Query 046157
Match_columns 577
No_of_seqs 337 out of 3102
Neff 11.3
Searched_HMMs 29240
Date Mon Mar 25 16:05:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046157.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/046157hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2p1m_B Transport inhibitor res 100.0 3.7E-45 1.3E-49 380.0 38.7 496 3-555 4-540 (594)
2 3ogk_B Coronatine-insensitive 100.0 1.1E-44 3.9E-49 376.0 34.1 497 5-554 13-546 (592)
3 3ogk_B Coronatine-insensitive 100.0 7.3E-33 2.5E-37 287.3 33.0 405 133-567 102-533 (592)
4 2p1m_B Transport inhibitor res 100.0 5.5E-32 1.9E-36 281.0 36.3 447 68-567 46-526 (594)
5 1z7x_W Ribonuclease inhibitor; 100.0 5.6E-28 1.9E-32 242.5 38.9 410 91-551 3-460 (461)
6 1z7x_W Ribonuclease inhibitor; 100.0 1.9E-27 6.7E-32 238.6 36.4 387 142-556 2-437 (461)
7 2ast_B S-phase kinase-associat 99.9 6.1E-26 2.1E-30 217.5 22.2 298 4-382 8-306 (336)
8 3rgz_A Protein brassinosteroid 99.9 1.5E-26 5.1E-31 245.6 -5.7 252 290-557 293-549 (768)
9 3t6q_A CD180 antigen; protein- 99.9 7.9E-26 2.7E-30 234.9 -2.7 278 262-556 274-557 (606)
10 3rgz_A Protein brassinosteroid 99.9 8.2E-26 2.8E-30 239.9 -6.2 420 90-557 99-525 (768)
11 3vq2_A TLR4, TOLL-like recepto 99.9 4.1E-24 1.4E-28 222.0 4.4 271 262-556 281-555 (606)
12 3t6q_A CD180 antigen; protein- 99.9 3.3E-24 1.1E-28 222.7 2.9 450 58-534 50-561 (606)
13 4fmz_A Internalin; leucine ric 99.9 2.9E-21 1E-25 185.7 23.2 302 185-530 42-343 (347)
14 2z81_A CD282 antigen, TOLL-lik 99.9 4.1E-23 1.4E-27 211.9 9.7 462 65-557 26-508 (549)
15 1o6v_A Internalin A; bacterial 99.9 1.5E-21 5.3E-26 195.1 20.8 339 92-530 47-385 (466)
16 1o6v_A Internalin A; bacterial 99.9 1.5E-21 5.2E-26 195.2 19.8 341 142-556 45-385 (466)
17 4fmz_A Internalin; leucine ric 99.9 4.4E-21 1.5E-25 184.5 22.1 303 211-557 42-344 (347)
18 3vq2_A TLR4, TOLL-like recepto 99.9 8.3E-24 2.8E-28 219.7 1.4 276 235-535 281-560 (606)
19 2z7x_B TOLL-like receptor 1, v 99.9 1.7E-22 5.9E-27 205.6 8.2 127 65-224 21-149 (520)
20 2z81_A CD282 antigen, TOLL-lik 99.9 8.2E-22 2.8E-26 202.2 13.1 423 90-563 25-489 (549)
21 1ziw_A TOLL-like receptor 3; i 99.9 6.2E-23 2.1E-27 216.1 2.1 138 419-561 404-550 (680)
22 2z7x_B TOLL-like receptor 1, v 99.8 5E-21 1.7E-25 194.8 12.4 416 90-557 20-479 (520)
23 2z63_A TOLL-like receptor 4, v 99.8 5.7E-23 1.9E-27 212.0 -2.4 133 65-224 28-160 (570)
24 1ziw_A TOLL-like receptor 3; i 99.8 2.3E-22 8E-27 211.7 1.3 280 262-555 325-618 (680)
25 2z63_A TOLL-like receptor 4, v 99.8 1.4E-22 4.8E-27 209.1 -5.5 417 90-556 27-528 (570)
26 2ast_B S-phase kinase-associat 99.8 5.4E-19 1.8E-23 169.1 18.5 283 174-523 12-299 (336)
27 3j0a_A TOLL-like receptor 5; m 99.8 2.1E-23 7.3E-28 223.7 -16.2 60 420-481 401-463 (844)
28 2ca6_A RAN GTPase-activating p 99.8 1.1E-17 3.8E-22 162.9 23.4 95 259-354 25-133 (386)
29 3a79_B TLR6, VLRB.59, TOLL-lik 99.8 2.5E-19 8.6E-24 183.7 12.0 172 369-555 331-506 (562)
30 3j0a_A TOLL-like receptor 5; m 99.8 1.3E-21 4.6E-26 209.8 -5.7 393 64-504 23-436 (844)
31 4eco_A Uncharacterized protein 99.8 1.3E-21 4.3E-26 202.8 -5.9 344 185-557 204-598 (636)
32 2ca6_A RAN GTPase-activating p 99.8 1.4E-17 4.7E-22 162.3 22.5 273 276-554 14-338 (386)
33 4ecn_A Leucine-rich repeat pro 99.8 1.8E-20 6.1E-25 197.4 2.0 133 237-382 489-632 (876)
34 4eco_A Uncharacterized protein 99.8 6.2E-21 2.1E-25 197.6 -1.8 326 209-557 202-577 (636)
35 4ecn_A Leucine-rich repeat pro 99.8 2.5E-20 8.4E-25 196.3 2.7 343 113-505 444-838 (876)
36 3a79_B TLR6, VLRB.59, TOLL-lik 99.8 1.1E-19 3.7E-24 186.5 4.9 420 66-538 32-515 (562)
37 3v47_A TOLL-like receptor 5B a 99.8 1.1E-19 3.8E-24 181.7 4.2 353 143-533 30-408 (455)
38 3v47_A TOLL-like receptor 5B a 99.8 2.7E-19 9.4E-24 178.8 5.5 355 187-557 30-406 (455)
39 3o6n_A APL1; leucine-rich repe 99.8 7.5E-19 2.6E-23 171.6 8.3 271 185-491 91-361 (390)
40 3bz5_A Internalin-J, INLJ; leu 99.7 9.7E-18 3.3E-22 166.0 14.5 152 315-504 189-349 (457)
41 3o6n_A APL1; leucine-rich repe 99.7 2E-18 6.7E-23 168.6 8.6 324 185-549 43-367 (390)
42 3bz5_A Internalin-J, INLJ; leu 99.7 8.7E-18 3E-22 166.3 11.6 303 141-530 40-349 (457)
43 3oja_B Anopheles plasmodium-re 99.7 8.7E-18 3E-22 173.1 9.2 271 185-491 97-367 (597)
44 2id5_A Lingo-1, leucine rich r 99.7 2E-18 6.8E-23 173.5 3.3 302 187-535 32-335 (477)
45 3oja_B Anopheles plasmodium-re 99.7 1.1E-17 3.8E-22 172.3 7.8 320 186-546 50-370 (597)
46 2id5_A Lingo-1, leucine rich r 99.7 5E-18 1.7E-22 170.6 -0.3 300 143-482 32-333 (477)
47 3goz_A Leucine-rich repeat-con 99.7 1.7E-15 5.8E-20 145.9 16.2 37 420-457 225-264 (362)
48 1jl5_A Outer protein YOPM; leu 99.6 2.2E-16 7.6E-21 156.1 8.5 240 187-482 131-370 (454)
49 1jl5_A Outer protein YOPM; leu 99.6 4E-17 1.4E-21 161.4 2.8 50 447-504 318-367 (454)
50 3goz_A Leucine-rich repeat-con 99.6 6.1E-15 2.1E-19 141.9 17.9 256 271-531 3-295 (362)
51 4g8a_A TOLL-like receptor 4; l 99.6 2.7E-17 9.3E-22 172.1 -0.7 137 390-533 441-580 (635)
52 3o53_A Protein LRIM1, AGAP0063 99.6 9.8E-17 3.3E-21 151.4 1.2 128 419-554 143-270 (317)
53 1xku_A Decorin; proteoglycan, 99.6 1.3E-15 4.3E-20 145.0 6.6 108 367-483 169-277 (330)
54 2z80_A TOLL-like receptor 2, v 99.6 3.5E-15 1.2E-19 143.3 7.3 162 367-535 147-316 (353)
55 3o53_A Protein LRIM1, AGAP0063 99.5 1.2E-15 3.9E-20 144.1 3.4 251 253-530 21-272 (317)
56 1xku_A Decorin; proteoglycan, 99.5 5E-16 1.7E-20 147.8 0.7 224 314-555 97-328 (330)
57 2ft3_A Biglycan; proteoglycan, 99.5 2.9E-16 9.9E-21 149.5 -4.1 62 213-279 54-115 (332)
58 2ft3_A Biglycan; proteoglycan, 99.5 3.2E-16 1.1E-20 149.2 -3.9 80 214-302 34-113 (332)
59 4g8a_A TOLL-like receptor 4; l 99.5 1.2E-15 4.2E-20 159.5 -0.8 136 367-507 443-580 (635)
60 1wwl_A Monocyte differentiatio 99.5 8.6E-14 2.9E-18 130.9 11.4 204 315-531 93-307 (312)
61 3oja_A Leucine-rich immune mol 99.5 2.7E-15 9.2E-20 149.9 0.4 57 239-301 34-90 (487)
62 3g06_A SSPH2 (leucine-rich rep 99.5 1.9E-13 6.5E-18 139.3 13.2 243 187-489 61-304 (622)
63 3g06_A SSPH2 (leucine-rich rep 99.5 5.5E-14 1.9E-18 143.3 8.5 238 213-509 61-298 (622)
64 2z66_A Variable lymphocyte rec 99.5 6.4E-16 2.2E-20 145.4 -6.0 87 443-533 172-261 (306)
65 3e4g_A ATP synthase subunit S, 99.5 9.9E-14 3.4E-18 114.5 7.5 106 420-550 61-171 (176)
66 2z80_A TOLL-like receptor 2, v 99.4 8.6E-14 2.9E-18 133.6 7.6 186 314-507 121-314 (353)
67 4fcg_A Uncharacterized protein 99.4 4.4E-15 1.5E-19 140.5 -1.7 222 290-555 80-310 (328)
68 1ogq_A PGIP-2, polygalacturona 99.4 9.9E-16 3.4E-20 144.1 -7.6 35 239-274 50-84 (313)
69 4glp_A Monocyte differentiatio 99.4 2.6E-13 9E-18 127.5 8.8 154 367-531 143-305 (310)
70 1ogq_A PGIP-2, polygalacturona 99.4 3.3E-15 1.1E-19 140.5 -4.5 87 187-278 50-137 (313)
71 3oja_A Leucine-rich immune mol 99.4 2.2E-14 7.5E-19 143.3 0.9 171 369-553 99-269 (487)
72 3zyi_A Leucine-rich repeat-con 99.4 4.8E-14 1.6E-18 140.2 3.1 228 290-533 74-303 (452)
73 4fcg_A Uncharacterized protein 99.4 2.6E-14 9E-19 135.1 1.2 58 444-502 251-309 (328)
74 1h6u_A Internalin H; cell adhe 99.4 9.6E-13 3.3E-17 123.3 11.5 146 367-531 83-228 (308)
75 3zyj_A Leucine-rich repeat-con 99.4 4.6E-14 1.6E-18 139.8 2.6 229 290-534 63-293 (440)
76 2z66_A Variable lymphocyte rec 99.4 6.3E-14 2.1E-18 131.7 1.7 136 315-457 99-234 (306)
77 1wwl_A Monocyte differentiatio 99.4 2.2E-14 7.4E-19 135.0 -2.6 133 315-457 171-307 (312)
78 3zyi_A Leucine-rich repeat-con 99.4 9.9E-14 3.4E-18 137.9 1.7 156 315-481 145-302 (452)
79 1h6u_A Internalin H; cell adhe 99.4 3E-12 1E-16 119.9 11.6 144 238-404 40-183 (308)
80 1ozn_A Reticulon 4 receptor; N 99.4 4.5E-13 1.5E-17 124.4 6.0 159 367-534 78-239 (285)
81 3zyj_A Leucine-rich repeat-con 99.4 1.4E-13 4.7E-18 136.4 2.3 156 315-481 134-291 (440)
82 3un9_A NLR family member X1; l 99.3 2.8E-11 9.6E-16 115.8 16.6 171 368-543 71-261 (372)
83 3un9_A NLR family member X1; l 99.3 7E-12 2.4E-16 120.0 11.8 171 342-517 71-261 (372)
84 3e4g_A ATP synthase subunit S, 99.3 9.4E-13 3.2E-17 108.7 5.0 93 469-563 61-156 (176)
85 1ozn_A Reticulon 4 receptor; N 99.3 2.6E-13 8.7E-18 126.1 0.9 38 443-481 198-237 (285)
86 4glp_A Monocyte differentiatio 99.3 3.9E-13 1.3E-17 126.3 1.6 158 342-510 144-309 (310)
87 4ezg_A Putative uncharacterize 99.2 2.8E-11 9.5E-16 105.2 10.0 151 316-481 43-193 (197)
88 2z62_A TOLL-like receptor 4, v 99.2 1.8E-12 6.1E-17 119.7 1.0 108 291-405 28-135 (276)
89 1h6t_A Internalin B; cell adhe 99.2 4.1E-11 1.4E-15 111.1 9.7 80 443-530 131-210 (291)
90 4ezg_A Putative uncharacterize 99.2 4.7E-11 1.6E-15 103.7 8.1 131 342-483 43-173 (197)
91 1h6t_A Internalin B; cell adhe 99.2 5.6E-11 1.9E-15 110.2 8.2 166 368-556 45-210 (291)
92 3rfs_A Internalin B, repeat mo 99.2 1.6E-11 5.4E-16 112.9 4.4 85 443-531 130-216 (272)
93 2z62_A TOLL-like receptor 4, v 99.1 8.3E-12 2.8E-16 115.2 1.9 132 266-404 28-159 (276)
94 2o6q_A Variable lymphocyte rec 99.1 8.8E-11 3E-15 107.8 7.4 157 367-532 59-217 (270)
95 2ra8_A Uncharacterized protein 99.1 9E-10 3.1E-14 104.3 13.4 185 341-555 137-339 (362)
96 1m9s_A Internalin B; cell inva 99.1 1.2E-10 4.1E-15 118.6 7.8 168 342-532 42-209 (605)
97 1m9s_A Internalin B; cell inva 99.1 3.4E-10 1.2E-14 115.3 10.4 145 342-505 64-208 (605)
98 2ra8_A Uncharacterized protein 99.0 1.9E-09 6.6E-14 102.0 13.9 188 313-531 135-341 (362)
99 2o6q_A Variable lymphocyte rec 99.0 6.5E-11 2.2E-15 108.6 3.6 177 369-556 37-215 (270)
100 3rfs_A Internalin B, repeat mo 99.0 2E-10 7E-15 105.4 6.6 132 367-505 83-216 (272)
101 2xwt_C Thyrotropin receptor; s 99.0 2E-11 6.8E-16 109.9 -0.2 10 292-301 32-41 (239)
102 2xwt_C Thyrotropin receptor; s 99.0 2E-11 6.8E-16 109.9 -1.1 106 444-557 125-237 (239)
103 2je0_A Acidic leucine-rich nuc 99.0 4.3E-10 1.5E-14 92.7 6.5 132 419-554 16-148 (149)
104 2je0_A Acidic leucine-rich nuc 99.0 7.7E-10 2.6E-14 91.2 7.7 83 369-457 17-99 (149)
105 1p9a_G Platelet glycoprotein I 99.0 2.2E-10 7.5E-15 106.0 4.5 201 314-534 7-209 (290)
106 1p9a_G Platelet glycoprotein I 99.0 1.1E-10 3.7E-15 108.1 2.3 110 367-482 98-208 (290)
107 1xeu_A Internalin C; cellular 98.9 5.9E-10 2E-14 101.5 5.8 143 342-504 40-182 (263)
108 3m19_A Variable lymphocyte rec 98.9 5.6E-10 1.9E-14 101.1 4.1 85 443-531 104-190 (251)
109 2ell_A Acidic leucine-rich nuc 98.9 1.1E-09 3.8E-14 92.3 4.7 130 369-505 24-158 (168)
110 2ell_A Acidic leucine-rich nuc 98.9 9.1E-10 3.1E-14 92.9 3.4 132 343-482 24-160 (168)
111 1xeu_A Internalin C; cellular 98.8 9.8E-09 3.4E-13 93.4 9.1 103 367-482 83-185 (263)
112 1io0_A Tropomodulin; LRR prote 98.8 9.3E-08 3.2E-12 81.5 14.6 61 469-530 93-161 (185)
113 3m19_A Variable lymphocyte rec 98.8 4.1E-09 1.4E-13 95.4 5.1 132 367-505 57-190 (251)
114 1io0_A Tropomodulin; LRR prote 98.8 1.9E-07 6.7E-12 79.5 14.6 129 411-562 27-166 (185)
115 1fs1_A SKP2 F-BOX, cyclin A/CD 98.7 5.7E-09 1.9E-13 67.7 3.6 38 3-41 7-44 (53)
116 3cvr_A Invasion plasmid antige 98.7 1.6E-08 5.5E-13 101.8 7.3 81 445-531 159-241 (571)
117 4ay9_X Follicle-stimulating ho 98.7 9.1E-10 3.1E-14 105.1 -2.9 227 239-479 30-256 (350)
118 3cvr_A Invasion plasmid antige 98.6 5.1E-08 1.7E-12 98.2 8.9 190 239-490 59-251 (571)
119 1a9n_A U2A', U2A'; complex (nu 98.6 2.7E-08 9.3E-13 84.4 5.5 85 390-482 15-101 (176)
120 1a9n_A U2A', U2A'; complex (nu 98.6 1.3E-08 4.5E-13 86.3 3.5 81 368-457 18-99 (176)
121 3sb4_A Hypothetical leucine ri 98.6 2.8E-08 9.6E-13 93.9 4.5 254 186-456 24-307 (329)
122 4ay9_X Follicle-stimulating ho 98.6 1.8E-09 6.3E-14 103.0 -3.8 152 367-529 102-255 (350)
123 2xot_A Amphoterin-induced prot 98.6 2.5E-08 8.6E-13 95.5 3.7 38 367-405 62-99 (361)
124 1ds9_A Outer arm dynein; leuci 98.6 1.6E-08 5.5E-13 87.7 2.0 129 417-554 45-182 (198)
125 1dce_A Protein (RAB geranylger 98.5 1.6E-08 5.6E-13 102.3 1.6 104 390-501 459-567 (567)
126 2v9t_B SLIT homolog 2 protein 98.5 4.9E-08 1.7E-12 86.1 3.8 34 370-404 33-66 (220)
127 2v70_A SLIT-2, SLIT homolog 2 98.5 3.5E-08 1.2E-12 87.0 2.7 86 443-532 78-165 (220)
128 3e6j_A Variable lymphocyte rec 98.5 6.3E-08 2.2E-12 86.0 4.2 37 493-531 134-170 (229)
129 2xot_A Amphoterin-induced prot 98.5 4.3E-08 1.5E-12 93.9 3.0 108 317-430 39-146 (361)
130 2o6s_A Variable lymphocyte rec 98.5 7.6E-08 2.6E-12 84.2 4.3 14 444-457 98-111 (208)
131 2v70_A SLIT-2, SLIT homolog 2 98.5 7.5E-08 2.6E-12 84.9 4.1 83 419-505 80-164 (220)
132 1ds9_A Outer arm dynein; leuci 98.5 6.7E-09 2.3E-13 90.1 -3.1 128 365-526 44-180 (198)
133 3sb4_A Hypothetical leucine ri 98.4 7.2E-08 2.5E-12 91.1 3.5 264 264-552 23-327 (329)
134 3e6j_A Variable lymphocyte rec 98.4 3.4E-07 1.2E-11 81.2 7.2 38 367-405 62-99 (229)
135 2v9t_B SLIT homolog 2 protein 98.4 2.3E-07 7.8E-12 81.8 4.6 109 367-481 54-164 (220)
136 2o6s_A Variable lymphocyte rec 98.4 6.5E-07 2.2E-11 78.2 7.1 109 367-481 50-160 (208)
137 1pgv_A TMD-1, tropomodulin TMD 98.3 2.6E-05 8.7E-10 65.7 14.1 119 411-530 32-167 (197)
138 1dce_A Protein (RAB geranylger 98.1 3.3E-06 1.1E-10 85.5 6.5 103 418-526 461-566 (567)
139 1w8a_A SLIT protein; signaling 98.1 1.6E-06 5.5E-11 74.4 3.2 39 443-482 75-115 (192)
140 1pgv_A TMD-1, tropomodulin TMD 98.0 0.00011 3.8E-09 61.8 13.3 121 435-556 30-167 (197)
141 2o6r_A Variable lymphocyte rec 97.9 9.4E-06 3.2E-10 68.6 5.6 107 369-481 28-136 (177)
142 2wfh_A SLIT homolog 2 protein 97.9 7.1E-06 2.4E-10 70.3 4.7 12 493-504 125-136 (193)
143 1w8a_A SLIT protein; signaling 97.9 7.4E-06 2.5E-10 70.3 4.6 108 370-482 30-139 (192)
144 2wfh_A SLIT homolog 2 protein 97.9 5.7E-06 1.9E-10 71.0 3.8 89 442-534 50-140 (193)
145 4b8c_D Glucose-repressible alc 97.9 6.1E-06 2.1E-10 86.4 4.1 110 366-484 221-331 (727)
146 2o6r_A Variable lymphocyte rec 97.8 7.1E-06 2.4E-10 69.4 2.6 86 444-533 50-137 (177)
147 3l2o_B F-box only protein 4; s 97.8 1.1E-05 3.7E-10 71.3 2.9 35 6-41 6-40 (312)
148 4b8c_D Glucose-repressible alc 97.7 4.7E-06 1.6E-10 87.2 0.5 111 388-508 218-329 (727)
149 2e31_A FBS1, F-box only protei 97.7 1.4E-05 4.8E-10 71.6 2.9 37 4-41 50-87 (297)
150 3rw6_A Nuclear RNA export fact 97.5 0.00039 1.4E-08 62.0 9.3 41 416-457 166-207 (267)
151 3rw6_A Nuclear RNA export fact 97.3 0.00062 2.1E-08 60.8 8.4 64 340-405 167-231 (267)
152 4fs7_A Uncharacterized protein 97.3 4.3E-05 1.5E-09 74.0 0.1 53 492-551 341-393 (394)
153 3g39_A Variable lymphocyte rec 97.2 0.00023 8E-09 59.3 4.4 38 443-481 75-114 (170)
154 2r9u_A Variable lymphocyte rec 97.2 0.00033 1.1E-08 58.6 4.7 14 444-457 79-92 (174)
155 3v7d_B Cell division control p 97.1 8.1E-05 2.8E-09 73.9 0.2 39 3-42 13-51 (464)
156 3g39_A Variable lymphocyte rec 97.0 0.00031 1.1E-08 58.6 3.2 84 369-457 30-113 (170)
157 4fs7_A Uncharacterized protein 97.0 9.7E-05 3.3E-09 71.5 -0.2 56 418-478 318-375 (394)
158 2r9u_A Variable lymphocyte rec 97.0 0.00043 1.5E-08 58.0 3.5 84 369-457 33-116 (174)
159 2ovr_B FBW7, F-BOX/WD repeat p 96.9 0.00031 1.1E-08 69.2 2.7 39 2-41 16-54 (445)
160 1p22_A F-BOX/WD-repeat protein 96.9 0.00017 5.7E-09 71.0 0.3 38 3-41 9-50 (435)
161 4fdw_A Leucine rich hypothetic 96.6 0.0026 8.7E-08 61.3 6.2 15 262-276 176-190 (401)
162 4fdw_A Leucine rich hypothetic 96.5 0.00056 1.9E-08 65.8 0.9 106 442-555 267-379 (401)
163 4gt6_A Cell surface protein; l 96.0 0.0013 4.3E-08 63.6 0.5 121 418-555 263-387 (394)
164 2ifg_A High affinity nerve gro 96.0 0.0059 2E-07 57.7 4.8 88 390-482 27-116 (347)
165 2ifg_A High affinity nerve gro 95.0 0.014 4.8E-07 55.1 3.8 84 418-505 29-114 (347)
166 4gt6_A Cell surface protein; l 79.9 1.2 4.2E-05 42.4 3.8 12 492-503 355-366 (394)
167 4h09_A Hypothetical leucine ri 78.3 0.63 2.2E-05 44.2 1.2 12 517-528 330-341 (379)
168 3rfe_A Platelet glycoprotein I 67.6 4.9 0.00017 31.0 3.7 35 370-405 32-66 (130)
169 4h09_A Hypothetical leucine ri 60.1 4 0.00014 38.5 2.4 11 492-502 331-341 (379)
170 3rfe_A Platelet glycoprotein I 54.6 12 0.00042 28.6 3.9 10 421-430 32-41 (130)
No 1
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=100.00 E-value=3.7e-45 Score=379.96 Aligned_cols=496 Identities=18% Similarity=0.231 Sum_probs=359.5
Q ss_pred CCCCCCChHHHHHHHHhcCCccchhhhHHhhHHHHhhhccccccccccCCCCCchHHHHhhcccCceecccCcc------
Q 046157 3 ENPLDLPPECWELIFNSLNDQSHFESLSLVSHRFLSITNYLRNSLKLTDPSTPFLPQLFNRFQNLKKIDLSEFQ------ 76 (577)
Q Consensus 3 ~~~~~LP~evl~~I~~~L~~~~~~~~~~~vcr~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~------ 76 (577)
+...+||+|||.+||+||+..+|+.++++|||+|+++....+..+.+...........+.+|+++++++++++.
T Consensus 4 d~~~~LPdevL~~If~~L~~~~d~~~~s~vck~W~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~ 83 (594)
T 2p1m_B 4 RIALSFPEEVLEHVFSFIQLDKDRNSVSLVCKSWYEIERWCRRKVFIGNCYAVSPATVIRRFPKVRSVELKGKPHFADFN 83 (594)
T ss_dssp ------CHHHHHHHHHTCCCHHHHHHHHTSCHHHHHHHHHHCCEEEESSTTSSCHHHHHHHCTTCCEEEEECSCGGGGGT
T ss_pred cchhhCCHHHHHHHHhhcCCchhHHHHHHHHHHHHHhhhhhceEEeeccccccCHHHHHhhCCCceEEeccCCCchhhcc
Confidence 66788999999999999954999999999999999997666666665543333446788899999999998753
Q ss_pred -------CCchhHHHHHhhcCCCccEEeccCCCCcChhhHHHHHHcCCCCCeeecCCCccccchhHHHHHhhcCCCcEee
Q 046157 77 -------GDPNSILYLISRSGLDLESLNISNLKSFPFMGLKELGTKMKNLKELNCSKNFSFRDSDLIAVAETCEFLEVLD 149 (577)
Q Consensus 77 -------~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~ 149 (577)
....+++..+...+++|++|+++++. +++..+..+...+++|++|++.+|..++...+..+...+++|++|+
T Consensus 84 l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~-~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~ 162 (594)
T 2p1m_B 84 LVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMV-VTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELD 162 (594)
T ss_dssp CSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCB-CCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEE
T ss_pred cccccccchhhHHHHHHHHhCCCCCeEEeeCcE-EcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEe
Confidence 12234566777778899999999875 7777777777778999999999887777777888888899999999
Q ss_pred ccCCCCCCCCCCcCcccccccccccCHH---HHHHHHHcCccCcEEeccCCc-ccChhHHHHHHhcCCCCcEEEeccCCC
Q 046157 150 ISYPENDSSFLPQGFQNIQSFSFYITDS---GIEALSMKLKRLKRINLSGNF-FITDKSLMFLSSNLVLLREILIRDCDF 225 (577)
Q Consensus 150 l~~~~~~~~~~~~~~~~~~~~~~~l~~~---~~~~l~~~~~~L~~L~l~~~~-~~~~~~~~~l~~~~~~L~~L~l~~~~~ 225 (577)
+++|. +++. .+..+...+++|++|+++++. .+++..+..+...+++|++|++.+|..
T Consensus 163 L~~~~-------------------i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~ 223 (594)
T 2p1m_B 163 LRESD-------------------VDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVP 223 (594)
T ss_dssp CTTCE-------------------EECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSC
T ss_pred CcCCc-------------------cCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCc
Confidence 99887 3322 233334467789999998764 566777777777789999999988743
Q ss_pred CCHHHHHHHHhcCCCccEEEecCCCCCC---cchhHHHHhhhhcCCCEE-EcCCCCCChHHHHHHHhcCCCCcEEEecCC
Q 046157 226 ITQSGISFAMRNSPNLVSISVNGIGIPT---IDSCFKESFAYARGLCEI-DLSNSFISDELLRLLGEACLPLKKLVLSHC 301 (577)
Q Consensus 226 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~---~~~~~~~~~~~~~~L~~L-~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~ 301 (577)
..++...+..+++|++|.+..+.... ........+.++++|+.+ .+.. .....+..+...+++|++|++++|
T Consensus 224 --~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~--~~~~~l~~~~~~~~~L~~L~L~~~ 299 (594)
T 2p1m_B 224 --LEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWD--AVPAYLPAVYSVCSRLTTLNLSYA 299 (594)
T ss_dssp --HHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBT--CCGGGGGGGHHHHTTCCEEECTTC
T ss_pred --HHHHHHHHhcCCcceEcccccccCccchhhHHHHHHHHhcCCCcccccCCcc--cchhhHHHHHHhhCCCCEEEccCC
Confidence 33466777888899999877654211 112334456677888877 3332 223333444445778888888877
Q ss_pred CCCCHHHHHHHHhcCCCcCeeecccccccChHHHHHHHhcCCCCCEEee--------cCCCCCChHHHHHHHhhCCCCCe
Q 046157 302 YNFTLAGISFLLSKYQSLEHLNLEAANFLEDESMIDLSKFLTSLNFIDL--------GFCAKLTNSTFFTILRECPLLSE 373 (577)
Q Consensus 302 ~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l--------~~~~~~~~~~l~~l~~~~~~L~~ 373 (577)
. +.+.++..+...+++|++|++.++ +++..+..+...+++|+.|++ ..+..+++.++..+...|++|+.
T Consensus 300 ~-l~~~~l~~~~~~~~~L~~L~l~~~--~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~ 376 (594)
T 2p1m_B 300 T-VQSYDLVKLLCQCPKLQRLWVLDY--IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLES 376 (594)
T ss_dssp C-CCHHHHHHHHTTCTTCCEEEEEGG--GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCE
T ss_pred C-CCHHHHHHHHhcCCCcCEEeCcCc--cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHH
Confidence 6 666666666677788888888776 456666666666788888887 34456777777777666777777
Q ss_pred EEeeeccCCCCcccccccCCCCccEEEcCCCCCCCHHHHHHHHhhCCCccEEecC-----CCCCCC----HHHHHHHHhh
Q 046157 374 IKMETTNLGLDDFTTPLVINPQVKSLHLARNGNLSDESLKKLAILCPNLEVIDLS-----HCLGIT----EEGIGEILKS 444 (577)
Q Consensus 374 L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~-----~~~~~~----~~~~~~~~~~ 444 (577)
|.+..+ .+++..+..++..+++|+.|+++ +|..++ +.++..++..
T Consensus 377 L~~~~~--------------------------~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~ 430 (594)
T 2p1m_B 377 VLYFCR--------------------------QMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEH 430 (594)
T ss_dssp EEEEES--------------------------CCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHH
T ss_pred HHHhcC--------------------------CcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhh
Confidence 655443 35566666666667777777777 455666 5666666777
Q ss_pred CCCCcEEEcccccccccccc---cccCCCceEEEccCCCCCHHHHHHHHHhCCCccEEecCCCCCCChhhHHHHHhhCCC
Q 046157 445 CCEIKCLEIKRCRAVFDLGI---DLELPKLEVLQASGSALNDHALKMIANTCSRILHLDLDNCLNVTTSGVKEVVEHCRT 521 (577)
Q Consensus 445 ~~~L~~L~l~~~~~l~~~~~---~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~c~~l~~~~l~~~~~~~~~ 521 (577)
+++|+.|++++ .+++.++ ...+++|+.|++++|.+++.++..+...+++|+.|++++|+ +++.++..+...+++
T Consensus 431 ~~~L~~L~L~~--~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~-~~~~~~~~~~~~l~~ 507 (594)
T 2p1m_B 431 CKDLRRLSLSG--LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCP-FGDKALLANASKLET 507 (594)
T ss_dssp CTTCCEEECCS--SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCS-CCHHHHHHTGGGGGG
T ss_pred CCCccEEeecC--cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCC-CcHHHHHHHHHhCCC
Confidence 77777777755 3444332 22467788888888889999998887889999999999997 588888888888999
Q ss_pred CcEEEecCCCCCcHHHHHHHHHhCCCCceeccCC
Q 046157 522 LREINLRWCDEVNVDIVAWMVFSRPSLRKIIPPC 555 (577)
Q Consensus 522 L~~L~l~~c~~~~~~~~~~~~~~~~~L~~l~~~~ 555 (577)
|+.|++++|+. +++++..+...+|.|+...+..
T Consensus 508 L~~L~l~~~~~-~~~~~~~l~~~lp~l~i~~~~~ 540 (594)
T 2p1m_B 508 MRSLWMSSCSV-SFGACKLLGQKMPKLNVEVIDE 540 (594)
T ss_dssp SSEEEEESSCC-BHHHHHHHHHHCTTEEEEEECS
T ss_pred CCEEeeeCCCC-CHHHHHHHHHhCCCCEEEEecC
Confidence 99999999976 8888888889999998776654
No 2
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=100.00 E-value=1.1e-44 Score=376.04 Aligned_cols=497 Identities=18% Similarity=0.239 Sum_probs=363.5
Q ss_pred CCCCChHHHHHHHHhcCCccchhhhHHhhHHHHhhhccccccccccCCCCCchHHHHhhcccCceecccCcc--------
Q 046157 5 PLDLPPECWELIFNSLNDQSHFESLSLVSHRFLSITNYLRNSLKLTDPSTPFLPQLFNRFQNLKKIDLSEFQ-------- 76 (577)
Q Consensus 5 ~~~LP~evl~~I~~~L~~~~~~~~~~~vcr~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~-------- 76 (577)
..+||+|||.+||+||++.+|+.++++|||+|+.+..+.+..+.+........+.++.+++++++|+++++.
T Consensus 13 ~~~LPdeil~~I~~~L~~~~d~~~~s~vck~W~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~ 92 (592)
T 3ogk_B 13 CVATVDDVIEQVMTYITDPKDRDSASLVCRRWFKIDSETREHVTMALCYTATPDRLSRRFPNLRSLKLKGKPRAAMFNLI 92 (592)
T ss_dssp CCCCGGGTHHHHHTTCCCHHHHHHHTTSCHHHHHHHHHHCCEEEESCGGGSCHHHHHHHCTTCSEEEEECSCGGGGGTCS
T ss_pred cCCCCHHHHHHHHHhcCCHHHHHHHHHHhHHHHHhhhccccEEEEeeccccChHHHHHhCCCCeEEEecCCcchhhcccc
Confidence 357999999999999955999999999999999998666666665443333557889999999999997632
Q ss_pred -----CCchhHHHHHhhcCCCccEEeccCCCCcChhhHHHHHHcCCC-CCeeecCCCccccchhHHHHHhhcCCCcEeec
Q 046157 77 -----GDPNSILYLISRSGLDLESLNISNLKSFPFMGLKELGTKMKN-LKELNCSKNFSFRDSDLIAVAETCEFLEVLDI 150 (577)
Q Consensus 77 -----~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~-L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l 150 (577)
....+++..+...+++|++|+++++ .+++..+..+...+++ |++|++++|..+....+..+...|++|++|++
T Consensus 93 ~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~-~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L 171 (592)
T 3ogk_B 93 PENWGGYVTPWVTEISNNLRQLKSVHFRRM-IVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLM 171 (592)
T ss_dssp CTTSCCBCHHHHHHHHHHCTTCCEEEEESC-BCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEEC
T ss_pred cccccccchHHHHHHHhhCCCCCeEEeecc-EecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEEC
Confidence 2334567777778899999999987 4777777777776776 99999999877777788888889999999999
Q ss_pred cCCCCCCCCCCcCcccccccccccCHHHHHHHHHcCccCcEEeccCCcc--cChhHHHHHHhcCCCCcEEEeccCCCCCH
Q 046157 151 SYPENDSSFLPQGFQNIQSFSFYITDSGIEALSMKLKRLKRINLSGNFF--ITDKSLMFLSSNLVLLREILIRDCDFITQ 228 (577)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~--~~~~~~~~l~~~~~~L~~L~l~~~~~~~~ 228 (577)
++|.+. .....++..+...+++|++|+++++.. ++...+..+...+++|++|++.+|...
T Consensus 172 ~~~~~~----------------~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~-- 233 (592)
T 3ogk_B 172 EESSFS----------------EKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEIL-- 233 (592)
T ss_dssp TTCEEE----------------CCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGG--
T ss_pred cccccc----------------CcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHH--
Confidence 998711 012233666777889999999987532 346777788888999999999986432
Q ss_pred HHHHHHHhcCCCccEEEecCCCCCCcchhHHHHhhhhcCCCEEEcCCCCCChHHHHHHHhcCCCCcEEEecCCCCCCHHH
Q 046157 229 SGISFAMRNSPNLVSISVNGIGIPTIDSCFKESFAYARGLCEIDLSNSFISDELLRLLGEACLPLKKLVLSHCYNFTLAG 308 (577)
Q Consensus 229 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~ 308 (577)
++...+..+++|++|++...............+..+++|+.+++.+.. ...+..+...+++|++|++++|. +.+.+
T Consensus 234 -~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~--~~~l~~~~~~~~~L~~L~Ls~~~-l~~~~ 309 (592)
T 3ogk_B 234 -ELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMG--PNEMPILFPFAAQIRKLDLLYAL-LETED 309 (592)
T ss_dssp -GGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCC--TTTGGGGGGGGGGCCEEEETTCC-CCHHH
T ss_pred -HHHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccc--hhHHHHHHhhcCCCcEEecCCCc-CCHHH
Confidence 244667788999999998643221112233445667788888887642 22334445557888888888877 66667
Q ss_pred HHHHHhcCCCcCeeecccccccChHHHHHHHhcCCCCCEEeecC----------CCCCChHHHHHHHhhCCCCCeEEeee
Q 046157 309 ISFLLSKYQSLEHLNLEAANFLEDESMIDLSKFLTSLNFIDLGF----------CAKLTNSTFFTILRECPLLSEIKMET 378 (577)
Q Consensus 309 l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~----------~~~~~~~~l~~l~~~~~~L~~L~l~~ 378 (577)
+..++..+++|++|++.+ .+.+..+..+...+++|++|++.+ |..+++.++..+...|++|++|++..
T Consensus 310 ~~~~~~~~~~L~~L~L~~--~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~ 387 (592)
T 3ogk_B 310 HCTLIQKCPNLEVLETRN--VIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYV 387 (592)
T ss_dssp HHHHHTTCTTCCEEEEEG--GGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEE
T ss_pred HHHHHHhCcCCCEEeccC--ccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeec
Confidence 766677888888888883 256777777777788888888885 77788888877777788777777744
Q ss_pred ccCCCCcccccccCCCCccEEEcCCCCCCCHHHHHHHHhhCCCccEEecCC---CCCCCH----HHHHHHHhhCCCCcEE
Q 046157 379 TNLGLDDFTTPLVINPQVKSLHLARNGNLSDESLKKLAILCPNLEVIDLSH---CLGITE----EGIGEILKSCCEIKCL 451 (577)
Q Consensus 379 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~---~~~~~~----~~~~~~~~~~~~L~~L 451 (577)
+ .+++..+..++..+++|+.|++++ |..+++ .++..++.++++|+.|
T Consensus 388 ~--------------------------~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L 441 (592)
T 3ogk_B 388 S--------------------------DITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRF 441 (592)
T ss_dssp S--------------------------CCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEE
T ss_pred C--------------------------CccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEE
Confidence 3 355666666666677777777752 335554 3566667777777777
Q ss_pred Ecccccc-ccccc---ccccCCCceEEEccCCCCCHHHHHHHHHhCCCccEEecCCCCCCChhhHHHHHhhCCCCcEEEe
Q 046157 452 EIKRCRA-VFDLG---IDLELPKLEVLQASGSALNDHALKMIANTCSRILHLDLDNCLNVTTSGVKEVVEHCRTLREINL 527 (577)
Q Consensus 452 ~l~~~~~-l~~~~---~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~c~~l~~~~l~~~~~~~~~L~~L~l 527 (577)
++++|.. +++.. +...+++|+.|++++|.+++.++..+...+++|++|++++|+ +++.++..+...+++|++|++
T Consensus 442 ~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~l 520 (592)
T 3ogk_B 442 AFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCC-FSERAIAAAVTKLPSLRYLWV 520 (592)
T ss_dssp EEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCC-CBHHHHHHHHHHCSSCCEEEE
T ss_pred EEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCC-CcHHHHHHHHHhcCccCeeEC
Confidence 7766553 33322 223467777777777778887777777778888888888886 777777777777888888888
Q ss_pred cCCCCCcHHHHHHHHHhCCCCceeccC
Q 046157 528 RWCDEVNVDIVAWMVFSRPSLRKIIPP 554 (577)
Q Consensus 528 ~~c~~~~~~~~~~~~~~~~~L~~l~~~ 554 (577)
++|. +++.++..+...+|.++...+.
T Consensus 521 s~n~-it~~~~~~l~~~~p~l~~~~~~ 546 (592)
T 3ogk_B 521 QGYR-ASMTGQDLMQMARPYWNIELIP 546 (592)
T ss_dssp ESCB-CCTTCTTGGGGCCTTEEEEEEC
T ss_pred cCCc-CCHHHHHHHHHhCCCcEEEEec
Confidence 8886 7766677777777877666554
No 3
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=100.00 E-value=7.3e-33 Score=287.29 Aligned_cols=405 Identities=17% Similarity=0.190 Sum_probs=298.4
Q ss_pred hhHHHHHhhcCCCcEeeccCCCCCCCCCCcCcccccccccccCHHHHHHHHHcCcc-CcEEeccCCcccChhHHHHHHhc
Q 046157 133 SDLIAVAETCEFLEVLDISYPENDSSFLPQGFQNIQSFSFYITDSGIEALSMKLKR-LKRINLSGNFFITDKSLMFLSSN 211 (577)
Q Consensus 133 ~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~-L~~L~l~~~~~~~~~~~~~l~~~ 211 (577)
..+..+...+++|++|+++++. +++..+..+...+++ |++|++++|..+++.++..+...
T Consensus 102 ~~l~~l~~~~~~L~~L~L~~~~-------------------i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~ 162 (592)
T 3ogk_B 102 PWVTEISNNLRQLKSVHFRRMI-------------------VSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTH 162 (592)
T ss_dssp HHHHHHHHHCTTCCEEEEESCB-------------------CCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHH
T ss_pred HHHHHHHhhCCCCCeEEeeccE-------------------ecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhh
Confidence 3456666678888888888877 777777777655555 88888888776777777777777
Q ss_pred CCCCcEEEeccCCCC--CHHHHHHHHhcCCCccEEEecCCCCCCcc-hhHHHHhhhhcCCCEEEcCCCCCChHHHHHHHh
Q 046157 212 LVLLREILIRDCDFI--TQSGISFAMRNSPNLVSISVNGIGIPTID-SCFKESFAYARGLCEIDLSNSFISDELLRLLGE 288 (577)
Q Consensus 212 ~~~L~~L~l~~~~~~--~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~l~~l~~ 288 (577)
+++|++|++.+|... ....+..+...+++|++|++.++...... ..+...+..+++|++|++.++.+.. +.....
T Consensus 163 ~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~--l~~~~~ 240 (592)
T 3ogk_B 163 CRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE--LVGFFK 240 (592)
T ss_dssp CTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG--GHHHHH
T ss_pred CCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH--HHHHHh
Confidence 888888888877421 12225556677888888888877654333 3455556778888888888876654 334455
Q ss_pred cCCCCcEEEecCCCCCCH-HHHHHHHhcCCCcCeeecccccccChHHHHHHHhcCCCCCEEeecCCCCCChHHHHHHHhh
Q 046157 289 ACLPLKKLVLSHCYNFTL-AGISFLLSKYQSLEHLNLEAANFLEDESMIDLSKFLTSLNFIDLGFCAKLTNSTFFTILRE 367 (577)
Q Consensus 289 ~~~~L~~L~l~~~~~~~~-~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~l~~~ 367 (577)
.+++|++|.+........ ......+..+++|+.|.+.+.. ...+..+...+++|++|++++|. +++..+..+...
T Consensus 241 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~---~~~l~~~~~~~~~L~~L~Ls~~~-l~~~~~~~~~~~ 316 (592)
T 3ogk_B 241 AAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMG---PNEMPILFPFAAQIRKLDLLYAL-LETEDHCTLIQK 316 (592)
T ss_dssp HCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCC---TTTGGGGGGGGGGCCEEEETTCC-CCHHHHHHHHTT
T ss_pred hhhHHHhhcccccccccchHHHHHHhhccccccccCccccc---hhHHHHHHhhcCCCcEEecCCCc-CCHHHHHHHHHh
Confidence 578888888875322210 1111113456778888776642 23334444557788888888876 777777777778
Q ss_pred CCCCCeEEeeeccCCCCcccccccCCCCccEEEcCC----------CCCCCHHHHHHHHhhCCCccEEecCCCCCCCHHH
Q 046157 368 CPLLSEIKMETTNLGLDDFTTPLVINPQVKSLHLAR----------NGNLSDESLKKLAILCPNLEVIDLSHCLGITEEG 437 (577)
Q Consensus 368 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~----------~~~l~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~ 437 (577)
+++|++|++. +.+...........+++|++|++++ |..+++.++..+...+++|++|++ +|..+++.+
T Consensus 317 ~~~L~~L~L~-~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l-~~~~l~~~~ 394 (592)
T 3ogk_B 317 CPNLEVLETR-NVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAV-YVSDITNES 394 (592)
T ss_dssp CTTCCEEEEE-GGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEE-EESCCCHHH
T ss_pred CcCCCEEecc-CccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEe-ecCCccHHH
Confidence 8888888887 3333222222235678888888884 778999999988888999999999 555899999
Q ss_pred HHHHHhhCCCCcEEEccc---ccccccc----c---ccccCCCceEEEccCC--CCCHHHHHHHHHhCCCccEEecCCCC
Q 046157 438 IGEILKSCCEIKCLEIKR---CRAVFDL----G---IDLELPKLEVLQASGS--ALNDHALKMIANTCSRILHLDLDNCL 505 (577)
Q Consensus 438 ~~~~~~~~~~L~~L~l~~---~~~l~~~----~---~~~~~~~L~~L~l~~~--~i~~~~~~~l~~~~~~L~~L~l~~c~ 505 (577)
+..+...+++|+.|++++ |..+++. + ....+++|+.|+++.| .+++..+..+...+++|+.|++++|.
T Consensus 395 ~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~ 474 (592)
T 3ogk_B 395 LESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVG 474 (592)
T ss_dssp HHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCC
T ss_pred HHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCC
Confidence 998888899999999984 4556653 1 2346999999999864 48999999998889999999999875
Q ss_pred CCChhhHHHHHhhCCCCcEEEecCCCCCcHHHHHHHHHhCCCCceeccCCCCCCChhhhhhh
Q 046157 506 NVTTSGVKEVVEHCRTLREINLRWCDEVNVDIVAWMVFSRPSLRKIIPPCGFAPTESQKNFF 567 (577)
Q Consensus 506 ~l~~~~l~~~~~~~~~L~~L~l~~c~~~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~ 567 (577)
+++.++..++.+|++|++|++++|+ +++.++..+...+|+|+.|+++++. +++...+.+
T Consensus 475 -l~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~ls~n~-it~~~~~~l 533 (592)
T 3ogk_B 475 -ESDEGLMEFSRGCPNLQKLEMRGCC-FSERAIAAAVTKLPSLRYLWVQGYR-ASMTGQDLM 533 (592)
T ss_dssp -SSHHHHHHHHTCCTTCCEEEEESCC-CBHHHHHHHHHHCSSCCEEEEESCB-CCTTCTTGG
T ss_pred -CCHHHHHHHHhcCcccCeeeccCCC-CcHHHHHHHHHhcCccCeeECcCCc-CCHHHHHHH
Confidence 9998999988999999999999998 8988899888999999999999876 777654333
No 4
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=100.00 E-value=5.5e-32 Score=280.95 Aligned_cols=447 Identities=17% Similarity=0.193 Sum_probs=260.4
Q ss_pred ceecccCccCCchhHHHHHhhcCCCccEEeccCCCCcChh-------------hHHHHHHcCCCCCeeecCCCccccchh
Q 046157 68 KKIDLSEFQGDPNSILYLISRSGLDLESLNISNLKSFPFM-------------GLKELGTKMKNLKELNCSKNFSFRDSD 134 (577)
Q Consensus 68 ~~l~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~-------------~l~~~~~~~~~L~~L~l~~~~~~~~~~ 134 (577)
+.+++..+...... .+...++++++|++.++..+.+. .+..+...+++|++|+++++ .+++..
T Consensus 46 ~~l~~~~~~~~~~~---~~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~-~~~~~~ 121 (594)
T 2p1m_B 46 RKVFIGNCYAVSPA---TVIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRM-VVTDDC 121 (594)
T ss_dssp CEEEESSTTSSCHH---HHHHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESC-BCCHHH
T ss_pred eEEeeccccccCHH---HHHhhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCc-EEcHHH
Confidence 45555554332221 22334566777777665432211 12334444555555555555 244444
Q ss_pred HHHHHhhcCCCcEeeccCCCCCCCCCCcCcccccccccccCHHHHHHHHHcCccCcEEeccCCcccCh---hHHHHHHhc
Q 046157 135 LIAVAETCEFLEVLDISYPENDSSFLPQGFQNIQSFSFYITDSGIEALSMKLKRLKRINLSGNFFITD---KSLMFLSSN 211 (577)
Q Consensus 135 l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~---~~~~~l~~~ 211 (577)
+..+...+++|++|++.+|. .+++.++..+...+++|++|++++|. +++ ..+..+...
T Consensus 122 ~~~l~~~~~~L~~L~L~~~~------------------~~~~~~l~~~~~~~~~L~~L~L~~~~-i~~~~~~~l~~~~~~ 182 (594)
T 2p1m_B 122 LELIAKSFKNFKVLVLSSCE------------------GFSTDGLAAIAATCRNLKELDLRESD-VDDVSGHWLSHFPDT 182 (594)
T ss_dssp HHHHHHHCTTCCEEEEESCE------------------EEEHHHHHHHHHHCTTCCEEECTTCE-EECCCGGGGGGSCTT
T ss_pred HHHHHHhCCCCcEEeCCCcC------------------CCCHHHHHHHHHhCCCCCEEeCcCCc-cCCcchHHHHHHhhc
Confidence 44444445555555555553 24444455554455555555555542 221 112222334
Q ss_pred CCCCcEEEeccCC-CCCHHHHHHHHhcCCCccEEEecCCCCCCcchhHHHHhhhhcCCCEEEcCCCC--CChHHHHH---
Q 046157 212 LVLLREILIRDCD-FITQSGISFAMRNSPNLVSISVNGIGIPTIDSCFKESFAYARGLCEIDLSNSF--ISDELLRL--- 285 (577)
Q Consensus 212 ~~~L~~L~l~~~~-~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~--~~~~~l~~--- 285 (577)
+++|++|++.++. .++...+..+...+++|+.|++.++.. . ..++..+..+++|++|++..+. +....+..
T Consensus 183 ~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~--~-~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~ 259 (594)
T 2p1m_B 183 YTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVP--L-EKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSV 259 (594)
T ss_dssp CCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSC--H-HHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHH
T ss_pred CCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCc--H-HHHHHHHhcCCcceEcccccccCccchhhHHHHHH
Confidence 4555555555543 334444444444555555555554411 1 1133444455555555544432 22222111
Q ss_pred HHhcCCCCcEEEecCCCCCCHHHHHHHHhcCCCcCeeecccccccChHHHHHHHhcCCCCCEEeecCCCCCChHHHHHHH
Q 046157 286 LGEACLPLKKLVLSHCYNFTLAGISFLLSKYQSLEHLNLEAANFLEDESMIDLSKFLTSLNFIDLGFCAKLTNSTFFTIL 365 (577)
Q Consensus 286 l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~l~ 365 (577)
....+++|+.+. +........+..+...+++|++|+++++. +++..+..+...+++|+.|++.+| +++.++..+.
T Consensus 260 ~l~~~~~L~~Ls--~~~~~~~~~l~~~~~~~~~L~~L~L~~~~-l~~~~l~~~~~~~~~L~~L~l~~~--~~~~~l~~l~ 334 (594)
T 2p1m_B 260 ALSGCKELRCLS--GFWDAVPAYLPAVYSVCSRLTTLNLSYAT-VQSYDLVKLLCQCPKLQRLWVLDY--IEDAGLEVLA 334 (594)
T ss_dssp HHHTCTTCCEEE--CCBTCCGGGGGGGHHHHTTCCEEECTTCC-CCHHHHHHHHTTCTTCCEEEEEGG--GHHHHHHHHH
T ss_pred HHhcCCCccccc--CCcccchhhHHHHHHhhCCCCEEEccCCC-CCHHHHHHHHhcCCCcCEEeCcCc--cCHHHHHHHH
Confidence 112244455441 11111222222223344455555555554 444444444444455555555543 3344444444
Q ss_pred hhCCCCCeEEeeeccCCCCcccccccCCCCccEEEcCCCCCCCHHHHHHHHhhCCCccEEecCCCCCCCHHHHHHHHhhC
Q 046157 366 RECPLLSEIKMETTNLGLDDFTTPLVINPQVKSLHLARNGNLSDESLKKLAILCPNLEVIDLSHCLGITEEGIGEILKSC 445 (577)
Q Consensus 366 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 445 (577)
..|++|++|++.++.... ..++..+++.++..+...+++|+.|.++ |..+++.++..+...+
T Consensus 335 ~~~~~L~~L~L~~~~~~g-----------------~~~~~~l~~~~l~~l~~~~~~L~~L~~~-~~~l~~~~~~~l~~~~ 396 (594)
T 2p1m_B 335 STCKDLRELRVFPSEPFV-----------------MEPNVALTEQGLVSVSMGCPKLESVLYF-CRQMTNAALITIARNR 396 (594)
T ss_dssp HHCTTCCEEEEECSCTTC-----------------SSCSSCCCHHHHHHHHHHCTTCCEEEEE-ESCCCHHHHHHHHHHC
T ss_pred HhCCCCCEEEEecCcccc-----------------cccCCCCCHHHHHHHHHhchhHHHHHHh-cCCcCHHHHHHHHhhC
Confidence 444444444443321000 0335668899999888889999999764 5589999998888899
Q ss_pred CCCcEEEcc-----cccccccc----c---ccccCCCceEEEccCCCCCHHHHHHHHHhCCCccEEecCCCCCCChhhHH
Q 046157 446 CEIKCLEIK-----RCRAVFDL----G---IDLELPKLEVLQASGSALNDHALKMIANTCSRILHLDLDNCLNVTTSGVK 513 (577)
Q Consensus 446 ~~L~~L~l~-----~~~~l~~~----~---~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~c~~l~~~~l~ 513 (577)
++|+.|+++ +|..++.. + +...+++|+.|++++ .+++.++..+...+++|+.|++++|. +++.++.
T Consensus 397 ~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~-i~~~~~~ 474 (594)
T 2p1m_B 397 PNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAG-DSDLGMH 474 (594)
T ss_dssp TTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCC-SSHHHHH
T ss_pred CCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCC-CcHHHHH
Confidence 999999999 56777732 2 234789999999988 89999999998889999999999985 8999999
Q ss_pred HHHhhCCCCcEEEecCCCCCcHHHHHHHHHhCCCCceeccCCCCCCChhhhhhh
Q 046157 514 EVVEHCRTLREINLRWCDEVNVDIVAWMVFSRPSLRKIIPPCGFAPTESQKNFF 567 (577)
Q Consensus 514 ~~~~~~~~L~~L~l~~c~~~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~ 567 (577)
.+..+|++|++|++++|+. ++.++..+...+|+|+.|++++|.. ++...+.+
T Consensus 475 ~l~~~~~~L~~L~L~~n~~-~~~~~~~~~~~l~~L~~L~l~~~~~-~~~~~~~l 526 (594)
T 2p1m_B 475 HVLSGCDSLRKLEIRDCPF-GDKALLANASKLETMRSLWMSSCSV-SFGACKLL 526 (594)
T ss_dssp HHHHHCTTCCEEEEESCSC-CHHHHHHTGGGGGGSSEEEEESSCC-BHHHHHHH
T ss_pred HHHhcCCCcCEEECcCCCC-cHHHHHHHHHhCCCCCEEeeeCCCC-CHHHHHHH
Confidence 8888999999999999976 8888888888899999999998865 65555444
No 5
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.97 E-value=5.6e-28 Score=242.49 Aligned_cols=410 Identities=21% Similarity=0.246 Sum_probs=268.3
Q ss_pred CCccEEeccCCCCcChhhHHHHHHcCCCCCeeecCCCccccch---hHHHHHhhcCCCcEeeccCCCCCCCCCCcCcccc
Q 046157 91 LDLESLNISNLKSFPFMGLKELGTKMKNLKELNCSKNFSFRDS---DLIAVAETCEFLEVLDISYPENDSSFLPQGFQNI 167 (577)
Q Consensus 91 ~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~---~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 167 (577)
+.+++|+++++. ++...+..+...+++|++|+++++ .+... .+......+++|++|+++++.
T Consensus 3 ~~l~~L~Ls~~~-l~~~~~~~~~~~~~~L~~L~L~~~-~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~------------- 67 (461)
T 1z7x_W 3 LDIQSLDIQCEE-LSDARWAELLPLLQQCQVVRLDDC-GLTEARCKDISSALRVNPALAELNLRSNE------------- 67 (461)
T ss_dssp EEEEEEEEESCC-CCHHHHHHHHHHHTTCSEEEEESS-CCCHHHHHHHHHHHHTCTTCCEEECTTCC-------------
T ss_pred ccceehhhhhcc-cCchhHHHHHhhcCCccEEEccCC-CCCHHHHHHHHHHHHhCCCcCEEeCCCCc-------------
Confidence 456777776544 666666666777888888888877 35444 334445567888888888887
Q ss_pred cccccccCHHHHHHHHHcCc----cCcEEeccCCcccChhH---HHHHHhcCCCCcEEEeccCCCCCHHHHHHHHhc---
Q 046157 168 QSFSFYITDSGIEALSMKLK----RLKRINLSGNFFITDKS---LMFLSSNLVLLREILIRDCDFITQSGISFAMRN--- 237 (577)
Q Consensus 168 ~~~~~~l~~~~~~~l~~~~~----~L~~L~l~~~~~~~~~~---~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~--- 237 (577)
+++.++..+...++ +|++|++++| .+++.+ +......+++|++|+++++. +.+.+...+...
T Consensus 68 ------l~~~~~~~l~~~l~~~~~~L~~L~L~~n-~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~-i~~~~~~~l~~~l~~ 139 (461)
T 1z7x_W 68 ------LGDVGVHCVLQGLQTPSCKIQKLSLQNC-CLTGAGCGVLSSTLRTLPTLQELHLSDNL-LGDAGLQLLCEGLLD 139 (461)
T ss_dssp ------CHHHHHHHHHHTTCSTTCCCCEEECTTS-CCBGGGHHHHHHHTTSCTTCCEEECCSSB-CHHHHHHHHHHHHTS
T ss_pred ------CChHHHHHHHHHHhhCCCceeEEEccCC-CCCHHHHHHHHHHHccCCceeEEECCCCc-CchHHHHHHHHHHhc
Confidence 77777777776666 6888888886 455433 34444667888888888764 555444443332
Q ss_pred -CCCccEEEecCCCCCCcc-hhHHHHhhhhcCCCEEEcCCCCCChHHHHHHHhc----CCCCcEEEecCCCCCCH--HHH
Q 046157 238 -SPNLVSISVNGIGIPTID-SCFKESFAYARGLCEIDLSNSFISDELLRLLGEA----CLPLKKLVLSHCYNFTL--AGI 309 (577)
Q Consensus 238 -~~~L~~L~l~~~~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~l~~l~~~----~~~L~~L~l~~~~~~~~--~~l 309 (577)
.++|++|++.++.+.... ..+...+..+++|++|+++++.+.+.....+... .++|++|++++|..... ..+
T Consensus 140 ~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l 219 (461)
T 1z7x_W 140 PQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDL 219 (461)
T ss_dssp TTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHH
T ss_pred CCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHH
Confidence 457888888887653322 2455666777888888888888877666655542 45888888887743321 124
Q ss_pred HHHHhcCCCcCeeecccccccChHHHHHHHh----cCCCCCEEeecCCCCCChHHHHHHHhhCCCCCeEEeeeccCCCCc
Q 046157 310 SFLLSKYQSLEHLNLEAANFLEDESMIDLSK----FLTSLNFIDLGFCAKLTNSTFFTILRECPLLSEIKMETTNLGLDD 385 (577)
Q Consensus 310 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~----~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~ 385 (577)
...+..+++|++|+++++. +++.+...+.. .+++|++|++++| .+++.+...+..
T Consensus 220 ~~~l~~~~~L~~L~Ls~n~-l~~~~~~~l~~~~~~~~~~L~~L~L~~n-~l~~~~~~~l~~------------------- 278 (461)
T 1z7x_W 220 CGIVASKASLRELALGSNK-LGDVGMAELCPGLLHPSSRLRTLWIWEC-GITAKGCGDLCR------------------- 278 (461)
T ss_dssp HHHHHHCTTCCEEECCSSB-CHHHHHHHHHHHHTSTTCCCCEEECTTS-CCCHHHHHHHHH-------------------
T ss_pred HHHHHhCCCccEEeccCCc-CChHHHHHHHHHHhcCCCCceEEECcCC-CCCHHHHHHHHH-------------------
Confidence 4445567788888888776 55655544432 3567777777776 466655433321
Q ss_pred ccccccCCCCccEEEcCCCCCCCHHHHHHHHhh----CCCccEEecCCCCCCCHHH---HHHHHhhCCCCcEEEcccccc
Q 046157 386 FTTPLVINPQVKSLHLARNGNLSDESLKKLAIL----CPNLEVIDLSHCLGITEEG---IGEILKSCCEIKCLEIKRCRA 458 (577)
Q Consensus 386 ~~~~~~~~~~L~~L~l~~~~~l~~~~l~~l~~~----~~~L~~L~l~~~~~~~~~~---~~~~~~~~~~L~~L~l~~~~~ 458 (577)
.+..+++|++|++++|. +++.+...+... .++|++|++++| .+++.+ +...+..+++|+.|++++|.
T Consensus 279 ---~l~~~~~L~~L~Ls~n~-i~~~~~~~l~~~l~~~~~~L~~L~L~~n-~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~- 352 (461)
T 1z7x_W 279 ---VLRAKESLKELSLAGNE-LGDEGARLLCETLLEPGCQLESLWVKSC-SFTAACCSHFSSVLAQNRFLLELQISNNR- 352 (461)
T ss_dssp ---HHHHCTTCCEEECTTCC-CHHHHHHHHHHHHTSTTCCCCEEECTTS-CCBGGGHHHHHHHHHHCSSCCEEECCSSB-
T ss_pred ---HHhhCCCcceEECCCCC-CchHHHHHHHHHhccCCccceeeEcCCC-CCchHHHHHHHHHHhhCCCccEEEccCCc-
Confidence 12224455555555553 555555544432 257888888877 465543 34445667888888888775
Q ss_pred ccccccc-------ccCCCceEEEccCCCCCHHHHHHHH---HhCCCccEEecCCCCCCChhhHHHHHhhCC----CCcE
Q 046157 459 VFDLGID-------LELPKLEVLQASGSALNDHALKMIA---NTCSRILHLDLDNCLNVTTSGVKEVVEHCR----TLRE 524 (577)
Q Consensus 459 l~~~~~~-------~~~~~L~~L~l~~~~i~~~~~~~l~---~~~~~L~~L~l~~c~~l~~~~l~~~~~~~~----~L~~ 524 (577)
+++.+.. ...++|++|++++|.+++.+...+. ..+++|++|++++| .+++.++..+...++ .|+.
T Consensus 353 i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N-~i~~~~~~~l~~~l~~~~~~L~~ 431 (461)
T 1z7x_W 353 LEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNN-CLGDAGILQLVESVRQPGCLLEQ 431 (461)
T ss_dssp CHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSS-SCCHHHHHHHHHHHTSTTCCCCE
T ss_pred cccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCC-CCCHHHHHHHHHHhccCCcchhh
Confidence 5443311 1267888888888888886554443 35789999999987 488888887776554 4888
Q ss_pred EEecCCCCCc--HHHHHHHHHhCCCCcee
Q 046157 525 INLRWCDEVN--VDIVAWMVFSRPSLRKI 551 (577)
Q Consensus 525 L~l~~c~~~~--~~~~~~~~~~~~~L~~l 551 (577)
|.+.++..-. .+.+..+.+..|.|+.+
T Consensus 432 L~~~~~~~~~~~~~~l~~l~~~~p~l~i~ 460 (461)
T 1z7x_W 432 LVLYDIYWSEEMEDRLQALEKDKPSLRVI 460 (461)
T ss_dssp EECTTCCCCHHHHHHHHHHHHHCTTSEEE
T ss_pred eeecccccCHHHHHHHHHHhccCCCcEee
Confidence 8888864432 34566777888888765
No 6
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.97 E-value=1.9e-27 Score=238.57 Aligned_cols=387 Identities=18% Similarity=0.238 Sum_probs=296.3
Q ss_pred cCCCcEeeccCCCCCCCCCCcCcccccccccccCHHHHHHHHHcCccCcEEeccCCcccChhH---HHHHHhcCCCCcEE
Q 046157 142 CEFLEVLDISYPENDSSFLPQGFQNIQSFSFYITDSGIEALSMKLKRLKRINLSGNFFITDKS---LMFLSSNLVLLREI 218 (577)
Q Consensus 142 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~---~~~l~~~~~~L~~L 218 (577)
.++|++|+++++. +++.....+...+++|++|++++|. +++.. +......+++|++|
T Consensus 2 ~~~l~~L~Ls~~~-------------------l~~~~~~~~~~~~~~L~~L~L~~~~-l~~~~~~~l~~~l~~~~~L~~L 61 (461)
T 1z7x_W 2 SLDIQSLDIQCEE-------------------LSDARWAELLPLLQQCQVVRLDDCG-LTEARCKDISSALRVNPALAEL 61 (461)
T ss_dssp CEEEEEEEEESCC-------------------CCHHHHHHHHHHHTTCSEEEEESSC-CCHHHHHHHHHHHHTCTTCCEE
T ss_pred Cccceehhhhhcc-------------------cCchhHHHHHhhcCCccEEEccCCC-CCHHHHHHHHHHHHhCCCcCEE
Confidence 3678999999988 8888888777789999999999974 66553 44455678999999
Q ss_pred EeccCCCCCHHHHHHHHhcCC----CccEEEecCCCCCCcc-hhHHHHhhhhcCCCEEEcCCCCCChHHHHHHHhc----
Q 046157 219 LIRDCDFITQSGISFAMRNSP----NLVSISVNGIGIPTID-SCFKESFAYARGLCEIDLSNSFISDELLRLLGEA---- 289 (577)
Q Consensus 219 ~l~~~~~~~~~~~~~~~~~~~----~L~~L~l~~~~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~l~~l~~~---- 289 (577)
+++++. +.+.+...+...++ +|++|++.++.+.... ..++..+..+++|++|+++++.+.+..+..+...
T Consensus 62 ~Ls~n~-l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~ 140 (461)
T 1z7x_W 62 NLRSNE-LGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDP 140 (461)
T ss_dssp ECTTCC-CHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTST
T ss_pred eCCCCc-CChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcC
Confidence 999864 66666666667676 7999999998764333 4567888899999999999999988877776654
Q ss_pred CCCCcEEEecCCCCCC--HHHHHHHHhcCCCcCeeecccccccChHHHHHHHh----cCCCCCEEeecCCCCCChHH---
Q 046157 290 CLPLKKLVLSHCYNFT--LAGISFLLSKYQSLEHLNLEAANFLEDESMIDLSK----FLTSLNFIDLGFCAKLTNST--- 360 (577)
Q Consensus 290 ~~~L~~L~l~~~~~~~--~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~----~~~~L~~L~l~~~~~~~~~~--- 360 (577)
.++|++|++++|.... ...+...+..+++|++|+++++. +++.+...+.. ..++|++|++++|. ++..+
T Consensus 141 ~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~~L~~L~L~~n~-l~~~~~~~ 218 (461)
T 1z7x_W 141 QCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNND-INEAGVRVLCQGLKDSPCQLEALKLESCG-VTSDNCRD 218 (461)
T ss_dssp TCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSB-CHHHHHHHHHHHHHHSCCCCCEEECTTSC-CBTTHHHH
T ss_pred CCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCC-cchHHHHHHHHHHhcCCCCceEEEccCCC-CcHHHHHH
Confidence 4579999999985332 12345556778999999999998 67766666554 35699999999975 55544
Q ss_pred HHHHHhhCCCCCeEEeeeccCCCCcc---ccc-ccCCCCccEEEcCCCCCCCHHHHHHHH---hhCCCccEEecCCCCCC
Q 046157 361 FFTILRECPLLSEIKMETTNLGLDDF---TTP-LVINPQVKSLHLARNGNLSDESLKKLA---ILCPNLEVIDLSHCLGI 433 (577)
Q Consensus 361 l~~l~~~~~~L~~L~l~~~~~~~~~~---~~~-~~~~~~L~~L~l~~~~~l~~~~l~~l~---~~~~~L~~L~l~~~~~~ 433 (577)
+......+++|++|++++|.++.... ... ...+++|+.|++++|. +++.+...+. ..+++|++|++++| .+
T Consensus 219 l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~-l~~~~~~~l~~~l~~~~~L~~L~Ls~n-~i 296 (461)
T 1z7x_W 219 LCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECG-ITAKGCGDLCRVLRAKESLKELSLAGN-EL 296 (461)
T ss_dssp HHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSC-CCHHHHHHHHHHHHHCTTCCEEECTTC-CC
T ss_pred HHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCC-CCHHHHHHHHHHHhhCCCcceEECCCC-CC
Confidence 44455679999999999997654331 111 2358999999999985 8887754444 45899999999998 68
Q ss_pred CHHHHHHHHhh----CCCCcEEEccccccccccc------ccccCCCceEEEccCCCCCHHHHHHHHHh----CCCccEE
Q 046157 434 TEEGIGEILKS----CCEIKCLEIKRCRAVFDLG------IDLELPKLEVLQASGSALNDHALKMIANT----CSRILHL 499 (577)
Q Consensus 434 ~~~~~~~~~~~----~~~L~~L~l~~~~~l~~~~------~~~~~~~L~~L~l~~~~i~~~~~~~l~~~----~~~L~~L 499 (577)
++.+...+... .++|+.|++++|. ++..+ ....+++|++|++++|.+++.+...+.+. .++|++|
T Consensus 297 ~~~~~~~l~~~l~~~~~~L~~L~L~~n~-l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L 375 (461)
T 1z7x_W 297 GDEGARLLCETLLEPGCQLESLWVKSCS-FTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVL 375 (461)
T ss_dssp HHHHHHHHHHHHTSTTCCCCEEECTTSC-CBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEE
T ss_pred chHHHHHHHHHhccCCccceeeEcCCCC-CchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEE
Confidence 77766655543 3699999999998 55443 12367999999999999999888777653 5799999
Q ss_pred ecCCCCCCChhhHHHH---HhhCCCCcEEEecCCCCCcHHHHHHHHHhCC----CCceeccCCC
Q 046157 500 DLDNCLNVTTSGVKEV---VEHCRTLREINLRWCDEVNVDIVAWMVFSRP----SLRKIIPPCG 556 (577)
Q Consensus 500 ~l~~c~~l~~~~l~~~---~~~~~~L~~L~l~~c~~~~~~~~~~~~~~~~----~L~~l~~~~~ 556 (577)
++++| .+++.+...+ +..+++|++|++++| .+++.++..+...+| .|+.|.+...
T Consensus 376 ~L~~n-~i~~~~~~~l~~~l~~~~~L~~L~l~~N-~i~~~~~~~l~~~l~~~~~~L~~L~~~~~ 437 (461)
T 1z7x_W 376 WLADC-DVSDSSCSSLAATLLANHSLRELDLSNN-CLGDAGILQLVESVRQPGCLLEQLVLYDI 437 (461)
T ss_dssp ECTTS-CCCHHHHHHHHHHHHHCCCCCEEECCSS-SCCHHHHHHHHHHHTSTTCCCCEEECTTC
T ss_pred ECCCC-CCChhhHHHHHHHHHhCCCccEEECCCC-CCCHHHHHHHHHHhccCCcchhheeeccc
Confidence 99998 5887655544 366899999999999 577777777776555 4899988753
No 7
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.94 E-value=6.1e-26 Score=217.46 Aligned_cols=298 Identities=18% Similarity=0.181 Sum_probs=172.6
Q ss_pred CCCCCChHHHHHHHHhcCCccchhhhHHhhHHHHhhhccccccccccCCCCCchHHHHhhcccCceecccCccCCchhHH
Q 046157 4 NPLDLPPECWELIFNSLNDQSHFESLSLVSHRFLSITNYLRNSLKLTDPSTPFLPQLFNRFQNLKKIDLSEFQGDPNSIL 83 (577)
Q Consensus 4 ~~~~LP~evl~~I~~~L~~~~~~~~~~~vcr~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~l 83 (577)
...+||+||+.+||+|| +.+|+.+++.|||+|++++... ..++.+++++.... ...+
T Consensus 8 ~~~~LP~eil~~If~~L-~~~d~~~~~~vc~~W~~~~~~~---------------------~~~~~l~l~~~~~~-~~~~ 64 (336)
T 2ast_B 8 SWDSLPDELLLGIFSCL-CLPELLKVSGVCKRWYRLASDE---------------------SLWQTLDLTGKNLH-PDVT 64 (336)
T ss_dssp CSSSSCHHHHHHHHTTS-CHHHHHHTTSSCHHHHHHHTCS---------------------TTSSEEECTTCBCC-HHHH
T ss_pred ChhhCCHHHHHHHHHhC-CHHHHHHHHHHHHHHHHHhcCc---------------------hhheeeccccccCC-HHHH
Confidence 45789999999999999 6999999999999999887211 12356666554322 1221
Q ss_pred HHHhhcCCCccEEeccCCCCcChhhHHHHHHcCCCCCeeecCCCccccchhHHHHHhhcCCCcEeeccCCCCCCCCCCcC
Q 046157 84 YLISRSGLDLESLNISNLKSFPFMGLKELGTKMKNLKELNCSKNFSFRDSDLIAVAETCEFLEVLDISYPENDSSFLPQG 163 (577)
Q Consensus 84 ~~~~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~ 163 (577)
..+. .++++.|++.++. +..... . ...+++|++|+++++ .+....+......+++|++|++++|.
T Consensus 65 ~~~~--~~~l~~L~l~~n~-l~~~~~-~-~~~~~~L~~L~L~~~-~l~~~~~~~~~~~~~~L~~L~L~~~~--------- 129 (336)
T 2ast_B 65 GRLL--SQGVIAFRCPRSF-MDQPLA-E-HFSPFRVQHMDLSNS-VIEVSTLHGILSQCSKLQNLSLEGLR--------- 129 (336)
T ss_dssp HHHH--HTTCSEEECTTCE-ECSCCC-S-CCCCBCCCEEECTTC-EECHHHHHHHHTTBCCCSEEECTTCB---------
T ss_pred Hhhh--hccceEEEcCCcc-ccccch-h-hccCCCCCEEEccCC-CcCHHHHHHHHhhCCCCCEEeCcCcc---------
Confidence 1111 2456677666542 111000 0 113566777777666 34444455556666777777777666
Q ss_pred cccccccccccCHHHHHHHHHcCccCcEEeccCCcccChhHHHHHHhcCCCCcEEEeccCCCCCHHHHHHHHhcCC-Ccc
Q 046157 164 FQNIQSFSFYITDSGIEALSMKLKRLKRINLSGNFFITDKSLMFLSSNLVLLREILIRDCDFITQSGISFAMRNSP-NLV 242 (577)
Q Consensus 164 ~~~~~~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~-~L~ 242 (577)
+++.....+. .+++|++|++++|..+++..+..+...+++|++|++++|..+++.++...+..++ +|+
T Consensus 130 ----------l~~~~~~~l~-~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~ 198 (336)
T 2ast_B 130 ----------LSDPIVNTLA-KNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETIT 198 (336)
T ss_dssp ----------CCHHHHHHHT-TCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCC
T ss_pred ----------cCHHHHHHHh-cCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCC
Confidence 5555555554 4666777777665556555555555556666666666664555544444445555 555
Q ss_pred EEEecCCCCCCcchhHHHHhhhhcCCCEEEcCCCCCChHHHHHHHhcCCCCcEEEecCCCCCCHHHHHHHHhcCCCcCee
Q 046157 243 SISVNGIGIPTIDSCFKESFAYARGLCEIDLSNSFISDELLRLLGEACLPLKKLVLSHCYNFTLAGISFLLSKYQSLEHL 322 (577)
Q Consensus 243 ~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L 322 (577)
+|++.++.. .+++..+......+++|++|++++|..+++..+.. +..+++|++|
T Consensus 199 ~L~l~~~~~-------------------------~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~-l~~l~~L~~L 252 (336)
T 2ast_B 199 QLNLSGYRK-------------------------NLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQE-FFQLNYLQHL 252 (336)
T ss_dssp EEECCSCGG-------------------------GSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGG-GGGCTTCCEE
T ss_pred EEEeCCCcc-------------------------cCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHH-HhCCCCCCEe
Confidence 555554421 34444444444445666666666554444333332 3455667777
Q ss_pred ecccccccChHHHHHHHhcCCCCCEEeecCCCCCChHHHHHHHhhCCCCCeEEeeeccCC
Q 046157 323 NLEAANFLEDESMIDLSKFLTSLNFIDLGFCAKLTNSTFFTILRECPLLSEIKMETTNLG 382 (577)
Q Consensus 323 ~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~ 382 (577)
++++|..+.+..+..+.. +++|+.|++++| +++..+..+...++.| ++..|.+.
