Query 046158
Match_columns 542
No_of_seqs 248 out of 710
Neff 5.5
Searched_HMMs 46136
Date Fri Mar 29 09:16:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046158.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/046158hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03514 GRAS: GRAS domain fam 100.0 6E-114 1E-118 908.1 40.1 371 163-537 1-374 (374)
2 PRK15451 tRNA cmo(5)U34 methyl 96.6 0.12 2.5E-06 52.0 17.1 191 247-490 34-226 (247)
3 TIGR02752 MenG_heptapren 2-hep 95.7 1.5 3.2E-05 43.0 19.2 180 261-492 35-216 (231)
4 TIGR00740 methyltransferase, p 95.4 0.35 7.6E-06 48.0 13.6 167 271-489 53-222 (239)
5 PLN02233 ubiquinone biosynthes 94.7 3 6.5E-05 42.4 18.4 112 263-401 65-176 (261)
6 PRK14103 trans-aconitate 2-met 94.1 1 2.2E-05 45.2 13.4 114 262-414 20-133 (255)
7 PRK06202 hypothetical protein; 94.0 1.5 3.2E-05 43.4 14.1 144 233-405 22-165 (232)
8 TIGR02716 C20_methyl_CrtF C-20 93.0 1.4 3E-05 45.5 12.5 116 260-407 138-255 (306)
9 PF13489 Methyltransf_23: Meth 91.8 1.6 3.6E-05 39.3 10.1 97 269-409 20-118 (161)
10 TIGR01934 MenG_MenH_UbiE ubiqu 90.7 16 0.00035 34.9 18.4 113 260-404 28-140 (223)
11 PF13847 Methyltransf_31: Meth 90.6 1.9 4.2E-05 39.5 9.4 105 270-404 2-107 (152)
12 PF01209 Ubie_methyltran: ubiE 89.4 2.4 5.3E-05 42.6 9.7 110 262-401 38-147 (233)
13 PF13649 Methyltransf_25: Meth 87.3 2.1 4.7E-05 36.4 6.8 94 275-396 1-95 (101)
14 PRK01683 trans-aconitate 2-met 87.3 27 0.00059 34.8 15.7 112 259-407 19-130 (258)
15 PRK00216 ubiE ubiquinone/menaq 86.0 29 0.00063 33.5 14.8 43 263-311 43-85 (239)
16 COG2226 UbiE Methylase involve 86.0 43 0.00093 34.2 17.8 156 247-439 26-186 (238)
17 PLN02396 hexaprenyldihydroxybe 85.9 22 0.00047 37.7 14.7 97 272-403 132-231 (322)
18 PRK08317 hypothetical protein; 84.8 38 0.00082 32.5 16.5 42 263-310 11-52 (241)
19 PF00891 Methyltransf_2: O-met 82.8 13 0.00029 36.7 11.0 44 261-311 90-133 (241)
20 PLN02336 phosphoethanolamine N 81.8 40 0.00086 37.0 15.2 113 259-404 254-366 (475)
21 PRK05785 hypothetical protein; 81.6 59 0.0013 32.3 15.2 92 272-404 52-144 (226)
22 TIGR00477 tehB tellurite resis 81.5 16 0.00034 35.4 10.6 111 258-402 17-128 (195)
23 COG2227 UbiG 2-polyprenyl-3-me 80.2 4.6 9.9E-05 41.3 6.5 99 270-402 58-156 (243)
24 PF12847 Methyltransf_18: Meth 78.5 4.5 9.8E-05 34.5 5.2 103 274-404 4-108 (112)
25 PF09243 Rsm22: Mitochondrial 78.2 18 0.00038 37.3 10.3 139 254-424 12-156 (274)
26 smart00138 MeTrc Methyltransfe 77.6 6 0.00013 40.4 6.7 52 269-326 97-150 (264)
27 PRK11207 tellurite resistance 77.5 30 0.00065 33.5 11.2 109 260-402 19-129 (197)
28 PF03291 Pox_MCEL: mRNA cappin 76.8 17 0.00037 38.7 10.0 136 256-409 43-189 (331)
29 PRK11036 putative S-adenosyl-L 76.1 59 0.0013 32.6 13.3 111 262-404 36-146 (255)
30 PLN02244 tocopherol O-methyltr 75.2 42 0.00091 35.5 12.5 97 271-401 118-217 (340)
31 PF08241 Methyltransf_11: Meth 74.8 10 0.00022 30.7 6.2 92 276-403 1-93 (95)
32 TIGR03438 probable methyltrans 72.6 46 0.001 34.6 11.8 109 273-405 65-176 (301)
33 PTZ00098 phosphoethanolamine N 70.3 94 0.002 31.6 13.2 47 256-310 37-83 (263)
34 PLN02585 magnesium protoporphy 70.2 46 0.00099 35.2 11.2 103 271-405 144-248 (315)
35 PLN02336 phosphoethanolamine N 69.4 73 0.0016 35.0 13.1 113 261-405 27-140 (475)
36 PRK12335 tellurite resistance 68.5 48 0.001 34.1 10.8 95 274-402 123-218 (287)
37 TIGR02072 BioC biotin biosynth 67.8 32 0.0007 33.0 8.9 99 271-405 34-133 (240)
38 PRK10258 biotin biosynthesis p 64.7 1.5E+02 0.0033 29.3 14.0 44 259-311 30-73 (251)
39 TIGR02021 BchM-ChlM magnesium 62.7 1.2E+02 0.0025 29.5 11.8 59 256-329 38-98 (219)
40 TIGR00138 gidB 16S rRNA methyl 61.0 57 0.0012 31.4 9.1 97 272-406 43-141 (181)
41 PRK05134 bifunctional 3-demeth 60.9 1.7E+02 0.0037 28.5 15.2 101 269-403 46-147 (233)
42 PRK11873 arsM arsenite S-adeno 58.9 2E+02 0.0044 28.9 13.7 96 273-401 79-177 (272)
43 TIGR03587 Pse_Me-ase pseudamin 57.8 1.5E+02 0.0032 29.1 11.6 99 274-408 46-144 (204)
44 PRK15068 tRNA mo(5)U34 methylt 57.1 2.6E+02 0.0056 29.5 15.3 139 233-403 71-222 (322)
45 TIGR02081 metW methionine bios 56.6 1.1E+02 0.0025 29.1 10.4 39 262-310 6-44 (194)
46 COG1341 Predicted GTPase or GT 55.0 1.3E+02 0.0029 33.0 11.5 157 254-459 89-254 (398)
47 PRK15001 SAM-dependent 23S rib 52.4 1.4E+02 0.0029 32.6 11.1 109 274-407 231-340 (378)
48 COG2230 Cfa Cyclopropane fatty 52.4 2.7E+02 0.0058 29.3 12.8 116 259-407 60-178 (283)
49 TIGR03439 methyl_EasF probable 52.4 1.8E+02 0.0039 30.9 11.8 140 273-432 78-233 (319)
50 PRK00274 ksgA 16S ribosomal RN 51.6 61 0.0013 33.1 8.0 56 247-311 13-73 (272)
51 PF02353 CMAS: Mycolic acid cy 50.1 1.3E+02 0.0028 31.1 10.1 110 260-402 51-161 (273)
52 PF03848 TehB: Tellurite resis 49.1 2.2E+02 0.0048 28.1 11.1 109 261-403 20-129 (192)
53 PRK11705 cyclopropane fatty ac 48.8 1.8E+02 0.0039 31.5 11.4 54 261-328 157-210 (383)
54 PRK09489 rsmC 16S ribosomal RN 47.3 2.5E+02 0.0055 29.9 12.1 106 274-408 199-304 (342)
55 PRK06922 hypothetical protein; 46.9 1.3E+02 0.0028 35.3 10.3 111 272-406 419-537 (677)
56 PF13679 Methyltransf_32: Meth 44.7 56 0.0012 29.9 5.9 41 267-311 21-62 (141)
57 TIGR00452 methyltransferase, p 43.1 2.5E+02 0.0053 29.8 11.1 41 262-310 112-152 (314)
58 PRK10909 rsmD 16S rRNA m(2)G96 40.3 3.7E+02 0.008 26.4 11.6 106 273-411 55-163 (199)
59 TIGR00091 tRNA (guanine-N(7)-) 40.2 1.6E+02 0.0034 28.3 8.5 43 273-328 18-60 (194)
60 TIGR02469 CbiT precorrin-6Y C5 39.5 1.1E+02 0.0023 26.1 6.6 31 274-311 22-52 (124)
61 COG4106 Tam Trans-aconitate me 39.2 76 0.0017 32.5 6.1 111 267-415 26-137 (257)
62 PRK00107 gidB 16S rRNA methylt 38.7 3.8E+02 0.0082 26.0 12.5 97 272-406 46-144 (187)
63 PF11020 DUF2610: Domain of un 38.0 36 0.00077 29.2 3.1 22 319-340 48-69 (82)
64 smart00650 rADc Ribosomal RNA 37.7 2E+02 0.0044 26.8 8.6 41 262-311 4-44 (169)
65 PRK07580 Mg-protoporphyrin IX 36.2 4E+02 0.0087 25.6 11.3 44 270-328 62-105 (230)
66 PRK11088 rrmA 23S rRNA methylt 35.2 1.9E+02 0.0041 29.4 8.5 71 235-311 51-121 (272)
67 PF13552 DUF4127: Protein of u 34.5 71 0.0015 36.0 5.7 62 372-436 78-147 (497)
68 smart00828 PKS_MT Methyltransf 33.6 2.9E+02 0.0063 26.6 9.3 98 274-403 2-100 (224)
69 TIGR01716 RGG_Cterm transcript 33.2 84 0.0018 30.4 5.4 55 163-217 127-182 (220)
70 KOG2324 Prolyl-tRNA synthetase 32.3 63 0.0014 35.2 4.5 39 324-363 375-413 (457)
71 TIGR03534 RF_mod_PrmC protein- 31.0 2.4E+02 0.0053 27.5 8.3 78 271-372 87-165 (251)
72 TIGR02129 hisA_euk phosphoribo 30.5 62 0.0013 33.4 4.1 27 268-298 50-76 (253)
73 PLN02446 (5-phosphoribosyl)-5- 29.9 60 0.0013 33.7 3.9 27 268-295 55-81 (262)
74 TIGR00537 hemK_rel_arch HemK-r 29.6 4.7E+02 0.01 24.4 11.6 41 274-329 22-62 (179)
75 TIGR03183 DNA_S_dndC putative 29.3 1.4E+02 0.0031 33.3 6.9 81 261-345 3-91 (447)
76 PF07521 RMMBL: RNA-metabolisi 29.1 1.2E+02 0.0027 22.4 4.5 37 363-404 1-37 (43)
77 PF05175 MTS: Methyltransferas 28.9 1.9E+02 0.0041 27.2 6.9 119 258-404 18-137 (170)
78 PF07522 DRMBL: DNA repair met 27.0 2.4E+02 0.0052 24.7 6.8 36 361-406 71-106 (110)
79 PLN02490 MPBQ/MSBQ methyltrans 26.9 4.8E+02 0.01 28.0 10.2 33 271-310 113-145 (340)
80 PLN02232 ubiquinone biosynthes 26.5 5.3E+02 0.011 24.0 12.7 30 364-401 45-75 (160)
81 COG2242 CobL Precorrin-6B meth 25.8 1.2E+02 0.0025 30.1 4.8 52 265-332 28-82 (187)
82 PRK00050 16S rRNA m(4)C1402 me 25.6 1.7E+02 0.0036 30.9 6.4 107 262-389 10-122 (296)
83 PTZ00338 dimethyladenosine tra 24.7 3.1E+02 0.0067 28.7 8.1 85 263-372 28-112 (294)
84 PRK14968 putative methyltransf 24.3 5.6E+02 0.012 23.5 10.5 42 272-328 24-65 (188)
85 PRK14896 ksgA 16S ribosomal RN 24.3 3.9E+02 0.0084 27.0 8.6 46 257-311 11-60 (258)
86 PF05582 Peptidase_U57: YabG p 23.7 75 0.0016 33.4 3.3 39 388-426 144-195 (287)
87 COG1500 Predicted exosome subu 23.6 2.7E+02 0.0059 28.5 7.0 79 425-506 71-152 (234)
88 TIGR00755 ksgA dimethyladenosi 22.2 6.4E+02 0.014 25.2 9.6 41 261-310 19-59 (253)
89 TIGR01626 ytfJ_HI0045 conserve 22.0 2.3E+02 0.005 27.8 6.1 89 271-372 59-158 (184)
90 KOG1165 Casein kinase (serine/ 21.4 50 0.0011 35.9 1.5 14 268-281 163-176 (449)
91 PRK04148 hypothetical protein; 21.2 2.6E+02 0.0055 26.2 6.0 41 263-311 8-48 (134)
92 COG3457 Predicted amino acid r 20.8 5.7E+02 0.012 27.7 9.0 161 253-418 98-274 (353)
93 cd05296 GH4_P_beta_glucosidase 20.7 4.1E+02 0.009 29.3 8.5 52 287-345 14-67 (419)
94 PRK10867 signal recognition pa 20.5 6.7E+02 0.014 27.9 10.0 53 165-217 29-88 (433)
95 TIGR02855 spore_yabG sporulati 20.5 95 0.0021 32.5 3.2 39 388-426 143-194 (283)
96 COG2942 N-acyl-D-glucosamine 2 20.3 8.4E+02 0.018 26.9 10.4 88 238-345 183-285 (388)
97 PRK00121 trmB tRNA (guanine-N( 20.2 7.9E+02 0.017 23.7 10.3 34 271-311 40-73 (202)
98 PRK03646 dadX alanine racemase 20.2 1.3E+02 0.0028 32.3 4.3 36 271-310 117-157 (355)
No 1
>PF03514 GRAS: GRAS domain family; InterPro: IPR005202 Sequence analysis of the products of the GRAS (GAI, RGA, SCR) gene family indicates that they share a variable N terminus and a highly conserved C terminus that contains five recognizable motifs []. Proteins in the GRAS family are transcription factors that seem to be involved in development and other processes. Mutation of the SCARECROW (SCR) gene results in a radial pattern defect, loss of a ground tissue layer, in the root. The PAT1 protein is involved in phytochrome A signal transduction []. GRAS proteins contain a conserved region of about 350 amino acids that can be divided in 5 motifs, found in the following order: leucine heptad repeat I, the VHIID motif, leucine heptad repeat II, the PFYRE motif and the SAW motif [, ]. Plant specific GRAS proteins have parallels in their motif structure to the animal Signal Transducers and Activators of Transcription (STAT) family of proteins [] which suggests also some parallels in their functions.
Probab=100.00 E-value=6.3e-114 Score=908.15 Aligned_cols=371 Identities=41% Similarity=0.749 Sum_probs=357.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHHhhccCCCCCccccccCCCCCC---HHHHH
Q 046158 163 LRTLLILCAQAVSSNDYRTANELLKQIRQHSSLTGDGSQRLAHWFANGLEARMAGSGTGTKSFLMSLAPRKS---AADML 239 (542)
Q Consensus 163 L~~LL~~CA~AV~~~d~~~A~~lL~~I~~~sSp~Gd~~QRLA~yFaeAL~aRl~g~g~~~~~y~~l~s~~~s---~~~~l 239 (542)
|++||++||+||++||...|+.+|++|++++||+||++||||+||++||.+||.++++ +.|..+.....+ ..+.+
T Consensus 1 L~~lLl~cA~Av~~~~~~~A~~lL~~l~~~as~~g~~~qRla~yF~eAL~~Rl~~~~~--~~~~~~~~~~~~~~~~~~~~ 78 (374)
T PF03514_consen 1 LVQLLLACAEAVAAGDFARAQELLARLRQLASPTGDPMQRLAAYFAEALAARLSGSGP--GLYSALPPSSPSPSESSEQL 78 (374)
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhhHHHHHhccCc--ccccCCCCccccccchHHHH
Confidence 6899999999999999999999999999999999999999999999999999999887 888776544433 67899
Q ss_pred HHHHHHhhhCCcchhhHHHHhHHHHhhhccCCeeEEEEeecccccchHHHHHHHhcCCCCCCeEEEeeecCCCCCCCChH
Q 046158 240 KAYKVYLSACPFKKLAIMFTIKMIMKVSEKASTLHIVDFGIRYGFQWPMLIQFLSMRTGGPPRLRITGIELPQPGFRPAE 319 (542)
Q Consensus 240 ~Ay~~f~~~~Pf~kfa~~~ANqaIleA~~g~~~VHIIDfgI~~G~QWp~Liq~LA~R~gGPP~LRITgI~~p~~gf~p~~ 319 (542)
.||++|++.|||.||||||||||||||++|+++||||||||++|+|||+|||+||.|++|||+||||||+.|.++ +..
