCcC
Q 046153 10 RNCGCGSSCKCG 21 (81)
Q Consensus 10 gnCgCGs~C~CG 21 (81)
|.|.|+++|+|-
T Consensus 12 gsC~C~~sCkCk 23 (62)
T 4mt2_A 12 GSCSCAGSCKCK 23 (62)
T ss_dssp SCCCCTTCSCCS
T ss_pred CcccCCCccccC
Confidence 778888887774
No 9
>1ji9_A Metallothionein-III; 3-10 helix, CD-S cluster, half turn, type II turn, metal binding protein; NMR {Mus musculus} SCOP: g.46.1.1 PDB: 2f5h_A 2fj4_A 2fj5_A
Probab=21.97 E-value=67 Score=17.55 Aligned_cols=14 Identities=50% Similarity=1.426 Sum_probs=7.7
Q ss_pred CCCCC-CcCCCCCCCC
Q 046153 14 CGSSC-KCGSDYNVCR 28 (81)
Q Consensus 14 CGs~C-~CGsgC~gCk 28 (81)
|.++| +|.++| -||
T Consensus 7 CP~gC~kCa~gC-vCK 21 (37)
T 1ji9_A 7 CPAGCEKCAKDC-VCK 21 (37)
T ss_dssp SCTTCTTTTTTC-TTC
T ss_pred CccchhHhcccc-eEc
Confidence 44445 566666 454
No 10
>2k84_A P9; HOST-virus interaction, metal-binding, virion, zinc, zinc-finger; NMR {Synthetic}
Probab=19.50 E-value=35 Score=17.92 Aligned_cols=6 Identities=83% Similarity=1.614 Sum_probs=4.8
Q ss_pred cCCCCC
Q 046153 29 MYPDLS 34 (81)
Q Consensus 29 MyPDl~ 34 (81)
.||||+
T Consensus 1 LYPDLs 6 (30)
T 2k84_A 1 LYPDLS 6 (30)
T ss_dssp CCCCSC
T ss_pred CCccHH
Confidence 499995
Done!