T Consensus 253 ~l~~~~~~~~~~~~~l~~-~~~L~~L~l~~~--i~~~~~~~l~~~l~~L---~l~~n~l~ 306 (336)
T 2ast_B 253 SLSRCYDIIPETLLELGE-IPTLKTLQVFGI--VPDGTLQLLKEALPHL---QINCSHFT 306 (336)
T ss_dssp ECTTCTTCCGGGGGGGGG-CTTCCEEECTTS--SCTTCHHHHHHHSTTS---EESCCCSC
T ss_pred eCCCCCCCCHHHHHHHhc-CCCCCEEeccCc--cCHHHHHHHHhhCcce---EEecccCc
Confidence 776665455554433433 677777777776 6666666665545544 35555543
No 8
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.90 E-value=1.5e-26 Score=245.56 Aligned_cols=252 Identities=17% Similarity=0.134 Sum_probs=143.6
Q ss_pred CCCCcEEEecCCCCCCHHHHHHHHhcCCCcCeeecccccccChHHHHHHHhcCCCCCEEeecCCCC--CChHHHHHHHhh
Q 046157 290 CLPLKKLVLSHCYNFTLAGISFLLSKYQSLEHLNLEAANFLEDESMIDLSKFLTSLNFIDLGFCAK--LTNSTFFTILRE 367 (577)
Q Consensus 290 ~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~--~~~~~l~~l~~~ 367 (577)
+++|++|+++++.... .+...+..+++|++|+++++. +...........+++|++|+++++.- .....+ ...
T Consensus 293 ~~~L~~L~Ls~n~l~~--~~p~~~~~l~~L~~L~L~~n~-l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l---~~l 366 (768)
T 3rgz_A 293 CDTLTGLDLSGNHFYG--AVPPFFGSCSLLESLALSSNN-FSGELPMDTLLKMRGLKVLDLSFNEFSGELPESL---TNL 366 (768)
T ss_dssp CTTCSEEECCSSEEEE--CCCGGGGGCTTCCEEECCSSE-EEEECCHHHHTTCTTCCEEECCSSEEEECCCTTH---HHH
T ss_pred cCcCCEEECcCCcCCC--ccchHHhcCCCccEEECCCCc-ccCcCCHHHHhcCCCCCEEeCcCCccCccccHHH---Hhh
Confidence 3555666655543211 011113456667777776665 22111111122366777777766541 111112 112
Q ss_pred CCCCCeEEeeeccCCCCcccccccC--CCCccEEEcCCCCCCCHHHHHHHHhhCCCccEEecCCCCCCCHHHHHHHHhhC
Q 046157 368 CPLLSEIKMETTNLGLDDFTTPLVI--NPQVKSLHLARNGNLSDESLKKLAILCPNLEVIDLSHCLGITEEGIGEILKSC 445 (577)
Q Consensus 368 ~~~L~~L~l~~~~~~~~~~~~~~~~--~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 445 (577)
.++|+.|++++|.+.... +..+.. +++|+.|++++|. ++..... ....+++|+.|++++| .++.. +...+..+
T Consensus 367 ~~~L~~L~Ls~N~l~~~~-~~~~~~~~~~~L~~L~L~~n~-l~~~~p~-~l~~l~~L~~L~Ls~N-~l~~~-~p~~l~~l 441 (768)
T 3rgz_A 367 SASLLTLDLSSNNFSGPI-LPNLCQNPKNTLQELYLQNNG-FTGKIPP-TLSNCSELVSLHLSFN-YLSGT-IPSSLGSL 441 (768)
T ss_dssp TTTCSEEECCSSEEEEEC-CTTTTCSTTCCCCEEECCSSE-EEEECCG-GGGGCTTCCEEECCSS-EEESC-CCGGGGGC
T ss_pred hcCCcEEEccCCCcCCCc-ChhhhhcccCCccEEECCCCc-cccccCH-HHhcCCCCCEEECcCC-cccCc-ccHHHhcC
Confidence 236777777766543221 222323 6778888888765 3221111 2235788888888887 33321 11235678
Q ss_pred CCCcEEEccccccccccc-ccccCCCceEEEccCCCCCHHHHHHHHHhCCCccEEecCCCCCCChhhHHHHHhhCCCCcE
Q 046157 446 CEIKCLEIKRCRAVFDLG-IDLELPKLEVLQASGSALNDHALKMIANTCSRILHLDLDNCLNVTTSGVKEVVEHCRTLRE 524 (577)
Q Consensus 446 ~~L~~L~l~~~~~l~~~~-~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~c~~l~~~~l~~~~~~~~~L~~ 524 (577)
++|+.|++++|....... ....+++|++|++++|.++......+ ..+++|+.|++++|. ++... ...+..+++|+.
T Consensus 442 ~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l-~~l~~L~~L~L~~N~-l~~~~-p~~~~~l~~L~~ 518 (768)
T 3rgz_A 442 SKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGL-SNCTNLNWISLSNNR-LTGEI-PKWIGRLENLAI 518 (768)
T ss_dssp TTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGG-GGCTTCCEEECCSSC-CCSCC-CGGGGGCTTCCE
T ss_pred CCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHH-hcCCCCCEEEccCCc-cCCcC-ChHHhcCCCCCE
Confidence 889999988887433332 34468889999999988764332222 357899999999875 54322 223467889999
Q ss_pred EEecCCCCCcHHHHHHHHHhCCCCceeccCCCC
Q 046157 525 INLRWCDEVNVDIVAWMVFSRPSLRKIIPPCGF 557 (577)
Q Consensus 525 L~l~~c~~~~~~~~~~~~~~~~~L~~l~~~~~~ 557 (577)
|++++|.... .+......+++|+.|+++.+.
T Consensus 519 L~L~~N~l~~--~~p~~l~~l~~L~~L~Ls~N~ 549 (768)
T 3rgz_A 519 LKLSNNSFSG--NIPAELGDCRSLIWLDLNTNL 549 (768)
T ss_dssp EECCSSCCEE--ECCGGGGGCTTCCEEECCSSE
T ss_pred EECCCCcccC--cCCHHHcCCCCCCEEECCCCc
Confidence 9999985431 122334578999999888653
No 9
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.90 E-value=7.9e-26 Score=234.93 Aligned_cols=278 Identities=21% Similarity=0.174 Sum_probs=143.6
Q ss_pred hhhhcCCCEEEcCCCCCChHHHHHHHhcCCCCcEEEecCCCCCCHHHHHHHHhcCCCcCeeecccccccChHHHHHHHhc
Q 046157 262 FAYARGLCEIDLSNSFISDELLRLLGEACLPLKKLVLSHCYNFTLAGISFLLSKYQSLEHLNLEAANFLEDESMIDLSKF 341 (577)
Q Consensus 262 ~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~ 341 (577)
+..+++|++|+++++.+.. +......+++|++|+++++...... ...+..+++|++|+++++....... ......
T Consensus 274 ~~~l~~L~~L~l~~n~l~~--lp~~l~~l~~L~~L~l~~n~l~~~~--~~~~~~l~~L~~L~l~~n~~~~~~~-~~~~~~ 348 (606)
T 3t6q_A 274 FHCFSGLQELDLTATHLSE--LPSGLVGLSTLKKLVLSANKFENLC--QISASNFPSLTHLSIKGNTKRLELG-TGCLEN 348 (606)
T ss_dssp TTTCTTCSEEECTTSCCSC--CCSSCCSCTTCCEEECTTCCCSBGG--GGCGGGCTTCSEEECCSCSSCCBCC-SSTTTT
T ss_pred hccccCCCEEeccCCccCC--CChhhcccccCCEEECccCCcCcCc--hhhhhccCcCCEEECCCCCcccccc-hhhhhc
Confidence 4455666666666665442 1111123566666666665432210 1113456666777666664211110 011123
Q ss_pred CCCCCEEeecCCCCCChHH-HHHHHhhCCCCCeEEeeeccCCCCcccccccCCCCccEEEcCCCCCCCHHHHHHHHhhCC
Q 046157 342 LTSLNFIDLGFCAKLTNST-FFTILRECPLLSEIKMETTNLGLDDFTTPLVINPQVKSLHLARNGNLSDESLKKLAILCP 420 (577)
Q Consensus 342 ~~~L~~L~l~~~~~~~~~~-l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~ 420 (577)
+++|++|+++++. +.... .......+++|++|++++|.+.... ...+..+++|+.|++++|. +...........++
T Consensus 349 l~~L~~L~l~~n~-l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~l~ 425 (606)
T 3t6q_A 349 LENLRELDLSHDD-IETSDCCNLQLRNLSHLQSLNLSYNEPLSLK-TEAFKECPQLELLDLAFTR-LKVKDAQSPFQNLH 425 (606)
T ss_dssp CTTCCEEECCSSC-CCEEEESTTTTTTCTTCCEEECCSCSCEEEC-TTTTTTCTTCSEEECTTCC-EECCTTCCTTTTCT
T ss_pred cCcCCEEECCCCc-cccccCcchhcccCCCCCEEECCCCcCCcCC-HHHhcCCccCCeEECCCCc-CCCcccchhhhCcc
Confidence 5667777766643 22111 0111235667777777666543222 3445666777777777654 22111111123456
Q ss_pred CccEEecCCCCCCCHHHHHHHHhhCCCCcEEEcccccccccc-----cccccCCCceEEEccCCCCCHHHHHHHHHhCCC
Q 046157 421 NLEVIDLSHCLGITEEGIGEILKSCCEIKCLEIKRCRAVFDL-----GIDLELPKLEVLQASGSALNDHALKMIANTCSR 495 (577)
Q Consensus 421 ~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~-----~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~ 495 (577)
+|+.|++++| .++... ...+..+++|+.|++++|. +... .....+++|+.|++++|.++......+ ..+++
T Consensus 426 ~L~~L~l~~n-~l~~~~-~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~-~~l~~ 501 (606)
T 3t6q_A 426 LLKVLNLSHS-LLDISS-EQLFDGLPALQHLNLQGNH-FPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAF-TSLKM 501 (606)
T ss_dssp TCCEEECTTC-CCBTTC-TTTTTTCTTCCEEECTTCB-CGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTT-TTCTT
T ss_pred cCCEEECCCC-ccCCcC-HHHHhCCCCCCEEECCCCC-CCccccccchhhccCCCccEEECCCCccCccChhhh-ccccC
Confidence 7777777776 333221 1224556777777777776 2221 123456777777777776664332222 24677
Q ss_pred ccEEecCCCCCCChhhHHHHHhhCCCCcEEEecCCCCCcHHHHHHHHHhCCCCceeccCCC
Q 046157 496 ILHLDLDNCLNVTTSGVKEVVEHCRTLREINLRWCDEVNVDIVAWMVFSRPSLRKIIPPCG 556 (577)
Q Consensus 496 L~~L~l~~c~~l~~~~l~~~~~~~~~L~~L~l~~c~~~~~~~~~~~~~~~~~L~~l~~~~~ 556 (577)
|+.|++++|. ++...... +.+++.| .|++++|.-.. ........+++|+.|++.++
T Consensus 502 L~~L~Ls~N~-l~~~~~~~-l~~l~~L-~L~L~~N~l~~--~~~~~~~~l~~L~~L~l~~N 557 (606)
T 3t6q_A 502 MNHVDLSHNR-LTSSSIEA-LSHLKGI-YLNLASNHISI--ILPSLLPILSQQRTINLRQN 557 (606)
T ss_dssp CCEEECCSSC-CCGGGGGG-GTTCCSC-EEECCSSCCCC--CCGGGHHHHHTSSEEECTTC
T ss_pred CCEEECCCCc-cCcCChhH-hCccccc-EEECcCCcccc--cCHhhcccCCCCCEEeCCCC
Confidence 7777777763 55443322 3566777 77777763322 12223345677777777764
No 10
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.89 E-value=8.2e-26 Score=239.87 Aligned_cols=420 Identities=19% Similarity=0.134 Sum_probs=256.4
Q ss_pred CCCccEEeccCCCCcChhhHHH--HHHcCCCCCeeecCCCccccchhHHHHHhhcCCCcEeeccCCCCCCCCCCcCcccc
Q 046157 90 GLDLESLNISNLKSFPFMGLKE--LGTKMKNLKELNCSKNFSFRDSDLIAVAETCEFLEVLDISYPENDSSFLPQGFQNI 167 (577)
Q Consensus 90 ~~~L~~L~l~~~~~~~~~~l~~--~~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 167 (577)
.++|++|+++++.. ... +.. ....+++|++|+++++. +.......+...+++|++|++++|.
T Consensus 99 l~~L~~L~Ls~n~l-~~~-~~~~~~l~~l~~L~~L~Ls~n~-l~~~~~~~~~~~l~~L~~L~Ls~n~------------- 162 (768)
T 3rgz_A 99 SASLTSLDLSRNSL-SGP-VTTLTSLGSCSGLKFLNVSSNT-LDFPGKVSGGLKLNSLEVLDLSANS------------- 162 (768)
T ss_dssp CTTCCEEECCSSEE-EEE-GGGGGGGGGCTTCCEEECCSSE-EECCSSCCSCCCCTTCSEEECCSSC-------------
T ss_pred CCCCCEEECCCCcC-CCc-CCChHHHhCCCCCCEEECcCCc-cCCcCCHHHhccCCCCCEEECCCCc-------------
Confidence 35777777776642 110 111 23456777888777662 2111111111356777888887776
Q ss_pred cccccccCHHHHHH--HHHcCccCcEEeccCCcccChhHHHHHHhcCCCCcEEEeccCCCCCHHHHHHHHhcCCCccEEE
Q 046157 168 QSFSFYITDSGIEA--LSMKLKRLKRINLSGNFFITDKSLMFLSSNLVLLREILIRDCDFITQSGISFAMRNSPNLVSIS 245 (577)
Q Consensus 168 ~~~~~~l~~~~~~~--l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~ 245 (577)
++...... ....+++|++|+++++........ ..+++|++|+++++...... .. +..+++|++|+
T Consensus 163 ------l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~----~~l~~L~~L~Ls~n~l~~~~--~~-l~~l~~L~~L~ 229 (768)
T 3rgz_A 163 ------ISGANVVGWVLSDGCGELKHLAISGNKISGDVDV----SRCVNLEFLDVSSNNFSTGI--PF-LGDCSALQHLD 229 (768)
T ss_dssp ------CEEETHHHHHHTTCCTTCCEEECCSSEEESCCBC----TTCTTCCEEECCSSCCCSCC--CB-CTTCCSCCEEE
T ss_pred ------cCCcCChhhhhhccCCCCCEEECCCCcccccCCc----ccCCcCCEEECcCCcCCCCC--cc-cccCCCCCEEE
Confidence 33222222 133678888888887643222111 45788888888876533211 11 46678888888
Q ss_pred ecCCCCCCcchhHHHHhhhhcCCCEEEcCCCCCChHHHHHHHhcCCCCcEEEecCCCCCCHHHHHHHHhcCCCcCeeecc
Q 046157 246 VNGIGIPTIDSCFKESFAYARGLCEIDLSNSFISDELLRLLGEACLPLKKLVLSHCYNFTLAGISFLLSKYQSLEHLNLE 325 (577)
Q Consensus 246 l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~ 325 (577)
+.++.+ ....+..+..+++|++|+++++.+....... .+++|++|++.++..... .-..+...+++|++|+++
T Consensus 230 Ls~n~l---~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~---~l~~L~~L~L~~n~l~~~-ip~~~~~~~~~L~~L~Ls 302 (768)
T 3rgz_A 230 ISGNKL---SGDFSRAISTCTELKLLNISSNQFVGPIPPL---PLKSLQYLSLAENKFTGE-IPDFLSGACDTLTGLDLS 302 (768)
T ss_dssp CCSSCC---CSCHHHHTTTCSSCCEEECCSSCCEESCCCC---CCTTCCEEECCSSEEEES-CCCCSCTTCTTCSEEECC
T ss_pred CcCCcC---CCcccHHHhcCCCCCEEECCCCcccCccCcc---ccCCCCEEECcCCccCCc-cCHHHHhhcCcCCEEECc
Confidence 888764 3446667788888888888888654321111 477888888887643210 000011235788999988
Q ss_pred cccccChHHHHHHHhcCCCCCEEeecCCCCCChHHHHHHHhhCCCCCeEEeeeccCCCCcccccccCCC-CccEEEcCCC
Q 046157 326 AANFLEDESMIDLSKFLTSLNFIDLGFCAKLTNSTFFTILRECPLLSEIKMETTNLGLDDFTTPLVINP-QVKSLHLARN 404 (577)
Q Consensus 326 ~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~-~L~~L~l~~~ 404 (577)
++. ++...... ...+++|++|+++++. +....-......+++|++|++++|.+... .+..+..++ +|+.|++++|
T Consensus 303 ~n~-l~~~~p~~-~~~l~~L~~L~L~~n~-l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~-~p~~l~~l~~~L~~L~Ls~N 378 (768)
T 3rgz_A 303 GNH-FYGAVPPF-FGSCSLLESLALSSNN-FSGELPMDTLLKMRGLKVLDLSFNEFSGE-LPESLTNLSASLLTLDLSSN 378 (768)
T ss_dssp SSE-EEECCCGG-GGGCTTCCEEECCSSE-EEEECCHHHHTTCTTCCEEECCSSEEEEC-CCTTHHHHTTTCSEEECCSS
T ss_pred CCc-CCCccchH-HhcCCCccEEECCCCc-ccCcCCHHHHhcCCCCCEEeCcCCccCcc-ccHHHHhhhcCCcEEEccCC
Confidence 876 32221112 2347889999988865 22111112234688899999988876422 244455555 8999999887
Q ss_pred CCCCHHHHHHHHh-hCCCccEEecCCCCCCCHHHHHHHHhhCCCCcEEEccccccccccc-ccccCCCceEEEccCCCCC
Q 046157 405 GNLSDESLKKLAI-LCPNLEVIDLSHCLGITEEGIGEILKSCCEIKCLEIKRCRAVFDLG-IDLELPKLEVLQASGSALN 482 (577)
Q Consensus 405 ~~l~~~~l~~l~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~-~~~~~~~L~~L~l~~~~i~ 482 (577)
. +.......+.. .+++|+.|++++| .++.. +...+..+++|+.|++++|....... ....+++|+.|++++|.++
T Consensus 379 ~-l~~~~~~~~~~~~~~~L~~L~L~~n-~l~~~-~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~ 455 (768)
T 3rgz_A 379 N-FSGPILPNLCQNPKNTLQELYLQNN-GFTGK-IPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLE 455 (768)
T ss_dssp E-EEEECCTTTTCSTTCCCCEEECCSS-EEEEE-CCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCC
T ss_pred C-cCCCcChhhhhcccCCccEEECCCC-ccccc-cCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCccc
Confidence 5 32211111211 2578999999987 34322 22236788999999999997332222 3457899999999999887
Q ss_pred HHHHHHHHHhCCCccEEecCCCCCCChhhHHHHHhhCCCCcEEEecCCCCCcHHHHHHHHHhCCCCceeccCCCC
Q 046157 483 DHALKMIANTCSRILHLDLDNCLNVTTSGVKEVVEHCRTLREINLRWCDEVNVDIVAWMVFSRPSLRKIIPPCGF 557 (577)
Q Consensus 483 ~~~~~~l~~~~~~L~~L~l~~c~~l~~~~l~~~~~~~~~L~~L~l~~c~~~~~~~~~~~~~~~~~L~~l~~~~~~ 557 (577)
......+ ..+++|+.|++++|. ++... ...+..+++|++|++++|.... .+...+..+++|+.|+++.+.
T Consensus 456 ~~~p~~~-~~l~~L~~L~L~~N~-l~~~~-p~~l~~l~~L~~L~L~~N~l~~--~~p~~~~~l~~L~~L~L~~N~ 525 (768)
T 3rgz_A 456 GEIPQEL-MYVKTLETLILDFND-LTGEI-PSGLSNCTNLNWISLSNNRLTG--EIPKWIGRLENLAILKLSNNS 525 (768)
T ss_dssp SCCCGGG-GGCTTCCEEECCSSC-CCSCC-CGGGGGCTTCCEEECCSSCCCS--CCCGGGGGCTTCCEEECCSSC
T ss_pred CcCCHHH-cCCCCceEEEecCCc-ccCcC-CHHHhcCCCCCEEEccCCccCC--cCChHHhcCCCCCEEECCCCc
Confidence 5433333 257899999999975 54322 2234789999999999985432 122234578999999998653
No 11
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.88 E-value=4.1e-24 Score=221.97 Aligned_cols=271 Identities=13% Similarity=0.065 Sum_probs=168.8
Q ss_pred hhhhcCCCEEEcCCCCCChHHHHHHHhcCCCCcEEEecCCCCCCHHHHHHHHhcCCCcCeeecccccccChHHHHHHHhc
Q 046157 262 FAYARGLCEIDLSNSFISDELLRLLGEACLPLKKLVLSHCYNFTLAGISFLLSKYQSLEHLNLEAANFLEDESMIDLSKF 341 (577)
Q Consensus 262 ~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~ 341 (577)
+..+++|+.|++.++.+.... ....+++|++|++.+|.... +..+ .+++|++|+++++..+... . ...
T Consensus 281 ~~~l~~L~~L~l~~~~~~~l~---~l~~~~~L~~L~l~~n~l~~---lp~~--~l~~L~~L~l~~n~~~~~~---~-~~~ 348 (606)
T 3vq2_A 281 FHCLANVSAMSLAGVSIKYLE---DVPKHFKWQSLSIIRCQLKQ---FPTL--DLPFLKSLTLTMNKGSISF---K-KVA 348 (606)
T ss_dssp CGGGTTCSEEEEESCCCCCCC---CCCTTCCCSEEEEESCCCSS---CCCC--CCSSCCEEEEESCSSCEEC---C-CCC
T ss_pred cccCCCCCEEEecCccchhhh---hccccccCCEEEcccccCcc---cccC--CCCccceeeccCCcCccch---h-hcc
Confidence 566788888888887654322 12236788888888876522 2222 6788888888887533322 1 124
Q ss_pred CCCCCEEeecCCCCCChHH-HHHHHhhCCCCCeEEeeeccCCCCcccccccCCCCccEEEcCCCCCCCHHHHHHHHhhCC
Q 046157 342 LTSLNFIDLGFCAKLTNST-FFTILRECPLLSEIKMETTNLGLDDFTTPLVINPQVKSLHLARNGNLSDESLKKLAILCP 420 (577)
Q Consensus 342 ~~~L~~L~l~~~~~~~~~~-l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~ 420 (577)
+++|++|+++++. ++... .......+++|++|++++|.+... ...+..+++|+.|++++|. +...........++
T Consensus 349 l~~L~~L~ls~n~-l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~--~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~l~ 424 (606)
T 3vq2_A 349 LPSLSYLDLSRNA-LSFSGCCSYSDLGTNSLRHLDLSFNGAIIM--SANFMGLEELQHLDFQHST-LKRVTEFSAFLSLE 424 (606)
T ss_dssp CTTCCEEECCSSC-EEEEEECCHHHHCCSCCCEEECCSCSEEEE--CCCCTTCTTCCEEECTTSE-EESTTTTTTTTTCT
T ss_pred CCCCCEEECcCCc-cCCCcchhhhhccCCcccEeECCCCccccc--hhhccCCCCCCeeECCCCc-cCCccChhhhhccc
Confidence 6788888888764 22110 112234688888888888775432 3566778888888888875 32221111223578
Q ss_pred CccEEecCCCCCCCHHHHHHHHhhCCCCcEEEccccccccc--ccccccCCCceEEEccCCCCCHHHHHHHHHhCCCccE
Q 046157 421 NLEVIDLSHCLGITEEGIGEILKSCCEIKCLEIKRCRAVFD--LGIDLELPKLEVLQASGSALNDHALKMIANTCSRILH 498 (577)
Q Consensus 421 ~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~--~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~ 498 (577)
+|+.|++++|. ++... ...+..+++|+.|++++|..... ......+++|++|++++|.++......+ ..+++|+.
T Consensus 425 ~L~~L~l~~n~-l~~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~-~~l~~L~~ 501 (606)
T 3vq2_A 425 KLLYLDISYTN-TKIDF-DGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVF-DTLHRLQL 501 (606)
T ss_dssp TCCEEECTTSC-CEECC-TTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTT-TTCTTCCE
T ss_pred cCCEEECcCCC-CCccc-hhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhh-cccccCCE
Confidence 88888888873 33211 22356778888888888873321 2234577888888888887765432222 25688888
Q ss_pred EecCCCCCCChhhHHHHHhhCCCCcEEEecCCCCCcHHHHHHHHHhCC-CCceeccCCC
Q 046157 499 LDLDNCLNVTTSGVKEVVEHCRTLREINLRWCDEVNVDIVAWMVFSRP-SLRKIIPPCG 556 (577)
Q Consensus 499 L~l~~c~~l~~~~l~~~~~~~~~L~~L~l~~c~~~~~~~~~~~~~~~~-~L~~l~~~~~ 556 (577)
|++++|. ++.... ..+..+++|+.|++++|. ++. +......+| +|+.|++.++
T Consensus 502 L~Ls~N~-l~~~~~-~~~~~l~~L~~L~l~~N~-l~~--~p~~~~~l~~~L~~l~l~~N 555 (606)
T 3vq2_A 502 LNMSHNN-LLFLDS-SHYNQLYSLSTLDCSFNR-IET--SKGILQHFPKSLAFFNLTNN 555 (606)
T ss_dssp EECCSSC-CSCEEG-GGTTTCTTCCEEECTTSC-CCC--EESCGGGSCTTCCEEECCSC
T ss_pred EECCCCc-CCCcCH-HHccCCCcCCEEECCCCc-Ccc--cCHhHhhhcccCcEEEccCC
Confidence 8888874 554322 223667888888888885 331 222244566 4888888763
No 12
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.88 E-value=3.3e-24 Score=222.73 Aligned_cols=450 Identities=19% Similarity=0.186 Sum_probs=272.3
Q ss_pred HHHHhhcccCceecccCccCCchhHHHHHhhcCCCccEEeccCCCCcChhhHHHHHHcCCCCCeeecCCCccccchhHHH
Q 046157 58 PQLFNRFQNLKKIDLSEFQGDPNSILYLISRSGLDLESLNISNLKSFPFMGLKELGTKMKNLKELNCSKNFSFRDSDLIA 137 (577)
Q Consensus 58 ~~~~~~~~~l~~l~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~l~~ 137 (577)
+..+..+++|++|++++..-.. .........++|++|+++++.. ... .......+++|++|+++++. +......
T Consensus 50 ~~~~~~l~~L~~L~Ls~n~i~~--~~~~~~~~l~~L~~L~Ls~n~l-~~~-~~~~~~~l~~L~~L~L~~n~-i~~l~~~- 123 (606)
T 3t6q_A 50 NTTFSRLINLTFLDLTRCQIYW--IHEDTFQSQHRLDTLVLTANPL-IFM-AETALSGPKALKHLFFIQTG-ISSIDFI- 123 (606)
T ss_dssp TTTSTTCTTCSEEECTTCCCCE--ECTTTTTTCTTCCEEECTTCCC-SEE-CTTTTSSCTTCCEEECTTSC-CSCGGGS-
T ss_pred hhHhccCccceEEECCCCccce--eChhhccCccccCeeeCCCCcc-ccc-ChhhhcccccccEeeccccC-cccCCcc-
Confidence 4556778888888888764211 0001112356788888887642 111 01112356788888887762 2211000
Q ss_pred HHhhcCCCcEeeccCCCCCCCCCC--cCccccccccc---ccCHHHHHHHHHcCccCc--EEeccCCcccChhH---H--
Q 046157 138 VAETCEFLEVLDISYPENDSSFLP--QGFQNIQSFSF---YITDSGIEALSMKLKRLK--RINLSGNFFITDKS---L-- 205 (577)
Q Consensus 138 ~~~~~~~L~~L~l~~~~~~~~~~~--~~~~~~~~~~~---~l~~~~~~~l~~~~~~L~--~L~l~~~~~~~~~~---~-- 205 (577)
....+++|++|++++|.+.....+ .+..+++...+ .++......+. .+++|+ .|+++++. +.... +
T Consensus 124 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~l~L~l~~n~-l~~~~~~~~~~ 201 (606)
T 3t6q_A 124 PLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMS-SLQQATNLSLNLNGND-IAGIEPGAFDS 201 (606)
T ss_dssp CCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHH-TTTTCCSEEEECTTCC-CCEECTTTTTT
T ss_pred hhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhh-hhcccceeEEecCCCc-cCccChhHhhh
Confidence 123567788888888775432111 11222222111 12221122222 456666 56666542 11100 0
Q ss_pred --------------HHHHhcC-------------------------------CCCcEEEeccCCCCCHHHHHHHHhcCCC
Q 046157 206 --------------MFLSSNL-------------------------------VLLREILIRDCDFITQSGISFAMRNSPN 240 (577)
Q Consensus 206 --------------~~l~~~~-------------------------------~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 240 (577)
......+ .+|++|++.++...... ...+..+++
T Consensus 202 ~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~--~~~~~~l~~ 279 (606)
T 3t6q_A 202 AVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNIS--SNTFHCFSG 279 (606)
T ss_dssp CEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCC--TTTTTTCTT
T ss_pred ccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCccC--HHHhccccC
Confidence 0000000 14555555554321110 122456799
Q ss_pred ccEEEecCCCCCCcchhHHHHhhhhcCCCEEEcCCCCCChHHHHHHHhcCCCCcEEEecCCCCCCHHHHHHHHhcCCCcC
Q 046157 241 LVSISVNGIGIPTIDSCFKESFAYARGLCEIDLSNSFISDELLRLLGEACLPLKKLVLSHCYNFTLAGISFLLSKYQSLE 320 (577)
Q Consensus 241 L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~ 320 (577)
|++|++.++.+..+ +..+..+++|++|+++++.+....... ...+++|++|+++++........ ..+..+++|+
T Consensus 280 L~~L~l~~n~l~~l----p~~l~~l~~L~~L~l~~n~l~~~~~~~-~~~l~~L~~L~l~~n~~~~~~~~-~~~~~l~~L~ 353 (606)
T 3t6q_A 280 LQELDLTATHLSEL----PSGLVGLSTLKKLVLSANKFENLCQIS-ASNFPSLTHLSIKGNTKRLELGT-GCLENLENLR 353 (606)
T ss_dssp CSEEECTTSCCSCC----CSSCCSCTTCCEEECTTCCCSBGGGGC-GGGCTTCSEEECCSCSSCCBCCS-STTTTCTTCC
T ss_pred CCEEeccCCccCCC----ChhhcccccCCEEECccCCcCcCchhh-hhccCcCCEEECCCCCcccccch-hhhhccCcCC
Confidence 99999999887543 334678899999999999877543322 33489999999999754311110 1145689999
Q ss_pred eeecccccccChHH-HHHHHhcCCCCCEEeecCCCCCChHHHHHHHhhCCCCCeEEeeeccCCCCcccccccCCCCccEE
Q 046157 321 HLNLEAANFLEDES-MIDLSKFLTSLNFIDLGFCAKLTNSTFFTILRECPLLSEIKMETTNLGLDDFTTPLVINPQVKSL 399 (577)
Q Consensus 321 ~L~l~~~~~~~~~~-~~~l~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L 399 (577)
+|+++++. +.... .......+++|++|+++++. +.... ......+++|++|++++|.+........+..+++|+.|
T Consensus 354 ~L~l~~n~-l~~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L 430 (606)
T 3t6q_A 354 ELDLSHDD-IETSDCCNLQLRNLSHLQSLNLSYNE-PLSLK-TEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVL 430 (606)
T ss_dssp EEECCSSC-CCEEEESTTTTTTCTTCCEEECCSCS-CEEEC-TTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEE
T ss_pred EEECCCCc-cccccCcchhcccCCCCCEEECCCCc-CCcCC-HHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEE
Confidence 99999987 33322 01122347899999999865 22111 11234689999999999887655434457889999999
Q ss_pred EcCCCCCCCHHHHHHHHhhCCCccEEecCCCCCCCHHHH--HHHHhhCCCCcEEEccccccccccc--ccccCCCceEEE
Q 046157 400 HLARNGNLSDESLKKLAILCPNLEVIDLSHCLGITEEGI--GEILKSCCEIKCLEIKRCRAVFDLG--IDLELPKLEVLQ 475 (577)
Q Consensus 400 ~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~--~~~~~~~~~L~~L~l~~~~~l~~~~--~~~~~~~L~~L~ 475 (577)
++++|. +...... ....+++|++|++++| .+++..+ ...+..+++|+.|++++|. ++... ....+++|+.|+
T Consensus 431 ~l~~n~-l~~~~~~-~~~~l~~L~~L~L~~n-~l~~~~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~ 506 (606)
T 3t6q_A 431 NLSHSL-LDISSEQ-LFDGLPALQHLNLQGN-HFPKGNIQKTNSLQTLGRLEILVLSFCD-LSSIDQHAFTSLKMMNHVD 506 (606)
T ss_dssp ECTTCC-CBTTCTT-TTTTCTTCCEEECTTC-BCGGGEECSSCGGGGCTTCCEEECTTSC-CCEECTTTTTTCTTCCEEE
T ss_pred ECCCCc-cCCcCHH-HHhCCCCCCEEECCCC-CCCccccccchhhccCCCccEEECCCCc-cCccChhhhccccCCCEEE
Confidence 999986 4332222 2345799999999998 4543211 1236789999999999997 44432 345789999999
Q ss_pred ccCCCCCHHHHHHHHHhCCCccEEecCCCCCCChhhHHHHHhhCCCCcEEEecCCCCCc
Q 046157 476 ASGSALNDHALKMIANTCSRILHLDLDNCLNVTTSGVKEVVEHCRTLREINLRWCDEVN 534 (577)
Q Consensus 476 l~~~~i~~~~~~~l~~~~~~L~~L~l~~c~~l~~~~l~~~~~~~~~L~~L~l~~c~~~~ 534 (577)
+++|.++......+. .+++| .|++++|. ++... ...+..+++|+.|+++++|...
T Consensus 507 Ls~N~l~~~~~~~l~-~l~~L-~L~L~~N~-l~~~~-~~~~~~l~~L~~L~l~~N~~~c 561 (606)
T 3t6q_A 507 LSHNRLTSSSIEALS-HLKGI-YLNLASNH-ISIIL-PSLLPILSQQRTINLRQNPLDC 561 (606)
T ss_dssp CCSSCCCGGGGGGGT-TCCSC-EEECCSSC-CCCCC-GGGHHHHHTSSEEECTTCCEEC
T ss_pred CCCCccCcCChhHhC-ccccc-EEECcCCc-ccccC-HhhcccCCCCCEEeCCCCCccc
Confidence 999999876554443 57889 99999974 65432 2334678999999999987654
No 13
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.88 E-value=2.9e-21 Score=185.68 Aligned_cols=302 Identities=16% Similarity=0.170 Sum_probs=150.1
Q ss_pred cCccCcEEeccCCcccChhHHHHHHhcCCCCcEEEeccCCCCCHHHHHHHHhcCCCccEEEecCCCCCCcchhHHHHhhh
Q 046157 185 KLKRLKRINLSGNFFITDKSLMFLSSNLVLLREILIRDCDFITQSGISFAMRNSPNLVSISVNGIGIPTIDSCFKESFAY 264 (577)
Q Consensus 185 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 264 (577)
.+++|++|+++++...... . ...+++|++|+++++....... +..+++|++|++.++.+..+ ..+..
T Consensus 42 ~l~~L~~L~l~~~~i~~~~---~-~~~~~~L~~L~l~~n~i~~~~~----~~~l~~L~~L~L~~n~i~~~-----~~~~~ 108 (347)
T 4fmz_A 42 ELESITKLVVAGEKVASIQ---G-IEYLTNLEYLNLNGNQITDISP----LSNLVKLTNLYIGTNKITDI-----SALQN 108 (347)
T ss_dssp HHTTCSEEECCSSCCCCCT---T-GGGCTTCCEEECCSSCCCCCGG----GTTCTTCCEEECCSSCCCCC-----GGGTT
T ss_pred hcccccEEEEeCCccccch---h-hhhcCCccEEEccCCccccchh----hhcCCcCCEEEccCCcccCc-----hHHcC
Confidence 4567888888875322212 1 3457888888888764322211 56677888888887765443 23667
Q ss_pred hcCCCEEEcCCCCCChHHHHHHHhcCCCCcEEEecCCCCCCHHHHHHHHhcCCCcCeeecccccccChHHHHHHHhcCCC
Q 046157 265 ARGLCEIDLSNSFISDELLRLLGEACLPLKKLVLSHCYNFTLAGISFLLSKYQSLEHLNLEAANFLEDESMIDLSKFLTS 344 (577)
Q Consensus 265 ~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~ 344 (577)
+++|++|+++++.+.+... ...+++|+.|+++++........ +..+++|++|+++++.. .+... ...+++
T Consensus 109 l~~L~~L~l~~n~i~~~~~---~~~l~~L~~L~l~~n~~~~~~~~---~~~l~~L~~L~l~~~~~-~~~~~---~~~l~~ 178 (347)
T 4fmz_A 109 LTNLRELYLNEDNISDISP---LANLTKMYSLNLGANHNLSDLSP---LSNMTGLNYLTVTESKV-KDVTP---IANLTD 178 (347)
T ss_dssp CTTCSEEECTTSCCCCCGG---GTTCTTCCEEECTTCTTCCCCGG---GTTCTTCCEEECCSSCC-CCCGG---GGGCTT
T ss_pred CCcCCEEECcCCcccCchh---hccCCceeEEECCCCCCcccccc---hhhCCCCcEEEecCCCc-CCchh---hccCCC
Confidence 7778888877776554221 33466777777776644332111 34556666666666652 22111 223566
Q ss_pred CCEEeecCCCCCChHHHHHHHhhCCCCCeEEeeeccCCCCcccccccCCCCccEEEcCCCCCCCHHHHHHHHhhCCCccE
Q 046157 345 LNFIDLGFCAKLTNSTFFTILRECPLLSEIKMETTNLGLDDFTTPLVINPQVKSLHLARNGNLSDESLKKLAILCPNLEV 424 (577)
Q Consensus 345 L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~ 424 (577)
|+.|+++++. +..... ...+++|+.|++.++.+.... .+..+++|+.|++++|. +++... ...+++|++
T Consensus 179 L~~L~l~~n~-l~~~~~---~~~l~~L~~L~l~~n~l~~~~---~~~~~~~L~~L~l~~n~-l~~~~~---~~~l~~L~~ 247 (347)
T 4fmz_A 179 LYSLSLNYNQ-IEDISP---LASLTSLHYFTAYVNQITDIT---PVANMTRLNSLKIGNNK-ITDLSP---LANLSQLTW 247 (347)
T ss_dssp CSEEECTTSC-CCCCGG---GGGCTTCCEEECCSSCCCCCG---GGGGCTTCCEEECCSSC-CCCCGG---GTTCTTCCE
T ss_pred CCEEEccCCc-cccccc---ccCCCccceeecccCCCCCCc---hhhcCCcCCEEEccCCc-cCCCcc---hhcCCCCCE
Confidence 6666666543 111110 234555666666555443321 14445555555555544 222111 223455555
Q ss_pred EecCCCCCCCHHHHHHHHhhCCCCcEEEcccccccccccccccCCCceEEEccCCCCCHHHHHHHHHhCCCccEEecCCC
Q 046157 425 IDLSHCLGITEEGIGEILKSCCEIKCLEIKRCRAVFDLGIDLELPKLEVLQASGSALNDHALKMIANTCSRILHLDLDNC 504 (577)
Q Consensus 425 L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~c 504 (577)
|++++| .++.. ..+..+++|+.|++++|. ++.......+++|+.|++++|.+++.....+. .+++|+.|++++|
T Consensus 248 L~l~~n-~l~~~---~~~~~l~~L~~L~l~~n~-l~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~-~l~~L~~L~L~~n 321 (347)
T 4fmz_A 248 LEIGTN-QISDI---NAVKDLTKLKMLNVGSNQ-ISDISVLNNLSQLNSLFLNNNQLGNEDMEVIG-GLTNLTTLFLSQN 321 (347)
T ss_dssp EECCSS-CCCCC---GGGTTCTTCCEEECCSSC-CCCCGGGGGCTTCSEEECCSSCCCGGGHHHHH-TCTTCSEEECCSS
T ss_pred EECCCC-ccCCC---hhHhcCCCcCEEEccCCc-cCCChhhcCCCCCCEEECcCCcCCCcChhHhh-ccccCCEEEccCC
Confidence 555554 23221 113344555555555553 33333333444455555555444443333222 2444555555444
Q ss_pred CCCChhhHHHHHhhCCCCcEEEecCC
Q 046157 505 LNVTTSGVKEVVEHCRTLREINLRWC 530 (577)
Q Consensus 505 ~~l~~~~l~~~~~~~~~L~~L~l~~c 530 (577)
+ ++.... ...+++|++|++++|
T Consensus 322 ~-l~~~~~---~~~l~~L~~L~l~~N 343 (347)
T 4fmz_A 322 H-ITDIRP---LASLSKMDSADFANQ 343 (347)
T ss_dssp S-CCCCGG---GGGCTTCSEESSSCC
T ss_pred c-cccccC---hhhhhccceeehhhh
Confidence 3 322111 234444444444444
No 14
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.88 E-value=4.1e-23 Score=211.90 Aligned_cols=462 Identities=12% Similarity=0.088 Sum_probs=232.2
Q ss_pred ccCceecccCccCCchhHHHHHhhcCCCccEEeccCCCCcChhhHHHHHHcCCCCCeeecCCCccccchhHHHHHhhcCC
Q 046157 65 QNLKKIDLSEFQGDPNSILYLISRSGLDLESLNISNLKSFPFMGLKELGTKMKNLKELNCSKNFSFRDSDLIAVAETCEF 144 (577)
Q Consensus 65 ~~l~~l~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~ 144 (577)
+++++|++++..-.... .......++|++|+++++. +..... .....+++|++|+++++ .+.... ......+++
T Consensus 26 ~~L~~L~Ls~n~l~~~~--~~~~~~l~~L~~L~Ls~n~-i~~~~~-~~~~~l~~L~~L~Ls~n-~l~~~~-~~~~~~l~~ 99 (549)
T 2z81_A 26 AAMKSLDLSFNKITYIG--HGDLRACANLQVLILKSSR-INTIEG-DAFYSLGSLEHLDLSDN-HLSSLS-SSWFGPLSS 99 (549)
T ss_dssp TTCCEEECCSSCCCEEC--SSTTSSCTTCCEEECTTSC-CCEECT-TTTTTCTTCCEEECTTS-CCCSCC-HHHHTTCTT
T ss_pred CCccEEECcCCccCccC--hhhhhcCCcccEEECCCCC-cCccCh-hhccccccCCEEECCCC-ccCccC-HHHhccCCC
Confidence 56777777665421100 0011224567777777653 221110 11234667777777766 222211 122345677
Q ss_pred CcEeeccCCCCCCCCCCcCccc---cccccc----ccCHHHHHHHHHcCccCcEEeccCCcccChhHHHHHHhcCCCCcE
Q 046157 145 LEVLDISYPENDSSFLPQGFQN---IQSFSF----YITDSGIEALSMKLKRLKRINLSGNFFITDKSLMFLSSNLVLLRE 217 (577)
Q Consensus 145 L~~L~l~~~~~~~~~~~~~~~~---~~~~~~----~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~ 217 (577)
|++|++++|.+.....+..+.+ ++.... .++......+ ..+++|++|+++++. ++.... .....+++|++
T Consensus 100 L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~-~~l~~L~~L~L~~n~-l~~~~~-~~l~~l~~L~~ 176 (549)
T 2z81_A 100 LKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDF-AGLTSLNELEIKALS-LRNYQS-QSLKSIRDIHH 176 (549)
T ss_dssp CCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTT-TTCCEEEEEEEEETT-CCEECT-TTTTTCSEEEE
T ss_pred CcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhh-hcccccCeeeccCCc-ccccCh-hhhhccccCce
Confidence 7777777776321111111111 110000 0000000011 134555555555432 211111 11123455556
Q ss_pred EEeccCCCCCHHHHHHHHhcCCCccEEEecCCCCCCcchhHHHHhhhhcCCCEEEcCCCCCChHHHHHHHh---cCCCCc
Q 046157 218 ILIRDCDFITQSGISFAMRNSPNLVSISVNGIGIPTIDSCFKESFAYARGLCEIDLSNSFISDELLRLLGE---ACLPLK 294 (577)
Q Consensus 218 L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~l~~l~~---~~~~L~ 294 (577)
|++..+...... ......+++|+.|++.++.+.............+++|+.|++.++.+.+.....+.. .+++|+
T Consensus 177 L~l~~n~~~~~~--~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~ 254 (549)
T 2z81_A 177 LTLHLSESAFLL--EIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELS 254 (549)
T ss_dssp EEEECSBSTTHH--HHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCC
T ss_pred EecccCcccccc--hhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhcccc
Confidence 665554321111 122344566666666665543221000011123456666666666666555544432 356677
Q ss_pred EEEecCCCCCCHHHH----HHHHhcCCCcCeeecccccccChH----HHHHHHhcCCCCCEEeecCCCCCChHHHHHHHh
Q 046157 295 KLVLSHCYNFTLAGI----SFLLSKYQSLEHLNLEAANFLEDE----SMIDLSKFLTSLNFIDLGFCAKLTNSTFFTILR 366 (577)
Q Consensus 295 ~L~l~~~~~~~~~~l----~~~~~~~~~L~~L~l~~~~~~~~~----~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~l~~ 366 (577)
.+++.+|.......+ ...+..+++|+.|.+.++. +... .+..+....++|+.|+++++. +.... ..+..
T Consensus 255 ~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~-i~~~~~~~~l~~~~~~~~~L~~L~l~~n~-l~~ip-~~~~~ 331 (549)
T 2z81_A 255 EVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLH-IPQFYLFYDLSTVYSLLEKVKRITVENSK-VFLVP-CSFSQ 331 (549)
T ss_dssp EEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCB-CSCGGGSCCCCHHHHHSTTCCEEEEESSC-CCCCC-HHHHH
T ss_pred ccccccccccccccccccchhhhhhhcccccccccccc-cchhhhcccchhhhhhcccceEEEeccCc-cccCC-HHHHh
Confidence 777666542110000 0012334566666666554 2111 111122335678888887754 22111 12234
Q ss_pred hCCCCCeEEeeeccCCCCcc--cccccCCCCccEEEcCCCCCCCHHH-HHHHHhhCCCccEEecCCCCCCCHHHHHHHHh
Q 046157 367 ECPLLSEIKMETTNLGLDDF--TTPLVINPQVKSLHLARNGNLSDES-LKKLAILCPNLEVIDLSHCLGITEEGIGEILK 443 (577)
Q Consensus 367 ~~~~L~~L~l~~~~~~~~~~--~~~~~~~~~L~~L~l~~~~~l~~~~-l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~ 443 (577)
.+++|+.|++++|.+..... ...+..+++|+.|++++|. ++... .......+++|++|++++| .++. +...+.
T Consensus 332 ~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~--lp~~~~ 407 (549)
T 2z81_A 332 HLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNH-LRSMQKTGEILLTLKNLTSLDISRN-TFHP--MPDSCQ 407 (549)
T ss_dssp HCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSC-CCCHHHHHHHGGGCTTCCEEECTTC-CCCC--CCSCCC
T ss_pred cCccccEEEccCCccccccccchhhhhccccCcEEEccCCc-ccccccchhhhhcCCCCCEEECCCC-CCcc--CChhhc
Confidence 67888888888887654211 2235677888888888876 44332 2233456788888888887 4442 222244
Q ss_pred hCCCCcEEEcccccccccccccccCCCceEEEccCCCCCHHHHHHHHHhCCCccEEecCCCCCCChhhHHHHHhhCCCCc
Q 046157 444 SCCEIKCLEIKRCRAVFDLGIDLELPKLEVLQASGSALNDHALKMIANTCSRILHLDLDNCLNVTTSGVKEVVEHCRTLR 523 (577)
Q Consensus 444 ~~~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~c~~l~~~~l~~~~~~~~~L~ 523 (577)
.+++|+.|++++|. ++..... ..++|++|++++|.++... ..+++|+.|++++|. ++. +.. ...+++|+
T Consensus 408 ~~~~L~~L~Ls~N~-l~~l~~~-~~~~L~~L~Ls~N~l~~~~-----~~l~~L~~L~Ls~N~-l~~--ip~-~~~l~~L~ 476 (549)
T 2z81_A 408 WPEKMRFLNLSSTG-IRVVKTC-IPQTLEVLDVSNNNLDSFS-----LFLPRLQELYISRNK-LKT--LPD-ASLFPVLL 476 (549)
T ss_dssp CCTTCCEEECTTSC-CSCCCTT-SCTTCSEEECCSSCCSCCC-----CCCTTCCEEECCSSC-CSS--CCC-GGGCTTCC
T ss_pred ccccccEEECCCCC-cccccch-hcCCceEEECCCCChhhhc-----ccCChhcEEECCCCc-cCc--CCC-cccCccCC
Confidence 56788888888877 4332211 1357888888888776521 356788888888864 552 222 24578888
Q ss_pred EEEecCCCCCcHHHHHHHHHhCCCCceeccCCCC
Q 046157 524 EINLRWCDEVNVDIVAWMVFSRPSLRKIIPPCGF 557 (577)
Q Consensus 524 ~L~l~~c~~~~~~~~~~~~~~~~~L~~l~~~~~~ 557 (577)
.|++++|. ++. ........+++|+.|+++++.
T Consensus 477 ~L~Ls~N~-l~~-~~~~~~~~l~~L~~L~l~~N~ 508 (549)
T 2z81_A 477 VMKISRNQ-LKS-VPDGIFDRLTSLQKIWLHTNP 508 (549)
T ss_dssp EEECCSSC-CCC-CCTTGGGGCTTCCEEECCSSC
T ss_pred EEecCCCc-cCC-cCHHHHhcCcccCEEEecCCC
Confidence 88888873 331 122234568888888887643
No 15
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.88 E-value=1.5e-21 Score=195.13 Aligned_cols=339 Identities=18% Similarity=0.170 Sum_probs=152.4
Q ss_pred CccEEeccCCCCcChhhHHHHHHcCCCCCeeecCCCccccchhHHHHHhhcCCCcEeeccCCCCCCCCCCcCcccccccc
Q 046157 92 DLESLNISNLKSFPFMGLKELGTKMKNLKELNCSKNFSFRDSDLIAVAETCEFLEVLDISYPENDSSFLPQGFQNIQSFS 171 (577)
Q Consensus 92 ~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~ 171 (577)
+++.|++.++..-...+ ...+++|++|+++++.-..... ...+++|++|+++++.
T Consensus 47 ~l~~L~l~~~~i~~l~~----~~~l~~L~~L~Ls~n~l~~~~~----~~~l~~L~~L~l~~n~----------------- 101 (466)
T 1o6v_A 47 QVTTLQADRLGIKSIDG----VEYLNNLTQINFSNNQLTDITP----LKNLTKLVDILMNNNQ----------------- 101 (466)
T ss_dssp TCCEEECCSSCCCCCTT----GGGCTTCCEEECCSSCCCCCGG----GTTCTTCCEEECCSSC-----------------
T ss_pred cccEEecCCCCCccCcc----hhhhcCCCEEECCCCccCCchh----hhccccCCEEECCCCc-----------------
Confidence 56777776554211111 2346677777776652211111 3356667777776665
Q ss_pred cccCHHHHHHHHHcCccCcEEeccCCcccChhHHHHHHhcCCCCcEEEeccCCCCCHHHHHHHHhcCCCccEEEecCCCC
Q 046157 172 FYITDSGIEALSMKLKRLKRINLSGNFFITDKSLMFLSSNLVLLREILIRDCDFITQSGISFAMRNSPNLVSISVNGIGI 251 (577)
Q Consensus 172 ~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 251 (577)
+.... . ...+++|++|+++++. ++... . ...+++|++|+++++...... .+..+++|+.|++.+. .
T Consensus 102 --l~~~~--~-~~~l~~L~~L~L~~n~-l~~~~--~-~~~l~~L~~L~l~~n~l~~~~----~~~~l~~L~~L~l~~~-~ 167 (466)
T 1o6v_A 102 --IADIT--P-LANLTNLTGLTLFNNQ-ITDID--P-LKNLTNLNRLELSSNTISDIS----ALSGLTSLQQLSFGNQ-V 167 (466)
T ss_dssp --CCCCG--G-GTTCTTCCEEECCSSC-CCCCG--G-GTTCTTCSEEEEEEEEECCCG----GGTTCTTCSEEEEEES-C
T ss_pred --cccCh--h-hcCCCCCCEEECCCCC-CCCCh--H-HcCCCCCCEEECCCCccCCCh----hhccCCcccEeecCCc-c
Confidence 22211 1 2256667777776642 22211 1 344666666666655322211 1345566666666432 1
Q ss_pred CCcchhHHHHhhhhcCCCEEEcCCCCCChHHHHHHHhcCCCCcEEEecCCCCCCHHHHHHHHhcCCCcCeeecccccccC
Q 046157 252 PTIDSCFKESFAYARGLCEIDLSNSFISDELLRLLGEACLPLKKLVLSHCYNFTLAGISFLLSKYQSLEHLNLEAANFLE 331 (577)
Q Consensus 252 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~ 331 (577)
... ..+..+++|++|+++++.+.... . ...+++|++|+++++....... ...+++|+.|+++++. +.
T Consensus 168 ~~~-----~~~~~l~~L~~L~l~~n~l~~~~--~-l~~l~~L~~L~l~~n~l~~~~~----~~~l~~L~~L~l~~n~-l~ 234 (466)
T 1o6v_A 168 TDL-----KPLANLTTLERLDISSNKVSDIS--V-LAKLTNLESLIATNNQISDITP----LGILTNLDELSLNGNQ-LK 234 (466)
T ss_dssp CCC-----GGGTTCTTCCEEECCSSCCCCCG--G-GGGCTTCSEEECCSSCCCCCGG----GGGCTTCCEEECCSSC-CC
T ss_pred cCc-----hhhccCCCCCEEECcCCcCCCCh--h-hccCCCCCEEEecCCccccccc----ccccCCCCEEECCCCC-cc
Confidence 111 11455566666666665544321 1 2224555555555543222111 2234445555554443 22
Q ss_pred hHHHHHHHhcCCCCCEEeecCCCCCChHHHHHHHhhCCCCCeEEeeeccCCCCcccccccCCCCccEEEcCCCCCCCHHH
Q 046157 332 DESMIDLSKFLTSLNFIDLGFCAKLTNSTFFTILRECPLLSEIKMETTNLGLDDFTTPLVINPQVKSLHLARNGNLSDES 411 (577)
Q Consensus 332 ~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~ 411 (577)
+. .. ...+++|+.|++++|.+.... .+..+++|+.|++++|. +....
T Consensus 235 ~~--~~---------------------------l~~l~~L~~L~l~~n~l~~~~---~~~~l~~L~~L~l~~n~-l~~~~ 281 (466)
T 1o6v_A 235 DI--GT---------------------------LASLTNLTDLDLANNQISNLA---PLSGLTKLTELKLGANQ-ISNIS 281 (466)
T ss_dssp CC--GG---------------------------GGGCTTCSEEECCSSCCCCCG---GGTTCTTCSEEECCSSC-CCCCG
T ss_pred cc--hh---------------------------hhcCCCCCEEECCCCccccch---hhhcCCCCCEEECCCCc-cCccc
Confidence 11 01 123444555555444433221 14444555555555443 22111
Q ss_pred HHHHHhhCCCccEEecCCCCCCCHHHHHHHHhhCCCCcEEEcccccccccccccccCCCceEEEccCCCCCHHHHHHHHH
Q 046157 412 LKKLAILCPNLEVIDLSHCLGITEEGIGEILKSCCEIKCLEIKRCRAVFDLGIDLELPKLEVLQASGSALNDHALKMIAN 491 (577)
Q Consensus 412 l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~ 491 (577)
. ...+++|+.|++++| .+++.. . +..+++|+.|++++|. +........+++|+.|++++|.+++. .. ..
T Consensus 282 ~---~~~l~~L~~L~L~~n-~l~~~~--~-~~~l~~L~~L~L~~n~-l~~~~~~~~l~~L~~L~l~~n~l~~~--~~-l~ 350 (466)
T 1o6v_A 282 P---LAGLTALTNLELNEN-QLEDIS--P-ISNLKNLTYLTLYFNN-ISDISPVSSLTKLQRLFFYNNKVSDV--SS-LA 350 (466)
T ss_dssp G---GTTCTTCSEEECCSS-CCSCCG--G-GGGCTTCSEEECCSSC-CSCCGGGGGCTTCCEEECCSSCCCCC--GG-GT
T ss_pred c---ccCCCccCeEEcCCC-cccCch--h-hcCCCCCCEEECcCCc-CCCchhhccCccCCEeECCCCccCCc--hh-hc
Confidence 0 223455555555554 222211 1 3445555555555554 22222233455555555555555442 11 12
Q ss_pred hCCCccEEecCCCCCCChhhHHHHHhhCCCCcEEEecCC
Q 046157 492 TCSRILHLDLDNCLNVTTSGVKEVVEHCRTLREINLRWC 530 (577)
Q Consensus 492 ~~~~L~~L~l~~c~~l~~~~l~~~~~~~~~L~~L~l~~c 530 (577)
.+++|+.|++++|. +++... +..+++|+.|++++|
T Consensus 351 ~l~~L~~L~l~~n~-l~~~~~---~~~l~~L~~L~l~~n 385 (466)
T 1o6v_A 351 NLTNINWLSAGHNQ-ISDLTP---LANLTRITQLGLNDQ 385 (466)
T ss_dssp TCTTCCEEECCSSC-CCBCGG---GTTCTTCCEEECCCE
T ss_pred cCCCCCEEeCCCCc-cCccch---hhcCCCCCEEeccCC
Confidence 35556666665553 333221 345566666666555
No 16
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.88 E-value=1.5e-21 Score=195.15 Aligned_cols=341 Identities=18% Similarity=0.162 Sum_probs=249.8
Q ss_pred cCCCcEeeccCCCCCCCCCCcCcccccccccccCHHHHHHHHHcCccCcEEeccCCcccChhHHHHHHhcCCCCcEEEec
Q 046157 142 CEFLEVLDISYPENDSSFLPQGFQNIQSFSFYITDSGIEALSMKLKRLKRINLSGNFFITDKSLMFLSSNLVLLREILIR 221 (577)
Q Consensus 142 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~ 221 (577)
++++++|++.++. +.. +..+ ..+++|++|+++++. ++... . ...+++|++|+++
T Consensus 45 l~~l~~L~l~~~~-------------------i~~--l~~~-~~l~~L~~L~Ls~n~-l~~~~--~-~~~l~~L~~L~l~ 98 (466)
T 1o6v_A 45 LDQVTTLQADRLG-------------------IKS--IDGV-EYLNNLTQINFSNNQ-LTDIT--P-LKNLTKLVDILMN 98 (466)
T ss_dssp HHTCCEEECCSSC-------------------CCC--CTTG-GGCTTCCEEECCSSC-CCCCG--G-GTTCTTCCEEECC
T ss_pred hccccEEecCCCC-------------------Ccc--Ccch-hhhcCCCEEECCCCc-cCCch--h-hhccccCCEEECC
Confidence 4589999998887 322 1222 368899999999864 33222 1 4678999999999
Q ss_pred cCCCCCHHHHHHHHhcCCCccEEEecCCCCCCcchhHHHHhhhhcCCCEEEcCCCCCChHHHHHHHhcCCCCcEEEecCC
Q 046157 222 DCDFITQSGISFAMRNSPNLVSISVNGIGIPTIDSCFKESFAYARGLCEIDLSNSFISDELLRLLGEACLPLKKLVLSHC 301 (577)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~ 301 (577)
++....... +..+++|++|++.++.+..... +..+++|++|+++++.+.+.. . ...+++|+.|.+.+.
T Consensus 99 ~n~l~~~~~----~~~l~~L~~L~L~~n~l~~~~~-----~~~l~~L~~L~l~~n~l~~~~--~-~~~l~~L~~L~l~~~ 166 (466)
T 1o6v_A 99 NNQIADITP----LANLTNLTGLTLFNNQITDIDP-----LKNLTNLNRLELSSNTISDIS--A-LSGLTSLQQLSFGNQ 166 (466)
T ss_dssp SSCCCCCGG----GTTCTTCCEEECCSSCCCCCGG-----GTTCTTCSEEEEEEEEECCCG--G-GTTCTTCSEEEEEES
T ss_pred CCccccChh----hcCCCCCCEEECCCCCCCCChH-----HcCCCCCCEEECCCCccCCCh--h-hccCCcccEeecCCc
Confidence 875443322 6789999999999988755432 788999999999998765521 2 345899999999753
Q ss_pred CCCCHHHHHHHHhcCCCcCeeecccccccChHHHHHHHhcCCCCCEEeecCCCCCChHHHHHHHhhCCCCCeEEeeeccC
Q 046157 302 YNFTLAGISFLLSKYQSLEHLNLEAANFLEDESMIDLSKFLTSLNFIDLGFCAKLTNSTFFTILRECPLLSEIKMETTNL 381 (577)
Q Consensus 302 ~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~ 381 (577)
.... .. +..+++|+.|+++++. +++.. . ...+++|++|+++++.-..... ...+++|++|++++|.+
T Consensus 167 ~~~~----~~-~~~l~~L~~L~l~~n~-l~~~~--~-l~~l~~L~~L~l~~n~l~~~~~----~~~l~~L~~L~l~~n~l 233 (466)
T 1o6v_A 167 VTDL----KP-LANLTTLERLDISSNK-VSDIS--V-LAKLTNLESLIATNNQISDITP----LGILTNLDELSLNGNQL 233 (466)
T ss_dssp CCCC----GG-GTTCTTCCEEECCSSC-CCCCG--G-GGGCTTCSEEECCSSCCCCCGG----GGGCTTCCEEECCSSCC
T ss_pred ccCc----hh-hccCCCCCEEECcCCc-CCCCh--h-hccCCCCCEEEecCCccccccc----ccccCCCCEEECCCCCc
Confidence 2211 11 5678999999999987 43322 2 3458999999999876222222 34689999999999987
Q ss_pred CCCcccccccCCCCccEEEcCCCCCCCHHHHHHHHhhCCCccEEecCCCCCCCHHHHHHHHhhCCCCcEEEccccccccc
Q 046157 382 GLDDFTTPLVINPQVKSLHLARNGNLSDESLKKLAILCPNLEVIDLSHCLGITEEGIGEILKSCCEIKCLEIKRCRAVFD 461 (577)
Q Consensus 382 ~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~ 461 (577)
... ..+..+++|+.|++++|. +..... ...+++|+.|++++| .++.... +..+++|+.|++++|. +..
T Consensus 234 ~~~---~~l~~l~~L~~L~l~~n~-l~~~~~---~~~l~~L~~L~l~~n-~l~~~~~---~~~l~~L~~L~L~~n~-l~~ 301 (466)
T 1o6v_A 234 KDI---GTLASLTNLTDLDLANNQ-ISNLAP---LSGLTKLTELKLGAN-QISNISP---LAGLTALTNLELNENQ-LED 301 (466)
T ss_dssp CCC---GGGGGCTTCSEEECCSSC-CCCCGG---GTTCTTCSEEECCSS-CCCCCGG---GTTCTTCSEEECCSSC-CSC
T ss_pred ccc---hhhhcCCCCCEEECCCCc-cccchh---hhcCCCCCEEECCCC-ccCcccc---ccCCCccCeEEcCCCc-ccC
Confidence 653 457789999999999987 433221 456899999999998 4543221 6789999999999997 555
Q ss_pred ccccccCCCceEEEccCCCCCHHHHHHHHHhCCCccEEecCCCCCCChhhHHHHHhhCCCCcEEEecCCCCCcHHHHHHH
Q 046157 462 LGIDLELPKLEVLQASGSALNDHALKMIANTCSRILHLDLDNCLNVTTSGVKEVVEHCRTLREINLRWCDEVNVDIVAWM 541 (577)
Q Consensus 462 ~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~c~~l~~~~l~~~~~~~~~L~~L~l~~c~~~~~~~~~~~ 541 (577)
......+++|+.|++++|.+++... ...+++|+.|++++|. ++.. . .+..+++|+.|++++|.-.... .
T Consensus 302 ~~~~~~l~~L~~L~L~~n~l~~~~~---~~~l~~L~~L~l~~n~-l~~~--~-~l~~l~~L~~L~l~~n~l~~~~--~-- 370 (466)
T 1o6v_A 302 ISPISNLKNLTYLTLYFNNISDISP---VSSLTKLQRLFFYNNK-VSDV--S-SLANLTNINWLSAGHNQISDLT--P-- 370 (466)
T ss_dssp CGGGGGCTTCSEEECCSSCCSCCGG---GGGCTTCCEEECCSSC-CCCC--G-GGTTCTTCCEEECCSSCCCBCG--G--
T ss_pred chhhcCCCCCCEEECcCCcCCCchh---hccCccCCEeECCCCc-cCCc--h-hhccCCCCCEEeCCCCccCccc--h--
Confidence 5445689999999999998876543 3468999999999984 6653 2 2478999999999999644322 1
Q ss_pred HHhCCCCceeccCCC
Q 046157 542 VFSRPSLRKIIPPCG 556 (577)
Q Consensus 542 ~~~~~~L~~l~~~~~ 556 (577)
...+++|+.|++..+
T Consensus 371 ~~~l~~L~~L~l~~n 385 (466)
T 1o6v_A 371 LANLTRITQLGLNDQ 385 (466)
T ss_dssp GTTCTTCCEEECCCE
T ss_pred hhcCCCCCEEeccCC
Confidence 568999999999864
No 17
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.88 E-value=4.4e-21 Score=184.47 Aligned_cols=303 Identities=17% Similarity=0.176 Sum_probs=229.3
Q ss_pred cCCCCcEEEeccCCCCCHHHHHHHHhcCCCccEEEecCCCCCCcchhHHHHhhhhcCCCEEEcCCCCCChHHHHHHHhcC
Q 046157 211 NLVLLREILIRDCDFITQSGISFAMRNSPNLVSISVNGIGIPTIDSCFKESFAYARGLCEIDLSNSFISDELLRLLGEAC 290 (577)
Q Consensus 211 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~l~~l~~~~ 290 (577)
.+++|++|++.++...... .+..+++|++|++.++.+..+.. +..+++|++|+++++.+.+. .. ...+
T Consensus 42 ~l~~L~~L~l~~~~i~~~~----~~~~~~~L~~L~l~~n~i~~~~~-----~~~l~~L~~L~L~~n~i~~~--~~-~~~l 109 (347)
T 4fmz_A 42 ELESITKLVVAGEKVASIQ----GIEYLTNLEYLNLNGNQITDISP-----LSNLVKLTNLYIGTNKITDI--SA-LQNL 109 (347)
T ss_dssp HHTTCSEEECCSSCCCCCT----TGGGCTTCCEEECCSSCCCCCGG-----GTTCTTCCEEECCSSCCCCC--GG-GTTC
T ss_pred hcccccEEEEeCCccccch----hhhhcCCccEEEccCCccccchh-----hhcCCcCCEEEccCCcccCc--hH-HcCC
Confidence 3789999999987543332 25679999999999998755443 78899999999999987653 22 3458
Q ss_pred CCCcEEEecCCCCCCHHHHHHHHhcCCCcCeeecccccccChHHHHHHHhcCCCCCEEeecCCCCCChHHHHHHHhhCCC
Q 046157 291 LPLKKLVLSHCYNFTLAGISFLLSKYQSLEHLNLEAANFLEDESMIDLSKFLTSLNFIDLGFCAKLTNSTFFTILRECPL 370 (577)
Q Consensus 291 ~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~ 370 (577)
++|++|+++++....... +..+++|+.|+++++........ ...+++|++|+++++.-..... ...+++
T Consensus 110 ~~L~~L~l~~n~i~~~~~----~~~l~~L~~L~l~~n~~~~~~~~---~~~l~~L~~L~l~~~~~~~~~~----~~~l~~ 178 (347)
T 4fmz_A 110 TNLRELYLNEDNISDISP----LANLTKMYSLNLGANHNLSDLSP---LSNMTGLNYLTVTESKVKDVTP----IANLTD 178 (347)
T ss_dssp TTCSEEECTTSCCCCCGG----GTTCTTCCEEECTTCTTCCCCGG---GTTCTTCCEEECCSSCCCCCGG----GGGCTT
T ss_pred CcCCEEECcCCcccCchh----hccCCceeEEECCCCCCcccccc---hhhCCCCcEEEecCCCcCCchh----hccCCC
Confidence 999999999976543222 56789999999999864443221 3458999999999876322222 457999
Q ss_pred CCeEEeeeccCCCCcccccccCCCCccEEEcCCCCCCCHHHHHHHHhhCCCccEEecCCCCCCCHHHHHHHHhhCCCCcE
Q 046157 371 LSEIKMETTNLGLDDFTTPLVINPQVKSLHLARNGNLSDESLKKLAILCPNLEVIDLSHCLGITEEGIGEILKSCCEIKC 450 (577)
Q Consensus 371 L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~ 450 (577)
|++|++++|.+... ..+..+++|+.|+++++. +.+... ...+++|++|++++| .++.... +..+++|+.
T Consensus 179 L~~L~l~~n~l~~~---~~~~~l~~L~~L~l~~n~-l~~~~~---~~~~~~L~~L~l~~n-~l~~~~~---~~~l~~L~~ 247 (347)
T 4fmz_A 179 LYSLSLNYNQIEDI---SPLASLTSLHYFTAYVNQ-ITDITP---VANMTRLNSLKIGNN-KITDLSP---LANLSQLTW 247 (347)
T ss_dssp CSEEECTTSCCCCC---GGGGGCTTCCEEECCSSC-CCCCGG---GGGCTTCCEEECCSS-CCCCCGG---GTTCTTCCE
T ss_pred CCEEEccCCccccc---ccccCCCccceeecccCC-CCCCch---hhcCCcCCEEEccCC-ccCCCcc---hhcCCCCCE
Confidence 99999999987653 337889999999999976 443222 456899999999998 4544322 678999999
Q ss_pred EEcccccccccccccccCCCceEEEccCCCCCHHHHHHHHHhCCCccEEecCCCCCCChhhHHHHHhhCCCCcEEEecCC
Q 046157 451 LEIKRCRAVFDLGIDLELPKLEVLQASGSALNDHALKMIANTCSRILHLDLDNCLNVTTSGVKEVVEHCRTLREINLRWC 530 (577)
Q Consensus 451 L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~c~~l~~~~l~~~~~~~~~L~~L~l~~c 530 (577)
|++++|. ++.......+++|+.|++++|.+++.. ....+++|+.|++++|. ++...... +..+++|+.|++++|
T Consensus 248 L~l~~n~-l~~~~~~~~l~~L~~L~l~~n~l~~~~---~~~~l~~L~~L~L~~n~-l~~~~~~~-l~~l~~L~~L~L~~n 321 (347)
T 4fmz_A 248 LEIGTNQ-ISDINAVKDLTKLKMLNVGSNQISDIS---VLNNLSQLNSLFLNNNQ-LGNEDMEV-IGGLTNLTTLFLSQN 321 (347)
T ss_dssp EECCSSC-CCCCGGGTTCTTCCEEECCSSCCCCCG---GGGGCTTCSEEECCSSC-CCGGGHHH-HHTCTTCSEEECCSS
T ss_pred EECCCCc-cCCChhHhcCCCcCEEEccCCccCCCh---hhcCCCCCCEEECcCCc-CCCcChhH-hhccccCCEEEccCC
Confidence 9999996 666665668999999999999888742 23468999999999985 77655444 478999999999999
Q ss_pred CCCcHHHHHHHHHhCCCCceeccCCCC
Q 046157 531 DEVNVDIVAWMVFSRPSLRKIIPPCGF 557 (577)
Q Consensus 531 ~~~~~~~~~~~~~~~~~L~~l~~~~~~ 557 (577)
+-..... ...+++|+.|+++++.
T Consensus 322 ~l~~~~~----~~~l~~L~~L~l~~N~ 344 (347)
T 4fmz_A 322 HITDIRP----LASLSKMDSADFANQV 344 (347)
T ss_dssp SCCCCGG----GGGCTTCSEESSSCC-
T ss_pred ccccccC----hhhhhccceeehhhhc
Confidence 7544222 5679999999998653
No 18
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.87 E-value=8.3e-24 Score=219.71 Aligned_cols=276 Identities=14% Similarity=0.121 Sum_probs=197.3
Q ss_pred HhcCCCccEEEecCCCCCCcchhHHHHhhhhcCCCEEEcCCCCCChHHHHHHHhcCCCCcEEEecCCCCCCHHHHHHHHh
Q 046157 235 MRNSPNLVSISVNGIGIPTIDSCFKESFAYARGLCEIDLSNSFISDELLRLLGEACLPLKKLVLSHCYNFTLAGISFLLS 314 (577)
Q Consensus 235 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~ 314 (577)
...+++|+.|++.++.+..+. .+..+++|++|+++++.+.. +..+ .+++|+.|++.++...... ...
T Consensus 281 ~~~l~~L~~L~l~~~~~~~l~-----~l~~~~~L~~L~l~~n~l~~--lp~~--~l~~L~~L~l~~n~~~~~~----~~~ 347 (606)
T 3vq2_A 281 FHCLANVSAMSLAGVSIKYLE-----DVPKHFKWQSLSIIRCQLKQ--FPTL--DLPFLKSLTLTMNKGSISF----KKV 347 (606)
T ss_dssp CGGGTTCSEEEEESCCCCCCC-----CCCTTCCCSEEEEESCCCSS--CCCC--CCSSCCEEEEESCSSCEEC----CCC
T ss_pred cccCCCCCEEEecCccchhhh-----hccccccCCEEEcccccCcc--cccC--CCCccceeeccCCcCccch----hhc
Confidence 456789999999988765443 56788999999999997733 2233 5899999999998544322 134
Q ss_pred cCCCcCeeecccccccChHH-HHHHHhcCCCCCEEeecCCCCCChHHHHHHHhhCCCCCeEEeeeccCCCCcccccccCC
Q 046157 315 KYQSLEHLNLEAANFLEDES-MIDLSKFLTSLNFIDLGFCAKLTNSTFFTILRECPLLSEIKMETTNLGLDDFTTPLVIN 393 (577)
Q Consensus 315 ~~~~L~~L~l~~~~~~~~~~-~~~l~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 393 (577)
.+++|++|+++++. ++... .......+++|++|+++++. +.... .....+++|+.|++.+|.+........+..+
T Consensus 348 ~l~~L~~L~ls~n~-l~~~~~~~~~~~~~~~L~~L~L~~n~-l~~~~--~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l 423 (606)
T 3vq2_A 348 ALPSLSYLDLSRNA-LSFSGCCSYSDLGTNSLRHLDLSFNG-AIIMS--ANFMGLEELQHLDFQHSTLKRVTEFSAFLSL 423 (606)
T ss_dssp CCTTCCEEECCSSC-EEEEEECCHHHHCCSCCCEEECCSCS-EEEEC--CCCTTCTTCCEEECTTSEEESTTTTTTTTTC
T ss_pred cCCCCCEEECcCCc-cCCCcchhhhhccCCcccEeECCCCc-cccch--hhccCCCCCCeeECCCCccCCccChhhhhcc
Confidence 68999999999987 33221 11223458999999999875 22211 2234689999999999887655433567889
Q ss_pred CCccEEEcCCCCCCCHHHHHHHHhhCCCccEEecCCCCCCCHHHHHHHHhhCCCCcEEEccccccccccc--ccccCCCc
Q 046157 394 PQVKSLHLARNGNLSDESLKKLAILCPNLEVIDLSHCLGITEEGIGEILKSCCEIKCLEIKRCRAVFDLG--IDLELPKL 471 (577)
Q Consensus 394 ~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~--~~~~~~~L 471 (577)
++|+.|++++|. +...... ....+++|++|++++| .+++..+...+..+++|+.|++++|. ++... ....+++|
T Consensus 424 ~~L~~L~l~~n~-l~~~~~~-~~~~l~~L~~L~l~~n-~l~~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L 499 (606)
T 3vq2_A 424 EKLLYLDISYTN-TKIDFDG-IFLGLTSLNTLKMAGN-SFKDNTLSNVFANTTNLTFLDLSKCQ-LEQISWGVFDTLHRL 499 (606)
T ss_dssp TTCCEEECTTSC-CEECCTT-TTTTCTTCCEEECTTC-EEGGGEECSCCTTCTTCCEEECTTSC-CCEECTTTTTTCTTC
T ss_pred ccCCEEECcCCC-CCccchh-hhcCCCCCCEEECCCC-cCCCcchHHhhccCCCCCEEECCCCc-CCccChhhhcccccC
Confidence 999999999987 4332111 2345799999999998 45443233346788999999999997 44332 34578999
Q ss_pred eEEEccCCCCCHHHHHHHHHhCCCccEEecCCCCCCChhhHHHHHhhCC-CCcEEEecCCCCCcH
Q 046157 472 EVLQASGSALNDHALKMIANTCSRILHLDLDNCLNVTTSGVKEVVEHCR-TLREINLRWCDEVNV 535 (577)
Q Consensus 472 ~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~c~~l~~~~l~~~~~~~~-~L~~L~l~~c~~~~~ 535 (577)
++|++++|.+++.....+ ..+++|+.|++++|. ++...-. +..++ +|+.|++++++...+
T Consensus 500 ~~L~Ls~N~l~~~~~~~~-~~l~~L~~L~l~~N~-l~~~p~~--~~~l~~~L~~l~l~~N~~~c~ 560 (606)
T 3vq2_A 500 QLLNMSHNNLLFLDSSHY-NQLYSLSTLDCSFNR-IETSKGI--LQHFPKSLAFFNLTNNSVACI 560 (606)
T ss_dssp CEEECCSSCCSCEEGGGT-TTCTTCCEEECTTSC-CCCEESC--GGGSCTTCCEEECCSCCCCCS
T ss_pred CEEECCCCcCCCcCHHHc-cCCCcCCEEECCCCc-CcccCHh--HhhhcccCcEEEccCCCcccC
Confidence 999999998876433333 357899999999985 6643222 56676 599999999876654
No 19
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.86 E-value=1.7e-22 Score=205.58 Aligned_cols=127 Identities=18% Similarity=0.106 Sum_probs=62.2
Q ss_pred ccCceecccCccCCchhHHHHHhhcCCCccEEeccCCCCcChhhHHHHHHcCCCCCeeecCCCccccchhHHHHHhhcCC
Q 046157 65 QNLKKIDLSEFQGDPNSILYLISRSGLDLESLNISNLKSFPFMGLKELGTKMKNLKELNCSKNFSFRDSDLIAVAETCEF 144 (577)
Q Consensus 65 ~~l~~l~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~ 144 (577)
++++.|++++..-... ........++|++|+++++. +.... ......+++|++|+++++. +.. +... .+++
T Consensus 21 ~~L~~L~Ls~n~i~~~--~~~~~~~l~~L~~L~Ls~n~-l~~~~-~~~~~~l~~L~~L~Ls~N~-l~~--lp~~--~l~~ 91 (520)
T 2z7x_B 21 QKTTILNISQNYISEL--WTSDILSLSKLRILIISHNR-IQYLD-ISVFKFNQELEYLDLSHNK-LVK--ISCH--PTVN 91 (520)
T ss_dssp TTCSEEECCSSCCCCC--CHHHHTTCTTCCEEECCSSC-CCEEE-GGGGTTCTTCCEEECCSSC-CCE--EECC--CCCC
T ss_pred ccccEEECCCCccccc--ChhhccccccccEEecCCCc-cCCcC-hHHhhcccCCCEEecCCCc-eee--cCcc--ccCC
Confidence 5677777766542111 00111234567777777664 22110 1122346677777776652 221 1111 4667
Q ss_pred CcEeeccCCCCCCCCCCcCcccccccccccCHHHHHHHHHcCccCcEEeccCCcccChhHHHHHHhcCCCC--cEEEecc
Q 046157 145 LEVLDISYPENDSSFLPQGFQNIQSFSFYITDSGIEALSMKLKRLKRINLSGNFFITDKSLMFLSSNLVLL--REILIRD 222 (577)
Q Consensus 145 L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L--~~L~l~~ 222 (577)
|++|++++|. ++...+......+++|++|+++++ .++... ...+++| ++|++.+
T Consensus 92 L~~L~L~~N~-------------------l~~~~~p~~~~~l~~L~~L~L~~n-~l~~~~----~~~l~~L~L~~L~l~~ 147 (520)
T 2z7x_B 92 LKHLDLSFNA-------------------FDALPICKEFGNMSQLKFLGLSTT-HLEKSS----VLPIAHLNISKVLLVL 147 (520)
T ss_dssp CSEEECCSSC-------------------CSSCCCCGGGGGCTTCCEEEEEES-SCCGGG----GGGGTTSCEEEEEEEE
T ss_pred ccEEeccCCc-------------------cccccchhhhccCCcceEEEecCc-ccchhh----ccccccceeeEEEeec
Confidence 7777777776 222111111125667777777764 333322 2335555 7777766
Q ss_pred CC
Q 046157 223 CD 224 (577)
Q Consensus 223 ~~ 224 (577)
+.