T Consensus 79 ~a~~~~~~~~P~~~fa~~taNqaIleA~~g~~~vHIID~~i~~G~QW~~LiqaLa~R~~gpp~LrIT~i~~~~~~--~~~ 156 (374)
T PF03514_consen 79 AAYQLFYELSPFLKFAHFTANQAILEAFEGERRVHIIDFGIGFGVQWPSLIQALASRPGGPPSLRITGIGPPNSG--SAD 156 (374)
T ss_pred HHHHHHHHHhhHHhhhhhchhHHHHHHhccCcceEEEeccCCcchHHHHHHHHHhcCCCCCCeEEEEeccCCCCC--cHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999887 688
Q ss_pred HHHHHHHHHHHHHHhcCCcEEEEEeeCCCcccccccccccCCCceEEEEecccccccccccccCCCchHHHHHHHHhhCC
Q 046158 320 RIEETGRRLLKYCQRFNVPFEYNCIASQNWETIQIEDLKINPDEVLAVNSLFRFKNLLDETVDVNCPRNSVLKLIRKIKP 399 (542)
Q Consensus 320 ~leetG~rL~~~A~~~gVpFeF~~I~~~~~E~l~~~dL~i~~~E~LaVN~~~~L~~L~des~~~~sprd~vL~~Ir~L~P 399 (542)
.+++||+||.+||+++||||||++|...+||++++++|++.+||+|||||+|+||||++++....+||+.||+.||+|+|
T Consensus 157 ~l~~~g~rL~~fA~~lgv~fef~~v~~~~~e~l~~~~l~~~~~E~laVn~~~~Lh~l~~~~~~~~~~~~~~L~~ir~L~P 236 (374)
T PF03514_consen 157 ELQETGRRLAEFARSLGVPFEFHPVVVESLEDLDPSMLRLRPGEALAVNCMFQLHHLLDESGALENPRDAFLRVIRSLNP 236 (374)
T ss_pred HHHHHHHHHHHHHHHcCccEEEEecccCchhhCCHHHhCccCCcEEEEEeehhhhhhccccccccchHHHHHHHHHhcCC
Confidence 99999999999999999999999976589999999999999999999999999999999988888899999999999999
Q ss_pred CEEEEEeecCCCCCCchHHHHHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHHHHHHhhcCCcccccccchhhHH
Q 046158 400 DIFVNSIVNGSYNAPFFVTRFREAIFHFSSLFDMFDTTMPREDPERLMFEREVYGREAMNVIACEGLERVERPETYKQWQ 479 (542)
Q Consensus 400 ~V~v~~e~~~~~nsp~F~~RF~EAL~~YsAlFDsLda~~pr~~~~R~~iE~~~~greI~NvVAcEG~eRvER~E~~~qW~ 479 (542)
+|||++|+|++||+|+|++||.|||+||+|+|||||+++|+++++|+.+|+.+||++|+|||||||.+|+||||++++|+
T Consensus 237 ~vvv~~E~ea~~n~~~F~~RF~eal~yYsalfdsle~~~~~~~~~r~~~E~~~~~~eI~niVa~eg~~R~eR~e~~~~W~ 316 (374)
T PF03514_consen 237 KVVVLVEQEADHNSPSFLERFREALHYYSALFDSLEACLPRDSEERLAVERLFFGREIMNIVACEGEERVERHERLEQWR 316 (374)
T ss_pred CEEEEEeecCCCCCCchHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhhhHHHHhhhcccccccccccchhHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCCccccCCHHHHHHHHHHHHhhcCCCcEEEecCCEEEEeECCceEEEEEccc
Q 046158 480 ARTIRAGFKQLPLNQELMEKLMGKLKAWYHKDFVIDQDNNWMLQGWKGRIVFASSCWV 537 (542)
Q Consensus 480 ~R~~rAGF~~~pLs~~~~~qa~~~l~~~y~~~f~v~ed~~~LllgWkgr~L~a~SaW~ 537 (542)
.||.+|||+++|||++++.||+.+|+.++++||.|+++++||+|||||+||+++|+||
T Consensus 317 ~r~~~aGF~~~~ls~~~~~qa~~ll~~~~~~g~~v~~~~~~l~L~Wk~~pL~~~SaWr 374 (374)
T PF03514_consen 317 RRMRRAGFRPVPLSEFAVSQAKLLLRKFPGDGYTVEEDGGCLLLGWKGRPLVAASAWR 374 (374)
T ss_pred HHHHhcCCeecCCCHHHHHHHHHHHhccCCCCeEEEEcCCEEEEEeCCcEEEEEeCcC
Confidence 9999999999999999999999999986668999999999999999999999999997
No 2
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=96.62 E-value=0.12 Score=52.00 Aligned_cols=191 Identities=16% Similarity=0.156 Sum_probs=97.3
Q ss_pred hhCCcchhhHHHHhHHHHhhhccCCeeEEEEeecccccchHHHHHHHhcCCCCCCeEEEeeecCCCCCCCChHHHHHHHH
Q 046158 247 SACPFKKLAIMFTIKMIMKVSEKASTLHIVDFGIRYGFQWPMLIQFLSMRTGGPPRLRITGIELPQPGFRPAERIEETGR 326 (542)
Q Consensus 247 ~~~Pf~kfa~~~ANqaIleA~~g~~~VHIIDfgI~~G~QWp~Liq~LA~R~gGPP~LRITgI~~p~~gf~p~~~leetG~ 326 (542)
...|.....+-.++..+-..+. ..-+|+|+|-+.|.--. .|+.+- ..|..++||||.. .+.++.+.+
T Consensus 34 ~~~p~y~~~~~~~~~~~~~~~~--~~~~vLDlGcGtG~~~~----~l~~~~-~~~~~~v~gvD~S------~~ml~~A~~ 100 (247)
T PRK15451 34 RSVPGYSNIISMIGMLAERFVQ--PGTQVYDLGCSLGAATL----SVRRNI-HHDNCKIIAIDNS------PAMIERCRR 100 (247)
T ss_pred hcCCChHHHHHHHHHHHHHhCC--CCCEEEEEcccCCHHHH----HHHHhc-CCCCCeEEEEeCC------HHHHHHHHH
Confidence 3456666555555443322222 33579999999986333 343321 1256899999963 355666666
Q ss_pred HHHHHHHhcCCcEEEEEeeCCCcccccccccccCCCceEEEEecccccccccccccCCCchHHHHHHH-HhhCCC-EEEE
Q 046158 327 RLLKYCQRFNVPFEYNCIASQNWETIQIEDLKINPDEVLAVNSLFRFKNLLDETVDVNCPRNSVLKLI-RKIKPD-IFVN 404 (542)
Q Consensus 327 rL~~~A~~~gVpFeF~~I~~~~~E~l~~~dL~i~~~E~LaVN~~~~L~~L~des~~~~sprd~vL~~I-r~L~P~-V~v~ 404 (542)
++..+.. .-.++|. . ...+++.. ....+++ |.+.|||+.++ .+..+|+.| +.|+|. ++++
T Consensus 101 ~~~~~~~--~~~v~~~--~-~d~~~~~~-----~~~D~vv--~~~~l~~l~~~------~~~~~l~~i~~~LkpGG~l~l 162 (247)
T PRK15451 101 HIDAYKA--PTPVDVI--E-GDIRDIAI-----ENASMVV--LNFTLQFLEPS------ERQALLDKIYQGLNPGGALVL 162 (247)
T ss_pred HHHhcCC--CCCeEEE--e-CChhhCCC-----CCCCEEe--hhhHHHhCCHH------HHHHHHHHHHHhcCCCCEEEE
Confidence 6644321 1134443 2 33333322 2223433 45677887542 245666666 678997 4555
Q ss_pred EeecCCCCCCchHHHHHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHHHHHHhhcCCcccccccchhhHHHHHHh
Q 046158 405 SIVNGSYNAPFFVTRFREAIFHFSSLFDMFDTTMPREDPERLMFEREVYGREAMNVIACEGLERVERPETYKQWQARTIR 484 (542)
Q Consensus 405 ~e~~~~~nsp~F~~RF~EAL~~YsAlFDsLda~~pr~~~~R~~iE~~~~greI~NvVAcEG~eRvER~E~~~qW~~R~~r 484 (542)
++.-...+ +.....+.+....|. .....+ ...+++. .....| +-++++..+...++..
T Consensus 163 ~e~~~~~~-~~~~~~~~~~~~~~~-----~~~g~s-----~~ei~~~--~~~~~~---------~~~~~~~~~~~~~L~~ 220 (247)
T PRK15451 163 SEKFSFED-AKVGELLFNMHHDFK-----RANGYS-----ELEISQK--RSMLEN---------VMLTDSVETHKARLHK 220 (247)
T ss_pred EEecCCCc-chhHHHHHHHHHHHH-----HHcCCC-----HHHHHHH--HHHHHh---------hcccCCHHHHHHHHHH
Confidence 55432222 222333333222221 112222 1122221 112222 4456788899999999
Q ss_pred CCCccc
Q 046158 485 AGFKQL 490 (542)
Q Consensus 485 AGF~~~ 490 (542)
|||..+
T Consensus 221 aGF~~v 226 (247)
T PRK15451 221 AGFEHS 226 (247)
T ss_pred cCchhH
Confidence 999864
No 3
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=95.70 E-value=1.5 Score=42.96 Aligned_cols=180 Identities=15% Similarity=0.160 Sum_probs=85.6
Q ss_pred HHHHhhhccCCeeEEEEeecccccchHHHHHHHhcCCCCCCeEEEeeecCCCCCCCChHHHHHHHHHHHHHHHhcCCcEE
Q 046158 261 KMIMKVSEKASTLHIVDFGIRYGFQWPMLIQFLSMRTGGPPRLRITGIELPQPGFRPAERIEETGRRLLKYCQRFNVPFE 340 (542)
Q Consensus 261 qaIleA~~g~~~VHIIDfgI~~G~QWp~Liq~LA~R~gGPP~LRITgI~~p~~gf~p~~~leetG~rL~~~A~~~gVpFe 340 (542)
+.++..+.-...-+|+|+|.+.|. +...|+.+ .+|..++||||.. .+.++.+.+++. ..+++ .
T Consensus 35 ~~~l~~l~~~~~~~vLDiGcG~G~----~~~~la~~--~~~~~~v~gvD~s------~~~~~~a~~~~~----~~~~~-~ 97 (231)
T TIGR02752 35 KDTMKRMNVQAGTSALDVCCGTAD----WSIALAEA--VGPEGHVIGLDFS------ENMLSVGRQKVK----DAGLH-N 97 (231)
T ss_pred HHHHHhcCCCCCCEEEEeCCCcCH----HHHHHHHH--hCCCCEEEEEECC------HHHHHHHHHHHH----hcCCC-c
Confidence 445555543444589999999986 22344443 2245689999963 344555555543 23333 1
Q ss_pred EEEeeCCCcccccccccccCCCceEEEEecccccccccccccCCCchHHHHHH-HHhhCCCEEEEEeecCCCCCCchHHH
Q 046158 341 YNCIASQNWETIQIEDLKINPDEVLAVNSLFRFKNLLDETVDVNCPRNSVLKL-IRKIKPDIFVNSIVNGSYNAPFFVTR 419 (542)
Q Consensus 341 F~~I~~~~~E~l~~~dL~i~~~E~LaVN~~~~L~~L~des~~~~sprd~vL~~-Ir~L~P~V~v~~e~~~~~nsp~F~~R 419 (542)
...+. ...+++... ...=+.|+ +.+.+|++.+ + ..+|+. .+.|+|.-.++....+..+.+ -
T Consensus 98 v~~~~-~d~~~~~~~---~~~fD~V~--~~~~l~~~~~-------~-~~~l~~~~~~Lk~gG~l~~~~~~~~~~~----~ 159 (231)
T TIGR02752 98 VELVH-GNAMELPFD---DNSFDYVT--IGFGLRNVPD-------Y-MQVLREMYRVVKPGGKVVCLETSQPTIP----G 159 (231)
T ss_pred eEEEE-echhcCCCC---CCCccEEE--EecccccCCC-------H-HHHHHHHHHHcCcCeEEEEEECCCCCCh----H
Confidence 22222 222222211 11112343 3455677643 3 345554 577899865443333333333 2
Q ss_pred HHHHHHHHHH-HHHHhhccCCCCCHHHHHHHHHHHHHHHHHHHhhcCCcccccccchhhHHHHHHhCCCccccC
Q 046158 420 FREAIFHFSS-LFDMFDTTMPREDPERLMFEREVYGREAMNVIACEGLERVERPETYKQWQARTIRAGFKQLPL 492 (542)
Q Consensus 420 F~EAL~~YsA-lFDsLda~~pr~~~~R~~iE~~~~greI~NvVAcEG~eRvER~E~~~qW~~R~~rAGF~~~pL 492 (542)
++..+.+|.. +...+...+.+.. .+...+...+. +--+.++++..+..|||..+.+
T Consensus 160 ~~~~~~~~~~~~~p~~~~~~~~~~-----~~~~~~~~~~~------------~~~~~~~l~~~l~~aGf~~~~~ 216 (231)
T TIGR02752 160 FKQLYFFYFKYIMPLFGKLFAKSY-----KEYSWLQESTR------------DFPGMDELAEMFQEAGFKDVEV 216 (231)
T ss_pred HHHHHHHHHcChhHHhhHHhcCCH-----HHHHHHHHHHH------------HcCCHHHHHHHHHHcCCCeeEE
Confidence 4443333321 1111121221111 11111122222 2235568999999999987643
No 4
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=95.36 E-value=0.35 Score=47.98 Aligned_cols=167 Identities=17% Similarity=0.207 Sum_probs=86.0
Q ss_pred CeeEEEEeecccccchHHHHHHHhcCCCCCCeEEEeeecCCCCCCCChHHHHHHHHHHHHHHHhcCCcEEEEEeeCCCcc
Q 046158 271 STLHIVDFGIRYGFQWPMLIQFLSMRTGGPPRLRITGIELPQPGFRPAERIEETGRRLLKYCQRFNVPFEYNCIASQNWE 350 (542)
Q Consensus 271 ~~VHIIDfgI~~G~QWp~Liq~LA~R~gGPP~LRITgI~~p~~gf~p~~~leetG~rL~~~A~~~gVpFeF~~I~~~~~E 350 (542)
..-+|+|+|.+.|. ++..|+.+- ..|..++||||.. .+.++.+.+++.++.. +.+.+|. . ..+.
T Consensus 53 ~~~~iLDlGcG~G~----~~~~l~~~~-~~p~~~v~gvD~s------~~ml~~a~~~~~~~~~--~~~v~~~--~-~d~~ 116 (239)
T TIGR00740 53 PDSNVYDLGCSRGA----ATLSARRNI-NQPNVKIIGIDNS------QPMVERCRQHIAAYHS--EIPVEIL--C-NDIR 116 (239)
T ss_pred CCCEEEEecCCCCH----HHHHHHHhc-CCCCCeEEEEeCC------HHHHHHHHHHHHhcCC--CCCeEEE--E-CChh
Confidence 44579999999984 444555442 1256899999963 3456666666654322 2233443 2 3344
Q ss_pred cccccccccCCCceEEEEecccccccccccccCCCchHHHHHHH-HhhCCCEEE-EEeecCCCCCCchHHHHHHHH-HHH
Q 046158 351 TIQIEDLKINPDEVLAVNSLFRFKNLLDETVDVNCPRNSVLKLI-RKIKPDIFV-NSIVNGSYNAPFFVTRFREAI-FHF 427 (542)
Q Consensus 351 ~l~~~dL~i~~~E~LaVN~~~~L~~L~des~~~~sprd~vL~~I-r~L~P~V~v-~~e~~~~~nsp~F~~RF~EAL-~~Y 427 (542)
++... +.. +|-|.+.|||+.++ .+..+|+.+ +.|+|.-.+ +++.-...+.+ ..+.+ ..|
T Consensus 117 ~~~~~-----~~d--~v~~~~~l~~~~~~------~~~~~l~~i~~~LkpgG~l~i~d~~~~~~~~-----~~~~~~~~~ 178 (239)
T TIGR00740 117 HVEIK-----NAS--MVILNFTLQFLPPE------DRIALLTKIYEGLNPNGVLVLSEKFRFEDTK-----INHLLIDLH 178 (239)
T ss_pred hCCCC-----CCC--EEeeecchhhCCHH------HHHHHHHHHHHhcCCCeEEEEeecccCCCHh-----HHHHHHHHH
Confidence 33322 222 34466678888542 234566666 668998644 33332222111 11222 122
Q ss_pred HHHHHHhhccCCCCCHHHHHHHHHHHHHHHHHHHhhcCCcccccccchhhHHHHHHhCCCcc
Q 046158 428 SSLFDMFDTTMPREDPERLMFEREVYGREAMNVIACEGLERVERPETYKQWQARTIRAGFKQ 489 (542)
Q Consensus 428 sAlFDsLda~~pr~~~~R~~iE~~~~greI~NvVAcEG~eRvER~E~~~qW~~R~~rAGF~~ 489 (542)
..... .... +.+ -+++ ....+.| +-++.+.+.|...+..|||..
