Query 046157
Match_columns 577
No_of_seqs 337 out of 3102
Neff 11.3
Searched_HMMs 46136
Date Fri Mar 29 09:15:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046157.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/046157hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4341 F-box protein containi 100.0 2E-35 4.4E-40 263.2 15.7 385 6-556 73-462 (483)
2 KOG4341 F-box protein containi 99.9 7.1E-26 1.5E-30 202.6 11.3 332 55-453 127-459 (483)
3 PLN00113 leucine-rich repeat r 99.9 1.7E-23 3.7E-28 229.3 20.9 467 57-556 85-581 (968)
4 KOG2120 SCF ubiquitin ligase, 99.9 9.6E-24 2.1E-28 180.4 12.7 291 6-372 99-390 (419)
5 PLN00113 leucine-rich repeat r 99.9 1.9E-22 4E-27 221.2 18.4 443 59-533 112-584 (968)
6 KOG4194 Membrane glycoprotein 99.7 3.2E-19 6.8E-24 166.9 1.5 131 368-504 292-426 (873)
7 KOG4194 Membrane glycoprotein 99.7 2.2E-19 4.8E-24 167.9 -1.4 347 143-534 78-430 (873)
8 cd00116 LRR_RI Leucine-rich re 99.7 1.6E-15 3.4E-20 145.0 20.8 269 257-555 14-316 (319)
9 cd00116 LRR_RI Leucine-rich re 99.7 9.6E-15 2.1E-19 139.6 25.8 77 174-251 10-93 (319)
10 KOG1947 Leucine rich repeat pr 99.6 1.4E-15 3.1E-20 154.6 14.3 281 203-554 178-460 (482)
11 KOG2120 SCF ubiquitin ligase, 99.6 5.3E-16 1.1E-20 133.5 8.8 253 188-450 137-391 (419)
12 PLN03210 Resistant to P. syrin 99.6 7.5E-15 1.6E-19 161.5 15.0 346 185-564 556-948 (1153)
13 PLN03210 Resistant to P. syrin 99.6 1.3E-14 2.8E-19 159.6 12.8 335 186-555 610-962 (1153)
14 KOG1947 Leucine rich repeat pr 99.6 4.3E-14 9.4E-19 143.7 15.0 255 276-565 173-446 (482)
15 KOG0444 Cytoskeletal regulator 99.5 2.5E-16 5.3E-21 149.1 -5.5 365 92-533 8-375 (1255)
16 KOG0444 Cytoskeletal regulator 99.4 1.5E-15 3.2E-20 143.9 -5.6 369 142-558 6-374 (1255)
17 KOG1909 Ran GTPase-activating 99.4 8.3E-12 1.8E-16 110.6 18.0 208 290-524 91-329 (382)
18 KOG1909 Ran GTPase-activating 99.4 7.5E-12 1.6E-16 110.9 12.8 263 259-548 23-327 (382)
19 KOG0618 Serine/threonine phosp 99.3 3.1E-13 6.7E-18 134.2 -0.1 131 392-532 357-488 (1081)
20 KOG3207 Beta-tubulin folding c 99.3 1.8E-12 3.9E-17 118.1 2.0 163 236-404 118-281 (505)
21 KOG0618 Serine/threonine phosp 99.2 8.3E-13 1.8E-17 131.3 -2.9 150 368-529 358-509 (1081)
22 KOG3207 Beta-tubulin folding c 99.2 2.9E-11 6.3E-16 110.4 5.0 214 185-405 119-337 (505)
23 PRK15387 E3 ubiquitin-protein 99.0 1.1E-09 2.3E-14 112.5 7.2 260 213-536 201-460 (788)
24 KOG3665 ZYG-1-like serine/thre 98.9 8E-09 1.7E-13 105.6 12.2 165 316-504 121-285 (699)
25 PRK15387 E3 ubiquitin-protein 98.9 1.7E-09 3.7E-14 111.0 7.1 265 187-515 201-465 (788)
26 PF12937 F-box-like: F-box-lik 98.8 2.2E-09 4.7E-14 68.4 2.1 35 6-41 2-36 (47)
27 PF14580 LRR_9: Leucine-rich r 98.8 3.6E-09 7.9E-14 88.1 3.6 129 420-554 19-148 (175)
28 KOG3665 ZYG-1-like serine/thre 98.7 7.7E-08 1.7E-12 98.6 8.8 138 412-553 140-282 (699)
29 KOG0472 Leucine-rich repeat pr 98.6 3.4E-10 7.4E-15 102.3 -7.6 107 441-555 430-537 (565)
30 PF14580 LRR_9: Leucine-rich r 98.5 4.1E-08 8.9E-13 81.9 1.3 62 468-530 87-150 (175)
31 KOG2982 Uncharacterized conser 98.5 4.3E-08 9.3E-13 85.5 1.2 193 285-505 65-260 (418)
32 KOG0472 Leucine-rich repeat pr 98.5 9.5E-09 2.1E-13 93.2 -3.0 110 387-505 428-539 (565)
33 KOG2982 Uncharacterized conser 98.5 3.9E-07 8.4E-12 79.7 6.8 61 343-403 173-233 (418)
34 COG5238 RNA1 Ran GTPase-activa 98.5 8.2E-06 1.8E-10 70.6 14.6 46 234-279 87-133 (388)
35 PRK15370 E3 ubiquitin-protein 98.4 8.2E-07 1.8E-11 92.1 9.9 246 213-504 178-425 (754)
36 COG5238 RNA1 Ran GTPase-activa 98.4 1.4E-05 3.1E-10 69.2 15.4 42 258-299 22-63 (388)
37 smart00256 FBOX A Receptor for 98.4 3.3E-07 7.1E-12 56.6 3.1 33 8-41 1-33 (41)
38 KOG4237 Extracellular matrix p 98.4 7E-08 1.5E-12 87.6 -0.1 101 436-540 264-366 (498)
39 PF00646 F-box: F-box domain; 98.4 1.2E-07 2.5E-12 61.0 0.7 37 5-42 3-39 (48)
40 PRK15370 E3 ubiquitin-protein 98.3 3.1E-06 6.8E-11 87.9 11.0 253 187-489 178-435 (754)
41 KOG3864 Uncharacterized conser 98.3 6.1E-07 1.3E-11 74.1 4.6 107 421-552 102-210 (221)
42 KOG1259 Nischarin, modulator o 98.3 4E-07 8.7E-12 79.6 3.4 240 132-405 171-410 (490)
43 KOG3864 Uncharacterized conser 98.2 1.3E-06 2.8E-11 72.2 4.4 85 470-556 102-186 (221)
44 KOG4658 Apoptotic ATPase [Sign 98.2 1.8E-06 4E-11 91.1 5.7 111 185-302 543-653 (889)
45 KOG1259 Nischarin, modulator o 98.1 1.3E-06 2.7E-11 76.6 1.6 130 391-532 281-411 (490)
46 KOG4658 Apoptotic ATPase [Sign 98.0 3.4E-06 7.4E-11 89.1 4.2 109 212-327 544-652 (889)
47 KOG4237 Extracellular matrix p 97.8 5.9E-06 1.3E-10 75.5 0.0 99 313-416 270-368 (498)
48 KOG1859 Leucine-rich repeat pr 97.4 3.1E-05 6.6E-10 76.6 -0.0 216 283-533 76-292 (1096)
49 KOG0617 Ras suppressor protein 97.4 2.4E-06 5.1E-11 68.5 -7.0 149 368-530 32-183 (264)
50 KOG2123 Uncharacterized conser 97.3 5.5E-05 1.2E-09 65.9 0.0 81 420-505 19-99 (388)
51 KOG2123 Uncharacterized conser 97.2 9.8E-05 2.1E-09 64.4 0.9 102 446-552 19-123 (388)
52 PF13855 LRR_8: Leucine rich r 97.2 0.00016 3.4E-09 49.1 1.4 12 493-504 48-59 (61)
53 KOG1859 Leucine-rich repeat pr 97.1 7.3E-05 1.6E-09 74.1 -1.5 38 235-277 183-220 (1096)
54 PF13855 LRR_8: Leucine rich r 97.1 0.00016 3.4E-09 49.1 0.5 36 493-530 24-59 (61)
55 smart00367 LRR_CC Leucine-rich 97.0 0.00094 2E-08 35.9 2.7 23 519-541 1-23 (26)
56 smart00367 LRR_CC Leucine-rich 96.8 0.0013 2.8E-08 35.3 2.6 24 493-516 1-24 (26)
57 KOG0617 Ras suppressor protein 96.8 1.4E-05 3.1E-10 64.1 -7.2 129 316-457 55-184 (264)
58 KOG1644 U2-associated snRNP A' 96.8 0.0022 4.8E-08 53.5 5.1 106 368-480 41-151 (233)
59 KOG4308 LRR-containing protein 96.8 0.00045 9.8E-09 68.2 1.3 118 145-283 89-221 (478)
60 PF12799 LRR_4: Leucine Rich r 96.5 0.0031 6.7E-08 39.0 3.1 13 492-504 22-34 (44)
61 KOG4308 LRR-containing protein 96.3 0.0032 7E-08 62.3 3.6 114 392-508 202-332 (478)
62 KOG2739 Leucine-rich acidic nu 96.3 0.0011 2.4E-08 57.8 0.2 64 489-553 86-150 (260)
63 KOG1644 U2-associated snRNP A' 96.3 0.0024 5.1E-08 53.4 2.0 105 419-530 41-150 (233)
64 PRK15386 type III secretion pr 96.0 0.0072 1.6E-07 57.6 4.2 56 290-355 51-106 (426)
65 KOG2739 Leucine-rich acidic nu 96.0 0.0013 2.9E-08 57.3 -0.6 18 179-196 83-100 (260)
66 PLN03215 ascorbic acid mannose 95.9 0.0054 1.2E-07 57.7 2.8 36 6-41 5-40 (373)
67 PLN03150 hypothetical protein; 95.9 0.021 4.6E-07 59.5 7.3 109 395-507 419-528 (623)
68 COG4886 Leucine-rich repeat (L 95.9 0.0049 1.1E-07 60.7 2.6 171 317-504 116-287 (394)
69 PRK15386 type III secretion pr 95.7 0.012 2.5E-07 56.3 4.1 138 366-530 49-187 (426)
70 PF12799 LRR_4: Leucine Rich r 95.7 0.013 2.8E-07 36.2 2.9 36 240-279 2-37 (44)
71 KOG2997 F-box protein FBX9 [Ge 95.6 0.011 2.3E-07 53.0 3.0 36 5-40 107-146 (366)
72 COG4886 Leucine-rich repeat (L 95.4 0.0079 1.7E-07 59.3 2.0 177 290-484 115-292 (394)
73 PLN03150 hypothetical protein; 95.3 0.036 7.8E-07 57.8 6.4 108 267-380 419-526 (623)
74 PF13516 LRR_6: Leucine Rich r 95.2 0.02 4.3E-07 29.9 2.3 22 469-490 2-23 (24)
75 KOG0281 Beta-TrCP (transducin 95.0 0.015 3.2E-07 52.5 2.1 38 2-40 72-113 (499)
76 KOG0531 Protein phosphatase 1, 94.1 0.015 3.3E-07 57.5 0.2 59 368-431 139-197 (414)
77 KOG0531 Protein phosphatase 1, 94.0 0.021 4.5E-07 56.5 0.9 81 419-505 117-197 (414)
78 PF13013 F-box-like_2: F-box-l 93.2 0.098 2.1E-06 39.6 3.1 30 4-34 21-50 (109)
79 smart00368 LRR_RI Leucine rich 92.5 0.23 5.1E-06 27.0 3.2 23 469-491 2-24 (28)
80 KOG4579 Leucine-rich repeat (L 92.0 0.0082 1.8E-07 46.9 -4.0 65 415-482 72-136 (177)
81 PF13516 LRR_6: Leucine Rich r 91.6 0.19 4.1E-06 26.1 2.2 23 142-183 1-23 (24)
82 KOG4579 Leucine-rich repeat (L 90.6 0.13 2.8E-06 40.5 1.2 103 421-529 28-132 (177)
83 KOG3763 mRNA export factor TAP 89.8 0.61 1.3E-05 45.9 5.3 88 413-500 211-307 (585)
84 KOG3763 mRNA export factor TAP 88.4 0.91 2E-05 44.7 5.4 97 82-193 209-307 (585)
85 smart00368 LRR_RI Leucine rich 85.7 1.3 2.9E-05 24.0 2.9 25 143-186 2-26 (28)
86 PF13504 LRR_7: Leucine rich r 85.4 0.48 1E-05 22.2 0.9 9 496-504 3-11 (17)
87 KOG0274 Cdc4 and related F-box 84.4 0.32 7E-06 49.2 0.2 38 3-41 106-143 (537)
88 KOG0532 Leucine-rich repeat (L 82.0 0.26 5.6E-06 48.6 -1.5 104 370-483 144-248 (722)
89 KOG0532 Leucine-rich repeat (L 76.4 0.57 1.2E-05 46.3 -1.0 34 370-405 212-245 (722)
90 PF13306 LRR_5: Leucine rich r 66.7 1.9 4.2E-05 34.2 0.1 11 443-453 55-65 (129)
91 PF00560 LRR_1: Leucine Rich R 64.4 3.5 7.5E-05 20.8 0.7 9 496-504 2-10 (22)
92 PF07723 LRR_2: Leucine Rich R 62.4 7 0.00015 20.8 1.7 25 345-369 2-26 (26)
93 KOG3926 F-box proteins [Amino 59.1 13 0.00028 33.1 3.7 37 4-40 201-237 (332)
94 smart00370 LRR Leucine-rich re 58.4 8 0.00017 20.3 1.6 14 469-482 2-15 (26)
95 smart00369 LRR_TYP Leucine-ric 58.4 8 0.00017 20.3 1.6 14 469-482 2-15 (26)
96 KOG4242 Predicted myosin-I-bin 54.8 54 0.0012 32.3 7.2 229 174-405 199-451 (553)
97 smart00365 LRR_SD22 Leucine-ri 42.1 23 0.00051 18.8 1.7 13 469-481 2-14 (26)
98 PF03382 DUF285: Mycoplasma pr 40.6 19 0.00041 28.2 1.8 56 490-549 57-114 (120)
99 KOG3735 Tropomodulin and leiom 36.8 89 0.0019 29.3 5.5 85 204-288 189-277 (353)
100 KOG2502 Tub family proteins [G 34.2 29 0.00063 32.4 2.1 34 7-40 47-87 (355)
101 PF03382 DUF285: Mycoplasma pr 33.6 35 0.00075 26.7 2.2 7 185-191 59-65 (120)
102 KOG3735 Tropomodulin and leiom 23.9 2.2E+02 0.0048 26.9 5.8 99 78-195 185-291 (353)
103 smart00364 LRR_BAC Leucine-ric 20.4 61 0.0013 17.3 0.9 13 470-482 3-15 (26)
No 1
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=100.00 E-value=2e-35 Score=263.19 Aligned_cols=385 Identities=22% Similarity=0.341 Sum_probs=243.3
Q ss_pred CCCChHHHHHHHHhcCCccchhhhHHhhHHHHhhhccccccccccCCCCCchHHHHhhcccCceecccCccCCch-hHHH
Q 046157 6 LDLPPECWELIFNSLNDQSHFESLSLVSHRFLSITNYLRNSLKLTDPSTPFLPQLFNRFQNLKKIDLSEFQGDPN-SILY 84 (577)
Q Consensus 6 ~~LP~evl~~I~~~L~~~~~~~~~~~vcr~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~-~~l~ 84 (577)
-.||+|++..||++| +.+.+.+++.+|+-|+..+. .-.+++++++..+..+++ +.+.
T Consensus 73 ~~LPpEl~lkvFS~L-Dtksl~r~a~~c~~~n~~Al---------------------D~~~~q~idL~t~~rDv~g~VV~ 130 (483)
T KOG4341|consen 73 RSLPPELLLKVFSML-DTKSLCRAAQCCTMWNKLAL---------------------DGSCWQHIDLFTFQRDVDGGVVE 130 (483)
T ss_pred ccCCHHHHHHHHHHH-hHHHHHHHHHHHHHhhhhhh---------------------ccccceeeehhcchhcCCCccee
Confidence 469999999999999 89999999999999987661 112335555555443333 2222
Q ss_pred HHhhc-CCCccEEeccCCCCcChhhHHHHHHcCCCCCeeecCCCccccchhHHHHHhhcCCCcEeeccCCCCCCCCCCcC
Q 046157 85 LISRS-GLDLESLNISNLKSFPFMGLKELGTKMKNLKELNCSKNFSFRDSDLIAVAETCEFLEVLDISYPENDSSFLPQG 163 (577)
Q Consensus 85 ~~~~~-~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~ 163 (577)
.+.+. +..+++|.++||..+.+..+..+...||++++|.+.+|..+++..+..+.+.|++|++|++..|.
T Consensus 131 ~~~~Rcgg~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~--------- 201 (483)
T KOG4341|consen 131 NMISRCGGFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCS--------- 201 (483)
T ss_pred hHhhhhccccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccc---------
Confidence 23222 34566666666666666656555555566655555555555555555555555555555555544
Q ss_pred cccccccccccCHHHHHHHHHcCccCcEEeccCCcccChhHHHHHHhcCCCCcEEEeccCCCCCHHHHHHHHhcCCCccE
Q 046157 164 FQNIQSFSFYITDSGIEALSMKLKRLKRINLSGNFFITDKSLMFLSSNLVLLREILIRDCDFITQSGISFAMRNSPNLVS 243 (577)
Q Consensus 164 ~~~~~~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~ 243 (577)
.+++..+..++++|++|+++++++|+.++..++..+.+++..++.+...+|.....
T Consensus 202 ---------~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~l--------------- 257 (483)
T KOG4341|consen 202 ---------SITDVSLKYLAEGCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELEL--------------- 257 (483)
T ss_pred ---------hhHHHHHHHHHHhhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccH---------------
Confidence 34444444455555555555555544444444444443333333333333322222
Q ss_pred EEecCCCCCCcchhHHHHhhhhcCCCEEEcCCCCCChHHHHHHHhcCCCCcEEEecCCCCCCHHHHHHHHhcCCCcCeee
Q 046157 244 ISVNGIGIPTIDSCFKESFAYARGLCEIDLSNSFISDELLRLLGEACLPLKKLVLSHCYNFTLAGISFLLSKYQSLEHLN 323 (577)
Q Consensus 244 L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~ 323 (577)
+ .+..+...++-+.+++
T Consensus 258 -------------------------------------e--------------------------~l~~~~~~~~~i~~ln 274 (483)
T KOG4341|consen 258 -------------------------------------E--------------------------ALLKAAAYCLEILKLN 274 (483)
T ss_pred -------------------------------------H--------------------------HHHHHhccChHhhccc
Confidence 2 2222222333333444
Q ss_pred cccccccChHHHHHHHhcCCCCCEEeecCCCCCChHHHHHHHhhCCCCCeEEeeeccCCCCcccccccCCCCccEEEcCC
Q 046157 324 LEAANFLEDESMIDLSKFLTSLNFIDLGFCAKLTNSTFFTILRECPLLSEIKMETTNLGLDDFTTPLVINPQVKSLHLAR 403 (577)
Q Consensus 324 l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~ 403 (577)
+..|..++++++..+...+..|+.|..++|..+++..+..+..++++ |+.+.+.+
T Consensus 275 l~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~-------------------------L~~l~l~~ 329 (483)
T KOG4341|consen 275 LQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHN-------------------------LQVLELSG 329 (483)
T ss_pred hhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCc-------------------------eEEEeccc
Confidence 44444455666666666666667777766666666666666655544 34444445
Q ss_pred CCCCCHHHHHHHHhhCCCccEEecCCCCCCCHHHHHHHHhhCCCCcEEEcccccccccccccccCCCceEEEccCCCCCH
Q 046157 404 NGNLSDESLKKLAILCPNLEVIDLSHCLGITEEGIGEILKSCCEIKCLEIKRCRAVFDLGIDLELPKLEVLQASGSALND 483 (577)
Q Consensus 404 ~~~l~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~i~~ 483 (577)
|..+++.++..++..++.|+.+++..|..+++..+..+..+|+.|+++.++.|.. ++|
T Consensus 330 c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~----------------------itD 387 (483)
T KOG4341|consen 330 CQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCEL----------------------ITD 387 (483)
T ss_pred cchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhh----------------------hhh
Confidence 5667777777777778888888888887777766777777888888888887774 445
Q ss_pred HHHHHHHH---hCCCccEEecCCCCCCChhhHHHHHhhCCCCcEEEecCCCCCcHHHHHHHHHhCCCCceeccCCC
Q 046157 484 HALKMIAN---TCSRILHLDLDNCLNVTTSGVKEVVEHCRTLREINLRWCDEVNVDIVAWMVFSRPSLRKIIPPCG 556 (577)
Q Consensus 484 ~~~~~l~~---~~~~L~~L~l~~c~~l~~~~l~~~~~~~~~L~~L~l~~c~~~~~~~~~~~~~~~~~L~~l~~~~~ 556 (577)
+++..+.. ....|+.+.+++|+.+++..+..+ ..|++|+.+++.+|..++.+.+..+..++|+++....-..
T Consensus 388 ~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l-~~c~~Leri~l~~~q~vtk~~i~~~~~~lp~i~v~a~~a~ 462 (483)
T KOG4341|consen 388 EGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHL-SICRNLERIELIDCQDVTKEAISRFATHLPNIKVHAYFAP 462 (483)
T ss_pred hhhhhhhhccccccccceeeecCCCCchHHHHHHH-hhCcccceeeeechhhhhhhhhHHHHhhCccceehhhccC
Confidence 54443332 456899999999998888877765 7899999999999999999999999999999988765543
No 2
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.93 E-value=7.1e-26 Score=202.58 Aligned_cols=332 Identities=24% Similarity=0.360 Sum_probs=280.0
Q ss_pred CchHHHHhhc-ccCceecccCccCCchhHHHHHhhcCCCccEEeccCCCCcChhhHHHHHHcCCCCCeeecCCCccccch
Q 046157 55 PFLPQLFNRF-QNLKKIDLSEFQGDPNSILYLISRSGLDLESLNISNLKSFPFMGLKELGTKMKNLKELNCSKNFSFRDS 133 (577)
Q Consensus 55 ~~~~~~~~~~-~~l~~l~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~ 133 (577)
+.+..+..+. -.++.+.++++....+..+......+++++.|.+.+|.++++..+..+.+.|++|++|++..|..+++.
T Consensus 127 ~VV~~~~~Rcgg~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~ 206 (483)
T KOG4341|consen 127 GVVENMISRCGGFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDV 206 (483)
T ss_pred cceehHhhhhccccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHH
Confidence 4445556665 468999999999888888999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHhhcCCCcEeeccCCCCCCCCCCcCcccccccccccCHHHHHHHHHcCccCcEEeccCCcccChhHHHHHHhcCC
Q 046157 134 DLIAVAETCEFLEVLDISYPENDSSFLPQGFQNIQSFSFYITDSGIEALSMKLKRLKRINLSGNFFITDKSLMFLSSNLV 213 (577)
Q Consensus 134 ~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~ 213 (577)
.+..+...|++|+++++++|+ .+++.+++.+..++..++.+...||.....+.+..+...++
T Consensus 207 ~Lk~la~gC~kL~~lNlSwc~------------------qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~ 268 (483)
T KOG4341|consen 207 SLKYLAEGCRKLKYLNLSWCP------------------QISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCL 268 (483)
T ss_pred HHHHHHHhhhhHHHhhhccCc------------------hhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccCh
Confidence 999999999999999999999 68888899999999999999999999999999999988899
Q ss_pred CCcEEEeccCCCCCHHHHHHHHhcCCCccEEEecCCCCCCcchhHHHHhhhhcCCCEEEcCCCCCChHHHHHHHhcCCCC
Q 046157 214 LLREILIRDCDFITQSGISFAMRNSPNLVSISVNGIGIPTIDSCFKESFAYARGLCEIDLSNSFISDELLRLLGEACLPL 293 (577)
Q Consensus 214 ~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L 293 (577)
.+.++++..|..+++.++..+...+..|+.|+..++. .+++..+..+..++++|
T Consensus 269 ~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t--------------------------~~~d~~l~aLg~~~~~L 322 (483)
T KOG4341|consen 269 EILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCT--------------------------DITDEVLWALGQHCHNL 322 (483)
T ss_pred HhhccchhhhccccchHHHHHhhhhhHhhhhcccCCC--------------------------CCchHHHHHHhcCCCce
Confidence 9999999999999998877776777777777666543 56777888888889999
Q ss_pred cEEEecCCCCCCHHHHHHHHhcCCCcCeeecccccccChHHHHHHHhcCCCCCEEeecCCCCCChHHHHHHHhhCCCCCe
Q 046157 294 KKLVLSHCYNFTLAGISFLLSKYQSLEHLNLEAANFLEDESMIDLSKFLTSLNFIDLGFCAKLTNSTFFTILRECPLLSE 373 (577)
Q Consensus 294 ~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~ 373 (577)
+.+.+.+|..+++.++..+...++.|+.+++..+..+.+..+..+...++.|+.+.++.|..++++++..+...
T Consensus 323 ~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~------ 396 (483)
T KOG4341|consen 323 QVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSS------ 396 (483)
T ss_pred EEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhc------
Confidence 99999999999888888888889999999999888777777888888889999999988888888766544321
Q ss_pred EEeeeccCCCCcccccccCCCCccEEEcCCCCCCCHHHHHHHHhhCCCccEEecCCCCCCCHHHHHHHHhhCCCCcEEEc
Q 046157 374 IKMETTNLGLDDFTTPLVINPQVKSLHLARNGNLSDESLKKLAILCPNLEVIDLSHCLGITEEGIGEILKSCCEIKCLEI 453 (577)
Q Consensus 374 L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l 453 (577)
-.....|..+.+.+|+.+++..++.+. .|++||.+++.+|..++..++..+..++|+++...+
T Consensus 397 ----------------~c~~~~l~~lEL~n~p~i~d~~Le~l~-~c~~Leri~l~~~q~vtk~~i~~~~~~lp~i~v~a~ 459 (483)
T KOG4341|consen 397 ----------------SCSLEGLEVLELDNCPLITDATLEHLS-ICRNLERIELIDCQDVTKEAISRFATHLPNIKVHAY 459 (483)
T ss_pred ----------------cccccccceeeecCCCCchHHHHHHHh-hCcccceeeeechhhhhhhhhHHHHhhCccceehhh
Confidence 112346777778888877777777655 578899999988888888888888888888876643
No 3
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.91 E-value=1.7e-23 Score=229.34 Aligned_cols=467 Identities=19% Similarity=0.155 Sum_probs=193.6
Q ss_pred hHHHHhhcccCceecccCccCCchhHHHHHhhcCCCccEEeccCCCCcChhhHHHHHHcCCCCCeeecCCCccccchhHH
Q 046157 57 LPQLFNRFQNLKKIDLSEFQGDPNSILYLISRSGLDLESLNISNLKSFPFMGLKELGTKMKNLKELNCSKNFSFRDSDLI 136 (577)
Q Consensus 57 ~~~~~~~~~~l~~l~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~l~ 136 (577)
++..+..+++|+.|++++..... .....+.....+|++|+++++....... ...+++|++|+++++. +.. .+.
T Consensus 85 ~~~~~~~l~~L~~L~Ls~n~~~~-~ip~~~~~~l~~L~~L~Ls~n~l~~~~p----~~~l~~L~~L~Ls~n~-~~~-~~p 157 (968)
T PLN00113 85 ISSAIFRLPYIQTINLSNNQLSG-PIPDDIFTTSSSLRYLNLSNNNFTGSIP----RGSIPNLETLDLSNNM-LSG-EIP 157 (968)
T ss_pred CChHHhCCCCCCEEECCCCccCC-cCChHHhccCCCCCEEECcCCccccccC----ccccCCCCEEECcCCc-ccc-cCC
Confidence 35566778888888887654210 1111222345678888887664211100 0235677788777662 221 112
Q ss_pred HHHhhcCCCcEeeccCCCCCCCCCCcCccc---cccccc---ccCHHHHHHHHHcCccCcEEeccCCcccChhHHHHHHh
Q 046157 137 AVAETCEFLEVLDISYPENDSSFLPQGFQN---IQSFSF---YITDSGIEALSMKLKRLKRINLSGNFFITDKSLMFLSS 210 (577)
Q Consensus 137 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~---~~~~~~---~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~ 210 (577)
.....+++|++|++++|...... +..+.+ ++...+ .+.......+. .+++|+.|+++++. +.... .....
T Consensus 158 ~~~~~l~~L~~L~L~~n~l~~~~-p~~~~~l~~L~~L~L~~n~l~~~~p~~l~-~l~~L~~L~L~~n~-l~~~~-p~~l~ 233 (968)
T PLN00113 158 NDIGSFSSLKVLDLGGNVLVGKI-PNSLTNLTSLEFLTLASNQLVGQIPRELG-QMKSLKWIYLGYNN-LSGEI-PYEIG 233 (968)
T ss_pred hHHhcCCCCCEEECccCcccccC-ChhhhhCcCCCeeeccCCCCcCcCChHHc-CcCCccEEECcCCc-cCCcC-ChhHh
Confidence 22345677888888777621111 000111 110000 01000001111 33444444444321 11111 11112
Q ss_pred cCCCCcEEEeccCCCCCHHHHHHHHhcCCCccEEEecCCCCCCcchhHHHHhhhhcCCCEEEcCCCCCChHHHHHHHhcC
Q 046157 211 NLVLLREILIRDCDFITQSGISFAMRNSPNLVSISVNGIGIPTIDSCFKESFAYARGLCEIDLSNSFISDELLRLLGEAC 290 (577)
Q Consensus 211 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~l~~l~~~~ 290 (577)
.+++|++|++.++.... .++..+..+++|+.|++.++.+ ....+..+..+++|++|++++|.+....... ...+
T Consensus 234 ~l~~L~~L~L~~n~l~~--~~p~~l~~l~~L~~L~L~~n~l---~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~-~~~l 307 (968)
T PLN00113 234 GLTSLNHLDLVYNNLTG--PIPSSLGNLKNLQYLFLYQNKL---SGPIPPSIFSLQKLISLDLSDNSLSGEIPEL-VIQL 307 (968)
T ss_pred cCCCCCEEECcCceecc--ccChhHhCCCCCCEEECcCCee---eccCchhHhhccCcCEEECcCCeeccCCChh-HcCC
Confidence 34445555444432111 1112233444555555544432 1122333444455555555555443222211 1224
Q ss_pred CCCcEEEecCCCCCCHHHHHHHHhcCCCcCeeecccccccChHHHHHHHhcCCCCCEEeecCCCCCChHHHHHHHhhCCC
Q 046157 291 LPLKKLVLSHCYNFTLAGISFLLSKYQSLEHLNLEAANFLEDESMIDLSKFLTSLNFIDLGFCAKLTNSTFFTILRECPL 370 (577)
Q Consensus 291 ~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~ 370 (577)
++|+.|++.++.... .+...+..+++|+.|+++++. +.......+ ..+++|+.|+++++. +..... .....+++
T Consensus 308 ~~L~~L~l~~n~~~~--~~~~~~~~l~~L~~L~L~~n~-l~~~~p~~l-~~~~~L~~L~Ls~n~-l~~~~p-~~~~~~~~ 381 (968)
T PLN00113 308 QNLEILHLFSNNFTG--KIPVALTSLPRLQVLQLWSNK-FSGEIPKNL-GKHNNLTVLDLSTNN-LTGEIP-EGLCSSGN 381 (968)
T ss_pred CCCcEEECCCCccCC--cCChhHhcCCCCCEEECcCCC-CcCcCChHH-hCCCCCcEEECCCCe-eEeeCC-hhHhCcCC
Confidence 555555555443211 111223445556666665554 222111112 224556666665543 111000 00112334
Q ss_pred CCeEEeeeccCCCCcccccccCCCCccEEEcCCCCCCCHHHHHHHHhhCCCccEEecCCCCCCCHHHHHHHHhhCCCCcE
Q 046157 371 LSEIKMETTNLGLDDFTTPLVINPQVKSLHLARNGNLSDESLKKLAILCPNLEVIDLSHCLGITEEGIGEILKSCCEIKC 450 (577)
Q Consensus 371 L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~ 450 (577)
|+.|++.+|.+.... +..+..+++|+.|++++|. ++..... ....+++|+.|++++| .++.. +......+++|+.
T Consensus 382 L~~L~l~~n~l~~~~-p~~~~~~~~L~~L~L~~n~-l~~~~p~-~~~~l~~L~~L~Ls~N-~l~~~-~~~~~~~l~~L~~ 456 (968)
T PLN00113 382 LFKLILFSNSLEGEI-PKSLGACRSLRRVRLQDNS-FSGELPS-EFTKLPLVYFLDISNN-NLQGR-INSRKWDMPSLQM 456 (968)
T ss_pred CCEEECcCCEecccC-CHHHhCCCCCCEEECcCCE-eeeECCh-hHhcCCCCCEEECcCC-cccCc-cChhhccCCCCcE
Confidence 444444444332221 2334445556666655544 2211111 1123455555555554 22221 1111234555555
Q ss_pred EEcccccccccccccc------------------------cCCCceEEEccCCCCCHHHHHHHHHhCCCccEEecCCCCC
Q 046157 451 LEIKRCRAVFDLGIDL------------------------ELPKLEVLQASGSALNDHALKMIANTCSRILHLDLDNCLN 506 (577)
Q Consensus 451 L~l~~~~~l~~~~~~~------------------------~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~c~~ 506 (577)
|++++|.......... .+++|+.|++++|.+.......+ ..+++|+.|++++|.