T Consensus 148 n~ 149 (520)
T 2z7x_B 148 GE 149 (520)
T ss_dssp CT
T ss_pred cc
Confidence 53
No 20
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.86 E-value=8.2e-22 Score=202.21 Aligned_cols=423 Identities=17% Similarity=0.154 Sum_probs=268.1
Q ss_pred CCCccEEeccCCCCcChhhHHHHHHcCCCCCeeecCCCccccchhHHHHHhhcCCCcEeeccCCCCCCCCCCcCcccccc
Q 046157 90 GLDLESLNISNLKSFPFMGLKELGTKMKNLKELNCSKNFSFRDSDLIAVAETCEFLEVLDISYPENDSSFLPQGFQNIQS 169 (577)
Q Consensus 90 ~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 169 (577)
++++++|+++++. +..... .....+++|++|+++++. +.... ......+++|++|++++|.
T Consensus 25 ~~~L~~L~Ls~n~-l~~~~~-~~~~~l~~L~~L~Ls~n~-i~~~~-~~~~~~l~~L~~L~Ls~n~--------------- 85 (549)
T 2z81_A 25 TAAMKSLDLSFNK-ITYIGH-GDLRACANLQVLILKSSR-INTIE-GDAFYSLGSLEHLDLSDNH--------------- 85 (549)
T ss_dssp CTTCCEEECCSSC-CCEECS-STTSSCTTCCEEECTTSC-CCEEC-TTTTTTCTTCCEEECTTSC---------------
T ss_pred CCCccEEECcCCc-cCccCh-hhhhcCCcccEEECCCCC-cCccC-hhhccccccCCEEECCCCc---------------
Confidence 3689999999875 322111 112467999999998873 32211 1122368899999999998
Q ss_pred cccccCHHHHHHHHHcCccCcEEeccCCcccChhHHHHHHhcCCCCcEEEeccCCCCCHHHHHHHHhcCCCccEEEecCC
Q 046157 170 FSFYITDSGIEALSMKLKRLKRINLSGNFFITDKSLMFLSSNLVLLREILIRDCDFITQSGISFAMRNSPNLVSISVNGI 249 (577)
Q Consensus 170 ~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 249 (577)
++......+. .+++|++|+++++. ++..........+++|++|++.++....... ...+..+++|++|++.++
T Consensus 86 ----l~~~~~~~~~-~l~~L~~L~Ls~n~-l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~-~~~~~~l~~L~~L~L~~n 158 (549)
T 2z81_A 86 ----LSSLSSSWFG-PLSSLKYLNLMGNP-YQTLGVTSLFPNLTNLQTLRIGNVETFSEIR-RIDFAGLTSLNELEIKAL 158 (549)
T ss_dssp ----CCSCCHHHHT-TCTTCCEEECTTCC-CSSSCSSCSCTTCTTCCEEEEEESSSCCEEC-TTTTTTCCEEEEEEEEET
T ss_pred ----cCccCHHHhc-cCCCCcEEECCCCc-ccccchhhhhhccCCccEEECCCCccccccC-HhhhhcccccCeeeccCC
Confidence 4433233343 78999999999863 3221112233568899999999875333211 023456889999999987
Q ss_pred CCCCcchhHHHHhhhhcCCCEEEcCCCCCChHHHHHHHhcCCCCcEEEecCCCCCCHHH-HHHHHhcCCCcCeeeccccc
Q 046157 250 GIPTIDSCFKESFAYARGLCEIDLSNSFISDELLRLLGEACLPLKKLVLSHCYNFTLAG-ISFLLSKYQSLEHLNLEAAN 328 (577)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~-l~~~~~~~~~L~~L~l~~~~ 328 (577)
.+.. ..+..+..+++|++|++..+..... ...+...+++|+.|+++++....... -..+...+++|+.|+++++.
T Consensus 159 ~l~~---~~~~~l~~l~~L~~L~l~~n~~~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~ 234 (549)
T 2z81_A 159 SLRN---YQSQSLKSIRDIHHLTLHLSESAFL-LEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSV 234 (549)
T ss_dssp TCCE---ECTTTTTTCSEEEEEEEECSBSTTH-HHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCE
T ss_pred cccc---cChhhhhccccCceEecccCccccc-chhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccc
Confidence 6532 2344566778888888888766532 22334447888888888764322100 00011235677777777665
Q ss_pred ccChHHHHHHH---hcCCCCCEEeecCCCC-----------------------------CCh----HHHHHHHhhCCCCC
Q 046157 329 FLEDESMIDLS---KFLTSLNFIDLGFCAK-----------------------------LTN----STFFTILRECPLLS 372 (577)
Q Consensus 329 ~~~~~~~~~l~---~~~~~L~~L~l~~~~~-----------------------------~~~----~~l~~l~~~~~~L~ 372 (577)
+++.....+. ..+++|+.+++.+|.- +.. ..+..+....++|+
T Consensus 235 -l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~ 313 (549)
T 2z81_A 235 -LTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVK 313 (549)
T ss_dssp -EEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCC
T ss_pred -cchhHHHHHHHHhhhhccccccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccce
Confidence 4444444332 2345556665555431 100 01112233467888
Q ss_pred eEEeeeccCCCCcccccc-cCCCCccEEEcCCCCCCCHHHHHHH--HhhCCCccEEecCCCCCCCHHH-HHHHHhhCCCC
Q 046157 373 EIKMETTNLGLDDFTTPL-VINPQVKSLHLARNGNLSDESLKKL--AILCPNLEVIDLSHCLGITEEG-IGEILKSCCEI 448 (577)
Q Consensus 373 ~L~l~~~~~~~~~~~~~~-~~~~~L~~L~l~~~~~l~~~~l~~l--~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~~~L 448 (577)
+|++.+|.+.. .+..+ ..+++|+.|++++|. +.+...... ...+++|+.|++++| .++... ....+..+++|
T Consensus 314 ~L~l~~n~l~~--ip~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~~~l~~L 389 (549)
T 2z81_A 314 RITVENSKVFL--VPCSFSQHLKSLEFLDLSENL-MVEEYLKNSACKGAWPSLQTLVLSQN-HLRSMQKTGEILLTLKNL 389 (549)
T ss_dssp EEEEESSCCCC--CCHHHHHHCTTCCEEECCSSC-CCHHHHHHHTCTTSSTTCCEEECTTS-CCCCHHHHHHHGGGCTTC
T ss_pred EEEeccCcccc--CCHHHHhcCccccEEEccCCc-cccccccchhhhhccccCcEEEccCC-cccccccchhhhhcCCCC
Confidence 88888887653 23333 468999999999987 666543322 245799999999998 565432 23457889999
Q ss_pred cEEEccccccccccc-ccccCCCceEEEccCCCCCHHHHHHHHHhCCCccEEecCCCCCCChhhHHHHHhhCCCCcEEEe
Q 046157 449 KCLEIKRCRAVFDLG-IDLELPKLEVLQASGSALNDHALKMIANTCSRILHLDLDNCLNVTTSGVKEVVEHCRTLREINL 527 (577)
Q Consensus 449 ~~L~l~~~~~l~~~~-~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~c~~l~~~~l~~~~~~~~~L~~L~l 527 (577)
+.|++++|. ++... ....+++|+.|++++|.++.... ...++|+.|++++|. ++.. ...+++|++|++
T Consensus 390 ~~L~Ls~N~-l~~lp~~~~~~~~L~~L~Ls~N~l~~l~~----~~~~~L~~L~Ls~N~-l~~~-----~~~l~~L~~L~L 458 (549)
T 2z81_A 390 TSLDISRNT-FHPMPDSCQWPEKMRFLNLSSTGIRVVKT----CIPQTLEVLDVSNNN-LDSF-----SLFLPRLQELYI 458 (549)
T ss_dssp CEEECTTCC-CCCCCSCCCCCTTCCEEECTTSCCSCCCT----TSCTTCSEEECCSSC-CSCC-----CCCCTTCCEEEC
T ss_pred CEEECCCCC-CccCChhhcccccccEEECCCCCcccccc----hhcCCceEEECCCCC-hhhh-----cccCChhcEEEC
Confidence 999999996 55443 34567899999999998864211 013699999999974 6642 257899999999
Q ss_pred cCCCCCcHHHHHHHHHhCCCCceeccCCCCCCChhh
Q 046157 528 RWCDEVNVDIVAWMVFSRPSLRKIIPPCGFAPTESQ 563 (577)
Q Consensus 528 ~~c~~~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~ 563 (577)
++|. ++ .+.. ...+++|+.|+++.+ .++...
T Consensus 459 s~N~-l~--~ip~-~~~l~~L~~L~Ls~N-~l~~~~ 489 (549)
T 2z81_A 459 SRNK-LK--TLPD-ASLFPVLLVMKISRN-QLKSVP 489 (549)
T ss_dssp CSSC-CS--SCCC-GGGCTTCCEEECCSS-CCCCCC
T ss_pred CCCc-cC--cCCC-cccCccCCEEecCCC-ccCCcC
Confidence 9984 33 1222 246899999999965 454443
No 21
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.85 E-value=6.2e-23 Score=216.05 Aligned_cols=138 Identities=17% Similarity=0.125 Sum_probs=72.1
Q ss_pred CCCccEEecCCCCCCCHHHHHHHHhhCCCCcEEEccccccccccc--ccccCCCceEEEccCCCCCHHH-HHHHHHhCCC
Q 046157 419 CPNLEVIDLSHCLGITEEGIGEILKSCCEIKCLEIKRCRAVFDLG--IDLELPKLEVLQASGSALNDHA-LKMIANTCSR 495 (577)
Q Consensus 419 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~--~~~~~~~L~~L~l~~~~i~~~~-~~~l~~~~~~ 495 (577)
+++|+.|+++++. ++.......+.++++|+.|++++|. +.... ....+|+|+.|++++|.+.... .......+++
T Consensus 404 l~~L~~L~L~~N~-l~~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~ 481 (680)
T 1ziw_A 404 LGHLEVLDLGLNE-IGQELTGQEWRGLENIFEIYLSYNK-YLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRN 481 (680)
T ss_dssp CTTCCEEECCSSC-CEEECCSGGGTTCTTCCEEECCSCS-EEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTT
T ss_pred CCCCCEEeCCCCc-CccccCcccccCcccccEEecCCCC-cceeChhhhhcCcccccchhccccccccccCCcccccCCC
Confidence 4556666665552 2211001123455666666666665 22221 2235667777777776554211 1111234678
Q ss_pred ccEEecCCCCCCChhhHHHHHhhCCCCcEEEecCCCCCcHH--H----HHHHHHhCCCCceeccCCCCCCCh
Q 046157 496 ILHLDLDNCLNVTTSGVKEVVEHCRTLREINLRWCDEVNVD--I----VAWMVFSRPSLRKIIPPCGFAPTE 561 (577)
Q Consensus 496 L~~L~l~~c~~l~~~~l~~~~~~~~~L~~L~l~~c~~~~~~--~----~~~~~~~~~~L~~l~~~~~~~~~~ 561 (577)
|+.|++++|. ++.... ..+.++++|+.|+++++.-.... . ....+..+++|+.|+++.+ .++.
T Consensus 482 L~~L~Ls~N~-l~~i~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N-~l~~ 550 (680)
T 1ziw_A 482 LTILDLSNNN-IANIND-DMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESN-GFDE 550 (680)
T ss_dssp CCEEECCSSC-CCCCCT-TTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSS-CCCC
T ss_pred CCEEECCCCC-CCcCCh-hhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCC-CCCC
Confidence 8888888764 553221 22467788888888887422100 0 0012456788888888754 3443
No 22
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.84 E-value=5e-21 Score=194.81 Aligned_cols=416 Identities=17% Similarity=0.106 Sum_probs=248.5
Q ss_pred CCCccEEeccCCCCcChhhHHHHHHcCCCCCeeecCCCccccchhHHHHHhhcCCCcEeeccCCCCCCCCCCcCcccccc
Q 046157 90 GLDLESLNISNLKSFPFMGLKELGTKMKNLKELNCSKNFSFRDSDLIAVAETCEFLEVLDISYPENDSSFLPQGFQNIQS 169 (577)
Q Consensus 90 ~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 169 (577)
++++++|+++++. +.... ......+++|++|+++++. +.... ......+++|++|++++|.
T Consensus 20 ~~~L~~L~Ls~n~-i~~~~-~~~~~~l~~L~~L~Ls~n~-l~~~~-~~~~~~l~~L~~L~Ls~N~--------------- 80 (520)
T 2z7x_B 20 SQKTTILNISQNY-ISELW-TSDILSLSKLRILIISHNR-IQYLD-ISVFKFNQELEYLDLSHNK--------------- 80 (520)
T ss_dssp CTTCSEEECCSSC-CCCCC-HHHHTTCTTCCEEECCSSC-CCEEE-GGGGTTCTTCCEEECCSSC---------------
T ss_pred cccccEEECCCCc-ccccC-hhhccccccccEEecCCCc-cCCcC-hHHhhcccCCCEEecCCCc---------------
Confidence 3789999999875 32221 1234568999999998873 32211 1223468899999999998
Q ss_pred cccccCHHHHHHHHHcCccCcEEeccCCcccChhHHHHHHhcCCCCcEEEeccCCCCCHHHHHHHHhcCCCc--cEEEec
Q 046157 170 FSFYITDSGIEALSMKLKRLKRINLSGNFFITDKSLMFLSSNLVLLREILIRDCDFITQSGISFAMRNSPNL--VSISVN 247 (577)
Q Consensus 170 ~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L--~~L~l~ 247 (577)
++. +... .+++|++|+++++. ++...+......+++|++|+++++. +... .+..+++| +.|++.
T Consensus 81 ----l~~--lp~~--~l~~L~~L~L~~N~-l~~~~~p~~~~~l~~L~~L~L~~n~-l~~~----~~~~l~~L~L~~L~l~ 146 (520)
T 2z7x_B 81 ----LVK--ISCH--PTVNLKHLDLSFNA-FDALPICKEFGNMSQLKFLGLSTTH-LEKS----SVLPIAHLNISKVLLV 146 (520)
T ss_dssp ----CCE--EECC--CCCCCSEEECCSSC-CSSCCCCGGGGGCTTCCEEEEEESS-CCGG----GGGGGTTSCEEEEEEE
T ss_pred ----eee--cCcc--ccCCccEEeccCCc-cccccchhhhccCCcceEEEecCcc-cchh----hccccccceeeEEEee
Confidence 332 1111 57899999999863 3221122234568999999999864 4432 24557777 999999
Q ss_pred CCCC--CCcchhHHH-----------------------HhhhhcCCCEEEcCCCC-------CChHHHHHHHhcCCCCcE
Q 046157 248 GIGI--PTIDSCFKE-----------------------SFAYARGLCEIDLSNSF-------ISDELLRLLGEACLPLKK 295 (577)
Q Consensus 248 ~~~~--~~~~~~~~~-----------------------~~~~~~~L~~L~l~~~~-------~~~~~l~~l~~~~~~L~~ 295 (577)
++.+ ......... .+..+++|+.++++++. +.. .+.. ...+++|+.
T Consensus 147 ~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~-~~~~-l~~l~~L~~ 224 (520)
T 2z7x_B 147 LGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLS-ILAK-LQTNPKLSN 224 (520)
T ss_dssp ECTTTTSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHH-HHHG-GGGCTTCCE
T ss_pred cccccccccccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeec-chhh-hccccchhh
Confidence 8765 111111111 12235666666666653 111 1111 233777888
Q ss_pred EEecCCCCCCHHHHHHHHh--cCCCcCeeecccccccChHHHHHH----HhcCCCCCEEeecCCC-CCChHHHHHHHhhC
Q 046157 296 LVLSHCYNFTLAGISFLLS--KYQSLEHLNLEAANFLEDESMIDL----SKFLTSLNFIDLGFCA-KLTNSTFFTILREC 368 (577)
Q Consensus 296 L~l~~~~~~~~~~l~~~~~--~~~~L~~L~l~~~~~~~~~~~~~l----~~~~~~L~~L~l~~~~-~~~~~~l~~l~~~~ 368 (577)
|++.++.. ....+..+.. ..++|++|+++++. +++.....+ ...+++|+.++++.+. .+....+..+. ..
T Consensus 225 L~l~~~~l-~~~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~~~p~~~~~~~~-~~ 301 (520)
T 2z7x_B 225 LTLNNIET-TWNSFIRILQLVWHTTVWYFSISNVK-LQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIF-SN 301 (520)
T ss_dssp EEEEEEEE-EHHHHHHHHHHHHTSSCSEEEEEEEE-EESCCCCCCCCCCSCCCCEEEEEEEEECCCCSCTHHHHHHH-HT
T ss_pred cccccccc-CHHHHHHHHHHhhhCcccEEEeeccc-ccCccccchhhcccccCceeEeccccccceecchhhhhccc-cc
Confidence 88876532 2222222221 24578888887775 221111111 0235566666666544 22223333322 23
Q ss_pred CCCCeEEeeeccCCCCcccccccCCCCccEEEcCCCCCCCHHHHHHHHhhCCCccEEecCCCCCCCH-HHHHHHHhhCCC
Q 046157 369 PLLSEIKMETTNLGLDDFTTPLVINPQVKSLHLARNGNLSDESLKKLAILCPNLEVIDLSHCLGITE-EGIGEILKSCCE 447 (577)
Q Consensus 369 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~~~ 447 (577)
++|+.|+++++.+..... ...+++|+.|++++|. +++.....+ ..+++|+.|++++| .++. ..+...+..+++
T Consensus 302 ~~L~~L~l~~n~l~~~~~---~~~l~~L~~L~Ls~n~-l~~~~~~~~-~~l~~L~~L~L~~N-~l~~l~~~~~~~~~l~~ 375 (520)
T 2z7x_B 302 MNIKNFTVSGTRMVHMLC---PSKISPFLHLDFSNNL-LTDTVFENC-GHLTELETLILQMN-QLKELSKIAEMTTQMKS 375 (520)
T ss_dssp CCCSEEEEESSCCCCCCC---CSSCCCCCEEECCSSC-CCTTTTTTC-CCCSSCCEEECCSS-CCCBHHHHHHHHTTCTT
T ss_pred CceeEEEcCCCccccccc---hhhCCcccEEEeECCc-cChhhhhhh-ccCCCCCEEEccCC-ccCccccchHHHhhCCC
Confidence 578888888887644321 2577888999998876 544222222 35788999999887 4553 234455778889
Q ss_pred CcEEEccccccccccc--ccccCCCceEEEccCCCCCHHHHHHHHHhCCCccEEecCCCCCCChhhHHHHHhhCCCCcEE
Q 046157 448 IKCLEIKRCRAVFDLG--IDLELPKLEVLQASGSALNDHALKMIANTCSRILHLDLDNCLNVTTSGVKEVVEHCRTLREI 525 (577)
Q Consensus 448 L~~L~l~~~~~l~~~~--~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~c~~l~~~~l~~~~~~~~~L~~L 525 (577)
|+.|++++|....... ....+++|++|++++|.+++.....+ .++|+.|++++|. ++. +..-+..+++|++|
T Consensus 376 L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l---~~~L~~L~Ls~N~-l~~--ip~~~~~l~~L~~L 449 (520)
T 2z7x_B 376 LQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCL---PPRIKVLDLHSNK-IKS--IPKQVVKLEALQEL 449 (520)
T ss_dssp CCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSC---CTTCCEEECCSSC-CCC--CCGGGGGCTTCCEE
T ss_pred CCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhhh---cccCCEEECCCCc-ccc--cchhhhcCCCCCEE
Confidence 9999998887333133 23467888999998888875332221 1688899988874 653 22223478888999
Q ss_pred EecCCCCCcHHHHHHHHHhCCCCceeccCCCC
Q 046157 526 NLRWCDEVNVDIVAWMVFSRPSLRKIIPPCGF 557 (577)
Q Consensus 526 ~l~~c~~~~~~~~~~~~~~~~~L~~l~~~~~~ 557 (577)
++++|. ++. .....+..+++|+.|+++++.
T Consensus 450 ~L~~N~-l~~-l~~~~~~~l~~L~~L~l~~N~ 479 (520)
T 2z7x_B 450 NVASNQ-LKS-VPDGIFDRLTSLQKIWLHTNP 479 (520)
T ss_dssp ECCSSC-CCC-CCTTTTTTCTTCCEEECCSSC
T ss_pred ECCCCc-CCc-cCHHHhccCCcccEEECcCCC
Confidence 888884 331 111135568888888888643
No 23
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.84 E-value=5.7e-23 Score=212.03 Aligned_cols=133 Identities=19% Similarity=0.092 Sum_probs=77.5
Q ss_pred ccCceecccCccCCchhHHHHHhhcCCCccEEeccCCCCcChhhHHHHHHcCCCCCeeecCCCccccchhHHHHHhhcCC
Q 046157 65 QNLKKIDLSEFQGDPNSILYLISRSGLDLESLNISNLKSFPFMGLKELGTKMKNLKELNCSKNFSFRDSDLIAVAETCEF 144 (577)
Q Consensus 65 ~~l~~l~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~ 144 (577)
++++.|++++..-.... .......++|++|+++++. +.... ......+++|++|+++++. +.... ......+++
T Consensus 28 ~~l~~L~Ls~n~l~~~~--~~~~~~l~~L~~L~Ls~n~-i~~i~-~~~~~~l~~L~~L~L~~n~-l~~~~-~~~~~~l~~ 101 (570)
T 2z63_A 28 FSTKNLDLSFNPLRHLG--SYSFFSFPELQVLDLSRCE-IQTIE-DGAYQSLSHLSTLILTGNP-IQSLA-LGAFSGLSS 101 (570)
T ss_dssp SSCCEEECCSCCCCEEC--TTTTTTCSSCCEEECTTCC-CCEEC-TTTTTTCTTCCEEECTTCC-CCEEC-TTTTTTCTT
T ss_pred ccccEEEccCCccCccC--hhHhhCCCCceEEECCCCc-CCccC-cccccCchhCCEEeCcCCc-CCccC-HhhhcCccc
Confidence 46888888876421110 0011335789999998774 22211 1123457899999998773 22111 112236788
Q ss_pred CcEeeccCCCCCCCCCCcCcccccccccccCHHHHHHHHHcCccCcEEeccCCcccChhHHHHHHhcCCCCcEEEeccCC
Q 046157 145 LEVLDISYPENDSSFLPQGFQNIQSFSFYITDSGIEALSMKLKRLKRINLSGNFFITDKSLMFLSSNLVLLREILIRDCD 224 (577)
Q Consensus 145 L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~ 224 (577)
|++|+++++. ++......+ ..+++|++|+++++. +....+......+++|++|+++++.
T Consensus 102 L~~L~L~~n~-------------------l~~l~~~~~-~~l~~L~~L~L~~n~-l~~~~lp~~~~~l~~L~~L~l~~n~ 160 (570)
T 2z63_A 102 LQKLVAVETN-------------------LASLENFPI-GHLKTLKELNVAHNL-IQSFKLPEYFSNLTNLEHLDLSSNK 160 (570)
T ss_dssp CCEEECTTSC-------------------CCCSTTCSC-TTCTTCCEEECCSSC-CCCCCCCGGGGGCTTCCEEECTTSC
T ss_pred cccccccccc-------------------cccCCCccc-cccccccEEecCCCc-cceecChhhhcccCCCCEEeCcCCc
Confidence 9999999887 222111012 267899999999863 2221122223568999999998864
No 24
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.84 E-value=2.3e-22 Score=211.65 Aligned_cols=280 Identities=17% Similarity=0.160 Sum_probs=121.9
Q ss_pred hhhhcCCCEEEcCCCCCChHHHHHHHhcCCCCcEEEecCCCC----CCHHHHHHHHhcCCCcCeeecccccccChHHHHH
Q 046157 262 FAYARGLCEIDLSNSFISDELLRLLGEACLPLKKLVLSHCYN----FTLAGISFLLSKYQSLEHLNLEAANFLEDESMID 337 (577)
Q Consensus 262 ~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~----~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~ 337 (577)
+..+++|++|+++++.+...... ....+++|++|+++++.. +....+.. ...++|+.|+++++. ++......
T Consensus 325 ~~~l~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~--~~~~~L~~L~L~~n~-l~~~~~~~ 400 (680)
T 1ziw_A 325 FQWLKCLEHLNMEDNDIPGIKSN-MFTGLINLKYLSLSNSFTSLRTLTNETFVS--LAHSPLHILNLTKNK-ISKIESDA 400 (680)
T ss_dssp TTTCTTCCEEECCSCCBCCCCTT-TTTTCTTCCEEECTTCBSCCCEECTTTTGG--GTTSCCCEEECTTSC-CCEECTTT
T ss_pred cccCCCCCEEECCCCccCCCChh-HhccccCCcEEECCCCchhhhhcchhhhcc--cccCcCceEECCCCC-CCeEChhh
Confidence 34455566666655544331111 112255566666655421 00000000 012355555555554 22211111
Q ss_pred HHhcCCCCCEEeecCCCCCChHHHHHHHhhCCCCCeEEeeeccCCCCcccccccCCCCccEEEcCCCCCCCHHHHHHHHh
Q 046157 338 LSKFLTSLNFIDLGFCAKLTNSTFFTILRECPLLSEIKMETTNLGLDDFTTPLVINPQVKSLHLARNGNLSDESLKKLAI 417 (577)
Q Consensus 338 l~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~l~~l~~ 417 (577)
...+++|+.|+++++. ++..........+++|++|++++|.+.... ...+..+++|+.|+++++..-..........
T Consensus 401 -~~~l~~L~~L~L~~N~-l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~ 477 (680)
T 1ziw_A 401 -FSWLGHLEVLDLGLNE-IGQELTGQEWRGLENIFEIYLSYNKYLQLT-RNSFALVPSLQRLMLRRVALKNVDSSPSPFQ 477 (680)
T ss_dssp -TTTCTTCCEEECCSSC-CEEECCSGGGTTCTTCCEEECCSCSEEECC-TTTTTTCTTCCEEECTTSCCBCTTCSSCTTT
T ss_pred -hhCCCCCCEEeCCCCc-CccccCcccccCcccccEEecCCCCcceeC-hhhhhcCcccccchhccccccccccCCcccc
Confidence 1235566666665543 111000011234556666666665543222 3344455666666665544110000111122
Q ss_pred hCCCccEEecCCCCCCCHHHHHHHHhhCCCCcEEEccccccccccc----------ccccCCCceEEEccCCCCCHHHHH
Q 046157 418 LCPNLEVIDLSHCLGITEEGIGEILKSCCEIKCLEIKRCRAVFDLG----------IDLELPKLEVLQASGSALNDHALK 487 (577)
Q Consensus 418 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~----------~~~~~~~L~~L~l~~~~i~~~~~~ 487 (577)
.+++|+.|++++| .++... ...+.++++|+.|++++|. ++... ....+++|+.|++++|.++.....
T Consensus 478 ~l~~L~~L~Ls~N-~l~~i~-~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~ 554 (680)
T 1ziw_A 478 PLRNLTILDLSNN-NIANIN-DDMLEGLEKLEILDLQHNN-LARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVE 554 (680)
T ss_dssp TCTTCCEEECCSS-CCCCCC-TTTTTTCTTCCEEECCSSC-CGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTT
T ss_pred cCCCCCEEECCCC-CCCcCC-hhhhccccccCEEeCCCCC-ccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHH
Confidence 4566666666665 233211 1123456666666666665 22211 123456666666666655532111
Q ss_pred HHHHhCCCccEEecCCCCCCChhhHHHHHhhCCCCcEEEecCCCCCcHHHHHHHHHhCCCCceeccCC
Q 046157 488 MIANTCSRILHLDLDNCLNVTTSGVKEVVEHCRTLREINLRWCDEVNVDIVAWMVFSRPSLRKIIPPC 555 (577)
Q Consensus 488 ~l~~~~~~L~~L~l~~c~~l~~~~l~~~~~~~~~L~~L~l~~c~~~~~~~~~~~~~~~~~L~~l~~~~ 555 (577)
....+++|+.|+++++ +++... ...+..+++|+.|+++++. ++......+...+++|+.+++.+
T Consensus 555 -~~~~l~~L~~L~Ls~N-~l~~l~-~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~~~~~L~~l~l~~ 618 (680)
T 1ziw_A 555 -VFKDLFELKIIDLGLN-NLNTLP-ASVFNNQVSLKSLNLQKNL-ITSVEKKVFGPAFRNLTELDMRF 618 (680)
T ss_dssp -TTTTCTTCCEEECCSS-CCCCCC-TTTTTTCTTCCEEECTTSC-CCBCCHHHHHHHHTTCSEEECTT
T ss_pred -HcccccCcceeECCCC-CCCcCC-HhHhCCCCCCCEEECCCCc-CCccChhHhcccccccCEEEccC
Confidence 1224566666666654 344221 1123456666666666652 22111111112456666666654
No 25
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.82 E-value=1.4e-22 Score=209.10 Aligned_cols=417 Identities=18% Similarity=0.167 Sum_probs=209.3
Q ss_pred CCCccEEeccCCCCcChhhHHHHHHcCCCCCeeecCCCccccchhHHHHHhhcCCCcEeeccCCCCCCCCCCcCcccccc
Q 046157 90 GLDLESLNISNLKSFPFMGLKELGTKMKNLKELNCSKNFSFRDSDLIAVAETCEFLEVLDISYPENDSSFLPQGFQNIQS 169 (577)
Q Consensus 90 ~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 169 (577)
.++++.|+++++. +..... .....+++|++|+++++. +.... ......+++|++|+++++.
T Consensus 27 ~~~l~~L~Ls~n~-l~~~~~-~~~~~l~~L~~L~Ls~n~-i~~i~-~~~~~~l~~L~~L~L~~n~--------------- 87 (570)
T 2z63_A 27 PFSTKNLDLSFNP-LRHLGS-YSFFSFPELQVLDLSRCE-IQTIE-DGAYQSLSHLSTLILTGNP--------------- 87 (570)
T ss_dssp CSSCCEEECCSCC-CCEECT-TTTTTCSSCCEEECTTCC-CCEEC-TTTTTTCTTCCEEECTTCC---------------
T ss_pred cccccEEEccCCc-cCccCh-hHhhCCCCceEEECCCCc-CCccC-cccccCchhCCEEeCcCCc---------------
Confidence 4589999999775 222111 123468999999999873 32211 1123368999999999997
Q ss_pred cccccCHHHHHHHHHcCccCcEEeccCCcccChhHHHHHHhcCCCCcEEEeccCCCCCHHHHHHHHhcCCCccEEEecCC
Q 046157 170 FSFYITDSGIEALSMKLKRLKRINLSGNFFITDKSLMFLSSNLVLLREILIRDCDFITQSGISFAMRNSPNLVSISVNGI 249 (577)
Q Consensus 170 ~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 249 (577)
++......+. .+++|++|+++++. ++...... ...+++|++|+++++.... ..++..+..+++|+.|++.++
T Consensus 88 ----l~~~~~~~~~-~l~~L~~L~L~~n~-l~~l~~~~-~~~l~~L~~L~L~~n~l~~-~~lp~~~~~l~~L~~L~l~~n 159 (570)
T 2z63_A 88 ----IQSLALGAFS-GLSSLQKLVAVETN-LASLENFP-IGHLKTLKELNVAHNLIQS-FKLPEYFSNLTNLEHLDLSSN 159 (570)
T ss_dssp ----CCEECTTTTT-TCTTCCEEECTTSC-CCCSTTCS-CTTCTTCCEEECCSSCCCC-CCCCGGGGGCTTCCEEECTTS
T ss_pred ----CCccCHhhhc-Cccccccccccccc-cccCCCcc-ccccccccEEecCCCccce-ecChhhhcccCCCCEEeCcCC
Confidence 3322112222 68899999999863 22211101 3568999999999875322 111234567999999999998
Q ss_pred CCCCcchhHHHHhhhhcCC----CEEEcCCCCCChHHHHHHHhcCCCCcEEEecCCCCCCH-------------------
Q 046157 250 GIPTIDSCFKESFAYARGL----CEIDLSNSFISDELLRLLGEACLPLKKLVLSHCYNFTL------------------- 306 (577)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~L----~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~------------------- 306 (577)
.+...... .+..+++| ++++++++.+.......+. ..+|+.|++.++.....
T Consensus 160 ~l~~~~~~---~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~--~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~ 234 (570)
T 2z63_A 160 KIQSIYCT---DLRVLHQMPLLNLSLDLSLNPMNFIQPGAFK--EIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVL 234 (570)
T ss_dssp CCCEECGG---GGHHHHTCTTCCCEEECTTCCCCEECTTTTT--TCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEE
T ss_pred ccceecHH---HccchhccchhhhhcccCCCCceecCHHHhc--cCcceeEecccccccccchhhhhcCccccceeeecc
Confidence 76544332 33444555 6777777654321111110 11344444333210000
Q ss_pred -------------------------------------HHHHHHHhcCCCcCeeecccccccChHHHHHHHhcCCCCCEEe
Q 046157 307 -------------------------------------AGISFLLSKYQSLEHLNLEAANFLEDESMIDLSKFLTSLNFID 349 (577)
Q Consensus 307 -------------------------------------~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~ 349 (577)
......+..+++|+.|+++++. +.. +......+ +|++|+
T Consensus 235 ~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~-l~~--l~~~~~~~-~L~~L~ 310 (570)
T 2z63_A 235 GEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVT-IER--VKDFSYNF-GWQHLE 310 (570)
T ss_dssp EECCCCSSCEECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCE-ECS--CCBCCSCC-CCSEEE
T ss_pred ccccCchhhhhcchhhhccccccchhhhhhhcchhhhhhchhhhcCcCcccEEEecCcc-chh--hhhhhccC-CccEEe
Confidence 0000112345667777776654 221 11111122 556666
Q ss_pred ecCCCCCChHHHHHHHhhCCCCCeEEeeeccCCCCcccccccCCCCccEEEcCCCCCCCHHH--HHHH------------
Q 046157 350 LGFCAKLTNSTFFTILRECPLLSEIKMETTNLGLDDFTTPLVINPQVKSLHLARNGNLSDES--LKKL------------ 415 (577)
Q Consensus 350 l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~--l~~l------------ 415 (577)
++++. +..... ..+++|+.|++.++...... ....+++|+.|++++|. ++... ...+
T Consensus 311 l~~n~-~~~l~~----~~l~~L~~L~l~~n~~~~~~---~~~~~~~L~~L~l~~n~-l~~~~~~~~~~~~~~~L~~L~l~ 381 (570)
T 2z63_A 311 LVNCK-FGQFPT----LKLKSLKRLTFTSNKGGNAF---SEVDLPSLEFLDLSRNG-LSFKGCCSQSDFGTTSLKYLDLS 381 (570)
T ss_dssp EESCB-CSSCCB----CBCSSCCEEEEESCBSCCBC---CCCBCTTCCEEECCSSC-CBEEEEEEHHHHTCSCCCEEECC
T ss_pred eccCc-ccccCc----ccccccCEEeCcCCcccccc---ccccCCCCCEEeCcCCc-cCccccccccccccCccCEEECC
Confidence 65543 110000 13445555555544432211 11334444444444433 22110 0000
Q ss_pred ----------HhhCCCccEEecCCCCCCCHHHHHHHHhhCCCCcEEEccccccccccc-ccccCCCceEEEccCCCCCHH
Q 046157 416 ----------AILCPNLEVIDLSHCLGITEEGIGEILKSCCEIKCLEIKRCRAVFDLG-IDLELPKLEVLQASGSALNDH 484 (577)
Q Consensus 416 ----------~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~-~~~~~~~L~~L~l~~~~i~~~ 484 (577)
...+++|+.|++++|. ++.......+..+++|+.|++++|....... ....+++|++|++++|.+++.
T Consensus 382 ~n~l~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 460 (570)
T 2z63_A 382 FNGVITMSSNFLGLEQLEHLDFQHSN-LKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQEN 460 (570)
T ss_dssp SCSEEEEEEEEETCTTCCEEECTTSE-EESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGG
T ss_pred CCccccccccccccCCCCEEEccCCc-cccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccc
Confidence 1224445555554431 1111111123455666666666665222221 233567777777777766532
Q ss_pred HHHHHHHhCCCccEEecCCCCCCChhhHHHHHhhCCCCcEEEecCCCCCcHHHHHHHHHhCCCCceeccCCC
Q 046157 485 ALKMIANTCSRILHLDLDNCLNVTTSGVKEVVEHCRTLREINLRWCDEVNVDIVAWMVFSRPSLRKIIPPCG 556 (577)
Q Consensus 485 ~~~~l~~~~~~L~~L~l~~c~~l~~~~l~~~~~~~~~L~~L~l~~c~~~~~~~~~~~~~~~~~L~~l~~~~~ 556 (577)
.+......+++|+.|++++|. ++..... .+..+++|++|++++|. ++.. ....+..+++|+.|+++++
T Consensus 461 ~~p~~~~~l~~L~~L~l~~n~-l~~~~~~-~~~~l~~L~~L~l~~n~-l~~~-~~~~~~~l~~L~~L~l~~N 528 (570)
T 2z63_A 461 FLPDIFTELRNLTFLDLSQCQ-LEQLSPT-AFNSLSSLQVLNMASNQ-LKSV-PDGIFDRLTSLQKIWLHTN 528 (570)
T ss_dssp EECSCCTTCTTCCEEECTTSC-CCEECTT-TTTTCTTCCEEECCSSC-CSCC-CTTTTTTCTTCCEEECCSS
T ss_pred cchhhhhcccCCCEEECCCCc-cccCChh-hhhcccCCCEEeCCCCc-CCCC-CHHHhhcccCCcEEEecCC
Confidence 221222346777777777764 5433222 23567777777777763 2211 1123446777788877754
No 26
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.81 E-value=5.4e-19 Score=169.09 Aligned_cols=283 Identities=16% Similarity=0.159 Sum_probs=125.2
Q ss_pred cCHHHHHHHHHcCccCcEEeccCCcccChhHHHHHHhcCCCCcEEEeccCCCCCHHHHHHHHhcCCCccEEEecCCCCCC
Q 046157 174 ITDSGIEALSMKLKRLKRINLSGNFFITDKSLMFLSSNLVLLREILIRDCDFITQSGISFAMRNSPNLVSISVNGIGIPT 253 (577)
Q Consensus 174 l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 253 (577)
+.++.+..+...++.- ++..+. ..-..+..+......+++++++++. +.+..+..+. .++++.|++.++.+..
T Consensus 12 LP~eil~~If~~L~~~---d~~~~~-~vc~~W~~~~~~~~~~~~l~l~~~~-~~~~~~~~~~--~~~l~~L~l~~n~l~~ 84 (336)
T 2ast_B 12 LPDELLLGIFSCLCLP---ELLKVS-GVCKRWYRLASDESLWQTLDLTGKN-LHPDVTGRLL--SQGVIAFRCPRSFMDQ 84 (336)
T ss_dssp SCHHHHHHHHTTSCHH---HHHHTT-SSCHHHHHHHTCSTTSSEEECTTCB-CCHHHHHHHH--HTTCSEEECTTCEECS
T ss_pred CCHHHHHHHHHhCCHH---HHHHHH-HHHHHHHHHhcCchhheeecccccc-CCHHHHHhhh--hccceEEEcCCccccc
Confidence 5555555555444322 222111 1123344444333446777776643 3332222211 1566666666654422
Q ss_pred cchhHHHHhhhhcCCCEEEcCCCCCChHHHHHHHhcCCCCcEEEecCCCCCCHHHHHHHHhcCCCcCeeecccccccChH
Q 046157 254 IDSCFKESFAYARGLCEIDLSNSFISDELLRLLGEACLPLKKLVLSHCYNFTLAGISFLLSKYQSLEHLNLEAANFLEDE 333 (577)
Q Consensus 254 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~ 333 (577)
.... +..+++|++|+++++.+.+..+......+++|++|+++ ++. +++.
T Consensus 85 ~~~~----~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~--------------------------~~~-l~~~ 133 (336)
T 2ast_B 85 PLAE----HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLE--------------------------GLR-LSDP 133 (336)
T ss_dssp CCCS----CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECT--------------------------TCB-CCHH
T ss_pred cchh----hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCc--------------------------Ccc-cCHH
Confidence 2111 22345555555555555444343333344444444444 443 3333
Q ss_pred HHHHHHhcCCCCCEEeecCCCCCChHHHHHHHhhCCCCCeEEeeeccCCCCcccccccCCCCccEEEcCCCCCCCHHHHH
Q 046157 334 SMIDLSKFLTSLNFIDLGFCAKLTNSTFFTILRECPLLSEIKMETTNLGLDDFTTPLVINPQVKSLHLARNGNLSDESLK 413 (577)
Q Consensus 334 ~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~l~ 413 (577)
....+.. +++|++|++++|..+++.++..+...+++|++|+++ +|..+++..+.
T Consensus 134 ~~~~l~~-~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~-------------------------~~~~l~~~~~~ 187 (336)
T 2ast_B 134 IVNTLAK-NSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLS-------------------------WCFDFTEKHVQ 187 (336)
T ss_dssp HHHHHTT-CTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECC-------------------------CCTTCCHHHHH
T ss_pred HHHHHhc-CCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCC-------------------------CCCCcChHHHH
Confidence 3333332 455555555554444444444433333333333332 22223333333
Q ss_pred HHHhhCC-CccEEecCCCC-CCCHHHHHHHHhhCCCCcEEEccccccccccc--ccccCCCceEEEccCC-CCCHHHHHH
Q 046157 414 KLAILCP-NLEVIDLSHCL-GITEEGIGEILKSCCEIKCLEIKRCRAVFDLG--IDLELPKLEVLQASGS-ALNDHALKM 488 (577)
Q Consensus 414 ~l~~~~~-~L~~L~l~~~~-~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~--~~~~~~~L~~L~l~~~-~i~~~~~~~ 488 (577)
.....++ +|++|++++|. .+++..+...+..+++|+.|++++|..+++.. ....+++|+.|++++| .+++.++..
T Consensus 188 ~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~ 267 (336)
T 2ast_B 188 VAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLE 267 (336)
T ss_dssp HHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGG
T ss_pred HHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHH
Confidence 3333444 44444444443 34444444444444444444444444333221 1223455555555554 344443333
Q ss_pred HHHhCCCccEEecCCCCCCChhhHHHHHhhCCCCc
Q 046157 489 IANTCSRILHLDLDNCLNVTTSGVKEVVEHCRTLR 523 (577)
Q Consensus 489 l~~~~~~L~~L~l~~c~~l~~~~l~~~~~~~~~L~ 523 (577)
+. .+++|+.|++++| +++.++..+...++.|+
T Consensus 268 l~-~~~~L~~L~l~~~--i~~~~~~~l~~~l~~L~ 299 (336)
T 2ast_B 268 LG-EIPTLKTLQVFGI--VPDGTLQLLKEALPHLQ 299 (336)
T ss_dssp GG-GCTTCCEEECTTS--SCTTCHHHHHHHSTTSE
T ss_pred Hh-cCCCCCEEeccCc--cCHHHHHHHHhhCcceE
Confidence 32 3566667776666 66666665554455544
No 27
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.80 E-value=2.1e-23 Score=223.71 Aligned_cols=60 Identities=22% Similarity=0.168 Sum_probs=30.5
Q ss_pred CCccEEecCCCCCCCHHHHHHHHhhCCCCcEEEccccccccccc---ccccCCCceEEEccCCCC
Q 046157 420 PNLEVIDLSHCLGITEEGIGEILKSCCEIKCLEIKRCRAVFDLG---IDLELPKLEVLQASGSAL 481 (577)
Q Consensus 420 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~---~~~~~~~L~~L~l~~~~i 481 (577)
.+++.|+++++ .++.......+..+++|+.|++++|. ++... ....+++|+.|++++|.+
T Consensus 401 ~~l~~L~ls~N-~l~~l~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~~~~~L~~L~Ls~N~l 463 (844)
T 3j0a_A 401 LTANLIHLSEN-RLENLDILYFLLRVPHLQILILNQNR-FSSCSGDQTPSENPSLEQLFLGENML 463 (844)
T ss_dssp TTCCEEECCSC-CCCSSTTHHHHTTCTTCCEEEEESCC-CCCCCSSSSSCSCTTCCBCEEESCCC
T ss_pred cccceeecccC-ccccCchhhhhhcCCccceeeCCCCc-ccccccccccccCCccccccCCCCcc
Confidence 34555555554 23332223335567777777777776 22211 222355666666665554
No 28
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.79 E-value=1.1e-17 Score=162.90 Aligned_cols=95 Identities=20% Similarity=0.133 Sum_probs=48.6
Q ss_pred HHHhhhhcCCCEEEcCCCCCChHHHHHHHh---cCCCCcEEEecCCCC--CC---HHHH---HHHHhcCCCcCeeecccc
Q 046157 259 KESFAYARGLCEIDLSNSFISDELLRLLGE---ACLPLKKLVLSHCYN--FT---LAGI---SFLLSKYQSLEHLNLEAA 327 (577)
Q Consensus 259 ~~~~~~~~~L~~L~l~~~~~~~~~l~~l~~---~~~~L~~L~l~~~~~--~~---~~~l---~~~~~~~~~L~~L~l~~~ 327 (577)
...+..+++|++|+++++.+.+.....+.. .+++|++|+++++.. +. ..++ ...+..+++|++|+++++
T Consensus 25 ~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n 104 (386)
T 2ca6_A 25 FAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDN 104 (386)
T ss_dssp SHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSC
T ss_pred HHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCC
Confidence 334445566666666666666555444432 355666666665421 11 1122 122345666777777666
Q ss_pred cccChHHHH---HHHhcCCCCCEEeecCCC
Q 046157 328 NFLEDESMI---DLSKFLTSLNFIDLGFCA 354 (577)
Q Consensus 328 ~~~~~~~~~---~l~~~~~~L~~L~l~~~~ 354 (577)
. +++.+.. .....+++|++|++++|.
T Consensus 105 ~-l~~~~~~~l~~~l~~~~~L~~L~L~~n~ 133 (386)
T 2ca6_A 105 A-FGPTAQEPLIDFLSKHTPLEHLYLHNNG 133 (386)
T ss_dssp C-CCTTTHHHHHHHHHHCTTCCEEECCSSC
T ss_pred c-CCHHHHHHHHHHHHhCCCCCEEECcCCC
Confidence 5 4443222 222336667777776654
No 29
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.79 E-value=2.5e-19 Score=183.73 Aligned_cols=172 Identities=15% Similarity=0.098 Sum_probs=73.7
Q ss_pred CCCCeEEeeeccCCCCcccccccCCCCccEEEcCCCCCCCHHHHHHHHhhCCCccEEecCCCCCCCH-HHHHHHHhhCCC
Q 046157 369 PLLSEIKMETTNLGLDDFTTPLVINPQVKSLHLARNGNLSDESLKKLAILCPNLEVIDLSHCLGITE-EGIGEILKSCCE 447 (577)
Q Consensus 369 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~~~ 447 (577)
++|++|+++++.+.... ....+++|+.|++++|. +++.... ....+++|+.|+++++ .++. ..+...+..+++
T Consensus 331 ~~L~~L~l~~n~~~~~~---~~~~l~~L~~L~l~~n~-l~~~~~~-~~~~l~~L~~L~L~~N-~l~~~~~~~~~~~~l~~ 404 (562)
T 3a79_B 331 MNIKMLSISDTPFIHMV---CPPSPSSFTFLNFTQNV-FTDSVFQ-GCSTLKRLQTLILQRN-GLKNFFKVALMTKNMSS 404 (562)
T ss_dssp CCCSEEEEESSCCCCCC---CCSSCCCCCEEECCSSC-CCTTTTT-TCCSCSSCCEEECCSS-CCCBTTHHHHTTTTCTT
T ss_pred CcceEEEccCCCccccc---CccCCCCceEEECCCCc-cccchhh-hhcccCCCCEEECCCC-CcCCcccchhhhcCCCC
Confidence 44555555555442211 11345555555555544 3321111 1123455555555554 3332 122223445555
Q ss_pred CcEEEccccccccccc--ccccCCCceEEEccCCCCCHHHHHHHHHhC-CCccEEecCCCCCCChhhHHHHHhhCCCCcE
Q 046157 448 IKCLEIKRCRAVFDLG--IDLELPKLEVLQASGSALNDHALKMIANTC-SRILHLDLDNCLNVTTSGVKEVVEHCRTLRE 524 (577)
Q Consensus 448 L~~L~l~~~~~l~~~~--~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~-~~L~~L~l~~c~~l~~~~l~~~~~~~~~L~~ 524 (577)
|+.|++++|....... ....+++|+.|++++|.+++.... .+ ++|+.|++++| .++. +..-+..+++|+.
T Consensus 405 L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~----~l~~~L~~L~L~~N-~l~~--ip~~~~~l~~L~~ 477 (562)
T 3a79_B 405 LETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFR----CLPPKVKVLDLHNN-RIMS--IPKDVTHLQALQE 477 (562)
T ss_dssp CCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGS----SCCTTCSEEECCSS-CCCC--CCTTTTSSCCCSE
T ss_pred CCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhh----hhcCcCCEEECCCC-cCcc--cChhhcCCCCCCE
Confidence 5555555555221121 223445555555555555432211 11 35555555554 2432 1111124555555
Q ss_pred EEecCCCCCcHHHHHHHHHhCCCCceeccCC
Q 046157 525 INLRWCDEVNVDIVAWMVFSRPSLRKIIPPC 555 (577)
Q Consensus 525 L~l~~c~~~~~~~~~~~~~~~~~L~~l~~~~ 555 (577)
|+++++.-.. ........+++|+.|++++
T Consensus 478 L~L~~N~l~~--l~~~~~~~l~~L~~L~l~~ 506 (562)
T 3a79_B 478 LNVASNQLKS--VPDGVFDRLTSLQYIWLHD 506 (562)
T ss_dssp EECCSSCCCC--CCTTSTTTCTTCCCEECCS
T ss_pred EECCCCCCCC--CCHHHHhcCCCCCEEEecC
Confidence 5555542211 0001133455555555554
No 30
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.79 E-value=1.3e-21 Score=209.79 Aligned_cols=393 Identities=15% Similarity=0.071 Sum_probs=214.7
Q ss_pred cccCceecccCccCCchhHHHHHhhcCCCccEEeccCCCCcChhhHHHHHHcCCCCCeeecCCCccccchhHHHHHhhcC
Q 046157 64 FQNLKKIDLSEFQGDPNSILYLISRSGLDLESLNISNLKSFPFMGLKELGTKMKNLKELNCSKNFSFRDSDLIAVAETCE 143 (577)
Q Consensus 64 ~~~l~~l~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~ 143 (577)
.+++++|++++..-... .........+|+.|+++++.....-. ......+++|++|+++++. +... .......++
T Consensus 23 p~~l~~LdLs~N~i~~i--~~~~~~~l~~L~~LdLs~n~~~~~i~-~~~f~~L~~L~~L~Ls~N~-l~~~-~p~~~~~l~ 97 (844)
T 3j0a_A 23 LNTTERLLLSFNYIRTV--TASSFPFLEQLQLLELGSQYTPLTID-KEAFRNLPNLRILDLGSSK-IYFL-HPDAFQGLF 97 (844)
T ss_dssp CTTCCEEEEESCCCCEE--CSSSCSSCCSCSEEEECTTCCCCEEC-TTTTSSCTTCCEEECTTCC-CCEE-CTTSSCSCS
T ss_pred CCCcCEEECCCCcCCcc--ChhHCcccccCeEEeCCCCCCccccC-HHHhcCCCCCCEEECCCCc-Cccc-CHhHccCCc
Confidence 36788899887542110 00011235688999998774322110 1123467889999998763 2211 111223678
Q ss_pred CCcEeeccCCCCCCCCCCcCcccccccccccCHHHHHH-HHHcCccCcEEeccCCcccChhHHHHHHhcCCCCcEEEecc
Q 046157 144 FLEVLDISYPENDSSFLPQGFQNIQSFSFYITDSGIEA-LSMKLKRLKRINLSGNFFITDKSLMFLSSNLVLLREILIRD 222 (577)
Q Consensus 144 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~ 222 (577)
+|++|++++|. +++..... ....+++|++|+++++. ++..........+++|++|++++
T Consensus 98 ~L~~L~Ls~n~-------------------l~~~~~~~~~~~~L~~L~~L~Ls~N~-l~~~~~~~~~~~L~~L~~L~Ls~ 157 (844)
T 3j0a_A 98 HLFELRLYFCG-------------------LSDAVLKDGYFRNLKALTRLDLSKNQ-IRSLYLHPSFGKLNSLKSIDFSS 157 (844)
T ss_dssp SCCCEECTTCC-------------------CSSCCSTTCCCSSCSSCCEEEEESCC-CCCCCCCGGGGTCSSCCEEEEES
T ss_pred ccCEeeCcCCC-------------------CCcccccCccccccCCCCEEECCCCc-ccccccchhHhhCCCCCEEECCC
Confidence 89999998887 22211111 11257889999998863 32222222345688999999988
Q ss_pred CCCC--CHHHHHHHHhcCCCccEEEecCCCCCCcchhHHHHhhhhc------CCCEEEcCCCCCChHHHHHHHhc--CCC
Q 046157 223 CDFI--TQSGISFAMRNSPNLVSISVNGIGIPTIDSCFKESFAYAR------GLCEIDLSNSFISDELLRLLGEA--CLP 292 (577)
Q Consensus 223 ~~~~--~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~------~L~~L~l~~~~~~~~~l~~l~~~--~~~ 292 (577)
+... ....+..+.. ++|+.|++.++.+.... +..+..++ .|++|+++++.+.......+... .+.
T Consensus 158 N~i~~~~~~~l~~l~~--~~L~~L~L~~n~l~~~~---~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~ 232 (844)
T 3j0a_A 158 NQIFLVCEHELEPLQG--KTLSFFSLAANSLYSRV---SVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQ 232 (844)
T ss_dssp SCCCCCCSGGGHHHHH--CSSCCCEECCSBSCCCC---CCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCC
T ss_pred CcCCeeCHHHcccccC--CccceEECCCCcccccc---ccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCccc
Confidence 6421 2222222211 78899999887653211 11112222 48999999887655443333332 345
Q ss_pred CcEEEecCCCC--------CCHHHHHHHHh--cCCCcCeeecccccccChHHHHHHHhcCCCCCEEeecCCCCCChHHHH
Q 046157 293 LKKLVLSHCYN--------FTLAGISFLLS--KYQSLEHLNLEAANFLEDESMIDLSKFLTSLNFIDLGFCAKLTNSTFF 362 (577)
Q Consensus 293 L~~L~l~~~~~--------~~~~~l~~~~~--~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~ 362 (577)
++.+.+..+.. +....... +. ..++|+.|+++++. +.... ......+++|+.|+++++. ++...-
T Consensus 233 l~~L~l~~~~~~~~~~~~~l~~~~~~~-f~~l~~~~L~~L~Ls~n~-l~~~~-~~~~~~l~~L~~L~L~~n~-i~~~~~- 307 (844)
T 3j0a_A 233 AFSLILAHHIMGAGFGFHNIKDPDQNT-FAGLARSSVRHLDLSHGF-VFSLN-SRVFETLKDLKVLNLAYNK-INKIAD- 307 (844)
T ss_dssp BSEEECCSSCCBCSSSCSSSTTGGGTT-TTTTTTSCCCEEECTTCC-CCEEC-SCCSSSCCCCCEEEEESCC-CCEECT-
T ss_pred ccceecccccccccccccccCCCChhh-hhccccCCccEEECCCCc-ccccC-hhhhhcCCCCCEEECCCCc-CCCCCh-
Confidence 66776652111 11011000 11 13678888888776 32221 1112346788888888754 222111
Q ss_pred HHHhhCCCCCeEEeeeccCCCCcccccccCCCCccEEEcCCCCCCCHHHHHHHHhhCCCccEEecCCCCCCCHHHHHHHH
Q 046157 363 TILRECPLLSEIKMETTNLGLDDFTTPLVINPQVKSLHLARNGNLSDESLKKLAILCPNLEVIDLSHCLGITEEGIGEIL 442 (577)
Q Consensus 363 ~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~ 442 (577)
.....+++|+.|++++|.+.... ...+..+++|+.|++++|. +...... ....+++|+.|++++| .++. +
T Consensus 308 ~~~~~l~~L~~L~Ls~N~l~~~~-~~~~~~l~~L~~L~L~~N~-i~~~~~~-~~~~l~~L~~L~Ls~N-~l~~------i 377 (844)
T 3j0a_A 308 EAFYGLDNLQVLNLSYNLLGELY-SSNFYGLPKVAYIDLQKNH-IAIIQDQ-TFKFLEKLQTLDLRDN-ALTT------I 377 (844)
T ss_dssp TTTTTCSSCCEEEEESCCCSCCC-SCSCSSCTTCCEEECCSCC-CCCCCSS-CSCSCCCCCEEEEETC-CSCC------C
T ss_pred HHhcCCCCCCEEECCCCCCCccC-HHHhcCCCCCCEEECCCCC-CCccChh-hhcCCCCCCEEECCCC-CCCc------c
Confidence 11245788888888888765433 4567778888888888775 3322111 1234678888888887 3432 2
Q ss_pred hhCCCCcEEEcccccccccccccccCCCceEEEccCCCCCHHHHHHHHHhCCCccEEecCCC
Q 046157 443 KSCCEIKCLEIKRCRAVFDLGIDLELPKLEVLQASGSALNDHALKMIANTCSRILHLDLDNC 504 (577)
Q Consensus 443 ~~~~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~c 504 (577)
..+++|+.|.+++|. +... .....+++.|++++|.+++.........+++|+.|++++|
T Consensus 378 ~~~~~L~~L~l~~N~-l~~l--~~~~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N 436 (844)
T 3j0a_A 378 HFIPSIPDIFLSGNK-LVTL--PKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQN 436 (844)
T ss_dssp SSCCSCSEEEEESCC-CCCC--CCCCTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESC
T ss_pred cCCCCcchhccCCCC-cccc--cccccccceeecccCccccCchhhhhhcCCccceeeCCCC
Confidence 236778888887776 2222 1123455566666655554322222234556666666554
No 31
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.79 E-value=1.3e-21 Score=202.84 Aligned_cols=344 Identities=15% Similarity=0.115 Sum_probs=217.7
Q ss_pred cCccCcEEeccCCcccChh----------------HHHHHHh--cCCCCcEEEeccCCCCCHHHHHHHHhcCCCccEEEe
Q 046157 185 KLKRLKRINLSGNFFITDK----------------SLMFLSS--NLVLLREILIRDCDFITQSGISFAMRNSPNLVSISV 246 (577)
Q Consensus 185 ~~~~L~~L~l~~~~~~~~~----------------~~~~l~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l 246 (577)
.+++|++|+++++. ++.. .+..-.. .+++|++|+++++..... ++..+..+++|+.|++
T Consensus 204 ~l~~L~~L~Ls~n~-l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~--~p~~l~~l~~L~~L~L 280 (636)
T 4eco_A 204 RLTKLRQFYMGNSP-FVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTK--LPTFLKALPEMQLINV 280 (636)
T ss_dssp GCTTCCEEEEESCC-CCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSS--CCTTTTTCSSCCEEEC
T ss_pred cccCCCEEECcCCc-cccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCcc--ChHHHhcCCCCCEEEC
Confidence 67889999999864 4431 0222223 688999999998753321 1234567889999999
Q ss_pred cCCCCCCcch-hHHHHhhhh------cCCCEEEcCCCCCChHHHH-HHHhcCCCCcEEEecCCCCCCHHHHHHHHhcCCC
Q 046157 247 NGIGIPTIDS-CFKESFAYA------RGLCEIDLSNSFISDELLR-LLGEACLPLKKLVLSHCYNFTLAGISFLLSKYQS 318 (577)
Q Consensus 247 ~~~~~~~~~~-~~~~~~~~~------~~L~~L~l~~~~~~~~~l~-~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~ 318 (577)
.++.. +.. .++..+..+ ++|++|+++++.+. .... .....+++|+.|+++++..... +. .+..+++
T Consensus 281 s~n~~--l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~--ip-~~~~l~~ 354 (636)
T 4eco_A 281 ACNRG--ISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGK--LP-AFGSEIK 354 (636)
T ss_dssp TTCTT--SCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEE--CC-CCEEEEE
T ss_pred cCCCC--CccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccc--hh-hhCCCCC
Confidence 98751 223 455556554 89999999998776 2221 1334588999999988754311 11 2456788
Q ss_pred cCeeecccccccChHHHHHHHhcCCC-CCEEeecCCCCCChHHHHHHHhh--CCCCCeEEeeeccCCCCccccccc----
Q 046157 319 LEHLNLEAANFLEDESMIDLSKFLTS-LNFIDLGFCAKLTNSTFFTILRE--CPLLSEIKMETTNLGLDDFTTPLV---- 391 (577)
Q Consensus 319 L~~L~l~~~~~~~~~~~~~l~~~~~~-L~~L~l~~~~~~~~~~l~~l~~~--~~~L~~L~l~~~~~~~~~~~~~~~---- 391 (577)
|+.|+++++. ++ .+..-...+++ |+.|+++++. ++. +...... +++|+.|++++|.+.... +..+.
T Consensus 355 L~~L~L~~N~-l~--~lp~~l~~l~~~L~~L~Ls~N~-l~~--lp~~~~~~~l~~L~~L~Ls~N~l~~~~-p~~l~~~~~ 427 (636)
T 4eco_A 355 LASLNLAYNQ-IT--EIPANFCGFTEQVENLSFAHNK-LKY--IPNIFDAKSVSVMSAIDFSYNEIGSVD-GKNFDPLDP 427 (636)
T ss_dssp ESEEECCSSE-EE--ECCTTSEEECTTCCEEECCSSC-CSS--CCSCCCTTCSSCEEEEECCSSCTTTTT-TCSSCTTCS
T ss_pred CCEEECCCCc-cc--cccHhhhhhcccCcEEEccCCc-Ccc--cchhhhhcccCccCEEECcCCcCCCcc-hhhhccccc
Confidence 9999998887 33 11111233567 9999998865 321 1111112 348999999998875532 33333
Q ss_pred ---CCCCccEEEcCCCCCCCHHHHHHHHhhCCCccEEecCCCCCCCHHHHHHHHh-------hCCCCcEEEccccccccc
Q 046157 392 ---INPQVKSLHLARNGNLSDESLKKLAILCPNLEVIDLSHCLGITEEGIGEILK-------SCCEIKCLEIKRCRAVFD 461 (577)
Q Consensus 392 ---~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~-------~~~~L~~L~l~~~~~l~~ 461 (577)
.+++|+.|++++|. ++.. ...+...+++|+.|++++| .++... ...+. ++++|+.|++++|. ++.
T Consensus 428 ~~~~~~~L~~L~Ls~N~-l~~l-p~~~~~~l~~L~~L~Ls~N-~l~~i~-~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~ 502 (636)
T 4eco_A 428 TPFKGINVSSINLSNNQ-ISKF-PKELFSTGSPLSSINLMGN-MLTEIP-KNSLKDENENFKNTYLLTSIDLRFNK-LTK 502 (636)
T ss_dssp SCCCCCCEEEEECCSSC-CCSC-CTHHHHTTCCCSEEECCSS-CCSBCC-SSSSEETTEECTTGGGCCEEECCSSC-CCB
T ss_pred ccccCCCCCEEECcCCc-cCcC-CHHHHccCCCCCEEECCCC-CCCCcC-HHHhccccccccccCCccEEECcCCc-CCc
Confidence 67799999999876 4421 2234455789999999987 444211 11111 22389999999987 444
Q ss_pred cc-ccc--cCCCceEEEccCCCCCHHHHHHHHHhCCCccEEecCCCC-----CCChhhHHHHHhhCCCCcEEEecCCCCC
Q 046157 462 LG-IDL--ELPKLEVLQASGSALNDHALKMIANTCSRILHLDLDNCL-----NVTTSGVKEVVEHCRTLREINLRWCDEV 533 (577)
Q Consensus 462 ~~-~~~--~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~c~-----~l~~~~l~~~~~~~~~L~~L~l~~c~~~ 533 (577)
.. ... .+++|+.|++++|.++. +......+++|+.|++++|. .+... +...+..+++|++|++++|.--
T Consensus 503 lp~~~~~~~l~~L~~L~Ls~N~l~~--ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~-~p~~l~~l~~L~~L~Ls~N~l~ 579 (636)
T 4eco_A 503 LSDDFRATTLPYLVGIDLSYNSFSK--FPTQPLNSSTLKGFGIRNQRDAQGNRTLRE-WPEGITLCPSLTQLQIGSNDIR 579 (636)
T ss_dssp CCGGGSTTTCTTCCEEECCSSCCSS--CCCGGGGCSSCCEEECCSCBCTTCCBCCCC-CCTTGGGCSSCCEEECCSSCCC
T ss_pred cChhhhhccCCCcCEEECCCCCCCC--cChhhhcCCCCCEEECCCCcccccCccccc-ChHHHhcCCCCCEEECCCCcCC
Confidence 44 223 78999999999998876 22222357899999996543 12211 1222467899999999998542
Q ss_pred cHHHHHHHHHhCCCCceeccCCCC
Q 046157 534 NVDIVAWMVFSRPSLRKIIPPCGF 557 (577)
Q Consensus 534 ~~~~~~~~~~~~~~L~~l~~~~~~ 557 (577)
. +... -.++|+.|+++++.
T Consensus 580 ~---ip~~--~~~~L~~L~Ls~N~ 598 (636)
T 4eco_A 580 K---VNEK--ITPNISVLDIKDNP 598 (636)
T ss_dssp B---CCSC--CCTTCCEEECCSCT
T ss_pred c---cCHh--HhCcCCEEECcCCC
Confidence 1 1111 13789999998653
No 32
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.78 E-value=1.4e-17 Score=162.31 Aligned_cols=273 Identities=19% Similarity=0.179 Sum_probs=171.5
Q ss_pred CCCChHHHHHHH---hcCCCCcEEEecCCCCCCHHHHHH---HHhcCCCcCeeeccccc--ccCh---HHHHHH---Hhc
Q 046157 276 SFISDELLRLLG---EACLPLKKLVLSHCYNFTLAGISF---LLSKYQSLEHLNLEAAN--FLED---ESMIDL---SKF 341 (577)
Q Consensus 276 ~~~~~~~l~~l~---~~~~~L~~L~l~~~~~~~~~~l~~---~~~~~~~L~~L~l~~~~--~~~~---~~~~~l---~~~ 341 (577)
+.+++..+..+. ..+++|++|+++++. +...+... .+..+++|++|+++++. .+++ ..+..+ ...
T Consensus 14 ~~l~~~~~~~l~~~l~~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~ 92 (386)
T 2ca6_A 14 DAITTEDEKSVFAVLLEDDSVKEIVLSGNT-IGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLK 92 (386)
T ss_dssp SSCCSHHHHTTSHHHHHCSCCCEEECTTSE-ECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHHhcCCCccEEECCCCC-CCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhh
Confidence 445555554433 337889999998863 44443333 34467888888888763 1221 233222 234
Q ss_pred CCCCCEEeecCCCCCChH---HHHHHHhhCCCCCeEEeeeccCCCCc---ccccccCC---------CCccEEEcCCCCC
Q 046157 342 LTSLNFIDLGFCAKLTNS---TFFTILRECPLLSEIKMETTNLGLDD---FTTPLVIN---------PQVKSLHLARNGN 406 (577)
Q Consensus 342 ~~~L~~L~l~~~~~~~~~---~l~~l~~~~~~L~~L~l~~~~~~~~~---~~~~~~~~---------~~L~~L~l~~~~~ 406 (577)
+++|++|+++++. ++.. .+......+++|++|++++|.++... +...+..+ ++|++|++++|.
T Consensus 93 ~~~L~~L~Ls~n~-l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~- 170 (386)
T 2ca6_A 93 CPKLHTVRLSDNA-FGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNR- 170 (386)
T ss_dssp CTTCCEEECCSCC-CCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSC-
T ss_pred CCcccEEECCCCc-CCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCC-
Confidence 6888888888754 4443 23344567888888888888764322 11122233 788888888876
Q ss_pred CCHHHHHHH---HhhCCCccEEecCCCCCCCHHHHHHHH----hhCCCCcEEEccccccccccc------ccccCCCceE
Q 046157 407 LSDESLKKL---AILCPNLEVIDLSHCLGITEEGIGEIL----KSCCEIKCLEIKRCRAVFDLG------IDLELPKLEV 473 (577)
Q Consensus 407 l~~~~l~~l---~~~~~~L~~L~l~~~~~~~~~~~~~~~----~~~~~L~~L~l~~~~~l~~~~------~~~~~~~L~~ 473 (577)
+++..+..+ ...+++|++|++++| .+++.++..++ ..+++|+.|++++|. +++.+ ....+++|+.
T Consensus 171 l~~~~~~~l~~~l~~~~~L~~L~L~~n-~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~-l~~~g~~~l~~~l~~~~~L~~ 248 (386)
T 2ca6_A 171 LENGSMKEWAKTFQSHRLLHTVKMVQN-GIRPEGIEHLLLEGLAYCQELKVLDLQDNT-FTHLGSSALAIALKSWPNLRE 248 (386)
T ss_dssp CTGGGHHHHHHHHHHCTTCCEEECCSS-CCCHHHHHHHHHTTGGGCTTCCEEECCSSC-CHHHHHHHHHHHGGGCTTCCE
T ss_pred CCcHHHHHHHHHHHhCCCcCEEECcCC-CCCHhHHHHHHHHHhhcCCCccEEECcCCC-CCcHHHHHHHHHHccCCCcCE
Confidence 665555433 346788888888887 67776654443 477888888888887 43221 2346788888
Q ss_pred EEccCCCCCHHHHHHHHHh-----CCCccEEecCCCCCCChhhHHHHH----hhCCCCcEEEecCCCCCcHH-HHHHHHH
Q 046157 474 LQASGSALNDHALKMIANT-----CSRILHLDLDNCLNVTTSGVKEVV----EHCRTLREINLRWCDEVNVD-IVAWMVF 543 (577)
Q Consensus 474 L~l~~~~i~~~~~~~l~~~-----~~~L~~L~l~~c~~l~~~~l~~~~----~~~~~L~~L~l~~c~~~~~~-~~~~~~~ 543 (577)
|++++|.+++.+...+... +++|+.|++++|. ++..++..+. .++++|+.|++++|+-.... .+..+..
T Consensus 249 L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~-i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~~~~~~l~~ 327 (386)
T 2ca6_A 249 LGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNE-IELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDDVVDEIRE 327 (386)
T ss_dssp EECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSC-CBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTSHHHHHHHH
T ss_pred EECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCc-CCHHHHHHHHHHHHhcCCCceEEEccCCcCCcchhHHHHHHH
Confidence 8888888888766555442 6788888888864 7765443332 45788888888887544322 2455555
Q ss_pred hCCCCceeccC
Q 046157 544 SRPSLRKIIPP 554 (577)
Q Consensus 544 ~~~~L~~l~~~ 554 (577)
.+|+++.+.+.
T Consensus 328 ~l~~~~~~~l~ 338 (386)
T 2ca6_A 328 VFSTRGRGELD 338 (386)
T ss_dssp HHHHHTCCEEC
T ss_pred HhhhcCcchhh
Confidence 56666555443
No 33
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.78 E-value=1.8e-20 Score=197.38 Aligned_cols=133 Identities=10% Similarity=0.019 Sum_probs=62.5
Q ss_pred cCCCccEEEecCCCCCCcchhHHHHhhhhcCCCEEEcCCCC-CCh-HHHHHHHh------cCCCCcEEEecCCCCCCHHH
Q 046157 237 NSPNLVSISVNGIGIPTIDSCFKESFAYARGLCEIDLSNSF-ISD-ELLRLLGE------ACLPLKKLVLSHCYNFTLAG 308 (577)
Q Consensus 237 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~-~~l~~l~~------~~~~L~~L~l~~~~~~~~~~ 308 (577)
.+++|+.|++.++.+. ..++..+..+++|++|++++|. ++. .....+.. .+++|+.|+++++... .
T Consensus 489 ~L~~L~~L~Ls~N~l~---~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~---~ 562 (876)
T 4ecn_A 489 NLKDLTDVELYNCPNM---TQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE---E 562 (876)
T ss_dssp GCTTCCEEEEESCTTC---CSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC---B
T ss_pred cCCCCCEEECcCCCCC---ccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC---c
Confidence 5566666666665421 2223445566666666666665 554 22222221 2346666666665432 1
Q ss_pred HHH--HHhcCCCcCeeecccccccChHHHHHHHhcCCCCCEEeecCCCCCChHHHHHHHhhCCC-CCeEEeeeccCC
Q 046157 309 ISF--LLSKYQSLEHLNLEAANFLEDESMIDLSKFLTSLNFIDLGFCAKLTNSTFFTILRECPL-LSEIKMETTNLG 382 (577)
Q Consensus 309 l~~--~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~-L~~L~l~~~~~~ 382 (577)
++. .+..+++|+.|+++++. ++. +. ....+++|+.|+++++. +. .+..-...+++ |+.|++++|.+.
T Consensus 563 ip~~~~l~~L~~L~~L~Ls~N~-l~~--lp-~~~~L~~L~~L~Ls~N~-l~--~lp~~l~~l~~~L~~L~Ls~N~L~ 632 (876)
T 4ecn_A 563 FPASASLQKMVKLGLLDCVHNK-VRH--LE-AFGTNVKLTDLKLDYNQ-IE--EIPEDFCAFTDQVEGLGFSHNKLK 632 (876)
T ss_dssp CCCHHHHTTCTTCCEEECTTSC-CCB--CC-CCCTTSEESEEECCSSC-CS--CCCTTSCEECTTCCEEECCSSCCC
T ss_pred cCChhhhhcCCCCCEEECCCCC-ccc--ch-hhcCCCcceEEECcCCc-cc--cchHHHhhccccCCEEECcCCCCC
Confidence 211 24455666666666655 221 11 11224556666665543 21 11111223444 566666555544
No 34
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.78 E-value=6.2e-21 Score=197.64 Aligned_cols=326 Identities=12% Similarity=0.083 Sum_probs=219.1
Q ss_pred HhcCCCCcEEEeccCCCCCHH----------------HHHHHHh--cCCCccEEEecCCCCCCcchhHHHHhhhhcCCCE
Q 046157 209 SSNLVLLREILIRDCDFITQS----------------GISFAMR--NSPNLVSISVNGIGIPTIDSCFKESFAYARGLCE 270 (577)
Q Consensus 209 ~~~~~~L~~L~l~~~~~~~~~----------------~~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~ 270 (577)
...+++|++|+++++. ++.. .++..+. .+++|++|++.++.+. ..++..+..+++|++
T Consensus 202 l~~l~~L~~L~Ls~n~-l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~---~~~p~~l~~l~~L~~ 277 (636)
T 4eco_A 202 VMRLTKLRQFYMGNSP-FVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNL---TKLPTFLKALPEMQL 277 (636)
T ss_dssp GGGCTTCCEEEEESCC-CCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTC---SSCCTTTTTCSSCCE
T ss_pred HhcccCCCEEECcCCc-cccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCC---ccChHHHhcCCCCCE
Confidence 4568999999999875 3331 0233344 7899999999998642 234466788999999
Q ss_pred EEcCCCC-CCh-HHHHHHHh-----cCCCCcEEEecCCCCCCHHHHHH--HHhcCCCcCeeecccccccChHHHHHHHhc
Q 046157 271 IDLSNSF-ISD-ELLRLLGE-----ACLPLKKLVLSHCYNFTLAGISF--LLSKYQSLEHLNLEAANFLEDESMIDLSKF 341 (577)
Q Consensus 271 L~l~~~~-~~~-~~l~~l~~-----~~~~L~~L~l~~~~~~~~~~l~~--~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~ 341 (577)
|+++++. ++. .....+.. .+++|+.|+++++... .+.. .+..+++|+.|+++++. ++.. +. ....
T Consensus 278 L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~---~ip~~~~l~~l~~L~~L~L~~N~-l~g~-ip-~~~~ 351 (636)
T 4eco_A 278 INVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK---TFPVETSLQKMKKLGMLECLYNQ-LEGK-LP-AFGS 351 (636)
T ss_dssp EECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS---SCCCHHHHTTCTTCCEEECCSCC-CEEE-CC-CCEE
T ss_pred EECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC---ccCchhhhccCCCCCEEeCcCCc-Cccc-hh-hhCC
Confidence 9999998 887 45444443 2489999999987543 2322 46778999999999987 3311 11 2234
Q ss_pred CCCCCEEeecCCCCCChHHHHHHHhhCCC-CCeEEeeeccCCCCcccccccC--CCCccEEEcCCCCCCCHHHHHHHH--
Q 046157 342 LTSLNFIDLGFCAKLTNSTFFTILRECPL-LSEIKMETTNLGLDDFTTPLVI--NPQVKSLHLARNGNLSDESLKKLA-- 416 (577)
Q Consensus 342 ~~~L~~L~l~~~~~~~~~~l~~l~~~~~~-L~~L~l~~~~~~~~~~~~~~~~--~~~L~~L~l~~~~~l~~~~l~~l~-- 416 (577)
+++|+.|+++++. ++ .+..-...+++ |++|++++|.+.. .+..+.. +++|+.|++++|. +.......+.