T Consensus 179 ~~~~~--~~g~---~~~--~~~~--~~~~~~~---------~~~~~s~~~~~~~l~~aGF~~ 222 (239)
T TIGR00740 179 HQFKR--ANGY---SEL--EISQ--KRTALEN---------VMRTDSIETHKARLKNVGFSH 222 (239)
T ss_pred HHHHH--HcCC---CHH--HHHH--HHHHHhc---------cCCCCCHHHHHHHHHHcCCch
Confidence 22111 1111 111 1111 1122222 346788899999999999984
No 5
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=94.71 E-value=3 Score=42.44 Aligned_cols=112 Identities=16% Similarity=0.204 Sum_probs=61.8
Q ss_pred HHhhhccCCeeEEEEeecccccchHHHHHHHhcCCCCCCeEEEeeecCCCCCCCChHHHHHHHHHHHHHHHhcCCcEEEE
Q 046158 263 IMKVSEKASTLHIVDFGIRYGFQWPMLIQFLSMRTGGPPRLRITGIELPQPGFRPAERIEETGRRLLKYCQRFNVPFEYN 342 (542)
Q Consensus 263 IleA~~g~~~VHIIDfgI~~G~QWp~Liq~LA~R~gGPP~LRITgI~~p~~gf~p~~~leetG~rL~~~A~~~gVpFeF~ 342 (542)
+++.+.-...-+|+|+|.+.|. +...|+.+.+ |.-+|||||.. .+.++.+.++....+....-..+|.
T Consensus 65 ~~~~~~~~~~~~VLDlGcGtG~----~~~~la~~~~--~~~~V~gvD~S------~~ml~~A~~r~~~~~~~~~~~i~~~ 132 (261)
T PLN02233 65 AVSWSGAKMGDRVLDLCCGSGD----LAFLLSEKVG--SDGKVMGLDFS------SEQLAVAASRQELKAKSCYKNIEWI 132 (261)
T ss_pred HHHHhCCCCCCEEEEECCcCCH----HHHHHHHHhC--CCCEEEEEECC------HHHHHHHHHHhhhhhhccCCCeEEE
Confidence 3333333445689999999997 3345555432 34589999963 4556666555432222222223332
Q ss_pred EeeCCCcccccccccccCCCceEEEEecccccccccccccCCCchHHHHHHHHhhCCCE
Q 046158 343 CIASQNWETIQIEDLKINPDEVLAVNSLFRFKNLLDETVDVNCPRNSVLKLIRKIKPDI 401 (542)
Q Consensus 343 ~I~~~~~E~l~~~dL~i~~~E~LaVN~~~~L~~L~des~~~~sprd~vL~~Ir~L~P~V 401 (542)
. ...++ +...++.+=+|-|.+.|||+.| |...+-+..|-|+|.-
T Consensus 133 ~---~d~~~-----lp~~~~sfD~V~~~~~l~~~~d-------~~~~l~ei~rvLkpGG 176 (261)
T PLN02233 133 E---GDATD-----LPFDDCYFDAITMGYGLRNVVD-------RLKAMQEMYRVLKPGS 176 (261)
T ss_pred E---ccccc-----CCCCCCCEeEEEEecccccCCC-------HHHHHHHHHHHcCcCc
Confidence 2 22333 3333343445667788888753 4444445557799984
No 6
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=94.07 E-value=1 Score=45.17 Aligned_cols=114 Identities=16% Similarity=0.257 Sum_probs=62.9
Q ss_pred HHHhhhccCCeeEEEEeecccccchHHHHHHHhcCCCCCCeEEEeeecCCCCCCCChHHHHHHHHHHHHHHHhcCCcEEE
Q 046158 262 MIMKVSEKASTLHIVDFGIRYGFQWPMLIQFLSMRTGGPPRLRITGIELPQPGFRPAERIEETGRRLLKYCQRFNVPFEY 341 (542)
Q Consensus 262 aIleA~~g~~~VHIIDfgI~~G~QWp~Liq~LA~R~gGPP~LRITgI~~p~~gf~p~~~leetG~rL~~~A~~~gVpFeF 341 (542)
.+++.+.-...-+|+|+|-+.|. +...|+.+. |..++||||.. ...++ .|+.-++.|.
T Consensus 20 ~ll~~l~~~~~~~vLDlGcG~G~----~~~~l~~~~---p~~~v~gvD~s------~~~~~--------~a~~~~~~~~- 77 (255)
T PRK14103 20 DLLARVGAERARRVVDLGCGPGN----LTRYLARRW---PGAVIEALDSS------PEMVA--------AARERGVDAR- 77 (255)
T ss_pred HHHHhCCCCCCCEEEEEcCCCCH----HHHHHHHHC---CCCEEEEEECC------HHHHH--------HHHhcCCcEE-
Confidence 45666654555789999999983 455677653 34689999963 22233 3344455442
Q ss_pred EEeeCCCcccccccccccCCCceEEEEecccccccccccccCCCchHHHHHHHHhhCCCEEEEEeecCCCCCC
Q 046158 342 NCIASQNWETIQIEDLKINPDEVLAVNSLFRFKNLLDETVDVNCPRNSVLKLIRKIKPDIFVNSIVNGSYNAP 414 (542)
Q Consensus 342 ~~I~~~~~E~l~~~dL~i~~~E~LaVN~~~~L~~L~des~~~~sprd~vL~~Ir~L~P~V~v~~e~~~~~nsp 414 (542)
. ...+++. ..+.+=+|-|.+.|||+.| |...+-+..+.|+|.-.++....++...+
T Consensus 78 ---~-~d~~~~~------~~~~fD~v~~~~~l~~~~d-------~~~~l~~~~~~LkpgG~l~~~~~~~~~~~ 133 (255)
T PRK14103 78 ---T-GDVRDWK------PKPDTDVVVSNAALQWVPE-------HADLLVRWVDELAPGSWIAVQVPGNFDAP 133 (255)
T ss_pred ---E-cChhhCC------CCCCceEEEEehhhhhCCC-------HHHHHHHHHHhCCCCcEEEEEcCCCcCCh
Confidence 1 2222221 1122334445556778754 33444445577999965544443443344
No 7
>PRK06202 hypothetical protein; Provisional
Probab=94.01 E-value=1.5 Score=43.36 Aligned_cols=144 Identities=14% Similarity=0.116 Sum_probs=71.8
Q ss_pred CCHHHHHHHHHHHhhhCCcchhhHHHHhHHHHhhhccCCeeEEEEeecccccchHHHHHHHhcCCCCCCeEEEeeecCCC
Q 046158 233 KSAADMLKAYKVYLSACPFKKLAIMFTIKMIMKVSEKASTLHIVDFGIRYGFQWPMLIQFLSMRTGGPPRLRITGIELPQ 312 (542)
Q Consensus 233 ~s~~~~l~Ay~~f~~~~Pf~kfa~~~ANqaIleA~~g~~~VHIIDfgI~~G~QWp~Liq~LA~R~gGPP~LRITgI~~p~ 312 (542)
.++.++-+.|+.|-.+.++..--+-+-.+.+...+...+...|+|+|-|.|. +...|....... | |..+|||||..
T Consensus 22 ~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~l~~~~~~~iLDlGcG~G~-~~~~L~~~~~~~-g-~~~~v~gvD~s- 97 (232)
T PRK06202 22 CDPARLDRTYAGFRRVNRIVAGWRGLYRRLLRPALSADRPLTLLDIGCGGGD-LAIDLARWARRD-G-LRLEVTAIDPD- 97 (232)
T ss_pred cCHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHhcCCCCCcEEEEeccCCCH-HHHHHHHHHHhC-C-CCcEEEEEcCC-
Confidence 4455666666655544333321122222333333333456789999999996 333332222211 2 45799999963
Q ss_pred CCCCChHHHHHHHHHHHHHHHhcCCcEEEEEeeCCCcccccccccccCCCceEEEEecccccccccccccCCCchHHHHH
Q 046158 313 PGFRPAERIEETGRRLLKYCQRFNVPFEYNCIASQNWETIQIEDLKINPDEVLAVNSLFRFKNLLDETVDVNCPRNSVLK 392 (542)
Q Consensus 313 ~gf~p~~~leetG~rL~~~A~~~gVpFeF~~I~~~~~E~l~~~dL~i~~~E~LaVN~~~~L~~L~des~~~~sprd~vL~ 392 (542)
.+.++.+.++. ..-|+++.. +. .+.+ ...++.+=+|-|.+.|||+.|+. ...+|+
T Consensus 98 -----~~~l~~a~~~~----~~~~~~~~~--~~---~~~l-----~~~~~~fD~V~~~~~lhh~~d~~------~~~~l~ 152 (232)
T PRK06202 98 -----PRAVAFARANP----RRPGVTFRQ--AV---SDEL-----VAEGERFDVVTSNHFLHHLDDAE------VVRLLA 152 (232)
T ss_pred -----HHHHHHHHhcc----ccCCCeEEE--Ee---cccc-----cccCCCccEEEECCeeecCChHH------HHHHHH
Confidence 23344443322 122454433 22 1112 11223344555666799997631 346787
Q ss_pred HHHhhCCCEEEEE
Q 046158 393 LIRKIKPDIFVNS 405 (542)
Q Consensus 393 ~Ir~L~P~V~v~~ 405 (542)
.+.++--..+++.
T Consensus 153 ~~~r~~~~~~~i~ 165 (232)
T PRK06202 153 DSAALARRLVLHN 165 (232)
T ss_pred HHHHhcCeeEEEe
Confidence 7766554555443
No 8
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=92.99 E-value=1.4 Score=45.54 Aligned_cols=116 Identities=12% Similarity=0.101 Sum_probs=62.9
Q ss_pred hHHHHhhhccCCeeEEEEeecccccchHHHHHHHhcCCCCCCeEEEeeecCCCCCCCChHHHHHHHHHHHHHHHhcCCcE
Q 046158 260 IKMIMKVSEKASTLHIVDFGIRYGFQWPMLIQFLSMRTGGPPRLRITGIELPQPGFRPAERIEETGRRLLKYCQRFNVPF 339 (542)
Q Consensus 260 NqaIleA~~g~~~VHIIDfgI~~G~QWp~Liq~LA~R~gGPP~LRITgI~~p~~gf~p~~~leetG~rL~~~A~~~gVpF 339 (542)
.+.|++.+.-.+.-+|+|+|-+.|. +...++++. |.+++|+++.| ..++.+.++ ++..|+.=
T Consensus 138 ~~~l~~~~~~~~~~~vlDiG~G~G~----~~~~~~~~~---p~~~~~~~D~~-------~~~~~a~~~----~~~~gl~~ 199 (306)
T TIGR02716 138 IQLLLEEAKLDGVKKMIDVGGGIGD----ISAAMLKHF---PELDSTILNLP-------GAIDLVNEN----AAEKGVAD 199 (306)
T ss_pred HHHHHHHcCCCCCCEEEEeCCchhH----HHHHHHHHC---CCCEEEEEecH-------HHHHHHHHH----HHhCCccc
Confidence 5667777765566799999999883 445555553 67899999863 335554443 44445431
Q ss_pred EEEEeeCCCcccccccccccCCCceEEEEecccccccccccccCCCchHHHHHHH-HhhCCC-EEEEEee
Q 046158 340 EYNCIASQNWETIQIEDLKINPDEVLAVNSLFRFKNLLDETVDVNCPRNSVLKLI-RKIKPD-IFVNSIV 407 (542)
Q Consensus 340 eF~~I~~~~~E~l~~~dL~i~~~E~LaVN~~~~L~~L~des~~~~sprd~vL~~I-r~L~P~-V~v~~e~ 407 (542)
.++.+. .+..+. + +...+++++. ..||+..++ ....+|+.+ +.|+|. .+++.+.
T Consensus 200 rv~~~~-~d~~~~---~--~~~~D~v~~~--~~lh~~~~~------~~~~il~~~~~~L~pgG~l~i~d~ 255 (306)
T TIGR02716 200 RMRGIA-VDIYKE---S--YPEADAVLFC--RILYSANEQ------LSTIMCKKAFDAMRSGGRLLILDM 255 (306)
T ss_pred eEEEEe-cCccCC---C--CCCCCEEEeE--hhhhcCChH------HHHHHHHHHHHhcCCCCEEEEEEe
Confidence 222233 222111 1 1123343332 345555332 124567666 679996 3444544
No 9
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=91.79 E-value=1.6 Score=39.33 Aligned_cols=97 Identities=26% Similarity=0.319 Sum_probs=54.6
Q ss_pred cCCeeEEEEeecccccchHHHHHHHhcCCCCCCeEEEeeecCCCCCCCChHHHHHHHHHHHHHHHhcCCcEEEEEeeCCC
Q 046158 269 KASTLHIVDFGIRYGFQWPMLIQFLSMRTGGPPRLRITGIELPQPGFRPAERIEETGRRLLKYCQRFNVPFEYNCIASQN 348 (542)
Q Consensus 269 g~~~VHIIDfgI~~G~QWp~Liq~LA~R~gGPP~LRITgI~~p~~gf~p~~~leetG~rL~~~A~~~gVpFeF~~I~~~~ 348 (542)
..+.-.|+|+|-+.| . +.+.|+.+ |. ++||++.. ...++. ..+.+.-....
T Consensus 20 ~~~~~~vLDiGcG~G-~---~~~~l~~~--~~---~~~g~D~~------~~~~~~-----------~~~~~~~~~~~--- 70 (161)
T PF13489_consen 20 LKPGKRVLDIGCGTG-S---FLRALAKR--GF---EVTGVDIS------PQMIEK-----------RNVVFDNFDAQ--- 70 (161)
T ss_dssp TTTTSEEEEESSTTS-H---HHHHHHHT--TS---EEEEEESS------HHHHHH-----------TTSEEEEEECH---
T ss_pred cCCCCEEEEEcCCCC-H---HHHHHHHh--CC---EEEEEECC------HHHHhh-----------hhhhhhhhhhh---
Confidence 456679999999999 3 44555544 32 99999963 222322 22332221111
Q ss_pred cccccccccccCCCceEEEEecccccccccccccCCCchHHHHHHH-HhhCCCE-EEEEeecC
Q 046158 349 WETIQIEDLKINPDEVLAVNSLFRFKNLLDETVDVNCPRNSVLKLI-RKIKPDI-FVNSIVNG 409 (542)
Q Consensus 349 ~E~l~~~dL~i~~~E~LaVN~~~~L~~L~des~~~~sprd~vL~~I-r~L~P~V-~v~~e~~~ 409 (542)
+....++-+=+|-|...|+|+.| | ..+|+.| +.|+|.- +++...+.
T Consensus 71 -------~~~~~~~~fD~i~~~~~l~~~~d-------~-~~~l~~l~~~LkpgG~l~~~~~~~ 118 (161)
T PF13489_consen 71 -------DPPFPDGSFDLIICNDVLEHLPD-------P-EEFLKELSRLLKPGGYLVISDPNR 118 (161)
T ss_dssp -------THHCHSSSEEEEEEESSGGGSSH-------H-HHHHHHHHHCEEEEEEEEEEEEBT
T ss_pred -------hhhccccchhhHhhHHHHhhccc-------H-HHHHHHHHHhcCCCCEEEEEEcCC
Confidence 11122334556666688999974 3 3555555 5689974 44455544
No 10
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=90.68 E-value=16 Score=34.90 Aligned_cols=113 Identities=19% Similarity=0.265 Sum_probs=58.8
Q ss_pred hHHHHhhhccCCeeEEEEeecccccchHHHHHHHhcCCCCCCeEEEeeecCCCCCCCChHHHHHHHHHHHHHHHhcCCcE
Q 046158 260 IKMIMKVSEKASTLHIVDFGIRYGFQWPMLIQFLSMRTGGPPRLRITGIELPQPGFRPAERIEETGRRLLKYCQRFNVPF 339 (542)
Q Consensus 260 NqaIleA~~g~~~VHIIDfgI~~G~QWp~Liq~LA~R~gGPP~LRITgI~~p~~gf~p~~~leetG~rL~~~A~~~gVpF 339 (542)
.+.+++.+...+...|+|+|-+.|. +...++.+ +|+..++|+|+.. ...++.+.+++. .+-..