T Consensus 457 L~L~~n~~~~~~p~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~-~~l~~L~~L~Ls~N~- 534 (968)
T PLN00113 457 LSLARNKFFGGLPDSFGSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDEL-SSCKKLVSLDLSHNQ- 534 (968)
T ss_pred EECcCceeeeecCcccccccceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCChHH-cCccCCCEEECCCCc-
Confidence 5555554332222222 34444555555544433222222 134556666666543
Q ss_pred CChhhHHHHHhhCCCCcEEEecCCCCCcHHHHHHHHHhCCCCceeccCCC
Q 046157 507 VTTSGVKEVVEHCRTLREINLRWCDEVNVDIVAWMVFSRPSLRKIIPPCG 556 (577)
Q Consensus 507 l~~~~l~~~~~~~~~L~~L~l~~c~~~~~~~~~~~~~~~~~L~~l~~~~~ 556 (577)
++... ...+..+++|+.|++++|.... .+......++.|+.++++++
T Consensus 535 l~~~~-p~~~~~l~~L~~L~Ls~N~l~~--~~p~~l~~l~~L~~l~ls~N 581 (968)
T PLN00113 535 LSGQI-PASFSEMPVLSQLDLSQNQLSG--EIPKNLGNVESLVQVNISHN 581 (968)
T ss_pred ccccC-ChhHhCcccCCEEECCCCcccc--cCChhHhcCcccCEEeccCC
Confidence 33211 1223456666666666653321 12233345666677766654
No 4
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=99.91 E-value=9.6e-24 Score=180.45 Aligned_cols=291 Identities=21% Similarity=0.216 Sum_probs=177.7
Q ss_pred CCCChHHHHHHHHhcCCccchhhhHHhhHHHHhhhccccccccccCCCCCchHHHHhhcccCceecccCccCCchhHHHH
Q 046157 6 LDLPPECWELIFNSLNDQSHFESLSLVSHRFLSITNYLRNSLKLTDPSTPFLPQLFNRFQNLKKIDLSEFQGDPNSILYL 85 (577)
Q Consensus 6 ~~LP~evl~~I~~~L~~~~~~~~~~~vcr~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~l~~ 85 (577)
-.|||||+..||+.| ..+++++++.|||||++++.-.+ .+..+|+.+-.-. ...+..
T Consensus 99 ~slpDEill~IFs~L-~kk~LL~~~~VC~Rfyr~~~de~---------------------lW~~lDl~~r~i~-p~~l~~ 155 (419)
T KOG2120|consen 99 DSLPDEILLGIFSCL-CKKELLKVSGVCKRFYRLASDES---------------------LWQTLDLTGRNIH-PDVLGR 155 (419)
T ss_pred ccCCHHHHHHHHHhc-cHHHHHHHHHHHHHHhhcccccc---------------------ceeeeccCCCccC-hhHHHH
Confidence 359999999999999 59999999999999999883222 2245555443211 122333
Q ss_pred HhhcCCCccEEeccCCCCcChhhH-HHHHHcCCCCCeeecCCCccccchhHHHHHhhcCCCcEeeccCCCCCCCCCCcCc
Q 046157 86 ISRSGLDLESLNISNLKSFPFMGL-KELGTKMKNLKELNCSKNFSFRDSDLIAVAETCEFLEVLDISYPENDSSFLPQGF 164 (577)
Q Consensus 86 ~~~~~~~L~~L~l~~~~~~~~~~l-~~~~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 164 (577)
+.+ ..+..+++.... +....+ +.+...-..|++|++++. .++...+..+...|.+|+.|.+.+..
T Consensus 156 l~~--rgV~v~Rlar~~-~~~prlae~~~~frsRlq~lDLS~s-~it~stl~~iLs~C~kLk~lSlEg~~---------- 221 (419)
T KOG2120|consen 156 LLS--RGVIVFRLARSF-MDQPRLAEHFSPFRSRLQHLDLSNS-VITVSTLHGILSQCSKLKNLSLEGLR---------- 221 (419)
T ss_pred HHh--CCeEEEEcchhh-hcCchhhhhhhhhhhhhHHhhcchh-heeHHHHHHHHHHHHhhhhccccccc----------
Confidence 332 234455544221 222212 112222246888888865 66777777888888889988888887
Q ss_pred ccccccccccCHHHHHHHHHcCccCcEEeccCCcccChhHHHHHHhcCCCCcEEEeccCCCCCHHHHHHHHhcCCCccEE
Q 046157 165 QNIQSFSFYITDSGIEALSMKLKRLKRINLSGNFFITDKSLMFLSSNLVLLREILIRDCDFITQSGISFAMRNSPNLVSI 244 (577)
Q Consensus 165 ~~~~~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L 244 (577)
+.|.....++ ...+|+.|++++|..++..++..+...|+.|.+|++++|...++..-..+..--++|+.|
T Consensus 222 ---------LdD~I~~~iA-kN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~L 291 (419)
T KOG2120|consen 222 ---------LDDPIVNTIA-KNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQL 291 (419)
T ss_pred ---------cCcHHHHHHh-ccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhchhhhhh
Confidence 7777777777 567888999988888888888888888888888888888766554222222334666666
Q ss_pred EecCCCCCCcchhHHHHhhhhcCCCEEEcCCCCCChHHHHHHHhcCCCCcEEEecCCCCCCHHHHHHHHhcCCCcCeeec
Q 046157 245 SVNGIGIPTIDSCFKESFAYARGLCEIDLSNSFISDELLRLLGEACLPLKKLVLSHCYNFTLAGISFLLSKYQSLEHLNL 324 (577)
Q Consensus 245 ~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l 324 (577)
+++|+.- .+-...+..+...||+|.+|++++|..+.+ +....+..++.|++|.+
T Consensus 292 NlsG~rr-------------------------nl~~sh~~tL~~rcp~l~~LDLSD~v~l~~-~~~~~~~kf~~L~~lSl 345 (419)
T KOG2120|consen 292 NLSGYRR-------------------------NLQKSHLSTLVRRCPNLVHLDLSDSVMLKN-DCFQEFFKFNYLQHLSL 345 (419)
T ss_pred hhhhhHh-------------------------hhhhhHHHHHHHhCCceeeeccccccccCc-hHHHHHHhcchheeeeh
Confidence 6666542 112223444455555555555555555544 33333445556666666
Q ss_pred ccccccChHHHHHHHhcCCCCCEEeecCCCCCChHHHHHHHhhCCCCC
Q 046157 325 EAANFLEDESMIDLSKFLTSLNFIDLGFCAKLTNSTFFTILRECPLLS 372 (577)
Q Consensus 325 ~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~ 372 (577)
+.|..+..+.+..+.. .|.|.+|++.+| +++..++.+...|++|+
T Consensus 346 sRCY~i~p~~~~~l~s-~psl~yLdv~g~--vsdt~mel~~e~~~~lk 390 (419)
T KOG2120|consen 346 SRCYDIIPETLLELNS-KPSLVYLDVFGC--VSDTTMELLKEMLSHLK 390 (419)
T ss_pred hhhcCCChHHeeeecc-CcceEEEEeccc--cCchHHHHHHHhCcccc
Confidence 5555444443333332 456666666554 33444444444555543
No 5
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.89 E-value=1.9e-22 Score=221.17 Aligned_cols=443 Identities=18% Similarity=0.143 Sum_probs=245.5
Q ss_pred HHHhhcccCceecccCccCCchhHHHHHhhcCCCccEEeccCCCCcChhhHHHHHHcCCCCCeeecCCCccccchhHHHH
Q 046157 59 QLFNRFQNLKKIDLSEFQGDPNSILYLISRSGLDLESLNISNLKSFPFMGLKELGTKMKNLKELNCSKNFSFRDSDLIAV 138 (577)
Q Consensus 59 ~~~~~~~~l~~l~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~l~~~ 138 (577)
.++..+++|++|++++...... . .....++|++|+++++.. .. .+......+++|++|+++++. +.. .+...
T Consensus 112 ~~~~~l~~L~~L~Ls~n~l~~~--~--p~~~l~~L~~L~Ls~n~~-~~-~~p~~~~~l~~L~~L~L~~n~-l~~-~~p~~ 183 (968)
T PLN00113 112 DIFTTSSSLRYLNLSNNNFTGS--I--PRGSIPNLETLDLSNNML-SG-EIPNDIGSFSSLKVLDLGGNV-LVG-KIPNS 183 (968)
T ss_pred HHhccCCCCCEEECcCCccccc--c--CccccCCCCEEECcCCcc-cc-cCChHHhcCCCCCEEECccCc-ccc-cCChh
Confidence 4455778999999987642110 0 001246788888887642 11 111223457788888887763 211 11122
Q ss_pred HhhcCCCcEeeccCCCCCCCCCCcCcc---ccccccc---ccCHHHHHHHHHcCccCcEEeccCCcccChhHHHHHHhcC
Q 046157 139 AETCEFLEVLDISYPENDSSFLPQGFQ---NIQSFSF---YITDSGIEALSMKLKRLKRINLSGNFFITDKSLMFLSSNL 212 (577)
Q Consensus 139 ~~~~~~L~~L~l~~~~~~~~~~~~~~~---~~~~~~~---~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~ 212 (577)
...+++|++|++++|.....+ +..+. +++...+ .+.......+. .+++|++|++++|. +... +......+
T Consensus 184 ~~~l~~L~~L~L~~n~l~~~~-p~~l~~l~~L~~L~L~~n~l~~~~p~~l~-~l~~L~~L~L~~n~-l~~~-~p~~l~~l 259 (968)
T PLN00113 184 LTNLTSLEFLTLASNQLVGQI-PRELGQMKSLKWIYLGYNNLSGEIPYEIG-GLTSLNHLDLVYNN-LTGP-IPSSLGNL 259 (968)
T ss_pred hhhCcCCCeeeccCCCCcCcC-ChHHcCcCCccEEECcCCccCCcCChhHh-cCCCCCEEECcCce-eccc-cChhHhCC
Confidence 235677888888777643222 11111 2221111 11111112233 67888888888753 2221 22233557
Q ss_pred CCCcEEEeccCCCCCHHHHHHHHhcCCCccEEEecCCCCCCcchhHHHHhhhhcCCCEEEcCCCCCChHHHHHHHhcCCC
Q 046157 213 VLLREILIRDCDFITQSGISFAMRNSPNLVSISVNGIGIPTIDSCFKESFAYARGLCEIDLSNSFISDELLRLLGEACLP 292 (577)
Q Consensus 213 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~ 292 (577)
++|++|++.++..... ++..+..+++|+.|++.++.+ ...++..+..+++|+.|++.++.+.......+. .+++
T Consensus 260 ~~L~~L~L~~n~l~~~--~p~~l~~l~~L~~L~Ls~n~l---~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~-~l~~ 333 (968)
T PLN00113 260 KNLQYLFLYQNKLSGP--IPPSIFSLQKLISLDLSDNSL---SGEIPELVIQLQNLEILHLFSNNFTGKIPVALT-SLPR 333 (968)
T ss_pred CCCCEEECcCCeeecc--CchhHhhccCcCEEECcCCee---ccCCChhHcCCCCCcEEECCCCccCCcCChhHh-cCCC
Confidence 8888888887642211 122345577888888877653 223445556677788888877766544333333 3677
Q ss_pred CcEEEecCCCCCCHHHHHHHHhcCCCcCeeecccccccChHHHHHHH-----------------------hcCCCCCEEe
Q 046157 293 LKKLVLSHCYNFTLAGISFLLSKYQSLEHLNLEAANFLEDESMIDLS-----------------------KFLTSLNFID 349 (577)
Q Consensus 293 L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~-----------------------~~~~~L~~L~ 349 (577)
|+.|++.++.... .+...+..+++|+.|+++++. ++......+. ..+++|+.|+
T Consensus 334 L~~L~L~~n~l~~--~~p~~l~~~~~L~~L~Ls~n~-l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~ 410 (968)
T PLN00113 334 LQVLQLWSNKFSG--EIPKNLGKHNNLTVLDLSTNN-LTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVR 410 (968)
T ss_pred CCEEECcCCCCcC--cCChHHhCCCCCcEEECCCCe-eEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEE
Confidence 7777777664321 122224455667777776654 2211111111 1244555555
Q ss_pred ecCCCCCChHHHHHHHhhCCCCCeEEeeeccCCCCcccccccCCCCccEEEcCCCCCCCHHHHHHHHhhCCCccEEecCC
Q 046157 350 LGFCAKLTNSTFFTILRECPLLSEIKMETTNLGLDDFTTPLVINPQVKSLHLARNGNLSDESLKKLAILCPNLEVIDLSH 429 (577)
Q Consensus 350 l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~ 429 (577)
++++. ++.. +......+++|+.|++++|.+.... ...+..+++|+.|++++|..... ... . ...++|+.|++++
T Consensus 411 L~~n~-l~~~-~p~~~~~l~~L~~L~Ls~N~l~~~~-~~~~~~l~~L~~L~L~~n~~~~~-~p~-~-~~~~~L~~L~ls~ 484 (968)
T PLN00113 411 LQDNS-FSGE-LPSEFTKLPLVYFLDISNNNLQGRI-NSRKWDMPSLQMLSLARNKFFGG-LPD-S-FGSKRLENLDLSR 484 (968)
T ss_pred CcCCE-eeeE-CChhHhcCCCCCEEECcCCcccCcc-ChhhccCCCCcEEECcCceeeee-cCc-c-cccccceEEECcC
Confidence 54433 1111 0111224555555665555543321 23334566777777766652211 001 1 1236788888887
Q ss_pred CCCCCHHHHHHHHhhCCCCcEEEccccccccccc-ccccCCCceEEEccCCCCCHHHHHHHHHhCCCccEEecCCCCCCC
Q 046157 430 CLGITEEGIGEILKSCCEIKCLEIKRCRAVFDLG-IDLELPKLEVLQASGSALNDHALKMIANTCSRILHLDLDNCLNVT 508 (577)
Q Consensus 430 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~-~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~c~~l~ 508 (577)
| .++.. +...+..+++|+.|++++|....... ....+++|++|++++|.++......+. .+++|+.|++++|. ++
T Consensus 485 n-~l~~~-~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~-~l~~L~~L~Ls~N~-l~ 560 (968)
T PLN00113 485 N-QFSGA-VPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFS-EMPVLSQLDLSQNQ-LS 560 (968)
T ss_pred C-ccCCc-cChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHh-CcccCCEEECCCCc-cc
Confidence 7 34432 22335678899999999997443333 334789999999999998865444443 57999999999986 54
Q ss_pred hhhHHHHHhhCCCCcEEEecCCCCC
Q 046157 509 TSGVKEVVEHCRTLREINLRWCDEV 533 (577)
Q Consensus 509 ~~~l~~~~~~~~~L~~L~l~~c~~~ 533 (577)
.. +...+.++++|+.|++++|+..
T Consensus 561 ~~-~p~~l~~l~~L~~l~ls~N~l~ 584 (968)
T PLN00113 561 GE-IPKNLGNVESLVQVNISHNHLH 584 (968)
T ss_pred cc-CChhHhcCcccCEEeccCCcce
Confidence 32 2334467899999999998643
No 6
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.74 E-value=3.2e-19 Score=166.86 Aligned_cols=131 Identities=18% Similarity=0.260 Sum_probs=57.7
Q ss_pred CCCCCeEEeeeccCCCCcccccccCCCCccEEEcCCCCCCCHHHHHHHHhhCCCccEEecCCCCCCCHHHHHHHHhhCCC
Q 046157 368 CPLLSEIKMETTNLGLDDFTTPLVINPQVKSLHLARNGNLSDESLKKLAILCPNLEVIDLSHCLGITEEGIGEILKSCCE 447 (577)
Q Consensus 368 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 447 (577)
+..|+.|+++.|.+.... +......++|+.|+++.+. ++.-.-..+. .+..|++|.++++ .++... ...+..+++
T Consensus 292 Lt~L~~L~lS~NaI~rih-~d~WsftqkL~~LdLs~N~-i~~l~~~sf~-~L~~Le~LnLs~N-si~~l~-e~af~~lss 366 (873)
T KOG4194|consen 292 LTSLEQLDLSYNAIQRIH-IDSWSFTQKLKELDLSSNR-ITRLDEGSFR-VLSQLEELNLSHN-SIDHLA-EGAFVGLSS 366 (873)
T ss_pred cchhhhhccchhhhheee-cchhhhcccceeEeccccc-cccCChhHHH-HHHHhhhhccccc-chHHHH-hhHHHHhhh
Confidence 445555555555544333 3444455555555555543 2221111111 2345555555554 232211 112344555
Q ss_pred CcEEEccccc---ccccccc-cccCCCceEEEccCCCCCHHHHHHHHHhCCCccEEecCCC
Q 046157 448 IKCLEIKRCR---AVFDLGI-DLELPKLEVLQASGSALNDHALKMIANTCSRILHLDLDNC 504 (577)
Q Consensus 448 L~~L~l~~~~---~l~~~~~-~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~c 504 (577)
|++|+|+.+. .+.+... ...+|.|+.|.+.+|++....-.++. .+++|++|++.++
T Consensus 367 L~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfs-gl~~LE~LdL~~N 426 (873)
T KOG4194|consen 367 LHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFS-GLEALEHLDLGDN 426 (873)
T ss_pred hhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecchhhhc-cCcccceecCCCC
Confidence 5555555544 1122111 12355555555555555443333332 3455555555554
No 7
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.73 E-value=2.2e-19 Score=167.89 Aligned_cols=347 Identities=18% Similarity=0.173 Sum_probs=223.6
Q ss_pred CCCcEeeccCCCCCCCCCCcCcccccccccccCHHHHHHHHHcCccCcEEeccCCcccChhHHHHHHhcCCCCcEEEecc
Q 046157 143 EFLEVLDISYPENDSSFLPQGFQNIQSFSFYITDSGIEALSMKLKRLKRINLSGNFFITDKSLMFLSSNLVLLREILIRD 222 (577)
Q Consensus 143 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~ 222 (577)
+.-+.|++++|. +.+..+..+- .+++|+++.+..+. + ..++.+..-..+|+.|++..
T Consensus 78 ~~t~~LdlsnNk-------------------l~~id~~~f~-nl~nLq~v~l~~N~-L--t~IP~f~~~sghl~~L~L~~ 134 (873)
T KOG4194|consen 78 SQTQTLDLSNNK-------------------LSHIDFEFFY-NLPNLQEVNLNKNE-L--TRIPRFGHESGHLEKLDLRH 134 (873)
T ss_pred cceeeeeccccc-------------------cccCcHHHHh-cCCcceeeeeccch-h--hhcccccccccceeEEeeec
Confidence 456789999998 6666666555 78999999998742 2 23344444466799999987
Q ss_pred CCCCCHHHHHHHHhcCCCccEEEecCCCCCCcchhHHHHhhhhcCCCEEEcCCCCCChHHHHHHHhcCCCCcEEEecCCC
Q 046157 223 CDFITQSGISFAMRNSPNLVSISVNGIGIPTIDSCFKESFAYARGLCEIDLSNSFISDELLRLLGEACLPLKKLVLSHCY 302 (577)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~~ 302 (577)
.. ++.. -...+...|.|++|+++.+.+..+.. ..++.-.++++|+|.+|.+++-....+.. +.+|..|.++.+.
T Consensus 135 N~-I~sv-~se~L~~l~alrslDLSrN~is~i~~---~sfp~~~ni~~L~La~N~It~l~~~~F~~-lnsL~tlkLsrNr 208 (873)
T KOG4194|consen 135 NL-ISSV-TSEELSALPALRSLDLSRNLISEIPK---PSFPAKVNIKKLNLASNRITTLETGHFDS-LNSLLTLKLSRNR 208 (873)
T ss_pred cc-cccc-cHHHHHhHhhhhhhhhhhchhhcccC---CCCCCCCCceEEeeccccccccccccccc-cchheeeecccCc
Confidence 43 2221 12344567899999999887644332 23455678999999999887655444433 5578888888764
Q ss_pred CCCHHHHHHHHhcCCCcCeeecccccccChHHHHHHHhcCCCCCEEeecCCC--CCChHHHHHHHhhCCCCCeEEeeecc
Q 046157 303 NFTLAGISFLLSKYQSLEHLNLEAANFLEDESMIDLSKFLTSLNFIDLGFCA--KLTNSTFFTILRECPLLSEIKMETTN 380 (577)
Q Consensus 303 ~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~--~~~~~~l~~l~~~~~~L~~L~l~~~~ 380 (577)
..+ ... ..++.+++|+.|++..+. +....... .+.+++|+.|.+..+. ++.+..+. .|.++++|+++.|.
T Consensus 209 itt-Lp~-r~Fk~L~~L~~LdLnrN~-irive~lt-FqgL~Sl~nlklqrN~I~kL~DG~Fy----~l~kme~l~L~~N~ 280 (873)
T KOG4194|consen 209 ITT-LPQ-RSFKRLPKLESLDLNRNR-IRIVEGLT-FQGLPSLQNLKLQRNDISKLDDGAFY----GLEKMEHLNLETNR 280 (873)
T ss_pred ccc-cCH-HHhhhcchhhhhhccccc-eeeehhhh-hcCchhhhhhhhhhcCcccccCccee----eecccceeecccch
Confidence 332 111 225668899999988776 32222222 3457888888887644 44444443 47788999998887
Q ss_pred CCCCcccccccCCCCccEEEcCCCCCCCHHHHHHHHhhCCCccEEecCCCCCCCHHHHHHHHhhCCCCcEEEcccccccc
Q 046157 381 LGLDDFTTPLVINPQVKSLHLARNGNLSDESLKKLAILCPNLEVIDLSHCLGITEEGIGEILKSCCEIKCLEIKRCRAVF 460 (577)
Q Consensus 381 ~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~ 460 (577)
+..-. -..+.++.+|+.|+++.+. +....... -..+++|+.|+++++ .++.-.-. -+..+..|+.|+|+.+. +.
T Consensus 281 l~~vn-~g~lfgLt~L~~L~lS~Na-I~rih~d~-WsftqkL~~LdLs~N-~i~~l~~~-sf~~L~~Le~LnLs~Ns-i~ 354 (873)
T KOG4194|consen 281 LQAVN-EGWLFGLTSLEQLDLSYNA-IQRIHIDS-WSFTQKLKELDLSSN-RITRLDEG-SFRVLSQLEELNLSHNS-ID 354 (873)
T ss_pred hhhhh-cccccccchhhhhccchhh-hheeecch-hhhcccceeEecccc-ccccCChh-HHHHHHHhhhhcccccc-hH
Confidence 65433 3445678888888888765 32211111 125788999999887 44432222 24556788888888887 44
Q ss_pred ccc--ccccCCCceEEEccCCCCCH--HHHHHHHHhCCCccEEecCCCCCCChhhHHHHHhhCCCCcEEEecCCCCCc
Q 046157 461 DLG--IDLELPKLEVLQASGSALND--HALKMIANTCSRILHLDLDNCLNVTTSGVKEVVEHCRTLREINLRWCDEVN 534 (577)
Q Consensus 461 ~~~--~~~~~~~L~~L~l~~~~i~~--~~~~~l~~~~~~L~~L~l~~c~~l~~~~l~~~~~~~~~L~~L~l~~c~~~~ 534 (577)
... ....+.+|++|+|++|.+.- +.-......+++|++|.+.++ ++....-.. +.+++.|++|++.+.+-.+
T Consensus 355 ~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gN-qlk~I~krA-fsgl~~LE~LdL~~NaiaS 430 (873)
T KOG4194|consen 355 HLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGN-QLKSIPKRA-FSGLEALEHLDLGDNAIAS 430 (873)
T ss_pred HHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCc-eeeecchhh-hccCcccceecCCCCccee
Confidence 433 33467889999998875431 112223335788999999885 466544333 4778889999888865544
No 8
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.70 E-value=1.6e-15 Score=145.01 Aligned_cols=269 Identities=22% Similarity=0.259 Sum_probs=148.4
Q ss_pred hHHHHhhhhcCCCEEEcCCCCCChHHHHHHHh---cCCCCcEEEecCCCCCC-HHHH---HHHHhcCCCcCeeecccccc
Q 046157 257 CFKESFAYARGLCEIDLSNSFISDELLRLLGE---ACLPLKKLVLSHCYNFT-LAGI---SFLLSKYQSLEHLNLEAANF 329 (577)
Q Consensus 257 ~~~~~~~~~~~L~~L~l~~~~~~~~~l~~l~~---~~~~L~~L~l~~~~~~~-~~~l---~~~~~~~~~L~~L~l~~~~~ 329 (577)
.+...+..+++|+.++++++.+++.....+.. ..++++++.+.++.... ..++ ...+..+++|++|+++++..
T Consensus 14 ~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~ 93 (319)
T cd00116 14 RATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNAL 93 (319)
T ss_pred chHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCC
Confidence 34555566667888888888776655444433 35667777777654321 1222 22334456777777776663
Q ss_pred cChHH---HHHHHhcCCCCCEEeecCCCCCChHHHHHHHhhCCCCCeEEeeeccCCCCcccccccCC-CCccEEEcCCCC
Q 046157 330 LEDES---MIDLSKFLTSLNFIDLGFCAKLTNSTFFTILRECPLLSEIKMETTNLGLDDFTTPLVIN-PQVKSLHLARNG 405 (577)
Q Consensus 330 ~~~~~---~~~l~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~-~~L~~L~l~~~~ 405 (577)
.... +..+... ++|++|++++|. +++.+...+... +..+ ++|+.|++++|.
T Consensus 94 -~~~~~~~~~~l~~~-~~L~~L~ls~~~-~~~~~~~~l~~~----------------------l~~~~~~L~~L~L~~n~ 148 (319)
T cd00116 94 -GPDGCGVLESLLRS-SSLQELKLNNNG-LGDRGLRLLAKG----------------------LKDLPPALEKLVLGRNR 148 (319)
T ss_pred -ChhHHHHHHHHhcc-CcccEEEeeCCc-cchHHHHHHHHH----------------------HHhCCCCceEEEcCCCc
Confidence 2221 2222222 447777776654 443333322111 1122 445555555544
Q ss_pred CCCHHHHHH---HHhhCCCccEEecCCCCCCCHHHHHHHH---hhCCCCcEEEccccccccccc------ccccCCCceE
Q 046157 406 NLSDESLKK---LAILCPNLEVIDLSHCLGITEEGIGEIL---KSCCEIKCLEIKRCRAVFDLG------IDLELPKLEV 473 (577)
Q Consensus 406 ~l~~~~l~~---l~~~~~~L~~L~l~~~~~~~~~~~~~~~---~~~~~L~~L~l~~~~~l~~~~------~~~~~~~L~~ 473 (577)
++...... ....+++|++|++++| .+++.++..+. ..+++|+.|++++|. +++.+ ....+++|+.
T Consensus 149 -l~~~~~~~~~~~~~~~~~L~~L~l~~n-~l~~~~~~~l~~~l~~~~~L~~L~L~~n~-i~~~~~~~l~~~~~~~~~L~~ 225 (319)
T cd00116 149 -LEGASCEALAKALRANRDLKELNLANN-GIGDAGIRALAEGLKANCNLEVLDLNNNG-LTDEGASALAETLASLKSLEV 225 (319)
T ss_pred -CCchHHHHHHHHHHhCCCcCEEECcCC-CCchHHHHHHHHHHHhCCCCCEEeccCCc-cChHHHHHHHHHhcccCCCCE
Confidence 33222222 2233456666666665 45544443333 233466666666664 33222 1224677888
Q ss_pred EEccCCCCCHHHHHHHHHhC----CCccEEecCCCCCCChhhHHHHH---hhCCCCcEEEecCCCCCcHHH---HHHHHH
Q 046157 474 LQASGSALNDHALKMIANTC----SRILHLDLDNCLNVTTSGVKEVV---EHCRTLREINLRWCDEVNVDI---VAWMVF 543 (577)
Q Consensus 474 L~l~~~~i~~~~~~~l~~~~----~~L~~L~l~~c~~l~~~~l~~~~---~~~~~L~~L~l~~c~~~~~~~---~~~~~~ 543 (577)
|++++|.+++.++..+...+ +.|++|++++| .+++.+...+. ..+++|+.++++++. +++++ +.....
T Consensus 226 L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n-~i~~~~~~~l~~~~~~~~~L~~l~l~~N~-l~~~~~~~~~~~~~ 303 (319)
T cd00116 226 LNLGDNNLTDAGAAALASALLSPNISLLTLSLSCN-DITDDGAKDLAEVLAEKESLLELDLRGNK-FGEEGAQLLAESLL 303 (319)
T ss_pred EecCCCcCchHHHHHHHHHHhccCCCceEEEccCC-CCCcHHHHHHHHHHhcCCCccEEECCCCC-CcHHHHHHHHHHHh
Confidence 88888878887777666554 68999999887 47655554443 445678999988874 44433 333444
Q ss_pred hC-CCCceeccCC
Q 046157 544 SR-PSLRKIIPPC 555 (577)
Q Consensus 544 ~~-~~L~~l~~~~ 555 (577)
.. +.|+.+++..
T Consensus 304 ~~~~~~~~~~~~~ 316 (319)
T cd00116 304 EPGNELESLWVKD 316 (319)
T ss_pred hcCCchhhcccCC
Confidence 44 6788887764
No 9
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.70 E-value=9.6e-15 Score=139.59 Aligned_cols=77 Identities=14% Similarity=0.150 Sum_probs=38.9
Q ss_pred cCHHHHHHHHHcCccCcEEeccCCcccChhHH---HHHHhcCCCCcEEEeccCCCCC-HHH---HHHHHhcCCCccEEEe
Q 046157 174 ITDSGIEALSMKLKRLKRINLSGNFFITDKSL---MFLSSNLVLLREILIRDCDFIT-QSG---ISFAMRNSPNLVSISV 246 (577)
Q Consensus 174 l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~---~~l~~~~~~L~~L~l~~~~~~~-~~~---~~~~~~~~~~L~~L~l 246 (577)
+++.....+...+++|+.|+++++ .+++... .......++++++++.++.... ... +...+..+++|+.|++
T Consensus 10 l~~~~~~~~~~~l~~L~~l~l~~~-~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l 88 (319)
T cd00116 10 LKTERATELLPKLLCLQVLRLEGN-TLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDL 88 (319)
T ss_pred ccccchHHHHHHHhhccEEeecCC-CCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEc
Confidence 444444455556667888888875 4444433 3333455667777776643221 111 1122233455555555
Q ss_pred cCCCC
Q 046157 247 NGIGI 251 (577)
Q Consensus 247 ~~~~~ 251 (577)
.++.+
T Consensus 89 ~~~~~ 93 (319)
T cd00116 89 SDNAL 93 (319)
T ss_pred cCCCC
Confidence 55443
No 10
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=99.65 E-value=1.4e-15 Score=154.61 Aligned_cols=281 Identities=28% Similarity=0.429 Sum_probs=167.1
Q ss_pred hHHHHHHhcCCCCcEEEeccCCCCCHHHHHHHHhcCCCccEEEecCC-CCCCcchhHHHHhhhhcCCCEEEcCCCCCChH
Q 046157 203 KSLMFLSSNLVLLREILIRDCDFITQSGISFAMRNSPNLVSISVNGI-GIPTIDSCFKESFAYARGLCEIDLSNSFISDE 281 (577)
Q Consensus 203 ~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~-~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 281 (577)
.....+...++.|+++.+.+|..+.+.++..+...+++|++|++.++ ..... ...
T Consensus 178 ~~~~~l~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~------------------------~~~ 233 (482)
T KOG1947|consen 178 KILLRLLSSCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITL------------------------SPL 233 (482)
T ss_pred HHHHHHHhhCchhhHhhhcccccCChhhHHHHHhhCchhheecccCccccccc------------------------chh
Confidence 33444444466666666666666666555556666666666666552 10000 011
Q ss_pred HHHHHHhcCCCCcEEEecCCCCCCHHHHHHHHhcCCCcCeeecccccccChHHHHHHHhcCCCCCEEeecCCCCCChHHH
Q 046157 282 LLRLLGEACLPLKKLVLSHCYNFTLAGISFLLSKYQSLEHLNLEAANFLEDESMIDLSKFLTSLNFIDLGFCAKLTNSTF 361 (577)
Q Consensus 282 ~l~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l 361 (577)
....+...+++|+.+++..+..+++.++..+...|++|+.|.+.+|..+++.++..+...+++|++|+++.|..+++.++
T Consensus 234 ~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l 313 (482)
T KOG1947|consen 234 LLLLLLSICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGL 313 (482)
T ss_pred HhhhhhhhcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHH
Confidence 11113333556666666665556666666666666677777766666566777777777777777777777777777777
Q ss_pred HHHHhhCCCCCeEEeeeccCCCCcccccccCCCCccEEEcCCCCCCC-HHHHHHHHhhCCCccEEecCCCCCCCHHHHHH
Q 046157 362 FTILRECPLLSEIKMETTNLGLDDFTTPLVINPQVKSLHLARNGNLS-DESLKKLAILCPNLEVIDLSHCLGITEEGIGE 440 (577)
Q Consensus 362 ~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~-~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~ 440 (577)
..+...|++|+.|.+..... ++.++.+.+.++.... +.........+++++.+.+..|. ..+.+...
T Consensus 314 ~~~~~~c~~l~~l~~~~~~~-----------c~~l~~~~l~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~-~~~~~~~~ 381 (482)
T KOG1947|consen 314 EALLKNCPNLRELKLLSLNG-----------CPSLTDLSLSGLLTLTSDDLAELILRSCPKLTDLSLSYCG-ISDLGLEL 381 (482)
T ss_pred HHHHHhCcchhhhhhhhcCC-----------CccHHHHHHHHhhccCchhHhHHHHhcCCCcchhhhhhhh-ccCcchHH
Confidence 77777777776655443211 3445555555544444 34455555666777777776664 55555444
Q ss_pred HHhhCCCCcEEEcccccccccccccccCCCceEEEccCCCCCHHHHHHHHHhCCCccEEecCCCCCCChhhHHHHHhhCC
Q 046157 441 ILKSCCEIKCLEIKRCRAVFDLGIDLELPKLEVLQASGSALNDHALKMIANTCSRILHLDLDNCLNVTTSGVKEVVEHCR 520 (577)
Q Consensus 441 ~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~c~~l~~~~l~~~~~~~~ 520 (577)
++.+|++|. . .+......+..++.|.+..|..+++.++......+.