T Consensus 352 l~~L~~L~L~~N~-l~--~lp~~l~~l~~~L~~L~Ls~N~l~~--lp~~~~~~~l~~L~~L~Ls~N~-l~~~~p~~l~~~ 425 (636)
T 4eco_A 352 EIKLASLNLAYNQ-IT--EIPANFCGFTEQVENLSFAHNKLKY--IPNIFDAKSVSVMSAIDFSYNE-IGSVDGKNFDPL 425 (636)
T ss_dssp EEEESEEECCSSE-EE--ECCTTSEEECTTCCEEECCSSCCSS--CCSCCCTTCSSCEEEEECCSSC-TTTTTTCSSCTT
T ss_pred CCCCCEEECCCCc-cc--cccHhhhhhcccCcEEEccCCcCcc--cchhhhhcccCccCEEECcCCc-CCCcchhhhccc
Confidence 6789999998864 22 11111345778 9999999998873 3444444 4489999999986 4332111111
Q ss_pred ----hhCCCccEEecCCCCCCCHHHHHHHHhhCCCCcEEEcccccccccccc-cc--------cCCCceEEEccCCCCCH
Q 046157 417 ----ILCPNLEVIDLSHCLGITEEGIGEILKSCCEIKCLEIKRCRAVFDLGI-DL--------ELPKLEVLQASGSALND 483 (577)
Q Consensus 417 ----~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~-~~--------~~~~L~~L~l~~~~i~~ 483 (577)
..+++|+.|++++| .++.. ...++..+++|+.|++++|. ++.... .+ .+++|+.|++++|.++.
T Consensus 426 ~~~~~~~~~L~~L~Ls~N-~l~~l-p~~~~~~l~~L~~L~Ls~N~-l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~ 502 (636)
T 4eco_A 426 DPTPFKGINVSSINLSNN-QISKF-PKELFSTGSPLSSINLMGNM-LTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTK 502 (636)
T ss_dssp CSSCCCCCCEEEEECCSS-CCCSC-CTHHHHTTCCCSEEECCSSC-CSBCCSSSSEETTEECTTGGGCCEEECCSSCCCB
T ss_pred ccccccCCCCCEEECcCC-ccCcC-CHHHHccCCCCCEEECCCCC-CCCcCHHHhccccccccccCCccEEECcCCcCCc
Confidence 03569999999998 45522 23446679999999999998 444331 11 12399999999998883
Q ss_pred HHHHHHH-HhCCCccEEecCCCCCCChhhHHHHHhhCCCCcEEEecCCCCCc----HHHHHHHHHhCCCCceeccCCCC
Q 046157 484 HALKMIA-NTCSRILHLDLDNCLNVTTSGVKEVVEHCRTLREINLRWCDEVN----VDIVAWMVFSRPSLRKIIPPCGF 557 (577)
Q Consensus 484 ~~~~~l~-~~~~~L~~L~l~~c~~l~~~~l~~~~~~~~~L~~L~l~~c~~~~----~~~~~~~~~~~~~L~~l~~~~~~ 557 (577)
.. ..+. ..+++|+.|++++|. ++. +..-+..+++|+.|+++++..+. ...+...+..+++|+.|+++.+.
T Consensus 503 lp-~~~~~~~l~~L~~L~Ls~N~-l~~--ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~ 577 (636)
T 4eco_A 503 LS-DDFRATTLPYLVGIDLSYNS-FSK--FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSND 577 (636)
T ss_dssp CC-GGGSTTTCTTCCEEECCSSC-CSS--CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSC
T ss_pred cC-hhhhhccCCCcCEEECCCCC-CCC--cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCc
Confidence 22 1221 267999999999975 654 33334679999999997643110 01122334579999999998654
No 35
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.78 E-value=2.5e-20 Score=196.30 Aligned_cols=343 Identities=13% Similarity=0.077 Sum_probs=203.6
Q ss_pred HHcCCCCCeeecCCCccccch----------------hHHHHHh--hcCCCcEeeccCCCCCCCCCCcCccccccccccc
Q 046157 113 GTKMKNLKELNCSKNFSFRDS----------------DLIAVAE--TCEFLEVLDISYPENDSSFLPQGFQNIQSFSFYI 174 (577)
Q Consensus 113 ~~~~~~L~~L~l~~~~~~~~~----------------~l~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l 174 (577)
...+++|+.|+++++. +... .+..-.. .+++|++|++++|..
T Consensus 444 l~~L~~L~~L~Ls~N~-Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l------------------- 503 (876)
T 4ecn_A 444 IQRLTKLQIIYFANSP-FTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPN------------------- 503 (876)
T ss_dssp GGGCTTCCEEEEESCC-CCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTT-------------------
T ss_pred HhcCCCCCEEECcCCc-CCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCC-------------------
Confidence 4567888888887763 3321 1222222 678888888888862
Q ss_pred CHHHHHHHHHcCccCcEEeccCCcccCh-hH---HHHHH---hcCCCCcEEEeccCCCCCHHHHHH--HHhcCCCccEEE
Q 046157 175 TDSGIEALSMKLKRLKRINLSGNFFITD-KS---LMFLS---SNLVLLREILIRDCDFITQSGISF--AMRNSPNLVSIS 245 (577)
Q Consensus 175 ~~~~~~~l~~~~~~L~~L~l~~~~~~~~-~~---~~~l~---~~~~~L~~L~l~~~~~~~~~~~~~--~~~~~~~L~~L~ 245 (577)
....-..+ ..+++|+.|+++++..++. .. +..+. ..+++|++|+++++... .++. .+..+++|+.|+
T Consensus 504 ~~~iP~~l-~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~---~ip~~~~l~~L~~L~~L~ 579 (876)
T 4ecn_A 504 MTQLPDFL-YDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE---EFPASASLQKMVKLGLLD 579 (876)
T ss_dssp CCSCCGGG-GGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC---BCCCHHHHTTCTTCCEEE
T ss_pred CccChHHH-hCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC---ccCChhhhhcCCCCCEEE
Confidence 11111122 2678899999988643554 22 22221 23568999998886432 2223 456788899999
Q ss_pred ecCCCCCCcchhHHHHhhhhcCCCEEEcCCCCCChHHHHHHHhcCCC-CcEEEecCCCCCCHHHHHHHHhcC--CCcCee
Q 046157 246 VNGIGIPTIDSCFKESFAYARGLCEIDLSNSFISDELLRLLGEACLP-LKKLVLSHCYNFTLAGISFLLSKY--QSLEHL 322 (577)
Q Consensus 246 l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~-L~~L~l~~~~~~~~~~l~~~~~~~--~~L~~L 322 (577)
+.++.+..++ .+..+++|+.|++++|.+.. +..-...+++ |+.|+++++.... ++..+... ++|+.|
T Consensus 580 Ls~N~l~~lp-----~~~~L~~L~~L~Ls~N~l~~--lp~~l~~l~~~L~~L~Ls~N~L~~---lp~~~~~~~~~~L~~L 649 (876)
T 4ecn_A 580 CVHNKVRHLE-----AFGTNVKLTDLKLDYNQIEE--IPEDFCAFTDQVEGLGFSHNKLKY---IPNIFNAKSVYVMGSV 649 (876)
T ss_dssp CTTSCCCBCC-----CCCTTSEESEEECCSSCCSC--CCTTSCEECTTCCEEECCSSCCCS---CCSCCCTTCSSCEEEE
T ss_pred CCCCCcccch-----hhcCCCcceEEECcCCcccc--chHHHhhccccCCEEECcCCCCCc---CchhhhccccCCCCEE
Confidence 9888764322 66788889999998887661 2111233667 8999988875331 22212222 348888
Q ss_pred ecccccccChHHHHHHH-----hcCCCCCEEeecCCCCCChHHHHHHHhhCCCCCeEEeeeccCCCCcccccc-------
Q 046157 323 NLEAANFLEDESMIDLS-----KFLTSLNFIDLGFCAKLTNSTFFTILRECPLLSEIKMETTNLGLDDFTTPL------- 390 (577)
Q Consensus 323 ~l~~~~~~~~~~~~~l~-----~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~------- 390 (577)
+++++. +.... ..+. -.+++|+.|+++++. ++.. -..+...+++|+.|++++|.+..- +...
T Consensus 650 ~Ls~N~-l~g~i-p~l~~~l~~~~~~~L~~L~Ls~N~-L~~l-p~~~~~~l~~L~~L~Ls~N~L~~i--p~~~~~~~~~~ 723 (876)
T 4ecn_A 650 DFSYNK-IGSEG-RNISCSMDDYKGINASTVTLSYNE-IQKF-PTELFATGSPISTIILSNNLMTSI--PENSLKPKDGN 723 (876)
T ss_dssp ECCSSC-TTTTS-SSCSSCTTTCCCCCEEEEECCSSC-CCSC-CHHHHHTTCCCSEEECCSCCCSCC--CTTSSSCTTSC
T ss_pred ECcCCc-CCCcc-ccchhhhccccCCCcCEEEccCCc-CCcc-CHHHHccCCCCCEEECCCCcCCcc--ChHHhcccccc
Confidence 888877 32210 0000 013478888888865 3311 122344688899999988877622 2221
Q ss_pred -cCCCCccEEEcCCCCCCCHHHHHHHH--hhCCCccEEecCCCCCCCHHHHHHHHhhCCCCcEEEcccccc------ccc
Q 046157 391 -VINPQVKSLHLARNGNLSDESLKKLA--ILCPNLEVIDLSHCLGITEEGIGEILKSCCEIKCLEIKRCRA------VFD 461 (577)
Q Consensus 391 -~~~~~L~~L~l~~~~~l~~~~l~~l~--~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~------l~~ 461 (577)
.++++|+.|++++|. ++. +.... ..+++|+.|++++| .++. +...+..+++|+.|++++|+. ...
T Consensus 724 l~nl~~L~~L~Ls~N~-L~~--lp~~l~~~~l~~L~~L~Ls~N-~L~~--lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ 797 (876)
T 4ecn_A 724 YKNTYLLTTIDLRFNK-LTS--LSDDFRATTLPYLSNMDVSYN-CFSS--FPTQPLNSSQLKAFGIRHQRDAEGNRILRQ 797 (876)
T ss_dssp CTTGGGCCEEECCSSC-CCC--CCGGGSTTTCTTCCEEECCSS-CCSS--CCCGGGGCTTCCEEECCCCBCTTCCBCCCC
T ss_pred ccccCCccEEECCCCC-Ccc--chHHhhhccCCCcCEEEeCCC-CCCc--cchhhhcCCCCCEEECCCCCCccccccccc
Confidence 223488888888875 442 21122 25788888888887 4443 233355788888888877441 111
Q ss_pred cc-ccccCCCceEEEccCCCCCHHHHHHHHHhCCCccEEecCCCC
Q 046157 462 LG-IDLELPKLEVLQASGSALNDHALKMIANTCSRILHLDLDNCL 505 (577)
Q Consensus 462 ~~-~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~c~ 505 (577)
.. ....+++|+.|++++|.++..... .+++|+.|++++|+
T Consensus 798 ip~~l~~L~~L~~L~Ls~N~L~~Ip~~----l~~~L~~LdLs~N~ 838 (876)
T 4ecn_A 798 WPTGITTCPSLIQLQIGSNDIRKVDEK----LTPQLYILDIADNP 838 (876)
T ss_dssp CCTTGGGCSSCCEEECCSSCCCBCCSC----CCSSSCEEECCSCT
T ss_pred ChHHHhcCCCCCEEECCCCCCCccCHh----hcCCCCEEECCCCC
Confidence 11 234577888888888777432111 13578888888775
No 36
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.77 E-value=1.1e-19 Score=186.46 Aligned_cols=420 Identities=15% Similarity=0.049 Sum_probs=259.8
Q ss_pred cCceecccCccCCchhHHHHHhhcCCCccEEeccCCCCcChhhHHHHHHcCCCCCeeecCCCccccchhHHHHHhhcCCC
Q 046157 66 NLKKIDLSEFQGDPNSILYLISRSGLDLESLNISNLKSFPFMGLKELGTKMKNLKELNCSKNFSFRDSDLIAVAETCEFL 145 (577)
Q Consensus 66 ~l~~l~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L 145 (577)
..+.+++++..-..-+ ...+++++.|+++++.. .... ......+++|++|+++++ .+.... ......+++|
T Consensus 32 ~~~~l~ls~~~L~~ip-----~~~~~~L~~L~Ls~N~i-~~~~-~~~~~~l~~L~~L~Ls~N-~l~~~~-~~~~~~l~~L 102 (562)
T 3a79_B 32 LESMVDYSNRNLTHVP-----KDLPPRTKALSLSQNSI-SELR-MPDISFLSELRVLRLSHN-RIRSLD-FHVFLFNQDL 102 (562)
T ss_dssp -CCEEECTTSCCCSCC-----TTSCTTCCEEECCSSCC-CCCC-GGGTTTCTTCCEEECCSC-CCCEEC-TTTTTTCTTC
T ss_pred CCcEEEcCCCCCccCC-----CCCCCCcCEEECCCCCc-cccC-hhhhccCCCccEEECCCC-CCCcCC-HHHhCCCCCC
Confidence 3477888766422111 11247899999998752 2111 012346789999999887 332211 1123367899
Q ss_pred cEeeccCCCCCCCCCCcCcccccccccccCHHHHHHHHHcCccCcEEeccCCcccChhHHHHHHhcCCCCcEEEeccCCC
Q 046157 146 EVLDISYPENDSSFLPQGFQNIQSFSFYITDSGIEALSMKLKRLKRINLSGNFFITDKSLMFLSSNLVLLREILIRDCDF 225 (577)
Q Consensus 146 ~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~ 225 (577)
++|++++|. ++. +... .+++|++|+++++. ++.-........+++|++|+++++.
T Consensus 103 ~~L~Ls~N~-------------------l~~--lp~~--~l~~L~~L~Ls~N~-l~~l~~p~~~~~l~~L~~L~L~~n~- 157 (562)
T 3a79_B 103 EYLDVSHNR-------------------LQN--ISCC--PMASLRHLDLSFND-FDVLPVCKEFGNLTKLTFLGLSAAK- 157 (562)
T ss_dssp CEEECTTSC-------------------CCE--ECSC--CCTTCSEEECCSSC-CSBCCCCGGGGGCTTCCEEEEECSB-
T ss_pred CEEECCCCc-------------------CCc--cCcc--ccccCCEEECCCCC-ccccCchHhhcccCcccEEecCCCc-
Confidence 999999998 332 1111 57899999999863 3321221234568999999999864
Q ss_pred CCHHHHHHHHhcCCCc--cEEEecCCCC--CCcchhHH-----------------------HHhhhhcCCCEEEcCCCCC
Q 046157 226 ITQSGISFAMRNSPNL--VSISVNGIGI--PTIDSCFK-----------------------ESFAYARGLCEIDLSNSFI 278 (577)
Q Consensus 226 ~~~~~~~~~~~~~~~L--~~L~l~~~~~--~~~~~~~~-----------------------~~~~~~~~L~~L~l~~~~~ 278 (577)
+.... +..+++| +.|++.++.+ ........ ..+..+++|+.++++++..
T Consensus 158 l~~~~----~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~ 233 (562)
T 3a79_B 158 FRQLD----LLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDE 233 (562)
T ss_dssp CCTTT----TGGGTTSCEEEEEEEESSCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCST
T ss_pred cccCc----hhhhhhceeeEEEeecccccccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEeccccccc
Confidence 33322 2345566 9999998765 21111000 0122466788888888753
Q ss_pred ChHHHHH---HHhcCCCCcEEEecCCCCCCHHHHHHHH--hcCCCcCeeecccccccCh---------------------
Q 046157 279 SDELLRL---LGEACLPLKKLVLSHCYNFTLAGISFLL--SKYQSLEHLNLEAANFLED--------------------- 332 (577)
Q Consensus 279 ~~~~l~~---l~~~~~~L~~L~l~~~~~~~~~~l~~~~--~~~~~L~~L~l~~~~~~~~--------------------- 332 (577)
....+.. .....++++.+++.++. .....+..+. ...++|++|+++++. +++
T Consensus 234 ~~~~l~~~~~~l~~l~~L~~L~L~~~~-l~~~~~~~~~~~~~~~~L~~L~l~~n~-l~~~ip~~~~~~~~~~L~~L~~~~ 311 (562)
T 3a79_B 234 NCQRLMTFLSELTRGPTLLNVTLQHIE-TTWKCSVKLFQFFWPRPVEYLNIYNLT-ITERIDREEFTYSETALKSLMIEH 311 (562)
T ss_dssp THHHHHHHHHHHHSCSSCEEEEEEEEE-ECHHHHHHHHHHHTTSSEEEEEEEEEE-ECSCCCCCCCCCCSCSCCEEEEEE
T ss_pred ccchHHHHHHHHhccCcceEEEecCCc-CcHHHHHHHHHhhhcccccEEEEeccE-eeccccchhhhcccccchheehhh
Confidence 3222221 22347888999888754 3333333322 234589999998876 221
Q ss_pred ----------HHHHHHHhcCCCCCEEeecCCCCCChHHHHHHHhhCCCCCeEEeeeccCCCCcccccccCCCCccEEEcC
Q 046157 333 ----------ESMIDLSKFLTSLNFIDLGFCAKLTNSTFFTILRECPLLSEIKMETTNLGLDDFTTPLVINPQVKSLHLA 402 (577)
Q Consensus 333 ----------~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~ 402 (577)
..+..+.. ..+|+.|+++++. +....+ ...+++|++|++++|.+.... +..+..+++|+.|+++
T Consensus 312 ~~~~~~~~p~~~~~~~~~-~~~L~~L~l~~n~-~~~~~~---~~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~L~ 385 (562)
T 3a79_B 312 VKNQVFLFSKEALYSVFA-EMNIKMLSISDTP-FIHMVC---PPSPSSFTFLNFTQNVFTDSV-FQGCSTLKRLQTLILQ 385 (562)
T ss_dssp EEECCCSSCHHHHHHHHH-TCCCSEEEEESSC-CCCCCC---CSSCCCCCEEECCSSCCCTTT-TTTCCSCSSCCEEECC
T ss_pred cccceeecChhhhhhhhc-cCcceEEEccCCC-cccccC---ccCCCCceEEECCCCccccch-hhhhcccCCCCEEECC
Confidence 11222221 2457777777654 221110 146899999999999887533 5677899999999999
Q ss_pred CCCCCCHH-HHHHHHhhCCCccEEecCCCCCCCHHHHHHHHhhCCCCcEEEcccccccccccccccCCCceEEEccCCCC
Q 046157 403 RNGNLSDE-SLKKLAILCPNLEVIDLSHCLGITEEGIGEILKSCCEIKCLEIKRCRAVFDLGIDLELPKLEVLQASGSAL 481 (577)
Q Consensus 403 ~~~~l~~~-~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~i 481 (577)
+|. ++.. .+......+++|+.|++++|. ++.......+..+++|+.|++++|. ++......-.++|+.|++++|.+
T Consensus 386 ~N~-l~~~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~l~~~L~~L~L~~N~l 462 (562)
T 3a79_B 386 RNG-LKNFFKVALMTKNMSSLETLDVSLNS-LNSHAYDRTCAWAESILVLNLSSNM-LTGSVFRCLPPKVKVLDLHNNRI 462 (562)
T ss_dssp SSC-CCBTTHHHHTTTTCTTCCEEECTTSC-CBSCCSSCCCCCCTTCCEEECCSSC-CCGGGGSSCCTTCSEEECCSSCC
T ss_pred CCC-cCCcccchhhhcCCCCCCEEECCCCc-CCCccChhhhcCcccCCEEECCCCC-CCcchhhhhcCcCCEEECCCCcC
Confidence 986 5542 233334568999999999984 4431111234567999999999998 43322221127999999999988
Q ss_pred CHHHHHHHHHhCCCccEEecCCCCCCChhhHHHHHhhCCCCcEEEecCCCCCcHHHH
Q 046157 482 NDHALKMIANTCSRILHLDLDNCLNVTTSGVKEVVEHCRTLREINLRWCDEVNVDIV 538 (577)
Q Consensus 482 ~~~~~~~l~~~~~~L~~L~l~~c~~l~~~~l~~~~~~~~~L~~L~l~~c~~~~~~~~ 538 (577)
+... ..+. .+++|+.|++++|. ++..... .+..+++|+.|++++++-..+-..
T Consensus 463 ~~ip-~~~~-~l~~L~~L~L~~N~-l~~l~~~-~~~~l~~L~~L~l~~N~~~c~c~~ 515 (562)
T 3a79_B 463 MSIP-KDVT-HLQALQELNVASNQ-LKSVPDG-VFDRLTSLQYIWLHDNPWDCTCPG 515 (562)
T ss_dssp CCCC-TTTT-SSCCCSEEECCSSC-CCCCCTT-STTTCTTCCCEECCSCCBCCCHHH
T ss_pred cccC-hhhc-CCCCCCEEECCCCC-CCCCCHH-HHhcCCCCCEEEecCCCcCCCcch
Confidence 7421 1122 67899999999974 6642222 257889999999999987654333
No 37
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.77 E-value=1.1e-19 Score=181.73 Aligned_cols=353 Identities=14% Similarity=0.059 Sum_probs=220.3
Q ss_pred CCCcEeeccCCCCCCCCCCcCcccccccccccCHHHHHHHHHcCccCcEEeccCCcccChhHHHHHHhcCCCCcEEEecc
Q 046157 143 EFLEVLDISYPENDSSFLPQGFQNIQSFSFYITDSGIEALSMKLKRLKRINLSGNFFITDKSLMFLSSNLVLLREILIRD 222 (577)
Q Consensus 143 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~ 222 (577)
++|++|+++++. ++......+. .+++|++|+++++... .......+..+++|++|++++
T Consensus 30 ~~l~~L~Ls~n~-------------------i~~~~~~~~~-~l~~L~~L~L~~n~~~-~~i~~~~~~~l~~L~~L~Ls~ 88 (455)
T 3v47_A 30 AHVNYVDLSLNS-------------------IAELNETSFS-RLQDLQFLKVEQQTPG-LVIRNNTFRGLSSLIILKLDY 88 (455)
T ss_dssp TTCCEEECCSSC-------------------CCEECTTTTS-SCTTCCEEECCCCSTT-CEECTTTTTTCTTCCEEECTT
T ss_pred CccCEEEecCCc-------------------cCcCChhHhc-cCccccEEECcCCccc-ceECcccccccccCCEEeCCC
Confidence 578889988887 3322111222 6788999999886321 111112234588999999988
Q ss_pred CCCCCHHHHHHHHhcCCCccEEEecCCCCCCcchhHHHH--hhhhcCCCEEEcCCCCCChHHHHHHHhcCCCCcEEEecC
Q 046157 223 CDFITQSGISFAMRNSPNLVSISVNGIGIPTIDSCFKES--FAYARGLCEIDLSNSFISDELLRLLGEACLPLKKLVLSH 300 (577)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~ 300 (577)
+..... ....+..+++|++|++.++.+ ....+.. +..+++|++|+++++.+.......+...+++|+.|++++
T Consensus 89 n~l~~~--~~~~~~~l~~L~~L~L~~n~l---~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~ 163 (455)
T 3v47_A 89 NQFLQL--ETGAFNGLANLEVLTLTQCNL---DGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTF 163 (455)
T ss_dssp CTTCEE--CTTTTTTCTTCCEEECTTSCC---BTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTT
T ss_pred CccCcc--ChhhccCcccCCEEeCCCCCC---CccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCC
Confidence 653211 112346688999999998764 2333333 678889999999998776543333345588999999988
Q ss_pred CCCCC--HHHHHHHHhcCCCcCeeecccccccChHHH-----HHH--HhcCCCCCEEeecCCCCCChHHHHHHHhh--CC
Q 046157 301 CYNFT--LAGISFLLSKYQSLEHLNLEAANFLEDESM-----IDL--SKFLTSLNFIDLGFCAKLTNSTFFTILRE--CP 369 (577)
Q Consensus 301 ~~~~~--~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~-----~~l--~~~~~~L~~L~l~~~~~~~~~~l~~l~~~--~~ 369 (577)
+.... ...+.. -..++|+.|+++++. +.+... ... ...+++|+.|+++++. ++......+... .+
T Consensus 164 n~l~~~~~~~l~~--l~~~~L~~L~l~~n~-l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~-l~~~~~~~~~~~~~~~ 239 (455)
T 3v47_A 164 NKVKSICEEDLLN--FQGKHFTLLRLSSIT-LQDMNEYWLGWEKCGNPFKNTSITTLDLSGNG-FKESMAKRFFDAIAGT 239 (455)
T ss_dssp CCBSCCCTTTSGG--GTTCEEEEEECTTCB-CTTCSTTCTTHHHHCCTTTTCEEEEEECTTSC-CCHHHHHHHHHHTTTC
T ss_pred CcccccChhhhhc--cccccccccccccCc-ccccchhhccccccccccccceeeeEecCCCc-ccccchhhhhcccccc
Confidence 75322 111111 012578888888776 222110 000 0124678889888854 554444333322 47
Q ss_pred CCCeEEeeeccCCCCcc-----------cccccCCCCccEEEcCCCCCCCHHHHHHHHhhCCCccEEecCCCCCCCHHHH
Q 046157 370 LLSEIKMETTNLGLDDF-----------TTPLVINPQVKSLHLARNGNLSDESLKKLAILCPNLEVIDLSHCLGITEEGI 438 (577)
Q Consensus 370 ~L~~L~l~~~~~~~~~~-----------~~~~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~ 438 (577)
+|+.|++.++....... .......++|+.|+++++. +...... ....+++|+.|++++| .++...
T Consensus 240 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~-~~~~l~~L~~L~Ls~n-~l~~~~- 315 (455)
T 3v47_A 240 KIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSK-IFALLKS-VFSHFTDLEQLTLAQN-EINKID- 315 (455)
T ss_dssp CEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSC-CCEECTT-TTTTCTTCCEEECTTS-CCCEEC-
T ss_pred ceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCcc-ccccchh-hcccCCCCCEEECCCC-cccccC-
Confidence 88888888764332210 0111234789999999876 4432211 2345789999999987 455322
Q ss_pred HHHHhhCCCCcEEEccccccccccc--ccccCCCceEEEccCCCCCHHHHHHHHHhCCCccEEecCCCCCCChhhHHHHH
Q 046157 439 GEILKSCCEIKCLEIKRCRAVFDLG--IDLELPKLEVLQASGSALNDHALKMIANTCSRILHLDLDNCLNVTTSGVKEVV 516 (577)
Q Consensus 439 ~~~~~~~~~L~~L~l~~~~~l~~~~--~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~c~~l~~~~l~~~~ 516 (577)
...+..+++|+.|++++|. ++... ....+++|++|++++|.++......+ ..+++|++|++++|. ++.... ..+
T Consensus 316 ~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~-~~l~~L~~L~L~~N~-l~~~~~-~~~ 391 (455)
T 3v47_A 316 DNAFWGLTHLLKLNLSQNF-LGSIDSRMFENLDKLEVLDLSYNHIRALGDQSF-LGLPNLKELALDTNQ-LKSVPD-GIF 391 (455)
T ss_dssp TTTTTTCTTCCEEECCSSC-CCEECGGGGTTCTTCCEEECCSSCCCEECTTTT-TTCTTCCEEECCSSC-CSCCCT-TTT
T ss_pred hhHhcCcccCCEEECCCCc-cCCcChhHhcCcccCCEEECCCCcccccChhhc-cccccccEEECCCCc-cccCCH-hHh
Confidence 1235678999999999997 44432 34578999999999998876433333 257899999999964 664332 234
Q ss_pred hhCCCCcEEEecCCCCC
Q 046157 517 EHCRTLREINLRWCDEV 533 (577)
Q Consensus 517 ~~~~~L~~L~l~~c~~~ 533 (577)
..+++|+.|++++++-.
T Consensus 392 ~~l~~L~~L~l~~N~l~ 408 (455)
T 3v47_A 392 DRLTSLQKIWLHTNPWD 408 (455)
T ss_dssp TTCTTCCEEECCSSCBC
T ss_pred ccCCcccEEEccCCCcc
Confidence 77899999999987544
No 38
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.76 E-value=2.7e-19 Score=178.85 Aligned_cols=355 Identities=14% Similarity=0.081 Sum_probs=222.4
Q ss_pred ccCcEEeccCCcccChhHHHHHHhcCCCCcEEEeccCCCCCHHHHHHHHhcCCCccEEEecCCCCCCcchhHHHHhhhhc
Q 046157 187 KRLKRINLSGNFFITDKSLMFLSSNLVLLREILIRDCDFITQSGISFAMRNSPNLVSISVNGIGIPTIDSCFKESFAYAR 266 (577)
Q Consensus 187 ~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 266 (577)
++|++|+++++ .++... ......+++|++|+++++...... ....+..+++|++|++.++.+... .+..+..++
T Consensus 30 ~~l~~L~Ls~n-~i~~~~-~~~~~~l~~L~~L~L~~n~~~~~i-~~~~~~~l~~L~~L~Ls~n~l~~~---~~~~~~~l~ 103 (455)
T 3v47_A 30 AHVNYVDLSLN-SIAELN-ETSFSRLQDLQFLKVEQQTPGLVI-RNNTFRGLSSLIILKLDYNQFLQL---ETGAFNGLA 103 (455)
T ss_dssp TTCCEEECCSS-CCCEEC-TTTTSSCTTCCEEECCCCSTTCEE-CTTTTTTCTTCCEEECTTCTTCEE---CTTTTTTCT
T ss_pred CccCEEEecCC-ccCcCC-hhHhccCccccEEECcCCcccceE-CcccccccccCCEEeCCCCccCcc---ChhhccCcc
Confidence 67999999986 333221 122356899999999987532111 012346689999999999875332 344567889
Q ss_pred CCCEEEcCCCCCChHHHHH-HHhcCCCCcEEEecCCCCCCHHHHHHHHhcCCCcCeeecccccccChHHHHHHHh-cCCC
Q 046157 267 GLCEIDLSNSFISDELLRL-LGEACLPLKKLVLSHCYNFTLAGISFLLSKYQSLEHLNLEAANFLEDESMIDLSK-FLTS 344 (577)
Q Consensus 267 ~L~~L~l~~~~~~~~~l~~-l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~-~~~~ 344 (577)
+|++|+++++.+....+.. ....+++|++|+++++..... .-..++..+++|++|+++++. +.......+.. ..++
T Consensus 104 ~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~l~~l~~~~ 181 (455)
T 3v47_A 104 NLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKI-QPASFFLNMRRFHVLDLTFNK-VKSICEEDLLNFQGKH 181 (455)
T ss_dssp TCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSC-CCCGGGGGCTTCCEEECTTCC-BSCCCTTTSGGGTTCE
T ss_pred cCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCcc-CcccccCCCCcccEEeCCCCc-ccccChhhhhcccccc
Confidence 9999999999887654432 133478999999988754321 011124567899999998876 33222111111 1257
Q ss_pred CCEEeecCCCC--CChHHHH--H--HHhhCCCCCeEEeeeccCCCCc--ccccccCCCCccEEEcCCCCCCCHHH-----
Q 046157 345 LNFIDLGFCAK--LTNSTFF--T--ILRECPLLSEIKMETTNLGLDD--FTTPLVINPQVKSLHLARNGNLSDES----- 411 (577)
Q Consensus 345 L~~L~l~~~~~--~~~~~l~--~--l~~~~~~L~~L~l~~~~~~~~~--~~~~~~~~~~L~~L~l~~~~~l~~~~----- 411 (577)
|+.|+++++.- +....+. . -...+++|++|++++|.+.... ........++|+.|+++++.......
T Consensus 182 L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~ 261 (455)
T 3v47_A 182 FTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNF 261 (455)
T ss_dssp EEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSS
T ss_pred ccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhh
Confidence 78888877551 1111110 0 0123467888888887654322 11112234778888887764221100
Q ss_pred -----HHHHHhhCCCccEEecCCCCCCCHHHHHHHHhhCCCCcEEEccccccccccc--ccccCCCceEEEccCCCCCHH
Q 046157 412 -----LKKLAILCPNLEVIDLSHCLGITEEGIGEILKSCCEIKCLEIKRCRAVFDLG--IDLELPKLEVLQASGSALNDH 484 (577)
Q Consensus 412 -----l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~--~~~~~~~L~~L~l~~~~i~~~ 484 (577)
........++|+.|+++++ .++.. ....+..+++|+.|++++|. +.... ....+++|++|++++|.++..
T Consensus 262 ~~~~~~~~~~~~~~~L~~L~l~~n-~l~~~-~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~~ 338 (455)
T 3v47_A 262 KDPDNFTFKGLEASGVKTCDLSKS-KIFAL-LKSVFSHFTDLEQLTLAQNE-INKIDDNAFWGLTHLLKLNLSQNFLGSI 338 (455)
T ss_dssp CCCCTTTTGGGTTSCCCEEECCSS-CCCEE-CTTTTTTCTTCCEEECTTSC-CCEECTTTTTTCTTCCEEECCSSCCCEE
T ss_pred ccCcccccccccccCceEEEecCc-ccccc-chhhcccCCCCCEEECCCCc-ccccChhHhcCcccCCEEECCCCccCCc
Confidence 0000112468999999987 45432 22336778999999999998 44432 345789999999999988764
Q ss_pred HHHHHHHhCCCccEEecCCCCCCChhhHHHHHhhCCCCcEEEecCCCCCcHHHHHHHHHhCCCCceeccCCCC
Q 046157 485 ALKMIANTCSRILHLDLDNCLNVTTSGVKEVVEHCRTLREINLRWCDEVNVDIVAWMVFSRPSLRKIIPPCGF 557 (577)
Q Consensus 485 ~~~~l~~~~~~L~~L~l~~c~~l~~~~l~~~~~~~~~L~~L~l~~c~~~~~~~~~~~~~~~~~L~~l~~~~~~ 557 (577)
....+ ..+++|+.|++++|. ++..... .+.++++|++|++++|.-.. ........+++|+.|+++++.
T Consensus 339 ~~~~~-~~l~~L~~L~Ls~N~-l~~~~~~-~~~~l~~L~~L~L~~N~l~~--~~~~~~~~l~~L~~L~l~~N~ 406 (455)
T 3v47_A 339 DSRMF-ENLDKLEVLDLSYNH-IRALGDQ-SFLGLPNLKELALDTNQLKS--VPDGIFDRLTSLQKIWLHTNP 406 (455)
T ss_dssp CGGGG-TTCTTCCEEECCSSC-CCEECTT-TTTTCTTCCEEECCSSCCSC--CCTTTTTTCTTCCEEECCSSC
T ss_pred ChhHh-cCcccCCEEECCCCc-ccccChh-hccccccccEEECCCCcccc--CCHhHhccCCcccEEEccCCC
Confidence 33332 357999999999974 6654322 24679999999999984332 122244679999999998643
No 39
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.76 E-value=7.5e-19 Score=171.58 Aligned_cols=271 Identities=18% Similarity=0.185 Sum_probs=149.1
Q ss_pred cCccCcEEeccCCcccChhHHHHHHhcCCCCcEEEeccCCCCCHHHHHHHHhcCCCccEEEecCCCCCCcchhHHHHhhh
Q 046157 185 KLKRLKRINLSGNFFITDKSLMFLSSNLVLLREILIRDCDFITQSGISFAMRNSPNLVSISVNGIGIPTIDSCFKESFAY 264 (577)
Q Consensus 185 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 264 (577)
.+++|++|+++++. ++... ......+++|++|+++++...... ...+..+++|++|++.++.+.... +..+..
T Consensus 91 ~l~~L~~L~L~~n~-l~~~~-~~~~~~l~~L~~L~L~~n~l~~l~--~~~~~~l~~L~~L~L~~n~l~~~~---~~~~~~ 163 (390)
T 3o6n_A 91 YAHTIQKLYMGFNA-IRYLP-PHVFQNVPLLTVLVLERNDLSSLP--RGIFHNTPKLTTLSMSNNNLERIE---DDTFQA 163 (390)
T ss_dssp TCTTCCEEECCSSC-CCCCC-TTTTTTCTTCCEEECCSSCCCCCC--TTTTTTCTTCCEEECCSSCCCBCC---TTTTSS
T ss_pred CCCCcCEEECCCCC-CCcCC-HHHhcCCCCCCEEECCCCccCcCC--HHHhcCCCCCcEEECCCCccCccC---hhhccC
Confidence 34555555555532 21111 111233555666665554321100 012244566666666666543222 223456
Q ss_pred hcCCCEEEcCCCCCChHHHHHHHhcCCCCcEEEecCCCCCCHHHHHHHHhcCCCcCeeecccccccChHHHHHHHhcCCC
Q 046157 265 ARGLCEIDLSNSFISDELLRLLGEACLPLKKLVLSHCYNFTLAGISFLLSKYQSLEHLNLEAANFLEDESMIDLSKFLTS 344 (577)
Q Consensus 265 ~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~ 344 (577)
+++|++|+++++.+.... ...+++|+.++++++.... +...++|++|+++++. +.... ....++
T Consensus 164 l~~L~~L~l~~n~l~~~~----~~~l~~L~~L~l~~n~l~~-------~~~~~~L~~L~l~~n~-l~~~~----~~~~~~ 227 (390)
T 3o6n_A 164 TTSLQNLQLSSNRLTHVD----LSLIPSLFHANVSYNLLST-------LAIPIAVEELDASHNS-INVVR----GPVNVE 227 (390)
T ss_dssp CTTCCEEECCSSCCSBCC----GGGCTTCSEEECCSSCCSE-------EECCSSCSEEECCSSC-CCEEE----CCCCSS
T ss_pred CCCCCEEECCCCcCCccc----cccccccceeecccccccc-------cCCCCcceEEECCCCe-eeecc----cccccc
Confidence 667777777776655421 2236677777776653221 1234577777777766 22221 112467
Q ss_pred CCEEeecCCCCCChHHHHHHHhhCCCCCeEEeeeccCCCCcccccccCCCCccEEEcCCCCCCCHHHHHHHHhhCCCccE
Q 046157 345 LNFIDLGFCAKLTNSTFFTILRECPLLSEIKMETTNLGLDDFTTPLVINPQVKSLHLARNGNLSDESLKKLAILCPNLEV 424 (577)
Q Consensus 345 L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~ 424 (577)
|+.|+++++. +++. .....+++|++|++++|.+.... +..+..+++|+.|++++|. ++.. ......+++|+.
T Consensus 228 L~~L~l~~n~-l~~~---~~l~~l~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~L~~n~-l~~~--~~~~~~l~~L~~ 299 (390)
T 3o6n_A 228 LTILKLQHNN-LTDT---AWLLNYPGLVEVDLSYNELEKIM-YHPFVKMQRLERLYISNNR-LVAL--NLYGQPIPTLKV 299 (390)
T ss_dssp CCEEECCSSC-CCCC---GGGGGCTTCSEEECCSSCCCEEE-SGGGTTCSSCCEEECCSSC-CCEE--ECSSSCCTTCCE
T ss_pred ccEEECCCCC-Cccc---HHHcCCCCccEEECCCCcCCCcC-hhHccccccCCEEECCCCc-Cccc--CcccCCCCCCCE
Confidence 8888887754 3222 12346788888888887765432 4556777888888888765 4331 111234678888
Q ss_pred EecCCCCCCCHHHHHHHHhhCCCCcEEEcccccccccccccccCCCceEEEccCCCCCHHHHHHHHH
Q 046157 425 IDLSHCLGITEEGIGEILKSCCEIKCLEIKRCRAVFDLGIDLELPKLEVLQASGSALNDHALKMIAN 491 (577)
Q Consensus 425 L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~ 491 (577)
|++++| .++.. ...+..+++|+.|++++|. ++..+ ...+++|+.|++++|.++......+..
T Consensus 300 L~L~~n-~l~~~--~~~~~~l~~L~~L~L~~N~-i~~~~-~~~~~~L~~L~l~~N~~~~~~~~~~~~ 361 (390)
T 3o6n_A 300 LDLSHN-HLLHV--ERNQPQFDRLENLYLDHNS-IVTLK-LSTHHTLKNLTLSHNDWDCNSLRALFR 361 (390)
T ss_dssp EECCSS-CCCCC--GGGHHHHTTCSEEECCSSC-CCCCC-CCTTCCCSEEECCSSCEEHHHHHHHTT
T ss_pred EECCCC-cceec--CccccccCcCCEEECCCCc-cceeC-chhhccCCEEEcCCCCccchhHHHHHH
Confidence 888877 34321 1123456778888888776 44433 335667777777777777666555443
No 40
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.75 E-value=9.7e-18 Score=166.01 Aligned_cols=152 Identities=20% Similarity=0.236 Sum_probs=69.2
Q ss_pred cCCCcCeeecccccccChHHHHHHHhcCCCCCEEeecCCCCCChHHHHHHHhhCCCCCeEEeeeccCCCCcccccccCCC
Q 046157 315 KYQSLEHLNLEAANFLEDESMIDLSKFLTSLNFIDLGFCAKLTNSTFFTILRECPLLSEIKMETTNLGLDDFTTPLVINP 394 (577)
Q Consensus 315 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 394 (577)
.+++|+.|+++++. ++... ...+++|+.|+++++. ++... ...+++|+.|++++|.+.... ...++
T Consensus 189 ~l~~L~~L~l~~N~-l~~~~----l~~l~~L~~L~Ls~N~-l~~ip----~~~l~~L~~L~l~~N~l~~~~----~~~l~ 254 (457)
T 3bz5_A 189 QNKLLNRLNCDTNN-ITKLD----LNQNIQLTFLDCSSNK-LTEID----VTPLTQLTYFDCSVNPLTELD----VSTLS 254 (457)
T ss_dssp TCTTCCEEECCSSC-CSCCC----CTTCTTCSEEECCSSC-CSCCC----CTTCTTCSEEECCSSCCSCCC----CTTCT
T ss_pred cCCCCCEEECcCCc-CCeec----cccCCCCCEEECcCCc-ccccC----ccccCCCCEEEeeCCcCCCcC----HHHCC
Confidence 34455555555544 22221 1224555555555543 22211 234555666666655543321 23444
Q ss_pred CccEEEcCCCCCCCHHHHHHHHhhCCCccEEecCCCCCCCHHHHHHHHhhCCCCcEEEcccccccccccc---------c
Q 046157 395 QVKSLHLARNGNLSDESLKKLAILCPNLEVIDLSHCLGITEEGIGEILKSCCEIKCLEIKRCRAVFDLGI---------D 465 (577)
Q Consensus 395 ~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~---------~ 465 (577)
+|+.|++++ .+|+.|++++|....... ...|++|+.|++++|..+..... .
T Consensus 255 ~L~~L~l~~----------------n~L~~L~l~~n~~~~~~~----~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l 314 (457)
T 3bz5_A 255 KLTTLHCIQ----------------TDLLEIDLTHNTQLIYFQ----AEGCRKIKELDVTHNTQLYLLDCQAAGITELDL 314 (457)
T ss_dssp TCCEEECTT----------------CCCSCCCCTTCTTCCEEE----CTTCTTCCCCCCTTCTTCCEEECTTCCCSCCCC
T ss_pred CCCEEeccC----------------CCCCEEECCCCccCCccc----ccccccCCEEECCCCcccceeccCCCcceEech
Confidence 555554432 234445555443222211 23456666666666654333221 1
Q ss_pred ccCCCceEEEccCCCCCHHHHHHHHHhCCCccEEecCCC
Q 046157 466 LELPKLEVLQASGSALNDHALKMIANTCSRILHLDLDNC 504 (577)
Q Consensus 466 ~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~c 504 (577)
..+++|+.|++++|.++... ...+++|+.|+++++
T Consensus 315 ~~~~~L~~L~L~~N~l~~l~----l~~l~~L~~L~l~~N 349 (457)
T 3bz5_A 315 SQNPKLVYLYLNNTELTELD----VSHNTKLKSLSCVNA 349 (457)
T ss_dssp TTCTTCCEEECTTCCCSCCC----CTTCTTCSEEECCSS
T ss_pred hhcccCCEEECCCCcccccc----cccCCcCcEEECCCC
Confidence 13345666666665555421 223556666666554
No 41
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.74 E-value=2e-18 Score=168.59 Aligned_cols=324 Identities=16% Similarity=0.153 Sum_probs=222.1
Q ss_pred cCccCcEEeccCCcccChhHHHHHHhcCCCCcEEEeccCCCCCHHHHHHHHhcCCCccEEEecCCCCCCcchhHHHHhhh
Q 046157 185 KLKRLKRINLSGNFFITDKSLMFLSSNLVLLREILIRDCDFITQSGISFAMRNSPNLVSISVNGIGIPTIDSCFKESFAY 264 (577)
Q Consensus 185 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 264 (577)
.+++++.|+++++. ++.-. ..+...+++|++|++.++.. .... ...+..+++|++|++.++.+.... +..+..
T Consensus 43 ~l~~l~~l~l~~~~-l~~l~-~~~~~~l~~L~~L~L~~n~i-~~~~-~~~~~~l~~L~~L~L~~n~l~~~~---~~~~~~ 115 (390)
T 3o6n_A 43 TLNNQKIVTFKNST-MRKLP-AALLDSFRQVELLNLNDLQI-EEID-TYAFAYAHTIQKLYMGFNAIRYLP---PHVFQN 115 (390)
T ss_dssp GGCCCSEEEEESCE-ESEEC-THHHHHCCCCSEEECTTSCC-CEEC-TTTTTTCTTCCEEECCSSCCCCCC---TTTTTT
T ss_pred ccCCceEEEecCCc-hhhCC-hhHhcccccCcEEECCCCcc-cccC-hhhccCCCCcCEEECCCCCCCcCC---HHHhcC
Confidence 36789999998753 32211 23345689999999998642 2211 123466899999999998764433 344678
Q ss_pred hcCCCEEEcCCCCCChHHHHHHHhcCCCCcEEEecCCCCCCHHHHHHHHhcCCCcCeeecccccccChHHHHHHHhcCCC
Q 046157 265 ARGLCEIDLSNSFISDELLRLLGEACLPLKKLVLSHCYNFTLAGISFLLSKYQSLEHLNLEAANFLEDESMIDLSKFLTS 344 (577)
Q Consensus 265 ~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~ 344 (577)
+++|++|+++++.+.... ..+...+++|++|+++++..... ....+..+++|++|+++++. ++... ...+++
T Consensus 116 l~~L~~L~L~~n~l~~l~-~~~~~~l~~L~~L~L~~n~l~~~--~~~~~~~l~~L~~L~l~~n~-l~~~~----~~~l~~ 187 (390)
T 3o6n_A 116 VPLLTVLVLERNDLSSLP-RGIFHNTPKLTTLSMSNNNLERI--EDDTFQATTSLQNLQLSSNR-LTHVD----LSLIPS 187 (390)
T ss_dssp CTTCCEEECCSSCCCCCC-TTTTTTCTTCCEEECCSSCCCBC--CTTTTSSCTTCCEEECCSSC-CSBCC----GGGCTT
T ss_pred CCCCCEEECCCCccCcCC-HHHhcCCCCCcEEECCCCccCcc--ChhhccCCCCCCEEECCCCc-CCccc----cccccc
Confidence 899999999998776321 12234478999999998753221 01124567899999999987 44432 234789
Q ss_pred CCEEeecCCCCCChHHHHHHHhhCCCCCeEEeeeccCCCCcccccccCCCCccEEEcCCCCCCCHHHHHHHHhhCCCccE
Q 046157 345 LNFIDLGFCAKLTNSTFFTILRECPLLSEIKMETTNLGLDDFTTPLVINPQVKSLHLARNGNLSDESLKKLAILCPNLEV 424 (577)
Q Consensus 345 L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~ 424 (577)
|+.|+++++. ++.. ...++|++|++.+|.+.... ....++|+.|+++++. +++. .....+++|+.
T Consensus 188 L~~L~l~~n~-l~~~------~~~~~L~~L~l~~n~l~~~~----~~~~~~L~~L~l~~n~-l~~~---~~l~~l~~L~~ 252 (390)
T 3o6n_A 188 LFHANVSYNL-LSTL------AIPIAVEELDASHNSINVVR----GPVNVELTILKLQHNN-LTDT---AWLLNYPGLVE 252 (390)
T ss_dssp CSEEECCSSC-CSEE------ECCSSCSEEECCSSCCCEEE----CCCCSSCCEEECCSSC-CCCC---GGGGGCTTCSE
T ss_pred cceeeccccc-cccc------CCCCcceEEECCCCeeeecc----ccccccccEEECCCCC-Cccc---HHHcCCCCccE
Confidence 9999998854 3321 24568999999998775432 2345899999999987 5443 23356899999
Q ss_pred EecCCCCCCCHHHHHHHHhhCCCCcEEEccccccccccc-ccccCCCceEEEccCCCCCHHHHHHHHHhCCCccEEecCC
Q 046157 425 IDLSHCLGITEEGIGEILKSCCEIKCLEIKRCRAVFDLG-IDLELPKLEVLQASGSALNDHALKMIANTCSRILHLDLDN 503 (577)
Q Consensus 425 L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~-~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~ 503 (577)
|+++++ .++... ...+..+++|+.|++++|. ++... ....+|+|++|++++|.++..... + ..+++|+.|++++
T Consensus 253 L~Ls~n-~l~~~~-~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~-~~l~~L~~L~L~~ 327 (390)
T 3o6n_A 253 VDLSYN-ELEKIM-YHPFVKMQRLERLYISNNR-LVALNLYGQPIPTLKVLDLSHNHLLHVERN-Q-PQFDRLENLYLDH 327 (390)
T ss_dssp EECCSS-CCCEEE-SGGGTTCSSCCEEECCSSC-CCEEECSSSCCTTCCEEECCSSCCCCCGGG-H-HHHTTCSEEECCS
T ss_pred EECCCC-cCCCcC-hhHccccccCCEEECCCCc-CcccCcccCCCCCCCEEECCCCcceecCcc-c-cccCcCCEEECCC
Confidence 999998 455432 2235678999999999997 44444 345789999999999988743211 2 2469999999999
Q ss_pred CCCCChhhHHHHHhhCCCCcEEEecCCCCCcHHHHHHHHHhCCCCc
Q 046157 504 CLNVTTSGVKEVVEHCRTLREINLRWCDEVNVDIVAWMVFSRPSLR 549 (577)
Q Consensus 504 c~~l~~~~l~~~~~~~~~L~~L~l~~c~~~~~~~~~~~~~~~~~L~ 549 (577)
|+ ++... ...+++|+.|++++++ +..+........+++..
T Consensus 328 N~-i~~~~----~~~~~~L~~L~l~~N~-~~~~~~~~~~~~~~~~~ 367 (390)
T 3o6n_A 328 NS-IVTLK----LSTHHTLKNLTLSHND-WDCNSLRALFRNVARPA 367 (390)
T ss_dssp SC-CCCCC----CCTTCCCSEEECCSSC-EEHHHHHHHTTTCCTTT
T ss_pred Cc-cceeC----chhhccCCEEEcCCCC-ccchhHHHHHHHHHhhc
Confidence 75 66543 4678999999999985 44445555555555444
No 42
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.73 E-value=8.7e-18 Score=166.32 Aligned_cols=303 Identities=14% Similarity=0.095 Sum_probs=198.2
Q ss_pred hcCCCcEeeccCCCCCCCCCCcCcccccccccccCHHHHHHHHHcCccCcEEeccCCcccChhHHHHHHhcCCCCcEEEe
Q 046157 141 TCEFLEVLDISYPENDSSFLPQGFQNIQSFSFYITDSGIEALSMKLKRLKRINLSGNFFITDKSLMFLSSNLVLLREILI 220 (577)
Q Consensus 141 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l 220 (577)
.+++|++|+++++. +++. ..+. .+++|++|+++++. ++... ...+++|++|++
T Consensus 40 ~l~~L~~L~Ls~n~-------------------l~~~--~~l~-~l~~L~~L~Ls~n~-l~~~~----~~~l~~L~~L~L 92 (457)
T 3bz5_A 40 QLATLTSLDCHNSS-------------------ITDM--TGIE-KLTGLTKLICTSNN-ITTLD----LSQNTNLTYLAC 92 (457)
T ss_dssp HHTTCCEEECCSSC-------------------CCCC--TTGG-GCTTCSEEECCSSC-CSCCC----CTTCTTCSEEEC
T ss_pred HcCCCCEEEccCCC-------------------cccC--hhhc-ccCCCCEEEccCCc-CCeEc----cccCCCCCEEEC
Confidence 46789999999987 3332 1233 68899999999863 43321 356889999999
Q ss_pred ccCCCCCHHHHHHHHhcCCCccEEEecCCCCCCcchhHHHHhhhhcCCCEEEcCCCCCChHHHHHHHhcCCCCcEEEecC
Q 046157 221 RDCDFITQSGISFAMRNSPNLVSISVNGIGIPTIDSCFKESFAYARGLCEIDLSNSFISDELLRLLGEACLPLKKLVLSH 300 (577)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~ 300 (577)
+++.... .. +..+++|+.|++.++.+..+. +..+++|++|+++++.+.... ...+++|+.|++++
T Consensus 93 s~N~l~~-~~----~~~l~~L~~L~L~~N~l~~l~------~~~l~~L~~L~l~~N~l~~l~----l~~l~~L~~L~l~~ 157 (457)
T 3bz5_A 93 DSNKLTN-LD----VTPLTKLTYLNCDTNKLTKLD------VSQNPLLTYLNCARNTLTEID----VSHNTQLTELDCHL 157 (457)
T ss_dssp CSSCCSC-CC----CTTCTTCCEEECCSSCCSCCC------CTTCTTCCEEECTTSCCSCCC----CTTCTTCCEEECTT
T ss_pred cCCCCce-ee----cCCCCcCCEEECCCCcCCeec------CCCCCcCCEEECCCCccceec----cccCCcCCEEECCC
Confidence 9875322 21 467889999999998775442 678889999999998776521 33478888888888
Q ss_pred CCCCCHHHHHHHHhcCCCcCeeecccccccChHHHHHHHhcCCCCCEEeecCCCCCChHHHHHHHhhCCCCCeEEeeecc
Q 046157 301 CYNFTLAGISFLLSKYQSLEHLNLEAANFLEDESMIDLSKFLTSLNFIDLGFCAKLTNSTFFTILRECPLLSEIKMETTN 380 (577)
Q Consensus 301 ~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~ 380 (577)
+....... +..+++|+.|+++++. ++... ...+++|+.|+++++. ++... ...+++|+.|++++|.
T Consensus 158 n~~~~~~~----~~~l~~L~~L~ls~n~-l~~l~----l~~l~~L~~L~l~~N~-l~~~~----l~~l~~L~~L~Ls~N~ 223 (457)
T 3bz5_A 158 NKKITKLD----VTPQTQLTTLDCSFNK-ITELD----VSQNKLLNRLNCDTNN-ITKLD----LNQNIQLTFLDCSSNK 223 (457)
T ss_dssp CSCCCCCC----CTTCTTCCEEECCSSC-CCCCC----CTTCTTCCEEECCSSC-CSCCC----CTTCTTCSEEECCSSC
T ss_pred CCcccccc----cccCCcCCEEECCCCc-cceec----cccCCCCCEEECcCCc-CCeec----cccCCCCCEEECcCCc
Confidence 75443221 3457788888888876 44322 2346788888887754 33221 3457788888888877
Q ss_pred CCCCcccccccCCCCccEEEcCCCCCCCHHHHHHHHhhCCCccEEecCCCCCCCHHHHHHHHhhCCCCcEEEcccccccc
Q 046157 381 LGLDDFTTPLVINPQVKSLHLARNGNLSDESLKKLAILCPNLEVIDLSHCLGITEEGIGEILKSCCEIKCLEIKRCRAVF 460 (577)
Q Consensus 381 ~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~ 460 (577)
+... .+..+++|+.|++++|. ++... ...+++|+.|+++++ +|+.|++++|....
T Consensus 224 l~~i----p~~~l~~L~~L~l~~N~-l~~~~----~~~l~~L~~L~l~~n----------------~L~~L~l~~n~~~~ 278 (457)
T 3bz5_A 224 LTEI----DVTPLTQLTYFDCSVNP-LTELD----VSTLSKLTTLHCIQT----------------DLLEIDLTHNTQLI 278 (457)
T ss_dssp CSCC----CCTTCTTCSEEECCSSC-CSCCC----CTTCTTCCEEECTTC----------------CCSCCCCTTCTTCC
T ss_pred cccc----CccccCCCCEEEeeCCc-CCCcC----HHHCCCCCEEeccCC----------------CCCEEECCCCccCC
Confidence 6552 16677788888888765 43321 234677777777542 57777888887555
Q ss_pred cccccccCCCceEEEccCCCCCHHHH------HHH-HHhCCCccEEecCCCCCCChhhHHHHHhhCCCCcEEEecCC
Q 046157 461 DLGIDLELPKLEVLQASGSALNDHAL------KMI-ANTCSRILHLDLDNCLNVTTSGVKEVVEHCRTLREINLRWC 530 (577)
Q Consensus 461 ~~~~~~~~~~L~~L~l~~~~i~~~~~------~~l-~~~~~~L~~L~l~~c~~l~~~~l~~~~~~~~~L~~L~l~~c 530 (577)
... ...+++|+.|++++|....... ..+ ...+++|+.|+++++. ++... +..|++|+.|+++++
T Consensus 279 ~~~-~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L~L~~N~-l~~l~----l~~l~~L~~L~l~~N 349 (457)
T 3bz5_A 279 YFQ-AEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLYLNNTE-LTELD----VSHNTKLKSLSCVNA 349 (457)
T ss_dssp EEE-CTTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTCC-CSCCC----CTTCTTCSEEECCSS
T ss_pred ccc-ccccccCCEEECCCCcccceeccCCCcceEechhhcccCCEEECCCCc-ccccc----cccCCcCcEEECCCC
Confidence 444 3467899999998875321100 000 1134677777777653 55421 466778888887775
No 43
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.71 E-value=8.7e-18 Score=173.13 Aligned_cols=271 Identities=18% Similarity=0.191 Sum_probs=166.4
Q ss_pred cCccCcEEeccCCcccChhHHHHHHhcCCCCcEEEeccCCCCCHHHHHHHHhcCCCccEEEecCCCCCCcchhHHHHhhh
Q 046157 185 KLKRLKRINLSGNFFITDKSLMFLSSNLVLLREILIRDCDFITQSGISFAMRNSPNLVSISVNGIGIPTIDSCFKESFAY 264 (577)
Q Consensus 185 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 264 (577)
.+++|++|+++++. ++... ...+..+++|++|+++++...... ...+..+++|+.|++.++.+.... +..+..
T Consensus 97 ~l~~L~~L~L~~n~-l~~~~-~~~~~~l~~L~~L~L~~n~l~~l~--~~~~~~l~~L~~L~Ls~N~l~~~~---~~~~~~ 169 (597)
T 3oja_B 97 YAHTIQKLYMGFNA-IRYLP-PHVFQNVPLLTVLVLERNDLSSLP--RGIFHNTPKLTTLSMSNNNLERIE---DDTFQA 169 (597)
T ss_dssp TCTTCCEEECCSSC-CCCCC-TTTTTTCTTCCEEECCSSCCCCCC--TTTTTTCTTCCEEECCSSCCCBCC---TTTTTT
T ss_pred CCCCCCEEECCCCc-CCCCC-HHHHcCCCCCCEEEeeCCCCCCCC--HHHhccCCCCCEEEeeCCcCCCCC---hhhhhc
Confidence 45566666666542 21111 111234566666666654321110 012345677777777776543322 234566
Q ss_pred hcCCCEEEcCCCCCChHHHHHHHhcCCCCcEEEecCCCCCCHHHHHHHHhcCCCcCeeecccccccChHHHHHHHhcCCC
Q 046157 265 ARGLCEIDLSNSFISDELLRLLGEACLPLKKLVLSHCYNFTLAGISFLLSKYQSLEHLNLEAANFLEDESMIDLSKFLTS 344 (577)
Q Consensus 265 ~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~ 344 (577)
+++|++|+++++.+.... ...+++|+.|+++++.... +...++|+.|+++++. ++... ....++
T Consensus 170 l~~L~~L~L~~N~l~~~~----~~~l~~L~~L~l~~n~l~~-------l~~~~~L~~L~ls~n~-l~~~~----~~~~~~ 233 (597)
T 3oja_B 170 TTSLQNLQLSSNRLTHVD----LSLIPSLFHANVSYNLLST-------LAIPIAVEELDASHNS-INVVR----GPVNVE 233 (597)
T ss_dssp CTTCCEEECTTSCCSBCC----GGGCTTCSEEECCSSCCSE-------EECCTTCSEEECCSSC-CCEEE----CSCCSC
T ss_pred CCcCcEEECcCCCCCCcC----hhhhhhhhhhhcccCcccc-------ccCCchhheeeccCCc-ccccc----cccCCC
Confidence 777777777777665431 2336778888777753321 2234578888888776 32211 112467
Q ss_pred CCEEeecCCCCCChHHHHHHHhhCCCCCeEEeeeccCCCCcccccccCCCCccEEEcCCCCCCCHHHHHHHHhhCCCccE
Q 046157 345 LNFIDLGFCAKLTNSTFFTILRECPLLSEIKMETTNLGLDDFTTPLVINPQVKSLHLARNGNLSDESLKKLAILCPNLEV 424 (577)
Q Consensus 345 L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~ 424 (577)
|+.|+++++. +++. .....+++|+.|++++|.+.... +..+..+++|+.|++++|. ++.. ......+++|+.
T Consensus 234 L~~L~L~~n~-l~~~---~~l~~l~~L~~L~Ls~N~l~~~~-~~~~~~l~~L~~L~Ls~N~-l~~l--~~~~~~l~~L~~ 305 (597)
T 3oja_B 234 LTILKLQHNN-LTDT---AWLLNYPGLVEVDLSYNELEKIM-YHPFVKMQRLERLYISNNR-LVAL--NLYGQPIPTLKV 305 (597)
T ss_dssp CCEEECCSSC-CCCC---GGGGGCTTCSEEECCSSCCCEEE-SGGGTTCSSCCEEECTTSC-CCEE--ECSSSCCTTCCE
T ss_pred CCEEECCCCC-CCCC---hhhccCCCCCEEECCCCccCCCC-HHHhcCccCCCEEECCCCC-CCCC--CcccccCCCCcE
Confidence 8888888865 3322 22457889999999988775443 5667888999999999876 4431 112234789999
Q ss_pred EecCCCCCCCHHHHHHHHhhCCCCcEEEcccccccccccccccCCCceEEEccCCCCCHHHHHHHHH
Q 046157 425 IDLSHCLGITEEGIGEILKSCCEIKCLEIKRCRAVFDLGIDLELPKLEVLQASGSALNDHALKMIAN 491 (577)
Q Consensus 425 L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~ 491 (577)
|++++| .++. +...+..+++|+.|++++|. +...+ ...+++|+.|++++|.++......+..
T Consensus 306 L~Ls~N-~l~~--i~~~~~~l~~L~~L~L~~N~-l~~~~-~~~~~~L~~L~l~~N~~~~~~~~~~~~ 367 (597)
T 3oja_B 306 LDLSHN-HLLH--VERNQPQFDRLENLYLDHNS-IVTLK-LSTHHTLKNLTLSHNDWDCNSLRALFR 367 (597)
T ss_dssp EECCSS-CCCC--CGGGHHHHTTCSEEECCSSC-CCCCC-CCTTCCCSEEECCSSCEEHHHHHHHTT
T ss_pred EECCCC-CCCc--cCcccccCCCCCEEECCCCC-CCCcC-hhhcCCCCEEEeeCCCCCChhHHHHHH
Confidence 999988 4442 22224667899999999988 44443 446789999999999988776665543
No 44
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.71 E-value=2e-18 Score=173.49 Aligned_cols=302 Identities=17% Similarity=0.137 Sum_probs=153.4
Q ss_pred ccCcEEeccCCcccChhHHHHHHhcCCCCcEEEeccCCCCCHHHHHHHHhcCCCccEEEecCCCCCCcchhHHHHhhhhc
Q 046157 187 KRLKRINLSGNFFITDKSLMFLSSNLVLLREILIRDCDFITQSGISFAMRNSPNLVSISVNGIGIPTIDSCFKESFAYAR 266 (577)
Q Consensus 187 ~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 266 (577)
++++.|+++++ .++... ...+..+++|++|+++++. +... ....+..+++|+.|++.++.+..+.. ..+..++
T Consensus 32 ~~l~~L~L~~n-~l~~~~-~~~~~~l~~L~~L~L~~n~-i~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~---~~~~~l~ 104 (477)
T 2id5_A 32 TETRLLDLGKN-RIKTLN-QDEFASFPHLEELELNENI-VSAV-EPGAFNNLFNLRTLGLRSNRLKLIPL---GVFTGLS 104 (477)
T ss_dssp TTCSEEECCSS-CCCEEC-TTTTTTCTTCCEEECTTSC-CCEE-CTTTTTTCTTCCEEECCSSCCCSCCT---TSSTTCT
T ss_pred CCCcEEECCCC-ccceEC-HhHccCCCCCCEEECCCCc-cCEe-ChhhhhCCccCCEEECCCCcCCccCc---ccccCCC
Confidence 46888888875 232211 1112446777777777653 2211 01223456666666666665433221 1234556
Q ss_pred CCCEEEcCCCCCChHHHHHHHhcCCCCcEEEecCCCCCCHHHHHHHHhcCCCcCeeecccccccChHHHHHHHhcCCCCC
Q 046157 267 GLCEIDLSNSFISDELLRLLGEACLPLKKLVLSHCYNFTLAGISFLLSKYQSLEHLNLEAANFLEDESMIDLSKFLTSLN 346 (577)
Q Consensus 267 ~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~ 346 (577)
+|++|+++++.+....... +..+++|++|+++++. +.......+ ..+++|+
T Consensus 105 ~L~~L~Ls~n~i~~~~~~~---------------------------~~~l~~L~~L~l~~n~-l~~~~~~~~-~~l~~L~ 155 (477)
T 2id5_A 105 NLTKLDISENKIVILLDYM---------------------------FQDLYNLKSLEVGDND-LVYISHRAF-SGLNSLE 155 (477)
T ss_dssp TCCEEECTTSCCCEECTTT---------------------------TTTCTTCCEEEECCTT-CCEECTTSS-TTCTTCC
T ss_pred CCCEEECCCCccccCChhH---------------------------ccccccCCEEECCCCc-cceeChhhc-cCCCCCC
Confidence 6666666665543211111 2234455555554443 111111111 1245666
Q ss_pred EEeecCCCCCChHHHHHHHhhCCCCCeEEeeeccCCCCcccccccCCCCccEEEcCCCCCCCHHHHHHHHhhCCCccEEe
Q 046157 347 FIDLGFCAKLTNSTFFTILRECPLLSEIKMETTNLGLDDFTTPLVINPQVKSLHLARNGNLSDESLKKLAILCPNLEVID 426 (577)
Q Consensus 347 ~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~ 426 (577)
.|+++++. ++... ......+++|+.|++.+|.+.... ...+..+++|+.|++++|..+...... . ....+|+.|+
T Consensus 156 ~L~l~~n~-l~~~~-~~~l~~l~~L~~L~l~~n~i~~~~-~~~~~~l~~L~~L~l~~~~~~~~~~~~-~-~~~~~L~~L~ 230 (477)
T 2id5_A 156 QLTLEKCN-LTSIP-TEALSHLHGLIVLRLRHLNINAIR-DYSFKRLYRLKVLEISHWPYLDTMTPN-C-LYGLNLTSLS 230 (477)
T ss_dssp EEEEESCC-CSSCC-HHHHTTCTTCCEEEEESCCCCEEC-TTCSCSCTTCCEEEEECCTTCCEECTT-T-TTTCCCSEEE
T ss_pred EEECCCCc-CcccC-hhHhcccCCCcEEeCCCCcCcEeC-hhhcccCcccceeeCCCCccccccCcc-c-ccCccccEEE
Confidence 66665543 22111 112235666667766666554332 334566677777777765533321111 1 1224677777
Q ss_pred cCCCCCCCHHHHHHHHhhCCCCcEEEccccccccccc--ccccCCCceEEEccCCCCCHHHHHHHHHhCCCccEEecCCC
Q 046157 427 LSHCLGITEEGIGEILKSCCEIKCLEIKRCRAVFDLG--IDLELPKLEVLQASGSALNDHALKMIANTCSRILHLDLDNC 504 (577)
Q Consensus 427 l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~--~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~c 504 (577)
+++| .++.... ..+..+++|+.|++++|. ++... ....+++|+.|++++|.++......+ ..+++|+.|++++|
T Consensus 231 l~~n-~l~~~~~-~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~-~~l~~L~~L~L~~N 306 (477)
T 2id5_A 231 ITHC-NLTAVPY-LAVRHLVYLRFLNLSYNP-ISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAF-RGLNYLRVLNVSGN 306 (477)
T ss_dssp EESS-CCCSCCH-HHHTTCTTCCEEECCSSC-CCEECTTSCTTCTTCCEEECCSSCCSEECTTTB-TTCTTCCEEECCSS
T ss_pred CcCC-cccccCH-HHhcCccccCeeECCCCc-CCccChhhccccccCCEEECCCCccceECHHHh-cCcccCCEEECCCC
Confidence 7776 3443221 235667777777777776 33332 23456777777777776655322222 24577777777775
Q ss_pred CCCChhhHHHHHhhCCCCcEEEecCCCCCcH
Q 046157 505 LNVTTSGVKEVVEHCRTLREINLRWCDEVNV 535 (577)
Q Consensus 505 ~~l~~~~l~~~~~~~~~L~~L~l~~c~~~~~ 535 (577)
. ++.... ..+..+++|+.|++++++-..+
T Consensus 307 ~-l~~~~~-~~~~~l~~L~~L~l~~N~l~c~ 335 (477)
T 2id5_A 307 Q-LTTLEE-SVFHSVGNLETLILDSNPLACD 335 (477)
T ss_dssp C-CSCCCG-GGBSCGGGCCEEECCSSCEECS
T ss_pred c-CceeCH-hHcCCCcccCEEEccCCCccCc
Confidence 3 543221 2235567777777777654433
No 45
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.70 E-value=1.1e-17 Score=172.33 Aligned_cols=320 Identities=17% Similarity=0.149 Sum_probs=212.4
Q ss_pred CccCcEEeccCCcccChhHHHHHHhcCCCCcEEEeccCCCCCHHHHHHHHhcCCCccEEEecCCCCCCcchhHHHHhhhh
Q 046157 186 LKRLKRINLSGNFFITDKSLMFLSSNLVLLREILIRDCDFITQSGISFAMRNSPNLVSISVNGIGIPTIDSCFKESFAYA 265 (577)
Q Consensus 186 ~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 265 (577)
+++++.++++++. ++.- ...+...+++|+.|++.++.. .... ...+..+++|+.|++.++.+.... +..+..+
T Consensus 50 l~~l~~l~l~~~~-l~~l-p~~~~~~l~~L~~L~L~~n~l-~~~~-~~~~~~l~~L~~L~L~~n~l~~~~---~~~~~~l 122 (597)
T 3oja_B 50 LNNQKIVTFKNST-MRKL-PAALLDSFRQVELLNLNDLQI-EEID-TYAFAYAHTIQKLYMGFNAIRYLP---PHVFQNV 122 (597)
T ss_dssp GCCCSEEEESSCE-ESEE-CTHHHHHCCCCSEEECTTSCC-CEEC-TTTTTTCTTCCEEECCSSCCCCCC---TTTTTTC
T ss_pred CCCceEEEeeCCC-CCCc-CHHHHccCCCCcEEECCCCCC-CCCC-hHHhcCCCCCCEEECCCCcCCCCC---HHHHcCC
Confidence 5678888888752 2211 123345588899999987642 2210 123456789999999988764433 3345778
Q ss_pred cCCCEEEcCCCCCChHHHHHHHhcCCCCcEEEecCCCCCCHHHHHHHHhcCCCcCeeecccccccChHHHHHHHhcCCCC
Q 046157 266 RGLCEIDLSNSFISDELLRLLGEACLPLKKLVLSHCYNFTLAGISFLLSKYQSLEHLNLEAANFLEDESMIDLSKFLTSL 345 (577)
Q Consensus 266 ~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L 345 (577)
++|++|++++|.+.... ..+...+++|+.|+++++..... ....+..+++|+.|+++++. ++... ...+++|
T Consensus 123 ~~L~~L~L~~n~l~~l~-~~~~~~l~~L~~L~Ls~N~l~~~--~~~~~~~l~~L~~L~L~~N~-l~~~~----~~~l~~L 194 (597)
T 3oja_B 123 PLLTVLVLERNDLSSLP-RGIFHNTPKLTTLSMSNNNLERI--EDDTFQATTSLQNLQLSSNR-LTHVD----LSLIPSL 194 (597)
T ss_dssp TTCCEEECCSSCCCCCC-TTTTTTCTTCCEEECCSSCCCBC--CTTTTTTCTTCCEEECTTSC-CSBCC----GGGCTTC
T ss_pred CCCCEEEeeCCCCCCCC-HHHhccCCCCCEEEeeCCcCCCC--ChhhhhcCCcCcEEECcCCC-CCCcC----hhhhhhh
Confidence 89999999988766321 12234478899999988753221 11124567899999999887 44432 2347889
Q ss_pred CEEeecCCCCCChHHHHHHHhhCCCCCeEEeeeccCCCCcccccccCCCCccEEEcCCCCCCCHHHHHHHHhhCCCccEE
Q 046157 346 NFIDLGFCAKLTNSTFFTILRECPLLSEIKMETTNLGLDDFTTPLVINPQVKSLHLARNGNLSDESLKKLAILCPNLEVI 425 (577)
Q Consensus 346 ~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L 425 (577)
+.|+++++. ++.. ...++|+.|++++|.+.... ....++|+.|++++|. +++. .....+++|+.|
T Consensus 195 ~~L~l~~n~-l~~l------~~~~~L~~L~ls~n~l~~~~----~~~~~~L~~L~L~~n~-l~~~---~~l~~l~~L~~L 259 (597)
T 3oja_B 195 FHANVSYNL-LSTL------AIPIAVEELDASHNSINVVR----GPVNVELTILKLQHNN-LTDT---AWLLNYPGLVEV 259 (597)
T ss_dssp SEEECCSSC-CSEE------ECCTTCSEEECCSSCCCEEE----CSCCSCCCEEECCSSC-CCCC---GGGGGCTTCSEE
T ss_pred hhhhcccCc-cccc------cCCchhheeeccCCcccccc----cccCCCCCEEECCCCC-CCCC---hhhccCCCCCEE
Confidence 999998754 3321 24568999999998765332 1234789999999987 5442 223468999999
Q ss_pred ecCCCCCCCHHHHHHHHhhCCCCcEEEccccccccccc-ccccCCCceEEEccCCCCCHHHHHHHHHhCCCccEEecCCC
Q 046157 426 DLSHCLGITEEGIGEILKSCCEIKCLEIKRCRAVFDLG-IDLELPKLEVLQASGSALNDHALKMIANTCSRILHLDLDNC 504 (577)
Q Consensus 426 ~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~-~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~c 504 (577)
++++| .++... ...+..+++|+.|++++|. ++... ....+|+|+.|++++|.++... ..+ ..+++|+.|++++|
T Consensus 260 ~Ls~N-~l~~~~-~~~~~~l~~L~~L~Ls~N~-l~~l~~~~~~l~~L~~L~Ls~N~l~~i~-~~~-~~l~~L~~L~L~~N 334 (597)
T 3oja_B 260 DLSYN-ELEKIM-YHPFVKMQRLERLYISNNR-LVALNLYGQPIPTLKVLDLSHNHLLHVE-RNQ-PQFDRLENLYLDHN 334 (597)
T ss_dssp ECCSS-CCCEEE-SGGGTTCSSCCEEECTTSC-CCEEECSSSCCTTCCEEECCSSCCCCCG-GGH-HHHTTCSEEECCSS
T ss_pred ECCCC-ccCCCC-HHHhcCccCCCEEECCCCC-CCCCCcccccCCCCcEEECCCCCCCccC-ccc-ccCCCCCEEECCCC
Confidence 99998 455432 2235678999999999987 44443 3456899999999999887422 112 35689999999997
Q ss_pred CCCChhhHHHHHhhCCCCcEEEecCCCCCcHHHHHHHHHhCC
Q 046157 505 LNVTTSGVKEVVEHCRTLREINLRWCDEVNVDIVAWMVFSRP 546 (577)
Q Consensus 505 ~~l~~~~l~~~~~~~~~L~~L~l~~c~~~~~~~~~~~~~~~~ 546 (577)
. ++... ...+++|+.|++++++.-. +.........+
T Consensus 335 ~-l~~~~----~~~~~~L~~L~l~~N~~~~-~~~~~~~~~~~ 370 (597)
T 3oja_B 335 S-IVTLK----LSTHHTLKNLTLSHNDWDC-NSLRALFRNVA 370 (597)
T ss_dssp C-CCCCC----CCTTCCCSEEECCSSCEEH-HHHHHHTTTCC
T ss_pred C-CCCcC----hhhcCCCCEEEeeCCCCCC-hhHHHHHHHHh
Confidence 5 65433 4678999999999986443 33444443333
No 46
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.66 E-value=5e-18 Score=170.55 Aligned_cols=300 Identities=16% Similarity=0.123 Sum_probs=170.7
Q ss_pred CCCcEeeccCCCCCCCCCCcCcccccccccccCHHHHHHHHHcCccCcEEeccCCcccChhHHHHHHhcCCCCcEEEecc
Q 046157 143 EFLEVLDISYPENDSSFLPQGFQNIQSFSFYITDSGIEALSMKLKRLKRINLSGNFFITDKSLMFLSSNLVLLREILIRD 222 (577)
Q Consensus 143 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~ 222 (577)
+++++|+++++. ++......+. .+++|++|+++++ .++.... ..+..+++|++|++++
T Consensus 32 ~~l~~L~L~~n~-------------------l~~~~~~~~~-~l~~L~~L~L~~n-~i~~~~~-~~~~~l~~L~~L~L~~ 89 (477)
T 2id5_A 32 TETRLLDLGKNR-------------------IKTLNQDEFA-SFPHLEELELNEN-IVSAVEP-GAFNNLFNLRTLGLRS 89 (477)
T ss_dssp TTCSEEECCSSC-------------------CCEECTTTTT-TCTTCCEEECTTS-CCCEECT-TTTTTCTTCCEEECCS
T ss_pred CCCcEEECCCCc-------------------cceECHhHcc-CCCCCCEEECCCC-ccCEeCh-hhhhCCccCCEEECCC
Confidence 578899999887 3332112222 6889999999986 3332211 2235689999999988
Q ss_pred CCCCCHHHHHHHHhcCCCccEEEecCCCCCCcchhHHHHhhhhcCCCEEEcCCCCCChHHHHHHHhcCCCCcEEEecCCC
Q 046157 223 CDFITQSGISFAMRNSPNLVSISVNGIGIPTIDSCFKESFAYARGLCEIDLSNSFISDELLRLLGEACLPLKKLVLSHCY 302 (577)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~~ 302 (577)
+.. .... ...+..+++|+.|++.++.+... .+..+..+++|++|+++++.+.......+ ..+++|++|++.++.