T Consensus 28 ~~~~~~~~~~~~~~~vldiG~G~G~----~~~~~~~~--~~~~~~~~~iD~~------~~~~~~~~~~~~-----~~~~i 90 (223)
T TIGR01934 28 RRRAVKLIGVFKGQKVLDVACGTGD----LAIELAKS--APDRGKVTGVDFS------SEMLEVAKKKSE-----LPLNI 90 (223)
T ss_pred HHHHHHHhccCCCCeEEEeCCCCCh----hHHHHHHh--cCCCceEEEEECC------HHHHHHHHHHhc-----cCCCc
Confidence 3455666555567899999999885 33344433 2344789999863 233444444432 12223
Q ss_pred EEEEeeCCCcccccccccccCCCceEEEEecccccccccccccCCCchHHHHHHHHhhCCCEEEE
Q 046158 340 EYNCIASQNWETIQIEDLKINPDEVLAVNSLFRFKNLLDETVDVNCPRNSVLKLIRKIKPDIFVN 404 (542)
Q Consensus 340 eF~~I~~~~~E~l~~~dL~i~~~E~LaVN~~~~L~~L~des~~~~sprd~vL~~Ir~L~P~V~v~ 404 (542)
.|... +..++. ..++.+=+|-+.+.+|++.+ +...+-+..+.|+|.-.++
T Consensus 91 ~~~~~---d~~~~~-----~~~~~~D~i~~~~~~~~~~~-------~~~~l~~~~~~L~~gG~l~ 140 (223)
T TIGR01934 91 EFIQA---DAEALP-----FEDNSFDAVTIAFGLRNVTD-------IQKALREMYRVLKPGGRLV 140 (223)
T ss_pred eEEec---chhcCC-----CCCCcEEEEEEeeeeCCccc-------HHHHHHHHHHHcCCCcEEE
Confidence 33322 222221 11222334445566677643 3333444456689985443
No 11
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=90.62 E-value=1.9 Score=39.51 Aligned_cols=105 Identities=23% Similarity=0.313 Sum_probs=57.4
Q ss_pred CCeeEEEEeecccccchHHHHHHHhcCCCCCCeEEEeeecCCCCCCCChHHHHHHHHHHHHHHHhcCCc-EEEEEeeCCC
Q 046158 270 ASTLHIVDFGIRYGFQWPMLIQFLSMRTGGPPRLRITGIELPQPGFRPAERIEETGRRLLKYCQRFNVP-FEYNCIASQN 348 (542)
Q Consensus 270 ~~~VHIIDfgI~~G~QWp~Liq~LA~R~gGPP~LRITgI~~p~~gf~p~~~leetG~rL~~~A~~~gVp-FeF~~I~~~~ 348 (542)
.+..+|+|+|.+.|..= ..|+.+-+ |..+|||||.. .+.++ +..+.++..+++ .+|.. .+
T Consensus 2 ~~~~~iLDlGcG~G~~~----~~l~~~~~--~~~~i~gvD~s------~~~i~----~a~~~~~~~~~~ni~~~~---~d 62 (152)
T PF13847_consen 2 KSNKKILDLGCGTGRLL----IQLAKELN--PGAKIIGVDIS------EEMIE----YAKKRAKELGLDNIEFIQ---GD 62 (152)
T ss_dssp TTTSEEEEET-TTSHHH----HHHHHHST--TTSEEEEEESS------HHHHH----HHHHHHHHTTSTTEEEEE---SB
T ss_pred CCCCEEEEecCcCcHHH----HHHHHhcC--CCCEEEEEECc------HHHHH----HhhcccccccccccceEE---ee
Confidence 35678999999998533 33442211 24569999973 33333 334456677887 55544 34
Q ss_pred cccccccccccCCCceEEEEecccccccccccccCCCchHHHHHHHHhhCCCEEEE
Q 046158 349 WETIQIEDLKINPDEVLAVNSLFRFKNLLDETVDVNCPRNSVLKLIRKIKPDIFVN 404 (542)
Q Consensus 349 ~E~l~~~dL~i~~~E~LaVN~~~~L~~L~des~~~~sprd~vL~~Ir~L~P~V~v~ 404 (542)
++++... +. +.+=+|.+...++|+.+ |...+-+.++.|+|.-.++
T Consensus 63 ~~~l~~~-~~---~~~D~I~~~~~l~~~~~-------~~~~l~~~~~~lk~~G~~i 107 (152)
T PF13847_consen 63 IEDLPQE-LE---EKFDIIISNGVLHHFPD-------PEKVLKNIIRLLKPGGILI 107 (152)
T ss_dssp TTCGCGC-SS---TTEEEEEEESTGGGTSH-------HHHHHHHHHHHEEEEEEEE
T ss_pred hhccccc-cC---CCeeEEEEcCchhhccC-------HHHHHHHHHHHcCCCcEEE
Confidence 5554422 22 22223444444466643 3344445567899986543
No 12
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=89.41 E-value=2.4 Score=42.64 Aligned_cols=110 Identities=21% Similarity=0.320 Sum_probs=60.3
Q ss_pred HHHhhhccCCeeEEEEeecccccchHHHHHHHhcCCCCCCeEEEeeecCCCCCCCChHHHHHHHHHHHHHHHhcCCcEEE
Q 046158 262 MIMKVSEKASTLHIVDFGIRYGFQWPMLIQFLSMRTGGPPRLRITGIELPQPGFRPAERIEETGRRLLKYCQRFNVPFEY 341 (542)
Q Consensus 262 aIleA~~g~~~VHIIDfgI~~G~QWp~Liq~LA~R~gGPP~LRITgI~~p~~gf~p~~~leetG~rL~~~A~~~gVpFeF 341 (542)
.+++.+...+-.+|+|.+.|.|--+.. |+++.+ |.-+|||+|.. .+-++.+.+++.+.... +| +|
T Consensus 38 ~~~~~~~~~~g~~vLDv~~GtG~~~~~----l~~~~~--~~~~v~~vD~s------~~ML~~a~~k~~~~~~~-~i--~~ 102 (233)
T PF01209_consen 38 KLIKLLGLRPGDRVLDVACGTGDVTRE----LARRVG--PNGKVVGVDIS------PGMLEVARKKLKREGLQ-NI--EF 102 (233)
T ss_dssp HHHHHHT--S--EEEEET-TTSHHHHH----HGGGSS-----EEEEEES-------HHHHHHHHHHHHHTT---SE--EE
T ss_pred HHHhccCCCCCCEEEEeCCChHHHHHH----HHHHCC--CccEEEEecCC------HHHHHHHHHHHHhhCCC-Ce--eE
Confidence 445555566677999999999954443 444432 44599999973 45677777777765433 33 33
Q ss_pred EEeeCCCcccccccccccCCCceEEEEecccccccccccccCCCchHHHHHHHHhhCCCE
Q 046158 342 NCIASQNWETIQIEDLKINPDEVLAVNSLFRFKNLLDETVDVNCPRNSVLKLIRKIKPDI 401 (542)
Q Consensus 342 ~~I~~~~~E~l~~~dL~i~~~E~LaVN~~~~L~~L~des~~~~sprd~vL~~Ir~L~P~V 401 (542)
.. . +.++|...++.+=+|-|.|.||++.| +...+=...|-|+|.-
T Consensus 103 v~---~-----da~~lp~~d~sfD~v~~~fglrn~~d-------~~~~l~E~~RVLkPGG 147 (233)
T PF01209_consen 103 VQ---G-----DAEDLPFPDNSFDAVTCSFGLRNFPD-------RERALREMYRVLKPGG 147 (233)
T ss_dssp EE---------BTTB--S-TT-EEEEEEES-GGG-SS-------HHHHHHHHHHHEEEEE
T ss_pred EE---c-----CHHHhcCCCCceeEEEHHhhHHhhCC-------HHHHHHHHHHHcCCCe
Confidence 22 2 33455565567779999999999975 3334445557799974
No 13
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=87.33 E-value=2.1 Score=36.41 Aligned_cols=94 Identities=18% Similarity=0.271 Sum_probs=50.5
Q ss_pred EEEeecccccchHHHHHHHhcCCCCCCeEEEeeecCCCCCCCChHHHHHHHHHHHHHHHhcCCcEEEEEeeCCCcccccc
Q 046158 275 IVDFGIRYGFQWPMLIQFLSMRTGGPPRLRITGIELPQPGFRPAERIEETGRRLLKYCQRFNVPFEYNCIASQNWETIQI 354 (542)
Q Consensus 275 IIDfgI~~G~QWp~Liq~LA~R~gGPP~LRITgI~~p~~gf~p~~~leetG~rL~~~A~~~gVpFeF~~I~~~~~E~l~~ 354 (542)
|+|+|-+.|..=-.|.+.+ ..+ |..++||||.. .+.++.+.++..+ .+++.+|.. ....++
T Consensus 1 ILDlgcG~G~~~~~l~~~~--~~~--~~~~~~gvD~s------~~~l~~~~~~~~~----~~~~~~~~~---~D~~~l-- 61 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRF--DAG--PSSRVIGVDIS------PEMLELAKKRFSE----DGPKVRFVQ---ADARDL-- 61 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS---------SEEEEEES-------HHHHHHHHHHSHH----TTTTSEEEE---SCTTCH--
T ss_pred CEEeecCCcHHHHHHHHHh--hhc--ccceEEEEECC------HHHHHHHHHhchh----cCCceEEEE---CCHhHC--
Confidence 7899999997666666665 222 56999999963 4556555544443 455666633 233333
Q ss_pred cccccCCCceEEEEe-cccccccccccccCCCchHHHHHHHHh
Q 046158 355 EDLKINPDEVLAVNS-LFRFKNLLDETVDVNCPRNSVLKLIRK 396 (542)
Q Consensus 355 ~dL~i~~~E~LaVN~-~~~L~~L~des~~~~sprd~vL~~Ir~ 396 (542)
....+.+=+|-| ...++|+.++ ....+|+.+.+
T Consensus 62 ---~~~~~~~D~v~~~~~~~~~~~~~------~~~~ll~~~~~ 95 (101)
T PF13649_consen 62 ---PFSDGKFDLVVCSGLSLHHLSPE------ELEALLRRIAR 95 (101)
T ss_dssp ---HHHSSSEEEEEE-TTGGGGSSHH------HHHHHHHHHHH
T ss_pred ---cccCCCeeEEEEcCCccCCCCHH------HHHHHHHHHHH
Confidence 222334444444 4448887543 24556666644
No 14
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=87.25 E-value=27 Score=34.78 Aligned_cols=112 Identities=18% Similarity=0.197 Sum_probs=60.0
Q ss_pred HhHHHHhhhccCCeeEEEEeecccccchHHHHHHHhcCCCCCCeEEEeeecCCCCCCCChHHHHHHHHHHHHHHHhcCCc
Q 046158 259 TIKMIMKVSEKASTLHIVDFGIRYGFQWPMLIQFLSMRTGGPPRLRITGIELPQPGFRPAERIEETGRRLLKYCQRFNVP 338 (542)
Q Consensus 259 ANqaIleA~~g~~~VHIIDfgI~~G~QWp~Liq~LA~R~gGPP~LRITgI~~p~~gf~p~~~leetG~rL~~~A~~~gVp 338 (542)
-+..+++.+.-.+.-+|+|+|.+.| .+...|+.+. |..++||||.. ...++.+.+++. +
T Consensus 19 ~~~~ll~~~~~~~~~~vLDiGcG~G----~~~~~la~~~---~~~~v~gvD~s------~~~i~~a~~~~~------~-- 77 (258)
T PRK01683 19 PARDLLARVPLENPRYVVDLGCGPG----NSTELLVERW---PAARITGIDSS------PAMLAEARSRLP------D-- 77 (258)
T ss_pred HHHHHHhhCCCcCCCEEEEEcccCC----HHHHHHHHHC---CCCEEEEEECC------HHHHHHHHHhCC------C--
Confidence 3556666665555678999999998 2344566553 34689999963 233433333210 2
Q ss_pred EEEEEeeCCCcccccccccccCCCceEEEEecccccccccccccCCCchHHHHHHHHhhCCCEEEEEee
Q 046158 339 FEYNCIASQNWETIQIEDLKINPDEVLAVNSLFRFKNLLDETVDVNCPRNSVLKLIRKIKPDIFVNSIV 407 (542)
Q Consensus 339 FeF~~I~~~~~E~l~~~dL~i~~~E~LaVN~~~~L~~L~des~~~~sprd~vL~~Ir~L~P~V~v~~e~ 407 (542)
.+|.. ...+++... +.+=+|-|.+.||++.| +...+-+..+.|+|.-.++...
T Consensus 78 ~~~~~---~d~~~~~~~------~~fD~v~~~~~l~~~~d-------~~~~l~~~~~~LkpgG~~~~~~ 130 (258)
T PRK01683 78 CQFVE---ADIASWQPP------QALDLIFANASLQWLPD-------HLELFPRLVSLLAPGGVLAVQM 130 (258)
T ss_pred CeEEE---CchhccCCC------CCccEEEEccChhhCCC-------HHHHHHHHHHhcCCCcEEEEEC
Confidence 23322 122222111 11213445566778754 3344445557789987655443
No 15
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=86.03 E-value=29 Score=33.46 Aligned_cols=43 Identities=14% Similarity=0.106 Sum_probs=27.0
Q ss_pred HHhhhccCCeeEEEEeecccccchHHHHHHHhcCCCCCCeEEEeeecCC
Q 046158 263 IMKVSEKASTLHIVDFGIRYGFQWPMLIQFLSMRTGGPPRLRITGIELP 311 (542)
Q Consensus 263 IleA~~g~~~VHIIDfgI~~G~QWp~Liq~LA~R~gGPP~LRITgI~~p 311 (542)
+++.+.-.+..+|+|+|-+.|. +...++.+ +|+..++|+++..
T Consensus 43 ~~~~~~~~~~~~vldiG~G~G~----~~~~l~~~--~~~~~~v~~~D~s 85 (239)
T PRK00216 43 TIKWLGVRPGDKVLDLACGTGD----LAIALAKA--VGKTGEVVGLDFS 85 (239)
T ss_pred HHHHhCCCCCCeEEEeCCCCCH----HHHHHHHH--cCCCCeEEEEeCC
Confidence 3444333345789999999984 33334433 2457899999863
No 16
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=86.02 E-value=43 Score=34.17 Aligned_cols=156 Identities=16% Similarity=0.246 Sum_probs=90.2
Q ss_pred hhCCcchhh-HHHHhHHHHhhhccCCeeEEEEeecccccchHHHHHHHhcCCCCCCeEEEeeecCCCCCCCChHHHHHHH
Q 046158 247 SACPFKKLA-IMFTIKMIMKVSEKASTLHIVDFGIRYGFQWPMLIQFLSMRTGGPPRLRITGIELPQPGFRPAERIEETG 325 (542)
Q Consensus 247 ~~~Pf~kfa-~~~ANqaIleA~~g~~~VHIIDfgI~~G~QWp~Liq~LA~R~gGPP~LRITgI~~p~~gf~p~~~leetG 325 (542)
...+++.|+ |.+=+++..+.+.-.+--+|+|.+-|-| .|. -.|++.-| .-+|||||.. ...|+.+.
T Consensus 26 ~~n~~~S~g~~~~Wr~~~i~~~~~~~g~~vLDva~GTG-d~a---~~~~k~~g---~g~v~~~D~s------~~ML~~a~ 92 (238)
T COG2226 26 LMNDLMSFGLHRLWRRALISLLGIKPGDKVLDVACGTG-DMA---LLLAKSVG---TGEVVGLDIS------ESMLEVAR 92 (238)
T ss_pred hhcccccCcchHHHHHHHHHhhCCCCCCEEEEecCCcc-HHH---HHHHHhcC---CceEEEEECC------HHHHHHHH
Confidence 344555555 3444555555554346889999999887 233 34444443 7899999963 45566666
Q ss_pred HHHHHHHHhcCCc-EEEEEeeCCCcccccccccccCCCceEEEEecccccccccccccCCCchHHHHHHH-HhhCCCEEE
Q 046158 326 RRLLKYCQRFNVP-FEYNCIASQNWETIQIEDLKINPDEVLAVNSLFRFKNLLDETVDVNCPRNSVLKLI-RKIKPDIFV 403 (542)
Q Consensus 326 ~rL~~~A~~~gVp-FeF~~I~~~~~E~l~~~dL~i~~~E~LaVN~~~~L~~L~des~~~~sprd~vL~~I-r~L~P~V~v 403 (542)
+|+.+ .|+- ++| |. .+- +.|...++-.=+|.|.|.|+|+.| .+.+|+-+ |=|+|...+
T Consensus 93 ~k~~~----~~~~~i~f--v~-~dA-----e~LPf~D~sFD~vt~~fglrnv~d--------~~~aL~E~~RVlKpgG~~ 152 (238)
T COG2226 93 EKLKK----KGVQNVEF--VV-GDA-----ENLPFPDNSFDAVTISFGLRNVTD--------IDKALKEMYRVLKPGGRL 152 (238)
T ss_pred HHhhc----cCccceEE--EE-ech-----hhCCCCCCccCEEEeeehhhcCCC--------HHHHHHHHHHhhcCCeEE
Confidence 66543 2322 333 32 333 344455556668999999999975 35677666 669999865
Q ss_pred EEeecCCCCCCchHHHHHHHHH-HHHH-HHHHhhccCC
Q 046158 404 NSIVNGSYNAPFFVTRFREAIF-HFSS-LFDMFDTTMP 439 (542)
Q Consensus 404 ~~e~~~~~nsp~F~~RF~EAL~-~YsA-lFDsLda~~p 439 (542)
++..=.....+- |+.+++ ||.. ++=.+.....
T Consensus 153 ~vle~~~p~~~~----~~~~~~~~~~~~v~P~~g~~~~ 186 (238)
T COG2226 153 LVLEFSKPDNPV----LRKAYILYYFKYVLPLIGKLVA 186 (238)
T ss_pred EEEEcCCCCchh----hHHHHHHHHHHhHhhhhceeee
Confidence 544333334433 333333 3333 4444444433
No 17
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=85.87 E-value=22 Score=37.72 Aligned_cols=97 Identities=22% Similarity=0.269 Sum_probs=53.7
Q ss_pred eeEEEEeecccccchHHHHHHHhcCCCCCCeEEEeeecCCCCCCCChHHHHHHHHHHHHHHHhcCC--cEEEEEeeCCCc
Q 046158 272 TLHIVDFGIRYGFQWPMLIQFLSMRTGGPPRLRITGIELPQPGFRPAERIEETGRRLLKYCQRFNV--PFEYNCIASQNW 349 (542)
Q Consensus 272 ~VHIIDfgI~~G~QWp~Liq~LA~R~gGPP~LRITgI~~p~~gf~p~~~leetG~rL~~~A~~~gV--pFeF~~I~~~~~ 349 (542)
...|+|+|.|.|. +...|+. .| .++||||.. .+.++.+.++ ++.-++ ..+|.. ...