T Consensus 382 ~l~gc~~l~-~---------------------------------~l~~~~~~~~~l~~L~l~~~~~~t~~~l~~~~~~~~ 427 (482)
T KOG1947|consen 382 SLRGCPNLT-E---------------------------------SLELRLCRSDSLRVLNLSDCRLVTDKGLRCLADSCS 427 (482)
T ss_pred HhcCCcccc-h---------------------------------HHHHHhccCCccceEecccCccccccchHHHhhhhh
Confidence 455555442 2 222222223348888888888888888777655578
Q ss_pred CCcEEEecCCCCCcHHHHHHHHHhCCCCceeccC
Q 046157 521 TLREINLRWCDEVNVDIVAWMVFSRPSLRKIIPP 554 (577)
Q Consensus 521 ~L~~L~l~~c~~~~~~~~~~~~~~~~~L~~l~~~ 554 (577)
.++.+++.+|+.++........... ......+.
T Consensus 428 ~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 460 (482)
T KOG1947|consen 428 NLKDLDLSGCRVITLKSLEGFASNC-DLISLDVG 460 (482)
T ss_pred ccccCCccCcccccchhhhhhhccc-cccccccc
Confidence 8888888888888877666655544 44444433
No 11
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=99.64 E-value=5.3e-16 Score=133.48 Aligned_cols=253 Identities=19% Similarity=0.270 Sum_probs=186.0
Q ss_pred cCcEEeccCCcccChhHHHHHHhcCCCCcEEEeccCCCCCHHHHHHH-HhcCCCccEEEecCCCCCCcchhHHHHhhhhc
Q 046157 188 RLKRINLSGNFFITDKSLMFLSSNLVLLREILIRDCDFITQSGISFA-MRNSPNLVSISVNGIGIPTIDSCFKESFAYAR 266 (577)
Q Consensus 188 ~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 266 (577)
.-+.+++.+ ..+....+..+.++ ....+.+-.. .+.+..+... ...-..++.++++...+ ........+..|.
T Consensus 137 lW~~lDl~~-r~i~p~~l~~l~~r--gV~v~Rlar~-~~~~prlae~~~~frsRlq~lDLS~s~i--t~stl~~iLs~C~ 210 (419)
T KOG2120|consen 137 LWQTLDLTG-RNIHPDVLGRLLSR--GVIVFRLARS-FMDQPRLAEHFSPFRSRLQHLDLSNSVI--TVSTLHGILSQCS 210 (419)
T ss_pred ceeeeccCC-CccChhHHHHHHhC--CeEEEEcchh-hhcCchhhhhhhhhhhhhHHhhcchhhe--eHHHHHHHHHHHH
Confidence 345666666 45555555555432 2233332211 1111111111 11224688888887654 2234556678999
Q ss_pred CCCEEEcCCCCCChHHHHHHHhcCCCCcEEEecCCCCCCHHHHHHHHhcCCCcCeeecccccccChHHHHHHHhcCCCCC
Q 046157 267 GLCEIDLSNSFISDELLRLLGEACLPLKKLVLSHCYNFTLAGISFLLSKYQSLEHLNLEAANFLEDESMIDLSKFLTSLN 346 (577)
Q Consensus 267 ~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~ 346 (577)
+|+.|.+++..++|.....+++ -.+|+.++++.|.+++..++.-++..|..|..|+++.|...++..-..+....++|+
T Consensus 211 kLk~lSlEg~~LdD~I~~~iAk-N~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~ 289 (419)
T KOG2120|consen 211 KLKNLSLEGLRLDDPIVNTIAK-NSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLT 289 (419)
T ss_pred hhhhccccccccCcHHHHHHhc-cccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhchhhh
Confidence 9999999999999988888887 689999999999999999999999999999999999998655554344445568999
Q ss_pred EEeecCCC-CCChHHHHHHHhhCCCCCeEEeeeccCCCCcccccccCCCCccEEEcCCCCCCCHHHHHHHHhhCCCccEE
Q 046157 347 FIDLGFCA-KLTNSTFFTILRECPLLSEIKMETTNLGLDDFTTPLVINPQVKSLHLARNGNLSDESLKKLAILCPNLEVI 425 (577)
Q Consensus 347 ~L~l~~~~-~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L 425 (577)
.|+++++. .+....+..+.++||+|.+|+++++..-..+....+.+++-|++|.++.|+.+....+..+.. .|.|.+|
T Consensus 290 ~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i~p~~~~~l~s-~psl~yL 368 (419)
T KOG2120|consen 290 QLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYDIIPETLLELNS-KPSLVYL 368 (419)
T ss_pred hhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeehhhhcCCChHHeeeecc-CcceEEE
Confidence 99999987 566678889999999999999999887666777888899999999999999887776665543 5999999
Q ss_pred ecCCCCCCCHHHHHHHHhhCCCCcE
Q 046157 426 DLSHCLGITEEGIGEILKSCCEIKC 450 (577)
Q Consensus 426 ~l~~~~~~~~~~~~~~~~~~~~L~~ 450 (577)
++.+| +++..+..+...+++|+.
T Consensus 369 dv~g~--vsdt~mel~~e~~~~lki 391 (419)
T KOG2120|consen 369 DVFGC--VSDTTMELLKEMLSHLKI 391 (419)
T ss_pred Eeccc--cCchHHHHHHHhCccccc
Confidence 99886 566666766777777653
No 12
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.60 E-value=7.5e-15 Score=161.45 Aligned_cols=346 Identities=15% Similarity=0.145 Sum_probs=176.6
Q ss_pred cCccCcEEeccCCcc-----cChhHHHHHHhcCCCCcEEEeccCCCCCHHHHHHHHhcCCCccEEEecCCCCCCcchhHH
Q 046157 185 KLKRLKRINLSGNFF-----ITDKSLMFLSSNLVLLREILIRDCDFITQSGISFAMRNSPNLVSISVNGIGIPTIDSCFK 259 (577)
Q Consensus 185 ~~~~L~~L~l~~~~~-----~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~ 259 (577)
++++|+.|.+..... ........+..-.++|+.|.+.+++.-.-. .. -...+|+.|++.++.+.. ..
T Consensus 556 ~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP---~~-f~~~~L~~L~L~~s~l~~----L~ 627 (1153)
T PLN03210 556 GMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMP---SN-FRPENLVKLQMQGSKLEK----LW 627 (1153)
T ss_pred cCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCCCCC---Cc-CCccCCcEEECcCccccc----cc
Confidence 577788887754210 000000111111345777777664321110 00 124678888888766532 23
Q ss_pred HHhhhhcCCCEEEcCCCCCChHHHHHHHhcCCCCcEEEecCCCCCCHHHHHHHHhcCCCcCeeecccccccChHHHHHHH
Q 046157 260 ESFAYARGLCEIDLSNSFISDELLRLLGEACLPLKKLVLSHCYNFTLAGISFLLSKYQSLEHLNLEAANFLEDESMIDLS 339 (577)
Q Consensus 260 ~~~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~ 339 (577)
..+..+++|+.++++++..... +.. ...+++|+.|++.+|.... .++..+..+++|+.|++++|..+..-. ...
T Consensus 628 ~~~~~l~~Lk~L~Ls~~~~l~~-ip~-ls~l~~Le~L~L~~c~~L~--~lp~si~~L~~L~~L~L~~c~~L~~Lp--~~i 701 (1153)
T PLN03210 628 DGVHSLTGLRNIDLRGSKNLKE-IPD-LSMATNLETLKLSDCSSLV--ELPSSIQYLNKLEDLDMSRCENLEILP--TGI 701 (1153)
T ss_pred cccccCCCCCEEECCCCCCcCc-CCc-cccCCcccEEEecCCCCcc--ccchhhhccCCCCEEeCCCCCCcCccC--CcC
Confidence 3446678888888877532111 111 2236788888888876543 233335667888888888876443211 111
Q ss_pred hcCCCCCEEeecCCCCCChHHHHHHHhhCCCCCeEEeeeccCCCCcccccccCCC-------------------------
Q 046157 340 KFLTSLNFIDLGFCAKLTNSTFFTILRECPLLSEIKMETTNLGLDDFTTPLVINP------------------------- 394 (577)
Q Consensus 340 ~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~------------------------- 394 (577)
.+++|+.|++++|..+.. +....++|+.|++.++.+..-. ....++
T Consensus 702 -~l~sL~~L~Lsgc~~L~~-----~p~~~~nL~~L~L~~n~i~~lP---~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~ 772 (1153)
T PLN03210 702 -NLKSLYRLNLSGCSRLKS-----FPDISTNISWLDLDETAIEEFP---SNLRLENLDELILCEMKSEKLWERVQPLTPL 772 (1153)
T ss_pred -CCCCCCEEeCCCCCCccc-----cccccCCcCeeecCCCcccccc---ccccccccccccccccchhhccccccccchh
Confidence 367888888888764321 1123457777777776643211 111233
Q ss_pred ------CccEEEcCCCCCCCHHHHHHHHhhCCCccEEecCCCCCCCHHHHHHHHhhCCCCcEEEcccccccccccccccC
Q 046157 395 ------QVKSLHLARNGNLSDESLKKLAILCPNLEVIDLSHCLGITEEGIGEILKSCCEIKCLEIKRCRAVFDLGIDLEL 468 (577)
Q Consensus 395 ------~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~ 468 (577)
+|+.|++++|..+... ..-...+++|+.|++++|..+... ... ..+++|+.|++++|..+.... ...
T Consensus 773 ~~~~~~sL~~L~Ls~n~~l~~l--P~si~~L~~L~~L~Ls~C~~L~~L--P~~-~~L~sL~~L~Ls~c~~L~~~p--~~~ 845 (1153)
T PLN03210 773 MTMLSPSLTRLFLSDIPSLVEL--PSSIQNLHKLEHLEIENCINLETL--PTG-INLESLESLDLSGCSRLRTFP--DIS 845 (1153)
T ss_pred hhhccccchheeCCCCCCcccc--ChhhhCCCCCCEEECCCCCCcCee--CCC-CCccccCEEECCCCCcccccc--ccc
Confidence 4555555544322221 111223455555555555433321 110 134555555555555443321 123
Q ss_pred CCceEEEccCCCCCHHHHHHHHHhCCCccEEecCCCCCCChhhHHHHHhhCCCCcEEEecCCCCCcHHHHH---------
Q 046157 469 PKLEVLQASGSALNDHALKMIANTCSRILHLDLDNCLNVTTSGVKEVVEHCRTLREINLRWCDEVNVDIVA--------- 539 (577)
Q Consensus 469 ~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~c~~l~~~~l~~~~~~~~~L~~L~l~~c~~~~~~~~~--------- 539 (577)
++|+.|++++|.++.... . ...+++|+.|++++|++++.... ....+++|+.+++++|+.+......
T Consensus 846 ~nL~~L~Ls~n~i~~iP~-s-i~~l~~L~~L~L~~C~~L~~l~~--~~~~L~~L~~L~l~~C~~L~~~~l~~~~~~~~~~ 921 (1153)
T PLN03210 846 TNISDLNLSRTGIEEVPW-W-IEKFSNLSFLDMNGCNNLQRVSL--NISKLKHLETVDFSDCGALTEASWNGSPSEVAMA 921 (1153)
T ss_pred cccCEeECCCCCCccChH-H-HhcCCCCCEEECCCCCCcCccCc--ccccccCCCeeecCCCcccccccCCCCchhhhhh
Confidence 466666666666653221 1 23467777777777777664322 2355677777777777766532110
Q ss_pred --HHHHhCCCCceeccCCCCCCChhhh
Q 046157 540 --WMVFSRPSLRKIIPPCGFAPTESQK 564 (577)
Q Consensus 540 --~~~~~~~~L~~l~~~~~~~~~~~~~ 564 (577)
......|....+.+..|+++.+...
T Consensus 922 ~~n~~~~~p~~~~l~f~nC~~L~~~a~ 948 (1153)
T PLN03210 922 TDNIHSKLPSTVCINFINCFNLDQEAL 948 (1153)
T ss_pred cccccccCCchhccccccccCCCchhh
Confidence 1112334444555666666655443
No 13
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.57 E-value=1.3e-14 Score=159.58 Aligned_cols=335 Identities=16% Similarity=0.192 Sum_probs=202.0
Q ss_pred CccCcEEeccCCcccChhHHHHHHhcCCCCcEEEeccCCCCCHHHHHHHHhcCCCccEEEecCCCCCCcchhHHHHhhhh
Q 046157 186 LKRLKRINLSGNFFITDKSLMFLSSNLVLLREILIRDCDFITQSGISFAMRNSPNLVSISVNGIGIPTIDSCFKESFAYA 265 (577)
Q Consensus 186 ~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 265 (577)
..+|+.|++.++ .+. .+..-...+++|+.|+++++..+...+ .+..+++|+.|++.++.. ...++..+.++
T Consensus 610 ~~~L~~L~L~~s-~l~--~L~~~~~~l~~Lk~L~Ls~~~~l~~ip---~ls~l~~Le~L~L~~c~~---L~~lp~si~~L 680 (1153)
T PLN03210 610 PENLVKLQMQGS-KLE--KLWDGVHSLTGLRNIDLRGSKNLKEIP---DLSMATNLETLKLSDCSS---LVELPSSIQYL 680 (1153)
T ss_pred ccCCcEEECcCc-ccc--ccccccccCCCCCEEECCCCCCcCcCC---ccccCCcccEEEecCCCC---ccccchhhhcc
Confidence 356778887764 221 122222457788888888765443221 134568888888887642 23445566778
Q ss_pred cCCCEEEcCCCCCChHHHHHHHhcCCCCcEEEecCCCCCCHHHHHHHHhcCCCcCeeecccccccChHHHHHHHhcCCCC
Q 046157 266 RGLCEIDLSNSFISDELLRLLGEACLPLKKLVLSHCYNFTLAGISFLLSKYQSLEHLNLEAANFLEDESMIDLSKFLTSL 345 (577)
Q Consensus 266 ~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L 345 (577)
++|+.|++++|..-......+ .+++|+.|.+.+|..... + .....+|+.|+++++. +.. +.... .+++|
T Consensus 681 ~~L~~L~L~~c~~L~~Lp~~i--~l~sL~~L~Lsgc~~L~~--~---p~~~~nL~~L~L~~n~-i~~--lP~~~-~l~~L 749 (1153)
T PLN03210 681 NKLEDLDMSRCENLEILPTGI--NLKSLYRLNLSGCSRLKS--F---PDISTNISWLDLDETA-IEE--FPSNL-RLENL 749 (1153)
T ss_pred CCCCEEeCCCCCCcCccCCcC--CCCCCCEEeCCCCCCccc--c---ccccCCcCeeecCCCc-ccc--ccccc-ccccc
Confidence 888888888763211111111 367888888888765331 1 1224578888888776 221 11111 25678
Q ss_pred CEEeecCCCC--CChH--HH-HHHHhhCCCCCeEEeeeccCCCCcccccccCCCCccEEEcCCCCCCCHHHHHHHHhhCC
Q 046157 346 NFIDLGFCAK--LTNS--TF-FTILRECPLLSEIKMETTNLGLDDFTTPLVINPQVKSLHLARNGNLSDESLKKLAILCP 420 (577)
Q Consensus 346 ~~L~l~~~~~--~~~~--~l-~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~ 420 (577)
+.|.+.++.. +... .+ ......+++|+.|++++|..... .+..+..+++|+.|++++|..+.... .. ..++
T Consensus 750 ~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~-lP~si~~L~~L~~L~Ls~C~~L~~LP--~~-~~L~ 825 (1153)
T PLN03210 750 DELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVE-LPSSIQNLHKLEHLEIENCINLETLP--TG-INLE 825 (1153)
T ss_pred ccccccccchhhccccccccchhhhhccccchheeCCCCCCccc-cChhhhCCCCCCEEECCCCCCcCeeC--CC-CCcc
Confidence 8777765431 0000 00 01122467899999998754332 35667889999999999997665421 11 1478
Q ss_pred CccEEecCCCCCCCHHHHHHHHhhCCCCcEEEccccccccccc-ccccCCCceEEEccCC-CCCHHHHHHHHHhCCCccE
Q 046157 421 NLEVIDLSHCLGITEEGIGEILKSCCEIKCLEIKRCRAVFDLG-IDLELPKLEVLQASGS-ALNDHALKMIANTCSRILH 498 (577)
Q Consensus 421 ~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~-~~~~~~~L~~L~l~~~-~i~~~~~~~l~~~~~~L~~ 498 (577)
+|+.|++++|..+.. +....++|+.|+++++. ++... ....+++|+.|++++| .+..... ....+++|+.
T Consensus 826 sL~~L~Ls~c~~L~~-----~p~~~~nL~~L~Ls~n~-i~~iP~si~~l~~L~~L~L~~C~~L~~l~~--~~~~L~~L~~ 897 (1153)
T PLN03210 826 SLESLDLSGCSRLRT-----FPDISTNISDLNLSRTG-IEEVPWWIEKFSNLSFLDMNGCNNLQRVSL--NISKLKHLET 897 (1153)
T ss_pred ccCEEECCCCCcccc-----ccccccccCEeECCCCC-CccChHHHhcCCCCCEEECCCCCCcCccCc--ccccccCCCe
Confidence 999999999976542 12234689999999886 44443 3457899999999985 4433111 1235689999
Q ss_pred EecCCCCCCChhhHHH-----------HHhhCCCCcEEEecCCCCCcHHHHHHHHHhCCCCceeccCC
Q 046157 499 LDLDNCLNVTTSGVKE-----------VVEHCRTLREINLRWCDEVNVDIVAWMVFSRPSLRKIIPPC 555 (577)
Q Consensus 499 L~l~~c~~l~~~~l~~-----------~~~~~~~L~~L~l~~c~~~~~~~~~~~~~~~~~L~~l~~~~ 555 (577)
+++++|.+++...+.. ....+|....+.+.+|.++..... ...-...+.+.+++
T Consensus 898 L~l~~C~~L~~~~l~~~~~~~~~~~~n~~~~~p~~~~l~f~nC~~L~~~a~---l~~~~~~~~~~l~g 962 (1153)
T PLN03210 898 VDFSDCGALTEASWNGSPSEVAMATDNIHSKLPSTVCINFINCFNLDQEAL---LQQQSIFKQLILSG 962 (1153)
T ss_pred eecCCCcccccccCCCCchhhhhhcccccccCCchhccccccccCCCchhh---hcccccceEEECCC
Confidence 9999999886432211 012345556678889988875432 22222345555654
No 14
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=99.56 E-value=4.3e-14 Score=143.72 Aligned_cols=255 Identities=28% Similarity=0.437 Sum_probs=170.9
Q ss_pred CCCChHHHHHHHhcCCCCcEEEecCCCCCCHHHHHHHHhcCCCcCeeecccc-cccChH--HHHHHHhcCCCCCEEeecC
Q 046157 276 SFISDELLRLLGEACLPLKKLVLSHCYNFTLAGISFLLSKYQSLEHLNLEAA-NFLEDE--SMIDLSKFLTSLNFIDLGF 352 (577)
Q Consensus 276 ~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~-~~~~~~--~~~~l~~~~~~L~~L~l~~ 352 (577)
..........+...++.|+.+.+.+|..+.+.++..+...++.|+.|+++++ ...... ....+...+++|+.|+++.
T Consensus 173 ~~~~~~~~~~l~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~ 252 (482)
T KOG1947|consen 173 SLLLDKILLRLLSSCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSG 252 (482)
T ss_pred ccccHHHHHHHHhhCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhh
Confidence 3455555556666578888888888877777666666777888888888762 222222 2333555567788888887
Q ss_pred CCCCChHHHHHHHhhCCCCCeEEeeeccCCCCcccccccCCCCccEEEcCCCCCCCHHHHHHHHhhCCCccEEecCCCCC
Q 046157 353 CAKLTNSTFFTILRECPLLSEIKMETTNLGLDDFTTPLVINPQVKSLHLARNGNLSDESLKKLAILCPNLEVIDLSHCLG 432 (577)
Q Consensus 353 ~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~ 432 (577)
+..+++.++..++..|++|+.| .+.+|..+++.++..++..|++|++|++++|..
T Consensus 253 ~~~isd~~l~~l~~~c~~L~~L-------------------------~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~ 307 (482)
T KOG1947|consen 253 CGLVTDIGLSALASRCPNLETL-------------------------SLSNCSNLTDEGLVSIAERCPSLRELDLSGCHG 307 (482)
T ss_pred hhccCchhHHHHHhhCCCcceE-------------------------ccCCCCccchhHHHHHHHhcCcccEEeeecCcc
Confidence 7777777777777666655444 444455578888888888888899998888888
Q ss_pred CCHHHHHHHHhhCCCCcEEEcccccccccccccccCCCceEEEccCCC-CC-HHHHHHHHHhCCCccEEecCCCCCCChh
Q 046157 433 ITEEGIGEILKSCCEIKCLEIKRCRAVFDLGIDLELPKLEVLQASGSA-LN-DHALKMIANTCSRILHLDLDNCLNVTTS 510 (577)
Q Consensus 433 ~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~-i~-~~~~~~l~~~~~~L~~L~l~~c~~l~~~ 510 (577)
+++.++..+..+|++|+.|.+..+.. ++.++.+.+.+.. .. +.........|++++.+.+..|. +++.
T Consensus 308 ~~d~~l~~~~~~c~~l~~l~~~~~~~---------c~~l~~~~l~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~-~~~~ 377 (482)
T KOG1947|consen 308 LTDSGLEALLKNCPNLRELKLLSLNG---------CPSLTDLSLSGLLTLTSDDLAELILRSCPKLTDLSLSYCG-ISDL 377 (482)
T ss_pred chHHHHHHHHHhCcchhhhhhhhcCC---------CccHHHHHHHHhhccCchhHhHHHHhcCCCcchhhhhhhh-ccCc
Confidence 88888888888888888876655542 3333333333321 11 23334444455555555555554 4444
Q ss_pred hHHHHHhhCC--------------CCcEEEecCCCCCcHHHHHHHHHhCCCCceeccCCCCCCChhhhh
Q 046157 511 GVKEVVEHCR--------------TLREINLRWCDEVNVDIVAWMVFSRPSLRKIIPPCGFAPTESQKN 565 (577)
Q Consensus 511 ~l~~~~~~~~--------------~L~~L~l~~c~~~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~ 565 (577)
+...+..+|+ +++.|+++.|..+++..+......+..++.+.+..+..++....+
T Consensus 378 ~~~~~l~gc~~l~~~l~~~~~~~~~l~~L~l~~~~~~t~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~ 446 (482)
T KOG1947|consen 378 GLELSLRGCPNLTESLELRLCRSDSLRVLNLSDCRLVTDKGLRCLADSCSNLKDLDLSGCRVITLKSLE 446 (482)
T ss_pred chHHHhcCCcccchHHHHHhccCCccceEecccCccccccchHHHhhhhhccccCCccCcccccchhhh
Confidence 4433444444 359999999999999888887777899999999988777766543
No 15
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.51 E-value=2.5e-16 Score=149.08 Aligned_cols=365 Identities=18% Similarity=0.203 Sum_probs=173.4
Q ss_pred CccEEeccCCCCcChhhHHHHHHcCCCCCeeecCCCccccchhHHHHHhhcCCCcEeeccCCCCCCCCCCcCcccccccc
Q 046157 92 DLESLNISNLKSFPFMGLKELGTKMKNLKELNCSKNFSFRDSDLIAVAETCEFLEVLDISYPENDSSFLPQGFQNIQSFS 171 (577)
Q Consensus 92 ~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~ 171 (577)
-++-.+++++. ++...++.-.+.++.++-|.|... .-..+..-..++.+|++|.+..|.
T Consensus 8 FVrGvDfsgND-Fsg~~FP~~v~qMt~~~WLkLnrt---~L~~vPeEL~~lqkLEHLs~~HN~----------------- 66 (1255)
T KOG0444|consen 8 FVRGVDFSGND-FSGDRFPHDVEQMTQMTWLKLNRT---KLEQVPEELSRLQKLEHLSMAHNQ----------------- 66 (1255)
T ss_pred eeecccccCCc-CCCCcCchhHHHhhheeEEEechh---hhhhChHHHHHHhhhhhhhhhhhh-----------------
Confidence 34455555543 222222233344566666665432 111222333456777778777776
Q ss_pred cccCHHHHHHHHHcCccCcEEeccCCcccChhHHHHHHhcCCCCcEEEeccCCCCCHHHHHHHHhcCCCccEEEecCCCC
Q 046157 172 FYITDSGIEALSMKLKRLKRINLSGNFFITDKSLMFLSSNLVLLREILIRDCDFITQSGISFAMRNSPNLVSISVNGIGI 251 (577)
Q Consensus 172 ~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 251 (577)
+.. ....+. .+|.|+.+.+..+ .+...+++.-..++..|+.|+++... +.. ++.-+..-.++-.|+++++.+
T Consensus 67 --L~~-vhGELs-~Lp~LRsv~~R~N-~LKnsGiP~diF~l~dLt~lDLShNq-L~E--vP~~LE~AKn~iVLNLS~N~I 138 (1255)
T KOG0444|consen 67 --LIS-VHGELS-DLPRLRSVIVRDN-NLKNSGIPTDIFRLKDLTILDLSHNQ-LRE--VPTNLEYAKNSIVLNLSYNNI 138 (1255)
T ss_pred --hHh-hhhhhc-cchhhHHHhhhcc-ccccCCCCchhcccccceeeecchhh-hhh--cchhhhhhcCcEEEEcccCcc
Confidence 211 112222 4667777777664 33333333222336666666666521 111 112223334555666666655
Q ss_pred CCcchhHHHHhhhhcCCCEEEcCCCCCChHHHHHHHhcCCCCcEEEecCCCCCCHHHHHHHHhcCCCcCeeecccccccC
Q 046157 252 PTIDSCFKESFAYARGLCEIDLSNSFISDELLRLLGEACLPLKKLVLSHCYNFTLAGISFLLSKYQSLEHLNLEAANFLE 331 (577)
Q Consensus 252 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~ 331 (577)
..++.... .++..|-.|+|+.|.+.. ++.....+..|+.|.+++++ +.
T Consensus 139 etIPn~lf---inLtDLLfLDLS~NrLe~----------------------------LPPQ~RRL~~LqtL~Ls~NP-L~ 186 (1255)
T KOG0444|consen 139 ETIPNSLF---INLTDLLFLDLSNNRLEM----------------------------LPPQIRRLSMLQTLKLSNNP-LN 186 (1255)
T ss_pred ccCCchHH---HhhHhHhhhccccchhhh----------------------------cCHHHHHHhhhhhhhcCCCh-hh
Confidence 44443322 233444555555554321 11112223344444444443 22
Q ss_pred hHHHHHHHhcCCCCCEEeecCCCCCChHHHHHHHhhCCCCCeEEeeeccCCCCcccccccCCCCccEEEcCCCCCCCHHH
Q 046157 332 DESMIDLSKFLTSLNFIDLGFCAKLTNSTFFTILRECPLLSEIKMETTNLGLDDFTTPLVINPQVKSLHLARNGNLSDES 411 (577)
Q Consensus 332 ~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~ 411 (577)
...+..+.. +.+|+.|.+++.. -+-..+..-+..+.||..++++.|+... .+..+.+.++|+.|+++++. ++...
T Consensus 187 hfQLrQLPs-mtsL~vLhms~Tq-RTl~N~Ptsld~l~NL~dvDlS~N~Lp~--vPecly~l~~LrrLNLS~N~-iteL~ 261 (1255)
T KOG0444|consen 187 HFQLRQLPS-MTSLSVLHMSNTQ-RTLDNIPTSLDDLHNLRDVDLSENNLPI--VPECLYKLRNLRRLNLSGNK-ITELN 261 (1255)
T ss_pred HHHHhcCcc-chhhhhhhccccc-chhhcCCCchhhhhhhhhccccccCCCc--chHHHhhhhhhheeccCcCc-eeeee
Confidence 222221111 2333334343321 1111111112234456666666655422 24445566677777777655 44322
Q ss_pred HHHHHhhCCCccEEecCCCCCCCHHHHHHHHhhCCCCcEEEccccccccccccc---ccCCCceEEEccCCCCCHHHHHH
Q 046157 412 LKKLAILCPNLEVIDLSHCLGITEEGIGEILKSCCEIKCLEIKRCRAVFDLGID---LELPKLEVLQASGSALNDHALKM 488 (577)
Q Consensus 412 l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~---~~~~~L~~L~l~~~~i~~~~~~~ 488 (577)
+ -...+.+|++|+++.+ .++. +...+..+++|++|.+.+++ ++-.++. ..+-+|+.+..++|.+.- ..+.
T Consensus 262 ~--~~~~W~~lEtLNlSrN-QLt~--LP~avcKL~kL~kLy~n~Nk-L~FeGiPSGIGKL~~Levf~aanN~LEl-VPEg 334 (1255)
T KOG0444|consen 262 M--TEGEWENLETLNLSRN-QLTV--LPDAVCKLTKLTKLYANNNK-LTFEGIPSGIGKLIQLEVFHAANNKLEL-VPEG 334 (1255)
T ss_pred c--cHHHHhhhhhhccccc-hhcc--chHHHhhhHHHHHHHhccCc-ccccCCccchhhhhhhHHHHhhcccccc-Cchh
Confidence 2 1223567777777776 3332 33445566777777776665 4433322 245566666666654421 1122
Q ss_pred HHHhCCCccEEecCCCCCCChhhHHHHHhhCCCCcEEEecCCCCC
Q 046157 489 IANTCSRILHLDLDNCLNVTTSGVKEVVEHCRTLREINLRWCDEV 533 (577)
Q Consensus 489 l~~~~~~L~~L~l~~c~~l~~~~l~~~~~~~~~L~~L~l~~c~~~ 533 (577)
+. .|+.|+.|.++.+.-++ +...+.-++.|+.|++...|++
T Consensus 335 lc-RC~kL~kL~L~~NrLiT---LPeaIHlL~~l~vLDlreNpnL 375 (1255)
T KOG0444|consen 335 LC-RCVKLQKLKLDHNRLIT---LPEAIHLLPDLKVLDLRENPNL 375 (1255)
T ss_pred hh-hhHHHHHhcccccceee---chhhhhhcCCcceeeccCCcCc
Confidence 22 36777777777655454 2333455677777877777765
No 16
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.45 E-value=1.5e-15 Score=143.92 Aligned_cols=369 Identities=18% Similarity=0.150 Sum_probs=236.3
Q ss_pred cCCCcEeeccCCCCCCCCCCcCcccccccccccCHHHHHHHHHcCccCcEEeccCCcccChhHHHHHHhcCCCCcEEEec
Q 046157 142 CEFLEVLDISYPENDSSFLPQGFQNIQSFSFYITDSGIEALSMKLKRLKRINLSGNFFITDKSLMFLSSNLVLLREILIR 221 (577)
Q Consensus 142 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~ 221 (577)
+|-.+-+++++|+ ++...+..-.+.+..++.|.+.. ..+ ..++.-...+.+|++|.+.
T Consensus 6 LpFVrGvDfsgND-------------------Fsg~~FP~~v~qMt~~~WLkLnr-t~L--~~vPeEL~~lqkLEHLs~~ 63 (1255)
T KOG0444|consen 6 LPFVRGVDFSGND-------------------FSGDRFPHDVEQMTQMTWLKLNR-TKL--EQVPEELSRLQKLEHLSMA 63 (1255)
T ss_pred cceeecccccCCc-------------------CCCCcCchhHHHhhheeEEEech-hhh--hhChHHHHHHhhhhhhhhh
Confidence 4556677788877 44333433344567788888865 222 2233333457888888887
Q ss_pred cCCCCCHHHHHHHHhcCCCccEEEecCCCCCCcchhHHHHhhhhcCCCEEEcCCCCCChHHHHHHHhcCCCCcEEEecCC
Q 046157 222 DCDFITQSGISFAMRNSPNLVSISVNGIGIPTIDSCFKESFAYARGLCEIDLSNSFISDELLRLLGEACLPLKKLVLSHC 301 (577)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~ 301 (577)
...-. .+..-+..+|.|+++.+..+...+ ..++..+..+..|+.|+|+.|.+..- ...+ ..-.++-.|+++++
T Consensus 64 HN~L~---~vhGELs~Lp~LRsv~~R~N~LKn--sGiP~diF~l~dLt~lDLShNqL~Ev-P~~L-E~AKn~iVLNLS~N 136 (1255)
T KOG0444|consen 64 HNQLI---SVHGELSDLPRLRSVIVRDNNLKN--SGIPTDIFRLKDLTILDLSHNQLREV-PTNL-EYAKNSIVLNLSYN 136 (1255)
T ss_pred hhhhH---hhhhhhccchhhHHHhhhcccccc--CCCCchhcccccceeeecchhhhhhc-chhh-hhhcCcEEEEcccC
Confidence 64322 122334567888888888776522 22455566788899999988865431 1111 22467778888876
Q ss_pred CCCCHHHHHHHHhcCCCcCeeecccccccChHHHHHHHhcCCCCCEEeecCCCCCChHHHHHHHhhCCCCCeEEeeeccC
Q 046157 302 YNFTLAGISFLLSKYQSLEHLNLEAANFLEDESMIDLSKFLTSLNFIDLGFCAKLTNSTFFTILRECPLLSEIKMETTNL 381 (577)
Q Consensus 302 ~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~ 381 (577)
...+... .++-.+..|-.|+++++.. +.+..-...+.+|++|.+++++ +....+.++ ..+.+|+.|.+++..-
T Consensus 137 ~IetIPn--~lfinLtDLLfLDLS~NrL---e~LPPQ~RRL~~LqtL~Ls~NP-L~hfQLrQL-PsmtsL~vLhms~TqR 209 (1255)
T KOG0444|consen 137 NIETIPN--SLFINLTDLLFLDLSNNRL---EMLPPQIRRLSMLQTLKLSNNP-LNHFQLRQL-PSMTSLSVLHMSNTQR 209 (1255)
T ss_pred ccccCCc--hHHHhhHhHhhhccccchh---hhcCHHHHHHhhhhhhhcCCCh-hhHHHHhcC-ccchhhhhhhcccccc
Confidence 5433111 1233455677788888762 2222223336678999998855 222222222 2345677778888776
Q ss_pred CCCcccccccCCCCccEEEcCCCCCCCHHHHHHHHhhCCCccEEecCCCCCCCHHHHHHHHhhCCCCcEEEccccccccc
Q 046157 382 GLDDFTTPLVINPQVKSLHLARNGNLSDESLKKLAILCPNLEVIDLSHCLGITEEGIGEILKSCCEIKCLEIKRCRAVFD 461 (577)
Q Consensus 382 ~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~ 461 (577)
....++..+..+.+|+.++++.+. +.. +..-.-..++|+.|+++++ .++... .-...+.+|+.|+++.+....-
T Consensus 210 Tl~N~Ptsld~l~NL~dvDlS~N~-Lp~--vPecly~l~~LrrLNLS~N-~iteL~--~~~~~W~~lEtLNlSrNQLt~L 283 (1255)
T KOG0444|consen 210 TLDNIPTSLDDLHNLRDVDLSENN-LPI--VPECLYKLRNLRRLNLSGN-KITELN--MTEGEWENLETLNLSRNQLTVL 283 (1255)
T ss_pred hhhcCCCchhhhhhhhhccccccC-CCc--chHHHhhhhhhheeccCcC-ceeeee--ccHHHHhhhhhhccccchhccc
Confidence 666678888889999999999765 332 1222234689999999997 565532 2246678999999999884333
Q ss_pred ccccccCCCceEEEccCCCCCHHHHHHHHHhCCCccEEecCCCCCCChhhHHHHHhhCCCCcEEEecCCCCCcHHHHHHH
Q 046157 462 LGIDLELPKLEVLQASGSALNDHALKMIANTCSRILHLDLDNCLNVTTSGVKEVVEHCRTLREINLRWCDEVNVDIVAWM 541 (577)
Q Consensus 462 ~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~c~~l~~~~l~~~~~~~~~L~~L~l~~c~~~~~~~~~~~ 541 (577)
.+....+++|+.|.+.+|.++-+++.+-...+.+|+.+...++ ++.. +..-+..|+.|+.|.+....-++ ++.-
T Consensus 284 P~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN-~LEl--VPEglcRC~kL~kL~L~~NrLiT---LPea 357 (1255)
T KOG0444|consen 284 PDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANN-KLEL--VPEGLCRCVKLQKLKLDHNRLIT---LPEA 357 (1255)
T ss_pred hHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhcc-cccc--CchhhhhhHHHHHhcccccceee---chhh
Confidence 3455688999999999999888777665556778888888875 3432 12224679999999988876665 4455
Q ss_pred HHhCCCCceeccCCCCC
Q 046157 542 VFSRPSLRKIIPPCGFA 558 (577)
Q Consensus 542 ~~~~~~L~~l~~~~~~~ 558 (577)
+.-+|.|+.|++..+..