T Consensus 90 n~l-~~~~-~~~~~~l~~L~~L~Ls~n~i~~~---~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-~~l~~L~~L~l~~n~ 163 (477)
T 2id5_A 90 NRL-KLIP-LGVFTGLSNLTKLDISENKIVIL---LDYMFQDLYNLKSLEVGDNDLVYISHRAF-SGLNSLEQLTLEKCN 163 (477)
T ss_dssp SCC-CSCC-TTSSTTCTTCCEEECTTSCCCEE---CTTTTTTCTTCCEEEECCTTCCEECTTSS-TTCTTCCEEEEESCC
T ss_pred CcC-CccC-cccccCCCCCCEEECCCCccccC---ChhHccccccCCEEECCCCccceeChhhc-cCCCCCCEEECCCCc
Confidence 642 2110 12345689999999999876433 23456788999999999987654322222 237788888888864
Q ss_pred CCCHHHHHHHHhcCCCcCeeecccccccChHHHHHHHhcCCCCCEEeecCCCCCChHHHHHHHhhCCCCCeEEeeeccCC
Q 046157 303 NFTLAGISFLLSKYQSLEHLNLEAANFLEDESMIDLSKFLTSLNFIDLGFCAKLTNSTFFTILRECPLLSEIKMETTNLG 382 (577)
Q Consensus 303 ~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~ 382 (577)
.... ....+..+++|+.|+++++. +....... ...+++|+.|+++++......... .....+|++|++++|.+.
T Consensus 164 l~~~--~~~~l~~l~~L~~L~l~~n~-i~~~~~~~-~~~l~~L~~L~l~~~~~~~~~~~~--~~~~~~L~~L~l~~n~l~ 237 (477)
T 2id5_A 164 LTSI--PTEALSHLHGLIVLRLRHLN-INAIRDYS-FKRLYRLKVLEISHWPYLDTMTPN--CLYGLNLTSLSITHCNLT 237 (477)
T ss_dssp CSSC--CHHHHTTCTTCCEEEEESCC-CCEECTTC-SCSCTTCCEEEEECCTTCCEECTT--TTTTCCCSEEEEESSCCC
T ss_pred Cccc--ChhHhcccCCCcEEeCCCCc-CcEeChhh-cccCcccceeeCCCCccccccCcc--cccCccccEEECcCCccc
Confidence 3221 11225567888888888766 22211111 123567777777765432211100 012346777777776654
Q ss_pred CCcccccccCCCCccEEEcCCCCCCCHHHHHHHHhhCCCccEEecCCCCCCCHHHHHHHHhhCCCCcEEEcccccccccc
Q 046157 383 LDDFTTPLVINPQVKSLHLARNGNLSDESLKKLAILCPNLEVIDLSHCLGITEEGIGEILKSCCEIKCLEIKRCRAVFDL 462 (577)
Q Consensus 383 ~~~~~~~~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~ 462 (577)
... ...+..+++|+.|++++|. +...... ....+++|+.|+++++ .++.... ..+..+++|+.|++++|. ++..
T Consensus 238 ~~~-~~~~~~l~~L~~L~Ls~n~-l~~~~~~-~~~~l~~L~~L~L~~n-~l~~~~~-~~~~~l~~L~~L~L~~N~-l~~~ 311 (477)
T 2id5_A 238 AVP-YLAVRHLVYLRFLNLSYNP-ISTIEGS-MLHELLRLQEIQLVGG-QLAVVEP-YAFRGLNYLRVLNVSGNQ-LTTL 311 (477)
T ss_dssp SCC-HHHHTTCTTCCEEECCSSC-CCEECTT-SCTTCTTCCEEECCSS-CCSEECT-TTBTTCTTCCEEECCSSC-CSCC
T ss_pred ccC-HHHhcCccccCeeECCCCc-CCccChh-hccccccCCEEECCCC-ccceECH-HHhcCcccCCEEECCCCc-Ccee
Confidence 322 2334566667777776654 3322111 1124566666666665 3332211 123456666666666664 3333
Q ss_pred c--ccccCCCceEEEccCCCCC
Q 046157 463 G--IDLELPKLEVLQASGSALN 482 (577)
Q Consensus 463 ~--~~~~~~~L~~L~l~~~~i~ 482 (577)
. ....+++|++|++++|.+.
T Consensus 312 ~~~~~~~l~~L~~L~l~~N~l~ 333 (477)
T 2id5_A 312 EESVFHSVGNLETLILDSNPLA 333 (477)
T ss_dssp CGGGBSCGGGCCEEECCSSCEE
T ss_pred CHhHcCCCcccCEEEccCCCcc
Confidence 2 2234566666666665443
No 47
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.65 E-value=1.7e-15 Score=145.87 Aligned_cols=37 Identities=5% Similarity=0.015 Sum_probs=18.5
Q ss_pred CCccEEecCCCCCCCHHHH---HHHHhhCCCCcEEEccccc
Q 046157 420 PNLEVIDLSHCLGITEEGI---GEILKSCCEIKCLEIKRCR 457 (577)
Q Consensus 420 ~~L~~L~l~~~~~~~~~~~---~~~~~~~~~L~~L~l~~~~ 457 (577)
++|++|++++| .+++.+. ..++..+++|+.|++++|.
T Consensus 225 ~~L~~L~Ls~N-~l~~~~~~~l~~~~~~l~~L~~L~L~~n~ 264 (362)
T 3goz_A 225 NHVVSLNLCLN-CLHGPSLENLKLLKDSLKHLQTVYLDYDI 264 (362)
T ss_dssp TTCCEEECCSS-CCCCCCHHHHHHTTTTTTTCSEEEEEHHH
T ss_pred CCceEEECcCC-CCCcHHHHHHHHHHhcCCCccEEEeccCC
Confidence 45666666665 3444322 2333444555555555554
No 48
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.64 E-value=2.2e-16 Score=156.11 Aligned_cols=240 Identities=16% Similarity=0.132 Sum_probs=111.0
Q ss_pred ccCcEEeccCCcccChhHHHHHHhcCCCCcEEEeccCCCCCHHHHHHHHhcCCCccEEEecCCCCCCcchhHHHHhhhhc
Q 046157 187 KRLKRINLSGNFFITDKSLMFLSSNLVLLREILIRDCDFITQSGISFAMRNSPNLVSISVNGIGIPTIDSCFKESFAYAR 266 (577)
Q Consensus 187 ~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 266 (577)
++|++|+++++. ++. +.. ...+++|++|+++++.... + ....++|++|++.++.+..+. .+..++
T Consensus 131 ~~L~~L~L~~n~-l~~--lp~-~~~l~~L~~L~l~~N~l~~---l---p~~~~~L~~L~L~~n~l~~l~-----~~~~l~ 195 (454)
T 1jl5_A 131 PLLEYLGVSNNQ-LEK--LPE-LQNSSFLKIIDVDNNSLKK---L---PDLPPSLEFIAAGNNQLEELP-----ELQNLP 195 (454)
T ss_dssp TTCCEEECCSSC-CSS--CCC-CTTCTTCCEEECCSSCCSC---C---CCCCTTCCEEECCSSCCSSCC-----CCTTCT
T ss_pred CCCCEEECcCCC-CCC--Ccc-cCCCCCCCEEECCCCcCcc---c---CCCcccccEEECcCCcCCcCc-----cccCCC
Confidence 467777776642 221 111 3446667777766653211 0 012346667766666554322 245666
Q ss_pred CCCEEEcCCCCCChHHHHHHHhcCCCCcEEEecCCCCCCHHHHHHHHhcCCCcCeeecccccccChHHHHHHHhcCCCCC
Q 046157 267 GLCEIDLSNSFISDELLRLLGEACLPLKKLVLSHCYNFTLAGISFLLSKYQSLEHLNLEAANFLEDESMIDLSKFLTSLN 346 (577)
Q Consensus 267 ~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~ 346 (577)
+|++|+++++.+.. +....++|+.|+++++.... +.. +..+++|++|+++++. ++.. ....++|+
T Consensus 196 ~L~~L~l~~N~l~~-----l~~~~~~L~~L~l~~n~l~~---lp~-~~~l~~L~~L~l~~N~-l~~l-----~~~~~~L~ 260 (454)
T 1jl5_A 196 FLTAIYADNNSLKK-----LPDLPLSLESIVAGNNILEE---LPE-LQNLPFLTTIYADNNL-LKTL-----PDLPPSLE 260 (454)
T ss_dssp TCCEEECCSSCCSS-----CCCCCTTCCEEECCSSCCSS---CCC-CTTCTTCCEEECCSSC-CSSC-----CSCCTTCC
T ss_pred CCCEEECCCCcCCc-----CCCCcCcccEEECcCCcCCc---ccc-cCCCCCCCEEECCCCc-CCcc-----cccccccC
Confidence 66666666665442 11123456666666653221 111 3345566666666654 2210 11235566
Q ss_pred EEeecCCCCCChHHHHHHHhhCCCCCeEEeeeccCCCCcccccccCCCCccEEEcCCCCCCCHHHHHHHHhhCCCccEEe
Q 046157 347 FIDLGFCAKLTNSTFFTILRECPLLSEIKMETTNLGLDDFTTPLVINPQVKSLHLARNGNLSDESLKKLAILCPNLEVID 426 (577)
Q Consensus 347 ~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~ 426 (577)
.|+++++. ++. +....++|+.|++++|.+.... . ..++|+.|++++|. ++. +....++|+.|+
T Consensus 261 ~L~l~~N~-l~~-----l~~~~~~L~~L~ls~N~l~~l~---~--~~~~L~~L~l~~N~-l~~-----i~~~~~~L~~L~ 323 (454)
T 1jl5_A 261 ALNVRDNY-LTD-----LPELPQSLTFLDVSENIFSGLS---E--LPPNLYYLNASSNE-IRS-----LCDLPPSLEELN 323 (454)
T ss_dssp EEECCSSC-CSC-----CCCCCTTCCEEECCSSCCSEES---C--CCTTCCEEECCSSC-CSE-----ECCCCTTCCEEE
T ss_pred EEECCCCc-ccc-----cCcccCcCCEEECcCCccCccc---C--cCCcCCEEECcCCc-CCc-----ccCCcCcCCEEE
Confidence 66665543 111 0112345666666555443211 0 11455566655544 222 111113555666
Q ss_pred cCCCCCCCHHHHHHHHhhCCCCcEEEcccccccccccccccCCCceEEEccCCCCC
Q 046157 427 LSHCLGITEEGIGEILKSCCEIKCLEIKRCRAVFDLGIDLELPKLEVLQASGSALN 482 (577)
Q Consensus 427 l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~i~ 482 (577)
++++ .++. +...+++|+.|++++|. ++.... .+++|++|++++|.++
T Consensus 324 Ls~N-~l~~-----lp~~~~~L~~L~L~~N~-l~~lp~--~l~~L~~L~L~~N~l~ 370 (454)
T 1jl5_A 324 VSNN-KLIE-----LPALPPRLERLIASFNH-LAEVPE--LPQNLKQLHVEYNPLR 370 (454)
T ss_dssp CCSS-CCSC-----CCCCCTTCCEEECCSSC-CSCCCC--CCTTCCEEECCSSCCS
T ss_pred CCCC-cccc-----ccccCCcCCEEECCCCc-cccccc--hhhhccEEECCCCCCC
Confidence 5554 2321 01123555555555554 332222 3455555555555544
No 49
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.64 E-value=4e-17 Score=161.43 Aligned_cols=50 Identities=18% Similarity=0.234 Sum_probs=23.8
Q ss_pred CCcEEEcccccccccccccccCCCceEEEccCCCCCHHHHHHHHHhCCCccEEecCCC
Q 046157 447 EIKCLEIKRCRAVFDLGIDLELPKLEVLQASGSALNDHALKMIANTCSRILHLDLDNC 504 (577)
Q Consensus 447 ~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~c 504 (577)
+|+.|++++|. +.. +...+++|+.|++++|.++.... .+++|+.|++++|
T Consensus 318 ~L~~L~Ls~N~-l~~--lp~~~~~L~~L~L~~N~l~~lp~-----~l~~L~~L~L~~N 367 (454)
T 1jl5_A 318 SLEELNVSNNK-LIE--LPALPPRLERLIASFNHLAEVPE-----LPQNLKQLHVEYN 367 (454)
T ss_dssp TCCEEECCSSC-CSC--CCCCCTTCCEEECCSSCCSCCCC-----CCTTCCEEECCSS
T ss_pred cCCEEECCCCc-ccc--ccccCCcCCEEECCCCccccccc-----hhhhccEEECCCC
Confidence 55555555544 222 11224556666666555542111 2455666666554
No 50
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.63 E-value=6.1e-15 Score=141.94 Aligned_cols=256 Identities=13% Similarity=0.104 Sum_probs=141.7
Q ss_pred EEcCCCCCChHHHHHHHhcCCCCcEEEecCCCCC--CHHHHHHHHhcCC-CcCeeecccccccChHHHHHHHh---c-CC
Q 046157 271 IDLSNSFISDELLRLLGEACLPLKKLVLSHCYNF--TLAGISFLLSKYQ-SLEHLNLEAANFLEDESMIDLSK---F-LT 343 (577)
Q Consensus 271 L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~--~~~~l~~~~~~~~-~L~~L~l~~~~~~~~~~~~~l~~---~-~~ 343 (577)
++++.+.++.... .+....++|++|+++++... ....+...+..++ +|++|+++++. +++.....+.. . ++
T Consensus 3 ~~ls~n~~~~~~~-~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~~~l~~~~~ 80 (362)
T 3goz_A 3 YKLTLHPGSNPVE-EFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNS-LGFKNSDELVQILAAIPA 80 (362)
T ss_dssp EECCCCTTCCHHH-HHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSC-GGGSCHHHHHHHHHTSCT
T ss_pred cccccccchHHHH-HHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCC-CCHHHHHHHHHHHhccCC
Confidence 5667777765433 34444566999999887532 2233334456677 89999998887 55544444333 2 37
Q ss_pred CCCEEeecCCC--CCChHHHHHHHhhC-CCCCeEEeeeccCCCCcc---cccccC-CCCccEEEcCCCCCCCHHHHHHHH
Q 046157 344 SLNFIDLGFCA--KLTNSTFFTILREC-PLLSEIKMETTNLGLDDF---TTPLVI-NPQVKSLHLARNGNLSDESLKKLA 416 (577)
Q Consensus 344 ~L~~L~l~~~~--~~~~~~l~~l~~~~-~~L~~L~l~~~~~~~~~~---~~~~~~-~~~L~~L~l~~~~~l~~~~l~~l~ 416 (577)
+|++|+++++. ......+......+ ++|++|++++|.++.... ...+.. .++|++|++++|. +++.+...+.
T Consensus 81 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~ 159 (362)
T 3goz_A 81 NVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGND-LGIKSSDELI 159 (362)
T ss_dssp TCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSC-GGGSCHHHHH
T ss_pred CccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCc-CCHHHHHHHH
Confidence 88888888865 22233344444455 788888888877654431 111223 3477777777765 5543333332
Q ss_pred ---hhCC-CccEEecCCCCCCCHHH---HHHHHhhC-CCCcEEEcccccccccccc------cc-cCCCceEEEccCCCC
Q 046157 417 ---ILCP-NLEVIDLSHCLGITEEG---IGEILKSC-CEIKCLEIKRCRAVFDLGI------DL-ELPKLEVLQASGSAL 481 (577)
Q Consensus 417 ---~~~~-~L~~L~l~~~~~~~~~~---~~~~~~~~-~~L~~L~l~~~~~l~~~~~------~~-~~~~L~~L~l~~~~i 481 (577)
...+ +|++|++++| .+++.+ +...+..+ ++|+.|++++|. +++.+. .. ..++|++|++++|.+
T Consensus 160 ~~l~~~~~~L~~L~Ls~n-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l 237 (362)
T 3goz_A 160 QILAAIPANVNSLNLRGN-NLASKNCAELAKFLASIPASVTSLDLSANL-LGLKSYAELAYIFSSIPNHVVSLNLCLNCL 237 (362)
T ss_dssp HHHHTSCTTCCEEECTTS-CGGGSCHHHHHHHHHTSCTTCCEEECTTSC-GGGSCHHHHHHHHHHSCTTCCEEECCSSCC
T ss_pred HHHhcCCccccEeeecCC-CCchhhHHHHHHHHHhCCCCCCEEECCCCC-CChhHHHHHHHHHhcCCCCceEEECcCCCC
Confidence 2233 6777777776 344332 33334445 367777777666 444221 11 134666666666666
Q ss_pred CHHHHHHH---HHhCCCccEEecCCCC--CCChhhHHHHHh---hCCCCcEEEecCCC
Q 046157 482 NDHALKMI---ANTCSRILHLDLDNCL--NVTTSGVKEVVE---HCRTLREINLRWCD 531 (577)
Q Consensus 482 ~~~~~~~l---~~~~~~L~~L~l~~c~--~l~~~~l~~~~~---~~~~L~~L~l~~c~ 531 (577)
++.+...+ ...+++|+.|++++|. .+++.++..+.. .+++|+.|++++++
T Consensus 238 ~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~ 295 (362)
T 3goz_A 238 HGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKE 295 (362)
T ss_dssp CCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCB
T ss_pred CcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCc
Confidence 65433222 2344566666666653 244444444433 33445556666653
No 51
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.62 E-value=2.7e-17 Score=172.08 Aligned_cols=137 Identities=17% Similarity=0.149 Sum_probs=67.0
Q ss_pred ccCCCCccEEEcCCCCCCCHHHHHHHHhhCCCccEEecCCCCCCCHHHHHHHHhhCCCCcEEEccccccccccc--cccc
Q 046157 390 LVINPQVKSLHLARNGNLSDESLKKLAILCPNLEVIDLSHCLGITEEGIGEILKSCCEIKCLEIKRCRAVFDLG--IDLE 467 (577)
Q Consensus 390 ~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~--~~~~ 467 (577)
+..+++++.++++++. +... .......+++|+.|+++++.... ......+..+++|+.|++++|. ++... ....
T Consensus 441 ~~~l~~l~~l~ls~n~-l~~~-~~~~~~~~~~L~~L~Ls~N~~~~-~~~~~~~~~l~~L~~L~Ls~N~-L~~l~~~~f~~ 516 (635)
T 4g8a_A 441 FLSLRNLIYLDISHTH-TRVA-FNGIFNGLSSLEVLKMAGNSFQE-NFLPDIFTELRNLTFLDLSQCQ-LEQLSPTAFNS 516 (635)
T ss_dssp TTTCTTCCEEECTTSC-CEEC-CTTTTTTCTTCCEEECTTCEEGG-GEECSCCTTCTTCCEEECTTSC-CCEECTTTTTT
T ss_pred cccccccccccccccc-cccc-cccccccchhhhhhhhhhccccc-ccCchhhhhccccCEEECCCCc-cCCcChHHHcC
Confidence 3445555555555443 1110 01112235666666666652111 1111224456677777777765 33332 2345
Q ss_pred CCCceEEEccCCCCCHHHHHHHHHhCCCccEEecCCCCCCChhhHHHHHhhC-CCCcEEEecCCCCC
Q 046157 468 LPKLEVLQASGSALNDHALKMIANTCSRILHLDLDNCLNVTTSGVKEVVEHC-RTLREINLRWCDEV 533 (577)
Q Consensus 468 ~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~c~~l~~~~l~~~~~~~-~~L~~L~l~~c~~~ 533 (577)
+++|++|++++|.++......+ ..+++|+.|+++++. ++...... +.++ ++|+.|+++++|-.
T Consensus 517 l~~L~~L~Ls~N~l~~l~~~~~-~~l~~L~~L~Ls~N~-l~~~~~~~-l~~l~~~L~~L~L~~Np~~ 580 (635)
T 4g8a_A 517 LSSLQVLNMSHNNFFSLDTFPY-KCLNSLQVLDYSLNH-IMTSKKQE-LQHFPSSLAFLNLTQNDFA 580 (635)
T ss_dssp CTTCCEEECTTSCCCBCCCGGG-TTCTTCCEEECTTSC-CCBCCSSC-TTCCCTTCCEEECTTCCBC
T ss_pred CCCCCEEECCCCcCCCCChhHH-hCCCCCCEEECCCCc-CCCCCHHH-HHhhhCcCCEEEeeCCCCc
Confidence 6677777777766554221111 245677777777653 44322111 2333 46777777665444
No 52
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.60 E-value=9.8e-17 Score=151.43 Aligned_cols=128 Identities=13% Similarity=0.167 Sum_probs=64.2
Q ss_pred CCCccEEecCCCCCCCHHHHHHHHhhCCCCcEEEcccccccccccccccCCCceEEEccCCCCCHHHHHHHHHhCCCccE
Q 046157 419 CPNLEVIDLSHCLGITEEGIGEILKSCCEIKCLEIKRCRAVFDLGIDLELPKLEVLQASGSALNDHALKMIANTCSRILH 498 (577)
Q Consensus 419 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~ 498 (577)
+++|+.|+++++ .++......+...+++|+.|++++|. ++.......+++|++|++++|.++..... ...+++|+.
T Consensus 143 l~~L~~L~Ls~N-~l~~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~l~~L~~L~Ls~N~l~~l~~~--~~~l~~L~~ 218 (317)
T 3o53_A 143 RSRVQYLDLKLN-EIDTVNFAELAASSDTLEHLNLQYNF-IYDVKGQVVFAKLKTLDLSSNKLAFMGPE--FQSAAGVTW 218 (317)
T ss_dssp GSSEEEEECTTS-CCCEEEGGGGGGGTTTCCEEECTTSC-CCEEECCCCCTTCCEEECCSSCCCEECGG--GGGGTTCSE
T ss_pred cCCCCEEECCCC-CCCcccHHHHhhccCcCCEEECCCCc-CcccccccccccCCEEECCCCcCCcchhh--hcccCcccE
Confidence 355555555554 33332222223345566666666655 33333223456666666666655532111 224566666
Q ss_pred EecCCCCCCChhhHHHHHhhCCCCcEEEecCCCCCcHHHHHHHHHhCCCCceeccC
Q 046157 499 LDLDNCLNVTTSGVKEVVEHCRTLREINLRWCDEVNVDIVAWMVFSRPSLRKIIPP 554 (577)
Q Consensus 499 L~l~~c~~l~~~~l~~~~~~~~~L~~L~l~~c~~~~~~~~~~~~~~~~~L~~l~~~ 554 (577)
|++++|. ++. +...+..+++|+.|++++++...+ ........+++|+.+++.
T Consensus 219 L~L~~N~-l~~--l~~~~~~l~~L~~L~l~~N~~~~~-~~~~~~~~~~~L~~l~l~ 270 (317)
T 3o53_A 219 ISLRNNK-LVL--IEKALRFSQNLEHFDLRGNGFHCG-TLRDFFSKNQRVQTVAKQ 270 (317)
T ss_dssp EECTTSC-CCE--ECTTCCCCTTCCEEECTTCCCBHH-HHHHHHHTCHHHHHHHHH
T ss_pred EECcCCc-ccc--hhhHhhcCCCCCEEEccCCCccCc-CHHHHHhccccceEEECC
Confidence 6666653 442 122234556677777766643322 344444556666665554
No 53
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.58 E-value=1.3e-15 Score=145.02 Aligned_cols=108 Identities=17% Similarity=0.171 Sum_probs=49.6
Q ss_pred hCCCCCeEEeeeccCCCCcccccccCCCCccEEEcCCCCCCCHHHHHHHHhhCCCccEEecCCCCCCCHHHHHHHHhhCC
Q 046157 367 ECPLLSEIKMETTNLGLDDFTTPLVINPQVKSLHLARNGNLSDESLKKLAILCPNLEVIDLSHCLGITEEGIGEILKSCC 446 (577)
Q Consensus 367 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 446 (577)
.+++|+.|++++|.+.... .. ..++|+.|++++|. ++...... ...+++|+.|+++++ .++.... ..+..++
T Consensus 169 ~l~~L~~L~l~~n~l~~l~--~~--~~~~L~~L~l~~n~-l~~~~~~~-~~~l~~L~~L~Ls~n-~l~~~~~-~~~~~l~ 240 (330)
T 1xku_A 169 GMKKLSYIRIADTNITTIP--QG--LPPSLTELHLDGNK-ITKVDAAS-LKGLNNLAKLGLSFN-SISAVDN-GSLANTP 240 (330)
T ss_dssp GCTTCCEEECCSSCCCSCC--SS--CCTTCSEEECTTSC-CCEECTGG-GTTCTTCCEEECCSS-CCCEECT-TTGGGST
T ss_pred CCCCcCEEECCCCccccCC--cc--ccccCCEEECCCCc-CCccCHHH-hcCCCCCCEEECCCC-cCceeCh-hhccCCC
Confidence 4555666666555543211 11 12556666666554 33221111 123456666666555 2332111 1134455
Q ss_pred CCcEEEccccccccccc-ccccCCCceEEEccCCCCCH
Q 046157 447 EIKCLEIKRCRAVFDLG-IDLELPKLEVLQASGSALND 483 (577)
Q Consensus 447 ~L~~L~l~~~~~l~~~~-~~~~~~~L~~L~l~~~~i~~ 483 (577)
+|+.|++++|. ++... ....+++|++|++++|.++.
T Consensus 241 ~L~~L~L~~N~-l~~lp~~l~~l~~L~~L~l~~N~i~~ 277 (330)
T 1xku_A 241 HLRELHLNNNK-LVKVPGGLADHKYIQVVYLHNNNISA 277 (330)
T ss_dssp TCCEEECCSSC-CSSCCTTTTTCSSCCEEECCSSCCCC
T ss_pred CCCEEECCCCc-CccCChhhccCCCcCEEECCCCcCCc
Confidence 66666666654 33222 22345556666666555543
No 54
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.55 E-value=3.5e-15 Score=143.33 Aligned_cols=162 Identities=11% Similarity=0.059 Sum_probs=98.6
Q ss_pred hCCCCCeEEeeeccCCCCcccccccCCCCccEEEcCCCCCCCHHHHHHHHhhCCCccEEecCCCCCCCHHHHHHHHhhCC
Q 046157 367 ECPLLSEIKMETTNLGLDDFTTPLVINPQVKSLHLARNGNLSDESLKKLAILCPNLEVIDLSHCLGITEEGIGEILKSCC 446 (577)
Q Consensus 367 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 446 (577)
.+++|++|++++|..........+..+++|+.|++++|. +....... ...+++|++|+++++. ++... ......++
T Consensus 147 ~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~-l~~l~~L~~L~l~~n~-l~~~~-~~~~~~~~ 222 (353)
T 2z80_A 147 HLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASD-LQSYEPKS-LKSIQNVSHLILHMKQ-HILLL-EIFVDVTS 222 (353)
T ss_dssp TCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETT-CCEECTTT-TTTCSEEEEEEEECSC-STTHH-HHHHHHTT
T ss_pred cCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCC-cCccCHHH-HhccccCCeecCCCCc-cccch-hhhhhhcc
Confidence 456666666666532222113345566677777776654 33221111 2245677777777763 43222 23345577
Q ss_pred CCcEEEccccccccccc-----ccccCCCceEEEccCCCCCHHHHHHH---HHhCCCccEEecCCCCCCChhhHHHHHhh
Q 046157 447 EIKCLEIKRCRAVFDLG-----IDLELPKLEVLQASGSALNDHALKMI---ANTCSRILHLDLDNCLNVTTSGVKEVVEH 518 (577)
Q Consensus 447 ~L~~L~l~~~~~l~~~~-----~~~~~~~L~~L~l~~~~i~~~~~~~l---~~~~~~L~~L~l~~c~~l~~~~l~~~~~~ 518 (577)
+|+.|++++|. ++... .....+.++.++++++.+++..+..+ ...+++|+.|++++|. ++... ..++..
T Consensus 223 ~L~~L~L~~n~-l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~-l~~i~-~~~~~~ 299 (353)
T 2z80_A 223 SVECLELRDTD-LDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQ-LKSVP-DGIFDR 299 (353)
T ss_dssp TEEEEEEESCB-CTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSC-CCCCC-TTTTTT
T ss_pred cccEEECCCCc-cccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCC-CCccC-HHHHhc
Confidence 77777777776 33322 12245678888888888888765554 3468899999999974 66322 233477
Q ss_pred CCCCcEEEecCCCCCcH
Q 046157 519 CRTLREINLRWCDEVNV 535 (577)
Q Consensus 519 ~~~L~~L~l~~c~~~~~ 535 (577)
+++|++|++++++-..+
T Consensus 300 l~~L~~L~L~~N~~~~~ 316 (353)
T 2z80_A 300 LTSLQKIWLHTNPWDCS 316 (353)
T ss_dssp CTTCCEEECCSSCBCCC
T ss_pred CCCCCEEEeeCCCccCc
Confidence 89999999999876653
No 55
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.55 E-value=1.2e-15 Score=144.08 Aligned_cols=251 Identities=14% Similarity=0.106 Sum_probs=182.5
Q ss_pred CcchhHHHHhhhhcCCCEEEcCCCCCChHHHHHHHhcCCCCcEEEecCCCCCCHHHHHHHHhcCCCcCeeecccccccCh
Q 046157 253 TIDSCFKESFAYARGLCEIDLSNSFISDELLRLLGEACLPLKKLVLSHCYNFTLAGISFLLSKYQSLEHLNLEAANFLED 332 (577)
Q Consensus 253 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~ 332 (577)
.+.......+..+++|++|+++++.+.......+ ..+++|+.|+++++....... +..+++|++|+++++. ++.
T Consensus 21 ~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~-~~l~~L~~L~Ls~n~l~~~~~----~~~l~~L~~L~Ls~n~-l~~ 94 (317)
T 3o53_A 21 SLKQALASLRQSAWNVKELDLSGNPLSQISAADL-APFTKLELLNLSSNVLYETLD----LESLSTLRTLDLNNNY-VQE 94 (317)
T ss_dssp THHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHH-TTCTTCCEEECTTSCCEEEEE----ETTCTTCCEEECCSSE-EEE
T ss_pred chhhhHHHHhccCCCCCEEECcCCccCcCCHHHh-hCCCcCCEEECCCCcCCcchh----hhhcCCCCEEECcCCc-ccc
Confidence 3444445556678899999999998876544444 448999999999976432221 4668999999999987 433
Q ss_pred HHHHHHHhcCCCCCEEeecCCCCCChHHHHHHHhhCCCCCeEEeeeccCCCCcccccccCCCCccEEEcCCCCCCCHHHH
Q 046157 333 ESMIDLSKFLTSLNFIDLGFCAKLTNSTFFTILRECPLLSEIKMETTNLGLDDFTTPLVINPQVKSLHLARNGNLSDESL 412 (577)
Q Consensus 333 ~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~l 412 (577)
.. ..++|+.|+++++. ++... ...+++|++|++++|.+.... ...+..+++|+.|++++|. +.....
T Consensus 95 l~------~~~~L~~L~l~~n~-l~~~~----~~~~~~L~~L~l~~N~l~~~~-~~~~~~l~~L~~L~Ls~N~-l~~~~~ 161 (317)
T 3o53_A 95 LL------VGPSIETLHAANNN-ISRVS----CSRGQGKKNIYLANNKITMLR-DLDEGCRSRVQYLDLKLNE-IDTVNF 161 (317)
T ss_dssp EE------ECTTCCEEECCSSC-CSEEE----ECCCSSCEEEECCSSCCCSGG-GBCTGGGSSEEEEECTTSC-CCEEEG
T ss_pred cc------CCCCcCEEECCCCc-cCCcC----ccccCCCCEEECCCCCCCCcc-chhhhccCCCCEEECCCCC-CCcccH
Confidence 21 35899999999865 33322 124789999999999886643 4466788999999999976 665444
Q ss_pred HHHHhhCCCccEEecCCCCCCCHHHHHHHHhhCCCCcEEEccccccccccc-ccccCCCceEEEccCCCCCHHHHHHHHH
Q 046157 413 KKLAILCPNLEVIDLSHCLGITEEGIGEILKSCCEIKCLEIKRCRAVFDLG-IDLELPKLEVLQASGSALNDHALKMIAN 491 (577)
Q Consensus 413 ~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~-~~~~~~~L~~L~l~~~~i~~~~~~~l~~ 491 (577)
..+...+++|++|++++| .++... . ...+++|+.|++++|. ++... ....+++|+.|++++|.++.. .....
T Consensus 162 ~~~~~~l~~L~~L~L~~N-~l~~~~--~-~~~l~~L~~L~Ls~N~-l~~l~~~~~~l~~L~~L~L~~N~l~~l--~~~~~ 234 (317)
T 3o53_A 162 AELAASSDTLEHLNLQYN-FIYDVK--G-QVVFAKLKTLDLSSNK-LAFMGPEFQSAAGVTWISLRNNKLVLI--EKALR 234 (317)
T ss_dssp GGGGGGTTTCCEEECTTS-CCCEEE--C-CCCCTTCCEEECCSSC-CCEECGGGGGGTTCSEEECTTSCCCEE--CTTCC
T ss_pred HHHhhccCcCCEEECCCC-cCcccc--c-ccccccCCEEECCCCc-CCcchhhhcccCcccEEECcCCcccch--hhHhh
Confidence 445556799999999998 454421 1 2248899999999997 44442 345789999999999988742 11223
Q ss_pred hCCCccEEecCCCCCCChhhHHHHHhhCCCCcEEEecCC
Q 046157 492 TCSRILHLDLDNCLNVTTSGVKEVVEHCRTLREINLRWC 530 (577)
Q Consensus 492 ~~~~L~~L~l~~c~~l~~~~l~~~~~~~~~L~~L~l~~c 530 (577)
.+++|+.|++++|+ ++...+...+..+++|+.+++.++
T Consensus 235 ~l~~L~~L~l~~N~-~~~~~~~~~~~~~~~L~~l~l~~~ 272 (317)
T 3o53_A 235 FSQNLEHFDLRGNG-FHCGTLRDFFSKNQRVQTVAKQTV 272 (317)
T ss_dssp CCTTCCEEECTTCC-CBHHHHHHHHHTCHHHHHHHHHHH
T ss_pred cCCCCCEEEccCCC-ccCcCHHHHHhccccceEEECCCc
Confidence 57899999999976 665566777788888888887754
No 56
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.55 E-value=5e-16 Score=147.79 Aligned_cols=224 Identities=13% Similarity=0.067 Sum_probs=141.8
Q ss_pred hcCCCcCeeecccccccChHHHHHHHhcCCCCCEEeecCCCCCChHHHHHHHhhCCCCCeEEeeeccCCCCc-ccccccC
Q 046157 314 SKYQSLEHLNLEAANFLEDESMIDLSKFLTSLNFIDLGFCAKLTNSTFFTILRECPLLSEIKMETTNLGLDD-FTTPLVI 392 (577)
Q Consensus 314 ~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~-~~~~~~~ 392 (577)
..+++|++|+++++. ++... ....++|++|+++++. +..... .....+++|+.|++++|.+.... ....+..
T Consensus 97 ~~l~~L~~L~Ls~n~-l~~l~----~~~~~~L~~L~l~~n~-l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~ 169 (330)
T 1xku_A 97 APLVKLERLYLSKNQ-LKELP----EKMPKTLQELRVHENE-ITKVRK-SVFNGLNQMIVVELGTNPLKSSGIENGAFQG 169 (330)
T ss_dssp TTCTTCCEEECCSSC-CSBCC----SSCCTTCCEEECCSSC-CCBBCH-HHHTTCTTCCEEECCSSCCCGGGBCTTGGGG
T ss_pred cCCCCCCEEECCCCc-CCccC----hhhcccccEEECCCCc-ccccCH-hHhcCCccccEEECCCCcCCccCcChhhccC
Confidence 345566666666654 22110 0113678888887754 332211 22346888999999888775432 3456788
Q ss_pred CCCccEEEcCCCCCCCHHHHHHHHhhCCCccEEecCCCCCCCHHHHHHHHhhCCCCcEEEccccccccccc--ccccCCC
Q 046157 393 NPQVKSLHLARNGNLSDESLKKLAILCPNLEVIDLSHCLGITEEGIGEILKSCCEIKCLEIKRCRAVFDLG--IDLELPK 470 (577)
Q Consensus 393 ~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~--~~~~~~~ 470 (577)
+++|+.|+++++. ++... ....++|++|+++++ .++.... ..+..+++|+.|++++|. ++... ....+++
T Consensus 170 l~~L~~L~l~~n~-l~~l~----~~~~~~L~~L~l~~n-~l~~~~~-~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~ 241 (330)
T 1xku_A 170 MKKLSYIRIADTN-ITTIP----QGLPPSLTELHLDGN-KITKVDA-ASLKGLNNLAKLGLSFNS-ISAVDNGSLANTPH 241 (330)
T ss_dssp CTTCCEEECCSSC-CCSCC----SSCCTTCSEEECTTS-CCCEECT-GGGTTCTTCCEEECCSSC-CCEECTTTGGGSTT
T ss_pred CCCcCEEECCCCc-cccCC----ccccccCCEEECCCC-cCCccCH-HHhcCCCCCCEEECCCCc-CceeChhhccCCCC
Confidence 9999999999876 43211 112479999999998 4554322 235678999999999997 44433 3457899
Q ss_pred ceEEEccCCCCCHHHHHHHHHhCCCccEEecCCCCCCChhhHHHHH-----hhCCCCcEEEecCCCCCcHHHHHHHHHhC
Q 046157 471 LEVLQASGSALNDHALKMIANTCSRILHLDLDNCLNVTTSGVKEVV-----EHCRTLREINLRWCDEVNVDIVAWMVFSR 545 (577)
Q Consensus 471 L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~c~~l~~~~l~~~~-----~~~~~L~~L~l~~c~~~~~~~~~~~~~~~ 545 (577)
|+.|++++|.++... .....+++|++|++++|. ++..+...+. ...+.|+.|++++.|..........+..+
T Consensus 242 L~~L~L~~N~l~~lp--~~l~~l~~L~~L~l~~N~-i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~ 318 (330)
T 1xku_A 242 LRELHLNNNKLVKVP--GGLADHKYIQVVYLHNNN-ISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCV 318 (330)
T ss_dssp CCEEECCSSCCSSCC--TTTTTCSSCCEEECCSSC-CCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTC
T ss_pred CCEEECCCCcCccCC--hhhccCCCcCEEECCCCc-CCccChhhcCCcccccccccccceEeecCcccccccCccccccc
Confidence 999999999887321 112357899999999874 6654332221 12477899999998754322222344557
Q ss_pred CCCceeccCC
Q 046157 546 PSLRKIIPPC 555 (577)
Q Consensus 546 ~~L~~l~~~~ 555 (577)
+.++.++++.
T Consensus 319 ~~l~~l~L~~ 328 (330)
T 1xku_A 319 YVRAAVQLGN 328 (330)
T ss_dssp CCGGGEEC--
T ss_pred cceeEEEecc
Confidence 7788877763
No 57
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.51 E-value=2.9e-16 Score=149.50 Aligned_cols=62 Identities=13% Similarity=0.166 Sum_probs=33.5
Q ss_pred CCCcEEEeccCCCCCHHHHHHHHhcCCCccEEEecCCCCCCcchhHHHHhhhhcCCCEEEcCCCCCC
Q 046157 213 VLLREILIRDCDFITQSGISFAMRNSPNLVSISVNGIGIPTIDSCFKESFAYARGLCEIDLSNSFIS 279 (577)
Q Consensus 213 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 279 (577)
++++.|+++++.. .... ...+..+++|+.|++.++.+..+ .+..+..+++|++|+++++.+.
T Consensus 54 ~~l~~L~l~~n~i-~~~~-~~~~~~l~~L~~L~L~~n~l~~~---~~~~~~~l~~L~~L~L~~n~l~ 115 (332)
T 2ft3_A 54 PDTTLLDLQNNDI-SELR-KDDFKGLQHLYALVLVNNKISKI---HEKAFSPLRKLQKLYISKNHLV 115 (332)
T ss_dssp TTCCEEECCSSCC-CEEC-TTTTTTCTTCCEEECCSSCCCEE---CGGGSTTCTTCCEEECCSSCCC
T ss_pred CCCeEEECCCCcC-CccC-HhHhhCCCCCcEEECCCCccCcc---CHhHhhCcCCCCEEECCCCcCC
Confidence 5677777776532 2110 11234566777777776654322 2334556666777777666544
No 58
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.51 E-value=3.2e-16 Score=149.20 Aligned_cols=80 Identities=21% Similarity=0.213 Sum_probs=43.8
Q ss_pred CCcEEEeccCCCCCHHHHHHHHhcCCCccEEEecCCCCCCcchhHHHHhhhhcCCCEEEcCCCCCChHHHHHHHhcCCCC
Q 046157 214 LLREILIRDCDFITQSGISFAMRNSPNLVSISVNGIGIPTIDSCFKESFAYARGLCEIDLSNSFISDELLRLLGEACLPL 293 (577)
Q Consensus 214 ~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L 293 (577)
+++.++++++.. ... +. .-.++++.|++.++.+..+. +..+..+++|++|+++++.+.......+ ..+++|
T Consensus 34 ~l~~l~~~~~~l-~~i--p~--~~~~~l~~L~l~~n~i~~~~---~~~~~~l~~L~~L~L~~n~l~~~~~~~~-~~l~~L 104 (332)
T 2ft3_A 34 HLRVVQCSDLGL-KAV--PK--EISPDTTLLDLQNNDISELR---KDDFKGLQHLYALVLVNNKISKIHEKAF-SPLRKL 104 (332)
T ss_dssp ETTEEECCSSCC-SSC--CS--CCCTTCCEEECCSSCCCEEC---TTTTTTCTTCCEEECCSSCCCEECGGGS-TTCTTC
T ss_pred cCCEEECCCCCc-ccc--CC--CCCCCCeEEECCCCcCCccC---HhHhhCCCCCcEEECCCCccCccCHhHh-hCcCCC
Confidence 577777766432 110 00 11357788888776653322 2345667777777777776654222222 235666
Q ss_pred cEEEecCCC
Q 046157 294 KKLVLSHCY 302 (577)
Q Consensus 294 ~~L~l~~~~ 302 (577)
++|+++++.
T Consensus 105 ~~L~L~~n~ 113 (332)
T 2ft3_A 105 QKLYISKNH 113 (332)
T ss_dssp CEEECCSSC
T ss_pred CEEECCCCc
Confidence 666666653
No 59
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.50 E-value=1.2e-15 Score=159.46 Aligned_cols=136 Identities=18% Similarity=0.148 Sum_probs=93.4
Q ss_pred hCCCCCeEEeeeccCCCCcccccccCCCCccEEEcCCCCCCCHHHHHHHHhhCCCccEEecCCCCCCCHHHHHHHHhhCC
Q 046157 367 ECPLLSEIKMETTNLGLDDFTTPLVINPQVKSLHLARNGNLSDESLKKLAILCPNLEVIDLSHCLGITEEGIGEILKSCC 446 (577)
Q Consensus 367 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 446 (577)
.+++++.++++.|.+.... ...+...++|+.|++++|..... ........+++|+.|++++| .++... ...+.+++
T Consensus 443 ~l~~l~~l~ls~n~l~~~~-~~~~~~~~~L~~L~Ls~N~~~~~-~~~~~~~~l~~L~~L~Ls~N-~L~~l~-~~~f~~l~ 518 (635)
T 4g8a_A 443 SLRNLIYLDISHTHTRVAF-NGIFNGLSSLEVLKMAGNSFQEN-FLPDIFTELRNLTFLDLSQC-QLEQLS-PTAFNSLS 518 (635)
T ss_dssp TCTTCCEEECTTSCCEECC-TTTTTTCTTCCEEECTTCEEGGG-EECSCCTTCTTCCEEECTTS-CCCEEC-TTTTTTCT
T ss_pred ccccccccccccccccccc-ccccccchhhhhhhhhhcccccc-cCchhhhhccccCEEECCCC-ccCCcC-hHHHcCCC
Confidence 4667777777776654332 44567789999999998753221 11112345789999999998 555422 22367899
Q ss_pred CCcEEEccccccccccc--ccccCCCceEEEccCCCCCHHHHHHHHHhCCCccEEecCCCCCC
Q 046157 447 EIKCLEIKRCRAVFDLG--IDLELPKLEVLQASGSALNDHALKMIANTCSRILHLDLDNCLNV 507 (577)
Q Consensus 447 ~L~~L~l~~~~~l~~~~--~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~c~~l 507 (577)
+|+.|+|++|. ++... ....+++|+.|++++|.++......+....++|+.|++++++-.
T Consensus 519 ~L~~L~Ls~N~-l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~ 580 (635)
T 4g8a_A 519 SLQVLNMSHNN-FFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFA 580 (635)
T ss_dssp TCCEEECTTSC-CCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBC
T ss_pred CCCEEECCCCc-CCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCc
Confidence 99999999997 55443 34578999999999998876433333222368999999987643
No 60
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.49 E-value=8.6e-14 Score=130.88 Aligned_cols=204 Identities=16% Similarity=0.173 Sum_probs=133.7
Q ss_pred cCCCcCeeecccccccChHHHHHH-HhcCCCCCEEeecCCCCCCh--HHHHHHHhh-CCCCCeEEeeeccCCCCcccccc
Q 046157 315 KYQSLEHLNLEAANFLEDESMIDL-SKFLTSLNFIDLGFCAKLTN--STFFTILRE-CPLLSEIKMETTNLGLDDFTTPL 390 (577)
Q Consensus 315 ~~~~L~~L~l~~~~~~~~~~~~~l-~~~~~~L~~L~l~~~~~~~~--~~l~~l~~~-~~~L~~L~l~~~~~~~~~~~~~~ 390 (577)
.+++|++|+++++. +++.....+ ...+++|++|+++++. ++. ..+..+... +++|++|++++|.+.... ...+
T Consensus 93 ~l~~L~~L~L~~n~-l~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~-~~~~ 169 (312)
T 1wwl_A 93 GISGLQELTLENLE-VTGTAPPPLLEATGPDLNILNLRNVS-WATRDAWLAELQQWLKPGLKVLSIAQAHSLNFS-CEQV 169 (312)
T ss_dssp TTSCCCEEEEEEEB-CBSCCCCCSSSCCSCCCSEEEEESCB-CSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCC-TTTC
T ss_pred CcCCccEEEccCCc-ccchhHHHHHHhcCCCccEEEccCCC-CcchhHHHHHHHHhhcCCCcEEEeeCCCCccch-HHHh
Confidence 45667777776665 322111111 1346778888887754 222 223322211 388999999998876543 4677
Q ss_pred cCCCCccEEEcCCCCCCCHHHHHHHH--hhCCCccEEecCCCCCCCH--HHHHHHHhhCCCCcEEEccccccccc-c--c
Q 046157 391 VINPQVKSLHLARNGNLSDESLKKLA--ILCPNLEVIDLSHCLGITE--EGIGEILKSCCEIKCLEIKRCRAVFD-L--G 463 (577)
Q Consensus 391 ~~~~~L~~L~l~~~~~l~~~~l~~l~--~~~~~L~~L~l~~~~~~~~--~~~~~~~~~~~~L~~L~l~~~~~l~~-~--~ 463 (577)
..+++|+.|++++|.......+..-. ..+++|++|++++| .++. .....++..+++|+.|++++|. ++. . .
T Consensus 170 ~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~ 247 (312)
T 1wwl_A 170 RVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNA-GMETPSGVCSALAAARVQLQGLDLSHNS-LRDAAGAP 247 (312)
T ss_dssp CCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTS-CCCCHHHHHHHHHHTTCCCSEEECTTSC-CCSSCCCS
T ss_pred ccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCC-cCcchHHHHHHHHhcCCCCCEEECCCCc-CCcccchh
Confidence 88999999999998733333222222 56799999999998 5653 2234556788999999999998 443 2 2
Q ss_pred ccccCCCceEEEccCCCCCHHHHHHHHHhCCCccEEecCCCCCCChhhHHHHHhhCCCCcEEEecCCC
Q 046157 464 IDLELPKLEVLQASGSALNDHALKMIANTCSRILHLDLDNCLNVTTSGVKEVVEHCRTLREINLRWCD 531 (577)
Q Consensus 464 ~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~c~~l~~~~l~~~~~~~~~L~~L~l~~c~ 531 (577)
....+++|+.|++++|.++... ..+ .++|++|+++++ .++... . +..+++|++|++++++
T Consensus 248 ~~~~l~~L~~L~Ls~N~l~~ip-~~~---~~~L~~L~Ls~N-~l~~~p--~-~~~l~~L~~L~L~~N~ 307 (312)
T 1wwl_A 248 SCDWPSQLNSLNLSFTGLKQVP-KGL---PAKLSVLDLSYN-RLDRNP--S-PDELPQVGNLSLKGNP 307 (312)
T ss_dssp CCCCCTTCCEEECTTSCCSSCC-SSC---CSEEEEEECCSS-CCCSCC--C-TTTSCEEEEEECTTCT
T ss_pred hhhhcCCCCEEECCCCccChhh-hhc---cCCceEEECCCC-CCCCCh--h-HhhCCCCCEEeccCCC
Confidence 3345789999999999887311 111 268999999986 466542 2 4678888888888864
No 61
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.49 E-value=2.7e-15 Score=149.89 Aligned_cols=57 Identities=21% Similarity=0.216 Sum_probs=29.6
Q ss_pred CCccEEEecCCCCCCcchhHHHHhhhhcCCCEEEcCCCCCChHHHHHHHhcCCCCcEEEecCC
Q 046157 239 PNLVSISVNGIGIPTIDSCFKESFAYARGLCEIDLSNSFISDELLRLLGEACLPLKKLVLSHC 301 (577)
Q Consensus 239 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~ 301 (577)
++|+.|+++++.+.... +..+..+++|++|++++|.+..... ...+++|+.|+++++
T Consensus 34 ~~L~~L~Ls~n~l~~~~---~~~~~~l~~L~~L~Ls~N~l~~~~~---l~~l~~L~~L~Ls~N 90 (487)
T 3oja_A 34 WNVKELDLSGNPLSQIS---AADLAPFTKLELLNLSSNVLYETLD---LESLSTLRTLDLNNN 90 (487)
T ss_dssp GGCCEEECCSSCCCCCC---GGGGTTCTTCCEEECTTSCCEEEEE---CTTCTTCCEEECCSS
T ss_pred CCccEEEeeCCcCCCCC---HHHHhCCCCCCEEEeeCCCCCCCcc---cccCCCCCEEEecCC
Confidence 46777777766543322 2344556666666666665542111 222455555555554
No 62
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.48 E-value=1.9e-13 Score=139.33 Aligned_cols=243 Identities=16% Similarity=0.154 Sum_probs=148.9
Q ss_pred ccCcEEeccCCcccChhHHHHHHhcCCCCcEEEeccCCCCCHHHHHHHHhcCCCccEEEecCCCCCCcchhHHHHhhhhc
Q 046157 187 KRLKRINLSGNFFITDKSLMFLSSNLVLLREILIRDCDFITQSGISFAMRNSPNLVSISVNGIGIPTIDSCFKESFAYAR 266 (577)
Q Consensus 187 ~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 266 (577)
++|+.|+++++. ++. +. ..+++|++|+++++.. +. +...+++|++|++.++.+..+.. .++
T Consensus 61 ~~L~~L~L~~N~-l~~--lp---~~l~~L~~L~Ls~N~l-~~-----lp~~l~~L~~L~Ls~N~l~~l~~-------~l~ 121 (622)
T 3g06_A 61 AHITTLVIPDNN-LTS--LP---ALPPELRTLEVSGNQL-TS-----LPVLPPGLLELSIFSNPLTHLPA-------LPS 121 (622)
T ss_dssp TTCSEEEECSCC-CSC--CC---CCCTTCCEEEECSCCC-SC-----CCCCCTTCCEEEECSCCCCCCCC-------CCT
T ss_pred CCCcEEEecCCC-CCC--CC---CcCCCCCEEEcCCCcC-Cc-----CCCCCCCCCEEECcCCcCCCCCC-------CCC
Confidence 679999999863 321 11 2478899999988752 21 11257889999998887755443 457
Q ss_pred CCCEEEcCCCCCChHHHHHHHhcCCCCcEEEecCCCCCCHHHHHHHHhcCCCcCeeecccccccChHHHHHHHhcCCCCC
Q 046157 267 GLCEIDLSNSFISDELLRLLGEACLPLKKLVLSHCYNFTLAGISFLLSKYQSLEHLNLEAANFLEDESMIDLSKFLTSLN 346 (577)
Q Consensus 267 ~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~ 346 (577)
+|++|++++|.+.. +...+++|++|+++++.... + ....++|+.|+++++. ++... ..+++|+
T Consensus 122 ~L~~L~L~~N~l~~-----lp~~l~~L~~L~Ls~N~l~~---l---~~~~~~L~~L~L~~N~-l~~l~-----~~~~~L~ 184 (622)
T 3g06_A 122 GLCKLWIFGNQLTS-----LPVLPPGLQELSVSDNQLAS---L---PALPSELCKLWAYNNQ-LTSLP-----MLPSGLQ 184 (622)
T ss_dssp TCCEEECCSSCCSC-----CCCCCTTCCEEECCSSCCSC---C---CCCCTTCCEEECCSSC-CSCCC-----CCCTTCC
T ss_pred CcCEEECCCCCCCc-----CCCCCCCCCEEECcCCcCCC---c---CCccCCCCEEECCCCC-CCCCc-----ccCCCCc
Confidence 88888888886654 22235788888888764322 1 1234678888887776 33311 3457788
Q ss_pred EEeecCCCCCChHHHHHHHhhCCCCCeEEeeeccCCCCcccccccCCCCccEEEcCCCCCCCHHHHHHHHhhCCCccEEe
Q 046157 347 FIDLGFCAKLTNSTFFTILRECPLLSEIKMETTNLGLDDFTTPLVINPQVKSLHLARNGNLSDESLKKLAILCPNLEVID 426 (577)
Q Consensus 347 ~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~ 426 (577)
.|+++++. ++. +....++|+.|++.+|.+..-. ...++|+.|++++|. ++. +...+++|+.|+
T Consensus 185 ~L~Ls~N~-l~~-----l~~~~~~L~~L~L~~N~l~~l~-----~~~~~L~~L~Ls~N~-L~~-----lp~~l~~L~~L~ 247 (622)
T 3g06_A 185 ELSVSDNQ-LAS-----LPTLPSELYKLWAYNNRLTSLP-----ALPSGLKELIVSGNR-LTS-----LPVLPSELKELM 247 (622)
T ss_dssp EEECCSSC-CSC-----CCCCCTTCCEEECCSSCCSSCC-----CCCTTCCEEECCSSC-CSC-----CCCCCTTCCEEE
T ss_pred EEECCCCC-CCC-----CCCccchhhEEECcCCcccccC-----CCCCCCCEEEccCCc-cCc-----CCCCCCcCcEEE
Confidence 88877754 221 1113467777777777654322 124677777777764 433 113456777777
Q ss_pred cCCCCCCCHHHHHHHHhhCCCCcEEEccccccccccc-ccccCCCceEEEccCCCCCHHHHHHH
Q 046157 427 LSHCLGITEEGIGEILKSCCEIKCLEIKRCRAVFDLG-IDLELPKLEVLQASGSALNDHALKMI 489 (577)
Q Consensus 427 l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~-~~~~~~~L~~L~l~~~~i~~~~~~~l 489 (577)
+++| .++... ..+++|+.|++++|. ++... ....+++|+.|++++|.++......+
T Consensus 248 Ls~N-~L~~lp-----~~~~~L~~L~Ls~N~-L~~lp~~l~~l~~L~~L~L~~N~l~~~~~~~l 304 (622)
T 3g06_A 248 VSGN-RLTSLP-----MLPSGLLSLSVYRNQ-LTRLPESLIHLSSETTVNLEGNPLSERTLQAL 304 (622)
T ss_dssp CCSS-CCSCCC-----CCCTTCCEEECCSSC-CCSCCGGGGGSCTTCEEECCSCCCCHHHHHHH
T ss_pred CCCC-CCCcCC-----cccccCcEEeCCCCC-CCcCCHHHhhccccCEEEecCCCCCCcCHHHH
Confidence 7776 343211 145677777777775 33332 23466777777777777776554443
No 63
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.47 E-value=5.5e-14 Score=143.30 Aligned_cols=238 Identities=17% Similarity=0.115 Sum_probs=133.7
Q ss_pred CCCcEEEeccCCCCCHHHHHHHHhcCCCccEEEecCCCCCCcchhHHHHhhhhcCCCEEEcCCCCCChHHHHHHHhcCCC
Q 046157 213 VLLREILIRDCDFITQSGISFAMRNSPNLVSISVNGIGIPTIDSCFKESFAYARGLCEIDLSNSFISDELLRLLGEACLP 292 (577)
Q Consensus 213 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~ 292 (577)
++|++|+++++.. +. +...+++|+.|+++++.+..+.. .+++|++|++++|.++. +...+++
T Consensus 61 ~~L~~L~L~~N~l-~~-----lp~~l~~L~~L~Ls~N~l~~lp~-------~l~~L~~L~Ls~N~l~~-----l~~~l~~ 122 (622)
T 3g06_A 61 AHITTLVIPDNNL-TS-----LPALPPELRTLEVSGNQLTSLPV-------LPPGLLELSIFSNPLTH-----LPALPSG 122 (622)
T ss_dssp TTCSEEEECSCCC-SC-----CCCCCTTCCEEEECSCCCSCCCC-------CCTTCCEEEECSCCCCC-----CCCCCTT
T ss_pred CCCcEEEecCCCC-CC-----CCCcCCCCCEEEcCCCcCCcCCC-------CCCCCCEEECcCCcCCC-----CCCCCCC
Confidence 6889999988642 21 11146788888888887654443 56788888888876654 1114667
Q ss_pred CcEEEecCCCCCCHHHHHHHHhcCCCcCeeecccccccChHHHHHHHhcCCCCCEEeecCCCCCChHHHHHHHhhCCCCC
Q 046157 293 LKKLVLSHCYNFTLAGISFLLSKYQSLEHLNLEAANFLEDESMIDLSKFLTSLNFIDLGFCAKLTNSTFFTILRECPLLS 372 (577)
Q Consensus 293 L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~ 372 (577)
|+.|+++++.... + ...+++|++|+++++. ++.. ...+++|+.|+++++. ++... ..+++|+
T Consensus 123 L~~L~L~~N~l~~---l---p~~l~~L~~L~Ls~N~-l~~l-----~~~~~~L~~L~L~~N~-l~~l~-----~~~~~L~ 184 (622)
T 3g06_A 123 LCKLWIFGNQLTS---L---PVLPPGLQELSVSDNQ-LASL-----PALPSELCKLWAYNNQ-LTSLP-----MLPSGLQ 184 (622)
T ss_dssp CCEEECCSSCCSC---C---CCCCTTCCEEECCSSC-CSCC-----CCCCTTCCEEECCSSC-CSCCC-----CCCTTCC
T ss_pred cCEEECCCCCCCc---C---CCCCCCCCEEECcCCc-CCCc-----CCccCCCCEEECCCCC-CCCCc-----ccCCCCc
Confidence 8888877764322 1 1124677777777765 3321 1134567777776643 22211 3456777
Q ss_pred eEEeeeccCCCCcccccccCCCCccEEEcCCCCCCCHHHHHHHHhhCCCccEEecCCCCCCCHHHHHHHHhhCCCCcEEE
Q 046157 373 EIKMETTNLGLDDFTTPLVINPQVKSLHLARNGNLSDESLKKLAILCPNLEVIDLSHCLGITEEGIGEILKSCCEIKCLE 452 (577)
Q Consensus 373 ~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~ 452 (577)
.|++++|.+..-. ...++|+.|++++|. ++. +...+++|+.|++++| .++... ..+++|+.|+
T Consensus 185 ~L~Ls~N~l~~l~-----~~~~~L~~L~L~~N~-l~~-----l~~~~~~L~~L~Ls~N-~L~~lp-----~~l~~L~~L~ 247 (622)
T 3g06_A 185 ELSVSDNQLASLP-----TLPSELYKLWAYNNR-LTS-----LPALPSGLKELIVSGN-RLTSLP-----VLPSELKELM 247 (622)
T ss_dssp EEECCSSCCSCCC-----CCCTTCCEEECCSSC-CSS-----CCCCCTTCCEEECCSS-CCSCCC-----CCCTTCCEEE
T ss_pred EEECCCCCCCCCC-----CccchhhEEECcCCc-ccc-----cCCCCCCCCEEEccCC-ccCcCC-----CCCCcCcEEE
Confidence 7777776654311 123567777776654 332 1123456667776665 343211 3456666666
Q ss_pred cccccccccccccccCCCceEEEccCCCCCHHHHHHHHHhCCCccEEecCCCCCCCh
Q 046157 453 IKRCRAVFDLGIDLELPKLEVLQASGSALNDHALKMIANTCSRILHLDLDNCLNVTT 509 (577)
Q Consensus 453 l~~~~~l~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~c~~l~~ 509 (577)
+++|. ++.... .+++|+.|++++|.++.. ......+++|+.|++++|+ ++.
T Consensus 248 Ls~N~-L~~lp~--~~~~L~~L~Ls~N~L~~l--p~~l~~l~~L~~L~L~~N~-l~~ 298 (622)
T 3g06_A 248 VSGNR-LTSLPM--LPSGLLSLSVYRNQLTRL--PESLIHLSSETTVNLEGNP-LSE 298 (622)
T ss_dssp CCSSC-CSCCCC--CCTTCCEEECCSSCCCSC--CGGGGGSCTTCEEECCSCC-CCH
T ss_pred CCCCC-CCcCCc--ccccCcEEeCCCCCCCcC--CHHHhhccccCEEEecCCC-CCC
Confidence 66664 333222 455666666666655521 1112245666666666654 443
No 64
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.46 E-value=6.4e-16 Score=145.36 Aligned_cols=87 Identities=21% Similarity=0.210 Sum_probs=41.0
Q ss_pred hhCCCCcEEEccccccccccc--ccccCCCceEEEccCCCCCHHHHHHHHHhCCCccEEecCCCCCCChhhHHHHHhhC-
Q 046157 443 KSCCEIKCLEIKRCRAVFDLG--IDLELPKLEVLQASGSALNDHALKMIANTCSRILHLDLDNCLNVTTSGVKEVVEHC- 519 (577)
Q Consensus 443 ~~~~~L~~L~l~~~~~l~~~~--~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~c~~l~~~~l~~~~~~~- 519 (577)
..+++|+.|++++|. ++... ....+++|++|++++|.+++.....+ ..+++|+.|++++|. ++...... +..+
T Consensus 172 ~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~-~~l~~L~~L~L~~N~-l~~~~~~~-~~~~~ 247 (306)
T 2z66_A 172 TELRNLTFLDLSQCQ-LEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPY-KCLNSLQVLDYSLNH-IMTSKKQE-LQHFP 247 (306)
T ss_dssp TTCTTCCEEECTTSC-CCEECTTTTTTCTTCCEEECTTSCCSBCCSGGG-TTCTTCCEEECTTSC-CCBCSSSS-CCCCC
T ss_pred hhCcCCCEEECCCCC-cCCcCHHHhcCCCCCCEEECCCCccCccChhhc-cCcccCCEeECCCCC-CcccCHHH-HHhhh
Confidence 344555555555554 22221 22345556666665555543221111 235666666666653 43322211 1334
Q ss_pred CCCcEEEecCCCCC
Q 046157 520 RTLREINLRWCDEV 533 (577)
Q Consensus 520 ~~L~~L~l~~c~~~ 533 (577)
++|+.|++++++-.
T Consensus 248 ~~L~~L~L~~N~~~ 261 (306)
T 2z66_A 248 SSLAFLNLTQNDFA 261 (306)
T ss_dssp TTCCEEECTTCCEE
T ss_pred ccCCEEEccCCCee
Confidence 36777777766443
No 65
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=99.46 E-value=9.9e-14 Score=114.53 Aligned_cols=106 Identities=22% Similarity=0.329 Sum_probs=85.2
Q ss_pred CCccEEecCCCCCCCHHHHHHHHhhCCCCcEEEcccccccccccccccCCCceEEEccCCCCCHHHHHHHHH---hCCCc
Q 046157 420 PNLEVIDLSHCLGITEEGIGEILKSCCEIKCLEIKRCRAVFDLGIDLELPKLEVLQASGSALNDHALKMIAN---TCSRI 496 (577)
Q Consensus 420 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~---~~~~L 496 (577)
.+|+.|++++|. +++.++..+ .+|++|+.|+|++|. .++|.++..+.. .+++|
T Consensus 61 ~~L~~LDLs~~~-Itd~GL~~L-~~~~~L~~L~L~~C~----------------------~ItD~gL~~L~~~~~~~~~L 116 (176)
T 3e4g_A 61 YKIQAIDATDSC-IMSIGFDHM-EGLQYVEKIRLCKCH----------------------YIEDGCLERLSQLENLQKSM 116 (176)
T ss_dssp CCEEEEEEESCC-CCGGGGGGG-TTCSCCCEEEEESCT----------------------TCCHHHHHHHHTCHHHHHHC
T ss_pred ceEeEEeCcCCC-ccHHHHHHh-cCCCCCCEEEeCCCC----------------------ccCHHHHHHHHhcccccCCC
Confidence 368888888874 888777764 677888888887777 478888888875 24689
Q ss_pred cEEecCCCCCCChhhHHHHHhhCCCCcEEEecCCCCCcHHH--HHHHHHhCCCCce
Q 046157 497 LHLDLDNCLNVTTSGVKEVVEHCRTLREINLRWCDEVNVDI--VAWMVFSRPSLRK 550 (577)
Q Consensus 497 ~~L~l~~c~~l~~~~l~~~~~~~~~L~~L~l~~c~~~~~~~--~~~~~~~~~~L~~ 550 (577)
++|+|++|++||+.|+..+ ..|++|++|++++|+.+++.+ ...+.++.|.++.
T Consensus 117 ~~L~Ls~C~~ITD~Gl~~L-~~~~~L~~L~L~~c~~Itd~gl~~~~L~~~lP~l~V 171 (176)
T 3e4g_A 117 LEMEIISCGNVTDKGIIAL-HHFRNLKYLFLSDLPGVKEKEKIVQAFKTSLPSLEL 171 (176)
T ss_dssp CEEEEESCTTCCHHHHHHG-GGCTTCCEEEEESCTTCCCHHHHHHHHHHHCTTCEE
T ss_pred CEEEcCCCCcCCHHHHHHH-hcCCCCCEEECCCCCCCCchHHHHHHHHHHCCCcEE
Confidence 9999999999999999887 579999999999999999764 5677788898764
No 66
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.45 E-value=8.6e-14 Score=133.61 Aligned_cols=186 Identities=16% Similarity=0.125 Sum_probs=105.5
Q ss_pred hcCCCcCeeecccccccChHHHHHHHhcCCCCCEEeecCCCCCChHHHHHHHhhCCCCCeEEeeeccCCCCcccccccCC
Q 046157 314 SKYQSLEHLNLEAANFLEDESMIDLSKFLTSLNFIDLGFCAKLTNSTFFTILRECPLLSEIKMETTNLGLDDFTTPLVIN 393 (577)
Q Consensus 314 ~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 393 (577)
..+++|++|+++++. +...........+++|++|+++++..+..... .....+++|++|++++|.+.... ...+..+
T Consensus 121 ~~l~~L~~L~L~~n~-l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~-~~~~~l~~L~~L~l~~n~l~~~~-~~~l~~l 197 (353)
T 2z80_A 121 KPLSSLTFLNLLGNP-YKTLGETSLFSHLTKLQILRVGNMDTFTKIQR-KDFAGLTFLEELEIDASDLQSYE-PKSLKSI 197 (353)
T ss_dssp TTCTTCSEEECTTCC-CSSSCSSCSCTTCTTCCEEEEEESSSCCEECT-TTTTTCCEEEEEEEEETTCCEEC-TTTTTTC
T ss_pred CCCccCCEEECCCCC-CcccCchhhhccCCCCcEEECCCCccccccCH-HHccCCCCCCEEECCCCCcCccC-HHHHhcc
Confidence 445556666665554 22111000112356777777766532222111 11235778888888887765432 4566778
Q ss_pred CCccEEEcCCCCCCCHHHHHHHHhhCCCccEEecCCCCCCCHHHHH--HHHhhCCCCcEEEccccccccccc------cc
Q 046157 394 PQVKSLHLARNGNLSDESLKKLAILCPNLEVIDLSHCLGITEEGIG--EILKSCCEIKCLEIKRCRAVFDLG------ID 465 (577)
Q Consensus 394 ~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~--~~~~~~~~L~~L~l~~~~~l~~~~------~~ 465 (577)
++|+.|+++++. +.... ......+++|+.|+++++ .++..... ......+.++.++++++. +.+.. ..
T Consensus 198 ~~L~~L~l~~n~-l~~~~-~~~~~~~~~L~~L~L~~n-~l~~~~~~~l~~~~~~~~l~~l~L~~~~-l~~~~l~~l~~~l 273 (353)
T 2z80_A 198 QNVSHLILHMKQ-HILLL-EIFVDVTSSVECLELRDT-DLDTFHFSELSTGETNSLIKKFTFRNVK-ITDESLFQVMKLL 273 (353)
T ss_dssp SEEEEEEEECSC-STTHH-HHHHHHTTTEEEEEEESC-BCTTCCCC------CCCCCCEEEEESCB-CCHHHHHHHHHHH
T ss_pred ccCCeecCCCCc-cccch-hhhhhhcccccEEECCCC-ccccccccccccccccchhhcccccccc-ccCcchhhhHHHH
Confidence 888888888876 44322 223445788888888887 34332111 113456677788777765 33322 12
Q ss_pred ccCCCceEEEccCCCCCHHHHHHHHHhCCCccEEecCCCCCC
Q 046157 466 LELPKLEVLQASGSALNDHALKMIANTCSRILHLDLDNCLNV 507 (577)
Q Consensus 466 ~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~c~~l 507 (577)
..+++|+.|++++|.++... ..+...+++|++|++++|+-.
T Consensus 274 ~~l~~L~~L~Ls~N~l~~i~-~~~~~~l~~L~~L~L~~N~~~ 314 (353)
T 2z80_A 274 NQISGLLELEFSRNQLKSVP-DGIFDRLTSLQKIWLHTNPWD 314 (353)
T ss_dssp HTCTTCCEEECCSSCCCCCC-TTTTTTCTTCCEEECCSSCBC
T ss_pred hcccCCCEEECCCCCCCccC-HHHHhcCCCCCEEEeeCCCcc
Confidence 36788888888888776322 112235788888888887633
No 67
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.44 E-value=4.4e-15 Score=140.46 Aligned_cols=222 Identities=18% Similarity=0.172 Sum_probs=101.4
Q ss_pred CCCCcEEEecCCCCCCHHHHHHHHhcCCCcCeeecccccccChHHHHHHHhcCCCCCEEeecCCCCCChHHHHHHHhhCC
Q 046157 290 CLPLKKLVLSHCYNFTLAGISFLLSKYQSLEHLNLEAANFLEDESMIDLSKFLTSLNFIDLGFCAKLTNSTFFTILRECP 369 (577)
Q Consensus 290 ~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~ 369 (577)
.++++.|++.++.... +...+..+++|++|+++++. ++. +......+++|++|+++++. ++ .+..-...++
T Consensus 80 ~~~l~~L~L~~n~l~~---lp~~l~~l~~L~~L~L~~n~-l~~--lp~~~~~l~~L~~L~Ls~n~-l~--~lp~~l~~l~ 150 (328)
T 4fcg_A 80 QPGRVALELRSVPLPQ---FPDQAFRLSHLQHMTIDAAG-LME--LPDTMQQFAGLETLTLARNP-LR--ALPASIASLN 150 (328)
T ss_dssp STTCCEEEEESSCCSS---CCSCGGGGTTCSEEEEESSC-CCC--CCSCGGGGTTCSEEEEESCC-CC--CCCGGGGGCT
T ss_pred ccceeEEEccCCCchh---cChhhhhCCCCCEEECCCCC-ccc--hhHHHhccCCCCEEECCCCc-cc--cCcHHHhcCc
Confidence 4677777777754321 11113346677777777665 221 11111235666666666643 22 1111134566
Q ss_pred CCCeEEeeeccCCCCccccc---------ccCCCCccEEEcCCCCCCCHHHHHHHHhhCCCccEEecCCCCCCCHHHHHH
Q 046157 370 LLSEIKMETTNLGLDDFTTP---------LVINPQVKSLHLARNGNLSDESLKKLAILCPNLEVIDLSHCLGITEEGIGE 440 (577)
Q Consensus 370 ~L~~L~l~~~~~~~~~~~~~---------~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~ 440 (577)
+|+.|++++|...... +.. +..+++|+.|++++|. ++. +..
T Consensus 151 ~L~~L~L~~n~~~~~~-p~~~~~~~~~~~~~~l~~L~~L~L~~n~-l~~----------------------------lp~ 200 (328)
T 4fcg_A 151 RLRELSIRACPELTEL-PEPLASTDASGEHQGLVNLQSLRLEWTG-IRS----------------------------LPA 200 (328)
T ss_dssp TCCEEEEEEETTCCCC-CSCSEEEC-CCCEEESTTCCEEEEEEEC-CCC----------------------------CCG
T ss_pred CCCEEECCCCCCcccc-ChhHhhccchhhhccCCCCCEEECcCCC-cCc----------------------------chH
Confidence 6666666665432211 111 1224555555555443 221 111
Q ss_pred HHhhCCCCcEEEcccccccccccccccCCCceEEEccCCCCCHHHHHHHHHhCCCccEEecCCCCCCChhhHHHHHhhCC
Q 046157 441 ILKSCCEIKCLEIKRCRAVFDLGIDLELPKLEVLQASGSALNDHALKMIANTCSRILHLDLDNCLNVTTSGVKEVVEHCR 520 (577)
Q Consensus 441 ~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~c~~l~~~~l~~~~~~~~ 520 (577)
.+..+++|+.|++++|..-.-......+++|++|++++|.+.......+ ..+++|+.|++++|..+.... ..+..++
T Consensus 201 ~l~~l~~L~~L~L~~N~l~~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~-~~l~~L~~L~L~~n~~~~~~p--~~~~~l~ 277 (328)
T 4fcg_A 201 SIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIF-GGRAPLKRLILKDCSNLLTLP--LDIHRLT 277 (328)
T ss_dssp GGGGCTTCCEEEEESSCCCCCCGGGGGCTTCCEEECTTCTTCCBCCCCT-TCCCCCCEEECTTCTTCCBCC--TTGGGCT
T ss_pred hhcCCCCCCEEEccCCCCCcCchhhccCCCCCEEECcCCcchhhhHHHh-cCCCCCCEEECCCCCchhhcc--hhhhcCC
Confidence 1334444444444444411111122234455555555443332111111 134566666666654433211 1135566
Q ss_pred CCcEEEecCCCCCcHHHHHHHHHhCCCCceeccCC
Q 046157 521 TLREINLRWCDEVNVDIVAWMVFSRPSLRKIIPPC 555 (577)
Q Consensus 521 ~L~~L~l~~c~~~~~~~~~~~~~~~~~L~~l~~~~ 555 (577)
+|+.|++++|+.... +.....++++|+.+.++.
T Consensus 278 ~L~~L~L~~n~~~~~--iP~~l~~L~~L~~l~l~~ 310 (328)
T 4fcg_A 278 QLEKLDLRGCVNLSR--LPSLIAQLPANCIILVPP 310 (328)
T ss_dssp TCCEEECTTCTTCCC--CCGGGGGSCTTCEEECCG
T ss_pred CCCEEeCCCCCchhh--ccHHHhhccCceEEeCCH
Confidence 666666666654431 223344566666666653
No 68
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.42 E-value=9.9e-16 Score=144.08 Aligned_cols=35 Identities=14% Similarity=0.169 Sum_probs=17.1
Q ss_pred CCccEEEecCCCCCCcchhHHHHhhhhcCCCEEEcC
Q 046157 239 PNLVSISVNGIGIPTIDSCFKESFAYARGLCEIDLS 274 (577)
Q Consensus 239 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~ 274 (577)
.+++.|++.++.+... ..++..+..+++|++|+++
T Consensus 50 ~~l~~L~L~~~~l~~~-~~~~~~l~~l~~L~~L~L~ 84 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKP-YPIPSSLANLPYLNFLYIG 84 (313)
T ss_dssp CCEEEEEEECCCCSSC-EECCGGGGGCTTCSEEEEE
T ss_pred ceEEEEECCCCCccCC-cccChhHhCCCCCCeeeCC
Confidence 4566666666554210 0223344555555555555
No 69
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.42 E-value=2.6e-13 Score=127.48 Aligned_cols=154 Identities=14% Similarity=0.123 Sum_probs=105.4
Q ss_pred hCCCCCeEEeeeccCCCCcccccccCCCCccEEEcCCCCCCCHHHHHHH--HhhCCCccEEecCCCCCCCH--HHHHHHH
Q 046157 367 ECPLLSEIKMETTNLGLDDFTTPLVINPQVKSLHLARNGNLSDESLKKL--AILCPNLEVIDLSHCLGITE--EGIGEIL 442 (577)
Q Consensus 367 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~l~~l--~~~~~~L~~L~l~~~~~~~~--~~~~~~~ 442 (577)
.+++|++|++++|.+.... ...+..+++|++|++++|....+..+... ...+++|++|++++| .++. .....++
T Consensus 143 ~~~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~~~l~ 220 (310)
T 4glp_A 143 LKPGLKVLSIAQAHSPAFS-CEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNT-GMETPTGVCAALA 220 (310)
T ss_dssp BCSCCCEEEEECCSSCCCC-TTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSS-CCCCHHHHHHHHH
T ss_pred hccCCCEEEeeCCCcchhh-HHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCC-CCCchHHHHHHHH
Confidence 5788888888888774433 45677899999999999874433333211 146789999999998 5652 2223346
Q ss_pred hhCCCCcEEEcccccccccc-c-ccc---cCCCceEEEccCCCCCHHHHHHHHHhCCCccEEecCCCCCCChhhHHHHHh
Q 046157 443 KSCCEIKCLEIKRCRAVFDL-G-IDL---ELPKLEVLQASGSALNDHALKMIANTCSRILHLDLDNCLNVTTSGVKEVVE 517 (577)
Q Consensus 443 ~~~~~L~~L~l~~~~~l~~~-~-~~~---~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~c~~l~~~~l~~~~~ 517 (577)
..+++|+.|++++|. ++.. . ... .+++|++|++++|.++... .. .+++|+.|++++|. ++.... ..