T Consensus 132 g~~ILDIGCG~G~----~s~~La~-~g----~~V~GID~s------~~~i~~Ar~~----~~~~~~~~~i~~~~---~da 189 (322)
T PLN02396 132 GLKFIDIGCGGGL----LSEPLAR-MG----ATVTGVDAV------DKNVKIARLH----ADMDPVTSTIEYLC---TTA 189 (322)
T ss_pred CCEEEEeeCCCCH----HHHHHHH-cC----CEEEEEeCC------HHHHHHHHHH----HHhcCcccceeEEe---cCH
Confidence 3579999999997 4556664 33 489999863 3334433322 222121 233333 222
Q ss_pred ccccccccccCCCceEEEEecccccccccccccCCCchHHHHHHHH-hhCCCEEE
Q 046158 350 ETIQIEDLKINPDEVLAVNSLFRFKNLLDETVDVNCPRNSVLKLIR-KIKPDIFV 403 (542)
Q Consensus 350 E~l~~~dL~i~~~E~LaVN~~~~L~~L~des~~~~sprd~vL~~Ir-~L~P~V~v 403 (542)
+++ ...++.+=+|-|...|+|+.| | +.+|+.++ -|+|.-.+
T Consensus 190 e~l-----~~~~~~FD~Vi~~~vLeHv~d-------~-~~~L~~l~r~LkPGG~l 231 (322)
T PLN02396 190 EKL-----ADEGRKFDAVLSLEVIEHVAN-------P-AEFCKSLSALTIPNGAT 231 (322)
T ss_pred HHh-----hhccCCCCEEEEhhHHHhcCC-------H-HHHHHHHHHHcCCCcEE
Confidence 333 222233335666778899875 3 45666664 57898543
No 18
>PRK08317 hypothetical protein; Provisional
Probab=84.83 E-value=38 Score=32.45 Aligned_cols=42 Identities=21% Similarity=0.232 Sum_probs=27.5
Q ss_pred HHhhhccCCeeEEEEeecccccchHHHHHHHhcCCCCCCeEEEeeecC
Q 046158 263 IMKVSEKASTLHIVDFGIRYGFQWPMLIQFLSMRTGGPPRLRITGIEL 310 (542)
Q Consensus 263 IleA~~g~~~VHIIDfgI~~G~QWp~Liq~LA~R~gGPP~LRITgI~~ 310 (542)
+++.+.-...-+|+|+|.+.|. |.. .++.+. +|.-++|||+.
T Consensus 11 ~~~~~~~~~~~~vLdiG~G~G~-~~~---~~a~~~--~~~~~v~~~d~ 52 (241)
T PRK08317 11 TFELLAVQPGDRVLDVGCGPGN-DAR---ELARRV--GPEGRVVGIDR 52 (241)
T ss_pred HHHHcCCCCCCEEEEeCCCCCH-HHH---HHHHhc--CCCcEEEEEeC
Confidence 4555555556689999999874 333 344332 24568999986
No 19
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=82.81 E-value=13 Score=36.72 Aligned_cols=44 Identities=25% Similarity=0.360 Sum_probs=29.3
Q ss_pred HHHHhhhccCCeeEEEEeecccccchHHHHHHHhcCCCCCCeEEEeeecCC
Q 046158 261 KMIMKVSEKASTLHIVDFGIRYGFQWPMLIQFLSMRTGGPPRLRITGIELP 311 (542)
Q Consensus 261 qaIleA~~g~~~VHIIDfgI~~G~QWp~Liq~LA~R~gGPP~LRITgI~~p 311 (542)
..++++..=...-+|||+|-+.| .+..+|+.+. |.||+|..|+|
T Consensus 90 ~~~~~~~d~~~~~~vvDvGGG~G----~~~~~l~~~~---P~l~~~v~Dlp 133 (241)
T PF00891_consen 90 DILLEAFDFSGFKTVVDVGGGSG----HFAIALARAY---PNLRATVFDLP 133 (241)
T ss_dssp HHHHHHSTTTTSSEEEEET-TTS----HHHHHHHHHS---TTSEEEEEE-H
T ss_pred hhhhccccccCccEEEeccCcch----HHHHHHHHHC---CCCcceeeccH
Confidence 44555554445558999999999 3444555554 78999999986
No 20
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=81.83 E-value=40 Score=37.03 Aligned_cols=113 Identities=14% Similarity=0.115 Sum_probs=62.9
Q ss_pred HhHHHHhhhccCCeeEEEEeecccccchHHHHHHHhcCCCCCCeEEEeeecCCCCCCCChHHHHHHHHHHHHHHHhcCCc
Q 046158 259 TIKMIMKVSEKASTLHIVDFGIRYGFQWPMLIQFLSMRTGGPPRLRITGIELPQPGFRPAERIEETGRRLLKYCQRFNVP 338 (542)
Q Consensus 259 ANqaIleA~~g~~~VHIIDfgI~~G~QWp~Liq~LA~R~gGPP~LRITgI~~p~~gf~p~~~leetG~rL~~~A~~~gVp 338 (542)
....+++.+.-.+.-+|+|+|.+.|. +...|+.+.+ .++||||.. .+.++.+.++. ...+..
T Consensus 254 ~te~l~~~~~~~~~~~vLDiGcG~G~----~~~~la~~~~----~~v~gvDiS------~~~l~~A~~~~----~~~~~~ 315 (475)
T PLN02336 254 TTKEFVDKLDLKPGQKVLDVGCGIGG----GDFYMAENFD----VHVVGIDLS------VNMISFALERA----IGRKCS 315 (475)
T ss_pred HHHHHHHhcCCCCCCEEEEEeccCCH----HHHHHHHhcC----CEEEEEECC------HHHHHHHHHHh----hcCCCc
Confidence 34556666543445689999999984 3455676553 489999974 34455444332 233334
Q ss_pred EEEEEeeCCCcccccccccccCCCceEEEEecccccccccccccCCCchHHHHHHHHhhCCCEEEE
Q 046158 339 FEYNCIASQNWETIQIEDLKINPDEVLAVNSLFRFKNLLDETVDVNCPRNSVLKLIRKIKPDIFVN 404 (542)
Q Consensus 339 FeF~~I~~~~~E~l~~~dL~i~~~E~LaVN~~~~L~~L~des~~~~sprd~vL~~Ir~L~P~V~v~ 404 (542)
.+|... .+.++. +.++.+=+|-|...++|+.| |...+-...|-|+|.-.++
T Consensus 316 v~~~~~---d~~~~~-----~~~~~fD~I~s~~~l~h~~d-------~~~~l~~~~r~LkpgG~l~ 366 (475)
T PLN02336 316 VEFEVA---DCTKKT-----YPDNSFDVIYSRDTILHIQD-------KPALFRSFFKWLKPGGKVL 366 (475)
T ss_pred eEEEEc---CcccCC-----CCCCCEEEEEECCcccccCC-------HHHHHHHHHHHcCCCeEEE
Confidence 455332 222221 12222445556667788754 4344444457799986543
No 21
>PRK05785 hypothetical protein; Provisional
Probab=81.55 E-value=59 Score=32.32 Aligned_cols=92 Identities=10% Similarity=0.049 Sum_probs=51.7
Q ss_pred eeEEEEeecccccchHHHHHHHhcCCCCCCeEEEeeecCCCCCCCChHHHHHHHHHHHHHHHhcCCcEEEEEeeCCCccc
Q 046158 272 TLHIVDFGIRYGFQWPMLIQFLSMRTGGPPRLRITGIELPQPGFRPAERIEETGRRLLKYCQRFNVPFEYNCIASQNWET 351 (542)
Q Consensus 272 ~VHIIDfgI~~G~QWp~Liq~LA~R~gGPP~LRITgI~~p~~gf~p~~~leetG~rL~~~A~~~gVpFeF~~I~~~~~E~ 351 (542)
.-.|+|+|.+.|.- ...|+.+.+ .++||||.. .+.++....+ .++ +. ...++
T Consensus 52 ~~~VLDlGcGtG~~----~~~l~~~~~----~~v~gvD~S------~~Ml~~a~~~---------~~~----~~-~d~~~ 103 (226)
T PRK05785 52 PKKVLDVAAGKGEL----SYHFKKVFK----YYVVALDYA------ENMLKMNLVA---------DDK----VV-GSFEA 103 (226)
T ss_pred CCeEEEEcCCCCHH----HHHHHHhcC----CEEEEECCC------HHHHHHHHhc---------cce----EE-echhh
Confidence 45799999999943 334554432 489999963 2334433211 111 22 22333
Q ss_pred ccccccccCCCceEEEEecccccccccccccCCCchHHHHHHH-HhhCCCEEEE
Q 046158 352 IQIEDLKINPDEVLAVNSLFRFKNLLDETVDVNCPRNSVLKLI-RKIKPDIFVN 404 (542)
Q Consensus 352 l~~~dL~i~~~E~LaVN~~~~L~~L~des~~~~sprd~vL~~I-r~L~P~V~v~ 404 (542)
+...++.+=+|-|.+.|||+.| + +.+|+.+ |-++|.++++
T Consensus 104 -----lp~~d~sfD~v~~~~~l~~~~d-------~-~~~l~e~~RvLkp~~~il 144 (226)
T PRK05785 104 -----LPFRDKSFDVVMSSFALHASDN-------I-EKVIAEFTRVSRKQVGFI 144 (226)
T ss_pred -----CCCCCCCEEEEEecChhhccCC-------H-HHHHHHHHHHhcCceEEE
Confidence 3333344556667778888754 2 4566666 6689965443
No 22
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=81.48 E-value=16 Score=35.40 Aligned_cols=111 Identities=14% Similarity=0.189 Sum_probs=61.1
Q ss_pred HHhHHHHhhhccCCeeEEEEeecccccchHHHHHHHhcCCCCCCeEEEeeecCCCCCCCChHHHHHHHHHHHHHHHhcCC
Q 046158 258 FTIKMIMKVSEKASTLHIVDFGIRYGFQWPMLIQFLSMRTGGPPRLRITGIELPQPGFRPAERIEETGRRLLKYCQRFNV 337 (542)
Q Consensus 258 ~ANqaIleA~~g~~~VHIIDfgI~~G~QWp~Liq~LA~R~gGPP~LRITgI~~p~~gf~p~~~leetG~rL~~~A~~~gV 337 (542)
.+...|++++.-...-+|+|+|-|.|.--. .||.+ | .++||||.. ...++.+. +.++..|+
T Consensus 17 ~~~~~l~~~~~~~~~~~vLDiGcG~G~~a~----~la~~-g----~~V~~iD~s------~~~l~~a~----~~~~~~~~ 77 (195)
T TIGR00477 17 TTHSAVREAVKTVAPCKTLDLGCGQGRNSL----YLSLA-G----YDVRAWDHN------PASIASVL----DMKARENL 77 (195)
T ss_pred CchHHHHHHhccCCCCcEEEeCCCCCHHHH----HHHHC-C----CeEEEEECC------HHHHHHHH----HHHHHhCC
Confidence 456677777765556799999999996433 34444 3 479999963 23343333 34455577
Q ss_pred cEEEEEeeCCCcccccccccccCCCceEEEEecccccccccccccCCCchHHHHHHH-HhhCCCEE
Q 046158 338 PFEYNCIASQNWETIQIEDLKINPDEVLAVNSLFRFKNLLDETVDVNCPRNSVLKLI-RKIKPDIF 402 (542)
Q Consensus 338 pFeF~~I~~~~~E~l~~~dL~i~~~E~LaVN~~~~L~~L~des~~~~sprd~vL~~I-r~L~P~V~ 402 (542)
+..+.... .+... +. ..=++++.+ +.||++.++ .+..+++.+ +.|+|.-.
T Consensus 78 ~v~~~~~d---~~~~~---~~-~~fD~I~~~--~~~~~~~~~------~~~~~l~~~~~~LkpgG~ 128 (195)
T TIGR00477 78 PLRTDAYD---INAAA---LN-EDYDFIFST--VVFMFLQAG------RVPEIIANMQAHTRPGGY 128 (195)
T ss_pred CceeEecc---chhcc---cc-CCCCEEEEe--cccccCCHH------HHHHHHHHHHHHhCCCcE
Confidence 64443322 22211 11 111344333 345666431 345667665 56899854
No 23
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=80.16 E-value=4.6 Score=41.27 Aligned_cols=99 Identities=22% Similarity=0.308 Sum_probs=65.9
Q ss_pred CCeeEEEEeecccccchHHHHHHHhcCCCCCCeEEEeeecCCCCCCCChHHHHHHHHHHHHHHHhcCCcEEEEEeeCCCc
Q 046158 270 ASTLHIVDFGIRYGFQWPMLIQFLSMRTGGPPRLRITGIELPQPGFRPAERIEETGRRLLKYCQRFNVPFEYNCIASQNW 349 (542)
Q Consensus 270 ~~~VHIIDfgI~~G~QWp~Liq~LA~R~gGPP~LRITgI~~p~~gf~p~~~leetG~rL~~~A~~~gVpFeF~~I~~~~~ 349 (542)
-..+-|.|+|-+-| .|-+.||+. | ..+||||... ..|+.+. ..|.+-||..+|....
T Consensus 58 l~g~~vLDvGCGgG----~Lse~mAr~-G----a~VtgiD~se------~~I~~Ak----~ha~e~gv~i~y~~~~---- 114 (243)
T COG2227 58 LPGLRVLDVGCGGG----ILSEPLARL-G----ASVTGIDASE------KPIEVAK----LHALESGVNIDYRQAT---- 114 (243)
T ss_pred CCCCeEEEecCCcc----HhhHHHHHC-C----CeeEEecCCh------HHHHHHH----Hhhhhccccccchhhh----
Confidence 35577999999988 777888854 4 8999999632 2233332 2466677776666655
Q ss_pred ccccccccccCCCceEEEEecccccccccccccCCCchHHHHHHHHhhCCCEE
Q 046158 350 ETIQIEDLKINPDEVLAVNSLFRFKNLLDETVDVNCPRNSVLKLIRKIKPDIF 402 (542)
Q Consensus 350 E~l~~~dL~i~~~E~LaVN~~~~L~~L~des~~~~sprd~vL~~Ir~L~P~V~ 402 (542)
.+||.-..+-.=||-|+=-|+|+.| |..-+....+-++|.-.
T Consensus 115 ----~edl~~~~~~FDvV~cmEVlEHv~d-------p~~~~~~c~~lvkP~G~ 156 (243)
T COG2227 115 ----VEDLASAGGQFDVVTCMEVLEHVPD-------PESFLRACAKLVKPGGI 156 (243)
T ss_pred ----HHHHHhcCCCccEEEEhhHHHccCC-------HHHHHHHHHHHcCCCcE
Confidence 3444332244558899999999976 55545555577899744
No 24
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=78.52 E-value=4.5 Score=34.48 Aligned_cols=103 Identities=22% Similarity=0.277 Sum_probs=55.4
Q ss_pred EEEEeecccccchHHHHHHHhcCCCCCCeEEEeeecCCCCCCCChHHHHHHHHHHHHHHHhcCCcEEEEEeeCCCccccc
Q 046158 274 HIVDFGIRYGFQWPMLIQFLSMRTGGPPRLRITGIELPQPGFRPAERIEETGRRLLKYCQRFNVPFEYNCIASQNWETIQ 353 (542)
Q Consensus 274 HIIDfgI~~G~QWp~Liq~LA~R~gGPP~LRITgI~~p~~gf~p~~~leetG~rL~~~A~~~gVpFeF~~I~~~~~E~l~ 353 (542)
+|+|+|-+.|. +...|+++. |..++||||.. .+.++.+.+++.+....-+| +|.. ..+ .