T Consensus 358 IHlL~~l~vLDlreNpn 374 (1255)
T KOG0444|consen 358 IHLLPDLKVLDLRENPN 374 (1255)
T ss_pred hhhcCCcceeeccCCcC
Confidence 56689999998876443
No 17
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.45 E-value=8.3e-12 Score=110.65 Aligned_cols=208 Identities=24% Similarity=0.338 Sum_probs=124.9
Q ss_pred CCCCcEEEecCCCCC--CHHHHHHHHhcCCCcCeeecccccccChHHHHHHHh------------cCCCCCEEeecCCC-
Q 046157 290 CLPLKKLVLSHCYNF--TLAGISFLLSKYQSLEHLNLEAANFLEDESMIDLSK------------FLTSLNFIDLGFCA- 354 (577)
Q Consensus 290 ~~~L~~L~l~~~~~~--~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~------------~~~~L~~L~l~~~~- 354 (577)
+|+|+.++++.+... ...++..+++++..|++|.+.+|. +....-..+.. .-+.|+.+....+.
T Consensus 91 ~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~G-lg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrl 169 (382)
T KOG1909|consen 91 CPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCG-LGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRL 169 (382)
T ss_pred CCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCC-CChhHHHHHHHHHHHHHHHhccCCCcceEEEEeecccc
Confidence 556666666664322 234555667777788888887776 44443333221 23567777766543
Q ss_pred -CCChHHHHHHHhhCCCCCeEEeeeccCCCCcccccccCCCCccEEEcCCCCCCCHHHHHHHHhhCCCccEEecCCCCCC
Q 046157 355 -KLTNSTFFTILRECPLLSEIKMETTNLGLDDFTTPLVINPQVKSLHLARNGNLSDESLKKLAILCPNLEVIDLSHCLGI 433 (577)
Q Consensus 355 -~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~~ 433 (577)
.-+...+....+.+|.|+.+.+..|.+.... + ..+..-..+||+|++|++.++ .+
T Consensus 170 en~ga~~~A~~~~~~~~leevr~~qN~I~~eG---------------------~--~al~eal~~~~~LevLdl~DN-tf 225 (382)
T KOG1909|consen 170 ENGGATALAEAFQSHPTLEEVRLSQNGIRPEG---------------------V--TALAEALEHCPHLEVLDLRDN-TF 225 (382)
T ss_pred ccccHHHHHHHHHhccccceEEEecccccCch---------------------h--HHHHHHHHhCCcceeeecccc-hh
Confidence 2223344555566777777777777654433 1 122223346777777777776 24
Q ss_pred CHH---HHHHHHhhCCCCcEEEccccccccccc-------ccccCCCceEEEccCCCCCHHHHHHHHH---hCCCccEEe
Q 046157 434 TEE---GIGEILKSCCEIKCLEIKRCRAVFDLG-------IDLELPKLEVLQASGSALNDHALKMIAN---TCSRILHLD 500 (577)
Q Consensus 434 ~~~---~~~~~~~~~~~L~~L~l~~~~~l~~~~-------~~~~~~~L~~L~l~~~~i~~~~~~~l~~---~~~~L~~L~ 500 (577)
+.. .+...+..+|+|+.|++++|- +.+.+ +.-..|.|+.|.+.+|.++.++...+.. .-|.|++|+
T Consensus 226 t~egs~~LakaL~s~~~L~El~l~dcl-l~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLn 304 (382)
T KOG1909|consen 226 TLEGSVALAKALSSWPHLRELNLGDCL-LENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLN 304 (382)
T ss_pred hhHHHHHHHHHhcccchheeecccccc-cccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhc
Confidence 333 344445567777788887776 44433 1125788888888888888765544332 357888888
Q ss_pred cCCCCCC--ChhhHHHHHhhCCCCcE
Q 046157 501 LDNCLNV--TTSGVKEVVEHCRTLRE 524 (577)
Q Consensus 501 l~~c~~l--~~~~l~~~~~~~~~L~~ 524 (577)
|++|. + .+.++..+...++....
T Consensus 305 LngN~-l~e~de~i~ei~~~~~~~~~ 329 (382)
T KOG1909|consen 305 LNGNR-LGEKDEGIDEIASKFDTAHV 329 (382)
T ss_pred CCccc-ccccchhHHHHHHhcccccc
Confidence 88874 6 66777777766644333
No 18
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.37 E-value=7.5e-12 Score=110.91 Aligned_cols=263 Identities=19% Similarity=0.263 Sum_probs=130.2
Q ss_pred HHHhhhhcCCCEEEcCCCCCChHHHHHHHhcC---CCCcEEEecCCCCCC--H------HHHHHHHhcCCCcCeeecccc
Q 046157 259 KESFAYARGLCEIDLSNSFISDELLRLLGEAC---LPLKKLVLSHCYNFT--L------AGISFLLSKYQSLEHLNLEAA 327 (577)
Q Consensus 259 ~~~~~~~~~L~~L~l~~~~~~~~~l~~l~~~~---~~L~~L~l~~~~~~~--~------~~l~~~~~~~~~L~~L~l~~~ 327 (577)
...+.....++.++|+++.+..+....+...+ ++|+..++++-.... + ..+...+..+|+|+.|+++.+
T Consensus 23 ~~~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDN 102 (382)
T KOG1909|consen 23 EEELEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDN 102 (382)
T ss_pred HHHhcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeecccc
Confidence 33444556667777777776666655555443 334443333311100 0 011122334455555555555
Q ss_pred cccChHHHHHHHhcCCCCCEEeecCCCCCChHHHHHHHhhCCCCCeEEeeeccCCCCc------------ccccccCCCC
Q 046157 328 NFLEDESMIDLSKFLTSLNFIDLGFCAKLTNSTFFTILRECPLLSEIKMETTNLGLDD------------FTTPLVINPQ 395 (577)
Q Consensus 328 ~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~------------~~~~~~~~~~ 395 (577)
- +...++ .++..+++.|.+|++|.+.+|+++... ...-...-++
T Consensus 103 A-~G~~g~-----------------------~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~ 158 (382)
T KOG1909|consen 103 A-FGPKGI-----------------------RGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPK 158 (382)
T ss_pred c-cCccch-----------------------HHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcc
Confidence 4 222222 233334444444444444444443332 0111244567
Q ss_pred ccEEEcCCCCCCCHHH---HHHHHhhCCCccEEecCCCCCCCHHHH---HHHHhhCCCCcEEEcccccccccccc-----
Q 046157 396 VKSLHLARNGNLSDES---LKKLAILCPNLEVIDLSHCLGITEEGI---GEILKSCCEIKCLEIKRCRAVFDLGI----- 464 (577)
Q Consensus 396 L~~L~l~~~~~l~~~~---l~~l~~~~~~L~~L~l~~~~~~~~~~~---~~~~~~~~~L~~L~l~~~~~l~~~~~----- 464 (577)
|+.+..++|. +.+.+ +....+..|.|+.+.++.+ .+...++ ..-+..|++|+.|++..|..-...+.
T Consensus 159 Lrv~i~~rNr-len~ga~~~A~~~~~~~~leevr~~qN-~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~Laka 236 (382)
T KOG1909|consen 159 LRVFICGRNR-LENGGATALAEAFQSHPTLEEVRLSQN-GIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKA 236 (382)
T ss_pred eEEEEeeccc-cccccHHHHHHHHHhccccceEEEecc-cccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHH
Confidence 7777777665 43333 3334456678888888776 3443333 33456777777777777763332221
Q ss_pred cccCCCceEEEccCCCCCHHHHHHH----HHhCCCccEEecCCCCCCChhhHHHHH---hhCCCCcEEEecCCCCC-cHH
Q 046157 465 DLELPKLEVLQASGSALNDHALKMI----ANTCSRILHLDLDNCLNVTTSGVKEVV---EHCRTLREINLRWCDEV-NVD 536 (577)
Q Consensus 465 ~~~~~~L~~L~l~~~~i~~~~~~~l----~~~~~~L~~L~l~~c~~l~~~~l~~~~---~~~~~L~~L~l~~c~~~-~~~ 536 (577)
...+|+|+.|.++.|.+.+.+..++ .+..|+|+.|.+.+| .++..+...+. ..-|.|+.|++++|.-- .++
T Consensus 237 L~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gN-eIt~da~~~la~~~~ek~dL~kLnLngN~l~e~de 315 (382)
T KOG1909|consen 237 LSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGN-EITRDAALALAACMAEKPDLEKLNLNGNRLGEKDE 315 (382)
T ss_pred hcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcc-hhHHHHHHHHHHHHhcchhhHHhcCCcccccccch
Confidence 1245566666666666655443333 234456666666664 35544443332 22456666666666321 334
Q ss_pred HHHHHHHhCCCC
Q 046157 537 IVAWMVFSRPSL 548 (577)
Q Consensus 537 ~~~~~~~~~~~L 548 (577)
.+..+....+..
T Consensus 316 ~i~ei~~~~~~~ 327 (382)
T KOG1909|consen 316 GIDEIASKFDTA 327 (382)
T ss_pred hHHHHHHhcccc
Confidence 444444444333
No 19
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.30 E-value=3.1e-13 Score=134.25 Aligned_cols=131 Identities=21% Similarity=0.244 Sum_probs=71.0
Q ss_pred CCCCccEEEcCCCCCCCHHHHHHHHhhCCCccEEecCCCCCCCHHHHHHHHhhCCCCcEEEccccccccccc-ccccCCC
Q 046157 392 INPQVKSLHLARNGNLSDESLKKLAILCPNLEVIDLSHCLGITEEGIGEILKSCCEIKCLEIKRCRAVFDLG-IDLELPK 470 (577)
Q Consensus 392 ~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~-~~~~~~~ 470 (577)
.++.|+.|++.++. ++|..+..+. .+++|+.|+++++ .+..-. ...+.+++.|+.|++++|+ ++..+ ....++.
T Consensus 357 ~~~~Lq~LylanN~-Ltd~c~p~l~-~~~hLKVLhLsyN-rL~~fp-as~~~kle~LeeL~LSGNk-L~~Lp~tva~~~~ 431 (1081)
T KOG0618|consen 357 NHAALQELYLANNH-LTDSCFPVLV-NFKHLKVLHLSYN-RLNSFP-ASKLRKLEELEELNLSGNK-LTTLPDTVANLGR 431 (1081)
T ss_pred hhHHHHHHHHhcCc-ccccchhhhc-cccceeeeeeccc-ccccCC-HHHHhchHHhHHHhcccch-hhhhhHHHHhhhh
Confidence 34556666666654 5555555333 4567777777765 222111 1224556667777777776 44433 3445666
Q ss_pred ceEEEccCCCCCHHHHHHHHHhCCCccEEecCCCCCCChhhHHHHHhhCCCCcEEEecCCCC
Q 046157 471 LEVLQASGSALNDHALKMIANTCSRILHLDLDNCLNVTTSGVKEVVEHCRTLREINLRWCDE 532 (577)
Q Consensus 471 L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~c~~l~~~~l~~~~~~~~~L~~L~l~~c~~ 532 (577)
|++|...+|.+..-. .++ ..+.|+.+|++. .+++...+..... .|+|++|+++|..+
T Consensus 432 L~tL~ahsN~l~~fP--e~~-~l~qL~~lDlS~-N~L~~~~l~~~~p-~p~LkyLdlSGN~~ 488 (1081)
T KOG0618|consen 432 LHTLRAHSNQLLSFP--ELA-QLPQLKVLDLSC-NNLSEVTLPEALP-SPNLKYLDLSGNTR 488 (1081)
T ss_pred hHHHhhcCCceeech--hhh-hcCcceEEeccc-chhhhhhhhhhCC-CcccceeeccCCcc
Confidence 666666666554322 222 246677777764 4566544443321 25677777777554
No 20
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.25 E-value=1.8e-12 Score=118.08 Aligned_cols=163 Identities=17% Similarity=0.077 Sum_probs=72.5
Q ss_pred hcCCCccEEEecCCCCCCcchhHHHHhhhhcCCCEEEcCCCCCC-hHHHHHHHhcCCCCcEEEecCCCCCCHHHHHHHHh
Q 046157 236 RNSPNLVSISVNGIGIPTIDSCFKESFAYARGLCEIDLSNSFIS-DELLRLLGEACLPLKKLVLSHCYNFTLAGISFLLS 314 (577)
Q Consensus 236 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~ 314 (577)
..+.+|+++.+.++........ .....+++++.|+|+.|-+. -..+..++..+|+|+.|+++.+......+- ....
T Consensus 118 sn~kkL~~IsLdn~~V~~~~~~--~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s-~~~~ 194 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVEDAGIE--EYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISS-NTTL 194 (505)
T ss_pred hhHHhhhheeecCccccccchh--hhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccc-cchh
Confidence 3456666777766554222211 34455666666666665322 233445555556666666555422110000 0011
Q ss_pred cCCCcCeeecccccccChHHHHHHHhcCCCCCEEeecCCCCCChHHHHHHHhhCCCCCeEEeeeccCCCCcccccccCCC
Q 046157 315 KYQSLEHLNLEAANFLEDESMIDLSKFLTSLNFIDLGFCAKLTNSTFFTILRECPLLSEIKMETTNLGLDDFTTPLVINP 394 (577)
Q Consensus 315 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 394 (577)
.++.|+.|.++.|. ++...+..+...+|+|+.|.+..+..+...... ...+..|++|+|++|.+...+.......+|
T Consensus 195 ~l~~lK~L~l~~CG-ls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~--~~i~~~L~~LdLs~N~li~~~~~~~~~~l~ 271 (505)
T KOG3207|consen 195 LLSHLKQLVLNSCG-LSWKDVQWILLTFPSLEVLYLEANEIILIKATS--TKILQTLQELDLSNNNLIDFDQGYKVGTLP 271 (505)
T ss_pred hhhhhheEEeccCC-CCHHHHHHHHHhCCcHHHhhhhcccccceecch--hhhhhHHhhccccCCccccccccccccccc
Confidence 23455555555555 444455555444555555555443211111000 011234455555555444433334444455
Q ss_pred CccEEEcCCC
Q 046157 395 QVKSLHLARN 404 (577)
Q Consensus 395 ~L~~L~l~~~ 404 (577)
.|+.|.++.+
T Consensus 272 ~L~~Lnls~t 281 (505)
T KOG3207|consen 272 GLNQLNLSST 281 (505)
T ss_pred chhhhhcccc
Confidence 5555554443
No 21
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.20 E-value=8.3e-13 Score=131.29 Aligned_cols=150 Identities=19% Similarity=0.250 Sum_probs=106.2
Q ss_pred CCCCCeEEeeeccCCCCcccccccCCCCccEEEcCCCC--CCCHHHHHHHHhhCCCccEEecCCCCCCCHHHHHHHHhhC
Q 046157 368 CPLLSEIKMETTNLGLDDFTTPLVINPQVKSLHLARNG--NLSDESLKKLAILCPNLEVIDLSHCLGITEEGIGEILKSC 445 (577)
Q Consensus 368 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~--~l~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 445 (577)
.+.|+.|++.+|.++... ...+..+++||.|++++++ .+.+..+ ..++.||.|+++++ .++. +..-+..|
T Consensus 358 ~~~Lq~LylanN~Ltd~c-~p~l~~~~hLKVLhLsyNrL~~fpas~~----~kle~LeeL~LSGN-kL~~--Lp~tva~~ 429 (1081)
T KOG0618|consen 358 HAALQELYLANNHLTDSC-FPVLVNFKHLKVLHLSYNRLNSFPASKL----RKLEELEELNLSGN-KLTT--LPDTVANL 429 (1081)
T ss_pred hHHHHHHHHhcCcccccc-hhhhccccceeeeeecccccccCCHHHH----hchHHhHHHhcccc-hhhh--hhHHHHhh
Confidence 445788888888887776 7778899999999999985 2333322 35688999999997 4543 33557788
Q ss_pred CCCcEEEcccccccccccccccCCCceEEEccCCCCCHHHHHHHHHhCCCccEEecCCCCCCChhhHHHHHhhCCCCcEE
Q 046157 446 CEIKCLEIKRCRAVFDLGIDLELPKLEVLQASGSALNDHALKMIANTCSRILHLDLDNCLNVTTSGVKEVVEHCRTLREI 525 (577)
Q Consensus 446 ~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~c~~l~~~~l~~~~~~~~~L~~L 525 (577)
+.|+.|...+|. +....-...+|.|+.+|++.|+++...+..... -++|++|+++++.++..+ ...+..+..+..+
T Consensus 430 ~~L~tL~ahsN~-l~~fPe~~~l~qL~~lDlS~N~L~~~~l~~~~p-~p~LkyLdlSGN~~l~~d--~~~l~~l~~l~~~ 505 (1081)
T KOG0618|consen 430 GRLHTLRAHSNQ-LLSFPELAQLPQLKVLDLSCNNLSEVTLPEALP-SPNLKYLDLSGNTRLVFD--HKTLKVLKSLSQM 505 (1081)
T ss_pred hhhHHHhhcCCc-eeechhhhhcCcceEEecccchhhhhhhhhhCC-CcccceeeccCCcccccc--hhhhHHhhhhhhe
Confidence 999999888776 444445567899999999999998877665542 289999999998764321 1222444455555
Q ss_pred EecC
Q 046157 526 NLRW 529 (577)
Q Consensus 526 ~l~~ 529 (577)
++.-
T Consensus 506 ~i~~ 509 (1081)
T KOG0618|consen 506 DITL 509 (1081)
T ss_pred eccc
Confidence 4443
No 22
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.16 E-value=2.9e-11 Score=110.37 Aligned_cols=214 Identities=17% Similarity=0.140 Sum_probs=149.1
Q ss_pred cCccCcEEeccCCcccChhHHHHHHhcCCCCcEEEeccCCCCCHHHHHHHHhcCCCccEEEecCCCCCCcchhHHHHhhh
Q 046157 185 KLKRLKRINLSGNFFITDKSLMFLSSNLVLLREILIRDCDFITQSGISFAMRNSPNLVSISVNGIGIPTIDSCFKESFAY 264 (577)
Q Consensus 185 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 264 (577)
.+.+|+.+.+.++ .+.+.+.....+.|++++.|+++..-......+..++..+|+|+.|+++.+.+......... ..
T Consensus 119 n~kkL~~IsLdn~-~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~--~~ 195 (505)
T KOG3207|consen 119 NLKKLREISLDNY-RVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTT--LL 195 (505)
T ss_pred hHHhhhheeecCc-cccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccch--hh
Confidence 4567888888873 55555544566779999999998754445566778888999999999998876332222111 15
Q ss_pred hcCCCEEEcCCCCCChHHHHHHHhcCCCCcEEEecCCCCCCHHHHHHHHhcCCCcCeeecccccccChHHHHHHHhcCCC
Q 046157 265 ARGLCEIDLSNSFISDELLRLLGEACLPLKKLVLSHCYNFTLAGISFLLSKYQSLEHLNLEAANFLEDESMIDLSKFLTS 344 (577)
Q Consensus 265 ~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~ 344 (577)
++.|+.|.++.|.++...+..+...+|+|+.|.+..+......... ...++.|+.|+|+++..++....... ..+|.
T Consensus 196 l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~--~~i~~~L~~LdLs~N~li~~~~~~~~-~~l~~ 272 (505)
T KOG3207|consen 196 LSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATS--TKILQTLQELDLSNNNLIDFDQGYKV-GTLPG 272 (505)
T ss_pred hhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecch--hhhhhHHhhccccCCccccccccccc-ccccc
Confidence 6789999999999998888888888999999999887533211111 23456889999999886654433333 34788
Q ss_pred CCEEeecCCCCCCh-----HHHHHHHhhCCCCCeEEeeeccCCCCcccccccCCCCccEEEcCCCC
Q 046157 345 LNFIDLGFCAKLTN-----STFFTILRECPLLSEIKMETTNLGLDDFTTPLVINPQVKSLHLARNG 405 (577)
Q Consensus 345 L~~L~l~~~~~~~~-----~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 405 (577)
|+.|+++.+. +++ .........+|+|+.|++..|.+........+...++|+.|.+..++
T Consensus 273 L~~Lnls~tg-i~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ 337 (505)
T KOG3207|consen 273 LNQLNLSSTG-IASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNY 337 (505)
T ss_pred hhhhhccccC-cchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhccccc
Confidence 8888888765 222 22222345678888888888887666666667777777777766554
No 23
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=98.96 E-value=1.1e-09 Score=112.47 Aligned_cols=260 Identities=14% Similarity=0.095 Sum_probs=163.1
Q ss_pred CCCcEEEeccCCCCCHHHHHHHHhcCCCccEEEecCCCCCCcchhHHHHhhhhcCCCEEEcCCCCCChHHHHHHHhcCCC
Q 046157 213 VLLREILIRDCDFITQSGISFAMRNSPNLVSISVNGIGIPTIDSCFKESFAYARGLCEIDLSNSFISDELLRLLGEACLP 292 (577)
Q Consensus 213 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~ 292 (577)
.+-..|+++++. ++. ++..+ .++|+.|.+.++.+..+.. ..++|++|++++|.++.. ....++
T Consensus 201 ~~~~~LdLs~~~-Lts--LP~~l--~~~L~~L~L~~N~Lt~LP~-------lp~~Lk~LdLs~N~LtsL-----P~lp~s 263 (788)
T PRK15387 201 NGNAVLNVGESG-LTT--LPDCL--PAHITTLVIPDNNLTSLPA-------LPPELRTLEVSGNQLTSL-----PVLPPG 263 (788)
T ss_pred CCCcEEEcCCCC-CCc--CCcch--hcCCCEEEccCCcCCCCCC-------CCCCCcEEEecCCccCcc-----cCcccc
Confidence 456678877753 221 11111 2478999999887654432 247899999999877632 122568
Q ss_pred CcEEEecCCCCCCHHHHHHHHhcCCCcCeeecccccccChHHHHHHHhcCCCCCEEeecCCCCCChHHHHHHHhhCCCCC
Q 046157 293 LKKLVLSHCYNFTLAGISFLLSKYQSLEHLNLEAANFLEDESMIDLSKFLTSLNFIDLGFCAKLTNSTFFTILRECPLLS 372 (577)
Q Consensus 293 L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~ 372 (577)
|+.|++.++... .+. ....+|+.|+++++. ++.. ....++|+.|+++++. +... .....+|+
T Consensus 264 L~~L~Ls~N~L~---~Lp---~lp~~L~~L~Ls~N~-Lt~L-----P~~p~~L~~LdLS~N~-L~~L-----p~lp~~L~ 325 (788)
T PRK15387 264 LLELSIFSNPLT---HLP---ALPSGLCKLWIFGNQ-LTSL-----PVLPPGLQELSVSDNQ-LASL-----PALPSELC 325 (788)
T ss_pred cceeeccCCchh---hhh---hchhhcCEEECcCCc-cccc-----cccccccceeECCCCc-cccC-----CCCccccc
Confidence 889988876422 122 234578889988876 3321 1235789999998753 3321 11234688
Q ss_pred eEEeeeccCCCCcccccccCCCCccEEEcCCCCCCCHHHHHHHHhhCCCccEEecCCCCCCCHHHHHHHHhhCCCCcEEE
Q 046157 373 EIKMETTNLGLDDFTTPLVINPQVKSLHLARNGNLSDESLKKLAILCPNLEVIDLSHCLGITEEGIGEILKSCCEIKCLE 452 (577)
Q Consensus 373 ~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~ 452 (577)
.|++.+|.+..-. . ..++|+.|++++|. ++. +....++|+.|+++++ .++. +. ....+|+.|+
T Consensus 326 ~L~Ls~N~L~~LP---~--lp~~Lq~LdLS~N~-Ls~-----LP~lp~~L~~L~Ls~N-~L~~--LP---~l~~~L~~Ld 388 (788)
T PRK15387 326 KLWAYNNQLTSLP---T--LPSGLQELSVSDNQ-LAS-----LPTLPSELYKLWAYNN-RLTS--LP---ALPSGLKELI 388 (788)
T ss_pred ccccccCcccccc---c--cccccceEecCCCc-cCC-----CCCCCcccceehhhcc-cccc--Cc---ccccccceEE
Confidence 8888887765321 1 12479999999876 443 2223467888888876 3442 22 2235799999
Q ss_pred cccccccccccccccCCCceEEEccCCCCCHHHHHHHHHhCCCccEEecCCCCCCChhhHHHHHhhCCCCcEEEecCCCC
Q 046157 453 IKRCRAVFDLGIDLELPKLEVLQASGSALNDHALKMIANTCSRILHLDLDNCLNVTTSGVKEVVEHCRTLREINLRWCDE 532 (577)
Q Consensus 453 l~~~~~l~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~c~~l~~~~l~~~~~~~~~L~~L~l~~c~~ 532 (577)
+++|. ++... ...++|+.|++++|.++... . ...+|+.|+++++. ++. +..-+..+++|+.|++++++
T Consensus 389 Ls~N~-Lt~LP--~l~s~L~~LdLS~N~LssIP--~---l~~~L~~L~Ls~Nq-Lt~--LP~sl~~L~~L~~LdLs~N~- 456 (788)
T PRK15387 389 VSGNR-LTSLP--VLPSELKELMVSGNRLTSLP--M---LPSGLLSLSVYRNQ-LTR--LPESLIHLSSETTVNLEGNP- 456 (788)
T ss_pred ecCCc-ccCCC--CcccCCCEEEccCCcCCCCC--c---chhhhhhhhhccCc-ccc--cChHHhhccCCCeEECCCCC-
Confidence 99886 44332 23468999999999887421 1 23578889998854 663 33334678999999999985
Q ss_pred CcHH
Q 046157 533 VNVD 536 (577)
Q Consensus 533 ~~~~ 536 (577)
++..
T Consensus 457 Ls~~ 460 (788)
T PRK15387 457 LSER 460 (788)
T ss_pred CCch
Confidence 4433
No 24
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=98.93 E-value=8e-09 Score=105.61 Aligned_cols=165 Identities=20% Similarity=0.280 Sum_probs=110.1
Q ss_pred CCCcCeeecccccccChHHHHHHHhcCCCCCEEeecCCCCCChHHHHHHHhhCCCCCeEEeeeccCCCCcccccccCCCC
Q 046157 316 YQSLEHLNLEAANFLEDESMIDLSKFLTSLNFIDLGFCAKLTNSTFFTILRECPLLSEIKMETTNLGLDDFTTPLVINPQ 395 (577)
Q Consensus 316 ~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 395 (577)
..+|++|++++...++..-...+...+|+|++|.+.+. .+....+..+...+|+|..||++++++.. ...++.+++
T Consensus 121 r~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~-~~~~~dF~~lc~sFpNL~sLDIS~TnI~n---l~GIS~Lkn 196 (699)
T KOG3665|consen 121 RQNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGR-QFDNDDFSQLCASFPNLRSLDISGTNISN---LSGISRLKN 196 (699)
T ss_pred HHhhhhcCccccchhhccHHHHHhhhCcccceEEecCc-eecchhHHHHhhccCccceeecCCCCccC---cHHHhcccc
Confidence 46888888888776655556667777888888888774 35555577777788888888888876644 345566777
Q ss_pred ccEEEcCCCCCCCHHHHHHHHhhCCCccEEecCCCCCCCHHHHHHHHhhCCCCcEEEcccccccccccccccCCCceEEE
Q 046157 396 VKSLHLARNGNLSDESLKKLAILCPNLEVIDLSHCLGITEEGIGEILKSCCEIKCLEIKRCRAVFDLGIDLELPKLEVLQ 475 (577)
Q Consensus 396 L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~ 475 (577)
|+.|.+.+-..-+...+..+.. +.+|+.||+|.-....+..+....-. -...+|+|+.||
T Consensus 197 Lq~L~mrnLe~e~~~~l~~LF~-L~~L~vLDIS~~~~~~~~~ii~qYle-------------------c~~~LpeLrfLD 256 (699)
T KOG3665|consen 197 LQVLSMRNLEFESYQDLIDLFN-LKKLRVLDISRDKNNDDTKIIEQYLE-------------------CGMVLPELRFLD 256 (699)
T ss_pred HHHHhccCCCCCchhhHHHHhc-ccCCCeeeccccccccchHHHHHHHH-------------------hcccCccccEEe
Confidence 7777776654333345555553 57777777766433333211111100 112478999999
Q ss_pred ccCCCCCHHHHHHHHHhCCCccEEecCCC
Q 046157 476 ASGSALNDHALKMIANTCSRILHLDLDNC 504 (577)
Q Consensus 476 l~~~~i~~~~~~~l~~~~~~L~~L~l~~c 504 (577)
.+++.++++.++.+.+.-|+|+.+.+-+|
T Consensus 257 cSgTdi~~~~le~ll~sH~~L~~i~~~~~ 285 (699)
T KOG3665|consen 257 CSGTDINEEILEELLNSHPNLQQIAALDC 285 (699)
T ss_pred cCCcchhHHHHHHHHHhCccHhhhhhhhh
Confidence 99999999999888887788888776654
No 25
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=98.92 E-value=1.7e-09 Score=110.99 Aligned_cols=265 Identities=17% Similarity=0.120 Sum_probs=171.3
Q ss_pred ccCcEEeccCCcccChhHHHHHHhcCCCCcEEEeccCCCCCHHHHHHHHhcCCCccEEEecCCCCCCcchhHHHHhhhhc
Q 046157 187 KRLKRINLSGNFFITDKSLMFLSSNLVLLREILIRDCDFITQSGISFAMRNSPNLVSISVNGIGIPTIDSCFKESFAYAR 266 (577)
Q Consensus 187 ~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 266 (577)
..-..|+++++ .++ .++.-. .++|+.|.+.++. ++. +....++|++|++.++.+..++. ..+
T Consensus 201 ~~~~~LdLs~~-~Lt--sLP~~l--~~~L~~L~L~~N~-Lt~-----LP~lp~~Lk~LdLs~N~LtsLP~-------lp~ 262 (788)
T PRK15387 201 NGNAVLNVGES-GLT--TLPDCL--PAHITTLVIPDNN-LTS-----LPALPPELRTLEVSGNQLTSLPV-------LPP 262 (788)
T ss_pred CCCcEEEcCCC-CCC--cCCcch--hcCCCEEEccCCc-CCC-----CCCCCCCCcEEEecCCccCcccC-------ccc
Confidence 45778888875 332 122111 2479999998753 332 12236899999999988754432 236
Q ss_pred CCCEEEcCCCCCChHHHHHHHhcCCCCcEEEecCCCCCCHHHHHHHHhcCCCcCeeecccccccChHHHHHHHhcCCCCC
Q 046157 267 GLCEIDLSNSFISDELLRLLGEACLPLKKLVLSHCYNFTLAGISFLLSKYQSLEHLNLEAANFLEDESMIDLSKFLTSLN 346 (577)
Q Consensus 267 ~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~ 346 (577)
+|++|++.+|.+.. +....++|+.|++.++.... +. ...++|+.|+++++. +... . ....+|+
T Consensus 263 sL~~L~Ls~N~L~~-----Lp~lp~~L~~L~Ls~N~Lt~---LP---~~p~~L~~LdLS~N~-L~~L--p---~lp~~L~ 325 (788)
T PRK15387 263 GLLELSIFSNPLTH-----LPALPSGLCKLWIFGNQLTS---LP---VLPPGLQELSVSDNQ-LASL--P---ALPSELC 325 (788)
T ss_pred ccceeeccCCchhh-----hhhchhhcCEEECcCCcccc---cc---ccccccceeECCCCc-cccC--C---CCccccc
Confidence 89999999987653 22234679999998864322 21 234789999999986 3321 1 1235688
Q ss_pred EEeecCCCCCChHHHHHHHhhCCCCCeEEeeeccCCCCcccccccCCCCccEEEcCCCCCCCHHHHHHHHhhCCCccEEe
Q 046157 347 FIDLGFCAKLTNSTFFTILRECPLLSEIKMETTNLGLDDFTTPLVINPQVKSLHLARNGNLSDESLKKLAILCPNLEVID 426 (577)
Q Consensus 347 ~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~ 426 (577)
.|.++++. ++. +....++|+.|++++|.+.... . ..++|+.|+++++. +.. +....++|+.|+
T Consensus 326 ~L~Ls~N~-L~~-----LP~lp~~Lq~LdLS~N~Ls~LP---~--lp~~L~~L~Ls~N~-L~~-----LP~l~~~L~~Ld 388 (788)
T PRK15387 326 KLWAYNNQ-LTS-----LPTLPSGLQELSVSDNQLASLP---T--LPSELYKLWAYNNR-LTS-----LPALPSGLKELI 388 (788)
T ss_pred ccccccCc-ccc-----ccccccccceEecCCCccCCCC---C--CCcccceehhhccc-ccc-----CcccccccceEE
Confidence 88887754 321 1112358999999999876422 1 23578889988765 432 222346899999
Q ss_pred cCCCCCCCHHHHHHHHhhCCCCcEEEcccccccccccccccCCCceEEEccCCCCCHHHHHHHHHhCCCccEEecCCCCC
Q 046157 427 LSHCLGITEEGIGEILKSCCEIKCLEIKRCRAVFDLGIDLELPKLEVLQASGSALNDHALKMIANTCSRILHLDLDNCLN 506 (577)
Q Consensus 427 l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~c~~ 506 (577)
++++ .++.. . ...++|+.|++++|. +.... ..+.+|+.|++++|.++... ..+ ..+++|+.|++++++
T Consensus 389 Ls~N-~Lt~L--P---~l~s~L~~LdLS~N~-LssIP--~l~~~L~~L~Ls~NqLt~LP-~sl-~~L~~L~~LdLs~N~- 456 (788)
T PRK15387 389 VSGN-RLTSL--P---VLPSELKELMVSGNR-LTSLP--MLPSGLLSLSVYRNQLTRLP-ESL-IHLSSETTVNLEGNP- 456 (788)
T ss_pred ecCC-cccCC--C---CcccCCCEEEccCCc-CCCCC--cchhhhhhhhhccCcccccC-hHH-hhccCCCeEECCCCC-
Confidence 9987 44421 1 123689999999997 44332 23457899999999887432 222 357899999999975
Q ss_pred CChhhHHHH
Q 046157 507 VTTSGVKEV 515 (577)
Q Consensus 507 l~~~~l~~~ 515 (577)
++...+..+
T Consensus 457 Ls~~~~~~L 465 (788)
T PRK15387 457 LSERTLQAL 465 (788)
T ss_pred CCchHHHHH
Confidence 776544433
No 26
>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B.