T Consensus 221 ~~l~~L~~L~Ls~N~-l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~lp-~~---~~~~L~~L~Ls~N~-l~~~~~---~~ 291 (310)
T 4glp_A 221 AAGVQPHSLDLSHNS-LRATVNPSAPRCMWSSALNSLNLSFAGLEQVP-KG---LPAKLRVLDLSSNR-LNRAPQ---PD 291 (310)
T ss_dssp HHTCCCSSEECTTSC-CCCCCCSCCSSCCCCTTCCCEECCSSCCCSCC-SC---CCSCCSCEECCSCC-CCSCCC---TT
T ss_pred hcCCCCCEEECCCCC-CCccchhhHHhccCcCcCCEEECCCCCCCchh-hh---hcCCCCEEECCCCc-CCCCch---hh
Confidence 788999999999998 4433 1 122 2479999999999887321 11 13688999998864 654221 35
Q ss_pred hCCCCcEEEecCCC
Q 046157 518 HCRTLREINLRWCD 531 (577)
Q Consensus 518 ~~~~L~~L~l~~c~ 531 (577)
.+++|+.|++++++
T Consensus 292 ~l~~L~~L~L~~N~ 305 (310)
T 4glp_A 292 ELPEVDNLTLDGNP 305 (310)
T ss_dssp SCCCCSCEECSSTT
T ss_pred hCCCccEEECcCCC
Confidence 67888888888764
No 70
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.42 E-value=3.3e-15 Score=140.51 Aligned_cols=87 Identities=16% Similarity=0.216 Sum_probs=41.0
Q ss_pred ccCcEEeccCCcccCh-hHHHHHHhcCCCCcEEEeccCCCCCHHHHHHHHhcCCCccEEEecCCCCCCcchhHHHHhhhh
Q 046157 187 KRLKRINLSGNFFITD-KSLMFLSSNLVLLREILIRDCDFITQSGISFAMRNSPNLVSISVNGIGIPTIDSCFKESFAYA 265 (577)
Q Consensus 187 ~~L~~L~l~~~~~~~~-~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 265 (577)
.+++.|+++++. ++. ..+......+++|++|+++++..+... ++..+..+++|++|++.++.+. ...+..+..+
T Consensus 50 ~~l~~L~L~~~~-l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~-~p~~l~~l~~L~~L~Ls~n~l~---~~~p~~~~~l 124 (313)
T 1ogq_A 50 YRVNNLDLSGLN-LPKPYPIPSSLANLPYLNFLYIGGINNLVGP-IPPAIAKLTQLHYLYITHTNVS---GAIPDFLSQI 124 (313)
T ss_dssp CCEEEEEEECCC-CSSCEECCGGGGGCTTCSEEEEEEETTEESC-CCGGGGGCTTCSEEEEEEECCE---EECCGGGGGC
T ss_pred ceEEEEECCCCC-ccCCcccChhHhCCCCCCeeeCCCCCccccc-CChhHhcCCCCCEEECcCCeeC---CcCCHHHhCC
Confidence 467777777642 221 011122344667777777631111110 1122345566666666655432 1223334555
Q ss_pred cCCCEEEcCCCCC
Q 046157 266 RGLCEIDLSNSFI 278 (577)
Q Consensus 266 ~~L~~L~l~~~~~ 278 (577)
++|++|+++++.+
T Consensus 125 ~~L~~L~Ls~N~l 137 (313)
T 1ogq_A 125 KTLVTLDFSYNAL 137 (313)
T ss_dssp TTCCEEECCSSEE
T ss_pred CCCCEEeCCCCcc
Confidence 5566666555543
No 71
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.41 E-value=2.2e-14 Score=143.32 Aligned_cols=171 Identities=13% Similarity=0.143 Sum_probs=97.8
Q ss_pred CCCCeEEeeeccCCCCcccccccCCCCccEEEcCCCCCCCHHHHHHHHhhCCCccEEecCCCCCCCHHHHHHHHhhCCCC
Q 046157 369 PLLSEIKMETTNLGLDDFTTPLVINPQVKSLHLARNGNLSDESLKKLAILCPNLEVIDLSHCLGITEEGIGEILKSCCEI 448 (577)
Q Consensus 369 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L 448 (577)
++|+.|++++|.+.... ...+++|+.|++++|. ++......+ ..+++|+.|++++| .++......+...+++|
T Consensus 99 ~~L~~L~L~~N~l~~~~----~~~l~~L~~L~L~~N~-l~~~~~~~~-~~l~~L~~L~Ls~N-~l~~~~~~~l~~~l~~L 171 (487)
T 3oja_A 99 PSIETLHAANNNISRVS----CSRGQGKKNIYLANNK-ITMLRDLDE-GCRSRVQYLDLKLN-EIDTVNFAELAASSDTL 171 (487)
T ss_dssp TTCCEEECCSSCCCCEE----ECCCSSCEEEECCSSC-CCSGGGBCG-GGGSSEEEEECTTS-CCCEEEGGGGGGGTTTC
T ss_pred CCcCEEECcCCcCCCCC----ccccCCCCEEECCCCC-CCCCCchhh-cCCCCCCEEECCCC-CCCCcChHHHhhhCCcc
Confidence 55555665555543322 1234566777776655 333211111 23567777777776 45543333334466777
Q ss_pred cEEEcccccccccccccccCCCceEEEccCCCCCHHHHHHHHHhCCCccEEecCCCCCCChhhHHHHHhhCCCCcEEEec
Q 046157 449 KCLEIKRCRAVFDLGIDLELPKLEVLQASGSALNDHALKMIANTCSRILHLDLDNCLNVTTSGVKEVVEHCRTLREINLR 528 (577)
Q Consensus 449 ~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~c~~l~~~~l~~~~~~~~~L~~L~l~ 528 (577)
+.|++++|. ++.......+++|+.|++++|.++..... ...+++|+.|++++|. ++. +...+..+++|+.|+++
T Consensus 172 ~~L~Ls~N~-l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~--~~~l~~L~~L~Ls~N~-l~~--lp~~l~~l~~L~~L~l~ 245 (487)
T 3oja_A 172 EHLNLQYNF-IYDVKGQVVFAKLKTLDLSSNKLAFMGPE--FQSAAGVTWISLRNNK-LVL--IEKALRFSQNLEHFDLR 245 (487)
T ss_dssp CEEECTTSC-CCEEECCCCCTTCCEEECCSSCCCEECGG--GGGGTTCSEEECTTSC-CCE--ECTTCCCCTTCCEEECT
T ss_pred cEEecCCCc-cccccccccCCCCCEEECCCCCCCCCCHh--HcCCCCccEEEecCCc-Ccc--cchhhccCCCCCEEEcC
Confidence 777777776 44444334577888888888777643221 2346788888888764 553 22224567788888888
Q ss_pred CCCCCcHHHHHHHHHhCCCCceecc
Q 046157 529 WCDEVNVDIVAWMVFSRPSLRKIIP 553 (577)
Q Consensus 529 ~c~~~~~~~~~~~~~~~~~L~~l~~ 553 (577)
+++... ..+......++.|+.+.+
T Consensus 246 ~N~l~c-~~~~~~~~~l~~L~~l~~ 269 (487)
T 3oja_A 246 GNGFHC-GTLRDFFSKNQRVQTVAK 269 (487)
T ss_dssp TCCBCH-HHHHHHHTTCHHHHHHHH
T ss_pred CCCCcC-cchHHHHHhCCCCcEEec
Confidence 875442 334445556666666655
No 72
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.41 E-value=4.8e-14 Score=140.23 Aligned_cols=228 Identities=17% Similarity=0.084 Sum_probs=155.6
Q ss_pred CCCCcEEEecCCCCCCHHHHHHHHhcCCCcCeeecccccccChHHHHHHHhcCCCCCEEeecCCCCCChHHHHHHHhhCC
Q 046157 290 CLPLKKLVLSHCYNFTLAGISFLLSKYQSLEHLNLEAANFLEDESMIDLSKFLTSLNFIDLGFCAKLTNSTFFTILRECP 369 (577)
Q Consensus 290 ~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~ 369 (577)
.++++.|+++++.... .. ...+..+++|+.|+++++. ++......+ ..+++|++|+++++. ++... ......++
T Consensus 74 ~~~l~~L~L~~n~i~~-~~-~~~~~~l~~L~~L~Ls~n~-i~~~~~~~~-~~l~~L~~L~L~~n~-l~~~~-~~~~~~l~ 147 (452)
T 3zyi_A 74 PSNTRYLNLMENNIQM-IQ-ADTFRHLHHLEVLQLGRNS-IRQIEVGAF-NGLASLNTLELFDNW-LTVIP-SGAFEYLS 147 (452)
T ss_dssp CTTCSEEECCSSCCCE-EC-TTTTTTCTTCCEEECCSSC-CCEECTTTT-TTCTTCCEEECCSSC-CSBCC-TTTSSSCT
T ss_pred CCCccEEECcCCcCce-EC-HHHcCCCCCCCEEECCCCc-cCCcChhhc-cCcccCCEEECCCCc-CCccC-hhhhcccC
Confidence 3689999999875322 10 1124568999999999987 443322222 347899999998865 32211 11134688
Q ss_pred CCCeEEeeeccCCCCcccccccCCCCccEEEcCCCCCCCHHHHHHHHhhCCCccEEecCCCCCCCHHHHHHHHhhCCCCc
Q 046157 370 LLSEIKMETTNLGLDDFTTPLVINPQVKSLHLARNGNLSDESLKKLAILCPNLEVIDLSHCLGITEEGIGEILKSCCEIK 449 (577)
Q Consensus 370 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~ 449 (577)
+|++|++++|.+.... ...+..+++|+.|+++++..+...... ....+++|+.|++++| .++.. . .+..+++|+
T Consensus 148 ~L~~L~L~~N~l~~~~-~~~~~~l~~L~~L~l~~~~~l~~i~~~-~~~~l~~L~~L~L~~n-~l~~~--~-~~~~l~~L~ 221 (452)
T 3zyi_A 148 KLRELWLRNNPIESIP-SYAFNRVPSLMRLDLGELKKLEYISEG-AFEGLFNLKYLNLGMC-NIKDM--P-NLTPLVGLE 221 (452)
T ss_dssp TCCEEECCSCCCCEEC-TTTTTTCTTCCEEECCCCTTCCEECTT-TTTTCTTCCEEECTTS-CCSSC--C-CCTTCTTCC
T ss_pred CCCEEECCCCCcceeC-HhHHhcCCcccEEeCCCCCCccccChh-hccCCCCCCEEECCCC-ccccc--c-ccccccccc
Confidence 9999999999876433 446788999999999987656543222 2235789999999988 45432 1 256788999
Q ss_pred EEEccccccccccc--ccccCCCceEEEccCCCCCHHHHHHHHHhCCCccEEecCCCCCCChhhHHHHHhhCCCCcEEEe
Q 046157 450 CLEIKRCRAVFDLG--IDLELPKLEVLQASGSALNDHALKMIANTCSRILHLDLDNCLNVTTSGVKEVVEHCRTLREINL 527 (577)
Q Consensus 450 ~L~l~~~~~l~~~~--~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~c~~l~~~~l~~~~~~~~~L~~L~l 527 (577)
.|++++|. ++... ....+++|+.|++++|.++......+ ..+++|+.|++++| .++.... ..+..+++|+.|++
T Consensus 222 ~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~-~~l~~L~~L~L~~N-~l~~~~~-~~~~~l~~L~~L~L 297 (452)
T 3zyi_A 222 ELEMSGNH-FPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAF-DGLASLVELNLAHN-NLSSLPH-DLFTPLRYLVELHL 297 (452)
T ss_dssp EEECTTSC-CSEECGGGGTTCTTCCEEECTTSCCCEECTTTT-TTCTTCCEEECCSS-CCSCCCT-TSSTTCTTCCEEEC
T ss_pred EEECcCCc-CcccCcccccCccCCCEEEeCCCcCceECHHHh-cCCCCCCEEECCCC-cCCccCh-HHhccccCCCEEEc
Confidence 99999987 44332 34578999999999998875433332 35789999999987 4654322 23467899999999
Q ss_pred cCCCCC
Q 046157 528 RWCDEV 533 (577)
Q Consensus 528 ~~c~~~ 533 (577)
+++|..
T Consensus 298 ~~Np~~ 303 (452)
T 3zyi_A 298 HHNPWN 303 (452)
T ss_dssp CSSCEE
T ss_pred cCCCcC
Confidence 997644
No 73
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.41 E-value=2.6e-14 Score=135.11 Aligned_cols=58 Identities=19% Similarity=0.167 Sum_probs=24.0
Q ss_pred hCCCCcEEEccccccccccc-ccccCCCceEEEccCCCCCHHHHHHHHHhCCCccEEecC
Q 046157 444 SCCEIKCLEIKRCRAVFDLG-IDLELPKLEVLQASGSALNDHALKMIANTCSRILHLDLD 502 (577)
Q Consensus 444 ~~~~L~~L~l~~~~~l~~~~-~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~ 502 (577)
.+++|+.|++++|....... ....+++|+.|++++|.+.......+ ..+++|+.+.+.
T Consensus 251 ~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l-~~L~~L~~l~l~ 309 (328)
T 4fcg_A 251 GRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLI-AQLPANCIILVP 309 (328)
T ss_dssp CCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGG-GGSCTTCEEECC
T ss_pred CCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHH-hhccCceEEeCC
Confidence 34445555554444333322 12244455555555543332211111 134555555554
No 74
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.41 E-value=9.6e-13 Score=123.26 Aligned_cols=146 Identities=19% Similarity=0.222 Sum_probs=72.8
Q ss_pred hCCCCCeEEeeeccCCCCcccccccCCCCccEEEcCCCCCCCHHHHHHHHhhCCCccEEecCCCCCCCHHHHHHHHhhCC
Q 046157 367 ECPLLSEIKMETTNLGLDDFTTPLVINPQVKSLHLARNGNLSDESLKKLAILCPNLEVIDLSHCLGITEEGIGEILKSCC 446 (577)
Q Consensus 367 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 446 (577)
.+++|+.|++++|.+... ..+..+++|+.|++++|. +++. .. ...+++|+.|++++| .++.... +..++
T Consensus 83 ~l~~L~~L~L~~n~l~~~---~~~~~l~~L~~L~l~~n~-l~~~--~~-l~~l~~L~~L~l~~n-~l~~~~~---l~~l~ 151 (308)
T 1h6u_A 83 NLTKITELELSGNPLKNV---SAIAGLQSIKTLDLTSTQ-ITDV--TP-LAGLSNLQVLYLDLN-QITNISP---LAGLT 151 (308)
T ss_dssp TCCSCCEEECCSCCCSCC---GGGTTCTTCCEEECTTSC-CCCC--GG-GTTCTTCCEEECCSS-CCCCCGG---GGGCT
T ss_pred cCCCCCEEEccCCcCCCc---hhhcCCCCCCEEECCCCC-CCCc--hh-hcCCCCCCEEECCCC-ccCcCcc---ccCCC
Confidence 445555555555544321 234455555555555544 3221 11 234556666666555 2332111 44556
Q ss_pred CCcEEEcccccccccccccccCCCceEEEccCCCCCHHHHHHHHHhCCCccEEecCCCCCCChhhHHHHHhhCCCCcEEE
Q 046157 447 EIKCLEIKRCRAVFDLGIDLELPKLEVLQASGSALNDHALKMIANTCSRILHLDLDNCLNVTTSGVKEVVEHCRTLREIN 526 (577)
Q Consensus 447 ~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~c~~l~~~~l~~~~~~~~~L~~L~ 526 (577)
+|+.|++++|. ++.......+++|+.|++++|.+++... ...+++|++|++++|. ++... . +..+++|+.|+
T Consensus 152 ~L~~L~l~~n~-l~~~~~l~~l~~L~~L~l~~n~l~~~~~---l~~l~~L~~L~L~~N~-l~~~~--~-l~~l~~L~~L~ 223 (308)
T 1h6u_A 152 NLQYLSIGNAQ-VSDLTPLANLSKLTTLKADDNKISDISP---LASLPNLIEVHLKNNQ-ISDVS--P-LANTSNLFIVT 223 (308)
T ss_dssp TCCEEECCSSC-CCCCGGGTTCTTCCEEECCSSCCCCCGG---GGGCTTCCEEECTTSC-CCBCG--G-GTTCTTCCEEE
T ss_pred CccEEEccCCc-CCCChhhcCCCCCCEEECCCCccCcChh---hcCCCCCCEEEccCCc-cCccc--c-ccCCCCCCEEE
Confidence 66666666654 3333334455666666666665554221 2345666666666653 44322 1 35566666666
Q ss_pred ecCCC
Q 046157 527 LRWCD 531 (577)
Q Consensus 527 l~~c~ 531 (577)
+++++
T Consensus 224 l~~N~ 228 (308)
T 1h6u_A 224 LTNQT 228 (308)
T ss_dssp EEEEE
T ss_pred ccCCe
Confidence 66653
No 75
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.40 E-value=4.6e-14 Score=139.77 Aligned_cols=229 Identities=16% Similarity=0.103 Sum_probs=157.7
Q ss_pred CCCCcEEEecCCCCCCHHHHHHHHhcCCCcCeeecccccccChHHHHHHHhcCCCCCEEeecCCCCCChHHHHHHHhhCC
Q 046157 290 CLPLKKLVLSHCYNFTLAGISFLLSKYQSLEHLNLEAANFLEDESMIDLSKFLTSLNFIDLGFCAKLTNSTFFTILRECP 369 (577)
Q Consensus 290 ~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~ 369 (577)
.++++.|+++++.... ... ..+..+++|+.|+++++. ++......+ ..+++|++|+++++. ++...- .....++
T Consensus 63 ~~~l~~L~L~~n~i~~-~~~-~~~~~l~~L~~L~Ls~n~-i~~i~~~~~-~~l~~L~~L~L~~n~-l~~~~~-~~~~~l~ 136 (440)
T 3zyj_A 63 STNTRLLNLHENQIQI-IKV-NSFKHLRHLEILQLSRNH-IRTIEIGAF-NGLANLNTLELFDNR-LTTIPN-GAFVYLS 136 (440)
T ss_dssp CTTCSEEECCSCCCCE-ECT-TTTSSCSSCCEEECCSSC-CCEECGGGG-TTCSSCCEEECCSSC-CSSCCT-TTSCSCS
T ss_pred CCCCcEEEccCCcCCe-eCH-HHhhCCCCCCEEECCCCc-CCccChhhc-cCCccCCEEECCCCc-CCeeCH-hHhhccc
Confidence 3689999999875322 111 124578999999999987 443322222 347899999999864 322110 1234688
Q ss_pred CCCeEEeeeccCCCCcccccccCCCCccEEEcCCCCCCCHHHHHHHHhhCCCccEEecCCCCCCCHHHHHHHHhhCCCCc
Q 046157 370 LLSEIKMETTNLGLDDFTTPLVINPQVKSLHLARNGNLSDESLKKLAILCPNLEVIDLSHCLGITEEGIGEILKSCCEIK 449 (577)
Q Consensus 370 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~ 449 (577)
+|++|++++|.+.... ...+..+++|+.|+++++..+...... ....+++|+.|++++| .++... . +..+++|+
T Consensus 137 ~L~~L~L~~N~i~~~~-~~~~~~l~~L~~L~l~~~~~l~~i~~~-~~~~l~~L~~L~L~~n-~l~~~~--~-~~~l~~L~ 210 (440)
T 3zyj_A 137 KLKELWLRNNPIESIP-SYAFNRIPSLRRLDLGELKRLSYISEG-AFEGLSNLRYLNLAMC-NLREIP--N-LTPLIKLD 210 (440)
T ss_dssp SCCEEECCSCCCCEEC-TTTTTTCTTCCEEECCCCTTCCEECTT-TTTTCSSCCEEECTTS-CCSSCC--C-CTTCSSCC
T ss_pred cCceeeCCCCcccccC-HHHhhhCcccCEeCCCCCCCcceeCcc-hhhcccccCeecCCCC-cCcccc--c-cCCCcccC
Confidence 9999999999876433 446788999999999987655543221 2235789999999998 454321 1 56788999
Q ss_pred EEEccccccccccc--ccccCCCceEEEccCCCCCHHHHHHHHHhCCCccEEecCCCCCCChhhHHHHHhhCCCCcEEEe
Q 046157 450 CLEIKRCRAVFDLG--IDLELPKLEVLQASGSALNDHALKMIANTCSRILHLDLDNCLNVTTSGVKEVVEHCRTLREINL 527 (577)
Q Consensus 450 ~L~l~~~~~l~~~~--~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~c~~l~~~~l~~~~~~~~~L~~L~l 527 (577)
.|++++|. ++... ....+++|+.|++++|.++......+ ..+++|+.|++++| .++.... ..+..+++|+.|++
T Consensus 211 ~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~-~~l~~L~~L~L~~N-~l~~~~~-~~~~~l~~L~~L~L 286 (440)
T 3zyj_A 211 ELDLSGNH-LSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAF-DNLQSLVEINLAHN-NLTLLPH-DLFTPLHHLERIHL 286 (440)
T ss_dssp EEECTTSC-CCEECTTTTTTCTTCCEEECTTCCCCEECTTSS-TTCTTCCEEECTTS-CCCCCCT-TTTSSCTTCCEEEC
T ss_pred EEECCCCc-cCccChhhhccCccCCEEECCCCceeEEChhhh-cCCCCCCEEECCCC-CCCccCh-hHhccccCCCEEEc
Confidence 99999996 54442 34578999999999998876433322 25789999999997 4664332 23467899999999
Q ss_pred cCCCCCc
Q 046157 528 RWCDEVN 534 (577)
Q Consensus 528 ~~c~~~~ 534 (577)
+++|..-
T Consensus 287 ~~Np~~C 293 (440)
T 3zyj_A 287 HHNPWNC 293 (440)
T ss_dssp CSSCEEC
T ss_pred CCCCccC
Confidence 9976543
No 76
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.38 E-value=6.3e-14 Score=131.73 Aligned_cols=136 Identities=18% Similarity=0.188 Sum_probs=59.6
Q ss_pred cCCCcCeeecccccccChHHHHHHHhcCCCCCEEeecCCCCCChHHHHHHHhhCCCCCeEEeeeccCCCCcccccccCCC
Q 046157 315 KYQSLEHLNLEAANFLEDESMIDLSKFLTSLNFIDLGFCAKLTNSTFFTILRECPLLSEIKMETTNLGLDDFTTPLVINP 394 (577)
Q Consensus 315 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 394 (577)
.+++|++|+++++. ++..........+++|++|+++++. +... .......+++|++|++.+|.+.....+..+..++
T Consensus 99 ~l~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~l~~n~-l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~ 175 (306)
T 2z66_A 99 GLEQLEHLDFQHSN-LKQMSEFSVFLSLRNLIYLDISHTH-TRVA-FNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELR 175 (306)
T ss_dssp TCTTCCEEECTTSE-EESSTTTTTTTTCTTCCEEECTTSC-CEEC-STTTTTTCTTCCEEECTTCEEGGGEECSCCTTCT
T ss_pred CCCCCCEEECCCCc-ccccccchhhhhccCCCEEECCCCc-CCcc-chhhcccCcCCCEEECCCCccccccchhHHhhCc
Confidence 35566666666554 2211110111234566666665543 1110 0011224556666666665544322234455556
Q ss_pred CccEEEcCCCCCCCHHHHHHHHhhCCCccEEecCCCCCCCHHHHHHHHhhCCCCcEEEccccc
Q 046157 395 QVKSLHLARNGNLSDESLKKLAILCPNLEVIDLSHCLGITEEGIGEILKSCCEIKCLEIKRCR 457 (577)
Q Consensus 395 ~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 457 (577)
+|+.|++++|. ++...... ...+++|+.|+++++ .++..... .+..+++|+.|++++|.
T Consensus 176 ~L~~L~Ls~n~-l~~~~~~~-~~~l~~L~~L~L~~N-~l~~~~~~-~~~~l~~L~~L~L~~N~ 234 (306)
T 2z66_A 176 NLTFLDLSQCQ-LEQLSPTA-FNSLSSLQVLNMSHN-NFFSLDTF-PYKCLNSLQVLDYSLNH 234 (306)
T ss_dssp TCCEEECTTSC-CCEECTTT-TTTCTTCCEEECTTS-CCSBCCSG-GGTTCTTCCEEECTTSC
T ss_pred CCCEEECCCCC-cCCcCHHH-hcCCCCCCEEECCCC-ccCccChh-hccCcccCCEeECCCCC
Confidence 66666666554 33211111 123455566666554 22221110 13345555555555554
No 77
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.36 E-value=2.2e-14 Score=134.99 Aligned_cols=133 Identities=18% Similarity=0.189 Sum_probs=75.2
Q ss_pred cCCCcCeeecccccccChHHHHHHH--hcCCCCCEEeecCCCCCCh--HHHHHHHhhCCCCCeEEeeeccCCCCcccccc
Q 046157 315 KYQSLEHLNLEAANFLEDESMIDLS--KFLTSLNFIDLGFCAKLTN--STFFTILRECPLLSEIKMETTNLGLDDFTTPL 390 (577)
Q Consensus 315 ~~~~L~~L~l~~~~~~~~~~~~~l~--~~~~~L~~L~l~~~~~~~~--~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~ 390 (577)
.+++|++|+++++..........-. ..+++|++|+++++. ++. .....+...+++|+.|++++|.+........+
T Consensus 171 ~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~ 249 (312)
T 1wwl_A 171 VFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAG-METPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSC 249 (312)
T ss_dssp CCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSC-CCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCC
T ss_pred cCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCc-CcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhh
Confidence 4556666666665522111111111 345667777776653 331 22233445667777777777766554322344
Q ss_pred cCCCCccEEEcCCCCCCCHHHHHHHHhhCCCccEEecCCCCCCCHHHHHHHHhhCCCCcEEEccccc
Q 046157 391 VINPQVKSLHLARNGNLSDESLKKLAILCPNLEVIDLSHCLGITEEGIGEILKSCCEIKCLEIKRCR 457 (577)
Q Consensus 391 ~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 457 (577)
..+++|+.|++++|. ++. +.. ...++|++|+++++ .++.. .. +..+++|+.|++++|+
T Consensus 250 ~~l~~L~~L~Ls~N~-l~~--ip~--~~~~~L~~L~Ls~N-~l~~~--p~-~~~l~~L~~L~L~~N~ 307 (312)
T 1wwl_A 250 DWPSQLNSLNLSFTG-LKQ--VPK--GLPAKLSVLDLSYN-RLDRN--PS-PDELPQVGNLSLKGNP 307 (312)
T ss_dssp CCCTTCCEEECTTSC-CSS--CCS--SCCSEEEEEECCSS-CCCSC--CC-TTTSCEEEEEECTTCT
T ss_pred hhcCCCCEEECCCCc-cCh--hhh--hccCCceEEECCCC-CCCCC--hh-HhhCCCCCEEeccCCC
Confidence 556788888888765 431 100 11267888888887 45443 12 5677888888888876
No 78
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.36 E-value=9.9e-14 Score=137.92 Aligned_cols=156 Identities=14% Similarity=0.044 Sum_probs=84.9
Q ss_pred cCCCcCeeecccccccChHHHHHHHhcCCCCCEEeecCCCCCChHHHHHHHhhCCCCCeEEeeeccCCCCcccccccCCC
Q 046157 315 KYQSLEHLNLEAANFLEDESMIDLSKFLTSLNFIDLGFCAKLTNSTFFTILRECPLLSEIKMETTNLGLDDFTTPLVINP 394 (577)
Q Consensus 315 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 394 (577)
.+++|++|+++++. ++..... ....+++|+.|+++++..+..... .....+++|+.|++++|.+.. ...+..++
T Consensus 145 ~l~~L~~L~L~~N~-l~~~~~~-~~~~l~~L~~L~l~~~~~l~~i~~-~~~~~l~~L~~L~L~~n~l~~---~~~~~~l~ 218 (452)
T 3zyi_A 145 YLSKLRELWLRNNP-IESIPSY-AFNRVPSLMRLDLGELKKLEYISE-GAFEGLFNLKYLNLGMCNIKD---MPNLTPLV 218 (452)
T ss_dssp SCTTCCEEECCSCC-CCEECTT-TTTTCTTCCEEECCCCTTCCEECT-TTTTTCTTCCEEECTTSCCSS---CCCCTTCT
T ss_pred ccCCCCEEECCCCC-cceeCHh-HHhcCCcccEEeCCCCCCccccCh-hhccCCCCCCEEECCCCcccc---cccccccc
Confidence 34555555555554 2211111 112356666666665543322111 012356777777777776543 23466677
Q ss_pred CccEEEcCCCCCCCHHHHHHHHhhCCCccEEecCCCCCCCHHHHHHHHhhCCCCcEEEccccccccccc--ccccCCCce
Q 046157 395 QVKSLHLARNGNLSDESLKKLAILCPNLEVIDLSHCLGITEEGIGEILKSCCEIKCLEIKRCRAVFDLG--IDLELPKLE 472 (577)
Q Consensus 395 ~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~--~~~~~~~L~ 472 (577)
+|+.|++++|. ++..... ....+++|+.|+++++ .++.... ..+..+++|+.|++++|. ++... ....+++|+
T Consensus 219 ~L~~L~Ls~N~-l~~~~~~-~~~~l~~L~~L~L~~n-~l~~~~~-~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~ 293 (452)
T 3zyi_A 219 GLEELEMSGNH-FPEIRPG-SFHGLSSLKKLWVMNS-QVSLIER-NAFDGLASLVELNLAHNN-LSSLPHDLFTPLRYLV 293 (452)
T ss_dssp TCCEEECTTSC-CSEECGG-GGTTCTTCCEEECTTS-CCCEECT-TTTTTCTTCCEEECCSSC-CSCCCTTSSTTCTTCC
T ss_pred cccEEECcCCc-CcccCcc-cccCccCCCEEEeCCC-cCceECH-HHhcCCCCCCEEECCCCc-CCccChHHhccccCCC
Confidence 77777777765 4332111 1234677778877776 3443221 224567778888887775 44333 234567777
Q ss_pred EEEccCCCC
Q 046157 473 VLQASGSAL 481 (577)
Q Consensus 473 ~L~l~~~~i 481 (577)
.|++++|.+
T Consensus 294 ~L~L~~Np~ 302 (452)
T 3zyi_A 294 ELHLHHNPW 302 (452)
T ss_dssp EEECCSSCE
T ss_pred EEEccCCCc
Confidence 888777643
No 79
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.36 E-value=3e-12 Score=119.90 Aligned_cols=144 Identities=21% Similarity=0.259 Sum_probs=68.5
Q ss_pred CCCccEEEecCCCCCCcchhHHHHhhhhcCCCEEEcCCCCCChHHHHHHHhcCCCCcEEEecCCCCCCHHHHHHHHhcCC
Q 046157 238 SPNLVSISVNGIGIPTIDSCFKESFAYARGLCEIDLSNSFISDELLRLLGEACLPLKKLVLSHCYNFTLAGISFLLSKYQ 317 (577)
Q Consensus 238 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~ 317 (577)
+++|++|++.++.+..+. .+..+++|++|+++++.+.+... ...+++|+.|+++++...... .+..++
T Consensus 40 l~~L~~L~l~~~~i~~l~-----~~~~l~~L~~L~L~~n~i~~~~~---~~~l~~L~~L~L~~n~l~~~~----~~~~l~ 107 (308)
T 1h6u_A 40 LDGITTLSAFGTGVTTIE-----GVQYLNNLIGLELKDNQITDLAP---LKNLTKITELELSGNPLKNVS----AIAGLQ 107 (308)
T ss_dssp HHTCCEEECTTSCCCCCT-----TGGGCTTCCEEECCSSCCCCCGG---GTTCCSCCEEECCSCCCSCCG----GGTTCT
T ss_pred cCCcCEEEeeCCCccCch-----hhhccCCCCEEEccCCcCCCChh---HccCCCCCEEEccCCcCCCch----hhcCCC
Confidence 567777777776654332 35566777777777766554221 333566666666665432211 133455
Q ss_pred CcCeeecccccccChHHHHHHHhcCCCCCEEeecCCCCCChHHHHHHHhhCCCCCeEEeeeccCCCCcccccccCCCCcc
Q 046157 318 SLEHLNLEAANFLEDESMIDLSKFLTSLNFIDLGFCAKLTNSTFFTILRECPLLSEIKMETTNLGLDDFTTPLVINPQVK 397 (577)
Q Consensus 318 ~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~ 397 (577)
+|++|+++++. +++.. . ...+++|+.|+++++. ++.... ...+++|+.|++++|.+... ..+..+++|+
T Consensus 108 ~L~~L~l~~n~-l~~~~--~-l~~l~~L~~L~l~~n~-l~~~~~---l~~l~~L~~L~l~~n~l~~~---~~l~~l~~L~ 176 (308)
T 1h6u_A 108 SIKTLDLTSTQ-ITDVT--P-LAGLSNLQVLYLDLNQ-ITNISP---LAGLTNLQYLSIGNAQVSDL---TPLANLSKLT 176 (308)
T ss_dssp TCCEEECTTSC-CCCCG--G-GTTCTTCCEEECCSSC-CCCCGG---GGGCTTCCEEECCSSCCCCC---GGGTTCTTCC
T ss_pred CCCEEECCCCC-CCCch--h-hcCCCCCCEEECCCCc-cCcCcc---ccCCCCccEEEccCCcCCCC---hhhcCCCCCC
Confidence 55555555554 22211 1 1234555555555433 111110 22444555555554443321 1134444444
Q ss_pred EEEcCCC
Q 046157 398 SLHLARN 404 (577)
Q Consensus 398 ~L~l~~~ 404 (577)
.|++++|
T Consensus 177 ~L~l~~n 183 (308)
T 1h6u_A 177 TLKADDN 183 (308)
T ss_dssp EEECCSS
T ss_pred EEECCCC
Confidence 4444444
No 80
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.36 E-value=4.5e-13 Score=124.38 Aligned_cols=159 Identities=17% Similarity=0.145 Sum_probs=88.0
Q ss_pred hCCCCCeEEeeecc-CCCCcccccccCCCCccEEEcCCCCCCCHHHHHHHHhhCCCccEEecCCCCCCCHHHHHHHHhhC
Q 046157 367 ECPLLSEIKMETTN-LGLDDFTTPLVINPQVKSLHLARNGNLSDESLKKLAILCPNLEVIDLSHCLGITEEGIGEILKSC 445 (577)
Q Consensus 367 ~~~~L~~L~l~~~~-~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 445 (577)
.+++|++|++++|. +.... ...+..+++|+.|+++++. ++.... .....+++|++|+++++ .++... ...+..+
T Consensus 78 ~l~~L~~L~l~~n~~l~~~~-~~~~~~l~~L~~L~l~~n~-l~~~~~-~~~~~l~~L~~L~l~~n-~l~~~~-~~~~~~l 152 (285)
T 1ozn_A 78 GLALLEQLDLSDNAQLRSVD-PATFHGLGRLHTLHLDRCG-LQELGP-GLFRGLAALQYLYLQDN-ALQALP-DDTFRDL 152 (285)
T ss_dssp TCTTCCEEECCSCTTCCCCC-TTTTTTCTTCCEEECTTSC-CCCCCT-TTTTTCTTCCEEECCSS-CCCCCC-TTTTTTC
T ss_pred CccCCCEEeCCCCCCccccC-HHHhcCCcCCCEEECCCCc-CCEECH-hHhhCCcCCCEEECCCC-cccccC-HhHhccC
Confidence 34555555555554 32221 3345556666666666654 222111 11234566777777665 233211 1124556
Q ss_pred CCCcEEEccccccccccc--ccccCCCceEEEccCCCCCHHHHHHHHHhCCCccEEecCCCCCCChhhHHHHHhhCCCCc
Q 046157 446 CEIKCLEIKRCRAVFDLG--IDLELPKLEVLQASGSALNDHALKMIANTCSRILHLDLDNCLNVTTSGVKEVVEHCRTLR 523 (577)
Q Consensus 446 ~~L~~L~l~~~~~l~~~~--~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~c~~l~~~~l~~~~~~~~~L~ 523 (577)
++|+.|++++|. ++... ....+++|+.|++++|.+++.....+ ..+++|+.|++++| .++.... ..+..+++|+
T Consensus 153 ~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-~~l~~L~~L~l~~n-~l~~~~~-~~~~~l~~L~ 228 (285)
T 1ozn_A 153 GNLTHLFLHGNR-ISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAF-RDLGRLMTLYLFAN-NLSALPT-EALAPLRALQ 228 (285)
T ss_dssp TTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSSCCCEECTTTT-TTCTTCCEEECCSS-CCSCCCH-HHHTTCTTCC
T ss_pred CCccEEECCCCc-ccccCHHHhcCccccCEEECCCCcccccCHhHc-cCcccccEeeCCCC-cCCcCCH-HHcccCcccC
Confidence 777777777775 44333 23456777777777777665432222 24678888888876 3654333 3346778888
Q ss_pred EEEecCCCCCc
Q 046157 524 EINLRWCDEVN 534 (577)
Q Consensus 524 ~L~l~~c~~~~ 534 (577)
.|++++++-..
T Consensus 229 ~L~l~~N~~~c 239 (285)
T 1ozn_A 229 YLRLNDNPWVC 239 (285)
T ss_dssp EEECCSSCEEC
T ss_pred EEeccCCCccC
Confidence 88888875543
No 81
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.35 E-value=1.4e-13 Score=136.36 Aligned_cols=156 Identities=16% Similarity=0.073 Sum_probs=80.3
Q ss_pred cCCCcCeeecccccccChHHHHHHHhcCCCCCEEeecCCCCCChHHHHHHHhhCCCCCeEEeeeccCCCCcccccccCCC
Q 046157 315 KYQSLEHLNLEAANFLEDESMIDLSKFLTSLNFIDLGFCAKLTNSTFFTILRECPLLSEIKMETTNLGLDDFTTPLVINP 394 (577)
Q Consensus 315 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 394 (577)
.+++|++|+++++. ++..... ....+++|+.|+++++..+..... .....+++|+.|++++|.+.. +..+..++
T Consensus 134 ~l~~L~~L~L~~N~-i~~~~~~-~~~~l~~L~~L~l~~~~~l~~i~~-~~~~~l~~L~~L~L~~n~l~~---~~~~~~l~ 207 (440)
T 3zyj_A 134 YLSKLKELWLRNNP-IESIPSY-AFNRIPSLRRLDLGELKRLSYISE-GAFEGLSNLRYLNLAMCNLRE---IPNLTPLI 207 (440)
T ss_dssp SCSSCCEEECCSCC-CCEECTT-TTTTCTTCCEEECCCCTTCCEECT-TTTTTCSSCCEEECTTSCCSS---CCCCTTCS
T ss_pred ccccCceeeCCCCc-ccccCHH-HhhhCcccCEeCCCCCCCcceeCc-chhhcccccCeecCCCCcCcc---ccccCCCc
Confidence 34555555555554 2211111 112355666666665443322111 112346677777777766543 23456667
Q ss_pred CccEEEcCCCCCCCHHHHHHHHhhCCCccEEecCCCCCCCHHHHHHHHhhCCCCcEEEccccccccccc--ccccCCCce
Q 046157 395 QVKSLHLARNGNLSDESLKKLAILCPNLEVIDLSHCLGITEEGIGEILKSCCEIKCLEIKRCRAVFDLG--IDLELPKLE 472 (577)
Q Consensus 395 ~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~--~~~~~~~L~ 472 (577)
+|+.|++++|. ++..... ....+++|+.|+++++ .++.... ..+..+++|+.|++++|. ++... ....+++|+
T Consensus 208 ~L~~L~Ls~N~-l~~~~~~-~~~~l~~L~~L~L~~n-~l~~~~~-~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~ 282 (440)
T 3zyj_A 208 KLDELDLSGNH-LSAIRPG-SFQGLMHLQKLWMIQS-QIQVIER-NAFDNLQSLVEINLAHNN-LTLLPHDLFTPLHHLE 282 (440)
T ss_dssp SCCEEECTTSC-CCEECTT-TTTTCTTCCEEECTTC-CCCEECT-TSSTTCTTCCEEECTTSC-CCCCCTTTTSSCTTCC
T ss_pred ccCEEECCCCc-cCccChh-hhccCccCCEEECCCC-ceeEECh-hhhcCCCCCCEEECCCCC-CCccChhHhccccCCC
Confidence 77777777664 4332111 1234567777777766 3433221 124556777777777775 43333 233567777
Q ss_pred EEEccCCCC
Q 046157 473 VLQASGSAL 481 (577)
Q Consensus 473 ~L~l~~~~i 481 (577)
.|++++|.+
T Consensus 283 ~L~L~~Np~ 291 (440)
T 3zyj_A 283 RIHLHHNPW 291 (440)
T ss_dssp EEECCSSCE
T ss_pred EEEcCCCCc
Confidence 777777544
No 82
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.33 E-value=2.8e-11 Score=115.78 Aligned_cols=171 Identities=12% Similarity=0.159 Sum_probs=133.7
Q ss_pred CCCCCeEEeeeccCCCCc---cccccc-CCCCccEEEcCCCCCCCHHHHHHHHhhCCCccEEecCCCCCCCHHHHHHHHh
Q 046157 368 CPLLSEIKMETTNLGLDD---FTTPLV-INPQVKSLHLARNGNLSDESLKKLAILCPNLEVIDLSHCLGITEEGIGEILK 443 (577)
Q Consensus 368 ~~~L~~L~l~~~~~~~~~---~~~~~~-~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~ 443 (577)
.++|+.|++++|.++... +...+. ..++|+.|++++|. +++.++..+...+++|+.|++++| .+++.+...+..
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~-l~~~~~~~l~~~L~~L~~L~Ls~n-~l~~~~~~~L~~ 148 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQ-LDPAGLRTLLPVFLRARKLGLQLN-SLGPEACKDLRD 148 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCC-CCHHHHHHTHHHHHTEEEEECCSS-CCCHHHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCC-CCHHHHHHHHHHHHhccHhhcCCC-CCCHHHHHHHHH
Confidence 578999999999876543 111222 34799999999986 889888888877889999999998 788877766543
Q ss_pred ----hCCCCcEEEcccccccccccc------cccCCCceEEEccCCCCCHHHHHHHHH---hCCCccEEecCCCCCCChh
Q 046157 444 ----SCCEIKCLEIKRCRAVFDLGI------DLELPKLEVLQASGSALNDHALKMIAN---TCSRILHLDLDNCLNVTTS 510 (577)
Q Consensus 444 ----~~~~L~~L~l~~~~~l~~~~~------~~~~~~L~~L~l~~~~i~~~~~~~l~~---~~~~L~~L~l~~c~~l~~~ 510 (577)
..++|+.|++++|. +++.+. ....++|++|++++|.+++.+...+.. ..++|+.|++++| .+++.
T Consensus 149 ~L~~~~~~L~~L~Ls~n~-l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N-~i~~~ 226 (372)
T 3un9_A 149 LLLHDQCQITTLRLSNNP-LTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYN-GAGDT 226 (372)
T ss_dssp HHHSTTCCCCEEECCSSC-CHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSS-CCCHH
T ss_pred HHHhcCCccceeeCCCCC-CChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCC-CCCHH
Confidence 46889999999997 665442 136889999999999999988766653 4679999999997 59988
Q ss_pred hHHHHH---hhCCCCcEEEecCCCCCcHHHHHHHHH
Q 046157 511 GVKEVV---EHCRTLREINLRWCDEVNVDIVAWMVF 543 (577)
Q Consensus 511 ~l~~~~---~~~~~L~~L~l~~c~~~~~~~~~~~~~ 543 (577)
+...+. ..+++|++|++++|+ +++.++..+..
T Consensus 227 g~~~l~~~L~~~~~L~~L~Ls~N~-i~~~g~~~L~~ 261 (372)
T 3un9_A 227 AALALARAAREHPSLELLHLYFNE-LSSEGRQVLRD 261 (372)
T ss_dssp HHHHHHHHHHHCSSCCEEECTTSS-CCHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCEEeccCCC-CCHHHHHHHHH
Confidence 776664 467999999999984 77777776554
No 83
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.32 E-value=7e-12 Score=119.97 Aligned_cols=171 Identities=19% Similarity=0.187 Sum_probs=132.8
Q ss_pred CCCCCEEeecCCCCCChHHHHHHHhh----CCCCCeEEeeeccCCCCcccccccCCCCccEEEcCCCCCCCHHHHHHHHh
Q 046157 342 LTSLNFIDLGFCAKLTNSTFFTILRE----CPLLSEIKMETTNLGLDDFTTPLVINPQVKSLHLARNGNLSDESLKKLAI 417 (577)
Q Consensus 342 ~~~L~~L~l~~~~~~~~~~l~~l~~~----~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~l~~l~~ 417 (577)
.+.|+.|++++|. +++.....+... +++|++|++++|.++......-...+++|+.|++++|. +++.+...++.
T Consensus 71 ~~~L~~L~Ls~n~-l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~-l~~~~~~~L~~ 148 (372)
T 3un9_A 71 LSSLRQLNLAGVR-MTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNS-LGPEACKDLRD 148 (372)
T ss_dssp HTTCCEEECTTSC-CCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSC-CCHHHHHHHHH
T ss_pred HhhCCEEEecCCC-CCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCC-CCHHHHHHHHH
Confidence 5789999999965 777665554433 46999999999988665422223445689999999986 88888777754
Q ss_pred ----hCCCccEEecCCCCCCCHHHHHHH---HhhCCCCcEEEcccccccccccc------cccCCCceEEEccCCCCCHH
Q 046157 418 ----LCPNLEVIDLSHCLGITEEGIGEI---LKSCCEIKCLEIKRCRAVFDLGI------DLELPKLEVLQASGSALNDH 484 (577)
Q Consensus 418 ----~~~~L~~L~l~~~~~~~~~~~~~~---~~~~~~L~~L~l~~~~~l~~~~~------~~~~~~L~~L~l~~~~i~~~ 484 (577)
..++|++|++++| .+++.+...+ +..+++|+.|++++|. +++.+. ....++|++|++++|.+++.
T Consensus 149 ~L~~~~~~L~~L~Ls~n-~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~-l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~ 226 (372)
T 3un9_A 149 LLLHDQCQITTLRLSNN-PLTAAGVAVLMEGLAGNTSVTHLSLLHTG-LGDEGLELLAAQLDRNRQLQELNVAYNGAGDT 226 (372)
T ss_dssp HHHSTTCCCCEEECCSS-CCHHHHHHHHHHHHHTCSSCCEEECTTSS-CHHHHHHHHHHHGGGCSCCCEEECCSSCCCHH
T ss_pred HHHhcCCccceeeCCCC-CCChHHHHHHHHHHhcCCCcCEEeCCCCC-CCcHHHHHHHHHHhcCCCcCeEECCCCCCCHH
Confidence 3588999999998 6887665544 4678999999999998 665442 23567999999999999998
Q ss_pred HHHHHHH---hCCCccEEecCCCCCCChhhHHHHHh
Q 046157 485 ALKMIAN---TCSRILHLDLDNCLNVTTSGVKEVVE 517 (577)
Q Consensus 485 ~~~~l~~---~~~~L~~L~l~~c~~l~~~~l~~~~~ 517 (577)
+...++. .+++|++|++++|+ +++.+...+..
T Consensus 227 g~~~l~~~L~~~~~L~~L~Ls~N~-i~~~g~~~L~~ 261 (372)
T 3un9_A 227 AALALARAAREHPSLELLHLYFNE-LSSEGRQVLRD 261 (372)
T ss_dssp HHHHHHHHHHHCSSCCEEECTTSS-CCHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCEEeccCCC-CCHHHHHHHHH
Confidence 7766654 56899999999975 99999887754
No 84
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=99.32 E-value=9.4e-13 Score=108.70 Aligned_cols=93 Identities=11% Similarity=0.160 Sum_probs=84.3
Q ss_pred CCceEEEccCCCCCHHHHHHHHHhCCCccEEecCCCCCCChhhHHHHHh---hCCCCcEEEecCCCCCcHHHHHHHHHhC
Q 046157 469 PKLEVLQASGSALNDHALKMIANTCSRILHLDLDNCLNVTTSGVKEVVE---HCRTLREINLRWCDEVNVDIVAWMVFSR 545 (577)
Q Consensus 469 ~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~c~~l~~~~l~~~~~---~~~~L~~L~l~~c~~~~~~~~~~~~~~~ 545 (577)
.+|+.|+++++.+++.++..+. .|++|++|++++|..++|.++..+.. .+++|++|++++|+++++.++..+. ++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~-~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~-~~ 138 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHME-GLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALH-HF 138 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGT-TCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGG-GC
T ss_pred ceEeEEeCcCCCccHHHHHHhc-CCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHh-cC
Confidence 4688899998889999988874 79999999999999999999999875 3679999999999999999999876 69
Q ss_pred CCCceeccCCCCCCChhh
Q 046157 546 PSLRKIIPPCGFAPTESQ 563 (577)
Q Consensus 546 ~~L~~l~~~~~~~~~~~~ 563 (577)
|+|+.|+++.|..+++..
T Consensus 139 ~~L~~L~L~~c~~Itd~g 156 (176)
T 3e4g_A 139 RNLKYLFLSDLPGVKEKE 156 (176)
T ss_dssp TTCCEEEEESCTTCCCHH
T ss_pred CCCCEEECCCCCCCCchH
Confidence 999999999999999875
No 85
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.31 E-value=2.6e-13 Score=126.05 Aligned_cols=38 Identities=13% Similarity=0.067 Sum_probs=17.4
Q ss_pred hhCCCCcEEEccccccccccc--ccccCCCceEEEccCCCC
Q 046157 443 KSCCEIKCLEIKRCRAVFDLG--IDLELPKLEVLQASGSAL 481 (577)
Q Consensus 443 ~~~~~L~~L~l~~~~~l~~~~--~~~~~~~L~~L~l~~~~i 481 (577)
..+++|+.|++++|. ++... ....+++|+.|++++|.+
T Consensus 198 ~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~N~~ 237 (285)
T 1ozn_A 198 RDLGRLMTLYLFANN-LSALPTEALAPLRALQYLRLNDNPW 237 (285)
T ss_dssp TTCTTCCEEECCSSC-CSCCCHHHHTTCTTCCEEECCSSCE
T ss_pred cCcccccEeeCCCCc-CCcCCHHHcccCcccCEEeccCCCc
Confidence 344555555555554 22222 123455555555555444
No 86
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.30 E-value=3.9e-13 Score=126.30 Aligned_cols=158 Identities=17% Similarity=0.190 Sum_probs=94.1
Q ss_pred CCCCCEEeecCCCCCChHHHHHHHhhCCCCCeEEeeeccCCCCc-c--cccccCCCCccEEEcCCCCCCCH--HHHHHHH
Q 046157 342 LTSLNFIDLGFCAKLTNSTFFTILRECPLLSEIKMETTNLGLDD-F--TTPLVINPQVKSLHLARNGNLSD--ESLKKLA 416 (577)
Q Consensus 342 ~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~-~--~~~~~~~~~L~~L~l~~~~~l~~--~~l~~l~ 416 (577)
+++|++|+++++. +..... .....+++|++|++++|.+.... . ...+..+++|+.|++++|. ++. .....+.
T Consensus 144 ~~~L~~L~Ls~n~-l~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~~~l~ 220 (310)
T 4glp_A 144 KPGLKVLSIAQAH-SPAFSC-EQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTG-METPTGVCAALA 220 (310)
T ss_dssp CSCCCEEEEECCS-SCCCCT-TSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSC-CCCHHHHHHHHH
T ss_pred ccCCCEEEeeCCC-cchhhH-HHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCC-CCchHHHHHHHH
Confidence 5556666665543 111100 01124566677777666543211 1 1223567788888888876 542 2222344
Q ss_pred hhCCCccEEecCCCCCCCHHHHHHHHhhC---CCCcEEEcccccccccccccccCCCceEEEccCCCCCHHHHHHHHHhC
Q 046157 417 ILCPNLEVIDLSHCLGITEEGIGEILKSC---CEIKCLEIKRCRAVFDLGIDLELPKLEVLQASGSALNDHALKMIANTC 493 (577)
Q Consensus 417 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~---~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~ 493 (577)
..+++|++|++++| .+++..... +..+ ++|+.|++++|. ++...... +++|+.|++++|.++.... ...+
T Consensus 221 ~~l~~L~~L~Ls~N-~l~~~~p~~-~~~~~~~~~L~~L~Ls~N~-l~~lp~~~-~~~L~~L~Ls~N~l~~~~~---~~~l 293 (310)
T 4glp_A 221 AAGVQPHSLDLSHN-SLRATVNPS-APRCMWSSALNSLNLSFAG-LEQVPKGL-PAKLRVLDLSSNRLNRAPQ---PDEL 293 (310)
T ss_dssp HHTCCCSSEECTTS-CCCCCCCSC-CSSCCCCTTCCCEECCSSC-CCSCCSCC-CSCCSCEECCSCCCCSCCC---TTSC
T ss_pred hcCCCCCEEECCCC-CCCccchhh-HHhccCcCcCCEEECCCCC-CCchhhhh-cCCCCEEECCCCcCCCCch---hhhC
Confidence 56789999999987 444321111 2233 799999999987 55443222 3899999999998875321 2467
Q ss_pred CCccEEecCCCCCCChh
Q 046157 494 SRILHLDLDNCLNVTTS 510 (577)
Q Consensus 494 ~~L~~L~l~~c~~l~~~ 510 (577)
++|+.|++++++ +++.
T Consensus 294 ~~L~~L~L~~N~-l~~~ 309 (310)
T 4glp_A 294 PEVDNLTLDGNP-FLVP 309 (310)
T ss_dssp CCCSCEECSSTT-TSCC
T ss_pred CCccEEECcCCC-CCCC
Confidence 899999999864 6553
No 87
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.24 E-value=2.8e-11 Score=105.19 Aligned_cols=151 Identities=23% Similarity=0.236 Sum_probs=71.6
Q ss_pred CCCcCeeecccccccChHHHHHHHhcCCCCCEEeecCCCCCChHHHHHHHhhCCCCCeEEeeeccCCCCcccccccCCCC
Q 046157 316 YQSLEHLNLEAANFLEDESMIDLSKFLTSLNFIDLGFCAKLTNSTFFTILRECPLLSEIKMETTNLGLDDFTTPLVINPQ 395 (577)
Q Consensus 316 ~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 395 (577)
+++|++|+++++. +++-. . ...+++|++|+++++. +.... ....+++|++|++++|.+.... +..+..+++
T Consensus 43 l~~L~~L~l~~n~-i~~l~--~-l~~l~~L~~L~l~~n~-~~~~~---~l~~l~~L~~L~l~~n~l~~~~-~~~l~~l~~ 113 (197)
T 4ezg_A 43 MNSLTYITLANIN-VTDLT--G-IEYAHNIKDLTINNIH-ATNYN---PISGLSNLERLRIMGKDVTSDK-IPNLSGLTS 113 (197)
T ss_dssp HHTCCEEEEESSC-CSCCT--T-GGGCTTCSEEEEESCC-CSCCG---GGTTCTTCCEEEEECTTCBGGG-SCCCTTCTT
T ss_pred cCCccEEeccCCC-ccChH--H-HhcCCCCCEEEccCCC-CCcch---hhhcCCCCCEEEeECCccCccc-ChhhcCCCC
Confidence 3455555555554 22111 1 2235566666666552 22111 1234666666666666554322 344555666
Q ss_pred ccEEEcCCCCCCCHHHHHHHHhhCCCccEEecCCCCCCCHHHHHHHHhhCCCCcEEEcccccccccccccccCCCceEEE
Q 046157 396 VKSLHLARNGNLSDESLKKLAILCPNLEVIDLSHCLGITEEGIGEILKSCCEIKCLEIKRCRAVFDLGIDLELPKLEVLQ 475 (577)
Q Consensus 396 L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~ 475 (577)
|+.|++++|. +++.....+. .+++|++|++++|..+++.. .+..+++|+.|++++|. +++......+++|+.|+
T Consensus 114 L~~L~Ls~n~-i~~~~~~~l~-~l~~L~~L~L~~n~~i~~~~---~l~~l~~L~~L~l~~n~-i~~~~~l~~l~~L~~L~ 187 (197)
T 4ezg_A 114 LTLLDISHSA-HDDSILTKIN-TLPKVNSIDLSYNGAITDIM---PLKTLPELKSLNIQFDG-VHDYRGIEDFPKLNQLY 187 (197)
T ss_dssp CCEEECCSSB-CBGGGHHHHT-TCSSCCEEECCSCTBCCCCG---GGGGCSSCCEEECTTBC-CCCCTTGGGCSSCCEEE
T ss_pred CCEEEecCCc-cCcHhHHHHh-hCCCCCEEEccCCCCccccH---hhcCCCCCCEEECCCCC-CcChHHhccCCCCCEEE
Confidence 6666666654 4443333332 35566666666653233321 24455555555555554 33333333445555555
Q ss_pred ccCCCC
Q 046157 476 ASGSAL 481 (577)
Q Consensus 476 l~~~~i 481 (577)
+++|.+
T Consensus 188 l~~N~i 193 (197)
T 4ezg_A 188 AFSQTI 193 (197)
T ss_dssp ECBC--
T ss_pred eeCccc
Confidence 555444
No 88
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.21 E-value=1.8e-12 Score=119.71 Aligned_cols=108 Identities=19% Similarity=0.151 Sum_probs=45.9
Q ss_pred CCCcEEEecCCCCCCHHHHHHHHhcCCCcCeeecccccccChHHHHHHHhcCCCCCEEeecCCCCCChHHHHHHHhhCCC
Q 046157 291 LPLKKLVLSHCYNFTLAGISFLLSKYQSLEHLNLEAANFLEDESMIDLSKFLTSLNFIDLGFCAKLTNSTFFTILRECPL 370 (577)
Q Consensus 291 ~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~ 370 (577)
+++++|+++++.... ... ..+..+++|++|+++++. ++......+ ..+++|++|+++++. ++.... .....+++
T Consensus 28 ~~l~~L~ls~n~l~~-~~~-~~~~~l~~L~~L~l~~n~-l~~~~~~~~-~~l~~L~~L~L~~n~-l~~~~~-~~~~~l~~ 101 (276)
T 2z62_A 28 FSTKNLDLSFNPLRH-LGS-YSFFSFPELQVLDLSRCE-IQTIEDGAY-QSLSHLSTLILTGNP-IQSLAL-GAFSGLSS 101 (276)
T ss_dssp TTCCEEECTTCCCCE-ECT-TTTTTCTTCSEEECTTCC-CCEECTTTT-TTCTTCCEEECTTCC-CCEECT-TTTTTCTT
T ss_pred CCccEEECCCCcccc-cCH-hHhccccCCcEEECCCCc-CCccCHHHc-cCCcCCCEEECCCCc-cCccCh-hhhcCCcc
Confidence 357777776653221 000 013345666666666654 222111111 224555666655533 111100 01123455
Q ss_pred CCeEEeeeccCCCCcccccccCCCCccEEEcCCCC
Q 046157 371 LSEIKMETTNLGLDDFTTPLVINPQVKSLHLARNG 405 (577)
Q Consensus 371 L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 405 (577)
|++|++.+|.+.... ...+..+++|+.|+++++.
T Consensus 102 L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~n~ 135 (276)
T 2z62_A 102 LQKLVAVETNLASLE-NFPIGHLKTLKELNVAHNL 135 (276)
T ss_dssp CCEEECTTSCCCCST-TCCCTTCTTCCEEECCSSC
T ss_pred ccEEECCCCCccccC-chhcccCCCCCEEECcCCc
Confidence 555555555443322 2224444555555555443
No 89
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.20 E-value=4.1e-11 Score=111.06 Aligned_cols=80 Identities=14% Similarity=0.167 Sum_probs=37.5
Q ss_pred hhCCCCcEEEcccccccccccccccCCCceEEEccCCCCCHHHHHHHHHhCCCccEEecCCCCCCChhhHHHHHhhCCCC
Q 046157 443 KSCCEIKCLEIKRCRAVFDLGIDLELPKLEVLQASGSALNDHALKMIANTCSRILHLDLDNCLNVTTSGVKEVVEHCRTL 522 (577)
Q Consensus 443 ~~~~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~c~~l~~~~l~~~~~~~~~L 522 (577)
..+++|+.|++++|. ++.......+++|+.|++++|.+++... ...+++|+.|++++|. +++.. . +..+++|
T Consensus 131 ~~l~~L~~L~l~~n~-l~~~~~l~~l~~L~~L~L~~N~l~~~~~---l~~l~~L~~L~L~~N~-i~~l~--~-l~~l~~L 202 (291)
T 1h6t_A 131 VHLPQLESLYLGNNK-ITDITVLSRLTKLDTLSLEDNQISDIVP---LAGLTKLQNLYLSKNH-ISDLR--A-LAGLKNL 202 (291)
T ss_dssp GGCTTCCEEECCSSC-CCCCGGGGGCTTCSEEECCSSCCCCCGG---GTTCTTCCEEECCSSC-CCBCG--G-GTTCTTC
T ss_pred cCCCCCCEEEccCCc-CCcchhhccCCCCCEEEccCCccccchh---hcCCCccCEEECCCCc-CCCCh--h-hccCCCC
Confidence 344555555555544 3333333345555555555554443221 2234555555555542 43321 1 3445556
Q ss_pred cEEEecCC
Q 046157 523 REINLRWC 530 (577)
Q Consensus 523 ~~L~l~~c 530 (577)
+.|+++++
T Consensus 203 ~~L~l~~n 210 (291)
T 1h6t_A 203 DVLELFSQ 210 (291)
T ss_dssp SEEEEEEE
T ss_pred CEEECcCC
Confidence 66655554
No 90
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.17 E-value=4.7e-11 Score=103.74 Aligned_cols=131 Identities=15% Similarity=0.257 Sum_probs=80.0
Q ss_pred CCCCCEEeecCCCCCChHHHHHHHhhCCCCCeEEeeeccCCCCcccccccCCCCccEEEcCCCCCCCHHHHHHHHhhCCC
Q 046157 342 LTSLNFIDLGFCAKLTNSTFFTILRECPLLSEIKMETTNLGLDDFTTPLVINPQVKSLHLARNGNLSDESLKKLAILCPN 421 (577)
Q Consensus 342 ~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~ 421 (577)
+++|+.|+++++. +++-. -...+++|++|++.+|.+.. +..+..+++|+.|++++|. +++.....+ ..+++
T Consensus 43 l~~L~~L~l~~n~-i~~l~---~l~~l~~L~~L~l~~n~~~~---~~~l~~l~~L~~L~l~~n~-l~~~~~~~l-~~l~~ 113 (197)
T 4ezg_A 43 MNSLTYITLANIN-VTDLT---GIEYAHNIKDLTINNIHATN---YNPISGLSNLERLRIMGKD-VTSDKIPNL-SGLTS 113 (197)
T ss_dssp HHTCCEEEEESSC-CSCCT---TGGGCTTCSEEEEESCCCSC---CGGGTTCTTCCEEEEECTT-CBGGGSCCC-TTCTT
T ss_pred cCCccEEeccCCC-ccChH---HHhcCCCCCEEEccCCCCCc---chhhhcCCCCCEEEeECCc-cCcccChhh-cCCCC
Confidence 4578888888754 32211 14467888888888874432 3466677888888888765 544333322 24677
Q ss_pred ccEEecCCCCCCCHHHHHHHHhhCCCCcEEEcccccccccccccccCCCceEEEccCCCCCH
Q 046157 422 LEVIDLSHCLGITEEGIGEILKSCCEIKCLEIKRCRAVFDLGIDLELPKLEVLQASGSALND 483 (577)
Q Consensus 422 L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~i~~ 483 (577)
|+.|++++| .+++..... +..+++|+.|++++|..+++......+++|+.|++++|.+++
T Consensus 114 L~~L~Ls~n-~i~~~~~~~-l~~l~~L~~L~L~~n~~i~~~~~l~~l~~L~~L~l~~n~i~~ 173 (197)
T 4ezg_A 114 LTLLDISHS-AHDDSILTK-INTLPKVNSIDLSYNGAITDIMPLKTLPELKSLNIQFDGVHD 173 (197)
T ss_dssp CCEEECCSS-BCBGGGHHH-HTTCSSCCEEECCSCTBCCCCGGGGGCSSCCEEECTTBCCCC
T ss_pred CCEEEecCC-ccCcHhHHH-HhhCCCCCEEEccCCCCccccHhhcCCCCCCEEECCCCCCcC
Confidence 888888776 455543333 566777777777777655554434445555555555555443
No 91
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.15 E-value=5.6e-11 Score=110.15 Aligned_cols=166 Identities=16% Similarity=0.168 Sum_probs=111.0
Q ss_pred CCCCCeEEeeeccCCCCcccccccCCCCccEEEcCCCCCCCHHHHHHHHhhCCCccEEecCCCCCCCHHHHHHHHhhCCC
Q 046157 368 CPLLSEIKMETTNLGLDDFTTPLVINPQVKSLHLARNGNLSDESLKKLAILCPNLEVIDLSHCLGITEEGIGEILKSCCE 447 (577)
Q Consensus 368 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 447 (577)
+++|+.|++.++.+... ..+..+++|+.|++++|. +++... ...+++|+.|+++++ .+++. .. +..+++
T Consensus 45 l~~L~~L~l~~~~i~~~---~~~~~l~~L~~L~L~~n~-l~~~~~---l~~l~~L~~L~l~~n-~l~~~--~~-l~~l~~ 113 (291)
T 1h6t_A 45 LNSIDQIIANNSDIKSV---QGIQYLPNVTKLFLNGNK-LTDIKP---LANLKNLGWLFLDEN-KVKDL--SS-LKDLKK 113 (291)
T ss_dssp HHTCCEEECTTSCCCCC---TTGGGCTTCCEEECCSSC-CCCCGG---GTTCTTCCEEECCSS-CCCCG--GG-GTTCTT
T ss_pred cCcccEEEccCCCcccC---hhHhcCCCCCEEEccCCc-cCCCcc---cccCCCCCEEECCCC-cCCCC--hh-hccCCC
Confidence 34455555555443321 234455666666666654 332111 335677777777776 34432 12 567888
Q ss_pred CcEEEcccccccccccccccCCCceEEEccCCCCCHHHHHHHHHhCCCccEEecCCCCCCChhhHHHHHhhCCCCcEEEe
Q 046157 448 IKCLEIKRCRAVFDLGIDLELPKLEVLQASGSALNDHALKMIANTCSRILHLDLDNCLNVTTSGVKEVVEHCRTLREINL 527 (577)
Q Consensus 448 L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~c~~l~~~~l~~~~~~~~~L~~L~l 527 (577)
|+.|++++|. +........+++|+.|++++|.+++. . ....+++|+.|++++|. ++...- +..+++|+.|++
T Consensus 114 L~~L~L~~n~-i~~~~~l~~l~~L~~L~l~~n~l~~~--~-~l~~l~~L~~L~L~~N~-l~~~~~---l~~l~~L~~L~L 185 (291)
T 1h6t_A 114 LKSLSLEHNG-ISDINGLVHLPQLESLYLGNNKITDI--T-VLSRLTKLDTLSLEDNQ-ISDIVP---LAGLTKLQNLYL 185 (291)
T ss_dssp CCEEECTTSC-CCCCGGGGGCTTCCEEECCSSCCCCC--G-GGGGCTTCSEEECCSSC-CCCCGG---GTTCTTCCEEEC
T ss_pred CCEEECCCCc-CCCChhhcCCCCCCEEEccCCcCCcc--h-hhccCCCCCEEEccCCc-cccchh---hcCCCccCEEEC
Confidence 9999998886 55555556789999999999988874 2 23468999999999974 665432 578999999999
Q ss_pred cCCCCCcHHHHHHHHHhCCCCceeccCCC
Q 046157 528 RWCDEVNVDIVAWMVFSRPSLRKIIPPCG 556 (577)
Q Consensus 528 ~~c~~~~~~~~~~~~~~~~~L~~l~~~~~ 556 (577)
++|. +++ +.. ...+++|+.|+++++
T Consensus 186 ~~N~-i~~--l~~-l~~l~~L~~L~l~~n 210 (291)
T 1h6t_A 186 SKNH-ISD--LRA-LAGLKNLDVLELFSQ 210 (291)
T ss_dssp CSSC-CCB--CGG-GTTCTTCSEEEEEEE
T ss_pred CCCc-CCC--Chh-hccCCCCCEEECcCC
Confidence 9984 332 222 467999999999854
No 92
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.15 E-value=1.6e-11 Score=112.87 Aligned_cols=85 Identities=15% Similarity=0.106 Sum_probs=39.9
Q ss_pred hhCCCCcEEEcccccccccccc--cccCCCceEEEccCCCCCHHHHHHHHHhCCCccEEecCCCCCCChhhHHHHHhhCC
Q 046157 443 KSCCEIKCLEIKRCRAVFDLGI--DLELPKLEVLQASGSALNDHALKMIANTCSRILHLDLDNCLNVTTSGVKEVVEHCR 520 (577)
Q Consensus 443 ~~~~~L~~L~l~~~~~l~~~~~--~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~c~~l~~~~l~~~~~~~~ 520 (577)
..+++|+.|++++|. ++.... ...+++|+.|++++|.++..... ....+++|+.|++++|. ++... ...+..++
T Consensus 130 ~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~L~~N~-l~~~~-~~~~~~l~ 205 (272)
T 3rfs_A 130 DKLTNLTYLNLAHNQ-LQSLPKGVFDKLTNLTELDLSYNQLQSLPEG-VFDKLTQLKDLRLYQNQ-LKSVP-DGVFDRLT 205 (272)
T ss_dssp TTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCTT-TTTTCTTCCEEECCSSC-CSCCC-TTTTTTCT
T ss_pred ccCCCCCEEECCCCc-cCccCHHHhccCccCCEEECCCCCcCccCHH-HhcCCccCCEEECCCCc-CCccC-HHHHhCCc
Confidence 344555555555553 332221 23455555555555555432111 11234566666666543 43221 12234566
Q ss_pred CCcEEEecCCC
Q 046157 521 TLREINLRWCD 531 (577)
Q Consensus 521 ~L~~L~l~~c~ 531 (577)
+|+.|++++++
T Consensus 206 ~L~~L~l~~N~ 216 (272)
T 3rfs_A 206 SLQYIWLHDNP 216 (272)
T ss_dssp TCCEEECCSSC
T ss_pred CCCEEEccCCC
Confidence 66666666654
No 93
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.14 E-value=8.3e-12 Score=115.21 Aligned_cols=132 Identities=17% Similarity=0.062 Sum_probs=62.7
Q ss_pred cCCCEEEcCCCCCChHHHHHHHhcCCCCcEEEecCCCCCCHHHHHHHHhcCCCcCeeecccccccChHHHHHHHhcCCCC
Q 046157 266 RGLCEIDLSNSFISDELLRLLGEACLPLKKLVLSHCYNFTLAGISFLLSKYQSLEHLNLEAANFLEDESMIDLSKFLTSL 345 (577)
Q Consensus 266 ~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L 345 (577)
+++++|+++++.+.......+ ..+++|+.|+++++.... .. ...+..+++|++|+++++. ++......+ ..+++|
T Consensus 28 ~~l~~L~ls~n~l~~~~~~~~-~~l~~L~~L~l~~n~l~~-~~-~~~~~~l~~L~~L~L~~n~-l~~~~~~~~-~~l~~L 102 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGSYSF-FSFPELQVLDLSRCEIQT-IE-DGAYQSLSHLSTLILTGNP-IQSLALGAF-SGLSSL 102 (276)
T ss_dssp TTCCEEECTTCCCCEECTTTT-TTCTTCSEEECTTCCCCE-EC-TTTTTTCTTCCEEECTTCC-CCEECTTTT-TTCTTC
T ss_pred CCccEEECCCCcccccCHhHh-ccccCCcEEECCCCcCCc-cC-HHHccCCcCCCEEECCCCc-cCccChhhh-cCCccc
Confidence 356677776665543222112 235667777766653211 00 0113445666777766665 222211111 235666
Q ss_pred CEEeecCCCCCChHHHHHHHhhCCCCCeEEeeeccCCCCcccccccCCCCccEEEcCCC
Q 046157 346 NFIDLGFCAKLTNSTFFTILRECPLLSEIKMETTNLGLDDFTTPLVINPQVKSLHLARN 404 (577)
Q Consensus 346 ~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 404 (577)
++|+++++. +....-. ....+++|++|++++|.+.....+..+..+++|+.|++++|
T Consensus 103 ~~L~l~~n~-l~~~~~~-~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N 159 (276)
T 2z62_A 103 QKLVAVETN-LASLENF-PIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSN 159 (276)
T ss_dssp CEEECTTSC-CCCSTTC-CCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSS
T ss_pred cEEECCCCC-ccccCch-hcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCC
Confidence 777666543 1110000 02345667777776666544333334444555555555544
No 94
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.11 E-value=8.8e-11 Score=107.76 Aligned_cols=157 Identities=13% Similarity=0.102 Sum_probs=83.7
Q ss_pred hCCCCCeEEeeeccCCCCcccccccCCCCccEEEcCCCCCCCHHHHHHHHhhCCCccEEecCCCCCCCHHHHHHHHhhCC
Q 046157 367 ECPLLSEIKMETTNLGLDDFTTPLVINPQVKSLHLARNGNLSDESLKKLAILCPNLEVIDLSHCLGITEEGIGEILKSCC 446 (577)
Q Consensus 367 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 446 (577)
.+++|++|++++|.+.... ...+..+++|+.|+++++. +..... .....+++|++|+++++ .++... ...+..++
T Consensus 59 ~l~~L~~L~l~~n~l~~i~-~~~~~~l~~L~~L~l~~n~-l~~~~~-~~~~~l~~L~~L~l~~n-~l~~~~-~~~~~~l~ 133 (270)
T 2o6q_A 59 RLTKLRLLYLNDNKLQTLP-AGIFKELKNLETLWVTDNK-LQALPI-GVFDQLVNLAELRLDRN-QLKSLP-PRVFDSLT 133 (270)
T ss_dssp SCTTCCEEECCSSCCSCCC-TTTTSSCTTCCEEECCSSC-CCCCCT-TTTTTCSSCCEEECCSS-CCCCCC-TTTTTTCT
T ss_pred CCCCCCEEECCCCccCeeC-hhhhcCCCCCCEEECCCCc-CCcCCH-hHcccccCCCEEECCCC-ccCeeC-HHHhCcCc
Confidence 3455555555555443221 2223455666666666554 222111 11223566666666665 232211 11235567
Q ss_pred CCcEEEccccccccccc--ccccCCCceEEEccCCCCCHHHHHHHHHhCCCccEEecCCCCCCChhhHHHHHhhCCCCcE
Q 046157 447 EIKCLEIKRCRAVFDLG--IDLELPKLEVLQASGSALNDHALKMIANTCSRILHLDLDNCLNVTTSGVKEVVEHCRTLRE 524 (577)
Q Consensus 447 ~L~~L~l~~~~~l~~~~--~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~c~~l~~~~l~~~~~~~~~L~~ 524 (577)
+|+.|++++|. ++... ....+++|+.|++++|.++......+ ..+++|+.|++++| .++.... ..+..+++|+.
T Consensus 134 ~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~-~~l~~L~~L~L~~N-~l~~~~~-~~~~~l~~L~~ 209 (270)
T 2o6q_A 134 KLTYLSLGYNE-LQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAF-DKLTELKTLKLDNN-QLKRVPE-GAFDSLEKLKM 209 (270)
T ss_dssp TCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTT-TTCTTCCEEECCSS-CCSCCCT-TTTTTCTTCCE
T ss_pred CCCEEECCCCc-CCccCHhHccCCcccceeEecCCcCcEeChhHh-ccCCCcCEEECCCC-cCCcCCH-HHhccccCCCE
Confidence 77777777775 33333 23456777777777776654322212 24678888888876 3553222 22356788888
Q ss_pred EEecCCCC
Q 046157 525 INLRWCDE 532 (577)
Q Consensus 525 L~l~~c~~ 532 (577)
|+++++|.
T Consensus 210 L~l~~N~~ 217 (270)
T 2o6q_A 210 LQLQENPW 217 (270)
T ss_dssp EECCSSCB
T ss_pred EEecCCCe
Confidence 88887653
No 95
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=99.09 E-value=9e-10 Score=104.29 Aligned_cols=185 Identities=18% Similarity=0.200 Sum_probs=102.4
Q ss_pred cCCCCCEEeecCCCC-------CChHHHHHHHhhCCCCCeEEeeeccCCCCcccccccCCCCccEEEcCCCCCCCHHHHH
Q 046157 341 FLTSLNFIDLGFCAK-------LTNSTFFTILRECPLLSEIKMETTNLGLDDFTTPLVINPQVKSLHLARNGNLSDESLK 413 (577)
Q Consensus 341 ~~~~L~~L~l~~~~~-------~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~l~ 413 (577)
.+++|+.|.+..... +....+..+...+|+|++|++.++.- .. ...+ ..++|++|++..|. +++..+.
T Consensus 137 ~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~--l~-l~~~-~~~~L~~L~L~~~~-l~~~~l~ 211 (362)
T 2ra8_A 137 KFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNN--LS-IGKK-PRPNLKSLEIISGG-LPDSVVE 211 (362)
T ss_dssp HHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBT--CB-CCSC-BCTTCSEEEEECSB-CCHHHHH
T ss_pred hcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCC--ce-eccc-cCCCCcEEEEecCC-CChHHHH
Confidence 367888888865321 11113556666778888888876521 01 1111 25566666665433 5555554
Q ss_pred HHHh-hCCCccEEecCCCCC--CCHHHHHHHHhhCCCCcEEEccccccccccc--c-cccCCCceEEEccCCCCCHHHHH
Q 046157 414 KLAI-LCPNLEVIDLSHCLG--ITEEGIGEILKSCCEIKCLEIKRCRAVFDLG--I-DLELPKLEVLQASGSALNDHALK 487 (577)
Q Consensus 414 ~l~~-~~~~L~~L~l~~~~~--~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~--~-~~~~~~L~~L~l~~~~i~~~~~~ 487 (577)
.++. .+|+|+.|+++.+.. ..+. .+.... + ...+|+|+.|.+.+|.+++....
T Consensus 212 ~l~~~~lp~L~~L~L~~~~~~~~~~~---------------------~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~ 270 (362)
T 2ra8_A 212 DILGSDLPNLEKLVLYVGVEDYGFDG---------------------DMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVE 270 (362)
T ss_dssp HHHHSBCTTCCEEEEECBCGGGTCCS---------------------CGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHH
T ss_pred HHHHccCCCCcEEEEeccccccccch---------------------hHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHH
Confidence 4442 355555555532100 0000 010000 0 12467777777777777776655
Q ss_pred HHHH--hCCCccEEecCCCCCCChhhHHHHH---hhCCCCcEEEecCCCCCcHHHHHHHHHhCCCCceeccCC
Q 046157 488 MIAN--TCSRILHLDLDNCLNVTTSGVKEVV---EHCRTLREINLRWCDEVNVDIVAWMVFSRPSLRKIIPPC 555 (577)
Q Consensus 488 ~l~~--~~~~L~~L~l~~c~~l~~~~l~~~~---~~~~~L~~L~l~~c~~~~~~~~~~~~~~~~~L~~l~~~~ 555 (577)
.+++ .+++|+.|+|+.| .+++.+...+. ..+++|+.|++++| .++++.+..+.+.+ ...++++.