T Consensus 4 ~vLDlGcG~G~----~~~~l~~~~---~~~~v~gvD~s------~~~~~~a~~~~~~~~~~~~i--~~~~---~d~-~-- 62 (112)
T PF12847_consen 4 RVLDLGCGTGR----LSIALARLF---PGARVVGVDIS------PEMLEIARERAAEEGLSDRI--TFVQ---GDA-E-- 62 (112)
T ss_dssp EEEEETTTTSH----HHHHHHHHH---TTSEEEEEESS------HHHHHHHHHHHHHTTTTTTE--EEEE---SCC-H--
T ss_pred EEEEEcCcCCH----HHHHHHhcC---CCCEEEEEeCC------HHHHHHHHHHHHhcCCCCCe--EEEE---Ccc-c--
Confidence 68999999983 333444422 34789999963 45677777776443333333 3333 222 1
Q ss_pred cccccc-CCCceEEEEecccccccccccccCCCchHHHHHHH-HhhCCCEEEE
Q 046158 354 IEDLKI-NPDEVLAVNSLFRFKNLLDETVDVNCPRNSVLKLI-RKIKPDIFVN 404 (542)
Q Consensus 354 ~~dL~i-~~~E~LaVN~~~~L~~L~des~~~~sprd~vL~~I-r~L~P~V~v~ 404 (542)
.+... .+=++++.+. +.++++.+. ..+..+|+.+ +.|+|.-.++
T Consensus 63 -~~~~~~~~~D~v~~~~-~~~~~~~~~-----~~~~~~l~~~~~~L~pgG~lv 108 (112)
T PF12847_consen 63 -FDPDFLEPFDLVICSG-FTLHFLLPL-----DERRRVLERIRRLLKPGGRLV 108 (112)
T ss_dssp -GGTTTSSCEEEEEECS-GSGGGCCHH-----HHHHHHHHHHHHHEEEEEEEE
T ss_pred -cCcccCCCCCEEEECC-Cccccccch-----hHHHHHHHHHHHhcCCCcEEE
Confidence 11111 1123455544 456666542 1245667666 5689986544
No 25
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=78.18 E-value=18 Score=37.32 Aligned_cols=139 Identities=17% Similarity=0.267 Sum_probs=73.9
Q ss_pred hhHHHHhHHHHhhhcc----CCeeEEEEeeccccc-chHHHHHHHhcCCCCCCeEEEeeecCCCCCCCChHHHHHHHHHH
Q 046158 254 LAIMFTIKMIMKVSEK----ASTLHIVDFGIRYGF-QWPMLIQFLSMRTGGPPRLRITGIELPQPGFRPAERIEETGRRL 328 (542)
Q Consensus 254 fa~~~ANqaIleA~~g----~~~VHIIDfgI~~G~-QWp~Liq~LA~R~gGPP~LRITgI~~p~~gf~p~~~leetG~rL 328 (542)
-+++.+-..||+.+.. -.--+|+|||-|-|. =|.. ...- |-...+|.||.. ....+.|++|
T Consensus 12 p~~YA~~~~vl~El~~r~p~f~P~~vLD~GsGpGta~wAa----~~~~---~~~~~~~~vd~s-------~~~~~l~~~l 77 (274)
T PF09243_consen 12 PATYAAVYRVLSELRKRLPDFRPRSVLDFGSGPGTALWAA----REVW---PSLKEYTCVDRS-------PEMLELAKRL 77 (274)
T ss_pred hHHHHHHHHHHHHHHHhCcCCCCceEEEecCChHHHHHHH----HHHh---cCceeeeeecCC-------HHHHHHHHHH
Confidence 3566777777777753 345689999999874 2322 1111 134689999853 3456677777
Q ss_pred HHHHHhcCCcEEEEEeeCCCcccccccccccCCCceEEEEecccccccccccccCCCchHHHHHHH-HhhCCCEEEEEee
Q 046158 329 LKYCQRFNVPFEYNCIASQNWETIQIEDLKINPDEVLAVNSLFRFKNLLDETVDVNCPRNSVLKLI-RKIKPDIFVNSIV 407 (542)
Q Consensus 329 ~~~A~~~gVpFeF~~I~~~~~E~l~~~dL~i~~~E~LaVN~~~~L~~L~des~~~~sprd~vL~~I-r~L~P~V~v~~e~ 407 (542)
.+-...... .+.. ..+..+...+.+.+.|+ +.|.|..|.+ ..|..+++.+ ..++| ++|++|.
T Consensus 78 ~~~~~~~~~-~~~~-------~~~~~~~~~~~~~DLvi--~s~~L~EL~~------~~r~~lv~~LW~~~~~-~LVlVEp 140 (274)
T PF09243_consen 78 LRAGPNNRN-AEWR-------RVLYRDFLPFPPDDLVI--ASYVLNELPS------AARAELVRSLWNKTAP-VLVLVEP 140 (274)
T ss_pred Hhccccccc-chhh-------hhhhcccccCCCCcEEE--EehhhhcCCc------hHHHHHHHHHHHhccC-cEEEEcC
Confidence 653321110 0010 11112223333333333 2334444443 3466777777 55666 5555544
Q ss_pred cCCCCCCchHHHHHHHH
Q 046158 408 NGSYNAPFFVTRFREAI 424 (542)
Q Consensus 408 ~~~~nsp~F~~RF~EAL 424 (542)
|+...-..+.+.|+.|
T Consensus 141 -Gt~~Gf~~i~~aR~~l 156 (274)
T PF09243_consen 141 -GTPAGFRRIAEARDQL 156 (274)
T ss_pred -CChHHHHHHHHHHHHH
Confidence 6555545677777776
No 26
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=77.57 E-value=6 Score=40.43 Aligned_cols=52 Identities=15% Similarity=0.201 Sum_probs=34.6
Q ss_pred cCCeeEEEEeecccccchHHHHHHHhcCC--CCCCeEEEeeecCCCCCCCChHHHHHHHH
Q 046158 269 KASTLHIVDFGIRYGFQWPMLIQFLSMRT--GGPPRLRITGIELPQPGFRPAERIEETGR 326 (542)
Q Consensus 269 g~~~VHIIDfgI~~G~QWp~Liq~LA~R~--gGPP~LRITgI~~p~~gf~p~~~leetG~ 326 (542)
..+.++|.|.|-+.|--.-+|--.|++.- ...+..+|||+|.. ...|+.+.+
T Consensus 97 ~~~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis------~~~L~~Ar~ 150 (264)
T smart00138 97 HGRRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDID------LKALEKARA 150 (264)
T ss_pred CCCCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECC------HHHHHHHHc
Confidence 34569999999999976665555555432 12347899999974 344555544
No 27
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=77.48 E-value=30 Score=33.51 Aligned_cols=109 Identities=12% Similarity=0.145 Sum_probs=56.9
Q ss_pred hHHHHhhhccCCeeEEEEeecccccchHHHHHHHhcCCCCCCeEEEeeecCCCCCCCChHHHHHHHHHHHHHHHhcCCc-
Q 046158 260 IKMIMKVSEKASTLHIVDFGIRYGFQWPMLIQFLSMRTGGPPRLRITGIELPQPGFRPAERIEETGRRLLKYCQRFNVP- 338 (542)
Q Consensus 260 NqaIleA~~g~~~VHIIDfgI~~G~QWp~Liq~LA~R~gGPP~LRITgI~~p~~gf~p~~~leetG~rL~~~A~~~gVp- 338 (542)
.+.+++.+.....-+|+|+|-+.|. +...||.+ | .+|||||.. .+.++.+.++ ++..+++
T Consensus 19 ~~~l~~~l~~~~~~~vLDiGcG~G~----~a~~La~~-g----~~V~gvD~S------~~~i~~a~~~----~~~~~~~~ 79 (197)
T PRK11207 19 HSEVLEAVKVVKPGKTLDLGCGNGR----NSLYLAAN-G----FDVTAWDKN------PMSIANLERI----KAAENLDN 79 (197)
T ss_pred hHHHHHhcccCCCCcEEEECCCCCH----HHHHHHHC-C----CEEEEEeCC------HHHHHHHHHH----HHHcCCCc
Confidence 3455555544445689999999986 33446655 2 389999963 2334443332 3334553
Q ss_pred EEEEEeeCCCcccccccccccCCCceEEEEecccccccccccccCCCchHHHHHHH-HhhCCCEE
Q 046158 339 FEYNCIASQNWETIQIEDLKINPDEVLAVNSLFRFKNLLDETVDVNCPRNSVLKLI-RKIKPDIF 402 (542)
Q Consensus 339 FeF~~I~~~~~E~l~~~dL~i~~~E~LaVN~~~~L~~L~des~~~~sprd~vL~~I-r~L~P~V~ 402 (542)
.++ +. ..++++.. . ..=.+++.+ +.+|++.++ .+..+++.+ +.|+|.-.
T Consensus 80 v~~--~~-~d~~~~~~---~-~~fD~I~~~--~~~~~~~~~------~~~~~l~~i~~~LkpgG~ 129 (197)
T PRK11207 80 LHT--AV-VDLNNLTF---D-GEYDFILST--VVLMFLEAK------TIPGLIANMQRCTKPGGY 129 (197)
T ss_pred ceE--Ee-cChhhCCc---C-CCcCEEEEe--cchhhCCHH------HHHHHHHHHHHHcCCCcE
Confidence 232 22 22333221 1 111234433 445666432 245566655 66899865
No 28
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=76.81 E-value=17 Score=38.69 Aligned_cols=136 Identities=20% Similarity=0.259 Sum_probs=71.1
Q ss_pred HHHHhHHHHhhhcc----CCeeEEEEeecccccchHHHHHHHhcCCCCCCeEEEeeecCCCCCCCChHHHHHHHHHHHHH
Q 046158 256 IMFTIKMIMKVSEK----ASTLHIVDFGIRYGFQWPMLIQFLSMRTGGPPRLRITGIELPQPGFRPAERIEETGRRLLKY 331 (542)
Q Consensus 256 ~~~ANqaIleA~~g----~~~VHIIDfgI~~G~QWp~Liq~LA~R~gGPP~LRITgI~~p~~gf~p~~~leetG~rL~~~ 331 (542)
+..-..-|-+.+.. ....+|+|+|.|.|. .|.+....+ + =.+.|||.. .+.|+++.+|..+.
T Consensus 43 NwvKs~LI~~~~~~~~~~~~~~~VLDl~CGkGG---DL~Kw~~~~---i--~~~vg~Dis------~~si~ea~~Ry~~~ 108 (331)
T PF03291_consen 43 NWVKSVLIQKYAKKVKQNRPGLTVLDLCCGKGG---DLQKWQKAK---I--KHYVGIDIS------EESIEEARERYKQL 108 (331)
T ss_dssp HHHHHHHHHHHCHCCCCTTTT-EEEEET-TTTT---THHHHHHTT------SEEEEEES-------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhccCCCCeEEEecCCCch---hHHHHHhcC---C--CEEEEEeCC------HHHHHHHHHHHHHh
Confidence 44444455555532 277999999999883 344444332 2 356788863 67899999998665
Q ss_pred HHh-----cCCcEEEEEeeCCCcccccccccccCCCceEEEEecccccccccccccCCCchHHHHHHH-HhhCCCE-EEE
Q 046158 332 CQR-----FNVPFEYNCIASQNWETIQIEDLKINPDEVLAVNSLFRFKNLLDETVDVNCPRNSVLKLI-RKIKPDI-FVN 404 (542)
Q Consensus 332 A~~-----~gVpFeF~~I~~~~~E~l~~~dL~i~~~E~LaVN~~~~L~~L~des~~~~sprd~vL~~I-r~L~P~V-~v~ 404 (542)
-+. .+..|.-.-+.......--.+.+.-.....=+|+|+|.||+..... .-...+|++| ..|+|.- ||-
T Consensus 109 ~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~~~~~~~FDvVScQFalHY~Fese----~~ar~~l~Nvs~~Lk~GG~FIg 184 (331)
T PF03291_consen 109 KKRNNSKQYRFDFIAEFIAADCFSESLREKLPPRSRKFDVVSCQFALHYAFESE----EKARQFLKNVSSLLKPGGYFIG 184 (331)
T ss_dssp HTSTT-HTSEECCEEEEEESTTCCSHHHCTSSSTTS-EEEEEEES-GGGGGSSH----HHHHHHHHHHHHTEEEEEEEEE
T ss_pred ccccccccccccchhheeccccccchhhhhccccCCCcceeehHHHHHHhcCCH----HHHHHHHHHHHHhcCCCCEEEE
Confidence 432 1222332333321111100111222224677999999999987421 1223456555 6789975 444
Q ss_pred EeecC
Q 046158 405 SIVNG 409 (542)
Q Consensus 405 ~e~~~ 409 (542)
+.+++
T Consensus 185 T~~d~ 189 (331)
T PF03291_consen 185 TTPDS 189 (331)
T ss_dssp EEE-H
T ss_pred EecCH
Confidence 54544
No 29
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=76.14 E-value=59 Score=32.57 Aligned_cols=111 Identities=16% Similarity=0.103 Sum_probs=60.5
Q ss_pred HHHhhhccCCeeEEEEeecccccchHHHHHHHhcCCCCCCeEEEeeecCCCCCCCChHHHHHHHHHHHHHHHhcCCcEEE
Q 046158 262 MIMKVSEKASTLHIVDFGIRYGFQWPMLIQFLSMRTGGPPRLRITGIELPQPGFRPAERIEETGRRLLKYCQRFNVPFEY 341 (542)
Q Consensus 262 aIleA~~g~~~VHIIDfgI~~G~QWp~Liq~LA~R~gGPP~LRITgI~~p~~gf~p~~~leetG~rL~~~A~~~gVpFeF 341 (542)
.|++.+. .+.-+|+|+|-+.|. +...|+.+ | .++||||.. .+.++.+.+++ +..|+.-..
T Consensus 36 ~~l~~l~-~~~~~vLDiGcG~G~----~a~~la~~-g----~~v~~vD~s------~~~l~~a~~~~----~~~g~~~~v 95 (255)
T PRK11036 36 RLLAELP-PRPLRVLDAGGGEGQ----TAIKLAEL-G----HQVILCDLS------AEMIQRAKQAA----EAKGVSDNM 95 (255)
T ss_pred HHHHhcC-CCCCEEEEeCCCchH----HHHHHHHc-C----CEEEEEECC------HHHHHHHHHHH----HhcCCccce
Confidence 4666654 345699999999993 45556655 2 489999863 34455554443 334543222
Q ss_pred EEeeCCCcccccccccccCCCceEEEEecccccccccccccCCCchHHHHHHHHhhCCCEEEE
Q 046158 342 NCIASQNWETIQIEDLKINPDEVLAVNSLFRFKNLLDETVDVNCPRNSVLKLIRKIKPDIFVN 404 (542)
Q Consensus 342 ~~I~~~~~E~l~~~dL~i~~~E~LaVN~~~~L~~L~des~~~~sprd~vL~~Ir~L~P~V~v~ 404 (542)
..+. ...+++.. ..++.+=+|-|...|+|+.+ |...+-...+-|+|.-.+.
T Consensus 96 ~~~~-~d~~~l~~----~~~~~fD~V~~~~vl~~~~~-------~~~~l~~~~~~LkpgG~l~ 146 (255)
T PRK11036 96 QFIH-CAAQDIAQ----HLETPVDLILFHAVLEWVAD-------PKSVLQTLWSVLRPGGALS 146 (255)
T ss_pred EEEE-cCHHHHhh----hcCCCCCEEEehhHHHhhCC-------HHHHHHHHHHHcCCCeEEE
Confidence 2222 23333321 11122223345566777743 4444455557799986543
No 30
>PLN02244 tocopherol O-methyltransferase
Probab=75.24 E-value=42 Score=35.51 Aligned_cols=97 Identities=16% Similarity=0.203 Sum_probs=54.5
Q ss_pred CeeEEEEeecccccchHHHHHHHhcCCCCCCeEEEeeecCCCCCCCChHHHHHHHHHHHHHHHhcCCc--EEEEEeeCCC
Q 046158 271 STLHIVDFGIRYGFQWPMLIQFLSMRTGGPPRLRITGIELPQPGFRPAERIEETGRRLLKYCQRFNVP--FEYNCIASQN 348 (542)
Q Consensus 271 ~~VHIIDfgI~~G~QWp~Liq~LA~R~gGPP~LRITgI~~p~~gf~p~~~leetG~rL~~~A~~~gVp--FeF~~I~~~~ 348 (542)
..-+|+|+|-+.|. +...|+.+.| .++|||+.. ...++.+. +.++..|++ .+|.. ..
T Consensus 118 ~~~~VLDiGCG~G~----~~~~La~~~g----~~v~gvD~s------~~~i~~a~----~~~~~~g~~~~v~~~~---~D 176 (340)
T PLN02244 118 RPKRIVDVGCGIGG----SSRYLARKYG----ANVKGITLS------PVQAARAN----ALAAAQGLSDKVSFQV---AD 176 (340)
T ss_pred CCCeEEEecCCCCH----HHHHHHHhcC----CEEEEEECC------HHHHHHHH----HHHHhcCCCCceEEEE---cC
Confidence 34579999999884 4556666543 489999863 23333332 234444542 44432 22
Q ss_pred cccccccccccCCCceEEEEecccccccccccccCCCchHHHHH-HHHhhCCCE
Q 046158 349 WETIQIEDLKINPDEVLAVNSLFRFKNLLDETVDVNCPRNSVLK-LIRKIKPDI 401 (542)
Q Consensus 349 ~E~l~~~dL~i~~~E~LaVN~~~~L~~L~des~~~~sprd~vL~-~Ir~L~P~V 401 (542)
..++ ...++.+=+|-|...++|+.| + ..+|+ ..|-|+|.-
T Consensus 177 ~~~~-----~~~~~~FD~V~s~~~~~h~~d-------~-~~~l~e~~rvLkpGG 217 (340)
T PLN02244 177 ALNQ-----PFEDGQFDLVWSMESGEHMPD-------K-RKFVQELARVAAPGG 217 (340)
T ss_pred cccC-----CCCCCCccEEEECCchhccCC-------H-HHHHHHHHHHcCCCc
Confidence 2222 222333445566677888865 2 34554 457789974
No 31
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=74.85 E-value=10 Score=30.67 Aligned_cols=92 Identities=25% Similarity=0.292 Sum_probs=50.5
Q ss_pred EEeecccccchHHHHHHHhcCCCCCCeEEEeeecCCCCCCCChHHHHHHHHHHHHHHHhcCCcEEEEEeeCCCccccccc
Q 046158 276 VDFGIRYGFQWPMLIQFLSMRTGGPPRLRITGIELPQPGFRPAERIEETGRRLLKYCQRFNVPFEYNCIASQNWETIQIE 355 (542)
Q Consensus 276 IDfgI~~G~QWp~Liq~LA~R~gGPP~LRITgI~~p~~gf~p~~~leetG~rL~~~A~~~gVpFeF~~I~~~~~E~l~~~ 355 (542)
+|+|.+.|.....|.+. +-.++|+||.. .+.++.+.++ ....+++ | +. . +.+
T Consensus 1 LdiG~G~G~~~~~l~~~--------~~~~v~~~D~~------~~~~~~~~~~----~~~~~~~--~--~~-~-----d~~ 52 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKR--------GGASVTGIDIS------EEMLEQARKR----LKNEGVS--F--RQ-G-----DAE 52 (95)
T ss_dssp EEET-TTSHHHHHHHHT--------TTCEEEEEES-------HHHHHHHHHH----TTTSTEE--E--EE-S-----BTT
T ss_pred CEecCcCCHHHHHHHhc--------cCCEEEEEeCC------HHHHHHHHhc----ccccCch--h--ee-e-----hHH
Confidence 58888888766665554 34789999863 2334333332 2333444 1 11 2 234
Q ss_pred ccccCCCceEEEEecccccccccccccCCCchHHHHHHH-HhhCCCEEE
Q 046158 356 DLKINPDEVLAVNSLFRFKNLLDETVDVNCPRNSVLKLI-RKIKPDIFV 403 (542)
Q Consensus 356 dL~i~~~E~LaVN~~~~L~~L~des~~~~sprd~vL~~I-r~L~P~V~v 403 (542)
++.+.++-+=+|-|...++|+. .+ ..+++.+ |-|+|.-+.