Probab=98.81 E-value=2.2e-09 Score=68.42 Aligned_cols=35 Identities=40% Similarity=0.494 Sum_probs=31.2
Q ss_pred CCCChHHHHHHHHhcCCccchhhhHHhhHHHHhhhc
Q 046157 6 LDLPPECWELIFNSLNDQSHFESLSLVSHRFLSITN 41 (577)
Q Consensus 6 ~~LP~evl~~I~~~L~~~~~~~~~~~vcr~w~~~~~ 41 (577)
.+||+||+.+||+|| +.+|+.++++|||+|++++.
T Consensus 2 ~~LP~Eil~~If~~L-~~~dl~~~~~vcr~w~~~~~ 36 (47)
T PF12937_consen 2 SSLPDEILLEIFSYL-DPRDLLRLSLVCRRWRRIAN 36 (47)
T ss_dssp CCS-HHHHHHHHTTS--HHHHHHHTTSSHHHHHHHT
T ss_pred hHhHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHHC
Confidence 579999999999999 79999999999999999883
No 27
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.79 E-value=3.6e-09 Score=88.13 Aligned_cols=129 Identities=16% Similarity=0.223 Sum_probs=49.6
Q ss_pred CCccEEecCCCCCCCHHHHHHHHhhCCCCcEEEcccccccccccccccCCCceEEEccCCCCCHHHHHHHHHhCCCccEE
Q 046157 420 PNLEVIDLSHCLGITEEGIGEILKSCCEIKCLEIKRCRAVFDLGIDLELPKLEVLQASGSALNDHALKMIANTCSRILHL 499 (577)
Q Consensus 420 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L 499 (577)
.++++|+++++ .++. +..+-..+.+|+.|++++|. ++.......+++|++|++++|.+++.. ..+...+|+|++|
T Consensus 19 ~~~~~L~L~~n-~I~~--Ie~L~~~l~~L~~L~Ls~N~-I~~l~~l~~L~~L~~L~L~~N~I~~i~-~~l~~~lp~L~~L 93 (175)
T PF14580_consen 19 VKLRELNLRGN-QIST--IENLGATLDKLEVLDLSNNQ-ITKLEGLPGLPRLKTLDLSNNRISSIS-EGLDKNLPNLQEL 93 (175)
T ss_dssp --------------------S--TT-TT--EEE-TTS---S--TT----TT--EEE--SS---S-C-HHHHHH-TT--EE
T ss_pred ccccccccccc-cccc--ccchhhhhcCCCEEECCCCC-CccccCccChhhhhhcccCCCCCCccc-cchHHhCCcCCEE
Confidence 34555666554 2322 22222234566666666665 444444445677888888888777642 1233357899999
Q ss_pred ecCCCCCCChhhHHHHHhhCCCCcEEEecCCCCCcH-HHHHHHHHhCCCCceeccC
Q 046157 500 DLDNCLNVTTSGVKEVVEHCRTLREINLRWCDEVNV-DIVAWMVFSRPSLRKIIPP 554 (577)
Q Consensus 500 ~l~~c~~l~~~~l~~~~~~~~~L~~L~l~~c~~~~~-~~~~~~~~~~~~L~~l~~~ 554 (577)
+++++ +|.+..-...+..+|+|+.|++.++|-... .+-..++..+|+|+.|+..
T Consensus 94 ~L~~N-~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~ 148 (175)
T PF14580_consen 94 YLSNN-KISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQ 148 (175)
T ss_dssp E-TTS----SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTE
T ss_pred ECcCC-cCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCE
Confidence 99885 465422223346799999999999876543 4566788899999999765
No 28
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=98.65 E-value=7.7e-08 Score=98.57 Aligned_cols=138 Identities=18% Similarity=0.253 Sum_probs=58.9
Q ss_pred HHHHHhhCCCccEEecCCCCCCCHHHHHHHHhhCCCCcEEEcccccccccccccccCCCceEEEccCCCCCH-HHHHHHH
Q 046157 412 LKKLAILCPNLEVIDLSHCLGITEEGIGEILKSCCEIKCLEIKRCRAVFDLGIDLELPKLEVLQASGSALND-HALKMIA 490 (577)
Q Consensus 412 l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~i~~-~~~~~l~ 490 (577)
...++..+|+|++|.+.+- .+..+.+..+..++|+|..|+++++. +++......+++|+.|.+.+-.+.. ..+..+.
T Consensus 140 ~~kig~~LPsL~sL~i~~~-~~~~~dF~~lc~sFpNL~sLDIS~Tn-I~nl~GIS~LknLq~L~mrnLe~e~~~~l~~LF 217 (699)
T KOG3665|consen 140 PKKIGTMLPSLRSLVISGR-QFDNDDFSQLCASFPNLRSLDISGTN-ISNLSGISRLKNLQVLSMRNLEFESYQDLIDLF 217 (699)
T ss_pred HHHHhhhCcccceEEecCc-eecchhHHHHhhccCccceeecCCCC-ccCcHHHhccccHHHHhccCCCCCchhhHHHHh
Confidence 3344444455555544442 23333344444444555555554444 4444333444444444444433332 2223332
Q ss_pred HhCCCccEEecCCCCCCChh-hHHHHH---hhCCCCcEEEecCCCCCcHHHHHHHHHhCCCCceecc
Q 046157 491 NTCSRILHLDLDNCLNVTTS-GVKEVV---EHCRTLREINLRWCDEVNVDIVAWMVFSRPSLRKIIP 553 (577)
Q Consensus 491 ~~~~~L~~L~l~~c~~l~~~-~l~~~~---~~~~~L~~L~l~~c~~~~~~~~~~~~~~~~~L~~l~~ 553 (577)
.+.+|+.||++.-...... -+...+ ..+|+|+.||.++- .++.+.++.+..+-|+|+.+.+
T Consensus 218 -~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgT-di~~~~le~ll~sH~~L~~i~~ 282 (699)
T KOG3665|consen 218 -NLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGT-DINEEILEELLNSHPNLQQIAA 282 (699)
T ss_pred -cccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCc-chhHHHHHHHHHhCccHhhhhh
Confidence 2455555555543322221 111111 23455555555542 3444455555555555555543
No 29
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=98.63 E-value=3.4e-10 Score=102.34 Aligned_cols=107 Identities=15% Similarity=0.090 Sum_probs=60.3
Q ss_pred HHhhCCCCcEEEcccccccccccc-cccCCCceEEEccCCCCCHHHHHHHHHhCCCccEEecCCCCCCChhhHHHHHhhC
Q 046157 441 ILKSCCEIKCLEIKRCRAVFDLGI-DLELPKLEVLQASGSALNDHALKMIANTCSRILHLDLDNCLNVTTSGVKEVVEHC 519 (577)
Q Consensus 441 ~~~~~~~L~~L~l~~~~~l~~~~~-~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~c~~l~~~~l~~~~~~~ 519 (577)
.+..+++|..|+++++. +.+... ....-.||+|+++.|.+....- .+. ....++.+-.++ ..+....... ..++
T Consensus 430 ~l~~l~kLt~L~L~NN~-Ln~LP~e~~~lv~Lq~LnlS~NrFr~lP~-~~y-~lq~lEtllas~-nqi~~vd~~~-l~nm 504 (565)
T KOG0472|consen 430 ELSQLQKLTFLDLSNNL-LNDLPEEMGSLVRLQTLNLSFNRFRMLPE-CLY-ELQTLETLLASN-NQIGSVDPSG-LKNM 504 (565)
T ss_pred HHHhhhcceeeecccch-hhhcchhhhhhhhhheecccccccccchH-HHh-hHHHHHHHHhcc-ccccccChHH-hhhh
Confidence 34557899999999987 555553 2345569999999986643211 110 012223332232 2343322222 2556
Q ss_pred CCCcEEEecCCCCCcHHHHHHHHHhCCCCceeccCC
Q 046157 520 RTLREINLRWCDEVNVDIVAWMVFSRPSLRKIIPPC 555 (577)
Q Consensus 520 ~~L~~L~l~~c~~~~~~~~~~~~~~~~~L~~l~~~~ 555 (577)
.+|..|++.+..- ..++....++.+|++|.+.+
T Consensus 505 ~nL~tLDL~nNdl---q~IPp~LgnmtnL~hLeL~g 537 (565)
T KOG0472|consen 505 RNLTTLDLQNNDL---QQIPPILGNMTNLRHLELDG 537 (565)
T ss_pred hhcceeccCCCch---hhCChhhccccceeEEEecC
Confidence 6777777666432 23555666777777777765
No 30
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.48 E-value=4.1e-08 Score=81.89 Aligned_cols=62 Identities=18% Similarity=0.207 Sum_probs=20.4
Q ss_pred CCCceEEEccCCCCCHH-HHHHHHHhCCCccEEecCCCCCCChhh-HHHHHhhCCCCcEEEecCC
Q 046157 468 LPKLEVLQASGSALNDH-ALKMIANTCSRILHLDLDNCLNVTTSG-VKEVVEHCRTLREINLRWC 530 (577)
Q Consensus 468 ~~~L~~L~l~~~~i~~~-~~~~l~~~~~~L~~L~l~~c~~l~~~~-l~~~~~~~~~L~~L~l~~c 530 (577)
+|+|++|++++|.|.+. .+..+ ..+++|+.|++.++|--.... =..++..+|+|+.||-...
T Consensus 87 lp~L~~L~L~~N~I~~l~~l~~L-~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~~V 150 (175)
T PF14580_consen 87 LPNLQELYLSNNKISDLNELEPL-SSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQDV 150 (175)
T ss_dssp -TT--EEE-TTS---SCCCCGGG-GG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTEET
T ss_pred CCcCCEEECcCCcCCChHHhHHH-HcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCEEc
Confidence 44444444444444331 11222 135566666666555222211 1233356666666654443
No 31
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.47 E-value=4.3e-08 Score=85.46 Aligned_cols=193 Identities=17% Similarity=0.215 Sum_probs=97.6
Q ss_pred HHHhcCCCCcEEEecCCCCCCHHHHHHHHhcCCCcCeeecccccccChHHHHHHHhcCCCCCEEeecCCCCCChHHHHHH
Q 046157 285 LLGEACLPLKKLVLSHCYNFTLAGISFLLSKYQSLEHLNLEAANFLEDESMIDLSKFLTSLNFIDLGFCAKLTNSTFFTI 364 (577)
Q Consensus 285 ~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~l 364 (577)
.+...+..++.+++.++.......+..++..+|.|+.|+++.+..-++ +..+.....+|+.|-+.+ ..++.......
T Consensus 65 ~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~--I~~lp~p~~nl~~lVLNg-T~L~w~~~~s~ 141 (418)
T KOG2982|consen 65 LFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSD--IKSLPLPLKNLRVLVLNG-TGLSWTQSTSS 141 (418)
T ss_pred HHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCc--cccCcccccceEEEEEcC-CCCChhhhhhh
Confidence 344445555555555544444444445555555555555555442111 111111123445554443 23333334444
Q ss_pred HhhCCCCCeEEeeeccCCCCcccccccCCCCccEEEcCCCCCCCHHHHHHHHhhCCCccEEecCCCCCCCHHHHHHHHhh
Q 046157 365 LRECPLLSEIKMETTNLGLDDFTTPLVINPQVKSLHLARNGNLSDESLKKLAILCPNLEVIDLSHCLGITEEGIGEILKS 444 (577)
Q Consensus 365 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 444 (577)
....|.+++|.++.|. ++.+. +.+...+. .-+.+++|+...|...-......+.+-
T Consensus 142 l~~lP~vtelHmS~N~---------------~rq~n------~Dd~c~e~---~s~~v~tlh~~~c~~~~w~~~~~l~r~ 197 (418)
T KOG2982|consen 142 LDDLPKVTELHMSDNS---------------LRQLN------LDDNCIED---WSTEVLTLHQLPCLEQLWLNKNKLSRI 197 (418)
T ss_pred hhcchhhhhhhhccch---------------hhhhc------cccccccc---cchhhhhhhcCCcHHHHHHHHHhHHhh
Confidence 4444444444444432 11111 12222211 224566666666654444555566667
Q ss_pred CCCCcEEEccccccccccc---ccccCCCceEEEccCCCCCHHHHHHHHHhCCCccEEecCCCC
Q 046157 445 CCEIKCLEIKRCRAVFDLG---IDLELPKLEVLQASGSALNDHALKMIANTCSRILHLDLDNCL 505 (577)
Q Consensus 445 ~~~L~~L~l~~~~~l~~~~---~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~c~ 505 (577)
+|++..+-+..|+ ++... -...+|.+--|.++.+++++..-..-...++.|..|.+++.|
T Consensus 198 Fpnv~sv~v~e~P-lK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~P 260 (418)
T KOG2982|consen 198 FPNVNSVFVCEGP-LKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENP 260 (418)
T ss_pred cccchheeeecCc-ccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCc
Confidence 7888887777776 33322 223466666777777778765433333457888888888766
No 32
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=98.47 E-value=9.5e-09 Score=93.21 Aligned_cols=110 Identities=18% Similarity=0.178 Sum_probs=62.7
Q ss_pred cccccCCCCccEEEcCCCCCCCHHHHHHHHhhCCCccEEecCCCCCCCHHHHHHHHhhCCCCcEEEcccccccccccc--
Q 046157 387 TTPLVINPQVKSLHLARNGNLSDESLKKLAILCPNLEVIDLSHCLGITEEGIGEILKSCCEIKCLEIKRCRAVFDLGI-- 464 (577)
Q Consensus 387 ~~~~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~-- 464 (577)
...+..+++|..|+++++. +.+...+ ++ ....|+.|+++.+. +. .+...+-....++.+-.+++. +...+.
T Consensus 428 ~~~l~~l~kLt~L~L~NN~-Ln~LP~e-~~-~lv~Lq~LnlS~Nr-Fr--~lP~~~y~lq~lEtllas~nq-i~~vd~~~ 500 (565)
T KOG0472|consen 428 PLELSQLQKLTFLDLSNNL-LNDLPEE-MG-SLVRLQTLNLSFNR-FR--MLPECLYELQTLETLLASNNQ-IGSVDPSG 500 (565)
T ss_pred hHHHHhhhcceeeecccch-hhhcchh-hh-hhhhhheecccccc-cc--cchHHHhhHHHHHHHHhcccc-ccccChHH
Confidence 3455778888888888765 4432222 22 24568888888762 21 111111112223333233232 333332
Q ss_pred cccCCCceEEEccCCCCCHHHHHHHHHhCCCccEEecCCCC
Q 046157 465 DLELPKLEVLQASGSALNDHALKMIANTCSRILHLDLDNCL 505 (577)
Q Consensus 465 ~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~c~ 505 (577)
...+.+|.+||+.+|.+.. +..+..+|.+|++|++++++
T Consensus 501 l~nm~nL~tLDL~nNdlq~--IPp~LgnmtnL~hLeL~gNp 539 (565)
T KOG0472|consen 501 LKNMRNLTTLDLQNNDLQQ--IPPILGNMTNLRHLELDGNP 539 (565)
T ss_pred hhhhhhcceeccCCCchhh--CChhhccccceeEEEecCCc
Confidence 2367788888888877643 33445578899999999876
No 33
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.47 E-value=3.9e-07 Score=79.65 Aligned_cols=61 Identities=13% Similarity=0.030 Sum_probs=31.8
Q ss_pred CCCCEEeecCCCCCChHHHHHHHhhCCCCCeEEeeeccCCCCcccccccCCCCccEEEcCC
Q 046157 343 TSLNFIDLGFCAKLTNSTFFTILRECPLLSEIKMETTNLGLDDFTTPLVINPQVKSLHLAR 403 (577)
Q Consensus 343 ~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~ 403 (577)
+.+++|+...|...-......+.+.+|++..+.+..+.+...........+|.+..|.++.
T Consensus 173 ~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~ 233 (418)
T KOG2982|consen 173 TEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGA 233 (418)
T ss_pred hhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCCCcchhhhhcc
Confidence 3555666655553333334455666777777777666554443333334444444444443
No 34
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.46 E-value=8.2e-06 Score=70.64 Aligned_cols=46 Identities=13% Similarity=0.257 Sum_probs=25.2
Q ss_pred HHhcCCCccEEEecCCCC-CCcchhHHHHhhhhcCCCEEEcCCCCCC
Q 046157 234 AMRNSPNLVSISVNGIGI-PTIDSCFKESFAYARGLCEIDLSNSFIS 279 (577)
Q Consensus 234 ~~~~~~~L~~L~l~~~~~-~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 279 (577)
.+-+||.|+..+++.+.+ ........+.++....|++|.+.+|.+.
T Consensus 87 aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlG 133 (388)
T COG5238 87 ALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLG 133 (388)
T ss_pred HHhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCC
Confidence 334566666666666555 2233344445555566666666666543
No 35
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=98.44 E-value=8.2e-07 Score=92.15 Aligned_cols=246 Identities=15% Similarity=0.171 Sum_probs=111.4
Q ss_pred CCCcEEEeccCCCCCHHHHHHHHhcCCCccEEEecCCCCCCcchhHHHHhhhhcCCCEEEcCCCCCChHHHHHHHhcCCC
Q 046157 213 VLLREILIRDCDFITQSGISFAMRNSPNLVSISVNGIGIPTIDSCFKESFAYARGLCEIDLSNSFISDELLRLLGEACLP 292 (577)
Q Consensus 213 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~ 292 (577)
.+...|++.+.. ++. ++.. -.++++.|++.++.+..+.... .++|++|++++|.++.- ...+ .++
T Consensus 178 ~~~~~L~L~~~~-Lts--LP~~--Ip~~L~~L~Ls~N~LtsLP~~l------~~nL~~L~Ls~N~LtsL-P~~l---~~~ 242 (754)
T PRK15370 178 NNKTELRLKILG-LTT--IPAC--IPEQITTLILDNNELKSLPENL------QGNIKTLYANSNQLTSI-PATL---PDT 242 (754)
T ss_pred cCceEEEeCCCC-cCc--CCcc--cccCCcEEEecCCCCCcCChhh------ccCCCEEECCCCccccC-Chhh---hcc
Confidence 356677776642 221 1110 1256888888887765443322 24788888887765521 1111 246
Q ss_pred CcEEEecCCCCCCHHHHHHHHhcCCCcCeeecccccccChHHHHHHHhcCCCCCEEeecCCCCCChHHHHHHHhhCCCCC
Q 046157 293 LKKLVLSHCYNFTLAGISFLLSKYQSLEHLNLEAANFLEDESMIDLSKFLTSLNFIDLGFCAKLTNSTFFTILRECPLLS 372 (577)
Q Consensus 293 L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~ 372 (577)
|+.|+++++.... ++..+ ..+|+.|+++++. ++. +.. ...++|+.|+++++. ++... . ...++|+
T Consensus 243 L~~L~Ls~N~L~~---LP~~l--~s~L~~L~Ls~N~-L~~--LP~--~l~~sL~~L~Ls~N~-Lt~LP--~--~lp~sL~ 307 (754)
T PRK15370 243 IQEMELSINRITE---LPERL--PSALQSLDLFHNK-ISC--LPE--NLPEELRYLSVYDNS-IRTLP--A--HLPSGIT 307 (754)
T ss_pred ccEEECcCCccCc---CChhH--hCCCCEEECcCCc-cCc--ccc--ccCCCCcEEECCCCc-cccCc--c--cchhhHH
Confidence 7777777764322 11111 2367777777655 321 111 112467777776643 22100 0 0113456
Q ss_pred eEEeeeccCCCCcccccccCCCCccEEEcCCCCCCCHHHHHHHHhhCCCccEEecCCCCCCCHHHHHHHHhhCCCCcEEE
Q 046157 373 EIKMETTNLGLDDFTTPLVINPQVKSLHLARNGNLSDESLKKLAILCPNLEVIDLSHCLGITEEGIGEILKSCCEIKCLE 452 (577)
Q Consensus 373 ~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~ 452 (577)
.|++.+|.+... +. ...++|+.|++++|. ++.. .. ..+++|+.|++++| .++. +...+ .++|+.|+
T Consensus 308 ~L~Ls~N~Lt~L--P~--~l~~sL~~L~Ls~N~-Lt~L--P~--~l~~sL~~L~Ls~N-~L~~--LP~~l--p~~L~~Ld 373 (754)
T PRK15370 308 HLNVQSNSLTAL--PE--TLPPGLKTLEAGENA-LTSL--PA--SLPPELQVLDVSKN-QITV--LPETL--PPTITTLD 373 (754)
T ss_pred HHHhcCCccccC--Cc--cccccceeccccCCc-cccC--Ch--hhcCcccEEECCCC-CCCc--CChhh--cCCcCEEE
Confidence 666666554321 11 112456666666554 2211 00 11245666666655 2321 11101 24566666
Q ss_pred cccccccccccccccCCCceEEEccCCCCCHH--HHHHHHHhCCCccEEecCCC
Q 046157 453 IKRCRAVFDLGIDLELPKLEVLQASGSALNDH--ALKMIANTCSRILHLDLDNC 504 (577)
Q Consensus 453 l~~~~~l~~~~~~~~~~~L~~L~l~~~~i~~~--~~~~l~~~~~~L~~L~l~~c 504 (577)
+++|. ++..... ..+.|+.|++++|.+... .+......++++..|++.++
T Consensus 374 Ls~N~-Lt~LP~~-l~~sL~~LdLs~N~L~~LP~sl~~~~~~~~~l~~L~L~~N 425 (754)
T PRK15370 374 VSRNA-LTNLPEN-LPAALQIMQASRNNLVRLPESLPHFRGEGPQPTRIIVEYN 425 (754)
T ss_pred CCCCc-CCCCCHh-HHHHHHHHhhccCCcccCchhHHHHhhcCCCccEEEeeCC
Confidence 66554 2222110 112455555555554421 12222222345555555554
No 36
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.44 E-value=1.4e-05 Score=69.21 Aligned_cols=42 Identities=24% Similarity=0.303 Sum_probs=26.7
Q ss_pred HHHHhhhhcCCCEEEcCCCCCChHHHHHHHhcCCCCcEEEec
Q 046157 258 FKESFAYARGLCEIDLSNSFISDELLRLLGEACLPLKKLVLS 299 (577)
Q Consensus 258 ~~~~~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~ 299 (577)
....+.....+++++|++|.+..+....+.....+.+.|.+.
T Consensus 22 v~eel~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vv 63 (388)
T COG5238 22 VVEELEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVV 63 (388)
T ss_pred HHHHHHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEe
Confidence 344444567778888888888777777776654444444443
No 37
>smart00256 FBOX A Receptor for Ubiquitination Targets.
Probab=98.37 E-value=3.3e-07 Score=56.65 Aligned_cols=33 Identities=33% Similarity=0.442 Sum_probs=31.1
Q ss_pred CChHHHHHHHHhcCCccchhhhHHhhHHHHhhhc
Q 046157 8 LPPECWELIFNSLNDQSHFESLSLVSHRFLSITN 41 (577)
Q Consensus 8 LP~evl~~I~~~L~~~~~~~~~~~vcr~w~~~~~ 41 (577)
||+|++..||.|+ +..|+.+++.|||+|+.++.
T Consensus 1 lP~~ll~~I~~~l-~~~d~~~~~~vc~~~~~~~~ 33 (41)
T smart00256 1 LPDEILEEILSKL-PPKDLLRLRKVSRRWRSLID 33 (41)
T ss_pred CCHHHHHHHHHcC-CHHHHHHHHHHHHHHHHHhc
Confidence 7999999999999 68999999999999999884
No 38
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=98.36 E-value=7e-08 Score=87.56 Aligned_cols=101 Identities=15% Similarity=0.073 Sum_probs=66.6
Q ss_pred HHHHHHHhhCCCCcEEEccccccccccc--ccccCCCceEEEccCCCCCHHHHHHHHHhCCCccEEecCCCCCCChhhHH
Q 046157 436 EGIGEILKSCCEIKCLEIKRCRAVFDLG--IDLELPKLEVLQASGSALNDHALKMIANTCSRILHLDLDNCLNVTTSGVK 513 (577)
Q Consensus 436 ~~~~~~~~~~~~L~~L~l~~~~~l~~~~--~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~c~~l~~~~l~ 513 (577)
..-..-+..+++|++|+++++. ++... .......+++|.|..|.+.... ..+.+....|+.|+++++ +|+.....
T Consensus 264 ~cP~~cf~~L~~L~~lnlsnN~-i~~i~~~aFe~~a~l~eL~L~~N~l~~v~-~~~f~~ls~L~tL~L~~N-~it~~~~~ 340 (498)
T KOG4237|consen 264 ICPAKCFKKLPNLRKLNLSNNK-ITRIEDGAFEGAAELQELYLTRNKLEFVS-SGMFQGLSGLKTLSLYDN-QITTVAPG 340 (498)
T ss_pred cChHHHHhhcccceEeccCCCc-cchhhhhhhcchhhhhhhhcCcchHHHHH-HHhhhccccceeeeecCC-eeEEEecc
Confidence 3334447788888888888887 55543 3346778888888888775433 234456788888999885 46654333
Q ss_pred HHHhhCCCCcEEEecCCCCCcHHHHHH
Q 046157 514 EVVEHCRTLREINLRWCDEVNVDIVAW 540 (577)
Q Consensus 514 ~~~~~~~~L~~L~l~~c~~~~~~~~~~ 540 (577)
. ++...+|.+|++-..|.--+-.++.
T Consensus 341 a-F~~~~~l~~l~l~~Np~~CnC~l~w 366 (498)
T KOG4237|consen 341 A-FQTLFSLSTLNLLSNPFNCNCRLAW 366 (498)
T ss_pred c-ccccceeeeeehccCcccCccchHH
Confidence 2 3666778888888776665543333
No 39
>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ]. This relatively conserved structural motif is present in numerous proteins and serves as a link between a target protein and a ubiquitin-conjugating enzyme. The SCF complex (e.g., Skp1-Cullin-F-box) plays a similar role as an E3 ligase in the ubiquitin protein degradation pathway [, ]. Different F-box proteins as a part of SCF complex recruit particular substrates for ubiquitination through specific protein-protein interaction domains. Many mammalian F-box domains contain leucine-rich or WD-40 repeats (IPR001680 from INTERPRO). However, several F-box proteins either have other previously described domains such as Sec7 domain found in FBS protein or do not contain defined protein-protein interaction domains or motifs.; GO: 0005515 protein binding; PDB: 2E32_A 2E31_A 3V7D_B 1NEX_B 3MKS_D 3L2O_B.
Probab=98.35 E-value=1.2e-07 Score=60.97 Aligned_cols=37 Identities=38% Similarity=0.476 Sum_probs=31.0
Q ss_pred CCCCChHHHHHHHHhcCCccchhhhHHhhHHHHhhhcc
Q 046157 5 PLDLPPECWELIFNSLNDQSHFESLSLVSHRFLSITNY 42 (577)
Q Consensus 5 ~~~LP~evl~~I~~~L~~~~~~~~~~~vcr~w~~~~~~ 42 (577)
..+||+|++.+||+|| +..++.+++.|||+|++++..
T Consensus 3 ~~~LP~~il~~Il~~l-~~~~~~~l~~vsk~~~~~~~~ 39 (48)
T PF00646_consen 3 LSDLPDEILQEILSYL-DPKDLLRLSLVSKRWRSLVDS 39 (48)
T ss_dssp HHHS-HHHHHHHHHTS--HHHHHHHCTT-HHHHHHHTT
T ss_pred HHHCCHHHHHHHHHHC-cHHHHHHHHHHhhHHHHHHcC
Confidence 3579999999999999 799999999999999998843
No 40
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=98.33 E-value=3.1e-06 Score=87.93 Aligned_cols=253 Identities=13% Similarity=0.165 Sum_probs=144.9
Q ss_pred ccCcEEeccCCcccChhHHHHHHhcCCCCcEEEeccCCCCCHHHHHHHHhcCCCccEEEecCCCCCCcchhHHHHhhhhc
Q 046157 187 KRLKRINLSGNFFITDKSLMFLSSNLVLLREILIRDCDFITQSGISFAMRNSPNLVSISVNGIGIPTIDSCFKESFAYAR 266 (577)
Q Consensus 187 ~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 266 (577)
.+...|++++. .++. +..- -.++|+.|++.++. ++. ++. ...++|+.|++.++.+..+...+ .+
T Consensus 178 ~~~~~L~L~~~-~Lts--LP~~--Ip~~L~~L~Ls~N~-Lts--LP~--~l~~nL~~L~Ls~N~LtsLP~~l------~~ 241 (754)
T PRK15370 178 NNKTELRLKIL-GLTT--IPAC--IPEQITTLILDNNE-LKS--LPE--NLQGNIKTLYANSNQLTSIPATL------PD 241 (754)
T ss_pred cCceEEEeCCC-CcCc--CCcc--cccCCcEEEecCCC-CCc--CCh--hhccCCCEEECCCCccccCChhh------hc
Confidence 45777888763 2321 1110 13578888888753 332 111 12358999999888765443322 24
Q ss_pred CCCEEEcCCCCCChHHHHHHHhcCCCCcEEEecCCCCCCHHHHHHHHhcCCCcCeeecccccccChHHHHHHHhcCCCCC
Q 046157 267 GLCEIDLSNSFISDELLRLLGEACLPLKKLVLSHCYNFTLAGISFLLSKYQSLEHLNLEAANFLEDESMIDLSKFLTSLN 346 (577)
Q Consensus 267 ~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~ 346 (577)
+|+.|++++|.+..- ...+ ..+|+.|+++++.... ++. ...++|+.|+++++. ++... . ...++|+
T Consensus 242 ~L~~L~Ls~N~L~~L-P~~l---~s~L~~L~Ls~N~L~~---LP~--~l~~sL~~L~Ls~N~-Lt~LP--~--~lp~sL~ 307 (754)
T PRK15370 242 TIQEMELSINRITEL-PERL---PSALQSLDLFHNKISC---LPE--NLPEELRYLSVYDNS-IRTLP--A--HLPSGIT 307 (754)
T ss_pred cccEEECcCCccCcC-ChhH---hCCCCEEECcCCccCc---ccc--ccCCCCcEEECCCCc-cccCc--c--cchhhHH
Confidence 788899988876531 1112 2478889888653221 211 123578999998876 33211 0 0123577
Q ss_pred EEeecCCCCCChHHHHHHHhhCCCCCeEEeeeccCCCCcccccccCCCCccEEEcCCCCCCCHHHHHHHHhhCCCccEEe
Q 046157 347 FIDLGFCAKLTNSTFFTILRECPLLSEIKMETTNLGLDDFTTPLVINPQVKSLHLARNGNLSDESLKKLAILCPNLEVID 426 (577)
Q Consensus 347 ~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~ 426 (577)
.|+++++. ++... . ...++|+.|++.+|.+..- +..+ .++|+.|++++|. ++.. .. ...++|+.|+
T Consensus 308 ~L~Ls~N~-Lt~LP--~--~l~~sL~~L~Ls~N~Lt~L--P~~l--~~sL~~L~Ls~N~-L~~L--P~--~lp~~L~~Ld 373 (754)
T PRK15370 308 HLNVQSNS-LTALP--E--TLPPGLKTLEAGENALTSL--PASL--PPELQVLDVSKNQ-ITVL--PE--TLPPTITTLD 373 (754)
T ss_pred HHHhcCCc-cccCC--c--cccccceeccccCCccccC--Chhh--cCcccEEECCCCC-CCcC--Ch--hhcCCcCEEE
Confidence 77777653 22110 0 1236788888888876432 2222 3689999998875 4421 11 1236899999
Q ss_pred cCCCCCCCHHHHHHHHhhCCCCcEEEccccccccccc-----ccccCCCceEEEccCCCCCHHHHHHH
Q 046157 427 LSHCLGITEEGIGEILKSCCEIKCLEIKRCRAVFDLG-----IDLELPKLEVLQASGSALNDHALKMI 489 (577)
Q Consensus 427 l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~-----~~~~~~~L~~L~l~~~~i~~~~~~~l 489 (577)
+++| .++... ..+. +.|+.|++++|. +.... .....|++..+++.+|.++...+..+
T Consensus 374 Ls~N-~Lt~LP-~~l~---~sL~~LdLs~N~-L~~LP~sl~~~~~~~~~l~~L~L~~Npls~~tl~~L 435 (754)
T PRK15370 374 VSRN-ALTNLP-ENLP---AALQIMQASRNN-LVRLPESLPHFRGEGPQPTRIIVEYNPFSERTIQNM 435 (754)
T ss_pred CCCC-cCCCCC-HhHH---HHHHHHhhccCC-cccCchhHHHHhhcCCCccEEEeeCCCccHHHHHHH
Confidence 9887 444211 1111 257788888876 33332 12345788899999988886655444
No 41
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.33 E-value=6.1e-07 Score=74.07 Aligned_cols=107 Identities=22% Similarity=0.347 Sum_probs=83.8
Q ss_pred CccEEecCCCCCCCHHHHHHHHhhCCCCcEEEcccccccccccccccCCCceEEEccCCCCCHHHHHHHHHhCCCccEEe
Q 046157 421 NLEVIDLSHCLGITEEGIGEILKSCCEIKCLEIKRCRAVFDLGIDLELPKLEVLQASGSALNDHALKMIANTCSRILHLD 500 (577)
Q Consensus 421 ~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~ 500 (577)
.++.++-+++ .+...++.+ +..++.++.|.+.+|. .+.|.++..+..-.++|+.|+
T Consensus 102 ~IeaVDAsds-~I~~eGle~-L~~l~~i~~l~l~~ck----------------------~~dD~~L~~l~~~~~~L~~L~ 157 (221)
T KOG3864|consen 102 KIEAVDASDS-SIMYEGLEH-LRDLRSIKSLSLANCK----------------------YFDDWCLERLGGLAPSLQDLD 157 (221)
T ss_pred eEEEEecCCc-hHHHHHHHH-Hhccchhhhheecccc----------------------chhhHHHHHhcccccchheee
Confidence 4677777776 677777777 6788888888888888 477888888888788999999
Q ss_pred cCCCCCCChhhHHHHHhhCCCCcEEEecCCCCCcH--HHHHHHHHhCCCCceec
Q 046157 501 LDNCLNVTTSGVKEVVEHCRTLREINLRWCDEVNV--DIVAWMVFSRPSLRKII 552 (577)
Q Consensus 501 l~~c~~l~~~~l~~~~~~~~~L~~L~l~~c~~~~~--~~~~~~~~~~~~L~~l~ 552 (577)
|++|++||+.|+..+ ..+++|+.|.+++-+.+.. .....+...+|+++..-
T Consensus 158 lsgC~rIT~~GL~~L-~~lknLr~L~l~~l~~v~~~e~~~~~Le~aLP~c~I~~ 210 (221)
T KOG3864|consen 158 LSGCPRITDGGLACL-LKLKNLRRLHLYDLPYVANLELVQRQLEEALPKCDIVG 210 (221)
T ss_pred ccCCCeechhHHHHH-HHhhhhHHHHhcCchhhhchHHHHHHHHHhCcccceec
Confidence 999999999998876 6689999999998777653 23345666778776653
No 42
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.32 E-value=4e-07 Score=79.63 Aligned_cols=240 Identities=18% Similarity=0.159 Sum_probs=130.5
Q ss_pred chhHHHHHhhcCCCcEeeccCCCCCCCCCCcCcccccccccccCHHHHHHHHHcCccCcEEeccCCcccChhHHHHHHhc
Q 046157 132 DSDLIAVAETCEFLEVLDISYPENDSSFLPQGFQNIQSFSFYITDSGIEALSMKLKRLKRINLSGNFFITDKSLMFLSSN 211 (577)
Q Consensus 132 ~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~ 211 (577)
..++..+...|.+|..|.+++.. .|++-.+++...+.+.- ..+.+|..+.++.|. .+.+..+...