T Consensus 271 ~la~a~~~~~L~~LdLs~n-~L~d~G~~~L~~~L~~l~~L~~L~L~~n-~i~d~~~~~l~~al--g~~~~~~~ 339 (362)
T 2ra8_A 271 MFLESDILPQLETMDISAG-VLTDEGARLLLDHVDKIKHLKFINMKYN-YLSDEMKKELQKSL--PMKIDVSD 339 (362)
T ss_dssp HHHHCSSGGGCSEEECCSS-CCBHHHHHHHHTTHHHHTTCSEEECCSB-BCCHHHHHHHHHHC--CSEEECCS
T ss_pred HHHhCccCCCCCEEECCCC-CCChHHHHHHHhhcccCCcceEEECCCC-cCCHHHHHHHHHHc--CCEEEecC
Confidence 5553 3567888888664 57777666654 34678888888777 47777777766655 34455554
No 96
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.08 E-value=1.2e-10 Score=118.60 Aligned_cols=168 Identities=17% Similarity=0.190 Sum_probs=124.8
Q ss_pred CCCCCEEeecCCCCCChHHHHHHHhhCCCCCeEEeeeccCCCCcccccccCCCCccEEEcCCCCCCCHHHHHHHHhhCCC
Q 046157 342 LTSLNFIDLGFCAKLTNSTFFTILRECPLLSEIKMETTNLGLDDFTTPLVINPQVKSLHLARNGNLSDESLKKLAILCPN 421 (577)
Q Consensus 342 ~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~ 421 (577)
+++|+.|+++++. +.... . +..+++|+.|++++|.+.... .+..+++|+.|++++|. +.+. . ....+++
T Consensus 42 L~~L~~L~l~~n~-i~~l~--~-l~~l~~L~~L~Ls~N~l~~~~---~l~~l~~L~~L~Ls~N~-l~~l--~-~l~~l~~ 110 (605)
T 1m9s_A 42 LNSIDQIIANNSD-IKSVQ--G-IQYLPNVTKLFLNGNKLTDIK---PLTNLKNLGWLFLDENK-IKDL--S-SLKDLKK 110 (605)
T ss_dssp HTTCCCCBCTTCC-CCCCT--T-GGGCTTCCEEECTTSCCCCCG---GGGGCTTCCEEECCSSC-CCCC--T-TSTTCTT
T ss_pred CCCCCEEECcCCC-CCCCh--H-HccCCCCCEEEeeCCCCCCCh---hhccCCCCCEEECcCCC-CCCC--h-hhccCCC
Confidence 6789999998865 22211 1 457899999999998876533 37889999999999986 4432 1 2345789
Q ss_pred ccEEecCCCCCCCHHHHHHHHhhCCCCcEEEcccccccccccccccCCCceEEEccCCCCCHHHHHHHHHhCCCccEEec
Q 046157 422 LEVIDLSHCLGITEEGIGEILKSCCEIKCLEIKRCRAVFDLGIDLELPKLEVLQASGSALNDHALKMIANTCSRILHLDL 501 (577)
Q Consensus 422 L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l 501 (577)
|+.|++++| .+.+. ..+..+++|+.|+|++|. +........+++|+.|+|++|.+.+... ...+++|+.|+|
T Consensus 111 L~~L~Ls~N-~l~~l---~~l~~l~~L~~L~Ls~N~-l~~l~~l~~l~~L~~L~Ls~N~l~~~~~---l~~l~~L~~L~L 182 (605)
T 1m9s_A 111 LKSLSLEHN-GISDI---NGLVHLPQLESLYLGNNK-ITDITVLSRLTKLDTLSLEDNQISDIVP---LAGLTKLQNLYL 182 (605)
T ss_dssp CCEEECTTS-CCCCC---GGGGGCTTCSEEECCSSC-CCCCGGGGSCTTCSEEECCSSCCCCCGG---GTTCTTCCEEEC
T ss_pred CCEEEecCC-CCCCC---ccccCCCccCEEECCCCc-cCCchhhcccCCCCEEECcCCcCCCchh---hccCCCCCEEEC
Confidence 999999998 45442 226788999999999987 5555556688999999999998876433 346889999999
Q ss_pred CCCCCCChhhHHHHHhhCCCCcEEEecCCCC
Q 046157 502 DNCLNVTTSGVKEVVEHCRTLREINLRWCDE 532 (577)
Q Consensus 502 ~~c~~l~~~~l~~~~~~~~~L~~L~l~~c~~ 532 (577)
++|. +++. .. +..+++|+.|++++|+-
T Consensus 183 s~N~-i~~l--~~-l~~l~~L~~L~L~~N~l 209 (605)
T 1m9s_A 183 SKNH-ISDL--RA-LAGLKNLDVLELFSQEC 209 (605)
T ss_dssp CSSC-CCBC--GG-GTTCTTCSEEECCSEEE
T ss_pred cCCC-CCCC--hH-HccCCCCCEEEccCCcC
Confidence 9974 6653 22 47789999999998753
No 97
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.07 E-value=3.4e-10 Score=115.33 Aligned_cols=145 Identities=22% Similarity=0.203 Sum_probs=76.9
Q ss_pred CCCCCEEeecCCCCCChHHHHHHHhhCCCCCeEEeeeccCCCCcccccccCCCCccEEEcCCCCCCCHHHHHHHHhhCCC
Q 046157 342 LTSLNFIDLGFCAKLTNSTFFTILRECPLLSEIKMETTNLGLDDFTTPLVINPQVKSLHLARNGNLSDESLKKLAILCPN 421 (577)
Q Consensus 342 ~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~ 421 (577)
+++|+.|+++++. +....- ...+++|+.|++++|.+.. +..+..+++|+.|++++|. +.+. .. ...+++
T Consensus 64 l~~L~~L~Ls~N~-l~~~~~---l~~l~~L~~L~Ls~N~l~~---l~~l~~l~~L~~L~Ls~N~-l~~l--~~-l~~l~~ 132 (605)
T 1m9s_A 64 LPNVTKLFLNGNK-LTDIKP---LTNLKNLGWLFLDENKIKD---LSSLKDLKKLKSLSLEHNG-ISDI--NG-LVHLPQ 132 (605)
T ss_dssp CTTCCEEECTTSC-CCCCGG---GGGCTTCCEEECCSSCCCC---CTTSTTCTTCCEEECTTSC-CCCC--GG-GGGCTT
T ss_pred CCCCCEEEeeCCC-CCCChh---hccCCCCCEEECcCCCCCC---ChhhccCCCCCEEEecCCC-CCCC--cc-ccCCCc
Confidence 5555566555543 211110 3355666666666665543 2345556666666666654 3321 11 234566
Q ss_pred ccEEecCCCCCCCHHHHHHHHhhCCCCcEEEcccccccccccccccCCCceEEEccCCCCCHHHHHHHHHhCCCccEEec
Q 046157 422 LEVIDLSHCLGITEEGIGEILKSCCEIKCLEIKRCRAVFDLGIDLELPKLEVLQASGSALNDHALKMIANTCSRILHLDL 501 (577)
Q Consensus 422 L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l 501 (577)
|+.|++++| .++.. ..+..+++|+.|+|++|. +........+++|+.|+|++|.+++. .. ...+++|+.|++
T Consensus 133 L~~L~Ls~N-~l~~l---~~l~~l~~L~~L~Ls~N~-l~~~~~l~~l~~L~~L~Ls~N~i~~l--~~-l~~l~~L~~L~L 204 (605)
T 1m9s_A 133 LESLYLGNN-KITDI---TVLSRLTKLDTLSLEDNQ-ISDIVPLAGLTKLQNLYLSKNHISDL--RA-LAGLKNLDVLEL 204 (605)
T ss_dssp CSEEECCSS-CCCCC---GGGGSCTTCSEEECCSSC-CCCCGGGTTCTTCCEEECCSSCCCBC--GG-GTTCTTCSEEEC
T ss_pred cCEEECCCC-ccCCc---hhhcccCCCCEEECcCCc-CCCchhhccCCCCCEEECcCCCCCCC--hH-HccCCCCCEEEc
Confidence 666666665 34332 234566666666666665 33332244566677777766666552 11 224566777777
Q ss_pred CCCC
Q 046157 502 DNCL 505 (577)
Q Consensus 502 ~~c~ 505 (577)
++|+
T Consensus 205 ~~N~ 208 (605)
T 1m9s_A 205 FSQE 208 (605)
T ss_dssp CSEE
T ss_pred cCCc
Confidence 6653
No 98
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=99.05 E-value=1.9e-09 Score=102.04 Aligned_cols=188 Identities=16% Similarity=0.182 Sum_probs=118.2
Q ss_pred HhcCCCcCeeecccccc-------cChHHHHHHHhcCCCCCEEeecCCCCCChHHHHHHHhhCCCCCeEEeeeccCCCCc
Q 046157 313 LSKYQSLEHLNLEAANF-------LEDESMIDLSKFLTSLNFIDLGFCAKLTNSTFFTILRECPLLSEIKMETTNLGLDD 385 (577)
Q Consensus 313 ~~~~~~L~~L~l~~~~~-------~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~ 385 (577)
...+++|+.|.+..... +....+..+...+|+|+.|+++++..+... .+ ..++|++|++..+.+....
T Consensus 135 ~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l~l~---~~--~~~~L~~L~L~~~~l~~~~ 209 (362)
T 2ra8_A 135 KEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLSIG---KK--PRPNLKSLEIISGGLPDSV 209 (362)
T ss_dssp HHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTCBCC---SC--BCTTCSEEEEECSBCCHHH
T ss_pred hhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCceec---cc--cCCCCcEEEEecCCCChHH
Confidence 34678999999865421 111235566666899999999886322211 11 3789999999988765433
Q ss_pred ccccc--cCCCCccEEEcCCCCC--CCHH---HHHHHH--hhCCCccEEecCCCCCCCHHHHHHHHhhCCCCcEEEcccc
Q 046157 386 FTTPL--VINPQVKSLHLARNGN--LSDE---SLKKLA--ILCPNLEVIDLSHCLGITEEGIGEILKSCCEIKCLEIKRC 456 (577)
Q Consensus 386 ~~~~~--~~~~~L~~L~l~~~~~--l~~~---~l~~l~--~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 456 (577)
...+ ..+|+|+.|+|+.+.+ ..+. .+..+. ..+|+|+.|++.+| .+++.+...+.. .
T Consensus 210 -l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~-~i~~~~~~~la~-a----------- 275 (362)
T 2ra8_A 210 -VEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDA-EEQNVVVEMFLE-S----------- 275 (362)
T ss_dssp -HHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESC-TTHHHHHHHHHH-C-----------
T ss_pred -HHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCC-CCchHHHHHHHh-C-----------
Confidence 2333 3789999999853211 0111 111111 23677777777766 454444333221 0
Q ss_pred cccccccccccCCCceEEEccCCCCCHHHHHHHH---HhCCCccEEecCCCCCCChhhHHHHHhhCCCCcEEEecCCC
Q 046157 457 RAVFDLGIDLELPKLEVLQASGSALNDHALKMIA---NTCSRILHLDLDNCLNVTTSGVKEVVEHCRTLREINLRWCD 531 (577)
Q Consensus 457 ~~l~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~---~~~~~L~~L~l~~c~~l~~~~l~~~~~~~~~L~~L~l~~c~ 531 (577)
..+|+|++|+++.|.+++.+...+. +.+++|+.|++++| .+++.++..+...+ ..++++++..
T Consensus 276 ---------~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n-~i~d~~~~~l~~al--g~~~~~~~~~ 341 (362)
T 2ra8_A 276 ---------DILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYN-YLSDEMKKELQKSL--PMKIDVSDSQ 341 (362)
T ss_dssp ---------SSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSB-BCCHHHHHHHHHHC--CSEEECCSBC
T ss_pred ---------ccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCC-cCCHHHHHHHHHHc--CCEEEecCCc
Confidence 1346777777777788888776665 35789999999887 48988888776544 4667777754
No 99
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.05 E-value=6.5e-11 Score=108.65 Aligned_cols=177 Identities=13% Similarity=0.073 Sum_probs=124.2
Q ss_pred CCCCeEEeeeccCCCCcccccccCCCCccEEEcCCCCCCCHHHHHHHHhhCCCccEEecCCCCCCCHHHHHHHHhhCCCC
Q 046157 369 PLLSEIKMETTNLGLDDFTTPLVINPQVKSLHLARNGNLSDESLKKLAILCPNLEVIDLSHCLGITEEGIGEILKSCCEI 448 (577)
Q Consensus 369 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L 448 (577)
+++++|+++++.+.... ...+..+++|++|+++++. ++... ......+++|++|+++++ .++... ...+..+++|
T Consensus 37 ~~l~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~n~-l~~i~-~~~~~~l~~L~~L~l~~n-~l~~~~-~~~~~~l~~L 111 (270)
T 2o6q_A 37 ADTKKLDLQSNKLSSLP-SKAFHRLTKLRLLYLNDNK-LQTLP-AGIFKELKNLETLWVTDN-KLQALP-IGVFDQLVNL 111 (270)
T ss_dssp TTCSEEECCSSCCSCCC-TTSSSSCTTCCEEECCSSC-CSCCC-TTTTSSCTTCCEEECCSS-CCCCCC-TTTTTTCSSC
T ss_pred CCCCEEECcCCCCCeeC-HHHhcCCCCCCEEECCCCc-cCeeC-hhhhcCCCCCCEEECCCC-cCCcCC-HhHcccccCC
Confidence 56888888888765433 4467889999999999876 44211 112245799999999987 444322 1235678999
Q ss_pred cEEEccccccccccc--ccccCCCceEEEccCCCCCHHHHHHHHHhCCCccEEecCCCCCCChhhHHHHHhhCCCCcEEE
Q 046157 449 KCLEIKRCRAVFDLG--IDLELPKLEVLQASGSALNDHALKMIANTCSRILHLDLDNCLNVTTSGVKEVVEHCRTLREIN 526 (577)
Q Consensus 449 ~~L~l~~~~~l~~~~--~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~c~~l~~~~l~~~~~~~~~L~~L~ 526 (577)
+.|++++|. ++... ....+++|++|++++|.++...... ...+++|+.|++++|. ++.... ..+..+++|+.|+
T Consensus 112 ~~L~l~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~-~~~l~~L~~L~L~~n~-l~~~~~-~~~~~l~~L~~L~ 187 (270)
T 2o6q_A 112 AELRLDRNQ-LKSLPPRVFDSLTKLTYLSLGYNELQSLPKGV-FDKLTSLKELRLYNNQ-LKRVPE-GAFDKLTELKTLK 187 (270)
T ss_dssp CEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTT-TTTCTTCCEEECCSSC-CSCCCT-TTTTTCTTCCEEE
T ss_pred CEEECCCCc-cCeeCHHHhCcCcCCCEEECCCCcCCccCHhH-ccCCcccceeEecCCc-CcEeCh-hHhccCCCcCEEE
Confidence 999999987 44433 2457899999999999887543222 2357999999999974 654332 2246789999999
Q ss_pred ecCCCCCcHHHHHHHHHhCCCCceeccCCC
Q 046157 527 LRWCDEVNVDIVAWMVFSRPSLRKIIPPCG 556 (577)
Q Consensus 527 l~~c~~~~~~~~~~~~~~~~~L~~l~~~~~ 556 (577)
++++.-.. .....+..+++|+.|++.++
T Consensus 188 L~~N~l~~--~~~~~~~~l~~L~~L~l~~N 215 (270)
T 2o6q_A 188 LDNNQLKR--VPEGAFDSLEKLKMLQLQEN 215 (270)
T ss_dssp CCSSCCSC--CCTTTTTTCTTCCEEECCSS
T ss_pred CCCCcCCc--CCHHHhccccCCCEEEecCC
Confidence 99984332 11223457899999999864
No 100
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.04 E-value=2e-10 Score=105.39 Aligned_cols=132 Identities=14% Similarity=0.075 Sum_probs=69.3
Q ss_pred hCCCCCeEEeeeccCCCCcccccccCCCCccEEEcCCCCCCCHHHHHHHHhhCCCccEEecCCCCCCCHHHHHHHHhhCC
Q 046157 367 ECPLLSEIKMETTNLGLDDFTTPLVINPQVKSLHLARNGNLSDESLKKLAILCPNLEVIDLSHCLGITEEGIGEILKSCC 446 (577)
Q Consensus 367 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 446 (577)
.+++|++|++++|.+.... ...+..+++|+.|++++|. ++.... .....+++|++|++++| .++... ...+..++
T Consensus 83 ~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~L~~n~-l~~~~~-~~~~~l~~L~~L~L~~n-~l~~~~-~~~~~~l~ 157 (272)
T 3rfs_A 83 ELTNLTYLILTGNQLQSLP-NGVFDKLTNLKELVLVENQ-LQSLPD-GVFDKLTNLTYLNLAHN-QLQSLP-KGVFDKLT 157 (272)
T ss_dssp TCTTCCEEECTTSCCCCCC-TTTTTTCTTCCEEECTTSC-CCCCCT-TTTTTCTTCCEEECCSS-CCCCCC-TTTTTTCT
T ss_pred CCCCCCEEECCCCccCccC-hhHhcCCcCCCEEECCCCc-CCccCH-HHhccCCCCCEEECCCC-ccCccC-HHHhccCc
Confidence 4555555555555443221 2234555666666666554 322111 11223566666666665 333211 11235566
Q ss_pred CCcEEEcccccccccccc--cccCCCceEEEccCCCCCHHHHHHHHHhCCCccEEecCCCC
Q 046157 447 EIKCLEIKRCRAVFDLGI--DLELPKLEVLQASGSALNDHALKMIANTCSRILHLDLDNCL 505 (577)
Q Consensus 447 ~L~~L~l~~~~~l~~~~~--~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~c~ 505 (577)
+|+.|++++|. ++.... ...+++|+.|++++|.++..... ....+++|+.|++++|+
T Consensus 158 ~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~~l~~L~~L~l~~N~ 216 (272)
T 3rfs_A 158 NLTELDLSYNQ-LQSLPEGVFDKLTQLKDLRLYQNQLKSVPDG-VFDRLTSLQYIWLHDNP 216 (272)
T ss_dssp TCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCSCCCTT-TTTTCTTCCEEECCSSC
T ss_pred cCCEEECCCCC-cCccCHHHhcCCccCCEEECCCCcCCccCHH-HHhCCcCCCEEEccCCC
Confidence 77777777775 333322 23567777777777766543221 12346778888887765
No 101
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.04 E-value=2e-11 Score=109.89 Aligned_cols=10 Identities=20% Similarity=0.172 Sum_probs=4.7
Q ss_pred CCcEEEecCC
Q 046157 292 PLKKLVLSHC 301 (577)
Q Consensus 292 ~L~~L~l~~~ 301 (577)
+++.|+++++
T Consensus 32 ~l~~L~l~~n 41 (239)
T 2xwt_C 32 STQTLKLIET 41 (239)
T ss_dssp TCCEEEEESC
T ss_pred cccEEEEeCC
Confidence 4445554443
No 102
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.02 E-value=2e-11 Score=109.93 Aligned_cols=106 Identities=8% Similarity=0.021 Sum_probs=50.1
Q ss_pred hCCCCc---EEEcccccccccccc--cccCCCce-EEEccCCCCCHHHHHHHHHhCCCccEEecCCCCCCChhhHHHHHh
Q 046157 444 SCCEIK---CLEIKRCRAVFDLGI--DLELPKLE-VLQASGSALNDHALKMIANTCSRILHLDLDNCLNVTTSGVKEVVE 517 (577)
Q Consensus 444 ~~~~L~---~L~l~~~~~l~~~~~--~~~~~~L~-~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~c~~l~~~~l~~~~~ 517 (577)
.+++|+ .|++++|+.++.... ...+++|+ .|++++|.++....... ..++|+.|++++|+.++.... ..+.
T Consensus 125 ~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~--~~~~L~~L~L~~n~~l~~i~~-~~~~ 201 (239)
T 2xwt_C 125 KVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAF--NGTKLDAVYLNKNKYLTVIDK-DAFG 201 (239)
T ss_dssp TCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTT--TTCEEEEEECTTCTTCCEECT-TTTT
T ss_pred cccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhc--CCCCCCEEEcCCCCCcccCCH-HHhh
Confidence 444444 666666533443331 23456666 66666665542211111 125666666666543443221 1234
Q ss_pred hC-CCCcEEEecCCCCCcHHHHHHHHHhCCCCceeccCCCC
Q 046157 518 HC-RTLREINLRWCDEVNVDIVAWMVFSRPSLRKIIPPCGF 557 (577)
Q Consensus 518 ~~-~~L~~L~l~~c~~~~~~~~~~~~~~~~~L~~l~~~~~~ 557 (577)
++ ++|+.|+++++.-.. +.. ..++.|+.|.+..++
T Consensus 202 ~l~~~L~~L~l~~N~l~~---l~~--~~~~~L~~L~l~~~~ 237 (239)
T 2xwt_C 202 GVYSGPSLLDVSQTSVTA---LPS--KGLEHLKELIARNTW 237 (239)
T ss_dssp TCSBCCSEEECTTCCCCC---CCC--TTCTTCSEEECTTC-
T ss_pred ccccCCcEEECCCCcccc---CCh--hHhccCceeeccCcc
Confidence 45 666666666653221 000 135666666665544
No 103
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.00 E-value=4.3e-10 Score=92.70 Aligned_cols=132 Identities=17% Similarity=0.233 Sum_probs=87.2
Q ss_pred CCCccEEecCCCCCCCHHHHHHHHhhCCCCcEEEcccccccccccccccCCCceEEEccCCCCCHHHHHHHHHhCCCccE
Q 046157 419 CPNLEVIDLSHCLGITEEGIGEILKSCCEIKCLEIKRCRAVFDLGIDLELPKLEVLQASGSALNDHALKMIANTCSRILH 498 (577)
Q Consensus 419 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~ 498 (577)
.++|+.|++++| .+++..+...+..+++|+.|++++|. ++.......+++|+.|++++|.++.. +......+++|++
T Consensus 16 ~~~l~~L~l~~n-~l~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~l~~L~~L~Ls~n~i~~~-~~~~~~~l~~L~~ 92 (149)
T 2je0_A 16 PSDVKELVLDNS-RSNEGKLEGLTDEFEELEFLSTINVG-LTSIANLPKLNKLKKLELSDNRVSGG-LEVLAEKCPNLTH 92 (149)
T ss_dssp GGGCSEEECTTC-BCBTTBCCSCCTTCTTCCEEECTTSC-CCCCTTCCCCTTCCEEECCSSCCCSC-THHHHHHCTTCCE
T ss_pred CccCeEEEccCC-cCChhHHHHHHhhcCCCcEEECcCCC-CCCchhhhcCCCCCEEECCCCcccch-HHHHhhhCCCCCE
Confidence 356777777776 34422223334667788888888775 55444455678888888888888763 2333445789999
Q ss_pred EecCCCCCCChhhHHHHHhhCCCCcEEEecCCCCCcHH-HHHHHHHhCCCCceeccC
Q 046157 499 LDLDNCLNVTTSGVKEVVEHCRTLREINLRWCDEVNVD-IVAWMVFSRPSLRKIIPP 554 (577)
Q Consensus 499 L~l~~c~~l~~~~l~~~~~~~~~L~~L~l~~c~~~~~~-~~~~~~~~~~~L~~l~~~ 554 (577)
|++++|. ++.......+..+++|++|++++|+-.... .....+..+|+|+.|+++
T Consensus 93 L~ls~N~-i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 93 LNLSGNK-IKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp EECTTSC-CCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred EECCCCc-CCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 9998875 765433344578899999999988433211 223466778999988875
No 104
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=98.99 E-value=7.7e-10 Score=91.20 Aligned_cols=83 Identities=11% Similarity=0.135 Sum_probs=41.9
Q ss_pred CCCCeEEeeeccCCCCcccccccCCCCccEEEcCCCCCCCHHHHHHHHhhCCCccEEecCCCCCCCHHHHHHHHhhCCCC
Q 046157 369 PLLSEIKMETTNLGLDDFTTPLVINPQVKSLHLARNGNLSDESLKKLAILCPNLEVIDLSHCLGITEEGIGEILKSCCEI 448 (577)
Q Consensus 369 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L 448 (577)
++|+.|++++|.+........+..+++|+.|++++|. ++.. .....+++|++|++++| .++.. +...+..+++|
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~-l~~~---~~~~~l~~L~~L~Ls~n-~i~~~-~~~~~~~l~~L 90 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVG-LTSI---ANLPKLNKLKKLELSDN-RVSGG-LEVLAEKCPNL 90 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSC-CCCC---TTCCCCTTCCEEECCSS-CCCSC-THHHHHHCTTC
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCC-CCCc---hhhhcCCCCCEEECCCC-cccch-HHHHhhhCCCC
Confidence 4555566655554422223344556666666666654 3332 12223556666666665 33321 23334455566
Q ss_pred cEEEccccc
Q 046157 449 KCLEIKRCR 457 (577)
Q Consensus 449 ~~L~l~~~~ 457 (577)
+.|++++|.
T Consensus 91 ~~L~ls~N~ 99 (149)
T 2je0_A 91 THLNLSGNK 99 (149)
T ss_dssp CEEECTTSC
T ss_pred CEEECCCCc
Confidence 666655554
No 105
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=98.98 E-value=2.2e-10 Score=106.00 Aligned_cols=201 Identities=20% Similarity=0.148 Sum_probs=137.0
Q ss_pred hcCCCcCeeecccccccChHHHHHHHhcCCCCCEEeecCCCCCChHHHHHHHhhCCCCCeEEeeeccCCCCcccccccCC
Q 046157 314 SKYQSLEHLNLEAANFLEDESMIDLSKFLTSLNFIDLGFCAKLTNSTFFTILRECPLLSEIKMETTNLGLDDFTTPLVIN 393 (577)
Q Consensus 314 ~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 393 (577)
..+++++++++.++. ++... ....++++.|+++++. ++.... .....+++|+.|++++|.+.... ....+
T Consensus 7 ~~l~~l~~l~~~~~~-l~~ip----~~~~~~l~~L~L~~N~-l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~---~~~~l 76 (290)
T 1p9a_G 7 SKVASHLEVNCDKRN-LTALP----PDLPKDTTILHLSENL-LYTFSL-ATLMPYTRLTQLNLDRAELTKLQ---VDGTL 76 (290)
T ss_dssp ECSTTCCEEECTTSC-CSSCC----SCCCTTCCEEECTTSC-CSEEEG-GGGTTCTTCCEEECTTSCCCEEE---CCSCC
T ss_pred cccCCccEEECCCCC-CCcCC----CCCCCCCCEEEcCCCc-CCccCH-HHhhcCCCCCEEECCCCccCccc---CCCCC
Confidence 346789999998876 33211 1124689999999865 332211 12346899999999999876532 23788
Q ss_pred CCccEEEcCCCCCCCHHHHHHHHhhCCCccEEecCCCCCCCHHHHHHHHhhCCCCcEEEccccccccccc--ccccCCCc
Q 046157 394 PQVKSLHLARNGNLSDESLKKLAILCPNLEVIDLSHCLGITEEGIGEILKSCCEIKCLEIKRCRAVFDLG--IDLELPKL 471 (577)
Q Consensus 394 ~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~--~~~~~~~L 471 (577)
++|+.|+++++. +.. +......+++|+.|+++++ .++... ...+..+++|+.|++++|. ++... ....+++|
T Consensus 77 ~~L~~L~Ls~N~-l~~--l~~~~~~l~~L~~L~l~~N-~l~~l~-~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L 150 (290)
T 1p9a_G 77 PVLGTLDLSHNQ-LQS--LPLLGQTLPALTVLDVSFN-RLTSLP-LGALRGLGELQELYLKGNE-LKTLPPGLLTPTPKL 150 (290)
T ss_dssp TTCCEEECCSSC-CSS--CCCCTTTCTTCCEEECCSS-CCCCCC-SSTTTTCTTCCEEECTTSC-CCCCCTTTTTTCTTC
T ss_pred CcCCEEECCCCc-CCc--CchhhccCCCCCEEECCCC-cCcccC-HHHHcCCCCCCEEECCCCC-CCccChhhcccccCC
Confidence 999999999876 442 1122346789999999997 454321 1235678999999999997 44443 23478999
Q ss_pred eEEEccCCCCCHHHHHHHHHhCCCccEEecCCCCCCChhhHHHHHhhCCCCcEEEecCCCCCc
Q 046157 472 EVLQASGSALNDHALKMIANTCSRILHLDLDNCLNVTTSGVKEVVEHCRTLREINLRWCDEVN 534 (577)
Q Consensus 472 ~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~c~~l~~~~l~~~~~~~~~L~~L~l~~c~~~~ 534 (577)
+.|++++|.++.... .....+++|+.|+++++. ++. +...+...++|+.++++++|...
T Consensus 151 ~~L~L~~N~l~~l~~-~~~~~l~~L~~L~L~~N~-l~~--ip~~~~~~~~L~~l~L~~Np~~C 209 (290)
T 1p9a_G 151 EKLSLANNNLTELPA-GLLNGLENLDTLLLQENS-LYT--IPKGFFGSHLLPFAFLHGNPWLC 209 (290)
T ss_dssp CEEECTTSCCSCCCT-TTTTTCTTCCEEECCSSC-CCC--CCTTTTTTCCCSEEECCSCCBCC
T ss_pred CEEECCCCcCCccCH-HHhcCcCCCCEEECCCCc-CCc--cChhhcccccCCeEEeCCCCccC
Confidence 999999998874322 122357899999999874 653 22223456789999999876554
No 106
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=98.98 E-value=1.1e-10 Score=108.11 Aligned_cols=110 Identities=17% Similarity=0.137 Sum_probs=63.9
Q ss_pred hCCCCCeEEeeeccCCCCcccccccCCCCccEEEcCCCCCCCHHHHHHHHhhCCCccEEecCCCCCCCHHHHHHHHhhCC
Q 046157 367 ECPLLSEIKMETTNLGLDDFTTPLVINPQVKSLHLARNGNLSDESLKKLAILCPNLEVIDLSHCLGITEEGIGEILKSCC 446 (577)
Q Consensus 367 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 446 (577)
.+++|+.|++++|.+.... ...+..+++|+.|++++|. ++.... .....+++|+.|+++++ .++... ...+..++
T Consensus 98 ~l~~L~~L~l~~N~l~~l~-~~~~~~l~~L~~L~L~~N~-l~~~~~-~~~~~l~~L~~L~L~~N-~l~~l~-~~~~~~l~ 172 (290)
T 1p9a_G 98 TLPALTVLDVSFNRLTSLP-LGALRGLGELQELYLKGNE-LKTLPP-GLLTPTPKLEKLSLANN-NLTELP-AGLLNGLE 172 (290)
T ss_dssp TCTTCCEEECCSSCCCCCC-SSTTTTCTTCCEEECTTSC-CCCCCT-TTTTTCTTCCEEECTTS-CCSCCC-TTTTTTCT
T ss_pred cCCCCCEEECCCCcCcccC-HHHHcCCCCCCEEECCCCC-CCccCh-hhcccccCCCEEECCCC-cCCccC-HHHhcCcC
Confidence 4566666666666554332 3445666777777777664 332111 11234567777777776 343211 12245677
Q ss_pred CCcEEEccccccccccc-ccccCCCceEEEccCCCCC
Q 046157 447 EIKCLEIKRCRAVFDLG-IDLELPKLEVLQASGSALN 482 (577)
Q Consensus 447 ~L~~L~l~~~~~l~~~~-~~~~~~~L~~L~l~~~~i~ 482 (577)
+|+.|++++|. ++... ..+..++|+.+++++|.+.
T Consensus 173 ~L~~L~L~~N~-l~~ip~~~~~~~~L~~l~L~~Np~~ 208 (290)
T 1p9a_G 173 NLDTLLLQENS-LYTIPKGFFGSHLLPFAFLHGNPWL 208 (290)
T ss_dssp TCCEEECCSSC-CCCCCTTTTTTCCCSEEECCSCCBC
T ss_pred CCCEEECCCCc-CCccChhhcccccCCeEEeCCCCcc
Confidence 88888888876 33332 3445678888888887554
No 107
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=98.95 E-value=5.9e-10 Score=101.48 Aligned_cols=143 Identities=16% Similarity=0.176 Sum_probs=76.6
Q ss_pred CCCCCEEeecCCCCCChHHHHHHHhhCCCCCeEEeeeccCCCCcccccccCCCCccEEEcCCCCCCCHHHHHHHHhhCCC
Q 046157 342 LTSLNFIDLGFCAKLTNSTFFTILRECPLLSEIKMETTNLGLDDFTTPLVINPQVKSLHLARNGNLSDESLKKLAILCPN 421 (577)
Q Consensus 342 ~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~ 421 (577)
+++|+.|+++++. ++... -...+++|+.|++++|.+.... .+..+++|+.|++++|. +++. ..+.. ++
T Consensus 40 l~~L~~L~l~~n~-i~~l~---~l~~l~~L~~L~L~~N~i~~~~---~l~~l~~L~~L~L~~N~-l~~l--~~~~~--~~ 107 (263)
T 1xeu_A 40 LSGVQNFNGDNSN-IQSLA---GMQFFTNLKELHLSHNQISDLS---PLKDLTKLEELSVNRNR-LKNL--NGIPS--AC 107 (263)
T ss_dssp HTTCSEEECTTSC-CCCCT---TGGGCTTCCEEECCSSCCCCCG---GGTTCSSCCEEECCSSC-CSCC--TTCCC--SS
T ss_pred cCcCcEEECcCCC-cccch---HHhhCCCCCEEECCCCccCCCh---hhccCCCCCEEECCCCc-cCCc--Ccccc--Cc
Confidence 5678888887754 32211 1345777777777777665432 26667777777777665 3321 11111 56
Q ss_pred ccEEecCCCCCCCHHHHHHHHhhCCCCcEEEcccccccccccccccCCCceEEEccCCCCCHHHHHHHHHhCCCccEEec
Q 046157 422 LEVIDLSHCLGITEEGIGEILKSCCEIKCLEIKRCRAVFDLGIDLELPKLEVLQASGSALNDHALKMIANTCSRILHLDL 501 (577)
Q Consensus 422 L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l 501 (577)
|+.|++++| .+++. . .+..+++|+.|++++|. ++.......+++|+.|++++|.+++. .....+++|+.|++
T Consensus 108 L~~L~L~~N-~l~~~--~-~l~~l~~L~~L~Ls~N~-i~~~~~l~~l~~L~~L~L~~N~i~~~---~~l~~l~~L~~L~l 179 (263)
T 1xeu_A 108 LSRLFLDNN-ELRDT--D-SLIHLKNLEILSIRNNK-LKSIVMLGFLSKLEVLDLHGNEITNT---GGLTRLKKVNWIDL 179 (263)
T ss_dssp CCEEECCSS-CCSBS--G-GGTTCTTCCEEECTTSC-CCBCGGGGGCTTCCEEECTTSCCCBC---TTSTTCCCCCEEEE
T ss_pred ccEEEccCC-ccCCC--h-hhcCcccccEEECCCCc-CCCChHHccCCCCCEEECCCCcCcch---HHhccCCCCCEEeC
Confidence 666666665 34332 1 14455666666666665 44333334455555555555555443 11123455555555
Q ss_pred CCC
Q 046157 502 DNC 504 (577)
Q Consensus 502 ~~c 504 (577)
+++
T Consensus 180 ~~N 182 (263)
T 1xeu_A 180 TGQ 182 (263)
T ss_dssp EEE
T ss_pred CCC
Confidence 554
No 108
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=98.91 E-value=5.6e-10 Score=101.14 Aligned_cols=85 Identities=14% Similarity=0.119 Sum_probs=38.7
Q ss_pred hhCCCCcEEEccccccccccc--ccccCCCceEEEccCCCCCHHHHHHHHHhCCCccEEecCCCCCCChhhHHHHHhhCC
Q 046157 443 KSCCEIKCLEIKRCRAVFDLG--IDLELPKLEVLQASGSALNDHALKMIANTCSRILHLDLDNCLNVTTSGVKEVVEHCR 520 (577)
Q Consensus 443 ~~~~~L~~L~l~~~~~l~~~~--~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~c~~l~~~~l~~~~~~~~ 520 (577)
..+++|+.|++++|. ++... ....+++|+.|++++|.++......+ ..+++|+.|+++++. ++.... ..+..++
T Consensus 104 ~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~-~~l~~L~~L~L~~N~-l~~~~~-~~~~~l~ 179 (251)
T 3m19_A 104 DHLTQLDKLYLGGNQ-LKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAF-DKLTNLQTLSLSTNQ-LQSVPH-GAFDRLG 179 (251)
T ss_dssp TTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTT-TTCTTCCEEECCSSC-CSCCCT-TTTTTCT
T ss_pred cccCCCCEEEcCCCc-CCCcChhHhccCCcccEEECcCCcCCccCHHHc-CcCcCCCEEECCCCc-CCccCH-HHHhCCC
Confidence 344555555555553 22222 12245555555555555443221111 134566666666542 432211 1234556
Q ss_pred CCcEEEecCCC
Q 046157 521 TLREINLRWCD 531 (577)
Q Consensus 521 ~L~~L~l~~c~ 531 (577)
+|+.|++++++
T Consensus 180 ~L~~L~l~~N~ 190 (251)
T 3m19_A 180 KLQTITLFGNQ 190 (251)
T ss_dssp TCCEEECCSCC
T ss_pred CCCEEEeeCCc
Confidence 66666666654
No 109
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=98.88 E-value=1.1e-09 Score=92.30 Aligned_cols=130 Identities=13% Similarity=0.079 Sum_probs=59.1
Q ss_pred CCCCeEEeeeccCCCCcccccccCCCCccEEEcCCCCCCCHHHHHHHHhhCCCccEEecCCCCCCCHHHHHHHHhhCCCC
Q 046157 369 PLLSEIKMETTNLGLDDFTTPLVINPQVKSLHLARNGNLSDESLKKLAILCPNLEVIDLSHCLGITEEGIGEILKSCCEI 448 (577)
Q Consensus 369 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L 448 (577)
++|++|++++|.+........+..+++|+.|++++|. ++.. .....+++|+.|++++| .++.. +...+..+++|
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~-l~~~---~~~~~l~~L~~L~Ls~N-~l~~~-~~~~~~~l~~L 97 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVG-LISV---SNLPKLPKLKKLELSEN-RIFGG-LDMLAEKLPNL 97 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSC-CCCC---SSCCCCSSCCEEEEESC-CCCSC-CCHHHHHCTTC
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCC-CCCh---hhhccCCCCCEEECcCC-cCchH-HHHHHhhCCCC
Confidence 3444455544444322222233445555555555544 3322 11223455666666555 23321 22334456666
Q ss_pred cEEEcccccccccc---cccccCCCceEEEccCCCCCHHHH--HHHHHhCCCccEEecCCCC
Q 046157 449 KCLEIKRCRAVFDL---GIDLELPKLEVLQASGSALNDHAL--KMIANTCSRILHLDLDNCL 505 (577)
Q Consensus 449 ~~L~l~~~~~l~~~---~~~~~~~~L~~L~l~~~~i~~~~~--~~l~~~~~~L~~L~l~~c~ 505 (577)
+.|++++|. ++.. .....+++|+.|++++|.++.... ......+++|+.|++++|.
T Consensus 98 ~~L~Ls~N~-l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~ 158 (168)
T 2ell_A 98 THLNLSGNK-LKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDRE 158 (168)
T ss_dssp CEEECBSSS-CCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETT
T ss_pred CEEeccCCc-cCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCC
Confidence 666666664 3332 122345555555555555443221 1122345555666555543
No 110
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=98.86 E-value=9.1e-10 Score=92.86 Aligned_cols=132 Identities=23% Similarity=0.242 Sum_probs=79.7
Q ss_pred CCCCEEeecCCCCCChHHHHHHHhhCCCCCeEEeeeccCCCCcccccccCCCCccEEEcCCCCCCCHHHHHHHHhhCCCc
Q 046157 343 TSLNFIDLGFCAKLTNSTFFTILRECPLLSEIKMETTNLGLDDFTTPLVINPQVKSLHLARNGNLSDESLKKLAILCPNL 422 (577)
Q Consensus 343 ~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L 422 (577)
++|+.|+++++. +++..+......+++|+.|++.+|.+... ..+..+++|+.|++++|. +... +......+++|
T Consensus 24 ~~L~~L~l~~n~-l~~~~i~~~~~~l~~L~~L~l~~n~l~~~---~~~~~l~~L~~L~Ls~N~-l~~~-~~~~~~~l~~L 97 (168)
T 2ell_A 24 AAVRELVLDNCK-SNDGKIEGLTAEFVNLEFLSLINVGLISV---SNLPKLPKLKKLELSENR-IFGG-LDMLAEKLPNL 97 (168)
T ss_dssp TSCSEEECCSCB-CBTTBCSSCCGGGGGCCEEEEESSCCCCC---SSCCCCSSCCEEEEESCC-CCSC-CCHHHHHCTTC
T ss_pred ccCCEEECCCCC-CChhhHHHHHHhCCCCCEEeCcCCCCCCh---hhhccCCCCCEEECcCCc-CchH-HHHHHhhCCCC
Confidence 455555555543 22111111223566777777777765443 556677788888887766 3332 22334457888
Q ss_pred cEEecCCCCCCCHHHHHHHHhhCCCCcEEEccccccccccc-----ccccCCCceEEEccCCCCC
Q 046157 423 EVIDLSHCLGITEEGIGEILKSCCEIKCLEIKRCRAVFDLG-----IDLELPKLEVLQASGSALN 482 (577)
Q Consensus 423 ~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~-----~~~~~~~L~~L~l~~~~i~ 482 (577)
+.|++++| .+++......+..+++|+.|++++|+ +.... ....+|+|+.|++++|.+.
T Consensus 98 ~~L~Ls~N-~l~~~~~~~~l~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~l~~L~~L~l~~n~~~ 160 (168)
T 2ell_A 98 THLNLSGN-KLKDISTLEPLKKLECLKSLDLFNCE-VTNLNDYRESVFKLLPQLTYLDGYDREDQ 160 (168)
T ss_dssp CEEECBSS-SCCSSGGGGGGSSCSCCCEEECCSSG-GGTSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred CEEeccCC-ccCcchhHHHHhcCCCCCEEEeeCCc-CcchHHHHHHHHHhCccCcEecCCCCChh
Confidence 88888887 45543221335677888888888887 33332 3456888888888887654
No 111
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=98.82 E-value=9.8e-09 Score=93.35 Aligned_cols=103 Identities=17% Similarity=0.226 Sum_probs=47.9
Q ss_pred hCCCCCeEEeeeccCCCCcccccccCCCCccEEEcCCCCCCCHHHHHHHHhhCCCccEEecCCCCCCCHHHHHHHHhhCC
Q 046157 367 ECPLLSEIKMETTNLGLDDFTTPLVINPQVKSLHLARNGNLSDESLKKLAILCPNLEVIDLSHCLGITEEGIGEILKSCC 446 (577)
Q Consensus 367 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 446 (577)
.+++|+.|++++|.+.... .+.. ++|+.|++++|. +++. .. ...+++|+.|+++++ .+++.. .+..++
T Consensus 83 ~l~~L~~L~L~~N~l~~l~---~~~~-~~L~~L~L~~N~-l~~~--~~-l~~l~~L~~L~Ls~N-~i~~~~---~l~~l~ 150 (263)
T 1xeu_A 83 DLTKLEELSVNRNRLKNLN---GIPS-ACLSRLFLDNNE-LRDT--DS-LIHLKNLEILSIRNN-KLKSIV---MLGFLS 150 (263)
T ss_dssp TCSSCCEEECCSSCCSCCT---TCCC-SSCCEEECCSSC-CSBS--GG-GTTCTTCCEEECTTS-CCCBCG---GGGGCT
T ss_pred cCCCCCEEECCCCccCCcC---cccc-CcccEEEccCCc-cCCC--hh-hcCcccccEEECCCC-cCCCCh---HHccCC
Confidence 3444555555544443211 1111 555555555543 3321 11 223455556665555 333321 244555
Q ss_pred CCcEEEcccccccccccccccCCCceEEEccCCCCC
Q 046157 447 EIKCLEIKRCRAVFDLGIDLELPKLEVLQASGSALN 482 (577)
Q Consensus 447 ~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~i~ 482 (577)
+|+.|++++|. +........+++|+.|++++|.++
T Consensus 151 ~L~~L~L~~N~-i~~~~~l~~l~~L~~L~l~~N~~~ 185 (263)
T 1xeu_A 151 KLEVLDLHGNE-ITNTGGLTRLKKVNWIDLTGQKCV 185 (263)
T ss_dssp TCCEEECTTSC-CCBCTTSTTCCCCCEEEEEEEEEE
T ss_pred CCCEEECCCCc-CcchHHhccCCCCCEEeCCCCccc
Confidence 66666666554 333333345556666666665443
No 112
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.82 E-value=9.3e-08 Score=81.48 Aligned_cols=61 Identities=11% Similarity=0.233 Sum_probs=34.7
Q ss_pred CCceEEEccCCCCCHHHHHHHHH---hCCCccEEec--CCCCCCChhhHHHHH---hhCCCCcEEEecCC
Q 046157 469 PKLEVLQASGSALNDHALKMIAN---TCSRILHLDL--DNCLNVTTSGVKEVV---EHCRTLREINLRWC 530 (577)
Q Consensus 469 ~~L~~L~l~~~~i~~~~~~~l~~---~~~~L~~L~l--~~c~~l~~~~l~~~~---~~~~~L~~L~l~~c 530 (577)
++|++|++++|.+++.+...+++ ..++|++|++ ++| .+++.+...+. ..++.|++|++++|
T Consensus 93 ~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N-~i~~~g~~~l~~~L~~n~~L~~L~L~~n 161 (185)
T 1io0_A 93 NTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQ-PLGNNVEMEIANMLEKNTTLLKFGYHFT 161 (185)
T ss_dssp SSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSS-CCCHHHHHHHHHHHHHCSSCCEEECCCS
T ss_pred CCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCC-CCCHHHHHHHHHHHHhCCCcCEEeccCC
Confidence 44555555555566666555544 2346677777 443 46666644333 44566777776665
No 113
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=98.78 E-value=4.1e-09 Score=95.41 Aligned_cols=132 Identities=14% Similarity=0.104 Sum_probs=66.7
Q ss_pred hCCCCCeEEeeeccCCCCcccccccCCCCccEEEcCCCCCCCHHHHHHHHhhCCCccEEecCCCCCCCHHHHHHHHhhCC
Q 046157 367 ECPLLSEIKMETTNLGLDDFTTPLVINPQVKSLHLARNGNLSDESLKKLAILCPNLEVIDLSHCLGITEEGIGEILKSCC 446 (577)
Q Consensus 367 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 446 (577)
.+++|++|++++|.+.... ...+..+++|+.|+++++. ++.... .....+++|++|+++++ .++... ...+..++
T Consensus 57 ~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~L~~n~-l~~~~~-~~~~~l~~L~~L~L~~N-~l~~~~-~~~~~~l~ 131 (251)
T 3m19_A 57 GLTKLTWLNLDYNQLQTLS-AGVFDDLTELGTLGLANNQ-LASLPL-GVFDHLTQLDKLYLGGN-QLKSLP-SGVFDRLT 131 (251)
T ss_dssp TCTTCCEEECTTSCCCCCC-TTTTTTCTTCCEEECTTSC-CCCCCT-TTTTTCTTCCEEECCSS-CCCCCC-TTTTTTCT
T ss_pred CcccCCEEECCCCcCCccC-HhHhccCCcCCEEECCCCc-ccccCh-hHhcccCCCCEEEcCCC-cCCCcC-hhHhccCC
Confidence 3455555555555443322 2334555666666666544 322111 11123566666666665 333211 11234566
Q ss_pred CCcEEEccccccccccc--ccccCCCceEEEccCCCCCHHHHHHHHHhCCCccEEecCCCC
Q 046157 447 EIKCLEIKRCRAVFDLG--IDLELPKLEVLQASGSALNDHALKMIANTCSRILHLDLDNCL 505 (577)
Q Consensus 447 ~L~~L~l~~~~~l~~~~--~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~c~ 505 (577)
+|+.|++++|. ++... ....+++|+.|++++|.++......+ ..+++|+.|++++++
T Consensus 132 ~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~-~~l~~L~~L~l~~N~ 190 (251)
T 3m19_A 132 KLKELRLNTNQ-LQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAF-DRLGKLQTITLFGNQ 190 (251)
T ss_dssp TCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTT-TTCTTCCEEECCSCC
T ss_pred cccEEECcCCc-CCccCHHHcCcCcCCCEEECCCCcCCccCHHHH-hCCCCCCEEEeeCCc
Confidence 67777776665 33333 23356677777777766654322112 245677777777754
No 114
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.75 E-value=1.9e-07 Score=79.49 Aligned_cols=129 Identities=16% Similarity=0.206 Sum_probs=90.1
Q ss_pred HHHHHHhhCCCccEEecCCCCCCCHHHHHHHHhhCCCCcEEEcccccccccccccccCCCceEEEccCCCCCHHHHHHHH
Q 046157 411 SLKKLAILCPNLEVIDLSHCLGITEEGIGEILKSCCEIKCLEIKRCRAVFDLGIDLELPKLEVLQASGSALNDHALKMIA 490 (577)
Q Consensus 411 ~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~ 490 (577)
.+.......++|++|++++|..+++.+...+...+. ..++|++|++++|.+++++...++
T Consensus 27 ~l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~--------------------~~~~L~~L~Ls~n~i~~~g~~~l~ 86 (185)
T 1io0_A 27 TLKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALK--------------------TNTYVKKFSIVGTRSNDPVAFALA 86 (185)
T ss_dssp HHHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHT--------------------TCCSCCEEECTTSCCCHHHHHHHH
T ss_pred HHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHH--------------------hCCCcCEEECcCCCCChHHHHHHH
Confidence 344444556777777777764577666655443321 234666777777779998876665
Q ss_pred H---hCCCccEEecCCCCCCChhhHHHHH---hhCCCCcEEEe--cCCCCCcHHH---HHHHHHhCCCCceeccCCCCCC
Q 046157 491 N---TCSRILHLDLDNCLNVTTSGVKEVV---EHCRTLREINL--RWCDEVNVDI---VAWMVFSRPSLRKIIPPCGFAP 559 (577)
Q Consensus 491 ~---~~~~L~~L~l~~c~~l~~~~l~~~~---~~~~~L~~L~l--~~c~~~~~~~---~~~~~~~~~~L~~l~~~~~~~~ 559 (577)
+ ..++|++|+|++| .+++.|...+. ..++.|++|++ +++ .+.+++ +.......+.|+.|+++.+ .+
T Consensus 87 ~~L~~n~~L~~L~L~~N-~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N-~i~~~g~~~l~~~L~~n~~L~~L~L~~n-~i 163 (185)
T 1io0_A 87 EMLKVNNTLKSLNVESN-FISGSGILALVEALQSNTSLIELRIDNQSQ-PLGNNVEMEIANMLEKNTTLLKFGYHFT-QQ 163 (185)
T ss_dssp HHHHHCSSCCEEECCSS-CCCHHHHHHHHHGGGGCSSCCEEECCCCSS-CCCHHHHHHHHHHHHHCSSCCEEECCCS-SH
T ss_pred HHHHhCCCcCEEECcCC-cCCHHHHHHHHHHHHhCCCceEEEecCCCC-CCCHHHHHHHHHHHHhCCCcCEEeccCC-CC
Confidence 4 4579999999997 59999987776 45678999999 555 677765 4456667899999999865 35
Q ss_pred Chh
Q 046157 560 TES 562 (577)
Q Consensus 560 ~~~ 562 (577)
++.
T Consensus 164 ~~~ 166 (185)
T 1io0_A 164 GPR 166 (185)
T ss_dssp HHH
T ss_pred ChH
Confidence 444
No 115
>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E
Probab=98.74 E-value=5.7e-09 Score=67.69 Aligned_cols=38 Identities=24% Similarity=0.204 Sum_probs=33.6
Q ss_pred CCCCCCChHHHHHHHHhcCCccchhhhHHhhHHHHhhhc
Q 046157 3 ENPLDLPPECWELIFNSLNDQSHFESLSLVSHRFLSITN 41 (577)
Q Consensus 3 ~~~~~LP~evl~~I~~~L~~~~~~~~~~~vcr~w~~~~~ 41 (577)
....+||+||+.+||+|| +.+|+.++++|||+|++++.
T Consensus 7 ~~~~~LP~eil~~I~~~L-~~~dl~~~~~Vck~w~~~~~ 44 (53)
T 1fs1_A 7 VSWDSLPDELLLGIFSCL-CLPELLKVSGVCKRWYRLAS 44 (53)
T ss_dssp --CCSSCHHHHHHHHTTS-CGGGHHHHHTTCHHHHHHHT
T ss_pred CCHHHCCHHHHHHHHHcC-CHHHHHHHHHHHHHHHHHhC
Confidence 345789999999999999 69999999999999999884
No 116
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=98.71 E-value=1.6e-08 Score=101.82 Aligned_cols=81 Identities=15% Similarity=0.068 Sum_probs=33.6
Q ss_pred CCCCcEEEcccccccccccccccCCCceEEEccCCCCCHHHH--HHHHHhCCCccEEecCCCCCCChhhHHHHHhhCCCC
Q 046157 445 CCEIKCLEIKRCRAVFDLGIDLELPKLEVLQASGSALNDHAL--KMIANTCSRILHLDLDNCLNVTTSGVKEVVEHCRTL 522 (577)
Q Consensus 445 ~~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~i~~~~~--~~l~~~~~~L~~L~l~~c~~l~~~~l~~~~~~~~~L 522 (577)
+++|+.|++++|. ++..+. .. ++|+.|++++|.++.... ..+....+.|+.|++++|. ++. +..-+..+++|
T Consensus 159 l~~L~~L~Ls~N~-L~~lp~-l~-~~L~~L~Ls~N~L~~lp~~~~~L~~~~~~L~~L~Ls~N~-l~~--lp~~l~~l~~L 232 (571)
T 3cvr_A 159 PTSLEVLSVRNNQ-LTFLPE-LP-ESLEALDVSTNLLESLPAVPVRNHHSEETEIFFRCRENR-ITH--IPENILSLDPT 232 (571)
T ss_dssp CTTCCEEECCSSC-CSCCCC-CC-TTCCEEECCSSCCSSCCCCC--------CCEEEECCSSC-CCC--CCGGGGGSCTT
T ss_pred CCCcCEEECCCCC-CCCcch-hh-CCCCEEECcCCCCCchhhHHHhhhcccccceEEecCCCc-cee--cCHHHhcCCCC
Confidence 4455555555554 222222 11 555555555555442110 0000111222666666542 442 11112335666
Q ss_pred cEEEecCCC
Q 046157 523 REINLRWCD 531 (577)
Q Consensus 523 ~~L~l~~c~ 531 (577)
+.|++++++
T Consensus 233 ~~L~L~~N~ 241 (571)
T 3cvr_A 233 CTIILEDNP 241 (571)
T ss_dssp EEEECCSSS
T ss_pred CEEEeeCCc
Confidence 666666653
No 117
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=98.67 E-value=9.1e-10 Score=105.14 Aligned_cols=227 Identities=11% Similarity=0.042 Sum_probs=123.4
Q ss_pred CCccEEEecCCCCCCcchhHHHHhhhhcCCCEEEcCCCCCChHHHHHHHhcCCCCcEEEecCCCCCCHHHHHHHHhcCCC
Q 046157 239 PNLVSISVNGIGIPTIDSCFKESFAYARGLCEIDLSNSFISDELLRLLGEACLPLKKLVLSHCYNFTLAGISFLLSKYQS 318 (577)
Q Consensus 239 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~ 318 (577)
+++++|++.++.+..+.. .+|.++++|++|+|++|.+...........++++.++....+..+.... ...+..+++
T Consensus 30 ~~l~~L~Ls~N~i~~i~~---~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~-~~~f~~l~~ 105 (350)
T 4ay9_X 30 RNAIELRFVLTKLRVIQK---GAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYIN-PEAFQNLPN 105 (350)
T ss_dssp TTCSEEEEESCCCSEECT---TSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEEC-TTSBCCCTT
T ss_pred CCCCEEEccCCcCCCcCH---HHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccC-chhhhhccc
Confidence 355666666555432221 2345666777777766654321111112234555554444333322110 111345678
Q ss_pred cCeeecccccccChHHHHHHHhcCCCCCEEeecCCCCCChHHHHHHHhhCCCCCeEEeeeccCCCCcccccccCCCCccE
Q 046157 319 LEHLNLEAANFLEDESMIDLSKFLTSLNFIDLGFCAKLTNSTFFTILRECPLLSEIKMETTNLGLDDFTTPLVINPQVKS 398 (577)
Q Consensus 319 L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~ 398 (577)
|++|+++++. +....... .....++..+++.++..+.......+......++.|++++|.+..- .......++|+.
T Consensus 106 L~~L~l~~n~-l~~~~~~~-~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i--~~~~f~~~~L~~ 181 (350)
T 4ay9_X 106 LQYLLISNTG-IKHLPDVH-KIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEI--HNSAFNGTQLDE 181 (350)
T ss_dssp CCEEEEEEEC-CSSCCCCT-TCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEE--CTTSSTTEEEEE
T ss_pred cccccccccc-cccCCchh-hcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCC--ChhhccccchhH
Confidence 8888888776 22211000 0113456677776654443222111122234678888888876532 333345568889
Q ss_pred EEcCCCCCCCHHHHHHHHhhCCCccEEecCCCCCCCHHHHHHHHhhCCCCcEEEcccccccccccccccCCCceEEEccC
Q 046157 399 LHLARNGNLSDESLKKLAILCPNLEVIDLSHCLGITEEGIGEILKSCCEIKCLEIKRCRAVFDLGIDLELPKLEVLQASG 478 (577)
Q Consensus 399 L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~ 478 (577)
+.+.++..++..... ....+++|+.|+++++ .++... ...+.+|+.|.+.++..++.......+++|+.+++.+
T Consensus 182 l~l~~~n~l~~i~~~-~f~~l~~L~~LdLs~N-~l~~lp----~~~~~~L~~L~~l~~~~l~~lP~l~~l~~L~~l~l~~ 255 (350)
T 4ay9_X 182 LNLSDNNNLEELPND-VFHGASGPVILDISRT-RIHSLP----SYGLENLKKLRARSTYNLKKLPTLEKLVALMEASLTY 255 (350)
T ss_dssp EECTTCTTCCCCCTT-TTTTEECCSEEECTTS-CCCCCC----SSSCTTCCEEECTTCTTCCCCCCTTTCCSCCEEECSC
T ss_pred HhhccCCcccCCCHH-HhccCcccchhhcCCC-CcCccC----hhhhccchHhhhccCCCcCcCCCchhCcChhhCcCCC
Confidence 988765545432211 2235688999999887 454321 1346678888888887777766556788888888876
Q ss_pred C
Q 046157 479 S 479 (577)
Q Consensus 479 ~ 479 (577)
+
T Consensus 256 ~ 256 (350)
T 4ay9_X 256 P 256 (350)
T ss_dssp H
T ss_pred C
Confidence 3
No 118
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=98.65 E-value=5.1e-08 Score=98.17 Aligned_cols=190 Identities=16% Similarity=0.168 Sum_probs=92.6
Q ss_pred CCccEEEecCCCCCCcchhHHHHhhhhcCCCEEEcCCCCCChHHHHHHHhcCCCCcEEEecCCCCCCHHHHHHHHhcCCC
Q 046157 239 PNLVSISVNGIGIPTIDSCFKESFAYARGLCEIDLSNSFISDELLRLLGEACLPLKKLVLSHCYNFTLAGISFLLSKYQS 318 (577)
Q Consensus 239 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~ 318 (577)
.+++.|++.++.+..++..+ +++|++|++++|.+.. +. ..+++|+.|+++++.... +.. + ..+
T Consensus 59 ~~L~~L~Ls~n~L~~lp~~l------~~~L~~L~Ls~N~l~~--ip---~~l~~L~~L~Ls~N~l~~---ip~-l--~~~ 121 (571)
T 3cvr_A 59 NQFSELQLNRLNLSSLPDNL------PPQITVLEITQNALIS--LP---ELPASLEYLDACDNRLST---LPE-L--PAS 121 (571)
T ss_dssp TTCSEEECCSSCCSCCCSCC------CTTCSEEECCSSCCSC--CC---CCCTTCCEEECCSSCCSC---CCC-C--CTT
T ss_pred CCccEEEeCCCCCCccCHhH------cCCCCEEECcCCCCcc--cc---cccCCCCEEEccCCCCCC---cch-h--hcC
Confidence 47777887777664433322 2567777777776552 11 234566666665543211 111 0 114
Q ss_pred cCeeecccccccChHHHHHHHhcCCCCCEEeecCCCCCChHHHHHHHhhCCCCCeEEeeeccCCCCcccccccCCCCccE
Q 046157 319 LEHLNLEAANFLEDESMIDLSKFLTSLNFIDLGFCAKLTNSTFFTILRECPLLSEIKMETTNLGLDDFTTPLVINPQVKS 398 (577)
Q Consensus 319 L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~ 398 (577)
|++|+++++. ++. +.. .+++|+.|++++|.+.... . .+++|+.
T Consensus 122 L~~L~Ls~N~-l~~-----------------------lp~--------~l~~L~~L~Ls~N~l~~lp--~---~l~~L~~ 164 (571)
T 3cvr_A 122 LKHLDVDNNQ-LTM-----------------------LPE--------LPALLEYINADNNQLTMLP--E---LPTSLEV 164 (571)
T ss_dssp CCEEECCSSC-CSC-----------------------CCC--------CCTTCCEEECCSSCCSCCC--C---CCTTCCE
T ss_pred CCEEECCCCc-CCC-----------------------CCC--------cCccccEEeCCCCccCcCC--C---cCCCcCE
Confidence 5555555444 221 000 2445555555555443211 1 3445555
Q ss_pred EEcCCCCCCCHHHHHHHHhhCCCccEEecCCCCCCCHHHH-H-HHHhhCCCCcEEEccccccccccc-ccccCCCceEEE
Q 046157 399 LHLARNGNLSDESLKKLAILCPNLEVIDLSHCLGITEEGI-G-EILKSCCEIKCLEIKRCRAVFDLG-IDLELPKLEVLQ 475 (577)
Q Consensus 399 L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~-~-~~~~~~~~L~~L~l~~~~~l~~~~-~~~~~~~L~~L~ 475 (577)
|++++|. ++. +..+ .++|+.|++++| .++.... . .+....+.|+.|++++|. ++... ....+++|+.|+
T Consensus 165 L~Ls~N~-L~~--lp~l---~~~L~~L~Ls~N-~L~~lp~~~~~L~~~~~~L~~L~Ls~N~-l~~lp~~l~~l~~L~~L~ 236 (571)
T 3cvr_A 165 LSVRNNQ-LTF--LPEL---PESLEALDVSTN-LLESLPAVPVRNHHSEETEIFFRCRENR-ITHIPENILSLDPTCTII 236 (571)
T ss_dssp EECCSSC-CSC--CCCC---CTTCCEEECCSS-CCSSCCCCC--------CCEEEECCSSC-CCCCCGGGGGSCTTEEEE
T ss_pred EECCCCC-CCC--cchh---hCCCCEEECcCC-CCCchhhHHHhhhcccccceEEecCCCc-ceecCHHHhcCCCCCEEE
Confidence 5555544 222 1111 156666666655 2321100 0 111222344888888876 44443 234588888888
Q ss_pred ccCCCCCHHHHHHHH
Q 046157 476 ASGSALNDHALKMIA 490 (577)
Q Consensus 476 l~~~~i~~~~~~~l~ 490 (577)
+++|.++......+.
T Consensus 237 L~~N~l~~~~p~~l~ 251 (571)
T 3cvr_A 237 LEDNPLSSRIRESLS 251 (571)
T ss_dssp CCSSSCCHHHHHHHH
T ss_pred eeCCcCCCcCHHHHH
Confidence 888888876555543
No 119
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.63 E-value=2.7e-08 Score=84.37 Aligned_cols=85 Identities=20% Similarity=0.278 Sum_probs=40.5
Q ss_pred ccCCCCccEEEcCCCCCCCHHHHHHHHhhCCCccEEecCCCCCCCHHHHHHHHhhCCCCcEEEccccccccccc--cccc
Q 046157 390 LVINPQVKSLHLARNGNLSDESLKKLAILCPNLEVIDLSHCLGITEEGIGEILKSCCEIKCLEIKRCRAVFDLG--IDLE 467 (577)
Q Consensus 390 ~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~--~~~~ 467 (577)
+..+++|+.|++++|. ++. +..+....++|+.|++++| .++.. ..+..+++|+.|++++|. ++... ....
T Consensus 15 ~~~~~~L~~L~l~~n~-l~~--i~~~~~~~~~L~~L~Ls~N-~l~~~---~~l~~l~~L~~L~Ls~N~-l~~~~~~~~~~ 86 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYK-IPV--IENLGATLDQFDAIDFSDN-EIRKL---DGFPLLRRLKTLLVNNNR-ICRIGEGLDQA 86 (176)
T ss_dssp EECTTSCEEEECTTSC-CCS--CCCGGGGTTCCSEEECCSS-CCCEE---CCCCCCSSCCEEECCSSC-CCEECSCHHHH
T ss_pred cCCcCCceEEEeeCCC-Cch--hHHhhhcCCCCCEEECCCC-CCCcc---cccccCCCCCEEECCCCc-ccccCcchhhc
Confidence 3455667777777654 332 1223333346666666665 34331 123445555555555554 22221 1124
Q ss_pred CCCceEEEccCCCCC
Q 046157 468 LPKLEVLQASGSALN 482 (577)
Q Consensus 468 ~~~L~~L~l~~~~i~ 482 (577)
+++|+.|++++|.++
T Consensus 87 l~~L~~L~L~~N~i~ 101 (176)
T 1a9n_A 87 LPDLTELILTNNSLV 101 (176)
T ss_dssp CTTCCEEECCSCCCC
T ss_pred CCCCCEEECCCCcCC
Confidence 445555555554443
No 120
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.63 E-value=1.3e-08 Score=86.33 Aligned_cols=81 Identities=11% Similarity=0.077 Sum_probs=33.6
Q ss_pred CCCCCeEEeeeccCCCCcccccccCC-CCccEEEcCCCCCCCHHHHHHHHhhCCCccEEecCCCCCCCHHHHHHHHhhCC
Q 046157 368 CPLLSEIKMETTNLGLDDFTTPLVIN-PQVKSLHLARNGNLSDESLKKLAILCPNLEVIDLSHCLGITEEGIGEILKSCC 446 (577)
Q Consensus 368 ~~~L~~L~l~~~~~~~~~~~~~~~~~-~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 446 (577)
+++|+.|++.+|.+... ..+... ++|+.|++++|. ++.. . ....+++|+.|++++| .++... ..++..++
T Consensus 18 ~~~L~~L~l~~n~l~~i---~~~~~~~~~L~~L~Ls~N~-l~~~--~-~l~~l~~L~~L~Ls~N-~l~~~~-~~~~~~l~ 88 (176)
T 1a9n_A 18 AVRDRELDLRGYKIPVI---ENLGATLDQFDAIDFSDNE-IRKL--D-GFPLLRRLKTLLVNNN-RICRIG-EGLDQALP 88 (176)
T ss_dssp TTSCEEEECTTSCCCSC---CCGGGGTTCCSEEECCSSC-CCEE--C-CCCCCSSCCEEECCSS-CCCEEC-SCHHHHCT
T ss_pred cCCceEEEeeCCCCchh---HHhhhcCCCCCEEECCCCC-CCcc--c-ccccCCCCCEEECCCC-cccccC-cchhhcCC
Confidence 44555555555544321 122222 255555555543 3321 1 1123445555555554 233211 11234455
Q ss_pred CCcEEEccccc
Q 046157 447 EIKCLEIKRCR 457 (577)
Q Consensus 447 ~L~~L~l~~~~ 457 (577)
+|+.|++++|.
T Consensus 89 ~L~~L~L~~N~ 99 (176)
T 1a9n_A 89 DLTELILTNNS 99 (176)
T ss_dssp TCCEEECCSCC
T ss_pred CCCEEECCCCc
Confidence 55555555554
No 121
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.58 E-value=2.8e-08 Score=93.91 Aligned_cols=254 Identities=16% Similarity=0.213 Sum_probs=115.8
Q ss_pred CccCcEEeccCCcccChhHHHHHHhcCCCCcEEEeccCCCCC--HH--HH--------------HHHHhc--------CC
Q 046157 186 LKRLKRINLSGNFFITDKSLMFLSSNLVLLREILIRDCDFIT--QS--GI--------------SFAMRN--------SP 239 (577)
Q Consensus 186 ~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~--~~--~~--------------~~~~~~--------~~ 239 (577)
+++++.|.+.+ .+....+..+...+++|+.|+++++.... .. .+ ...+.+ |+
T Consensus 24 ~~~l~~L~l~g--~i~~~~~~~l~~~l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~~I~~~aF~~~~~~~~~g~~ 101 (329)
T 3sb4_A 24 ANSITHLTLTG--KLNAEDFRHLRDEFPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMANFVPAYAFSNVVNGVTKGKQ 101 (329)
T ss_dssp HHHCSEEEEEE--EECHHHHHHHHHSCTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTTEECTTTTEEEETTEEEECT
T ss_pred hCceeEEEEec--cccHHHHHHHHHhhccCeEEecCcceeEEecCccccccccccccccccccCHHHhcccccccccccC
Confidence 34688888876 34556666665557888888887653220 00 00 012234 66
Q ss_pred CccEEEecCCCCCCcchhHHHHhhhhcCCCEEEcCCCCCChHHHHHHHhcCCCCcEEEecCCCCC-CHHHHH-HHHhcCC
Q 046157 240 NLVSISVNGIGIPTIDSCFKESFAYARGLCEIDLSNSFISDELLRLLGEACLPLKKLVLSHCYNF-TLAGIS-FLLSKYQ 317 (577)
Q Consensus 240 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~-~~~~l~-~~~~~~~ 317 (577)
+|+++.+.. .+..+. ..+|.++++|+++++..+.+..-....+ ..+.++..+........ ....+. ..+..+.
T Consensus 102 ~L~~l~L~~-~i~~I~---~~aF~~~~~L~~l~l~~n~i~~i~~~aF-~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~ 176 (329)
T 3sb4_A 102 TLEKVILSE-KIKNIE---DAAFKGCDNLKICQIRKKTAPNLLPEAL-ADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGE 176 (329)
T ss_dssp TCCC-CBCT-TCCEEC---TTTTTTCTTCCEEEBCCSSCCEECTTSS-CTTTCEEEECTTCTHHHHTSTTTTTSCEEESC
T ss_pred CCcEEECCc-cccchh---HHHhhcCcccceEEcCCCCccccchhhh-cCCCceEEecCcchhhhhcccccccccccccc
Confidence 666666665 332222 2245566666666666654321100011 11222332222210000 000000 0011233
Q ss_pred CcC-eeecccccccChHHHHHHHhcCCCCCEEeecCCCCCChHHHHHHHhhCCCCCeEEeeeccCCCCcccccccCCCCc
Q 046157 318 SLE-HLNLEAANFLEDESMIDLSKFLTSLNFIDLGFCAKLTNSTFFTILRECPLLSEIKMETTNLGLDDFTTPLVINPQV 396 (577)
Q Consensus 318 ~L~-~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L 396 (577)
.|+ .+.+.....+. ..+....-...++..+.+.+ .+....+..+...|++|+.+++.+|.+..-. ...|..+++|
T Consensus 177 ~L~~~i~~~~~~~l~-~~~~~~~~~~~~~~~l~~~~--~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~-~~aF~~~~~L 252 (329)
T 3sb4_A 177 PLETTIQVGAMGKLE-DEIMKAGLQPRDINFLTIEG--KLDNADFKLIRDYMPNLVSLDISKTNATTIP-DFTFAQKKYL 252 (329)
T ss_dssp CCEEEEEECTTCCHH-HHHHHTTCCGGGCSEEEEEE--CCCHHHHHHHHHHCTTCCEEECTTBCCCEEC-TTTTTTCTTC
T ss_pred ccceeEEecCCCcHH-HHHhhcccCccccceEEEee--eecHHHHHHHHHhcCCCeEEECCCCCcceec-HhhhhCCCCC
Confidence 333 33333222111 11111111234566776665 3555666666667888888888877654333 4456667777
Q ss_pred cEEEcCCCCCCCHHHHHHHHhhCCCcc-EEecCCCCCCCHHHHHHHHhhCCCCcEEEcccc
Q 046157 397 KSLHLARNGNLSDESLKKLAILCPNLE-VIDLSHCLGITEEGIGEILKSCCEIKCLEIKRC 456 (577)
Q Consensus 397 ~~L~l~~~~~l~~~~l~~l~~~~~~L~-~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 456 (577)
+.+++.++ +....-. ....|++|+ .+++.+ .++..+ ...+.+|++|+.+++..+
T Consensus 253 ~~l~l~~n--i~~I~~~-aF~~~~~L~~~l~l~~--~l~~I~-~~aF~~c~~L~~l~l~~n 307 (329)
T 3sb4_A 253 LKIKLPHN--LKTIGQR-VFSNCGRLAGTLELPA--SVTAIE-FGAFMGCDNLRYVLATGD 307 (329)
T ss_dssp CEEECCTT--CCEECTT-TTTTCTTCCEEEEECT--TCCEEC-TTTTTTCTTEEEEEECSS
T ss_pred CEEECCcc--cceehHH-HhhCChhccEEEEEcc--cceEEc-hhhhhCCccCCEEEeCCC
Confidence 77777653 2221111 122455565 666654 222111 112445555555555443
No 122
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=98.57 E-value=1.8e-09 Score=103.00 Aligned_cols=152 Identities=14% Similarity=0.094 Sum_probs=88.6
Q ss_pred hCCCCCeEEeeeccCCCCcccccccCCCCccEEEcCCCCCCCHHHHHHHHhhCCCccEEecCCCCCCCHHHHHHHHhhCC
Q 046157 367 ECPLLSEIKMETTNLGLDDFTTPLVINPQVKSLHLARNGNLSDESLKKLAILCPNLEVIDLSHCLGITEEGIGEILKSCC 446 (577)
Q Consensus 367 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 446 (577)
.+++|+.|++.+|.+.... ...+....++..+++.++..+.......+......++.|+++++ .++.. ........
T Consensus 102 ~l~~L~~L~l~~n~l~~~~-~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N-~i~~i--~~~~f~~~ 177 (350)
T 4ay9_X 102 NLPNLQYLLISNTGIKHLP-DVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKN-GIQEI--HNSAFNGT 177 (350)
T ss_dssp CCTTCCEEEEEEECCSSCC-CCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSS-CCCEE--CTTSSTTE
T ss_pred hccccccccccccccccCC-chhhcccchhhhhhhccccccccccccchhhcchhhhhhccccc-cccCC--Chhhcccc
Confidence 5677777777777664433 22334455666777655444443221112222346777888776 34421 11112345
Q ss_pred CCcEEEccccccccccc--ccccCCCceEEEccCCCCCHHHHHHHHHhCCCccEEecCCCCCCChhhHHHHHhhCCCCcE
Q 046157 447 EIKCLEIKRCRAVFDLG--IDLELPKLEVLQASGSALNDHALKMIANTCSRILHLDLDNCLNVTTSGVKEVVEHCRTLRE 524 (577)
Q Consensus 447 ~L~~L~l~~~~~l~~~~--~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~c~~l~~~~l~~~~~~~~~L~~ 524 (577)
+|+.+.+.++..++... ....+++|+.|++++|.++.... ..+.+|++|.+.++.+++.-. . +..+++|+.
T Consensus 178 ~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~----~~~~~L~~L~~l~~~~l~~lP--~-l~~l~~L~~ 250 (350)
T 4ay9_X 178 QLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPS----YGLENLKKLRARSTYNLKKLP--T-LEKLVALME 250 (350)
T ss_dssp EEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCS----SSCTTCCEEECTTCTTCCCCC--C-TTTCCSCCE
T ss_pred chhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccCh----hhhccchHhhhccCCCcCcCC--C-chhCcChhh
Confidence 68888887766666654 33567888888888887764221 124677888777776665432 1 356778888
Q ss_pred EEecC
Q 046157 525 INLRW 529 (577)
Q Consensus 525 L~l~~ 529 (577)
+++.+
T Consensus 251 l~l~~ 255 (350)
T 4ay9_X 251 ASLTY 255 (350)
T ss_dssp EECSC
T ss_pred CcCCC
Confidence 87754
No 123
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=98.56 E-value=2.5e-08 Score=95.52 Aligned_cols=38 Identities=18% Similarity=0.292 Sum_probs=18.3
Q ss_pred hCCCCCeEEeeeccCCCCcccccccCCCCccEEEcCCCC
Q 046157 367 ECPLLSEIKMETTNLGLDDFTTPLVINPQVKSLHLARNG 405 (577)
Q Consensus 367 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 405 (577)
.+++|+.|++++|.+.... ...+..+++|+.|++++|.
T Consensus 62 ~l~~L~~L~L~~N~i~~i~-~~~~~~l~~L~~L~Ls~N~ 99 (361)
T 2xot_A 62 RLTNLHSLLLSHNHLNFIS-SEAFVPVPNLRYLDLSSNH 99 (361)
T ss_dssp CCTTCCEEECCSSCCCEEC-TTTTTTCTTCCEEECCSSC
T ss_pred cccccCEEECCCCcCCccC-hhhccCCCCCCEEECCCCc
Confidence 3455555555555543322 2234445555555555543
No 124
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.56 E-value=1.6e-08 Score=87.67 Aligned_cols=129 Identities=18% Similarity=0.114 Sum_probs=90.9
Q ss_pred hhCCCccEEecCCCCCCCHHHHHHHHhhCCCCcEEEccccccccccc-ccccCCCceEEEccCCCCCHHHHHHHHHhCCC
Q 046157 417 ILCPNLEVIDLSHCLGITEEGIGEILKSCCEIKCLEIKRCRAVFDLG-IDLELPKLEVLQASGSALNDHALKMIANTCSR 495 (577)
Q Consensus 417 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~-~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~ 495 (577)
..+++|+.|++++| .++.. . .+..+++|+.|++++|. ++... ....+++|+.|++++|.++... .+ ..+++
T Consensus 45 ~~l~~L~~L~ls~n-~l~~l--~-~~~~l~~L~~L~l~~n~-l~~l~~~~~~~~~L~~L~L~~N~l~~l~--~~-~~l~~ 116 (198)
T 1ds9_A 45 STLKACKHLALSTN-NIEKI--S-SLSGMENLRILSLGRNL-IKKIENLDAVADTLEELWISYNQIASLS--GI-EKLVN 116 (198)
T ss_dssp HHTTTCSEEECSEE-EESCC--C-CHHHHTTCCEEEEEEEE-ECSCSSHHHHHHHCSEEEEEEEECCCHH--HH-HHHHH
T ss_pred hcCCCCCEEECCCC-CCccc--c-ccccCCCCCEEECCCCC-cccccchhhcCCcCCEEECcCCcCCcCC--cc-ccCCC
Confidence 35788888888876 34432 2 35677899999999887 44433 3345689999999999888743 33 35689
Q ss_pred ccEEecCCCCCCChhhHHHHHhhCCCCcEEEecCCCCCc--------HHHHHHHHHhCCCCceeccC
Q 046157 496 ILHLDLDNCLNVTTSGVKEVVEHCRTLREINLRWCDEVN--------VDIVAWMVFSRPSLRKIIPP 554 (577)
Q Consensus 496 L~~L~l~~c~~l~~~~l~~~~~~~~~L~~L~l~~c~~~~--------~~~~~~~~~~~~~L~~l~~~ 554 (577)
|+.|++++|. ++.......+..+++|+.|++++|+-.. ..........+|+|+.|+..