T Consensus 53 ~l~~~~~sfD~v~~~~~~~~~~-------~~-~~~l~e~~rvLk~gG~l 93 (95)
T PF08241_consen 53 DLPFPDNSFDVVFSNSVLHHLE-------DP-EAALREIYRVLKPGGRL 93 (95)
T ss_dssp SSSS-TT-EEEEEEESHGGGSS-------HH-HHHHHHHHHHEEEEEEE
T ss_pred hCccccccccccccccceeecc-------CH-HHHHHHHHHHcCcCeEE
Confidence 4555556666777888888882 23 4455444 668887543
No 32
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=72.55 E-value=46 Score=34.56 Aligned_cols=109 Identities=16% Similarity=0.198 Sum_probs=64.8
Q ss_pred eEEEEeecccccchHHHHHHHhcCCCCCCeEEEeeecCCCCCCCChHHHHHHHHHHHHHHHhcCCcEEEEEeeCCCccc-
Q 046158 273 LHIVDFGIRYGFQWPMLIQFLSMRTGGPPRLRITGIELPQPGFRPAERIEETGRRLLKYCQRFNVPFEYNCIASQNWET- 351 (542)
Q Consensus 273 VHIIDfgI~~G~QWp~Liq~LA~R~gGPP~LRITgI~~p~~gf~p~~~leetG~rL~~~A~~~gVpFeF~~I~~~~~E~- 351 (542)
..|||+|-|.|.-=..|++++.. ..++|+||.+ .+.|+.+.++|..- --++++ ..|. ....+
T Consensus 65 ~~iLELGcGtG~~t~~Ll~~l~~------~~~~~~iDiS------~~mL~~a~~~l~~~--~p~~~v--~~i~-gD~~~~ 127 (301)
T TIGR03438 65 CELVELGSGSSRKTRLLLDALRQ------PARYVPIDIS------ADALKESAAALAAD--YPQLEV--HGIC-ADFTQP 127 (301)
T ss_pred CeEEecCCCcchhHHHHHHhhcc------CCeEEEEECC------HHHHHHHHHHHHhh--CCCceE--EEEE-Ecccch
Confidence 57999999999766667777642 3789999974 56688888887641 123443 3343 22221
Q ss_pred ccccccccCCCceEEEEecccccccccccccCCCchHHHHHHHH-hhCCC-EEEEE
Q 046158 352 IQIEDLKINPDEVLAVNSLFRFKNLLDETVDVNCPRNSVLKLIR-KIKPD-IFVNS 405 (542)
Q Consensus 352 l~~~dL~i~~~E~LaVN~~~~L~~L~des~~~~sprd~vL~~Ir-~L~P~-V~v~~ 405 (542)
+.... ....+..+++.+...++|+..+. ...+|+.|+ .|+|. +|+++
T Consensus 128 ~~~~~-~~~~~~~~~~~~gs~~~~~~~~e------~~~~L~~i~~~L~pgG~~lig 176 (301)
T TIGR03438 128 LALPP-EPAAGRRLGFFPGSTIGNFTPEE------AVAFLRRIRQLLGPGGGLLIG 176 (301)
T ss_pred hhhhc-ccccCCeEEEEecccccCCCHHH------HHHHHHHHHHhcCCCCEEEEe
Confidence 11000 11112466776666777775321 346777774 68996 55543
No 33
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=70.26 E-value=94 Score=31.61 Aligned_cols=47 Identities=15% Similarity=0.301 Sum_probs=32.0
Q ss_pred HHHHhHHHHhhhccCCeeEEEEeecccccchHHHHHHHhcCCCCCCeEEEeeecC
Q 046158 256 IMFTIKMIMKVSEKASTLHIVDFGIRYGFQWPMLIQFLSMRTGGPPRLRITGIEL 310 (542)
Q Consensus 256 ~~~ANqaIleA~~g~~~VHIIDfgI~~G~QWp~Liq~LA~R~gGPP~LRITgI~~ 310 (542)
-.-+.+.|++.+.-.+.-+|+|+|-+.|.-- ..|+.+.+ .++|||+.
T Consensus 37 g~~~~~~~l~~l~l~~~~~VLDiGcG~G~~a----~~la~~~~----~~v~giD~ 83 (263)
T PTZ00098 37 GIEATTKILSDIELNENSKVLDIGSGLGGGC----KYINEKYG----AHVHGVDI 83 (263)
T ss_pred chHHHHHHHHhCCCCCCCEEEEEcCCCChhh----HHHHhhcC----CEEEEEEC
Confidence 3345667777776566678999999998732 34444332 48999996
No 34
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=70.16 E-value=46 Score=35.21 Aligned_cols=103 Identities=15% Similarity=0.195 Sum_probs=58.3
Q ss_pred CeeEEEEeecccccchHHHHHHHhcCCCCCCeEEEeeecCCCCCCCChHHHHHHHHHHHHHH-Hhc-CCcEEEEEeeCCC
Q 046158 271 STLHIVDFGIRYGFQWPMLIQFLSMRTGGPPRLRITGIELPQPGFRPAERIEETGRRLLKYC-QRF-NVPFEYNCIASQN 348 (542)
Q Consensus 271 ~~VHIIDfgI~~G~QWp~Liq~LA~R~gGPP~LRITgI~~p~~gf~p~~~leetG~rL~~~A-~~~-gVpFeF~~I~~~~ 348 (542)
+...|+|+|-|.|. +...|+.+ | .+|||||.. ...++.+.++..+.- ... +...+|... .
T Consensus 144 ~~~~VLDlGcGtG~----~a~~la~~-g----~~V~gvD~S------~~ml~~A~~~~~~~~~~~~~~~~~~f~~~---D 205 (315)
T PLN02585 144 AGVTVCDAGCGTGS----LAIPLALE-G----AIVSASDIS------AAMVAEAERRAKEALAALPPEVLPKFEAN---D 205 (315)
T ss_pred CCCEEEEecCCCCH----HHHHHHHC-C----CEEEEEECC------HHHHHHHHHHHHhcccccccccceEEEEc---c
Confidence 45689999999885 44556554 3 489999964 345666655543221 001 123344332 2
Q ss_pred cccccccccccCCCceEEEEecccccccccccccCCCchHHHHHHHHhhCCCEEEEE
Q 046158 349 WETIQIEDLKINPDEVLAVNSLFRFKNLLDETVDVNCPRNSVLKLIRKIKPDIFVNS 405 (542)
Q Consensus 349 ~E~l~~~dL~i~~~E~LaVN~~~~L~~L~des~~~~sprd~vL~~Ir~L~P~V~v~~ 405 (542)
++++ . +..=+|-|...|+|+.++ ....+++.++++.|..++++
T Consensus 206 l~~l-----~---~~fD~Vv~~~vL~H~p~~------~~~~ll~~l~~l~~g~liIs 248 (315)
T PLN02585 206 LESL-----S---GKYDTVTCLDVLIHYPQD------KADGMIAHLASLAEKRLIIS 248 (315)
T ss_pred hhhc-----C---CCcCEEEEcCEEEecCHH------HHHHHHHHHHhhcCCEEEEE
Confidence 3322 1 111133355667787653 33567888888888877664
No 35
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=69.44 E-value=73 Score=34.97 Aligned_cols=113 Identities=12% Similarity=0.161 Sum_probs=58.4
Q ss_pred HHHHhhhccCCeeEEEEeecccccchHHHHHHHhcCCCCCCeEEEeeecCCCCCCCChHHHHHHHHHHHHHHHhcCCcEE
Q 046158 261 KMIMKVSEKASTLHIVDFGIRYGFQWPMLIQFLSMRTGGPPRLRITGIELPQPGFRPAERIEETGRRLLKYCQRFNVPFE 340 (542)
Q Consensus 261 qaIleA~~g~~~VHIIDfgI~~G~QWp~Liq~LA~R~gGPP~LRITgI~~p~~gf~p~~~leetG~rL~~~A~~~gVpFe 340 (542)
..|++.+.....-+|+|+|-|.|.-- ..|+.+. -++||||.. ...++.. +.+. ...-..+
T Consensus 27 ~~il~~l~~~~~~~vLDlGcG~G~~~----~~la~~~-----~~v~giD~s------~~~l~~a-~~~~----~~~~~i~ 86 (475)
T PLN02336 27 PEILSLLPPYEGKSVLELGAGIGRFT----GELAKKA-----GQVIALDFI------ESVIKKN-ESIN----GHYKNVK 86 (475)
T ss_pred hHHHhhcCccCCCEEEEeCCCcCHHH----HHHHhhC-----CEEEEEeCC------HHHHHHH-HHHh----ccCCceE
Confidence 45566665444458999999999433 3455442 178999963 2334332 1111 1111223
Q ss_pred EEEeeCCCcccccccccccCCCceEEEEecccccccccccccCCCchHHHHHHH-HhhCCCEEEEE
Q 046158 341 YNCIASQNWETIQIEDLKINPDEVLAVNSLFRFKNLLDETVDVNCPRNSVLKLI-RKIKPDIFVNS 405 (542)
Q Consensus 341 F~~I~~~~~E~l~~~dL~i~~~E~LaVN~~~~L~~L~des~~~~sprd~vL~~I-r~L~P~V~v~~ 405 (542)
|... ..++ .++...++.+=+|-|.+.+||+.++. ...+|..+ |-|+|.-.++.
T Consensus 87 ~~~~---d~~~---~~~~~~~~~fD~I~~~~~l~~l~~~~------~~~~l~~~~r~Lk~gG~l~~ 140 (475)
T PLN02336 87 FMCA---DVTS---PDLNISDGSVDLIFSNWLLMYLSDKE------VENLAERMVKWLKVGGYIFF 140 (475)
T ss_pred EEEe---cccc---cccCCCCCCEEEEehhhhHHhCCHHH------HHHHHHHHHHhcCCCeEEEE
Confidence 3221 1111 11222233344555666788986532 35666666 45899976543
No 36
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=68.47 E-value=48 Score=34.06 Aligned_cols=95 Identities=14% Similarity=0.276 Sum_probs=51.9
Q ss_pred EEEEeecccccchHHHHHHHhcCCCCCCeEEEeeecCCCCCCCChHHHHHHHHHHHHHHHhcCCcEEEEEeeCCCccccc
Q 046158 274 HIVDFGIRYGFQWPMLIQFLSMRTGGPPRLRITGIELPQPGFRPAERIEETGRRLLKYCQRFNVPFEYNCIASQNWETIQ 353 (542)
Q Consensus 274 HIIDfgI~~G~QWp~Liq~LA~R~gGPP~LRITgI~~p~~gf~p~~~leetG~rL~~~A~~~gVpFeF~~I~~~~~E~l~ 353 (542)
+|+|+|-|.|. +...||.+ | .++||||.. ...++ .+.+.|+..++++++... ..++..
T Consensus 123 ~vLDlGcG~G~----~~~~la~~-g----~~V~avD~s------~~ai~----~~~~~~~~~~l~v~~~~~---D~~~~~ 180 (287)
T PRK12335 123 KALDLGCGQGR----NSLYLALL-G----FDVTAVDIN------QQSLE----NLQEIAEKENLNIRTGLY---DINSAS 180 (287)
T ss_pred CEEEeCCCCCH----HHHHHHHC-C----CEEEEEECC------HHHHH----HHHHHHHHcCCceEEEEe---chhccc
Confidence 89999999986 33445654 3 589999963 23333 334455666776555332 122211
Q ss_pred ccccccCCCceEEEEecccccccccccccCCCchHHHHHHH-HhhCCCEE
Q 046158 354 IEDLKINPDEVLAVNSLFRFKNLLDETVDVNCPRNSVLKLI-RKIKPDIF 402 (542)
Q Consensus 354 ~~dL~i~~~E~LaVN~~~~L~~L~des~~~~sprd~vL~~I-r~L~P~V~ 402 (542)
+. ..=++++.+ +.||++.++ .+..+|+.+ +.++|.-.
T Consensus 181 ---~~-~~fD~I~~~--~vl~~l~~~------~~~~~l~~~~~~LkpgG~ 218 (287)
T PRK12335 181 ---IQ-EEYDFILST--VVLMFLNRE------RIPAIIKNMQEHTNPGGY 218 (287)
T ss_pred ---cc-CCccEEEEc--chhhhCCHH------HHHHHHHHHHHhcCCCcE
Confidence 11 111244433 346676432 234566665 56899854
No 37
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=67.77 E-value=32 Score=33.03 Aligned_cols=99 Identities=19% Similarity=0.293 Sum_probs=51.3
Q ss_pred CeeEEEEeecccccchHHHHHHHhcCCCCCCeEEEeeecCCCCCCCChHHHHHHHHHHHHHHHhcCCcEEEEEeeCCCcc
Q 046158 271 STLHIVDFGIRYGFQWPMLIQFLSMRTGGPPRLRITGIELPQPGFRPAERIEETGRRLLKYCQRFNVPFEYNCIASQNWE 350 (542)
Q Consensus 271 ~~VHIIDfgI~~G~QWp~Liq~LA~R~gGPP~LRITgI~~p~~gf~p~~~leetG~rL~~~A~~~gVpFeF~~I~~~~~E 350 (542)
+..+|+|+|-+.|. +...|+.+ + |..++|+||.. .+.++.+..++. . ++. | +. ...+
T Consensus 34 ~~~~vLDlG~G~G~----~~~~l~~~--~-~~~~~~~~D~~------~~~~~~~~~~~~----~-~~~--~--~~-~d~~ 90 (240)
T TIGR02072 34 IPASVLDIGCGTGY----LTRALLKR--F-PQAEFIALDIS------AGMLAQAKTKLS----E-NVQ--F--IC-GDAE 90 (240)
T ss_pred CCCeEEEECCCccH----HHHHHHHh--C-CCCcEEEEeCh------HHHHHHHHHhcC----C-CCe--E--Ee-cchh
Confidence 34789999999995 23344433 2 45779999963 233444433332 0 222 2 22 2333
Q ss_pred cccccccccCCCceEEEEecccccccccccccCCCchHHHHHHH-HhhCCCEEEEE
Q 046158 351 TIQIEDLKINPDEVLAVNSLFRFKNLLDETVDVNCPRNSVLKLI-RKIKPDIFVNS 405 (542)
Q Consensus 351 ~l~~~dL~i~~~E~LaVN~~~~L~~L~des~~~~sprd~vL~~I-r~L~P~V~v~~ 405 (542)
++. ..++-+=+|-|.+.|||+.| + ..+|..+ +.|+|+-+++.
T Consensus 91 ~~~-----~~~~~fD~vi~~~~l~~~~~-------~-~~~l~~~~~~L~~~G~l~~ 133 (240)
T TIGR02072 91 KLP-----LEDSSFDLIVSNLALQWCDD-------L-SQALSELARVLKPGGLLAF 133 (240)
T ss_pred hCC-----CCCCceeEEEEhhhhhhccC-------H-HHHHHHHHHHcCCCcEEEE
Confidence 322 11222223445556777643 3 3456655 56899865443
No 38
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=64.73 E-value=1.5e+02 Score=29.33 Aligned_cols=44 Identities=18% Similarity=0.444 Sum_probs=29.3
Q ss_pred HhHHHHhhhccCCeeEEEEeecccccchHHHHHHHhcCCCCCCeEEEeeecCC
Q 046158 259 TIKMIMKVSEKASTLHIVDFGIRYGFQWPMLIQFLSMRTGGPPRLRITGIELP 311 (542)
Q Consensus 259 ANqaIleA~~g~~~VHIIDfgI~~G~QWp~Liq~LA~R~gGPP~LRITgI~~p 311 (542)
.-..+++.+.....-+|+|+|.+.|. +.+.|+.+ | -++|+||..