T Consensus 171 k~d~~hildf~~~l~~l~vs~~~-----~p~~~sni~~~~l~f~l-------~~f~~l~~~~~s~~~---~~~i~~~~~~ 235 (490)
T KOG1259|consen 171 KYDFSHVLDFCTQLVALVVTPVK-----DPIDRSNIIPNRLSFNL-------NAFRNLKTLKFSALS---TENIVDIELL 235 (490)
T ss_pred ccchHHHHHhhhheeEEEecCCC-----CCCccccccccccccch-------HHhhhhheeeeeccc---hhheeceeec
Confidence 34566677778889999888766 45555555543322211 134677788887763 2333333334
Q ss_pred CCCCcEEEeccCCCCCHHHHHHHHhcCCCccEEEecCCCCCCcchhHHHHhhhhcCCCEEEcCCCCCChHHHHHHHhcCC
Q 046157 212 LVLLREILIRDCDFITQSGISFAMRNSPNLVSISVNGIGIPTIDSCFKESFAYARGLCEIDLSNSFISDELLRLLGEACL 291 (577)
Q Consensus 212 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~ 291 (577)
-|.|.++.+++........+ .|.-...+..+.............+..-..|+++++++|.++. +..-.+-.|
T Consensus 236 kptl~t~~v~~s~~~~~~~l------~pe~~~~D~~~~E~~t~~G~~~~~~dTWq~LtelDLS~N~I~~--iDESvKL~P 307 (490)
T KOG1259|consen 236 KPTLQTICVHNTTIQDVPSL------LPETILADPSGSEPSTSNGSALVSADTWQELTELDLSGNLITQ--IDESVKLAP 307 (490)
T ss_pred Cchhheeeeecccccccccc------cchhhhcCccCCCCCccCCceEEecchHhhhhhccccccchhh--hhhhhhhcc
Confidence 57777777765321111000 0111111111111111111111222334567888888876543 122223367
Q ss_pred CCcEEEecCCCCCCHHHHHHHHhcCCCcCeeecccccccChHHHHHHHhcCCCCCEEeecCCCCCChHHHHHHHhhCCCC
Q 046157 292 PLKKLVLSHCYNFTLAGISFLLSKYQSLEHLNLEAANFLEDESMIDLSKFLTSLNFIDLGFCAKLTNSTFFTILRECPLL 371 (577)
Q Consensus 292 ~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L 371 (577)
.++.|+++.+....-. . +..+++|++|+++++.. +. +......+.+.+.|.++++.--+-.++. .+-+|
T Consensus 308 kir~L~lS~N~i~~v~---n-La~L~~L~~LDLS~N~L-s~--~~Gwh~KLGNIKtL~La~N~iE~LSGL~----KLYSL 376 (490)
T KOG1259|consen 308 KLRRLILSQNRIRTVQ---N-LAELPQLQLLDLSGNLL-AE--CVGWHLKLGNIKTLKLAQNKIETLSGLR----KLYSL 376 (490)
T ss_pred ceeEEeccccceeeeh---h-hhhcccceEeecccchh-Hh--hhhhHhhhcCEeeeehhhhhHhhhhhhH----hhhhh
Confidence 8888888876543322 2 44577888888888762 21 2222223567888877764311112222 34567
Q ss_pred CeEEeeeccCCCCcccccccCCCCccEEEcCCCC
Q 046157 372 SEIKMETTNLGLDDFTTPLVINPQVKSLHLARNG 405 (577)
Q Consensus 372 ~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 405 (577)
+.|++.+|.+...+....++++|.|+.+.+.+++
T Consensus 377 vnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NP 410 (490)
T KOG1259|consen 377 VNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNP 410 (490)
T ss_pred eeccccccchhhHHHhcccccccHHHHHhhcCCC
Confidence 8888888877776667777788888888777765
No 43
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.24 E-value=1.3e-06 Score=72.20 Aligned_cols=85 Identities=20% Similarity=0.246 Sum_probs=76.6
Q ss_pred CceEEEccCCCCCHHHHHHHHHhCCCccEEecCCCCCCChhhHHHHHhhCCCCcEEEecCCCCCcHHHHHHHHHhCCCCc
Q 046157 470 KLEVLQASGSALNDHALKMIANTCSRILHLDLDNCLNVTTSGVKEVVEHCRTLREINLRWCDEVNVDIVAWMVFSRPSLR 549 (577)
Q Consensus 470 ~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~c~~l~~~~l~~~~~~~~~L~~L~l~~c~~~~~~~~~~~~~~~~~L~ 549 (577)
.++.++-+++.|..+++..+. .++.++.|.+.+|..+.|.++..+....++|+.|+|++|+.+++.++..+.+ +++|+
T Consensus 102 ~IeaVDAsds~I~~eGle~L~-~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~-lknLr 179 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLR-DLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLK-LKNLR 179 (221)
T ss_pred eEEEEecCCchHHHHHHHHHh-ccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHH-hhhhH
Confidence 467888888899999998876 5899999999999999999999998888999999999999999999998774 99999
Q ss_pred eeccCCC
Q 046157 550 KIIPPCG 556 (577)
Q Consensus 550 ~l~~~~~ 556 (577)
.|.+...
T Consensus 180 ~L~l~~l 186 (221)
T KOG3864|consen 180 RLHLYDL 186 (221)
T ss_pred HHHhcCc
Confidence 9988753
No 44
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.19 E-value=1.8e-06 Score=91.11 Aligned_cols=111 Identities=14% Similarity=0.082 Sum_probs=67.9
Q ss_pred cCccCcEEeccCCcccChhHHHHHHhcCCCCcEEEeccCCCCCHHHHHHHHhcCCCccEEEecCCCCCCcchhHHHHhhh
Q 046157 185 KLKRLKRINLSGNFFITDKSLMFLSSNLVLLREILIRDCDFITQSGISFAMRNSPNLVSISVNGIGIPTIDSCFKESFAY 264 (577)
Q Consensus 185 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 264 (577)
.+++|++|-+.++...-......++..+|.|+.|++++|.... .++..+..+-+|+.|++.++.+ ..++..+.+
T Consensus 543 ~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~--~LP~~I~~Li~LryL~L~~t~I----~~LP~~l~~ 616 (889)
T KOG4658|consen 543 ENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLS--KLPSSIGELVHLRYLDLSDTGI----SHLPSGLGN 616 (889)
T ss_pred CCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccC--cCChHHhhhhhhhcccccCCCc----cccchHHHH
Confidence 4567888877664320111122334568888888888754333 3445566778888888887765 356677777
Q ss_pred hcCCCEEEcCCCCCChHHHHHHHhcCCCCcEEEecCCC
Q 046157 265 ARGLCEIDLSNSFISDELLRLLGEACLPLKKLVLSHCY 302 (577)
Q Consensus 265 ~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~~ 302 (577)
+.+|.+|++..+..-... ..+...+++|++|.+....
T Consensus 617 Lk~L~~Lnl~~~~~l~~~-~~i~~~L~~Lr~L~l~~s~ 653 (889)
T KOG4658|consen 617 LKKLIYLNLEVTGRLESI-PGILLELQSLRVLRLPRSA 653 (889)
T ss_pred HHhhheeccccccccccc-cchhhhcccccEEEeeccc
Confidence 888888888775422211 2233336777777776644
No 45
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.09 E-value=1.3e-06 Score=76.63 Aligned_cols=130 Identities=16% Similarity=0.212 Sum_probs=61.9
Q ss_pred cCCCCccEEEcCCCCCCCHHHHHHHHhhCCCccEEecCCCCCCCHHHHHHHHhhCCCCcEEEcccccccccccccccCCC
Q 046157 391 VINPQVKSLHLARNGNLSDESLKKLAILCPNLEVIDLSHCLGITEEGIGEILKSCCEIKCLEIKRCRAVFDLGIDLELPK 470 (577)
Q Consensus 391 ~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~ 470 (577)
.....|+.++++++. ++. +..-.+..|.++.|+++++. +.. +.. +..+++|+.|+++++..-.-.++...+-+
T Consensus 281 dTWq~LtelDLS~N~-I~~--iDESvKL~Pkir~L~lS~N~-i~~--v~n-La~L~~L~~LDLS~N~Ls~~~Gwh~KLGN 353 (490)
T KOG1259|consen 281 DTWQELTELDLSGNL-ITQ--IDESVKLAPKLRRLILSQNR-IRT--VQN-LAELPQLQLLDLSGNLLAECVGWHLKLGN 353 (490)
T ss_pred chHhhhhhccccccc-hhh--hhhhhhhccceeEEeccccc-eee--ehh-hhhcccceEeecccchhHhhhhhHhhhcC
Confidence 334455556665543 221 11122334666666666652 322 111 44556666666666652222233345556
Q ss_pred ceEEEccCCCCCHHHHHHHHHhCCCccEEecCCCCCCCh-hhHHHHHhhCCCCcEEEecCCCC
Q 046157 471 LEVLQASGSALNDHALKMIANTCSRILHLDLDNCLNVTT-SGVKEVVEHCRTLREINLRWCDE 532 (577)
Q Consensus 471 L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~c~~l~~-~~l~~~~~~~~~L~~L~l~~c~~ 532 (577)
+++|.+++|.+.+- ..+. .+-+|..|+++++. |.. +.+.. ++++|-|+.+.+.+.|-
T Consensus 354 IKtL~La~N~iE~L--SGL~-KLYSLvnLDl~~N~-Ie~ldeV~~-IG~LPCLE~l~L~~NPl 411 (490)
T KOG1259|consen 354 IKTLKLAQNKIETL--SGLR-KLYSLVNLDLSSNQ-IEELDEVNH-IGNLPCLETLRLTGNPL 411 (490)
T ss_pred EeeeehhhhhHhhh--hhhH-hhhhheeccccccc-hhhHHHhcc-cccccHHHHHhhcCCCc
Confidence 66666666555432 1111 23456666666642 332 12222 25566666666666543
No 46
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.05 E-value=3.4e-06 Score=89.14 Aligned_cols=109 Identities=24% Similarity=0.086 Sum_probs=53.0
Q ss_pred CCCCcEEEeccCCCCCHHHHHHHHhcCCCccEEEecCCCCCCcchhHHHHhhhhcCCCEEEcCCCCCChHHHHHHHhcCC
Q 046157 212 LVLLREILIRDCDFITQSGISFAMRNSPNLVSISVNGIGIPTIDSCFKESFAYARGLCEIDLSNSFISDELLRLLGEACL 291 (577)
Q Consensus 212 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~ 291 (577)
+++|++|-+.....-.......++..+|.|+.|+++++. ....++..++.+-+|++|+++++.+.. +..-...+.
T Consensus 544 ~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~---~l~~LP~~I~~Li~LryL~L~~t~I~~--LP~~l~~Lk 618 (889)
T KOG4658|consen 544 NPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNS---SLSKLPSSIGELVHLRYLDLSDTGISH--LPSGLGNLK 618 (889)
T ss_pred CCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCC---ccCcCChHHhhhhhhhcccccCCCccc--cchHHHHHH
Confidence 455666655543210001111234556677777766532 233455556666666666666666541 111122244
Q ss_pred CCcEEEecCCCCCCHHHHHHHHhcCCCcCeeecccc
Q 046157 292 PLKKLVLSHCYNFTLAGISFLLSKYQSLEHLNLEAA 327 (577)
Q Consensus 292 ~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~ 327 (577)
.|.+|++........ +..+...+++|++|.+...
T Consensus 619 ~L~~Lnl~~~~~l~~--~~~i~~~L~~Lr~L~l~~s 652 (889)
T KOG4658|consen 619 KLIYLNLEVTGRLES--IPGILLELQSLRVLRLPRS 652 (889)
T ss_pred hhheecccccccccc--ccchhhhcccccEEEeecc
Confidence 566666655433221 1223344666666666554
No 47
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=97.76 E-value=5.9e-06 Score=75.45 Aligned_cols=99 Identities=14% Similarity=0.050 Sum_probs=56.3
Q ss_pred HhcCCCcCeeecccccccChHHHHHHHhcCCCCCEEeecCCCCCChHHHHHHHhhCCCCCeEEeeeccCCCCcccccccC
Q 046157 313 LSKYQSLEHLNLEAANFLEDESMIDLSKFLTSLNFIDLGFCAKLTNSTFFTILRECPLLSEIKMETTNLGLDDFTTPLVI 392 (577)
Q Consensus 313 ~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~ 392 (577)
++.+++|+.|+++++. ++...-.++ .....++.|.+..+. +.. .-..+.+.+..|+.|++++|.+..-. +..|..
T Consensus 270 f~~L~~L~~lnlsnN~-i~~i~~~aF-e~~a~l~eL~L~~N~-l~~-v~~~~f~~ls~L~tL~L~~N~it~~~-~~aF~~ 344 (498)
T KOG4237|consen 270 FKKLPNLRKLNLSNNK-ITRIEDGAF-EGAAELQELYLTRNK-LEF-VSSGMFQGLSGLKTLSLYDNQITTVA-PGAFQT 344 (498)
T ss_pred HhhcccceEeccCCCc-cchhhhhhh-cchhhhhhhhcCcch-HHH-HHHHhhhccccceeeeecCCeeEEEe-cccccc
Confidence 4566777777777776 333322222 224556666665532 111 11223456777888888888765544 556666
Q ss_pred CCCccEEEcCCCCCCCHHHHHHHH
Q 046157 393 NPQVKSLHLARNGNLSDESLKKLA 416 (577)
Q Consensus 393 ~~~L~~L~l~~~~~l~~~~l~~l~ 416 (577)
...|..|.+-.++..-+-.+.++.
T Consensus 345 ~~~l~~l~l~~Np~~CnC~l~wl~ 368 (498)
T KOG4237|consen 345 LFSLSTLNLLSNPFNCNCRLAWLG 368 (498)
T ss_pred cceeeeeehccCcccCccchHHHH
Confidence 777777777666644444444443
No 48
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.44 E-value=3.1e-05 Score=76.63 Aligned_cols=216 Identities=18% Similarity=0.146 Sum_probs=119.3
Q ss_pred HHHHHhcCCCCcEEEecCCCCCCHHHHHHHHhcCCCcCeeecccccccChHHHHHHHhcCCCCCEEeecCCCCCChHHHH
Q 046157 283 LRLLGEACLPLKKLVLSHCYNFTLAGISFLLSKYQSLEHLNLEAANFLEDESMIDLSKFLTSLNFIDLGFCAKLTNSTFF 362 (577)
Q Consensus 283 l~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~ 362 (577)
++.+..-+++++.+.+.....-...+-.. +-.+.+|++|.+.+++.-+..++..+.. +|++|-- . -+-.++.
T Consensus 76 Lq~i~d~lqkt~~lkl~~~pa~~pt~pi~-ifpF~sLr~LElrg~~L~~~~GL~~lr~---qLe~LIC---~-~Sl~Al~ 147 (1096)
T KOG1859|consen 76 LQRILDFLQKTKVLKLLPSPARDPTEPIS-IFPFRSLRVLELRGCDLSTAKGLQELRH---QLEKLIC---H-NSLDALR 147 (1096)
T ss_pred HHHHHHHHhhheeeeecccCCCCCCCCce-eccccceeeEEecCcchhhhhhhHHHHH---hhhhhhh---h-ccHHHHH
Confidence 44444445566666554432221111001 2345678888888877433334444332 3444421 1 1223344
Q ss_pred HHHhhCCCCCeEEeeeccCCCCcccccccCCCCccEEEcCCCCCCCHHHHHHHHhhCCCccEEecCCCCCCCHHHHHHHH
Q 046157 363 TILRECPLLSEIKMETTNLGLDDFTTPLVINPQVKSLHLARNGNLSDESLKKLAILCPNLEVIDLSHCLGITEEGIGEIL 442 (577)
Q Consensus 363 ~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~ 442 (577)
.++..|-. .+..-...-+|...+.++|. +. .+..-.+.+|.|+.|+++++ ++++.. .+
T Consensus 148 ~v~ascgg---------------d~~ns~~Wn~L~~a~fsyN~-L~--~mD~SLqll~ale~LnLshN-k~~~v~---~L 205 (1096)
T KOG1859|consen 148 HVFASCGG---------------DISNSPVWNKLATASFSYNR-LV--LMDESLQLLPALESLNLSHN-KFTKVD---NL 205 (1096)
T ss_pred HHHHHhcc---------------ccccchhhhhHhhhhcchhh-HH--hHHHHHHHHHHhhhhccchh-hhhhhH---HH
Confidence 44433311 01111123355555555544 21 11222234588999999987 455422 47
Q ss_pred hhCCCCcEEEccccccccccc-ccccCCCceEEEccCCCCCHHHHHHHHHhCCCccEEecCCCCCCChhhHHHHHhhCCC
Q 046157 443 KSCCEIKCLEIKRCRAVFDLG-IDLELPKLEVLQASGSALNDHALKMIANTCSRILHLDLDNCLNVTTSGVKEVVEHCRT 521 (577)
Q Consensus 443 ~~~~~L~~L~l~~~~~l~~~~-~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~c~~l~~~~l~~~~~~~~~ 521 (577)
..|++|++|+|++|. +...+ +...-.+|+.|.+++|.++. +..+. ++.+|+.|+++++- |....-...+..+..
T Consensus 206 r~l~~LkhLDlsyN~-L~~vp~l~~~gc~L~~L~lrnN~l~t--L~gie-~LksL~~LDlsyNl-l~~hseL~pLwsLs~ 280 (1096)
T KOG1859|consen 206 RRLPKLKHLDLSYNC-LRHVPQLSMVGCKLQLLNLRNNALTT--LRGIE-NLKSLYGLDLSYNL-LSEHSELEPLWSLSS 280 (1096)
T ss_pred Hhcccccccccccch-hccccccchhhhhheeeeecccHHHh--hhhHH-hhhhhhccchhHhh-hhcchhhhHHHHHHH
Confidence 789999999999987 44443 33333349999999988765 22222 46899999999853 444333334466778
Q ss_pred CcEEEecCCCCC
Q 046157 522 LREINLRWCDEV 533 (577)
Q Consensus 522 L~~L~l~~c~~~ 533 (577)
|+.|++.|.|--
T Consensus 281 L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 281 LIVLWLEGNPLC 292 (1096)
T ss_pred HHHHhhcCCccc
Confidence 999999997654
No 49
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=97.36 E-value=2.4e-06 Score=68.46 Aligned_cols=149 Identities=11% Similarity=0.132 Sum_probs=69.4
Q ss_pred CCCCCeEEeeeccCCCCcccccccCCCCccEEEcCCCCCCCHHHHHHHHhhCCCccEEecCCCCCCCHHHHHHHHhhCCC
Q 046157 368 CPLLSEIKMETTNLGLDDFTTPLVINPQVKSLHLARNGNLSDESLKKLAILCPNLEVIDLSHCLGITEEGIGEILKSCCE 447 (577)
Q Consensus 368 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 447 (577)
..+++.|.++.|.+..- +..+..+.+|+.|.+++++ +++ +..-...+|+|+.|+++-+. +. .+..-+..+|.
T Consensus 32 ~s~ITrLtLSHNKl~~v--ppnia~l~nlevln~~nnq-ie~--lp~~issl~klr~lnvgmnr-l~--~lprgfgs~p~ 103 (264)
T KOG0617|consen 32 MSNITRLTLSHNKLTVV--PPNIAELKNLEVLNLSNNQ-IEE--LPTSISSLPKLRILNVGMNR-LN--ILPRGFGSFPA 103 (264)
T ss_pred hhhhhhhhcccCceeec--CCcHHHhhhhhhhhcccch-hhh--cChhhhhchhhhheecchhh-hh--cCccccCCCch
Confidence 34556666666654332 3445555666666665544 222 11112234566666654331 11 01122344566
Q ss_pred CcEEEccccccccccc---ccccCCCceEEEccCCCCCHHHHHHHHHhCCCccEEecCCCCCCChhhHHHHHhhCCCCcE
Q 046157 448 IKCLEIKRCRAVFDLG---IDLELPKLEVLQASGSALNDHALKMIANTCSRILHLDLDNCLNVTTSGVKEVVEHCRTLRE 524 (577)
Q Consensus 448 L~~L~l~~~~~l~~~~---~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~c~~l~~~~l~~~~~~~~~L~~ 524 (577)
|+.|+++++. +.... -.+.+..|+-|.++.|.+.-.. .. ...+.+|+.|.+.++.-++. ..=++.+..|++
T Consensus 104 levldltynn-l~e~~lpgnff~m~tlralyl~dndfe~lp-~d-vg~lt~lqil~lrdndll~l---pkeig~lt~lre 177 (264)
T KOG0617|consen 104 LEVLDLTYNN-LNENSLPGNFFYMTTLRALYLGDNDFEILP-PD-VGKLTNLQILSLRDNDLLSL---PKEIGDLTRLRE 177 (264)
T ss_pred hhhhhccccc-cccccCCcchhHHHHHHHHHhcCCCcccCC-hh-hhhhcceeEEeeccCchhhC---cHHHHHHHHHHH
Confidence 6666666554 22221 2234455555555555442211 01 11345666666666543331 111244556666
Q ss_pred EEecCC
Q 046157 525 INLRWC 530 (577)
Q Consensus 525 L~l~~c 530 (577)
|.+.+.
T Consensus 178 lhiqgn 183 (264)
T KOG0617|consen 178 LHIQGN 183 (264)
T ss_pred Hhcccc
Confidence 666664
No 50
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.30 E-value=5.5e-05 Score=65.93 Aligned_cols=81 Identities=14% Similarity=0.137 Sum_probs=41.3
Q ss_pred CCccEEecCCCCCCCHHHHHHHHhhCCCCcEEEcccccccccccccccCCCceEEEccCCCCCHHHHHHHHHhCCCccEE
Q 046157 420 PNLEVIDLSHCLGITEEGIGEILKSCCEIKCLEIKRCRAVFDLGIDLELPKLEVLQASGSALNDHALKMIANTCSRILHL 499 (577)
Q Consensus 420 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L 499 (577)
.+.++|+..+| .++|.. +...+|.|+.|.|+-|+ ++.......|.+|++|+|..|.|.+..-....+++|+|+.|
T Consensus 19 ~~vkKLNcwg~-~L~DIs---ic~kMp~lEVLsLSvNk-IssL~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~L 93 (388)
T KOG2123|consen 19 ENVKKLNCWGC-GLDDIS---ICEKMPLLEVLSLSVNK-ISSLAPLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTL 93 (388)
T ss_pred HHhhhhcccCC-CccHHH---HHHhcccceeEEeeccc-cccchhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhH
Confidence 35556666665 455533 24455666666665554 44444444555555555555555443333333345555555
Q ss_pred ecCCCC
Q 046157 500 DLDNCL 505 (577)
Q Consensus 500 ~l~~c~ 505 (577)
.|..+|
T Consensus 94 WL~ENP 99 (388)
T KOG2123|consen 94 WLDENP 99 (388)
T ss_pred hhccCC
Confidence 555444
No 51
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.24 E-value=9.8e-05 Score=64.42 Aligned_cols=102 Identities=22% Similarity=0.249 Sum_probs=60.4
Q ss_pred CCCcEEEcccccccccccccccCCCceEEEccCCCCCHHHHHHHHHhCCCccEEecCCCCCCChhhHHHHHhhCCCCcEE
Q 046157 446 CEIKCLEIKRCRAVFDLGIDLELPKLEVLQASGSALNDHALKMIANTCSRILHLDLDNCLNVTTSGVKEVVEHCRTLREI 525 (577)
Q Consensus 446 ~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~c~~l~~~~l~~~~~~~~~L~~L 525 (577)
.+.++|+..+|. +.++++...+|.|+.|.|+-|.|+.- ..+ ..|.+|++|.|..+. |.+..=...+.++|+|+.|
T Consensus 19 ~~vkKLNcwg~~-L~DIsic~kMp~lEVLsLSvNkIssL--~pl-~rCtrLkElYLRkN~-I~sldEL~YLknlpsLr~L 93 (388)
T KOG2123|consen 19 ENVKKLNCWGCG-LDDISICEKMPLLEVLSLSVNKISSL--APL-QRCTRLKELYLRKNC-IESLDELEYLKNLPSLRTL 93 (388)
T ss_pred HHhhhhcccCCC-ccHHHHHHhcccceeEEeeccccccc--hhH-HHHHHHHHHHHHhcc-cccHHHHHHHhcCchhhhH
Confidence 355666666666 66666777777777777777766542 222 246777777776532 4433223334667777777
Q ss_pred EecCCCCCcH---HHHHHHHHhCCCCceec
Q 046157 526 NLRWCDEVNV---DIVAWMVFSRPSLRKII 552 (577)
Q Consensus 526 ~l~~c~~~~~---~~~~~~~~~~~~L~~l~ 552 (577)
+|...|-... .+-..+...+|+|++|+
T Consensus 94 WL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 94 WLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred hhccCCcccccchhHHHHHHHHcccchhcc
Confidence 7776554432 33344556677777764
No 52
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=97.20 E-value=0.00016 Score=49.08 Aligned_cols=12 Identities=33% Similarity=0.357 Sum_probs=5.8
Q ss_pred CCCccEEecCCC
Q 046157 493 CSRILHLDLDNC 504 (577)
Q Consensus 493 ~~~L~~L~l~~c 504 (577)
+++|++|++++|
T Consensus 48 l~~L~~L~l~~N 59 (61)
T PF13855_consen 48 LPNLRYLDLSNN 59 (61)
T ss_dssp STTESEEEETSS
T ss_pred CCCCCEEeCcCC
Confidence 444555555443
No 53
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.09 E-value=7.3e-05 Score=74.08 Aligned_cols=38 Identities=18% Similarity=0.195 Sum_probs=19.2
Q ss_pred HhcCCCccEEEecCCCCCCcchhHHHHhhhhcCCCEEEcCCCC
Q 046157 235 MRNSPNLVSISVNGIGIPTIDSCFKESFAYARGLCEIDLSNSF 277 (577)
Q Consensus 235 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 277 (577)
++-.+.++.|+++.+.+. -.+.+..+++|++|||++|.
T Consensus 183 Lqll~ale~LnLshNk~~-----~v~~Lr~l~~LkhLDlsyN~ 220 (1096)
T KOG1859|consen 183 LQLLPALESLNLSHNKFT-----KVDNLRRLPKLKHLDLSYNC 220 (1096)
T ss_pred HHHHHHhhhhccchhhhh-----hhHHHHhcccccccccccch
Confidence 333455555665555431 12244555666666666553
No 54
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=97.09 E-value=0.00016 Score=49.09 Aligned_cols=36 Identities=25% Similarity=0.282 Sum_probs=16.3
Q ss_pred CCCccEEecCCCCCCChhhHHHHHhhCCCCcEEEecCC
Q 046157 493 CSRILHLDLDNCLNVTTSGVKEVVEHCRTLREINLRWC 530 (577)
Q Consensus 493 ~~~L~~L~l~~c~~l~~~~l~~~~~~~~~L~~L~l~~c 530 (577)
+++|++|++++| .++...- ..+.++++|++|++++|
T Consensus 24 l~~L~~L~l~~N-~l~~i~~-~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 24 LPNLETLDLSNN-NLTSIPP-DAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp GTTESEEEETSS-SESEEET-TTTTTSTTESEEEETSS
T ss_pred CCCCCEeEccCC-ccCccCH-HHHcCCCCCCEEeCcCC
Confidence 345555555543 2332211 12345555555555554
No 55
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=96.96 E-value=0.00094 Score=35.85 Aligned_cols=23 Identities=26% Similarity=0.585 Sum_probs=11.2
Q ss_pred CCCCcEEEecCCCCCcHHHHHHH
Q 046157 519 CRTLREINLRWCDEVNVDIVAWM 541 (577)
Q Consensus 519 ~~~L~~L~l~~c~~~~~~~~~~~ 541 (577)
|++|++|++++|++++|.++..+
T Consensus 1 c~~L~~L~l~~C~~itD~gl~~l 23 (26)
T smart00367 1 CPNLRELDLSGCTNITDEGLQAL 23 (26)
T ss_pred CCCCCEeCCCCCCCcCHHHHHHH
Confidence 34455555555555555444443
No 56
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=96.84 E-value=0.0013 Score=35.35 Aligned_cols=24 Identities=33% Similarity=0.811 Sum_probs=20.9
Q ss_pred CCCccEEecCCCCCCChhhHHHHH
Q 046157 493 CSRILHLDLDNCLNVTTSGVKEVV 516 (577)
Q Consensus 493 ~~~L~~L~l~~c~~l~~~~l~~~~ 516 (577)
|++|++|++++|++++|.++..+.
T Consensus 1 c~~L~~L~l~~C~~itD~gl~~l~ 24 (26)
T smart00367 1 CPNLRELDLSGCTNITDEGLQALA 24 (26)
T ss_pred CCCCCEeCCCCCCCcCHHHHHHHh
Confidence 578999999999999999988764
No 57
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=96.83 E-value=1.4e-05 Score=64.09 Aligned_cols=129 Identities=20% Similarity=0.290 Sum_probs=70.6
Q ss_pred CCCcCeeecccccccChHHHHHHHhcCCCCCEEeecCCC-CCChHHHHHHHhhCCCCCeEEeeeccCCCCcccccccCCC
Q 046157 316 YQSLEHLNLEAANFLEDESMIDLSKFLTSLNFIDLGFCA-KLTNSTFFTILRECPLLSEIKMETTNLGLDDFTTPLVINP 394 (577)
Q Consensus 316 ~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~-~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 394 (577)
+.+|+.|++.++. ++ +....++ .++.|+.|+++-.. .+...++ ..+|.|+.|++..|+......+..|..+.
T Consensus 55 l~nlevln~~nnq-ie-~lp~~is-sl~klr~lnvgmnrl~~lprgf----gs~p~levldltynnl~e~~lpgnff~m~ 127 (264)
T KOG0617|consen 55 LKNLEVLNLSNNQ-IE-ELPTSIS-SLPKLRILNVGMNRLNILPRGF----GSFPALEVLDLTYNNLNENSLPGNFFYMT 127 (264)
T ss_pred hhhhhhhhcccch-hh-hcChhhh-hchhhhheecchhhhhcCcccc----CCCchhhhhhccccccccccCCcchhHHH
Confidence 4455666665554 21 1111222 25566666654322 1122222 24677778888887777777677777777
Q ss_pred CccEEEcCCCCCCCHHHHHHHHhhCCCccEEecCCCCCCCHHHHHHHHhhCCCCcEEEccccc
Q 046157 395 QVKSLHLARNGNLSDESLKKLAILCPNLEVIDLSHCLGITEEGIGEILKSCCEIKCLEIKRCR 457 (577)
Q Consensus 395 ~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 457 (577)
.|+.|+++.+. +. .+..-...+.+|+.|.+.++.-++ +..-+..+..|++|.+.++.