T Consensus 117 L~~L~l~~N~-i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld~~ 182 (198)
T 1ds9_A 117 LRVLYMSNNK-ITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLDGM 182 (198)
T ss_dssp SSEEEESEEE-CCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEECCG
T ss_pred CCEEECCCCc-CCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEECCc
Confidence 9999999974 6653332345789999999999985322 22334567889999999843
No 125
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.53 E-value=1.6e-08 Score=102.32 Aligned_cols=104 Identities=18% Similarity=0.158 Sum_probs=50.4
Q ss_pred ccCCCCccEEEcCCCCCCCHHHHHHHHhhCCCccEEecCCCCCCCHHHHHHHHhhCCCCcEEEcccccccccc---cccc
Q 046157 390 LVINPQVKSLHLARNGNLSDESLKKLAILCPNLEVIDLSHCLGITEEGIGEILKSCCEIKCLEIKRCRAVFDL---GIDL 466 (577)
Q Consensus 390 ~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~---~~~~ 466 (577)
+..+++|+.|++++|. ++. +......+++|+.|+++++ .++. +. .+..+++|+.|++++|. ++.. ....
T Consensus 459 ~~~l~~L~~L~Ls~N~-l~~--lp~~~~~l~~L~~L~Ls~N-~l~~--lp-~l~~l~~L~~L~Ls~N~-l~~~~~p~~l~ 530 (567)
T 1dce_A 459 LEQLLLVTHLDLSHNR-LRA--LPPALAALRCLEVLQASDN-ALEN--VD-GVANLPRLQELLLCNNR-LQQSAAIQPLV 530 (567)
T ss_dssp GGGGTTCCEEECCSSC-CCC--CCGGGGGCTTCCEEECCSS-CCCC--CG-GGTTCSSCCEEECCSSC-CCSSSTTGGGG
T ss_pred ccccccCcEeecCccc-ccc--cchhhhcCCCCCEEECCCC-CCCC--Cc-ccCCCCCCcEEECCCCC-CCCCCCcHHHh
Confidence 4444455555555443 221 1111223455555555554 3332 11 24455666666666655 3322 2334
Q ss_pred cCCCceEEEccCCCCCHH--HHHHHHHhCCCccEEec
Q 046157 467 ELPKLEVLQASGSALNDH--ALKMIANTCSRILHLDL 501 (577)
Q Consensus 467 ~~~~L~~L~l~~~~i~~~--~~~~l~~~~~~L~~L~l 501 (577)
.+++|+.|++++|.++.. ....+...+|+|+.|++
T Consensus 531 ~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 531 SCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp GCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred cCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence 566666666666655442 12233345677777753
No 126
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=98.51 E-value=4.9e-08 Score=86.06 Aligned_cols=34 Identities=15% Similarity=0.331 Sum_probs=14.3
Q ss_pred CCCeEEeeeccCCCCcccccccCCCCccEEEcCCC
Q 046157 370 LLSEIKMETTNLGLDDFTTPLVINPQVKSLHLARN 404 (577)
Q Consensus 370 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 404 (577)
+++.|++.+|.+.... ...+..+++|+.|+++++
T Consensus 33 ~l~~L~l~~n~i~~i~-~~~~~~l~~L~~L~Ls~N 66 (220)
T 2v9t_B 33 TITEIRLEQNTIKVIP-PGAFSPYKKLRRIDLSNN 66 (220)
T ss_dssp TCCEEECCSSCCCEEC-TTSSTTCTTCCEEECCSS
T ss_pred CCCEEECCCCcCCCcC-HhHhhCCCCCCEEECCCC
Confidence 4444444444433211 223344445555555544
No 127
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=98.50 E-value=3.5e-08 Score=87.01 Aligned_cols=86 Identities=14% Similarity=0.084 Sum_probs=37.7
Q ss_pred hhCCCCcEEEccccccccccc--ccccCCCceEEEccCCCCCHHHHHHHHHhCCCccEEecCCCCCCChhhHHHHHhhCC
Q 046157 443 KSCCEIKCLEIKRCRAVFDLG--IDLELPKLEVLQASGSALNDHALKMIANTCSRILHLDLDNCLNVTTSGVKEVVEHCR 520 (577)
Q Consensus 443 ~~~~~L~~L~l~~~~~l~~~~--~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~c~~l~~~~l~~~~~~~~ 520 (577)
..+++|+.|++++|. ++... ....+++|++|++++|.++......+ ..+++|+.|+++++. ++.... ..+..++
T Consensus 78 ~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~-~~l~~L~~L~L~~N~-l~~~~~-~~~~~l~ 153 (220)
T 2v70_A 78 EGASGVNEILLTSNR-LENVQHKMFKGLESLKTLMLRSNRITCVGNDSF-IGLSSVRLLSLYDNQ-ITTVAP-GAFDTLH 153 (220)
T ss_dssp TTCTTCCEEECCSSC-CCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSS-TTCTTCSEEECTTSC-CCCBCT-TTTTTCT
T ss_pred CCCCCCCEEECCCCc-cCccCHhHhcCCcCCCEEECCCCcCCeECHhHc-CCCccCCEEECCCCc-CCEECH-HHhcCCC
Confidence 344455555555444 22221 12244555555555554443211111 134556666665542 332211 1224556
Q ss_pred CCcEEEecCCCC
Q 046157 521 TLREINLRWCDE 532 (577)
Q Consensus 521 ~L~~L~l~~c~~ 532 (577)
+|+.|++++++-
T Consensus 154 ~L~~L~L~~N~l 165 (220)
T 2v70_A 154 SLSTLNLLANPF 165 (220)
T ss_dssp TCCEEECCSCCE
T ss_pred CCCEEEecCcCC
Confidence 666666666543
No 128
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=98.49 E-value=6.3e-08 Score=85.99 Aligned_cols=37 Identities=16% Similarity=0.154 Sum_probs=16.0
Q ss_pred CCCccEEecCCCCCCChhhHHHHHhhCCCCcEEEecCCC
Q 046157 493 CSRILHLDLDNCLNVTTSGVKEVVEHCRTLREINLRWCD 531 (577)
Q Consensus 493 ~~~L~~L~l~~c~~l~~~~l~~~~~~~~~L~~L~l~~c~ 531 (577)
+++|+.|+++++ .++.... ..+..+++|+.|++++++
T Consensus 134 l~~L~~L~L~~N-~l~~~~~-~~~~~l~~L~~L~l~~N~ 170 (229)
T 3e6j_A 134 LTHLTHLALDQN-QLKSIPH-GAFDRLSSLTHAYLFGNP 170 (229)
T ss_dssp CTTCSEEECCSS-CCCCCCT-TTTTTCTTCCEEECTTSC
T ss_pred CCCCCEEECCCC-cCCccCH-HHHhCCCCCCEEEeeCCC
Confidence 445555555543 2332111 122445555555555543
No 129
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=98.48 E-value=4.3e-08 Score=93.86 Aligned_cols=108 Identities=18% Similarity=0.047 Sum_probs=52.4
Q ss_pred CCcCeeecccccccChHHHHHHHhcCCCCCEEeecCCCCCChHHHHHHHhhCCCCCeEEeeeccCCCCcccccccCCCCc
Q 046157 317 QSLEHLNLEAANFLEDESMIDLSKFLTSLNFIDLGFCAKLTNSTFFTILRECPLLSEIKMETTNLGLDDFTTPLVINPQV 396 (577)
Q Consensus 317 ~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L 396 (577)
+.++.|+++++. ++......+...+++|+.|+++++. ++...- .....+++|++|++++|.+.... ...+..+++|
T Consensus 39 ~~l~~L~Ls~N~-l~~l~~~~~~~~l~~L~~L~L~~N~-i~~i~~-~~~~~l~~L~~L~Ls~N~l~~~~-~~~~~~l~~L 114 (361)
T 2xot_A 39 SYTALLDLSHNN-LSRLRAEWTPTRLTNLHSLLLSHNH-LNFISS-EAFVPVPNLRYLDLSSNHLHTLD-EFLFSDLQAL 114 (361)
T ss_dssp TTCSEEECCSSC-CCEECTTSSSSCCTTCCEEECCSSC-CCEECT-TTTTTCTTCCEEECCSSCCCEEC-TTTTTTCTTC
T ss_pred CCCCEEECCCCC-CCccChhhhhhcccccCEEECCCCc-CCccCh-hhccCCCCCCEEECCCCcCCcCC-HHHhCCCcCC
Confidence 356777777665 3332211111135677777776643 221110 01235667777777776654322 2334556666
Q ss_pred cEEEcCCCCCCCHHHHHHHHhhCCCccEEecCCC
Q 046157 397 KSLHLARNGNLSDESLKKLAILCPNLEVIDLSHC 430 (577)
Q Consensus 397 ~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~~ 430 (577)
+.|++++|. +...... ....+++|+.|+++++
T Consensus 115 ~~L~L~~N~-i~~~~~~-~~~~l~~L~~L~L~~N 146 (361)
T 2xot_A 115 EVLLLYNNH-IVVVDRN-AFEDMAQLQKLYLSQN 146 (361)
T ss_dssp CEEECCSSC-CCEECTT-TTTTCTTCCEEECCSS
T ss_pred CEEECCCCc-ccEECHH-HhCCcccCCEEECCCC
Confidence 666666654 3221111 1123455555555554
No 130
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=98.48 E-value=7.6e-08 Score=84.20 Aligned_cols=14 Identities=14% Similarity=0.237 Sum_probs=6.3
Q ss_pred hCCCCcEEEccccc
Q 046157 444 SCCEIKCLEIKRCR 457 (577)
Q Consensus 444 ~~~~L~~L~l~~~~ 457 (577)
.+++|+.|++++|.
T Consensus 98 ~l~~L~~L~L~~N~ 111 (208)
T 2o6s_A 98 KLTQLKELALNTNQ 111 (208)
T ss_dssp TCTTCCEEECCSSC
T ss_pred CccCCCEEEcCCCc
Confidence 34444444444443
No 131
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=98.47 E-value=7.5e-08 Score=84.86 Aligned_cols=83 Identities=14% Similarity=0.146 Sum_probs=39.5
Q ss_pred CCCccEEecCCCCCCCHHHHHHHHhhCCCCcEEEcccccccccc--cccccCCCceEEEccCCCCCHHHHHHHHHhCCCc
Q 046157 419 CPNLEVIDLSHCLGITEEGIGEILKSCCEIKCLEIKRCRAVFDL--GIDLELPKLEVLQASGSALNDHALKMIANTCSRI 496 (577)
Q Consensus 419 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~--~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L 496 (577)
+++|++|+++++ .++... ...+..+++|+.|++++|. +... .....+++|+.|++++|.++......+ ..+++|
T Consensus 80 l~~L~~L~Ls~N-~l~~~~-~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~-~~l~~L 155 (220)
T 2v70_A 80 ASGVNEILLTSN-RLENVQ-HKMFKGLESLKTLMLRSNR-ITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAF-DTLHSL 155 (220)
T ss_dssp CTTCCEEECCSS-CCCCCC-GGGGTTCSSCCEEECTTSC-CCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTT-TTCTTC
T ss_pred CCCCCEEECCCC-ccCccC-HhHhcCCcCCCEEECCCCc-CCeECHhHcCCCccCCEEECCCCcCCEECHHHh-cCCCCC
Confidence 455555555554 222111 1123445566666666555 2222 122345666666666665544221111 235666
Q ss_pred cEEecCCCC
Q 046157 497 LHLDLDNCL 505 (577)
Q Consensus 497 ~~L~l~~c~ 505 (577)
+.|++++++
T Consensus 156 ~~L~L~~N~ 164 (220)
T 2v70_A 156 STLNLLANP 164 (220)
T ss_dssp CEEECCSCC
T ss_pred CEEEecCcC
Confidence 666666654
No 132
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.46 E-value=6.7e-09 Score=90.11 Aligned_cols=128 Identities=18% Similarity=0.164 Sum_probs=63.3
Q ss_pred HhhCCCCCeEEeeeccCCCCcccccccCCCCccEEEcCCCCCCCHHHHHHHHhhCCCccEEecCCCCCCCHHHHHHHHhh
Q 046157 365 LRECPLLSEIKMETTNLGLDDFTTPLVINPQVKSLHLARNGNLSDESLKKLAILCPNLEVIDLSHCLGITEEGIGEILKS 444 (577)
Q Consensus 365 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 444 (577)
...+++|+.|++++|.+... . .+..+++|+.|++++|. ++. +......+++|+.|++++| .++.. . -+..
T Consensus 44 ~~~l~~L~~L~ls~n~l~~l--~-~~~~l~~L~~L~l~~n~-l~~--l~~~~~~~~~L~~L~L~~N-~l~~l--~-~~~~ 113 (198)
T 1ds9_A 44 LSTLKACKHLALSTNNIEKI--S-SLSGMENLRILSLGRNL-IKK--IENLDAVADTLEELWISYN-QIASL--S-GIEK 113 (198)
T ss_dssp HHHTTTCSEEECSEEEESCC--C-CHHHHTTCCEEEEEEEE-ECS--CSSHHHHHHHCSEEEEEEE-ECCCH--H-HHHH
T ss_pred HhcCCCCCEEECCCCCCccc--c-ccccCCCCCEEECCCCC-ccc--ccchhhcCCcCCEEECcCC-cCCcC--C-cccc
Confidence 44678888888887765441 1 45555666666666543 221 1111222345555555554 23321 1 1333
Q ss_pred CCCCcEEEcccccccccccccccCCCceEEEccCCCCCHHHHHHHHHhCCCccEEecCCCCCCChh---------hHHHH
Q 046157 445 CCEIKCLEIKRCRAVFDLGIDLELPKLEVLQASGSALNDHALKMIANTCSRILHLDLDNCLNVTTS---------GVKEV 515 (577)
Q Consensus 445 ~~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~c~~l~~~---------~l~~~ 515 (577)
+ ++|+.|++++|.+++.........+++|+.|++++|+ ++.. ....+
T Consensus 114 l-----------------------~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~~~~~ 169 (198)
T 1ds9_A 114 L-----------------------VNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNP-LYNDYKENNATSEYRIEV 169 (198)
T ss_dssp H-----------------------HHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCH-HHHHHHTTTTHHHHHHHH
T ss_pred C-----------------------CCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCc-cccccccccchHHHHHHH
Confidence 4 4455555555545543221122345666666666653 3221 11233
Q ss_pred HhhCCCCcEEE
Q 046157 516 VEHCRTLREIN 526 (577)
Q Consensus 516 ~~~~~~L~~L~ 526 (577)
+..+++|+.|+
T Consensus 170 ~~~l~~L~~Ld 180 (198)
T 1ds9_A 170 VKRLPNLKKLD 180 (198)
T ss_dssp HHHCSSCSEEC
T ss_pred HHhCCCcEEEC
Confidence 46677777776
No 133
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.45 E-value=7.2e-08 Score=91.09 Aligned_cols=264 Identities=15% Similarity=0.145 Sum_probs=140.0
Q ss_pred hhcCCCEEEcCCCCCChHHHHHHHhcCCCCcEEEecCCCCCCHHHHHHHHhcCCCcCeeecccccccChHHHHHHHhc--
Q 046157 264 YARGLCEIDLSNSFISDELLRLLGEACLPLKKLVLSHCYNFTLAGISFLLSKYQSLEHLNLEAANFLEDESMIDLSKF-- 341 (577)
Q Consensus 264 ~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~-- 341 (577)
..+++++|.+.+. +....+..+...+++|+.|+++++......+.. ...+.+..+.+..+. +.+. ....
T Consensus 23 ~~~~l~~L~l~g~-i~~~~~~~l~~~l~~L~~LdLs~n~i~~~~~~~---~~~~~~~~~~~~~~~-I~~~----aF~~~~ 93 (329)
T 3sb4_A 23 EANSITHLTLTGK-LNAEDFRHLRDEFPSLKVLDISNAEIKMYSGKA---GTYPNGKFYIYMANF-VPAY----AFSNVV 93 (329)
T ss_dssp HHHHCSEEEEEEE-ECHHHHHHHHHSCTTCCEEEEEEEEECCEEESS---SSSGGGCCEEECTTE-ECTT----TTEEEE
T ss_pred hhCceeEEEEecc-ccHHHHHHHHHhhccCeEEecCcceeEEecCcc---ccccccccccccccc-cCHH----Hhcccc
Confidence 3567888888764 455556666555788888888876433100000 001111122222111 1111 1123
Q ss_pred ------CCCCCEEeecCC-CCCChHHHHHHHhhCCCCCeEEeeeccCCCCcccccccCCCCccEEEcCC-----------
Q 046157 342 ------LTSLNFIDLGFC-AKLTNSTFFTILRECPLLSEIKMETTNLGLDDFTTPLVINPQVKSLHLAR----------- 403 (577)
Q Consensus 342 ------~~~L~~L~l~~~-~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~----------- 403 (577)
+++|+.+.+... ..+.+.++ ..|++|+.+++..+.+..-. ...+..+.++..+....
T Consensus 94 ~~~~~g~~~L~~l~L~~~i~~I~~~aF----~~~~~L~~l~l~~n~i~~i~-~~aF~~~~~l~~l~~~~~~~~~~~~~i~ 168 (329)
T 3sb4_A 94 NGVTKGKQTLEKVILSEKIKNIEDAAF----KGCDNLKICQIRKKTAPNLL-PEALADSVTAIFIPLGSSDAYRFKNRWE 168 (329)
T ss_dssp TTEEEECTTCCC-CBCTTCCEECTTTT----TTCTTCCEEEBCCSSCCEEC-TTSSCTTTCEEEECTTCTHHHHTSTTTT
T ss_pred cccccccCCCcEEECCccccchhHHHh----hcCcccceEEcCCCCccccc-hhhhcCCCceEEecCcchhhhhcccccc
Confidence 566777666541 12222222 35677777777666543221 22333344444443322
Q ss_pred ------------------CCCCCHHHHHHHHhhCCCccEEecCCCCCCCHHHHHHHHhhCCCCcEEEccccccccccc--
Q 046157 404 ------------------NGNLSDESLKKLAILCPNLEVIDLSHCLGITEEGIGEILKSCCEIKCLEIKRCRAVFDLG-- 463 (577)
Q Consensus 404 ------------------~~~l~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~-- 463 (577)
...+... +........++..+.+.+ .+....+..+...|++|+.+++.++. ++..+
T Consensus 169 ~~~f~~~~~L~~~i~~~~~~~l~~~-~~~~~~~~~~~~~l~~~~--~l~~~~~~~l~~~~~~L~~l~L~~n~-i~~I~~~ 244 (329)
T 3sb4_A 169 HFAFIEGEPLETTIQVGAMGKLEDE-IMKAGLQPRDINFLTIEG--KLDNADFKLIRDYMPNLVSLDISKTN-ATTIPDF 244 (329)
T ss_dssp TSCEEESCCCEEEEEECTTCCHHHH-HHHTTCCGGGCSEEEEEE--CCCHHHHHHHHHHCTTCCEEECTTBC-CCEECTT
T ss_pred ccccccccccceeEEecCCCcHHHH-HhhcccCccccceEEEee--eecHHHHHHHHHhcCCCeEEECCCCC-cceecHh
Confidence 1111110 000111234566666655 35556666666679999999999876 55544
Q ss_pred ccccCCCceEEEccCCCCCHHHHHHHHHhCCCcc-EEecCCCCCCChhhHHHHHhhCCCCcEEEecCCCCCcHHHHHHHH
Q 046157 464 IDLELPKLEVLQASGSALNDHALKMIANTCSRIL-HLDLDNCLNVTTSGVKEVVEHCRTLREINLRWCDEVNVDIVAWMV 542 (577)
Q Consensus 464 ~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~-~L~l~~c~~l~~~~l~~~~~~~~~L~~L~l~~c~~~~~~~~~~~~ 542 (577)
....+++|+++++.++ +...+-. ....|++|+ .+.+.+ +++..+- ..+.+|++|+.+++++. .++. .-...+
T Consensus 245 aF~~~~~L~~l~l~~n-i~~I~~~-aF~~~~~L~~~l~l~~--~l~~I~~-~aF~~c~~L~~l~l~~n-~i~~-I~~~aF 317 (329)
T 3sb4_A 245 TFAQKKYLLKIKLPHN-LKTIGQR-VFSNCGRLAGTLELPA--SVTAIEF-GAFMGCDNLRYVLATGD-KITT-LGDELF 317 (329)
T ss_dssp TTTTCTTCCEEECCTT-CCEECTT-TTTTCTTCCEEEEECT--TCCEECT-TTTTTCTTEEEEEECSS-CCCE-ECTTTT
T ss_pred hhhCCCCCCEEECCcc-cceehHH-HhhCChhccEEEEEcc--cceEEch-hhhhCCccCCEEEeCCC-ccCc-cchhhh
Confidence 3457889999999886 3332211 223688899 999976 3544332 23578999999998654 2221 112345
Q ss_pred HhCCCCceec
Q 046157 543 FSRPSLRKII 552 (577)
Q Consensus 543 ~~~~~L~~l~ 552 (577)
..|++|+.+.
T Consensus 318 ~~~~~L~~ly 327 (329)
T 3sb4_A 318 GNGVPSKLIY 327 (329)
T ss_dssp CTTCCCCEEE
T ss_pred cCCcchhhhc
Confidence 5788888875
No 134
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=98.43 E-value=3.4e-07 Score=81.21 Aligned_cols=38 Identities=21% Similarity=0.156 Sum_probs=17.5
Q ss_pred hCCCCCeEEeeeccCCCCcccccccCCCCccEEEcCCCC
Q 046157 367 ECPLLSEIKMETTNLGLDDFTTPLVINPQVKSLHLARNG 405 (577)
Q Consensus 367 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 405 (577)
.+++|+.|++++|.+.... ...+..+++|+.|++++|.
T Consensus 62 ~l~~L~~L~L~~N~l~~i~-~~~~~~l~~L~~L~Ls~N~ 99 (229)
T 3e6j_A 62 SLINLKELYLGSNQLGALP-VGVFDSLTQLTVLDLGTNQ 99 (229)
T ss_dssp TCTTCCEEECCSSCCCCCC-TTTTTTCTTCCEEECCSSC
T ss_pred CccCCcEEECCCCCCCCcC-hhhcccCCCcCEEECCCCc
Confidence 3455555555555442221 2223445555555555543
No 135
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=98.37 E-value=2.3e-07 Score=81.75 Aligned_cols=109 Identities=12% Similarity=0.089 Sum_probs=54.9
Q ss_pred hCCCCCeEEeeeccCCCCcccccccCCCCccEEEcCCCCCCCHHHHHHHHhhCCCccEEecCCCCCCCHHHHHHHHhhCC
Q 046157 367 ECPLLSEIKMETTNLGLDDFTTPLVINPQVKSLHLARNGNLSDESLKKLAILCPNLEVIDLSHCLGITEEGIGEILKSCC 446 (577)
Q Consensus 367 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 446 (577)
.+++|+.|++++|.+.... ...+..+++|+.|+++++. ++... ......+++|+.|+++++ .++... ...+..++
T Consensus 54 ~l~~L~~L~Ls~N~i~~~~-~~~~~~l~~L~~L~Ls~N~-l~~l~-~~~f~~l~~L~~L~L~~N-~l~~~~-~~~~~~l~ 128 (220)
T 2v9t_B 54 PYKKLRRIDLSNNQISELA-PDAFQGLRSLNSLVLYGNK-ITELP-KSLFEGLFSLQLLLLNAN-KINCLR-VDAFQDLH 128 (220)
T ss_dssp TCTTCCEEECCSSCCCEEC-TTTTTTCSSCCEEECCSSC-CCCCC-TTTTTTCTTCCEEECCSS-CCCCCC-TTTTTTCT
T ss_pred CCCCCCEEECCCCcCCCcC-HHHhhCCcCCCEEECCCCc-CCccC-HhHccCCCCCCEEECCCC-CCCEeC-HHHcCCCC
Confidence 4566777777766654322 3455666777777777654 33211 111223566666666665 233211 11234556
Q ss_pred CCcEEEccccccccccc--ccccCCCceEEEccCCCC
Q 046157 447 EIKCLEIKRCRAVFDLG--IDLELPKLEVLQASGSAL 481 (577)
Q Consensus 447 ~L~~L~l~~~~~l~~~~--~~~~~~~L~~L~l~~~~i 481 (577)
+|+.|++++|. ++... ....+++|+.|++++|.+
T Consensus 129 ~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~~ 164 (220)
T 2v9t_B 129 NLNLLSLYDNK-LQTIAKGTFSPLRAIQTMHLAQNPF 164 (220)
T ss_dssp TCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSSCE
T ss_pred CCCEEECCCCc-CCEECHHHHhCCCCCCEEEeCCCCc
Confidence 66666666665 32222 122345555555555443
No 136
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=98.36 E-value=6.5e-07 Score=78.22 Aligned_cols=109 Identities=12% Similarity=0.080 Sum_probs=54.7
Q ss_pred hCCCCCeEEeeeccCCCCcccccccCCCCccEEEcCCCCCCCHHHHHHHHhhCCCccEEecCCCCCCCHHHHHHHHhhCC
Q 046157 367 ECPLLSEIKMETTNLGLDDFTTPLVINPQVKSLHLARNGNLSDESLKKLAILCPNLEVIDLSHCLGITEEGIGEILKSCC 446 (577)
Q Consensus 367 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 446 (577)
.+++|++|++++|.+.... ...+..+++|++|+++++. ++.... .....+++|++|+++++ .++... ...+..++
T Consensus 50 ~l~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~Ls~n~-l~~~~~-~~~~~l~~L~~L~L~~N-~l~~~~-~~~~~~l~ 124 (208)
T 2o6s_A 50 ELTSLTQLYLGGNKLQSLP-NGVFNKLTSLTYLNLSTNQ-LQSLPN-GVFDKLTQLKELALNTN-QLQSLP-DGVFDKLT 124 (208)
T ss_dssp TCTTCSEEECCSSCCCCCC-TTTTTTCTTCCEEECCSSC-CCCCCT-TTTTTCTTCCEEECCSS-CCCCCC-TTTTTTCT
T ss_pred ccccCcEEECCCCccCccC-hhhcCCCCCcCEEECCCCc-CCccCH-hHhcCccCCCEEEcCCC-cCcccC-HhHhccCC
Confidence 4556666666665544221 2234556666666666654 332111 11234567777777665 333211 11234566
Q ss_pred CCcEEEccccccccccc--ccccCCCceEEEccCCCC
Q 046157 447 EIKCLEIKRCRAVFDLG--IDLELPKLEVLQASGSAL 481 (577)
Q Consensus 447 ~L~~L~l~~~~~l~~~~--~~~~~~~L~~L~l~~~~i 481 (577)
+|+.|++++|. ++... ....+++|+.|++++|.+
T Consensus 125 ~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~l~~N~~ 160 (208)
T 2o6s_A 125 QLKDLRLYQNQ-LKSVPDGVFDRLTSLQYIWLHDNPW 160 (208)
T ss_dssp TCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSCCB
T ss_pred cCCEEECCCCc-cceeCHHHhccCCCccEEEecCCCe
Confidence 77777777665 33222 123455666666666544
No 137
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=98.25 E-value=2.6e-05 Score=65.70 Aligned_cols=119 Identities=14% Similarity=0.227 Sum_probs=62.5
Q ss_pred HHHHHHhhCCCccEEecCCCCCCCHHHHHHHHhhC---CCCcEEEccccccccccccc------ccCCCceEEEccCCCC
Q 046157 411 SLKKLAILCPNLEVIDLSHCLGITEEGIGEILKSC---CEIKCLEIKRCRAVFDLGID------LELPKLEVLQASGSAL 481 (577)
Q Consensus 411 ~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~---~~L~~L~l~~~~~l~~~~~~------~~~~~L~~L~l~~~~i 481 (577)
.+..+...-+.|+.|+++++..+.+.+...+...+ ..|+.|+|++|. +++.+.. ..-..|++|+|++|.|
T Consensus 32 ~l~~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~-igd~ga~alA~aL~~N~tL~~L~L~~N~I 110 (197)
T 1pgv_A 32 CINRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTA-ISDSEARGLIELIETSPSLRVLNVESNFL 110 (197)
T ss_dssp HHHHHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSC-CBHHHHTTHHHHHHHCSSCCEEECCSSBC
T ss_pred HHHHHHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCC-CChHHHHHHHHHHhcCCccCeEecCCCcC
Confidence 34444444566777777654456666655444432 345555555554 3333211 1234556666666667
Q ss_pred CHHHHHHHHHhC---CCccEEecCCCC--CCChhhH---HHHHhhCCCCcEEEecCC
Q 046157 482 NDHALKMIANTC---SRILHLDLDNCL--NVTTSGV---KEVVEHCRTLREINLRWC 530 (577)
Q Consensus 482 ~~~~~~~l~~~~---~~L~~L~l~~c~--~l~~~~l---~~~~~~~~~L~~L~l~~c 530 (577)
++.+...+++-+ ..|++|+|+++. .+.+.+- ...+...+.|++|+++.+
T Consensus 111 g~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~ 167 (197)
T 1pgv_A 111 TPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFA 167 (197)
T ss_dssp CHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCC
T ss_pred CHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCC
Confidence 776666665533 356677776542 2454432 233345566666666553
No 138
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.09 E-value=3.3e-06 Score=85.48 Aligned_cols=103 Identities=17% Similarity=0.232 Sum_probs=58.2
Q ss_pred hCCCccEEecCCCCCCCHHHHHHHHhhCCCCcEEEcccccccccccccccCCCceEEEccCCCCCHHH-HHHHHHhCCCc
Q 046157 418 LCPNLEVIDLSHCLGITEEGIGEILKSCCEIKCLEIKRCRAVFDLGIDLELPKLEVLQASGSALNDHA-LKMIANTCSRI 496 (577)
Q Consensus 418 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~i~~~~-~~~l~~~~~~L 496 (577)
.+++|+.|++++| .++. +...+..+++|+.|++++|. ++.......+++|+.|++++|.++... ...+ ..+++|
T Consensus 461 ~l~~L~~L~Ls~N-~l~~--lp~~~~~l~~L~~L~Ls~N~-l~~lp~l~~l~~L~~L~Ls~N~l~~~~~p~~l-~~l~~L 535 (567)
T 1dce_A 461 QLLLVTHLDLSHN-RLRA--LPPALAALRCLEVLQASDNA-LENVDGVANLPRLQELLLCNNRLQQSAAIQPL-VSCPRL 535 (567)
T ss_dssp GGTTCCEEECCSS-CCCC--CCGGGGGCTTCCEEECCSSC-CCCCGGGTTCSSCCEEECCSSCCCSSSTTGGG-GGCTTC
T ss_pred ccccCcEeecCcc-cccc--cchhhhcCCCCCEEECCCCC-CCCCcccCCCCCCcEEECCCCCCCCCCCcHHH-hcCCCC
Confidence 4567777777766 3431 22235566777777777765 444443445677777777777665432 2222 246677
Q ss_pred cEEecCCCCCCChh--hHHHHHhhCCCCcEEE
Q 046157 497 LHLDLDNCLNVTTS--GVKEVVEHCRTLREIN 526 (577)
Q Consensus 497 ~~L~l~~c~~l~~~--~l~~~~~~~~~L~~L~ 526 (577)
+.|++++|+ ++.. ....+...+|+|+.|+
T Consensus 536 ~~L~L~~N~-l~~~~~~~~~l~~~lp~L~~L~ 566 (567)
T 1dce_A 536 VLLNLQGNS-LCQEEGIQERLAEMLPSVSSIL 566 (567)
T ss_dssp CEEECTTSG-GGGSSSCTTHHHHHCTTCSEEE
T ss_pred CEEEecCCc-CCCCccHHHHHHHHCcccCccC
Confidence 777777654 4321 2334445567777665
No 139
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=98.07 E-value=1.6e-06 Score=74.44 Aligned_cols=39 Identities=15% Similarity=0.313 Sum_probs=17.3
Q ss_pred hhCCCCcEEEccccccccccc--ccccCCCceEEEccCCCCC
Q 046157 443 KSCCEIKCLEIKRCRAVFDLG--IDLELPKLEVLQASGSALN 482 (577)
Q Consensus 443 ~~~~~L~~L~l~~~~~l~~~~--~~~~~~~L~~L~l~~~~i~ 482 (577)
..+++|+.|++++|. ++... ....+++|++|++++|.++
T Consensus 75 ~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~ 115 (192)
T 1w8a_A 75 EGASHIQELQLGENK-IKEISNKMFLGLHQLKTLNLYDNQIS 115 (192)
T ss_dssp TTCTTCCEEECCSCC-CCEECSSSSTTCTTCCEEECCSSCCC
T ss_pred CCcccCCEEECCCCc-CCccCHHHhcCCCCCCEEECCCCcCC
Confidence 344555555555554 22221 1223455555555555444
No 140
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=98.01 E-value=0.00011 Score=61.83 Aligned_cols=121 Identities=12% Similarity=0.158 Sum_probs=94.1
Q ss_pred HHHHHHHHhhCCCCcEEEccccccccccccc------ccCCCceEEEccCCCCCHHHHHHHHH---hCCCccEEecCCCC
Q 046157 435 EEGIGEILKSCCEIKCLEIKRCRAVFDLGID------LELPKLEVLQASGSALNDHALKMIAN---TCSRILHLDLDNCL 505 (577)
Q Consensus 435 ~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~------~~~~~L~~L~l~~~~i~~~~~~~l~~---~~~~L~~L~l~~c~ 505 (577)
+..+..+...-+.|+.|+++++..+.+.+.. ..-..|+.|+|++|.++|.+...+++ .-..|++|+|+++
T Consensus 30 ~~~l~~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N- 108 (197)
T 1pgv_A 30 ESCINRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESN- 108 (197)
T ss_dssp HHHHHHHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSS-
T ss_pred HHHHHHHHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCC-
Confidence 3457777788899999999987557765521 25678999999999999998766654 4479999999996
Q ss_pred CCChhhHHHHHhhC---CCCcEEEecCCC--CCcHHH---HHHHHHhCCCCceeccCCC
Q 046157 506 NVTTSGVKEVVEHC---RTLREINLRWCD--EVNVDI---VAWMVFSRPSLRKIIPPCG 556 (577)
Q Consensus 506 ~l~~~~l~~~~~~~---~~L~~L~l~~c~--~~~~~~---~~~~~~~~~~L~~l~~~~~ 556 (577)
.|++.|...+...+ +.|++|+++++. .+.+.+ +....+.-+.|+.|++..+
T Consensus 109 ~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~ 167 (197)
T 1pgv_A 109 FLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFA 167 (197)
T ss_dssp BCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCC
T ss_pred cCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCC
Confidence 59999998887554 569999999864 355543 5566778899999998743
No 141
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=97.94 E-value=9.4e-06 Score=68.61 Aligned_cols=107 Identities=11% Similarity=0.069 Sum_probs=42.1
Q ss_pred CCCCeEEeeeccCCCCcccccccCCCCccEEEcCCCCCCCHHHHHHHHhhCCCccEEecCCCCCCCHHHHHHHHhhCCCC
Q 046157 369 PLLSEIKMETTNLGLDDFTTPLVINPQVKSLHLARNGNLSDESLKKLAILCPNLEVIDLSHCLGITEEGIGEILKSCCEI 448 (577)
Q Consensus 369 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L 448 (577)
++|++|++++|.+.... ...+..+++|+.|+++++. ++.... .....+++|+.|+++++ .++... ...+..+++|
T Consensus 28 ~~l~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~n~-l~~~~~-~~~~~l~~L~~L~l~~N-~l~~~~-~~~~~~l~~L 102 (177)
T 2o6r_A 28 SSATRLELESNKLQSLP-HGVFDKLTQLTKLSLSQNQ-IQSLPD-GVFDKLTKLTILYLHEN-KLQSLP-NGVFDKLTQL 102 (177)
T ss_dssp TTCSEEECCSSCCCCCC-TTTTTTCTTCSEEECCSSC-CCCCCT-TTTTTCTTCCEEECCSS-CCCCCC-TTTTTTCTTC
T ss_pred CCCcEEEeCCCcccEeC-HHHhcCcccccEEECCCCc-ceEeCh-hHccCCCccCEEECCCC-CccccC-HHHhhCCccc
Confidence 34555555544433211 2223444555555555443 221100 01123445555555544 222110 1112344555
Q ss_pred cEEEcccccccccccc--cccCCCceEEEccCCCC
Q 046157 449 KCLEIKRCRAVFDLGI--DLELPKLEVLQASGSAL 481 (577)
Q Consensus 449 ~~L~l~~~~~l~~~~~--~~~~~~L~~L~l~~~~i 481 (577)
+.|++++|. ++.... ...+++|+.|++++|.+
T Consensus 103 ~~L~l~~N~-l~~~~~~~~~~l~~L~~L~l~~N~~ 136 (177)
T 2o6r_A 103 KELALDTNQ-LKSVPDGIFDRLTSLQKIWLHTNPW 136 (177)
T ss_dssp CEEECCSSC-CSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred CEEECcCCc-ceEeCHHHhcCCcccCEEEecCCCe
Confidence 555555553 222221 12344455555555443
No 142
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=97.93 E-value=7.1e-06 Score=70.35 Aligned_cols=12 Identities=25% Similarity=0.315 Sum_probs=5.6
Q ss_pred CCCccEEecCCC
Q 046157 493 CSRILHLDLDNC 504 (577)
Q Consensus 493 ~~~L~~L~l~~c 504 (577)
+++|+.|+++++
T Consensus 125 l~~L~~L~L~~N 136 (193)
T 2wfh_A 125 LSALSHLAIGAN 136 (193)
T ss_dssp CTTCCEEECCSS
T ss_pred CccccEEEeCCC
Confidence 344455555443
No 143
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=97.92 E-value=7.4e-06 Score=70.26 Aligned_cols=108 Identities=18% Similarity=0.177 Sum_probs=57.5
Q ss_pred CCCeEEeeeccCCCCcccccccCCCCccEEEcCCCCCCCHHHHHHHHhhCCCccEEecCCCCCCCHHHHHHHHhhCCCCc
Q 046157 370 LLSEIKMETTNLGLDDFTTPLVINPQVKSLHLARNGNLSDESLKKLAILCPNLEVIDLSHCLGITEEGIGEILKSCCEIK 449 (577)
Q Consensus 370 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~ 449 (577)
++++|++.+|.+........+..+++|+.|+++++. ++..... ....+++|+.|+++++ .++.... ..+..+++|+
T Consensus 30 ~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~-~~~~l~~L~~L~Ls~N-~l~~~~~-~~~~~l~~L~ 105 (192)
T 1w8a_A 30 HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQ-LTGIEPN-AFEGASHIQELQLGEN-KIKEISN-KMFLGLHQLK 105 (192)
T ss_dssp TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSC-CCCBCTT-TTTTCTTCCEEECCSC-CCCEECS-SSSTTCTTCC
T ss_pred CCCEEECCCCcCCccCCccccccCCCCCEEECCCCC-CCCcCHh-HcCCcccCCEEECCCC-cCCccCH-HHhcCCCCCC
Confidence 455555555554332211124556666666666654 3321111 1123566777777665 3432211 1245577888
Q ss_pred EEEcccccccccc--cccccCCCceEEEccCCCCC
Q 046157 450 CLEIKRCRAVFDL--GIDLELPKLEVLQASGSALN 482 (577)
Q Consensus 450 ~L~l~~~~~l~~~--~~~~~~~~L~~L~l~~~~i~ 482 (577)
.|++++|. ++.. .....+++|+.|++++|.+.
T Consensus 106 ~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~ 139 (192)
T 1w8a_A 106 TLNLYDNQ-ISCVMPGSFEHLNSLTSLNLASNPFN 139 (192)
T ss_dssp EEECCSSC-CCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred EEECCCCc-CCeeCHHHhhcCCCCCEEEeCCCCcc
Confidence 88888876 3332 23345677778887777654
No 144
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=97.91 E-value=5.7e-06 Score=70.97 Aligned_cols=89 Identities=11% Similarity=0.060 Sum_probs=53.2
Q ss_pred HhhCCCCcEEEccccccccccc--ccccCCCceEEEccCCCCCHHHHHHHHHhCCCccEEecCCCCCCChhhHHHHHhhC
Q 046157 442 LKSCCEIKCLEIKRCRAVFDLG--IDLELPKLEVLQASGSALNDHALKMIANTCSRILHLDLDNCLNVTTSGVKEVVEHC 519 (577)
Q Consensus 442 ~~~~~~L~~L~l~~~~~l~~~~--~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~c~~l~~~~l~~~~~~~ 519 (577)
+..+++|+.|++++|. ++... ....+++|++|++++|.++......+ ..+++|+.|+++++. ++.... ..+..+
T Consensus 50 ~~~l~~L~~L~Ls~N~-i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f-~~l~~L~~L~L~~N~-l~~~~~-~~~~~l 125 (193)
T 2wfh_A 50 LSNYKHLTLIDLSNNR-ISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTF-DGLKSLRLLSLHGND-ISVVPE-GAFNDL 125 (193)
T ss_dssp GGGCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTT-TTCTTCCEEECCSSC-CCBCCT-TTTTTC
T ss_pred hhcccCCCEEECCCCc-CCEeCHhHccCCCCCCEEECCCCccCEeCHHHh-CCCCCCCEEECCCCC-CCeeCh-hhhhcC
Confidence 4455666666666655 33322 23356677777777766654322222 246788888888754 553221 234678
Q ss_pred CCCcEEEecCCCCCc
Q 046157 520 RTLREINLRWCDEVN 534 (577)
Q Consensus 520 ~~L~~L~l~~c~~~~ 534 (577)
++|+.|++++++...
T Consensus 126 ~~L~~L~L~~N~~~C 140 (193)
T 2wfh_A 126 SALSHLAIGANPLYC 140 (193)
T ss_dssp TTCCEEECCSSCEEC
T ss_pred ccccEEEeCCCCeec
Confidence 999999999976543
No 145
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=97.88 E-value=6.1e-06 Score=86.38 Aligned_cols=110 Identities=23% Similarity=0.239 Sum_probs=68.7
Q ss_pred hhCCCCCeEEeeeccCCCCcccccccCCCCccEEEcCCCCCCCHHHHHHHHhhCCCccEEecCCCCCCCHHHHHHHHhhC
Q 046157 366 RECPLLSEIKMETTNLGLDDFTTPLVINPQVKSLHLARNGNLSDESLKKLAILCPNLEVIDLSHCLGITEEGIGEILKSC 445 (577)
Q Consensus 366 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 445 (577)
..+++|+.|++++|.+.. ....+..+++|+.|+|++|. ++. +..-...+++|+.|++++| .++. +...+..+
T Consensus 221 ~~l~~L~~L~Ls~n~l~~--l~~~~~~l~~L~~L~Ls~N~-l~~--lp~~~~~l~~L~~L~Ls~N-~l~~--lp~~~~~l 292 (727)
T 4b8c_D 221 YDDQLWHALDLSNLQIFN--ISANIFKYDFLTRLYLNGNS-LTE--LPAEIKNLSNLRVLDLSHN-RLTS--LPAELGSC 292 (727)
T ss_dssp -CCCCCCEEECTTSCCSC--CCGGGGGCCSCSCCBCTTSC-CSC--CCGGGGGGTTCCEEECTTS-CCSS--CCSSGGGG
T ss_pred ccCCCCcEEECCCCCCCC--CChhhcCCCCCCEEEeeCCc-Ccc--cChhhhCCCCCCEEeCcCC-cCCc--cChhhcCC
Confidence 346667777777766542 23344567777777777765 431 1111235677888888776 3441 22235677
Q ss_pred CCCcEEEccccccccccc-ccccCCCceEEEccCCCCCHH
Q 046157 446 CEIKCLEIKRCRAVFDLG-IDLELPKLEVLQASGSALNDH 484 (577)
Q Consensus 446 ~~L~~L~l~~~~~l~~~~-~~~~~~~L~~L~l~~~~i~~~ 484 (577)
++|+.|+|++|. ++... ....+++|+.|+|++|.++..
T Consensus 293 ~~L~~L~L~~N~-l~~lp~~~~~l~~L~~L~L~~N~l~~~ 331 (727)
T 4b8c_D 293 FQLKYFYFFDNM-VTTLPWEFGNLCNLQFLGVEGNPLEKQ 331 (727)
T ss_dssp TTCSEEECCSSC-CCCCCSSTTSCTTCCCEECTTSCCCSH
T ss_pred CCCCEEECCCCC-CCccChhhhcCCCccEEeCCCCccCCC
Confidence 888888888886 44443 244678888888888888754
No 146
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=97.81 E-value=7.1e-06 Score=69.38 Aligned_cols=86 Identities=15% Similarity=0.175 Sum_probs=40.2
Q ss_pred hCCCCcEEEccccccccccc--ccccCCCceEEEccCCCCCHHHHHHHHHhCCCccEEecCCCCCCChhhHHHHHhhCCC
Q 046157 444 SCCEIKCLEIKRCRAVFDLG--IDLELPKLEVLQASGSALNDHALKMIANTCSRILHLDLDNCLNVTTSGVKEVVEHCRT 521 (577)
Q Consensus 444 ~~~~L~~L~l~~~~~l~~~~--~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~c~~l~~~~l~~~~~~~~~ 521 (577)
.+++|+.|++++|. ++... ....+++|+.|++++|.++..... ....+++|+.|+++++ .++... ...+..+++
T Consensus 50 ~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~-~~~~l~~L~~L~l~~N-~l~~~~-~~~~~~l~~ 125 (177)
T 2o6r_A 50 KLTQLTKLSLSQNQ-IQSLPDGVFDKLTKLTILYLHENKLQSLPNG-VFDKLTQLKELALDTN-QLKSVP-DGIFDRLTS 125 (177)
T ss_dssp TCTTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCTT-TTTTCTTCCEEECCSS-CCSCCC-TTTTTTCTT
T ss_pred CcccccEEECCCCc-ceEeChhHccCCCccCEEECCCCCccccCHH-HhhCCcccCEEECcCC-cceEeC-HHHhcCCcc
Confidence 34444455544443 22221 122455555555555544432111 1123466666666664 344221 122345667
Q ss_pred CcEEEecCCCCC
Q 046157 522 LREINLRWCDEV 533 (577)
Q Consensus 522 L~~L~l~~c~~~ 533 (577)
|+.|++++++-.
T Consensus 126 L~~L~l~~N~~~ 137 (177)
T 2o6r_A 126 LQKIWLHTNPWD 137 (177)
T ss_dssp CCEEECCSSCBC
T ss_pred cCEEEecCCCee
Confidence 777777776543
No 147
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=97.75 E-value=1.1e-05 Score=71.30 Aligned_cols=35 Identities=17% Similarity=0.195 Sum_probs=32.8
Q ss_pred CCCChHHHHHHHHhcCCccchhhhHHhhHHHHhhhc
Q 046157 6 LDLPPECWELIFNSLNDQSHFESLSLVSHRFLSITN 41 (577)
Q Consensus 6 ~~LP~evl~~I~~~L~~~~~~~~~~~vcr~w~~~~~ 41 (577)
.+||+||+.+||+|| +++|++++++|||+||.++.
T Consensus 6 ~~LP~ei~l~IlsfL-~p~DL~~l~~vcr~Wr~la~ 40 (312)
T 3l2o_B 6 TRLPIDVQLYILSFL-SPHDLCQLGSTNHYWNETVR 40 (312)
T ss_dssp HHSCHHHHHHHHHTS-CHHHHHHHHTTCHHHHHHHT
T ss_pred HhCCHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHhc
Confidence 469999999999999 79999999999999999983
No 148
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=97.74 E-value=4.7e-06 Score=87.22 Aligned_cols=111 Identities=11% Similarity=0.066 Sum_probs=65.6
Q ss_pred ccccCCCCccEEEcCCCCCCCHHHHHHHHhhCCCccEEecCCCCCCCHHHHHHHHhhCCCCcEEEccccccccccc-ccc
Q 046157 388 TPLVINPQVKSLHLARNGNLSDESLKKLAILCPNLEVIDLSHCLGITEEGIGEILKSCCEIKCLEIKRCRAVFDLG-IDL 466 (577)
Q Consensus 388 ~~~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~-~~~ 466 (577)
..+..+++|+.|+++++. +.. +..-...+++|+.|++++| .++. +...+..+++|+.|+|++|. ++... ...
T Consensus 218 ~~~~~l~~L~~L~Ls~n~-l~~--l~~~~~~l~~L~~L~Ls~N-~l~~--lp~~~~~l~~L~~L~Ls~N~-l~~lp~~~~ 290 (727)
T 4b8c_D 218 DSKYDDQLWHALDLSNLQ-IFN--ISANIFKYDFLTRLYLNGN-SLTE--LPAEIKNLSNLRVLDLSHNR-LTSLPAELG 290 (727)
T ss_dssp ----CCCCCCEEECTTSC-CSC--CCGGGGGCCSCSCCBCTTS-CCSC--CCGGGGGGTTCCEEECTTSC-CSSCCSSGG
T ss_pred hhhccCCCCcEEECCCCC-CCC--CChhhcCCCCCCEEEeeCC-cCcc--cChhhhCCCCCCEEeCcCCc-CCccChhhc
Confidence 345667788888888766 332 1111125678888888776 4441 22235677788888888877 44332 334
Q ss_pred cCCCceEEEccCCCCCHHHHHHHHHhCCCccEEecCCCCCCC
Q 046157 467 ELPKLEVLQASGSALNDHALKMIANTCSRILHLDLDNCLNVT 508 (577)
Q Consensus 467 ~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~c~~l~ 508 (577)
.+++|+.|+|++|.++.... . ...+++|+.|+|++|+ ++
T Consensus 291 ~l~~L~~L~L~~N~l~~lp~-~-~~~l~~L~~L~L~~N~-l~ 329 (727)
T 4b8c_D 291 SCFQLKYFYFFDNMVTTLPW-E-FGNLCNLQFLGVEGNP-LE 329 (727)
T ss_dssp GGTTCSEEECCSSCCCCCCS-S-TTSCTTCCCEECTTSC-CC
T ss_pred CCCCCCEEECCCCCCCccCh-h-hhcCCCccEEeCCCCc-cC
Confidence 67778888888877653211 1 2346777888887764 54
No 149
>2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A
Probab=97.70 E-value=1.4e-05 Score=71.65 Aligned_cols=37 Identities=16% Similarity=0.251 Sum_probs=33.8
Q ss_pred CCCCCChHHHHHHHHhcCCccchh-hhHHhhHHHHhhhc
Q 046157 4 NPLDLPPECWELIFNSLNDQSHFE-SLSLVSHRFLSITN 41 (577)
Q Consensus 4 ~~~~LP~evl~~I~~~L~~~~~~~-~~~~vcr~w~~~~~ 41 (577)
....||+|++.+||.|| +.++++ ++++|||+|++++.
T Consensus 50 ~~~~LP~ell~~Il~~L-p~~~L~~r~~~VCk~Wr~l~~ 87 (297)
T 2e31_A 50 YLAELPEPLLLRVLAEL-PATELVQACRLVCLRWKELVD 87 (297)
T ss_dssp CTTSSCHHHHHHHHHTS-CHHHHHHTGGGTCHHHHHHHT
T ss_pred ChhhCCHHHHHHHHHcC-CHHHHHHHHHHHhHHHHHHhc
Confidence 45679999999999999 599999 99999999999984
No 150
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.50 E-value=0.00039 Score=62.05 Aligned_cols=41 Identities=17% Similarity=0.284 Sum_probs=25.5
Q ss_pred HhhCCCccEEecCCCCCCCH-HHHHHHHhhCCCCcEEEccccc
Q 046157 416 AILCPNLEVIDLSHCLGITE-EGIGEILKSCCEIKCLEIKRCR 457 (577)
Q Consensus 416 ~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~~~L~~L~l~~~~ 457 (577)
...+|+|+.|+++++ .++. .++...+..+++|+.|+|++|.
T Consensus 166 ~~~l~~L~~L~Ls~N-~l~~l~~l~~~~~~l~~L~~L~Ls~N~ 207 (267)
T 3rw6_A 166 EENIPELLSLNLSNN-RLYRLDDMSSIVQKAPNLKILNLSGNE 207 (267)
T ss_dssp HHHCTTCCEEECTTS-CCCCCGGGTTHHHHSTTCCEEECTTSC
T ss_pred HhhCCCCCEEECCCC-CCCCCccchhHHhhCCCCCEEECCCCc
Confidence 355777788887776 3433 2333445567777777777665
No 151
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.33 E-value=0.00062 Score=60.78 Aligned_cols=64 Identities=16% Similarity=0.180 Sum_probs=32.7
Q ss_pred hcCCCCCEEeecCCCCCCh-HHHHHHHhhCCCCCeEEeeeccCCCCcccccccCCCCccEEEcCCCC
Q 046157 340 KFLTSLNFIDLGFCAKLTN-STFFTILRECPLLSEIKMETTNLGLDDFTTPLVINPQVKSLHLARNG 405 (577)
Q Consensus 340 ~~~~~L~~L~l~~~~~~~~-~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 405 (577)
..+++|+.|+++++. ++. ..+......+++|+.|+|++|.+.....+..+..+ +|+.|++.+|+
T Consensus 167 ~~l~~L~~L~Ls~N~-l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l-~L~~L~L~~Np 231 (267)
T 3rw6_A 167 ENIPELLSLNLSNNR-LYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGL-KLEELWLDGNS 231 (267)
T ss_dssp HHCTTCCEEECTTSC-CCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTS-CCSEEECTTST
T ss_pred hhCCCCCEEECCCCC-CCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcccC-CcceEEccCCc
Confidence 345666666666543 221 12223334566666666666665543323333333 56666666655
No 152
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=97.26 E-value=4.3e-05 Score=73.96 Aligned_cols=53 Identities=11% Similarity=0.293 Sum_probs=23.9
Q ss_pred hCCCccEEecCCCCCCChhhHHHHHhhCCCCcEEEecCCCCCcHHHHHHHHHhCCCCcee
Q 046157 492 TCSRILHLDLDNCLNVTTSGVKEVVEHCRTLREINLRWCDEVNVDIVAWMVFSRPSLRKI 551 (577)
Q Consensus 492 ~~~~L~~L~l~~c~~l~~~~l~~~~~~~~~L~~L~l~~c~~~~~~~~~~~~~~~~~L~~l 551 (577)
.|.+|+.+.+... ++..+- ..+.+|++|+.+++... ++. ...-+..|++|+.+
T Consensus 341 ~c~~L~~i~lp~~--l~~I~~-~aF~~C~~L~~i~lp~~--~~~--~~~~F~~c~~L~~I 393 (394)
T 4fs7_A 341 GCTSLSNINFPLS--LRKIGA-NAFQGCINLKKVELPKR--LEQ--YRYDFEDTTKFKWI 393 (394)
T ss_dssp TCTTCCEECCCTT--CCEECT-TTBTTCTTCCEEEEEGG--GGG--GGGGBCTTCEEEEE
T ss_pred CCCCCCEEEECcc--ccEehH-HHhhCCCCCCEEEECCC--CEE--hhheecCCCCCcEE
Confidence 3555666655432 322221 12355666666666542 221 12234455655554
No 153
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=97.24 E-value=0.00023 Score=59.34 Aligned_cols=38 Identities=8% Similarity=0.028 Sum_probs=17.1
Q ss_pred hhCCCCcEEEccccccccccc--ccccCCCceEEEccCCCC
Q 046157 443 KSCCEIKCLEIKRCRAVFDLG--IDLELPKLEVLQASGSAL 481 (577)
Q Consensus 443 ~~~~~L~~L~l~~~~~l~~~~--~~~~~~~L~~L~l~~~~i 481 (577)
..+++|+.|++++|. ++... ....+++|+.|++++|.+
T Consensus 75 ~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~~ 114 (170)
T 3g39_A 75 DKLTQLTQLSLNDNQ-LKSIPRGAFDNLKSLTHIWLLNNPW 114 (170)
T ss_dssp TTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCB
T ss_pred cCCCCCCEEECCCCc-cCEeCHHHhcCCCCCCEEEeCCCCC
Confidence 344555555555554 22222 122444555555555443
No 154
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=97.17 E-value=0.00033 Score=58.62 Aligned_cols=14 Identities=7% Similarity=0.219 Sum_probs=6.7
Q ss_pred hCCCCcEEEccccc
Q 046157 444 SCCEIKCLEIKRCR 457 (577)
Q Consensus 444 ~~~~L~~L~l~~~~ 457 (577)
.+++|+.|++++|.
T Consensus 79 ~l~~L~~L~L~~N~ 92 (174)
T 2r9u_A 79 KLTQLTQLDLNDNH 92 (174)
T ss_dssp TCTTCCEEECCSSC
T ss_pred CcchhhEEECCCCc
Confidence 34445555554443
No 155
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=97.09 E-value=8.1e-05 Score=73.92 Aligned_cols=39 Identities=26% Similarity=0.123 Sum_probs=34.9
Q ss_pred CCCCCCChHHHHHHHHhcCCccchhhhHHhhHHHHhhhcc
Q 046157 3 ENPLDLPPECWELIFNSLNDQSHFESLSLVSHRFLSITNY 42 (577)
Q Consensus 3 ~~~~~LP~evl~~I~~~L~~~~~~~~~~~vcr~w~~~~~~ 42 (577)
|++..||+|++.+||+|| +.++++++++|||+|++++..
T Consensus 13 d~~~~lp~~~~~~i~~~l-~~~~l~~~~~v~~~w~~~~~~ 51 (464)
T 3v7d_B 13 DLITSLPFEISLKIFNYL-QFEDIINSLGVSQNWNKIIRK 51 (464)
T ss_dssp CHHHHSCHHHHHHHHTTS-CHHHHHHHHTTCHHHHHHHTT
T ss_pred CChHHCCHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHHcC
Confidence 455679999999999999 799999999999999998843
No 156
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=97.04 E-value=0.00031 Score=58.56 Aligned_cols=84 Identities=8% Similarity=-0.015 Sum_probs=37.7
Q ss_pred CCCCeEEeeeccCCCCcccccccCCCCccEEEcCCCCCCCHHHHHHHHhhCCCccEEecCCCCCCCHHHHHHHHhhCCCC
Q 046157 369 PLLSEIKMETTNLGLDDFTTPLVINPQVKSLHLARNGNLSDESLKKLAILCPNLEVIDLSHCLGITEEGIGEILKSCCEI 448 (577)
Q Consensus 369 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L 448 (577)
++|+.|++++|.+.... ...+..+++|+.|+++++. ++.... .....+++|++|+++++ .++... ...+..+++|
T Consensus 30 ~~l~~L~L~~N~i~~~~-~~~~~~l~~L~~L~Ls~N~-l~~l~~-~~f~~l~~L~~L~L~~N-~l~~~~-~~~~~~l~~L 104 (170)
T 3g39_A 30 TTTQVLYLYDNQITKLE-PGVFDRLTQLTRLDLDNNQ-LTVLPA-GVFDKLTQLTQLSLNDN-QLKSIP-RGAFDNLKSL 104 (170)
T ss_dssp TTCSEEECCSSCCCCCC-TTTTTTCTTCSEEECCSSC-CCCCCT-TTTTTCTTCCEEECCSS-CCCCCC-TTTTTTCTTC
T ss_pred CCCcEEEcCCCcCCccC-hhhhcCcccCCEEECCCCC-cCccCh-hhccCCCCCCEEECCCC-ccCEeC-HHHhcCCCCC
Confidence 34444444444443322 2334445555555555543 322110 11123456666666555 232211 1124456666
Q ss_pred cEEEccccc
Q 046157 449 KCLEIKRCR 457 (577)
Q Consensus 449 ~~L~l~~~~ 457 (577)
+.|++++|+
T Consensus 105 ~~L~L~~N~ 113 (170)
T 3g39_A 105 THIWLLNNP 113 (170)
T ss_dssp CEEECCSSC
T ss_pred CEEEeCCCC
Confidence 666666665
No 157
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=97.01 E-value=9.7e-05 Score=71.45 Aligned_cols=56 Identities=18% Similarity=0.304 Sum_probs=26.2
Q ss_pred hCCCccEEecCCCCCCCHHHHHHHHhhCCCCcEEEccccccccccc--ccccCCCceEEEccC
Q 046157 418 LCPNLEVIDLSHCLGITEEGIGEILKSCCEIKCLEIKRCRAVFDLG--IDLELPKLEVLQASG 478 (577)
Q Consensus 418 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~--~~~~~~~L~~L~l~~ 478 (577)
.|.+|+.+++... ++..+ ...+.+|.+|+.+.+..+ ++..+ ....|++|+.+++..
T Consensus 318 ~c~~L~~i~lp~~--v~~I~-~~aF~~c~~L~~i~lp~~--l~~I~~~aF~~C~~L~~i~lp~ 375 (394)
T 4fs7_A 318 SCTSLVSIDLPYL--VEEIG-KRSFRGCTSLSNINFPLS--LRKIGANAFQGCINLKKVELPK 375 (394)
T ss_dssp TCTTCCEECCCTT--CCEEC-TTTTTTCTTCCEECCCTT--CCEECTTTBTTCTTCCEEEEEG
T ss_pred CCCCCCEEEeCCc--ccEEh-HHhccCCCCCCEEEECcc--ccEehHHHhhCCCCCCEEEECC
Confidence 3555666655431 22111 112455666666666433 22222 233566666666654
No 158
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=96.97 E-value=0.00043 Score=57.95 Aligned_cols=84 Identities=7% Similarity=-0.005 Sum_probs=43.0
Q ss_pred CCCCeEEeeeccCCCCcccccccCCCCccEEEcCCCCCCCHHHHHHHHhhCCCccEEecCCCCCCCHHHHHHHHhhCCCC
Q 046157 369 PLLSEIKMETTNLGLDDFTTPLVINPQVKSLHLARNGNLSDESLKKLAILCPNLEVIDLSHCLGITEEGIGEILKSCCEI 448 (577)
Q Consensus 369 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L 448 (577)
++|+.|++++|.+.... ...+..+++|+.|+++++. ++.... .....+++|+.|+++++ .++... ...+..+++|
T Consensus 33 ~~L~~L~Ls~N~l~~~~-~~~~~~l~~L~~L~Ls~N~-l~~i~~-~~~~~l~~L~~L~L~~N-~l~~l~-~~~~~~l~~L 107 (174)
T 2r9u_A 33 TDKQRLWLNNNQITKLE-PGVFDHLVNLQQLYFNSNK-LTAIPT-GVFDKLTQLTQLDLNDN-HLKSIP-RGAFDNLKSL 107 (174)
T ss_dssp TTCSEEECCSSCCCCCC-TTTTTTCTTCCEEECCSSC-CCCCCT-TTTTTCTTCCEEECCSS-CCCCCC-TTTTTTCTTC
T ss_pred CCCcEEEeCCCCccccC-HHHhcCCcCCCEEECCCCC-CCccCh-hHhCCcchhhEEECCCC-ccceeC-HHHhccccCC
Confidence 45666666665554332 3345566667777766654 332111 11234567777777766 333211 1123445666
Q ss_pred cEEEccccc
Q 046157 449 KCLEIKRCR 457 (577)
Q Consensus 449 ~~L~l~~~~ 457 (577)
+.|++++|+
T Consensus 108 ~~L~L~~N~ 116 (174)
T 2r9u_A 108 THIYLYNNP 116 (174)
T ss_dssp SEEECCSSC
T ss_pred CEEEeCCCC
Confidence 666666655
No 159
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=96.93 E-value=0.00031 Score=69.21 Aligned_cols=39 Identities=10% Similarity=0.071 Sum_probs=35.9
Q ss_pred CCCCCCCChHHHHHHHHhcCCccchhhhHHhhHHHHhhhc
Q 046157 2 TENPLDLPPECWELIFNSLNDQSHFESLSLVSHRFLSITN 41 (577)
Q Consensus 2 ~~~~~~LP~evl~~I~~~L~~~~~~~~~~~vcr~w~~~~~ 41 (577)
.|++..||+|++.+||+|| +.+++.++++|||+|+.++.
T Consensus 16 ~d~~~~lp~e~~~~i~~~l-~~~~l~~~~~v~~~~~~~~~ 54 (445)
T 2ovr_B 16 RDFISLLPKELALYVLSFL-EPKDLLQAAQTCRYWRILAE 54 (445)
T ss_dssp CSTTTSSCHHHHHHHHTTS-CHHHHHHHTTSCHHHHHHHT
T ss_pred CChhHHCCHHHHHHHHHhC-CHHHHHHHHHHhHHHHhhcC
Confidence 4677889999999999999 79999999999999999884
No 160
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=96.89 E-value=0.00017 Score=70.98 Aligned_cols=38 Identities=24% Similarity=0.304 Sum_probs=34.4
Q ss_pred CCCCCCChH----HHHHHHHhcCCccchhhhHHhhHHHHhhhc
Q 046157 3 ENPLDLPPE----CWELIFNSLNDQSHFESLSLVSHRFLSITN 41 (577)
Q Consensus 3 ~~~~~LP~e----vl~~I~~~L~~~~~~~~~~~vcr~w~~~~~ 41 (577)
|++..||+| |+.+||+|| +.+++.++++|||+|+.++.
T Consensus 9 d~~~~lp~e~~~~~~~~i~~~l-~~~~l~~~~~v~~~w~~~~~ 50 (435)
T 1p22_A 9 DFITALPARGLDHIAENILSYL-DAKSLCAAELVCKEWYRVTS 50 (435)
T ss_dssp CHHHHTGGGTCHHHHHHHHTTC-CHHHHHHHHHHCHHHHHHHH
T ss_pred ChHHHCCcchHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHhc
Confidence 455679999 999999999 79999999999999999884
No 161
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=96.59 E-value=0.0026 Score=61.25 Aligned_cols=15 Identities=40% Similarity=0.589 Sum_probs=7.8
Q ss_pred hhhhcCCCEEEcCCC
Q 046157 262 FAYARGLCEIDLSNS 276 (577)
Q Consensus 262 ~~~~~~L~~L~l~~~ 276 (577)
|.+|++|+.+++..+
T Consensus 176 F~~c~~L~~l~l~~n 190 (401)
T 4fdw_A 176 FYYCYNLKKADLSKT 190 (401)
T ss_dssp TTTCTTCCEEECTTS
T ss_pred hhCcccCCeeecCCC
Confidence 445555555555543
No 162
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=96.50 E-value=0.00056 Score=65.84 Aligned_cols=106 Identities=12% Similarity=0.132 Sum_probs=49.6
Q ss_pred HhhCCCCcEEEccccccc------ccccccccCCCceEEEccCCCCCHHHHHHHHHhCCCccEEecCCCCCCChhhHHHH
Q 046157 442 LKSCCEIKCLEIKRCRAV------FDLGIDLELPKLEVLQASGSALNDHALKMIANTCSRILHLDLDNCLNVTTSGVKEV 515 (577)
Q Consensus 442 ~~~~~~L~~L~l~~~~~l------~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~c~~l~~~~l~~~ 515 (577)
+.+|++|+.+.+.++... -.......|++|+.+.+..+ ++..+-. ....|.+|+.+.+.+. ++..+-. .
T Consensus 267 F~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~~-i~~I~~~-aF~~c~~L~~l~lp~~--l~~I~~~-a 341 (401)
T 4fdw_A 267 FYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPES-IRILGQG-LLGGNRKVTQLTIPAN--VTQINFS-A 341 (401)
T ss_dssp TTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCTT-CCEECTT-TTTTCCSCCEEEECTT--CCEECTT-S
T ss_pred hhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCCc-eEEEhhh-hhcCCCCccEEEECcc--ccEEcHH-h
Confidence 445666666666554321 01112335666666666542 2221111 1224677777777542 4332211 2
Q ss_pred HhhCCCCcEEEecCCCCCcHHHHHHHHHhCC-CCceeccCC
Q 046157 516 VEHCRTLREINLRWCDEVNVDIVAWMVFSRP-SLRKIIPPC 555 (577)
Q Consensus 516 ~~~~~~L~~L~l~~c~~~~~~~~~~~~~~~~-~L~~l~~~~ 555 (577)
+.+| +|+.+.+.+..-.. .....+..+| .++.|.++.
T Consensus 342 F~~~-~L~~l~l~~n~~~~--l~~~~F~~~~~~l~~l~vp~ 379 (401)
T 4fdw_A 342 FNNT-GIKEVKVEGTTPPQ--VFEKVWYGFPDDITVIRVPA 379 (401)
T ss_dssp SSSS-CCCEEEECCSSCCB--CCCSSCCCSCTTCCEEEECG
T ss_pred CCCC-CCCEEEEcCCCCcc--cccccccCCCCCccEEEeCH
Confidence 3566 77777777642211 0011222343 566777763
No 163
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=96.03 E-value=0.0013 Score=63.55 Aligned_cols=121 Identities=12% Similarity=0.220 Sum_probs=66.1
Q ss_pred hCCCccEEecCCCCCCCHHHHHHHHhhCCCCcEEEccccccccccc--ccccCCCceEEEccCC--CCCHHHHHHHHHhC
Q 046157 418 LCPNLEVIDLSHCLGITEEGIGEILKSCCEIKCLEIKRCRAVFDLG--IDLELPKLEVLQASGS--ALNDHALKMIANTC 493 (577)
Q Consensus 418 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~--~~~~~~~L~~L~l~~~--~i~~~~~~~l~~~~ 493 (577)
.|.+|+.+.+... +...+ ...+.+|++|+.+.+... ++..+ ....|.+|+.+++..+ .|.+. ....|
T Consensus 263 ~c~~L~~i~lp~~--~~~I~-~~aF~~c~~L~~i~l~~~--i~~I~~~aF~~c~~L~~i~lp~~v~~I~~~----aF~~C 333 (394)
T 4gt6_A 263 SCAYLASVKMPDS--VVSIG-TGAFMNCPALQDIEFSSR--ITELPESVFAGCISLKSIDIPEGITQILDD----AFAGC 333 (394)
T ss_dssp TCSSCCEEECCTT--CCEEC-TTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCEEECCTTCCEECTT----TTTTC
T ss_pred ecccccEEecccc--cceec-CcccccccccccccCCCc--ccccCceeecCCCCcCEEEeCCcccEehHh----HhhCC
Confidence 4677777777543 21111 112556788888877532 33332 3346788888888653 23322 12357
Q ss_pred CCccEEecCCCCCCChhhHHHHHhhCCCCcEEEecCCCCCcHHHHHHHHHhCCCCceeccCC
Q 046157 494 SRILHLDLDNCLNVTTSGVKEVVEHCRTLREINLRWCDEVNVDIVAWMVFSRPSLRKIIPPC 555 (577)
Q Consensus 494 ~~L~~L~l~~c~~l~~~~l~~~~~~~~~L~~L~l~~c~~~~~~~~~~~~~~~~~L~~l~~~~ 555 (577)
.+|+.+.+... ++..+- ..+.+|++|+.+++.+. .. .. ..+..|..|+.+.++.
T Consensus 334 ~~L~~i~ip~s--v~~I~~-~aF~~C~~L~~i~~~~~--~~--~~-~~~~~~~~L~~i~i~~ 387 (394)
T 4gt6_A 334 EQLERIAIPSS--VTKIPE-SAFSNCTALNNIEYSGS--RS--QW-NAISTDSGLQNLPVAP 387 (394)
T ss_dssp TTCCEEEECTT--CCBCCG-GGGTTCTTCCEEEESSC--HH--HH-HTCBCCCCC-------
T ss_pred CCCCEEEECcc--cCEEhH-hHhhCCCCCCEEEECCc--ee--eh-hhhhccCCCCEEEeCC
Confidence 88999988542 443332 23578999999988873 11 12 2345678888888764
No 164
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=95.95 E-value=0.0059 Score=57.70 Aligned_cols=88 Identities=15% Similarity=0.106 Sum_probs=43.1
Q ss_pred ccCCCCccEEEcCC-CCCCCHHHHHHHHhhCCCccEEecCCCCCCCHHHHHHHHhhCCCCcEEEccccccccccc-cccc
Q 046157 390 LVINPQVKSLHLAR-NGNLSDESLKKLAILCPNLEVIDLSHCLGITEEGIGEILKSCCEIKCLEIKRCRAVFDLG-IDLE 467 (577)
Q Consensus 390 ~~~~~~L~~L~l~~-~~~l~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~-~~~~ 467 (577)
+..+++|+.|+|++ +. +...... ....+++|+.|+++++ .++... ...+.++++|+.|+|++|. +.... ..+.
T Consensus 27 l~~~~~L~~L~l~~~n~-l~~~~~~-~~~~l~~L~~L~l~~N-~l~~~~-~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~ 101 (347)
T 2ifg_A 27 LPGAENLTELYIENQQH-LQHLELR-DLRGLGELRNLTIVKS-GLRFVA-PDAFHFTPRLSRLNLSFNA-LESLSWKTVQ 101 (347)
T ss_dssp SCSCSCCSEEECCSCSS-CCEECGG-GSCSCCCCSEEECCSS-CCCEEC-TTGGGSCSCCCEEECCSSC-CSCCCSTTTC
T ss_pred CCCCCCeeEEEccCCCC-CCCcChh-HhccccCCCEEECCCC-ccceeC-HHHhcCCcCCCEEeCCCCc-cceeCHHHcc
Confidence 44455556666654 32 3321111 1123566666666665 343211 1124566777777777765 33322 1122
Q ss_pred CCCceEEEccCCCCC
Q 046157 468 LPKLEVLQASGSALN 482 (577)
Q Consensus 468 ~~~L~~L~l~~~~i~ 482 (577)
...|+.|++.+|.+.
T Consensus 102 ~~~L~~l~l~~N~~~ 116 (347)
T 2ifg_A 102 GLSLQELVLSGNPLH 116 (347)
T ss_dssp SCCCCEEECCSSCCC
T ss_pred cCCceEEEeeCCCcc
Confidence 223777777776654
No 165
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=95.04 E-value=0.014 Score=55.06 Aligned_cols=84 Identities=18% Similarity=0.073 Sum_probs=55.5
Q ss_pred hCCCccEEecCCCCCCCHHHHHHHHhhCCCCcEEEccccccccccc--ccccCCCceEEEccCCCCCHHHHHHHHHhCCC
Q 046157 418 LCPNLEVIDLSHCLGITEEGIGEILKSCCEIKCLEIKRCRAVFDLG--IDLELPKLEVLQASGSALNDHALKMIANTCSR 495 (577)
Q Consensus 418 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~--~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~ 495 (577)
.+++|+.|+++++..++... ...+..+++|+.|+|++|. +.... ....+++|+.|+|++|.++...... .. ...
T Consensus 29 ~~~~L~~L~l~~~n~l~~~~-~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~-~~-~~~ 104 (347)
T 2ifg_A 29 GAENLTELYIENQQHLQHLE-LRDLRGLGELRNLTIVKSG-LRFVAPDAFHFTPRLSRLNLSFNALESLSWKT-VQ-GLS 104 (347)
T ss_dssp SCSCCSEEECCSCSSCCEEC-GGGSCSCCCCSEEECCSSC-CCEECTTGGGSCSCCCEEECCSSCCSCCCSTT-TC-SCC
T ss_pred CCCCeeEEEccCCCCCCCcC-hhHhccccCCCEEECCCCc-cceeCHHHhcCCcCCCEEeCCCCccceeCHHH-cc-cCC
Confidence 45689999998622554322 1235678899999999986 55443 3457889999999998876422111 11 224
Q ss_pred ccEEecCCCC
Q 046157 496 ILHLDLDNCL 505 (577)
Q Consensus 496 L~~L~l~~c~ 505 (577)
|+.|++.+++
T Consensus 105 L~~l~l~~N~ 114 (347)
T 2ifg_A 105 LQELVLSGNP 114 (347)
T ss_dssp CCEEECCSSC
T ss_pred ceEEEeeCCC
Confidence 8889888765
No 166
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=79.89 E-value=1.2 Score=42.45 Aligned_cols=12 Identities=8% Similarity=0.564 Sum_probs=7.0
Q ss_pred hCCCccEEecCC
Q 046157 492 TCSRILHLDLDN 503 (577)
Q Consensus 492 ~~~~L~~L~l~~ 503 (577)
+|.+|+.+.+.+
T Consensus 355 ~C~~L~~i~~~~ 366 (394)
T 4gt6_A 355 NCTALNNIEYSG 366 (394)
T ss_dssp TCTTCCEEEESS
T ss_pred CCCCCCEEEECC
Confidence 456666666654
No 167
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=78.25 E-value=0.63 Score=44.15 Aligned_cols=12 Identities=25% Similarity=0.692 Sum_probs=6.2
Q ss_pred hhCCCCcEEEec
Q 046157 517 EHCRTLREINLR 528 (577)
Q Consensus 517 ~~~~~L~~L~l~ 528 (577)
.+|++|+.+.+.
T Consensus 330 ~~C~~L~~i~ip 341 (379)
T 4h09_A 330 KNCKALSTISYP 341 (379)
T ss_dssp TTCTTCCCCCCC
T ss_pred hCCCCCCEEEEC
Confidence 445555555543
No 168
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=67.60 E-value=4.9 Score=30.96 Aligned_cols=35 Identities=23% Similarity=0.212 Sum_probs=16.5
Q ss_pred CCCeEEeeeccCCCCcccccccCCCCccEEEcCCCC
Q 046157 370 LLSEIKMETTNLGLDDFTTPLVINPQVKSLHLARNG 405 (577)
Q Consensus 370 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 405 (577)
+|+.|+|++|.+..-. ...+..+++|+.|+|.+|+
T Consensus 32 ~l~~L~Ls~N~l~~l~-~~~f~~l~~L~~L~L~~NP 66 (130)
T 3rfe_A 32 DTTELVLTGNNLTALP-PGLLDALPALRTAHLGANP 66 (130)
T ss_dssp TCSEEECTTSCCSSCC-TTTGGGCTTCCEEECCSSC
T ss_pred CCCEEECCCCcCCccC-hhhhhhccccCEEEecCCC
Confidence 4555555555543322 2233444455555555544
No 169
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=60.11 E-value=4 Score=38.49 Aligned_cols=11 Identities=9% Similarity=0.440 Sum_probs=5.5
Q ss_pred hCCCccEEecC
Q 046157 492 TCSRILHLDLD 502 (577)
Q Consensus 492 ~~~~L~~L~l~ 502 (577)
+|.+|+.+.+.
T Consensus 331 ~C~~L~~i~ip 341 (379)
T 4h09_A 331 NCKALSTISYP 341 (379)
T ss_dssp TCTTCCCCCCC
T ss_pred CCCCCCEEEEC
Confidence 34555555553
No 170
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=54.61 E-value=12 Score=28.65 Aligned_cols=10 Identities=10% Similarity=0.039 Sum_probs=4.6
Q ss_pred CccEEecCCC
Q 046157 421 NLEVIDLSHC 430 (577)
Q Consensus 421 ~L~~L~l~~~ 430 (577)
+|+.|+|+++
T Consensus 32 ~l~~L~Ls~N 41 (130)
T 3rfe_A 32 DTTELVLTGN 41 (130)
T ss_dssp TCSEEECTTS
T ss_pred CCCEEECCCC
Confidence 3444444443
Done!