T Consensus 128 tlralyl~dnd-fe--~lp~dvg~lt~lqil~lrdndll~---lpkeig~lt~lrelhiqgnr 184 (264)
T KOG0617|consen 128 TLRALYLGDND-FE--ILPPDVGKLTNLQILSLRDNDLLS---LPKEIGDLTRLRELHIQGNR 184 (264)
T ss_pred HHHHHHhcCCC-cc--cCChhhhhhcceeEEeeccCchhh---CcHHHHHHHHHHHHhcccce
Confidence 78888877654 11 111112245677777777653222 22334556677777777766
No 58
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.82 E-value=0.0022 Score=53.52 Aligned_cols=106 Identities=21% Similarity=0.284 Sum_probs=69.5
Q ss_pred CCCCCeEEeeeccCCCCcccccccCCCCccEEEcCCCCCCCHHHHHHHHhhCCCccEEecCCCCCCCHH-HHHHHHhhCC
Q 046157 368 CPLLSEIKMETTNLGLDDFTTPLVINPQVKSLHLARNGNLSDESLKKLAILCPNLEVIDLSHCLGITEE-GIGEILKSCC 446 (577)
Q Consensus 368 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~~~ 446 (577)
..+...+++.+|++.. ...+..++.|..|.++++. ++...- .+...+|+|..|.+.++. +-.. .+.. +..||
T Consensus 41 ~d~~d~iDLtdNdl~~---l~~lp~l~rL~tLll~nNr-It~I~p-~L~~~~p~l~~L~LtnNs-i~~l~dl~p-La~~p 113 (233)
T KOG1644|consen 41 LDQFDAIDLTDNDLRK---LDNLPHLPRLHTLLLNNNR-ITRIDP-DLDTFLPNLKTLILTNNS-IQELGDLDP-LASCP 113 (233)
T ss_pred ccccceecccccchhh---cccCCCccccceEEecCCc-ceeecc-chhhhccccceEEecCcc-hhhhhhcch-hccCC
Confidence 3455566666665543 4456677788888888766 544322 244567899999998873 3322 2333 56799
Q ss_pred CCcEEEccccccccccc----ccccCCCceEEEccCCC
Q 046157 447 EIKCLEIKRCRAVFDLG----IDLELPKLEVLQASGSA 480 (577)
Q Consensus 447 ~L~~L~l~~~~~l~~~~----~~~~~~~L~~L~l~~~~ 480 (577)
+|+.|.+-+++--.... +...+|+|++||+.+-.
T Consensus 114 ~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kVt 151 (233)
T KOG1644|consen 114 KLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKVT 151 (233)
T ss_pred ccceeeecCCchhcccCceeEEEEecCcceEeehhhhh
Confidence 99999998888332222 44578999999998843
No 59
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=96.81 E-value=0.00045 Score=68.18 Aligned_cols=118 Identities=21% Similarity=0.328 Sum_probs=61.8
Q ss_pred CcEeeccCCCCCCCCCCcCcccccccccccCHHHHHHHHHc---CccCcEEeccCCcccChhHHHHHHhcCC----CCcE
Q 046157 145 LEVLDISYPENDSSFLPQGFQNIQSFSFYITDSGIEALSMK---LKRLKRINLSGNFFITDKSLMFLSSNLV----LLRE 217 (577)
Q Consensus 145 L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~---~~~L~~L~l~~~~~~~~~~~~~l~~~~~----~L~~ 217 (577)
+..+.+.+|. +.+.+...+... .+.|+.|+++++ .+.+.+...+....+ .++.
T Consensus 89 l~~L~L~~~~-------------------l~~~~~~~l~~~l~t~~~L~~L~l~~n-~l~~~g~~~l~~~l~~~~~~l~~ 148 (478)
T KOG4308|consen 89 LLHLSLANNR-------------------LGDRGAEELAQALKTLPTLGQLDLSGN-NLGDEGARLLCEGLRLPQCLLQT 148 (478)
T ss_pred HHHhhhhhCc-------------------cccchHHHHHHHhcccccHhHhhcccC-CCccHhHHHHHhhcccchHHHHH
Confidence 6778888887 666666666554 467888899885 555777666654333 3455
Q ss_pred EEeccCCCCCHHH---HHHHHhcCCCccEEEecCCCCCC-cchhHHHHhh----hhcCCCEEEcCCCCCChHHH
Q 046157 218 ILIRDCDFITQSG---ISFAMRNSPNLVSISVNGIGIPT-IDSCFKESFA----YARGLCEIDLSNSFISDELL 283 (577)
Q Consensus 218 L~l~~~~~~~~~~---~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~----~~~~L~~L~l~~~~~~~~~l 283 (577)
|.+..|.. +..+ +...+.....++.+++..+.+.. ........+. ...++++|++.++.+++...
T Consensus 149 L~l~~c~l-~~~g~~~l~~~L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c 221 (478)
T KOG4308|consen 149 LELVSCSL-TSEGAAPLAAVLEKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSC 221 (478)
T ss_pred HHhhcccc-cccchHHHHHHHhcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHH
Confidence 55555532 2222 22222334556666665555421 1111122222 24455555555555544433
No 60
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=96.52 E-value=0.0031 Score=38.99 Aligned_cols=13 Identities=23% Similarity=0.312 Sum_probs=6.3
Q ss_pred hCCCccEEecCCC
Q 046157 492 TCSRILHLDLDNC 504 (577)
Q Consensus 492 ~~~~L~~L~l~~c 504 (577)
.+++|+.|++++|
T Consensus 22 ~l~~L~~L~l~~N 34 (44)
T PF12799_consen 22 NLPNLETLNLSNN 34 (44)
T ss_dssp TCTTSSEEEETSS
T ss_pred CCCCCCEEEecCC
Confidence 3445555555444
No 61
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=96.32 E-value=0.0032 Score=62.29 Aligned_cols=114 Identities=22% Similarity=0.334 Sum_probs=68.2
Q ss_pred CCCCccEEEcCCCCCCCHHHHHHHHh---hCCC-ccEEecCCCCCCCHHHHHHHHhhCC----CCcEEEccccccccccc
Q 046157 392 INPQVKSLHLARNGNLSDESLKKLAI---LCPN-LEVIDLSHCLGITEEGIGEILKSCC----EIKCLEIKRCRAVFDLG 463 (577)
Q Consensus 392 ~~~~L~~L~l~~~~~l~~~~l~~l~~---~~~~-L~~L~l~~~~~~~~~~~~~~~~~~~----~L~~L~l~~~~~l~~~~ 463 (577)
...++++|.+.+|. +++.....+.. ..+. +..|++..+ .+.+.++..+...++ .++.+++..|+ +++.+
T Consensus 202 ~~~~le~L~L~~~~-~t~~~c~~l~~~l~~~~~~~~el~l~~n-~l~d~g~~~L~~~l~~~~~~l~~l~l~~ns-i~~~~ 278 (478)
T KOG4308|consen 202 PLSSLETLKLSRCG-VTSSSCALLDEVLASGESLLRELDLASN-KLGDVGVEKLLPCLSVLSETLRVLDLSRNS-ITEKG 278 (478)
T ss_pred ccccHHHHhhhhcC-cChHHHHHHHHHHhccchhhHHHHHHhc-CcchHHHHHHHHHhcccchhhhhhhhhcCC-ccccc
Confidence 46677888887766 55554444332 2334 566888766 677666666555443 45778888877 33333
Q ss_pred ------ccccCCCceEEEccCCCCCHHHHHHHHHh---CCCccEEecCCCCCCC
Q 046157 464 ------IDLELPKLEVLQASGSALNDHALKMIANT---CSRILHLDLDNCLNVT 508 (577)
Q Consensus 464 ------~~~~~~~L~~L~l~~~~i~~~~~~~l~~~---~~~L~~L~l~~c~~l~ 508 (577)
....++.++++.++.|.+++.+...+.+. ...+.++.+.++...+
T Consensus 279 ~~~L~~~l~~~~~l~~l~l~~n~l~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~ 332 (478)
T KOG4308|consen 279 VRDLAEVLVSCRQLEELSLSNNPLTDYGVELLLEALERKTPLLHLVLGGTGKGT 332 (478)
T ss_pred hHHHHHHHhhhHHHHHhhcccCccccHHHHHHHHHhhhcccchhhhccccCccc
Confidence 22356688888888888877765554432 2345555555544443
No 62
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.29 E-value=0.0011 Score=57.79 Aligned_cols=64 Identities=17% Similarity=0.245 Sum_probs=26.4
Q ss_pred HHHhCCCccEEecCCCCCCChhhHHHHHhhCCCCcEEEecCCCCCc-HHHHHHHHHhCCCCceecc
Q 046157 489 IANTCSRILHLDLDNCLNVTTSGVKEVVEHCRTLREINLRWCDEVN-VDIVAWMVFSRPSLRKIIP 553 (577)
Q Consensus 489 l~~~~~~L~~L~l~~c~~l~~~~l~~~~~~~~~L~~L~l~~c~~~~-~~~~~~~~~~~~~L~~l~~ 553 (577)
++..+|+|++|.++++ ++.+..--.-+..+.+|..|++.+|+-.. +++-..++.-.|+|+.|+.
T Consensus 86 l~e~~P~l~~l~ls~N-ki~~lstl~pl~~l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~ 150 (260)
T KOG2739|consen 86 LAEKAPNLKVLNLSGN-KIKDLSTLRPLKELENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDG 150 (260)
T ss_pred hhhhCCceeEEeecCC-ccccccccchhhhhcchhhhhcccCCccccccHHHHHHHHhhhhccccc
Confidence 3334455555555553 23321111111334445555555553332 2233344444555555543
No 63
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.28 E-value=0.0024 Score=53.38 Aligned_cols=105 Identities=19% Similarity=0.267 Sum_probs=66.8
Q ss_pred CCCccEEecCCCCCCCHHHHHHHHhhCCCCcEEEccccccccccc--ccccCCCceEEEccCCCCCHHH-HHHHHHhCCC
Q 046157 419 CPNLEVIDLSHCLGITEEGIGEILKSCCEIKCLEIKRCRAVFDLG--IDLELPKLEVLQASGSALNDHA-LKMIANTCSR 495 (577)
Q Consensus 419 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~--~~~~~~~L~~L~l~~~~i~~~~-~~~l~~~~~~ 495 (577)
..+...++++++.... ...+.+++.|..|.+++|. ++..+ +...+|+|+.|.+++|++..-+ +..++ .||+
T Consensus 41 ~d~~d~iDLtdNdl~~----l~~lp~l~rL~tLll~nNr-It~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa-~~p~ 114 (233)
T KOG1644|consen 41 LDQFDAIDLTDNDLRK----LDNLPHLPRLHTLLLNNNR-ITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLA-SCPK 114 (233)
T ss_pred ccccceecccccchhh----cccCCCccccceEEecCCc-ceeeccchhhhccccceEEecCcchhhhhhcchhc-cCCc
Confidence 4567777887763222 1225567788888888887 66654 4456788888888888776532 33333 4788
Q ss_pred ccEEecCCCCCCCh-hhHH-HHHhhCCCCcEEEecCC
Q 046157 496 ILHLDLDNCLNVTT-SGVK-EVVEHCRTLREINLRWC 530 (577)
Q Consensus 496 L~~L~l~~c~~l~~-~~l~-~~~~~~~~L~~L~l~~c 530 (577)
|+.|.+-+++ ++. ..-. .++..+|+|+.||+.+-
T Consensus 115 L~~Ltll~Np-v~~k~~YR~yvl~klp~l~~LDF~kV 150 (233)
T KOG1644|consen 115 LEYLTLLGNP-VEHKKNYRLYVLYKLPSLRTLDFQKV 150 (233)
T ss_pred cceeeecCCc-hhcccCceeEEEEecCcceEeehhhh
Confidence 8888887765 332 1111 12356788888887764
No 64
>PRK15386 type III secretion protein GogB; Provisional
Probab=96.04 E-value=0.0072 Score=57.63 Aligned_cols=56 Identities=14% Similarity=0.213 Sum_probs=29.3
Q ss_pred CCCCcEEEecCCCCCCHHHHHHHHhcCCCcCeeecccccccChHHHHHHHhcCCCCCEEeecCCCC
Q 046157 290 CLPLKKLVLSHCYNFTLAGISFLLSKYQSLEHLNLEAANFLEDESMIDLSKFLTSLNFIDLGFCAK 355 (577)
Q Consensus 290 ~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~ 355 (577)
+.++++|++++|.... ++ .-.++|++|.+++|..++.. .. ...++|++|.+++|..
T Consensus 51 ~~~l~~L~Is~c~L~s---LP---~LP~sLtsL~Lsnc~nLtsL--P~--~LP~nLe~L~Ls~Cs~ 106 (426)
T PRK15386 51 ARASGRLYIKDCDIES---LP---VLPNELTEITIENCNNLTTL--PG--SIPEGLEKLTVCHCPE 106 (426)
T ss_pred hcCCCEEEeCCCCCcc---cC---CCCCCCcEEEccCCCCcccC--Cc--hhhhhhhheEccCccc
Confidence 5777778877773211 11 11236777777766543211 11 1124677777776643
No 65
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.04 E-value=0.0013 Score=57.29 Aligned_cols=18 Identities=50% Similarity=0.665 Sum_probs=9.1
Q ss_pred HHHHHHcCccCcEEeccC
Q 046157 179 IEALSMKLKRLKRINLSG 196 (577)
Q Consensus 179 ~~~l~~~~~~L~~L~l~~ 196 (577)
+..++..+|+|++|++++
T Consensus 83 l~vl~e~~P~l~~l~ls~ 100 (260)
T KOG2739|consen 83 LEVLAEKAPNLKVLNLSG 100 (260)
T ss_pred ceehhhhCCceeEEeecC
Confidence 334444445555555555
No 66
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional
Probab=95.91 E-value=0.0054 Score=57.69 Aligned_cols=36 Identities=17% Similarity=0.242 Sum_probs=33.6
Q ss_pred CCCChHHHHHHHHhcCCccchhhhHHhhHHHHhhhc
Q 046157 6 LDLPPECWELIFNSLNDQSHFESLSLVSHRFLSITN 41 (577)
Q Consensus 6 ~~LP~evl~~I~~~L~~~~~~~~~~~vcr~w~~~~~ 41 (577)
.+||+|++..|...|+...|+++.+.|||.||.++.
T Consensus 5 s~Lp~dll~~i~~~l~~~~d~~~~~~vC~sWr~a~~ 40 (373)
T PLN03215 5 STLPEELLHMIAGRLFSNVELKRFRSICRSWRSSVS 40 (373)
T ss_pred hhCCHHHHHHHHhhCCcHHHHHHHHhhhhhHHHhcc
Confidence 579999999999999888999999999999999874
No 67
>PLN03150 hypothetical protein; Provisional
Probab=95.90 E-value=0.021 Score=59.45 Aligned_cols=109 Identities=17% Similarity=0.176 Sum_probs=67.0
Q ss_pred CccEEEcCCCCCCCHHHHHHHHhhCCCccEEecCCCCCCCHHHHHHHHhhCCCCcEEEccccccccccc-ccccCCCceE
Q 046157 395 QVKSLHLARNGNLSDESLKKLAILCPNLEVIDLSHCLGITEEGIGEILKSCCEIKCLEIKRCRAVFDLG-IDLELPKLEV 473 (577)
Q Consensus 395 ~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~-~~~~~~~L~~ 473 (577)
.++.|+++++. +.......+ ..+++|+.|++++| .+... +...+..+++|+.|++++|..-.... ....+++|+.
T Consensus 419 ~v~~L~L~~n~-L~g~ip~~i-~~L~~L~~L~Ls~N-~l~g~-iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~ 494 (623)
T PLN03150 419 FIDGLGLDNQG-LRGFIPNDI-SKLRHLQSINLSGN-SIRGN-IPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRI 494 (623)
T ss_pred EEEEEECCCCC-ccccCCHHH-hCCCCCCEEECCCC-cccCc-CChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCE
Confidence 36778887755 332222223 34688888888887 34322 23346778888888888887433332 3446788888
Q ss_pred EEccCCCCCHHHHHHHHHhCCCccEEecCCCCCC
Q 046157 474 LQASGSALNDHALKMIANTCSRILHLDLDNCLNV 507 (577)
Q Consensus 474 L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~c~~l 507 (577)
|++++|.++......+.....++..+++.+++.+
T Consensus 495 L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~~l 528 (623)
T PLN03150 495 LNLNGNSLSGRVPAALGGRLLHRASFNFTDNAGL 528 (623)
T ss_pred EECcCCcccccCChHHhhccccCceEEecCCccc
Confidence 8888887765443444333345667777766543
No 68
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=95.88 E-value=0.0049 Score=60.74 Aligned_cols=171 Identities=23% Similarity=0.214 Sum_probs=89.8
Q ss_pred CCcCeeecccccccChHHHHHHHhcC-CCCCEEeecCCCCCChHHHHHHHhhCCCCCeEEeeeccCCCCcccccccCCCC
Q 046157 317 QSLEHLNLEAANFLEDESMIDLSKFL-TSLNFIDLGFCAKLTNSTFFTILRECPLLSEIKMETTNLGLDDFTTPLVINPQ 395 (577)
Q Consensus 317 ~~L~~L~l~~~~~~~~~~~~~l~~~~-~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 395 (577)
+.++.|.+.++. +++ +....... ++|+.|++++.. +.. +..-...+++|+.|++..|.+..-. ......+.
T Consensus 116 ~~l~~L~l~~n~-i~~--i~~~~~~~~~nL~~L~l~~N~-i~~--l~~~~~~l~~L~~L~l~~N~l~~l~--~~~~~~~~ 187 (394)
T COG4886 116 TNLTSLDLDNNN-ITD--IPPLIGLLKSNLKELDLSDNK-IES--LPSPLRNLPNLKNLDLSFNDLSDLP--KLLSNLSN 187 (394)
T ss_pred cceeEEecCCcc-ccc--Cccccccchhhcccccccccc-hhh--hhhhhhccccccccccCCchhhhhh--hhhhhhhh
Confidence 456666665554 222 11111123 367888777643 221 1112346778888888777654321 11226677
Q ss_pred ccEEEcCCCCCCCHHHHHHHHhhCCCccEEecCCCCCCCHHHHHHHHhhCCCCcEEEcccccccccccccccCCCceEEE
Q 046157 396 VKSLHLARNGNLSDESLKKLAILCPNLEVIDLSHCLGITEEGIGEILKSCCEIKCLEIKRCRAVFDLGIDLELPKLEVLQ 475 (577)
Q Consensus 396 L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~ 475 (577)
|+.|+++++. +.+. .........|++|.++++..+.. ...+..++++..+.+.++...........++++++|+
T Consensus 188 L~~L~ls~N~-i~~l--~~~~~~~~~L~~l~~~~N~~~~~---~~~~~~~~~l~~l~l~~n~~~~~~~~~~~l~~l~~L~ 261 (394)
T COG4886 188 LNNLDLSGNK-ISDL--PPEIELLSALEELDLSNNSIIEL---LSSLSNLKNLSGLELSNNKLEDLPESIGNLSNLETLD 261 (394)
T ss_pred hhheeccCCc-cccC--chhhhhhhhhhhhhhcCCcceec---chhhhhcccccccccCCceeeeccchhccccccceec
Confidence 7777777765 3331 11112234477777776532221 1224455566666655555222234445666677777
Q ss_pred ccCCCCCHHHHHHHHHhCCCccEEecCCC
Q 046157 476 ASGSALNDHALKMIANTCSRILHLDLDNC 504 (577)
Q Consensus 476 l~~~~i~~~~~~~l~~~~~~L~~L~l~~c 504 (577)
+++|.+++... .....+++.|++++.
T Consensus 262 ~s~n~i~~i~~---~~~~~~l~~L~~s~n 287 (394)
T COG4886 262 LSNNQISSISS---LGSLTNLRELDLSGN 287 (394)
T ss_pred ccccccccccc---ccccCccCEEeccCc
Confidence 77777766443 223567777777764
No 69
>PRK15386 type III secretion protein GogB; Provisional
Probab=95.71 E-value=0.012 Score=56.26 Aligned_cols=138 Identities=17% Similarity=0.211 Sum_probs=83.6
Q ss_pred hhCCCCCeEEeeeccCCCCcccccccCCCCccEEEcCCCCCCCHHHHHHHHhhCCCccEEecCCCCCCCHHHHHHHHhhC
Q 046157 366 RECPLLSEIKMETTNLGLDDFTTPLVINPQVKSLHLARNGNLSDESLKKLAILCPNLEVIDLSHCLGITEEGIGEILKSC 445 (577)
Q Consensus 366 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 445 (577)
..|++++.|++.+|.+..-. .-.++|+.|.+++|..++.. .. ...++|+.|++++|..+.. -.
T Consensus 49 ~~~~~l~~L~Is~c~L~sLP-----~LP~sLtsL~Lsnc~nLtsL--P~--~LP~nLe~L~Ls~Cs~L~s--------LP 111 (426)
T PRK15386 49 EEARASGRLYIKDCDIESLP-----VLPNELTEITIENCNNLTTL--PG--SIPEGLEKLTVCHCPEISG--------LP 111 (426)
T ss_pred HHhcCCCEEEeCCCCCcccC-----CCCCCCcEEEccCCCCcccC--Cc--hhhhhhhheEccCcccccc--------cc
Confidence 45799999999988543321 12346999999998865331 11 1236899999999865431 12
Q ss_pred CCCcEEEcccccccccccccccCCCceEEEccCCC-CCHHHHHHHHHhCCCccEEecCCCCCCChhhHHHHHhhCCCCcE
Q 046157 446 CEIKCLEIKRCRAVFDLGIDLELPKLEVLQASGSA-LNDHALKMIANTCSRILHLDLDNCLNVTTSGVKEVVEHCRTLRE 524 (577)
Q Consensus 446 ~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~-i~~~~~~~l~~~~~~L~~L~l~~c~~l~~~~l~~~~~~~~~L~~ 524 (577)
+.|+.|++..+. ... +..-.++|+.|.+.++. .....+.. ...++|+.|.+.+|..+... . .-..+|+.
T Consensus 112 ~sLe~L~L~~n~-~~~--L~~LPssLk~L~I~~~n~~~~~~lp~--~LPsSLk~L~Is~c~~i~LP--~---~LP~SLk~ 181 (426)
T PRK15386 112 ESVRSLEIKGSA-TDS--IKNVPNGLTSLSINSYNPENQARIDN--LISPSLKTLSLTGCSNIILP--E---KLPESLQS 181 (426)
T ss_pred cccceEEeCCCC-Ccc--cccCcchHhheecccccccccccccc--ccCCcccEEEecCCCcccCc--c---cccccCcE
Confidence 468888876433 111 22344678888886522 11111111 12368999999999865311 0 11257999
Q ss_pred EEecCC
Q 046157 525 INLRWC 530 (577)
Q Consensus 525 L~l~~c 530 (577)
|.++.+
T Consensus 182 L~ls~n 187 (426)
T PRK15386 182 ITLHIE 187 (426)
T ss_pred EEeccc
Confidence 998775
No 70
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=95.67 E-value=0.013 Score=36.22 Aligned_cols=36 Identities=25% Similarity=0.308 Sum_probs=17.4
Q ss_pred CccEEEecCCCCCCcchhHHHHhhhhcCCCEEEcCCCCCC
Q 046157 240 NLVSISVNGIGIPTIDSCFKESFAYARGLCEIDLSNSFIS 279 (577)
Q Consensus 240 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 279 (577)
+|++|++.++.+.. ++..+.++++|+.|+++++.++
T Consensus 2 ~L~~L~l~~N~i~~----l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQITD----LPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-SS----HGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCcc----cCchHhCCCCCCEEEecCCCCC
Confidence 45555555554422 2222455566666666655544
No 71
>KOG2997 consensus F-box protein FBX9 [General function prediction only]
Probab=95.56 E-value=0.011 Score=52.99 Aligned_cols=36 Identities=33% Similarity=0.346 Sum_probs=31.3
Q ss_pred CCCCChHHHHHHHHhc----CCccchhhhHHhhHHHHhhh
Q 046157 5 PLDLPPECWELIFNSL----NDQSHFESLSLVSHRFLSIT 40 (577)
Q Consensus 5 ~~~LP~evl~~I~~~L----~~~~~~~~~~~vcr~w~~~~ 40 (577)
+..|||||+..||+.+ -+.+++.++++|||.|+-.+
T Consensus 107 ~~~LPdEvLm~I~~~vv~~~~d~rsL~~~s~vCr~F~~~~ 146 (366)
T KOG2997|consen 107 ISVLPDEVLMRIFRWVVSSLLDLRSLEQLSLVCRGFYKCA 146 (366)
T ss_pred hhhCCHHHHHHHHHHHHhhhcchhhHHHhHhhHHHHHHHH
Confidence 4679999999999976 15689999999999999877
No 72
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=95.40 E-value=0.0079 Score=59.28 Aligned_cols=177 Identities=19% Similarity=0.231 Sum_probs=113.3
Q ss_pred CCCCcEEEecCCCCCCHHHHHHHHhcC-CCcCeeecccccccChHHHHHHHhcCCCCCEEeecCCCCCChHHHHHHHhhC
Q 046157 290 CLPLKKLVLSHCYNFTLAGISFLLSKY-QSLEHLNLEAANFLEDESMIDLSKFLTSLNFIDLGFCAKLTNSTFFTILREC 368 (577)
Q Consensus 290 ~~~L~~L~l~~~~~~~~~~l~~~~~~~-~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~ 368 (577)
.+.++.+.+.+..... +....... ++|+.|+++++. +... ..-...+++|+.|+++.+. +.+ +.......
T Consensus 115 ~~~l~~L~l~~n~i~~---i~~~~~~~~~nL~~L~l~~N~-i~~l--~~~~~~l~~L~~L~l~~N~-l~~--l~~~~~~~ 185 (394)
T COG4886 115 LTNLTSLDLDNNNITD---IPPLIGLLKSNLKELDLSDNK-IESL--PSPLRNLPNLKNLDLSFND-LSD--LPKLLSNL 185 (394)
T ss_pred ccceeEEecCCccccc---Cccccccchhhcccccccccc-hhhh--hhhhhccccccccccCCch-hhh--hhhhhhhh
Confidence 3678888887754433 22223334 389999999887 3222 1122358999999998865 222 12222267
Q ss_pred CCCCeEEeeeccCCCCcccccccCCCCccEEEcCCCCCCCHHHHHHHHhhCCCccEEecCCCCCCCHHHHHHHHhhCCCC
Q 046157 369 PLLSEIKMETTNLGLDDFTTPLVINPQVKSLHLARNGNLSDESLKKLAILCPNLEVIDLSHCLGITEEGIGEILKSCCEI 448 (577)
Q Consensus 369 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L 448 (577)
++|+.|++++|.+..-. ........|+.+.++++..+.... ......++..+.+.++. +.+ +......++++
T Consensus 186 ~~L~~L~ls~N~i~~l~--~~~~~~~~L~~l~~~~N~~~~~~~---~~~~~~~l~~l~l~~n~-~~~--~~~~~~~l~~l 257 (394)
T COG4886 186 SNLNNLDLSGNKISDLP--PEIELLSALEELDLSNNSIIELLS---SLSNLKNLSGLELSNNK-LED--LPESIGNLSNL 257 (394)
T ss_pred hhhhheeccCCccccCc--hhhhhhhhhhhhhhcCCcceecch---hhhhcccccccccCCce-eee--ccchhcccccc
Confidence 89999999998865432 111344559999998874222211 12345677777766652 222 12446778889
Q ss_pred cEEEcccccccccccccccCCCceEEEccCCCCCHH
Q 046157 449 KCLEIKRCRAVFDLGIDLELPKLEVLQASGSALNDH 484 (577)
Q Consensus 449 ~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~i~~~ 484 (577)
+.|+++++. +.+........+++.|+++++.+.+.
T Consensus 258 ~~L~~s~n~-i~~i~~~~~~~~l~~L~~s~n~~~~~ 292 (394)
T COG4886 258 ETLDLSNNQ-ISSISSLGSLTNLRELDLSGNSLSNA 292 (394)
T ss_pred ceecccccc-ccccccccccCccCEEeccCcccccc
Confidence 999999988 66666667889999999999876643
No 73
>PLN03150 hypothetical protein; Provisional
Probab=95.28 E-value=0.036 Score=57.76 Aligned_cols=108 Identities=18% Similarity=0.076 Sum_probs=63.7
Q ss_pred CCCEEEcCCCCCChHHHHHHHhcCCCCcEEEecCCCCCCHHHHHHHHhcCCCcCeeecccccccChHHHHHHHhcCCCCC
Q 046157 267 GLCEIDLSNSFISDELLRLLGEACLPLKKLVLSHCYNFTLAGISFLLSKYQSLEHLNLEAANFLEDESMIDLSKFLTSLN 346 (577)
Q Consensus 267 ~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~ 346 (577)
.++.|+|+++.+.......+. .+++|+.|+++++.... .+...+..+++|+.|+++++. ++......+. .+++|+
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~-~L~~L~~L~Ls~N~l~g--~iP~~~~~l~~L~~LdLs~N~-lsg~iP~~l~-~L~~L~ 493 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDIS-KLRHLQSINLSGNSIRG--NIPPSLGSITSLEVLDLSYNS-FNGSIPESLG-QLTSLR 493 (623)
T ss_pred EEEEEECCCCCccccCCHHHh-CCCCCCEEECCCCcccC--cCChHHhCCCCCCEEECCCCC-CCCCCchHHh-cCCCCC
Confidence 367788887766544444443 37888888888764321 223335667888888888876 4333223333 478888
Q ss_pred EEeecCCCCCChHHHHHHHhhCCCCCeEEeeecc
Q 046157 347 FIDLGFCAKLTNSTFFTILRECPLLSEIKMETTN 380 (577)
Q Consensus 347 ~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~ 380 (577)
.|+++++. ++...-..+.....++..+++.+|.
T Consensus 494 ~L~Ls~N~-l~g~iP~~l~~~~~~~~~l~~~~N~ 526 (623)
T PLN03150 494 ILNLNGNS-LSGRVPAALGGRLLHRASFNFTDNA 526 (623)
T ss_pred EEECcCCc-ccccCChHHhhccccCceEEecCCc
Confidence 88888754 3222112222233456677777664
No 74
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=95.23 E-value=0.02 Score=29.94 Aligned_cols=22 Identities=32% Similarity=0.536 Sum_probs=13.1
Q ss_pred CCceEEEccCCCCCHHHHHHHH
Q 046157 469 PKLEVLQASGSALNDHALKMIA 490 (577)
Q Consensus 469 ~~L~~L~l~~~~i~~~~~~~l~ 490 (577)
++|++|++++|.++++++..++
T Consensus 2 ~~L~~L~l~~n~i~~~g~~~l~ 23 (24)
T PF13516_consen 2 PNLETLDLSNNQITDEGASALA 23 (24)
T ss_dssp TT-SEEE-TSSBEHHHHHHHHH
T ss_pred CCCCEEEccCCcCCHHHHHHhC
Confidence 5666666666667777766654
No 75
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=94.97 E-value=0.015 Score=52.45 Aligned_cols=38 Identities=21% Similarity=0.212 Sum_probs=34.7
Q ss_pred CCCCCCCC----hHHHHHHHHhcCCccchhhhHHhhHHHHhhh
Q 046157 2 TENPLDLP----PECWELIFNSLNDQSHFESLSLVSHRFLSIT 40 (577)
Q Consensus 2 ~~~~~~LP----~evl~~I~~~L~~~~~~~~~~~vcr~w~~~~ 40 (577)
+|++..|| ++|-+.||+|| +..+++++-+|||+|+++.
T Consensus 72 rDFi~~lP~~gl~hi~e~ilsyl-d~~sLc~celv~k~W~r~l 113 (499)
T KOG0281|consen 72 RDFITALPEQGLDHIAENILSYL-DALSLCACELVCKEWKRVL 113 (499)
T ss_pred HHHHHhcccccHHHHHHHHHHhc-chhhhhHHHHHHHHHHHHh
Confidence 35667899 99999999999 8999999999999999987
No 76
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=94.10 E-value=0.015 Score=57.50 Aligned_cols=59 Identities=22% Similarity=0.161 Sum_probs=31.5
Q ss_pred CCCCCeEEeeeccCCCCcccccccCCCCccEEEcCCCCCCCHHHHHHHHhhCCCccEEecCCCC
Q 046157 368 CPLLSEIKMETTNLGLDDFTTPLVINPQVKSLHLARNGNLSDESLKKLAILCPNLEVIDLSHCL 431 (577)
Q Consensus 368 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~ 431 (577)
++.|+.|++.+|.+.. +..+..++.|+.++++++. +.+..... ...+.+++.+.+.++.
T Consensus 139 l~~L~~L~l~~N~i~~---~~~~~~l~~L~~l~l~~n~-i~~ie~~~-~~~~~~l~~l~l~~n~ 197 (414)
T KOG0531|consen 139 LTLLKELNLSGNLISD---ISGLESLKSLKLLDLSYNR-IVDIENDE-LSELISLEELDLGGNS 197 (414)
T ss_pred ccchhhheeccCcchh---ccCCccchhhhcccCCcch-hhhhhhhh-hhhccchHHHhccCCc
Confidence 3446666666665543 2233336667777777655 32221101 2345677777777653
No 77
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=94.00 E-value=0.021 Score=56.54 Aligned_cols=81 Identities=25% Similarity=0.169 Sum_probs=38.4
Q ss_pred CCCccEEecCCCCCCCHHHHHHHHhhCCCCcEEEcccccccccccccccCCCceEEEccCCCCCHHHHHHHHHhCCCccE
Q 046157 419 CPNLEVIDLSHCLGITEEGIGEILKSCCEIKCLEIKRCRAVFDLGIDLELPKLEVLQASGSALNDHALKMIANTCSRILH 498 (577)
Q Consensus 419 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~ 498 (577)
+++|++|+++++ .++.. . -+..++.|+.|++.+|. +....-...++.|+.+++++|.+.+..... ...+.+++.
T Consensus 117 ~~~L~~L~ls~N-~I~~i--~-~l~~l~~L~~L~l~~N~-i~~~~~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~ 190 (414)
T KOG0531|consen 117 LVNLQVLDLSFN-KITKL--E-GLSTLTLLKELNLSGNL-ISDISGLESLKSLKLLDLSYNRIVDIENDE-LSELISLEE 190 (414)
T ss_pred hhcchheecccc-ccccc--c-chhhccchhhheeccCc-chhccCCccchhhhcccCCcchhhhhhhhh-hhhccchHH
Confidence 455666666554 23221 1 12233445566666555 443333333556666666666555433311 123455666
Q ss_pred EecCCCC
Q 046157 499 LDLDNCL 505 (577)
Q Consensus 499 L~l~~c~ 505 (577)
+++.++.
T Consensus 191 l~l~~n~ 197 (414)
T KOG0531|consen 191 LDLGGNS 197 (414)
T ss_pred HhccCCc
Confidence 6555543
No 78
>PF13013 F-box-like_2: F-box-like domain
Probab=93.16 E-value=0.098 Score=39.60 Aligned_cols=30 Identities=33% Similarity=0.409 Sum_probs=27.0
Q ss_pred CCCCCChHHHHHHHHhcCCccchhhhHHhhH
Q 046157 4 NPLDLPPECWELIFNSLNDQSHFESLSLVSH 34 (577)
Q Consensus 4 ~~~~LP~evl~~I~~~L~~~~~~~~~~~vcr 34 (577)
+..+||.||+..||+|. +..+...+...|+
T Consensus 21 tl~DLP~ELl~~I~~~C-~~~~l~~l~~~~~ 50 (109)
T PF13013_consen 21 TLLDLPWELLQLIFDYC-NDPILLALSRTCR 50 (109)
T ss_pred chhhChHHHHHHHHhhc-CcHHHHHHHHHHH
Confidence 36789999999999999 7889988988888
No 79
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=92.47 E-value=0.23 Score=27.02 Aligned_cols=23 Identities=30% Similarity=0.492 Sum_probs=17.4
Q ss_pred CCceEEEccCCCCCHHHHHHHHH
Q 046157 469 PKLEVLQASGSALNDHALKMIAN 491 (577)
Q Consensus 469 ~~L~~L~l~~~~i~~~~~~~l~~ 491 (577)
++|++|+|++|.+++++...+.+
T Consensus 2 ~~L~~LdL~~N~i~~~G~~~L~~ 24 (28)
T smart00368 2 PSLRELDLSNNKLGDEGARALAE 24 (28)
T ss_pred CccCEEECCCCCCCHHHHHHHHH
Confidence 46777888888888888777765
No 80
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=92.01 E-value=0.0082 Score=46.88 Aligned_cols=65 Identities=17% Similarity=0.216 Sum_probs=37.2
Q ss_pred HHhhCCCccEEecCCCCCCCHHHHHHHHhhCCCCcEEEcccccccccccccccCCCceEEEccCCCCC
Q 046157 415 LAILCPNLEVIDLSHCLGITEEGIGEILKSCCEIKCLEIKRCRAVFDLGIDLELPKLEVLQASGSALN 482 (577)
Q Consensus 415 l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~i~ 482 (577)
+...+|.++.|+++++ .+.+.... +..+|.|+.|+++.++......+...+.+|-.|+..++...
T Consensus 72 ft~kf~t~t~lNl~~n-eisdvPeE--~Aam~aLr~lNl~~N~l~~~p~vi~~L~~l~~Lds~~na~~ 136 (177)
T KOG4579|consen 72 FTIKFPTATTLNLANN-EISDVPEE--LAAMPALRSLNLRFNPLNAEPRVIAPLIKLDMLDSPENARA 136 (177)
T ss_pred Hhhccchhhhhhcchh-hhhhchHH--HhhhHHhhhcccccCccccchHHHHHHHhHHHhcCCCCccc
Confidence 4445677788888775 45543322 56777888888887774443333333444444444444433
No 81
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=91.60 E-value=0.19 Score=26.12 Aligned_cols=23 Identities=48% Similarity=0.583 Sum_probs=17.2
Q ss_pred cCCCcEeeccCCCCCCCCCCcCcccccccccccCHHHHHHHH
Q 046157 142 CEFLEVLDISYPENDSSFLPQGFQNIQSFSFYITDSGIEALS 183 (577)
Q Consensus 142 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~ 183 (577)
+++|++|++++|. +++.++..++
T Consensus 1 ~~~L~~L~l~~n~-------------------i~~~g~~~l~ 23 (24)
T PF13516_consen 1 NPNLETLDLSNNQ-------------------ITDEGASALA 23 (24)
T ss_dssp -TT-SEEE-TSSB-------------------EHHHHHHHHH
T ss_pred CCCCCEEEccCCc-------------------CCHHHHHHhC
Confidence 4789999999998 8888887765
No 82
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=90.56 E-value=0.13 Score=40.48 Aligned_cols=103 Identities=15% Similarity=0.196 Sum_probs=61.7
Q ss_pred CccEEecCCCCCCCHHHHHHHHhhCCCCcEEEccccccccccc--ccccCCCceEEEccCCCCCHHHHHHHHHhCCCccE
Q 046157 421 NLEVIDLSHCLGITEEGIGEILKSCCEIKCLEIKRCRAVFDLG--IDLELPKLEVLQASGSALNDHALKMIANTCSRILH 498 (577)
Q Consensus 421 ~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~--~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~ 498 (577)
.+..++++.|.-.--......+..-..|+.++++++. +.+.+ +...+|.+++|++++|.+.+...+ ++ .++.|+.
T Consensus 28 E~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~-fk~fp~kft~kf~t~t~lNl~~neisdvPeE-~A-am~aLr~ 104 (177)
T KOG4579|consen 28 ELHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNG-FKKFPKKFTIKFPTATTLNLANNEISDVPEE-LA-AMPALRS 104 (177)
T ss_pred HhhhcccccchhhHHHHHHHHHhCCceEEEEecccch-hhhCCHHHhhccchhhhhhcchhhhhhchHH-Hh-hhHHhhh
Confidence 4556777777422122223334555677778888876 44443 455778888888888888876665 33 3688999
Q ss_pred EecCCCCCCChhhHHHHHhhCCCCcEEEecC
Q 046157 499 LDLDNCLNVTTSGVKEVVEHCRTLREINLRW 529 (577)
Q Consensus 499 L~l~~c~~l~~~~l~~~~~~~~~L~~L~l~~ 529 (577)
|+++.++ +... ..++..+.++-.|+.-+
T Consensus 105 lNl~~N~-l~~~--p~vi~~L~~l~~Lds~~ 132 (177)
T KOG4579|consen 105 LNLRFNP-LNAE--PRVIAPLIKLDMLDSPE 132 (177)
T ss_pred cccccCc-cccc--hHHHHHHHhHHHhcCCC
Confidence 9998876 3321 22223344455554433
No 83
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=89.81 E-value=0.61 Score=45.90 Aligned_cols=88 Identities=18% Similarity=0.217 Sum_probs=51.2
Q ss_pred HHHHhhCCCccEEecCCCCCCCHHHHHHHHhhCCCCcEEEccccccccccc---ccccCCCceEEEccCCCCCH------
Q 046157 413 KKLAILCPNLEVIDLSHCLGITEEGIGEILKSCCEIKCLEIKRCRAVFDLG---IDLELPKLEVLQASGSALND------ 483 (577)
Q Consensus 413 ~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~---~~~~~~~L~~L~l~~~~i~~------ 483 (577)
..+....|.+..+.++++.-..-+.+..+....|+|+.|+|+++...-... .......|++|-+.||.+..
T Consensus 211 ~~~~~n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~l~Leel~l~GNPlc~tf~~~s 290 (585)
T KOG3763|consen 211 KHIEENFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLKGLPLEELVLEGNPLCTTFSDRS 290 (585)
T ss_pred HHhhcCCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhhcCCCHHHeeecCCccccchhhhH
Confidence 444455666777777666544445566666667777777777663211111 12345666777777765543
Q ss_pred HHHHHHHHhCCCccEEe
Q 046157 484 HALKMIANTCSRILHLD 500 (577)
Q Consensus 484 ~~~~~l~~~~~~L~~L~ 500 (577)
+-+.++.+.+|+|..||
T Consensus 291 ~yv~~i~~~FPKL~~LD 307 (585)
T KOG3763|consen 291 EYVSAIRELFPKLLRLD 307 (585)
T ss_pred HHHHHHHHhcchheeec
Confidence 34455666777777664
No 84
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=88.41 E-value=0.91 Score=44.74 Aligned_cols=97 Identities=24% Similarity=0.212 Sum_probs=59.8
Q ss_pred HHHHHhhcCCCccEEeccCCCCcChhhHHHHHHcCCCCCeeecCCCcccc--chhHHHHHhhcCCCcEeeccCCCCCCCC
Q 046157 82 ILYLISRSGLDLESLNISNLKSFPFMGLKELGTKMKNLKELNCSKNFSFR--DSDLIAVAETCEFLEVLDISYPENDSSF 159 (577)
Q Consensus 82 ~l~~~~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~--~~~l~~~~~~~~~L~~L~l~~~~~~~~~ 159 (577)
.+..+....+.+.+++++++....-+.+..+....|+|+.|+|++..... ...+..+ ....|++|-+.+|++-..
T Consensus 209 ~L~~~~~n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~--k~l~Leel~l~GNPlc~t- 285 (585)
T KOG3763|consen 209 VLKHIEENFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKL--KGLPLEELVLEGNPLCTT- 285 (585)
T ss_pred HHHHhhcCCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhh--cCCCHHHeeecCCccccc-
Confidence 34455556778888888877766677777788888888888888762221 2222222 345678888888872111
Q ss_pred CCcCcccccccccccCHHHHHHHHHcCccCcEEe
Q 046157 160 LPQGFQNIQSFSFYITDSGIEALSMKLKRLKRIN 193 (577)
Q Consensus 160 ~~~~~~~~~~~~~~l~~~~~~~l~~~~~~L~~L~ 193 (577)
|.-..+.+..+.+.+|+|..||
T Consensus 286 ------------f~~~s~yv~~i~~~FPKL~~LD 307 (585)
T KOG3763|consen 286 ------------FSDRSEYVSAIRELFPKLLRLD 307 (585)
T ss_pred ------------hhhhHHHHHHHHHhcchheeec
Confidence 1112333555666677777774
No 85
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=85.69 E-value=1.3 Score=24.04 Aligned_cols=25 Identities=36% Similarity=0.450 Sum_probs=21.1
Q ss_pred CCCcEeeccCCCCCCCCCCcCcccccccccccCHHHHHHHHHcC
Q 046157 143 EFLEVLDISYPENDSSFLPQGFQNIQSFSFYITDSGIEALSMKL 186 (577)
Q Consensus 143 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~ 186 (577)
++|++|+|++|. +.+++...+++.+
T Consensus 2 ~~L~~LdL~~N~-------------------i~~~G~~~L~~~L 26 (28)
T smart00368 2 PSLRELDLSNNK-------------------LGDEGARALAEAL 26 (28)
T ss_pred CccCEEECCCCC-------------------CCHHHHHHHHHHh
Confidence 579999999999 8999988887643
No 86
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=85.40 E-value=0.48 Score=22.21 Aligned_cols=9 Identities=44% Similarity=0.575 Sum_probs=3.3
Q ss_pred ccEEecCCC
Q 046157 496 ILHLDLDNC 504 (577)
Q Consensus 496 L~~L~l~~c 504 (577)
|+.|++++|
T Consensus 3 L~~L~l~~n 11 (17)
T PF13504_consen 3 LRTLDLSNN 11 (17)
T ss_dssp -SEEEETSS
T ss_pred cCEEECCCC
Confidence 344444443
No 87
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=84.38 E-value=0.32 Score=49.22 Aligned_cols=38 Identities=18% Similarity=0.163 Sum_probs=34.6
Q ss_pred CCCCCCChHHHHHHHHhcCCccchhhhHHhhHHHHhhhc
Q 046157 3 ENPLDLPPECWELIFNSLNDQSHFESLSLVSHRFLSITN 41 (577)
Q Consensus 3 ~~~~~LP~evl~~I~~~L~~~~~~~~~~~vcr~w~~~~~ 41 (577)
+.+..||.|+..+|+.|| +.+++..+++||+.|+.++.
T Consensus 106 dfi~~lp~el~~~il~~L-d~~~l~~~~~v~~~w~~~~~ 143 (537)
T KOG0274|consen 106 DFLSLLPSELSLHILSFL-DGRDLLAVRQVCRNWNKLLD 143 (537)
T ss_pred chhhcccchhcccccccC-CHHHhhhhhhhcchhhhhhh
Confidence 566789999999999999 79999999999999999873
No 88
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=81.97 E-value=0.26 Score=48.57 Aligned_cols=104 Identities=16% Similarity=0.197 Sum_probs=52.4
Q ss_pred CCCeEEeeeccCCCCcccccccCCCCccEEEcCCCCCCCHHHHHHHHhhCCCccEEecCCCCCCCHHHHHHHHhhCCCCc
Q 046157 370 LLSEIKMETTNLGLDDFTTPLVINPQVKSLHLARNGNLSDESLKKLAILCPNLEVIDLSHCLGITEEGIGEILKSCCEIK 449 (577)
Q Consensus 370 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~ 449 (577)
-|+.|-+++|.+... +..+...++|..|+.+.|...+ +..-...+.+|+.|.+..+. +.+. ...+ . +=.|.
T Consensus 144 pLkvli~sNNkl~~l--p~~ig~~~tl~~ld~s~nei~s---lpsql~~l~slr~l~vrRn~-l~~l-p~El-~-~LpLi 214 (722)
T KOG0532|consen 144 PLKVLIVSNNKLTSL--PEEIGLLPTLAHLDVSKNEIQS---LPSQLGYLTSLRDLNVRRNH-LEDL-PEEL-C-SLPLI 214 (722)
T ss_pred cceeEEEecCccccC--CcccccchhHHHhhhhhhhhhh---chHHhhhHHHHHHHHHhhhh-hhhC-CHHH-h-CCcee
Confidence 467777777765443 3333466677777776654111 11112234456666665542 1110 1111 1 22466
Q ss_pred EEEcccccccccccccc-cCCCceEEEccCCCCCH
Q 046157 450 CLEIKRCRAVFDLGIDL-ELPKLEVLQASGSALND 483 (577)
Q Consensus 450 ~L~l~~~~~l~~~~~~~-~~~~L~~L~l~~~~i~~ 483 (577)
+|+++.|+ +..+.+.+ .+.+|++|.|.+|-+..
T Consensus 215 ~lDfScNk-is~iPv~fr~m~~Lq~l~LenNPLqS 248 (722)
T KOG0532|consen 215 RLDFSCNK-ISYLPVDFRKMRHLQVLQLENNPLQS 248 (722)
T ss_pred eeecccCc-eeecchhhhhhhhheeeeeccCCCCC
Confidence 66666555 55444432 56666666666665543
No 89
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=76.43 E-value=0.57 Score=46.31 Aligned_cols=34 Identities=12% Similarity=0.147 Sum_probs=19.2
Q ss_pred CCCeEEeeeccCCCCcccccccCCCCccEEEcCCCC
Q 046157 370 LLSEIKMETTNLGLDDFTTPLVINPQVKSLHLARNG 405 (577)
Q Consensus 370 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 405 (577)
.|.+|+++.|.+..- +..|.++..|+.|.|.+|+
T Consensus 212 pLi~lDfScNkis~i--Pv~fr~m~~Lq~l~LenNP 245 (722)
T KOG0532|consen 212 PLIRLDFSCNKISYL--PVDFRKMRHLQVLQLENNP 245 (722)
T ss_pred ceeeeecccCceeec--chhhhhhhhheeeeeccCC
Confidence 455666666554332 4455566666666666655
No 90
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=66.73 E-value=1.9 Score=34.24 Aligned_cols=11 Identities=9% Similarity=0.537 Sum_probs=4.0
Q ss_pred hhCCCCcEEEc
Q 046157 443 KSCCEIKCLEI 453 (577)
Q Consensus 443 ~~~~~L~~L~l 453 (577)
.++++|+.+.+
T Consensus 55 ~~~~~l~~i~~ 65 (129)
T PF13306_consen 55 SNCKSLESITF 65 (129)
T ss_dssp TT-TT-EEEEE
T ss_pred ecccccccccc
Confidence 33444444444
No 91
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=64.44 E-value=3.5 Score=20.78 Aligned_cols=9 Identities=33% Similarity=0.357 Sum_probs=4.7
Q ss_pred ccEEecCCC
Q 046157 496 ILHLDLDNC 504 (577)
Q Consensus 496 L~~L~l~~c 504 (577)
|++|++++|
T Consensus 2 L~~Ldls~n 10 (22)
T PF00560_consen 2 LEYLDLSGN 10 (22)
T ss_dssp ESEEEETSS
T ss_pred ccEEECCCC
Confidence 455555554
No 92
>PF07723 LRR_2: Leucine Rich Repeat; InterPro: IPR013101 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This entry includes some LRRs that fail to be detected by IPR001611 from INTERPRO [, ].
Probab=62.39 E-value=7 Score=20.78 Aligned_cols=25 Identities=20% Similarity=0.368 Sum_probs=10.5
Q ss_pred CCEEeecCCCCCChHHHHHHHhhCC
Q 046157 345 LNFIDLGFCAKLTNSTFFTILRECP 369 (577)
Q Consensus 345 L~~L~l~~~~~~~~~~l~~l~~~~~ 369 (577)
|++|.+....-..+..+..+++.||
T Consensus 2 LKtL~L~~v~f~~~~~l~~LlS~CP 26 (26)
T PF07723_consen 2 LKTLHLDSVVFSDEDSLERLLSGCP 26 (26)
T ss_pred CeEEEeeEEEECChhHHHHhhccCc
Confidence 4445444433222334444444443
No 93
>KOG3926 consensus F-box proteins [Amino acid transport and metabolism]
Probab=59.14 E-value=13 Score=33.11 Aligned_cols=37 Identities=30% Similarity=0.400 Sum_probs=32.0
Q ss_pred CCCCCChHHHHHHHHhcCCccchhhhHHhhHHHHhhh
Q 046157 4 NPLDLPPECWELIFNSLNDQSHFESLSLVSHRFLSIT 40 (577)
Q Consensus 4 ~~~~LP~evl~~I~~~L~~~~~~~~~~~vcr~w~~~~ 40 (577)
++.+||.|++..|+..+++-+|+..++.|-.....++
T Consensus 201 tl~dLP~e~vl~Il~rlsDh~dL~s~aqa~etl~~l~ 237 (332)
T KOG3926|consen 201 TLHDLPLECVLNILLRLSDHRDLESLAQAWETLAKLS 237 (332)
T ss_pred CcccchHHHHHHHHHHccCcchHHHHHHhhHHHHHHH
Confidence 4678999999999999999999999999876665554
No 94
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=58.39 E-value=8 Score=20.29 Aligned_cols=14 Identities=36% Similarity=0.544 Sum_probs=6.9
Q ss_pred CCceEEEccCCCCC
Q 046157 469 PKLEVLQASGSALN 482 (577)
Q Consensus 469 ~~L~~L~l~~~~i~ 482 (577)
++|+.|++++|.+.
T Consensus 2 ~~L~~L~L~~N~l~ 15 (26)
T smart00370 2 PNLRELDLSNNQLS 15 (26)
T ss_pred CCCCEEECCCCcCC
Confidence 34555555555443
No 95
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=58.39 E-value=8 Score=20.29 Aligned_cols=14 Identities=36% Similarity=0.544 Sum_probs=6.9
Q ss_pred CCceEEEccCCCCC
Q 046157 469 PKLEVLQASGSALN 482 (577)
Q Consensus 469 ~~L~~L~l~~~~i~ 482 (577)
++|+.|++++|.+.
T Consensus 2 ~~L~~L~L~~N~l~ 15 (26)
T smart00369 2 PNLRELDLSNNQLS 15 (26)
T ss_pred CCCCEEECCCCcCC
Confidence 34555555555443
No 96
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=54.80 E-value=54 Score=32.33 Aligned_cols=229 Identities=15% Similarity=0.063 Sum_probs=100.2
Q ss_pred cCHHHHHHHHHcC--ccCcEEeccCCcccChh-HHHHHHhcCCCCcEEEeccCCCCCHHHHHHHHhc-CCCccEEEecCC
Q 046157 174 ITDSGIEALSMKL--KRLKRINLSGNFFITDK-SLMFLSSNLVLLREILIRDCDFITQSGISFAMRN-SPNLVSISVNGI 249 (577)
Q Consensus 174 l~~~~~~~l~~~~--~~L~~L~l~~~~~~~~~-~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~-~~~L~~L~l~~~ 249 (577)
.++..+..+...- ..+.+++++.+..-++. ........-..++.++.++...-.+..+..+... ..++...++..+
T Consensus 199 lsskfis~l~~qsg~~~lteldls~n~~Kddip~~~n~~a~~~vl~~ld~s~tgirlD~l~~~l~~g~~tkl~~~kls~n 278 (553)
T KOG4242|consen 199 LSSKFISKLLIQSGRLWLTELDLSTNGGKDDIPRTLNKKAGTLVLFKLDRSTTGIRLDLLTSPLAAGRTTKLTFGKLSRN 278 (553)
T ss_pred hhhhHHHHhhhhhccccccccccccCCCCccchhHHHHhhhhhhhhcccccccccchhhcccccccccccccchhhhccC
Confidence 4555555554221 24778888875433221 1111222223455666555333233333233222 245666665555
Q ss_pred CC-----CCcchhHHHHhhhhcCCCEEEcCCCCCChHHHHHHHhcCC-----CCcEEEecCCCCCCHHHHHHHHhcCCCc
Q 046157 250 GI-----PTIDSCFKESFAYARGLCEIDLSNSFISDELLRLLGEACL-----PLKKLVLSHCYNFTLAGISFLLSKYQSL 319 (577)
Q Consensus 250 ~~-----~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~-----~L~~L~l~~~~~~~~~~l~~~~~~~~~L 319 (577)
+. .......-+.+..-+++ +|++..+...++.+..+.-... .=-++++..|.......... ...-..+
T Consensus 279 g~s~skg~Egg~~~k~~fS~~~sg-hln~~~~~~psE~lks~LLgla~ne~t~g~rldl~~cp~~~a~vlea-ci~g~R~ 356 (553)
T KOG4242|consen 279 GTSPSKGEEGGGAEKDTFSPDPSG-HLNSRPRYTPSEKLKSMLLGLAENEATLGARLDLRRCPLERAEVLEA-CIFGQRV 356 (553)
T ss_pred CCCcccccccccccccccCcCccc-ccccccccCchhhhhhhhcccccccccccccCChhhccccccchhhc-cccceee
Confidence 43 12333344445555677 7888777777666665543211 11233344443332222221 1122356
Q ss_pred CeeecccccccChHHHHHH-HhcCCCCCEEeecCCCC--CCh-----HHHHHHHhhCCCCCeEEeeeccCCCC--ccccc
Q 046157 320 EHLNLEAANFLEDESMIDL-SKFLTSLNFIDLGFCAK--LTN-----STFFTILRECPLLSEIKMETTNLGLD--DFTTP 389 (577)
Q Consensus 320 ~~L~l~~~~~~~~~~~~~l-~~~~~~L~~L~l~~~~~--~~~-----~~l~~l~~~~~~L~~L~l~~~~~~~~--~~~~~ 389 (577)
+.|.+..+. ...+.-... ....+..+.+.+..-.. +.. ......-+..--+..+.++.+..... ..+..
T Consensus 357 q~l~~rdnn-ldgeg~~vgk~~~s~s~r~l~agrs~~kqvm~s~~~a~~v~k~~~~~g~l~el~ls~~~lka~l~s~in~ 435 (553)
T KOG4242|consen 357 QVLLQRDNN-LDGEGGAVGKRKQSKSGRILKAGRSGDKQVMDSSTEAPPVSKKSRTHGVLAELSLSPGPLKAGLESAINK 435 (553)
T ss_pred eEeeccccc-cccccccccceeeccccccccccccCCceeccccccchhhhhhhcccccccCcccCCCcccccHHHHHHh
Confidence 777776654 222111111 01134555555543221 111 11111112233455555555543332 23344
Q ss_pred ccCCCCccEEEcCCCC
Q 046157 390 LVINPQVKSLHLARNG 405 (577)
Q Consensus 390 ~~~~~~L~~L~l~~~~ 405 (577)
....+.+.+|+++++.
T Consensus 436 l~stqtl~kldisgn~ 451 (553)
T KOG4242|consen 436 LLSTQTLAKLDISGNG 451 (553)
T ss_pred hccCcccccccccCCC
Confidence 4556667777777654
No 97
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=42.07 E-value=23 Score=18.84 Aligned_cols=13 Identities=31% Similarity=0.381 Sum_probs=7.1
Q ss_pred CCceEEEccCCCC
Q 046157 469 PKLEVLQASGSAL 481 (577)
Q Consensus 469 ~~L~~L~l~~~~i 481 (577)
.+|+.|+++.|.|
T Consensus 2 ~~L~~L~L~~NkI 14 (26)
T smart00365 2 TNLEELDLSQNKI 14 (26)
T ss_pred CccCEEECCCCcc
Confidence 3455555555555
No 98
>PF03382 DUF285: Mycoplasma protein of unknown function, DUF285; InterPro: IPR005046 This is a family proteins of unknown function. Many contain a tandem peptide repeat sequence of 25 or 26 residues, found in predicted surface proteins (often lipoproteins) from Listeria monocytogenes, Listeria innocua, Enterococcus faecalis (Streptococcus faecalis), Lactobacillus plantarum, Mycoplasma mycoides, Helicobacter hepaticus, and other species.
Probab=40.63 E-value=19 Score=28.23 Aligned_cols=56 Identities=25% Similarity=0.359 Sum_probs=23.7
Q ss_pred HHhCCCccEEecCC--CCCCChhhHHHHHhhCCCCcEEEecCCCCCcHHHHHHHHHhCCCCc
Q 046157 490 ANTCSRILHLDLDN--CLNVTTSGVKEVVEHCRTLREINLRWCDEVNVDIVAWMVFSRPSLR 549 (577)
Q Consensus 490 ~~~~~~L~~L~l~~--c~~l~~~~l~~~~~~~~~L~~L~l~~c~~~~~~~~~~~~~~~~~L~ 549 (577)
...++.|.. +++. ..+++. ...++.+|++| ..+++.-.--....+..++..|+.|+
T Consensus 57 F~~~~~l~~-dls~w~~s~v~~--~~~mF~~~~~l-~~~l~~wn~~~v~~~~~mF~~~~~l~ 114 (120)
T PF03382_consen 57 FAGCSSLNQ-DLSNWDTSNVTN--MSNMFSGCSSL-NQDLSNWNTSSVTNMSSMFANCSNLN 114 (120)
T ss_pred HhhhhhcCC-Cccccccccccc--HHHHHhhhHHc-CCchhhccccccccHHHHHhChHhcc
Confidence 334455555 4432 222332 34555566666 34343221111123445555555543
No 99
>KOG3735 consensus Tropomodulin and leiomodulin [Cytoskeleton]
Probab=36.82 E-value=89 Score=29.35 Aligned_cols=85 Identities=15% Similarity=0.153 Sum_probs=44.2
Q ss_pred HHHHHHhcCCCCcEEEeccCCCCCHHHHHHHH---hcCCCccEEEecCCCC-CCcchhHHHHhhhhcCCCEEEcCCCCCC
Q 046157 204 SLMFLSSNLVLLREILIRDCDFITQSGISFAM---RNSPNLVSISVNGIGI-PTIDSCFKESFAYARGLCEIDLSNSFIS 279 (577)
Q Consensus 204 ~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~---~~~~~L~~L~l~~~~~-~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 279 (577)
.+..+-..-+.++..++++...++..-+..+. ......+...+.+... ......+...+.-++.|++|+++++.++
T Consensus 189 ~leri~~nd~~l~evnlnn~~~ip~e~lk~~~eal~~nt~vk~Fsla~tr~~d~vA~a~a~ml~~n~sl~slnvesnFIt 268 (353)
T KOG3735|consen 189 SLERIKENDTGLTEVNLNNIRRIPIETLKQFSEALKNNTHVKKFSLANTRSSDPVAFAIAEMLKENKSLTSLNVESNFIT 268 (353)
T ss_pred HHHHHhcCCCCceeeeccccccCCHHHHHHHHHHHhcCchhhhhhhhcccCCchhHHHHHHHHhhcchhhheeccccccc
Confidence 33444444566666666665555544333322 2233444444444333 2233344445556677777777777777
Q ss_pred hHHHHHHHh
Q 046157 280 DELLRLLGE 288 (577)
Q Consensus 280 ~~~l~~l~~ 288 (577)
...+.++..
T Consensus 269 g~gi~a~~~ 277 (353)
T KOG3735|consen 269 GLGIMALLR 277 (353)
T ss_pred cHHHHHHHH
Confidence 666655544
No 100
>KOG2502 consensus Tub family proteins [General function prediction only]
Probab=34.18 E-value=29 Score=32.44 Aligned_cols=34 Identities=21% Similarity=0.309 Sum_probs=28.8
Q ss_pred CCChHHHHHHHHhcC-------CccchhhhHHhhHHHHhhh
Q 046157 7 DLPPECWELIFNSLN-------DQSHFESLSLVSHRFLSIT 40 (577)
Q Consensus 7 ~LP~evl~~I~~~L~-------~~~~~~~~~~vcr~w~~~~ 40 (577)
+||+|.+..|..... ..+..++++-||+.|++.+
T Consensus 47 ~l~~~~L~d~~~r~eese~~wp~r~~vvs~~~~~~~~r~~~ 87 (355)
T KOG2502|consen 47 ALPPELLSDVLKRDEESEDTWPSRRNVVSCAGVCDKWREIS 87 (355)
T ss_pred cCCHhHHHHHhhhccccccccccccccccccchhhhhhhhc
Confidence 699999999999982 2456778899999999976
No 101
>PF03382 DUF285: Mycoplasma protein of unknown function, DUF285; InterPro: IPR005046 This is a family proteins of unknown function. Many contain a tandem peptide repeat sequence of 25 or 26 residues, found in predicted surface proteins (often lipoproteins) from Listeria monocytogenes, Listeria innocua, Enterococcus faecalis (Streptococcus faecalis), Lactobacillus plantarum, Mycoplasma mycoides, Helicobacter hepaticus, and other species.
Probab=33.57 E-value=35 Score=26.73 Aligned_cols=7 Identities=14% Similarity=0.173 Sum_probs=2.8
Q ss_pred cCccCcE
Q 046157 185 KLKRLKR 191 (577)
Q Consensus 185 ~~~~L~~ 191 (577)
+++.|..
T Consensus 59 ~~~~l~~ 65 (120)
T PF03382_consen 59 GCSSLNQ 65 (120)
T ss_pred hhhhcCC
Confidence 3444444
No 102
>KOG3735 consensus Tropomodulin and leiomodulin [Cytoskeleton]
Probab=23.88 E-value=2.2e+02 Score=26.86 Aligned_cols=99 Identities=22% Similarity=0.282 Sum_probs=66.9
Q ss_pred CchhHHHHHhhcCCCccEEeccCCCCcChhhHHHHHHcC---CCCCeeecCCCc--cccchhHHHHHhhcCCCcEeeccC
Q 046157 78 DPNSILYLISRSGLDLESLNISNLKSFPFMGLKELGTKM---KNLKELNCSKNF--SFRDSDLIAVAETCEFLEVLDISY 152 (577)
Q Consensus 78 ~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~---~~L~~L~l~~~~--~~~~~~l~~~~~~~~~L~~L~l~~ 152 (577)
+.+..+..+....+.++..++.+...++...+..+...+ .+.+...+.+.. ..-...+..+...++.|++|++.+
T Consensus 185 ~~e~~leri~~nd~~l~evnlnn~~~ip~e~lk~~~eal~~nt~vk~Fsla~tr~~d~vA~a~a~ml~~n~sl~slnves 264 (353)
T KOG3735|consen 185 DVESSLERIKENDTGLTEVNLNNIRRIPIETLKQFSEALKNNTHVKKFSLANTRSSDPVAFAIAEMLKENKSLTSLNVES 264 (353)
T ss_pred hHHHHHHHHhcCCCCceeeeccccccCCHHHHHHHHHHHhcCchhhhhhhhcccCCchhHHHHHHHHhhcchhhheeccc
Confidence 345667778778889999999988888887776665554 345555554331 111234455667789999999999
Q ss_pred CCCCCCCCCcCcccccccccccCHHHHHHHHHcC---ccCcEEecc
Q 046157 153 PENDSSFLPQGFQNIQSFSFYITDSGIEALSMKL---KRLKRINLS 195 (577)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~---~~L~~L~l~ 195 (577)
+- |+..++-.+...+ .+|..+.+.
T Consensus 265 nF-------------------Itg~gi~a~~~al~~n~tl~el~~d 291 (353)
T KOG3735|consen 265 NF-------------------ITGLGIMALLRALQSNKSLTELKND 291 (353)
T ss_pred cc-------------------cccHHHHHHHHHHhccchhhHhhhh
Confidence 98 8888877766544 345555444
No 103
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=20.42 E-value=61 Score=17.35 Aligned_cols=13 Identities=31% Similarity=0.411 Sum_probs=6.5
Q ss_pred CceEEEccCCCCC
Q 046157 470 KLEVLQASGSALN 482 (577)
Q Consensus 470 ~L~~L~l~~~~i~ 482 (577)
+|+.|.+++|.++
T Consensus 3 ~L~~L~vs~N~Lt 15 (26)
T smart00364 3 SLKELNVSNNQLT 15 (26)
T ss_pred ccceeecCCCccc
Confidence 4555555555443
Done!