T Consensus 30 ~a~~l~~~l~~~~~~~vLDiGcG~G~----~~~~l~~~-~----~~v~~~D~s 73 (251)
T PRK10258 30 SADALLAMLPQRKFTHVLDAGCGPGW----MSRYWRER-G----SQVTALDLS 73 (251)
T ss_pred HHHHHHHhcCccCCCeEEEeeCCCCH----HHHHHHHc-C----CeEEEEECC
Confidence 33445566654445579999999994 55566654 2 479999963
No 39
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=62.66 E-value=1.2e+02 Score=29.53 Aligned_cols=59 Identities=12% Similarity=0.146 Sum_probs=37.1
Q ss_pred HHHHhHHHHhhhc--cCCeeEEEEeecccccchHHHHHHHhcCCCCCCeEEEeeecCCCCCCCChHHHHHHHHHHH
Q 046158 256 IMFTIKMIMKVSE--KASTLHIVDFGIRYGFQWPMLIQFLSMRTGGPPRLRITGIELPQPGFRPAERIEETGRRLL 329 (542)
Q Consensus 256 ~~~ANqaIleA~~--g~~~VHIIDfgI~~G~QWp~Liq~LA~R~gGPP~LRITgI~~p~~gf~p~~~leetG~rL~ 329 (542)
+-.....+++.+. ..+.-+|+|+|-+.|. +...|+.+. .+|||||.. .+.++.+.+++.
T Consensus 38 ~~~~~~~~~~~l~~~~~~~~~vLDiGcG~G~----~~~~la~~~-----~~v~gvD~s------~~~i~~a~~~~~ 98 (219)
T TIGR02021 38 RAAMRRKLLDWLPKDPLKGKRVLDAGCGTGL----LSIELAKRG-----AIVKAVDIS------EQMVQMARNRAQ 98 (219)
T ss_pred HHHHHHHHHHHHhcCCCCCCEEEEEeCCCCH----HHHHHHHCC-----CEEEEEECC------HHHHHHHHHHHH
Confidence 4445556666665 2456799999999984 555666542 389999963 344555555543
No 40
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=60.97 E-value=57 Score=31.38 Aligned_cols=97 Identities=19% Similarity=0.254 Sum_probs=49.4
Q ss_pred eeEEEEeecccccchHHHHHHHhcCCCCCCeEEEeeecCCCCCCCChHHHHHHHHHHHHHHHhcCCc-EEEEEeeCCCcc
Q 046158 272 TLHIVDFGIRYGFQWPMLIQFLSMRTGGPPRLRITGIELPQPGFRPAERIEETGRRLLKYCQRFNVP-FEYNCIASQNWE 350 (542)
Q Consensus 272 ~VHIIDfgI~~G~QWp~Liq~LA~R~gGPP~LRITgI~~p~~gf~p~~~leetG~rL~~~A~~~gVp-FeF~~I~~~~~E 350 (542)
.-+|+|+|-|.|.- ... ||... |..++||||.. .+.++.+ .+.+++.|++ ++|. . ..++
T Consensus 43 ~~~vLDiGcGtG~~-s~~---la~~~---~~~~V~~iD~s------~~~~~~a----~~~~~~~~~~~i~~i--~-~d~~ 102 (181)
T TIGR00138 43 GKKVIDIGSGAGFP-GIP---LAIAR---PELKLTLLESN------HKKVAFL----REVKAELGLNNVEIV--N-GRAE 102 (181)
T ss_pred CCeEEEecCCCCcc-HHH---HHHHC---CCCeEEEEeCc------HHHHHHH----HHHHHHhCCCCeEEE--e-cchh
Confidence 34899999999831 111 22221 34689999963 2333333 3344556664 4443 3 3344
Q ss_pred cccccccccCCCceEEEEecccccccccccccCCCchHHHHHHH-HhhCCCEEEEEe
Q 046158 351 TIQIEDLKINPDEVLAVNSLFRFKNLLDETVDVNCPRNSVLKLI-RKIKPDIFVNSI 406 (542)
Q Consensus 351 ~l~~~dL~i~~~E~LaVN~~~~L~~L~des~~~~sprd~vL~~I-r~L~P~V~v~~e 406 (542)
++.. ..+=++++.|+ ++++ +.++..+ +-|+|.-.++..
T Consensus 103 ~~~~----~~~fD~I~s~~---~~~~-----------~~~~~~~~~~LkpgG~lvi~ 141 (181)
T TIGR00138 103 DFQH----EEQFDVITSRA---LASL-----------NVLLELTLNLLKVGGYFLAY 141 (181)
T ss_pred hccc----cCCccEEEehh---hhCH-----------HHHHHHHHHhcCCCCEEEEE
Confidence 4321 11123555554 3333 2345554 447898665543
No 41
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=60.85 E-value=1.7e+02 Score=28.54 Aligned_cols=101 Identities=23% Similarity=0.339 Sum_probs=51.2
Q ss_pred cCCeeEEEEeecccccchHHHHHHHhcCCCCCCeEEEeeecCCCCCCCChHHHHHHHHHHHHHHHhcCCcEEEEEeeCCC
Q 046158 269 KASTLHIVDFGIRYGFQWPMLIQFLSMRTGGPPRLRITGIELPQPGFRPAERIEETGRRLLKYCQRFNVPFEYNCIASQN 348 (542)
Q Consensus 269 g~~~VHIIDfgI~~G~QWp~Liq~LA~R~gGPP~LRITgI~~p~~gf~p~~~leetG~rL~~~A~~~gVpFeF~~I~~~~ 348 (542)
..+..+|+|+|.+.|. +...++.+ + .++|+|+.. ...++.+.+++. ..++..+|....
T Consensus 46 ~~~~~~vLdiG~G~G~----~~~~l~~~-~----~~v~~iD~s------~~~~~~a~~~~~----~~~~~~~~~~~~--- 103 (233)
T PRK05134 46 GLFGKRVLDVGCGGGI----LSESMARL-G----ADVTGIDAS------EENIEVARLHAL----ESGLKIDYRQTT--- 103 (233)
T ss_pred CCCCCeEEEeCCCCCH----HHHHHHHc-C----CeEEEEcCC------HHHHHHHHHHHH----HcCCceEEEecC---
Confidence 3456689999998875 33344443 2 369999863 334554544433 234444554322
Q ss_pred cccccccccccCCCceEEEEecccccccccccccCCCchHHHHHHH-HhhCCCEEE
Q 046158 349 WETIQIEDLKINPDEVLAVNSLFRFKNLLDETVDVNCPRNSVLKLI-RKIKPDIFV 403 (542)
Q Consensus 349 ~E~l~~~dL~i~~~E~LaVN~~~~L~~L~des~~~~sprd~vL~~I-r~L~P~V~v 403 (542)
++.+... ..+-.=+|-|..-++|+.+ +. .+|+.+ +-|+|.-.+
T Consensus 104 ~~~~~~~----~~~~fD~Ii~~~~l~~~~~-------~~-~~l~~~~~~L~~gG~l 147 (233)
T PRK05134 104 AEELAAE----HPGQFDVVTCMEMLEHVPD-------PA-SFVRACAKLVKPGGLV 147 (233)
T ss_pred HHHhhhh----cCCCccEEEEhhHhhccCC-------HH-HHHHHHHHHcCCCcEE
Confidence 3322110 1121223344455666543 33 455554 668887443
No 42
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=58.93 E-value=2e+02 Score=28.86 Aligned_cols=96 Identities=19% Similarity=0.350 Sum_probs=49.3
Q ss_pred eEEEEeecccccchHHHHHHHhcCCCCCCeEEEeeecCCCCCCCChHHHHHHHHHHHHHHHhcCCc-EEEEEeeCCCccc
Q 046158 273 LHIVDFGIRYGFQWPMLIQFLSMRTGGPPRLRITGIELPQPGFRPAERIEETGRRLLKYCQRFNVP-FEYNCIASQNWET 351 (542)
Q Consensus 273 VHIIDfgI~~G~QWp~Liq~LA~R~gGPP~LRITgI~~p~~gf~p~~~leetG~rL~~~A~~~gVp-FeF~~I~~~~~E~ 351 (542)
=+|+|+|.+.|.- ..+ ++... | +.-+|||||.. .+.++.+.++. +.+|++ .+| +. ..+++
T Consensus 79 ~~VLDiG~G~G~~-~~~---~a~~~-g-~~~~v~gvD~s------~~~l~~A~~~~----~~~g~~~v~~--~~-~d~~~ 139 (272)
T PRK11873 79 ETVLDLGSGGGFD-CFL---AARRV-G-PTGKVIGVDMT------PEMLAKARANA----RKAGYTNVEF--RL-GEIEA 139 (272)
T ss_pred CEEEEeCCCCCHH-HHH---HHHHh-C-CCCEEEEECCC------HHHHHHHHHHH----HHcCCCCEEE--EE-cchhh
Confidence 4899999988742 211 22222 2 44589999863 34455544433 334543 333 22 33444
Q ss_pred ccccccccCCC--ceEEEEecccccccccccccCCCchHHHHHHHHhhCCCE
Q 046158 352 IQIEDLKINPD--EVLAVNSLFRFKNLLDETVDVNCPRNSVLKLIRKIKPDI 401 (542)
Q Consensus 352 l~~~dL~i~~~--E~LaVN~~~~L~~L~des~~~~sprd~vL~~Ir~L~P~V 401 (542)
+. +..+ .+++.||.+ |+..+ +...+=...|-|+|.-
T Consensus 140 l~-----~~~~~fD~Vi~~~v~--~~~~d-------~~~~l~~~~r~LkpGG 177 (272)
T PRK11873 140 LP-----VADNSVDVIISNCVI--NLSPD-------KERVFKEAFRVLKPGG 177 (272)
T ss_pred CC-----CCCCceeEEEEcCcc--cCCCC-------HHHHHHHHHHHcCCCc
Confidence 33 2222 355556654 45443 2334445567799984
No 43
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=57.81 E-value=1.5e+02 Score=29.06 Aligned_cols=99 Identities=12% Similarity=0.092 Sum_probs=51.6
Q ss_pred EEEEeecccccchHHHHHHHhcCCCCCCeEEEeeecCCCCCCCChHHHHHHHHHHHHHHHhcCCcEEEEEeeCCCccccc
Q 046158 274 HIVDFGIRYGFQWPMLIQFLSMRTGGPPRLRITGIELPQPGFRPAERIEETGRRLLKYCQRFNVPFEYNCIASQNWETIQ 353 (542)
Q Consensus 274 HIIDfgI~~G~QWp~Liq~LA~R~gGPP~LRITgI~~p~~gf~p~~~leetG~rL~~~A~~~gVpFeF~~I~~~~~E~l~ 353 (542)
.|+|+|-+.|..-..| +... |..++|||+.. .+.++.+.+++. ++.+. . ....+
T Consensus 46 ~VLDiGCG~G~~~~~L----~~~~---~~~~v~giDiS------~~~l~~A~~~~~------~~~~~--~---~d~~~-- 99 (204)
T TIGR03587 46 SILELGANIGMNLAAL----KRLL---PFKHIYGVEIN------EYAVEKAKAYLP------NINII--Q---GSLFD-- 99 (204)
T ss_pred cEEEEecCCCHHHHHH----HHhC---CCCeEEEEECC------HHHHHHHHhhCC------CCcEE--E---eeccC--
Confidence 5999999999554444 3332 23589999963 344554433321 23221 1 11111
Q ss_pred ccccccCCCceEEEEecccccccccccccCCCchHHHHHHHHhhCCCEEEEEeec
Q 046158 354 IEDLKINPDEVLAVNSLFRFKNLLDETVDVNCPRNSVLKLIRKIKPDIFVNSIVN 408 (542)
Q Consensus 354 ~~dL~i~~~E~LaVN~~~~L~~L~des~~~~sprd~vL~~Ir~L~P~V~v~~e~~ 408 (542)
...++..=+|-|...|+|+..+ -...+++.+.+..-+.+++++..
T Consensus 100 ----~~~~~sfD~V~~~~vL~hl~p~------~~~~~l~el~r~~~~~v~i~e~~ 144 (204)
T TIGR03587 100 ----PFKDNFFDLVLTKGVLIHINPD------NLPTAYRELYRCSNRYILIAEYY 144 (204)
T ss_pred ----CCCCCCEEEEEECChhhhCCHH------HHHHHHHHHHhhcCcEEEEEEee
Confidence 1112222234455567787321 23566777766655667766653
No 44
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=57.13 E-value=2.6e+02 Score=29.50 Aligned_cols=139 Identities=12% Similarity=0.086 Sum_probs=67.6
Q ss_pred CCHHHHHHHHHHHhhhCCcchhhHHHH-------------hHHHHhhhccCCeeEEEEeecccccchHHHHHHHhcCCCC
Q 046158 233 KSAADMLKAYKVYLSACPFKKLAIMFT-------------IKMIMKVSEKASTLHIVDFGIRYGFQWPMLIQFLSMRTGG 299 (542)
Q Consensus 233 ~s~~~~l~Ay~~f~~~~Pf~kfa~~~A-------------NqaIleA~~g~~~VHIIDfgI~~G~QWp~Liq~LA~R~gG 299 (542)
.+..+.-.-|..+....||.+-.+-.- -+.|+..+..-+.-+|+|+|-+.|.. ...++.+ |
T Consensus 71 ~~~~~~~~l~~~l~~~~pwrkg~~~~~~~~~~~ew~s~~k~~~l~~~l~~l~g~~VLDIGCG~G~~----~~~la~~--g 144 (322)
T PRK15068 71 LSEGQRKRIENLLRALMPWRKGPFSLFGIHIDTEWRSDWKWDRVLPHLSPLKGRTVLDVGCGNGYH----MWRMLGA--G 144 (322)
T ss_pred CCHHHHHHHHHHHHhhcCcccCCccccCeeecceehHHhHHHHHHHhhCCCCCCEEEEeccCCcHH----HHHHHHc--C
Confidence 344444455666666777755543331 22334444322234799999999842 2345544 3
Q ss_pred CCeEEEeeecCCCCCCCChHHHHHHHHHHHHHHHhcCCcEEEEEeeCCCcccccccccccCCCceEEEEecccccccccc
Q 046158 300 PPRLRITGIELPQPGFRPAERIEETGRRLLKYCQRFNVPFEYNCIASQNWETIQIEDLKINPDEVLAVNSLFRFKNLLDE 379 (542)
Q Consensus 300 PP~LRITgI~~p~~gf~p~~~leetG~rL~~~A~~~gVpFeF~~I~~~~~E~l~~~dL~i~~~E~LaVN~~~~L~~L~de 379 (542)
|- +++|||.. ...+... +...+++.. ..+.+|... .++++.. ++-+=+|-|+..|||+.
T Consensus 145 ~~--~V~GiD~S------~~~l~q~-~a~~~~~~~-~~~i~~~~~---d~e~lp~------~~~FD~V~s~~vl~H~~-- 203 (322)
T PRK15068 145 AK--LVVGIDPS------QLFLCQF-EAVRKLLGN-DQRAHLLPL---GIEQLPA------LKAFDTVFSMGVLYHRR-- 203 (322)
T ss_pred CC--EEEEEcCC------HHHHHHH-HHHHHhcCC-CCCeEEEeC---CHHHCCC------cCCcCEEEECChhhccC--
Confidence 32 49999842 1222111 111222211 223444332 2344322 12122333445577763
Q ss_pred cccCCCchHHHHHHHHhhCCCEEE
Q 046158 380 TVDVNCPRNSVLKLIRKIKPDIFV 403 (542)
Q Consensus 380 s~~~~sprd~vL~~Ir~L~P~V~v 403 (542)
+|.+.+-+.-+.|+|.-.+
T Consensus 204 -----dp~~~L~~l~~~LkpGG~l 222 (322)
T PRK15068 204 -----SPLDHLKQLKDQLVPGGEL 222 (322)
T ss_pred -----CHHHHHHHHHHhcCCCcEE
Confidence 4666555666789998543
No 45
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=56.62 E-value=1.1e+02 Score=29.12 Aligned_cols=39 Identities=26% Similarity=0.395 Sum_probs=24.9
Q ss_pred HHHhhhccCCeeEEEEeecccccchHHHHHHHhcCCCCCCeEEEeeecC
Q 046158 262 MIMKVSEKASTLHIVDFGIRYGFQWPMLIQFLSMRTGGPPRLRITGIEL 310 (542)
Q Consensus 262 aIleA~~g~~~VHIIDfgI~~G~QWp~Liq~LA~R~gGPP~LRITgI~~ 310 (542)
.|.+.+... -+|+|+|-+.|. ++..|+.+.+ ..++||+.
T Consensus 6 ~i~~~i~~~--~~iLDiGcG~G~----~~~~l~~~~~----~~~~giD~ 44 (194)
T TIGR02081 6 SILNLIPPG--SRVLDLGCGDGE----LLALLRDEKQ----VRGYGIEI 44 (194)
T ss_pred HHHHhcCCC--CEEEEeCCCCCH----HHHHHHhccC----CcEEEEeC
Confidence 344444322 379999999994 5566765432 35699985
No 46
>COG1341 Predicted GTPase or GTP-binding protein [General function prediction only]
Probab=55.02 E-value=1.3e+02 Score=33.00 Aligned_cols=157 Identities=20% Similarity=0.201 Sum_probs=85.8
Q ss_pred hhHHHHhHHHHhhhccCCeeEEEEeecccc-cchHHHHHHHh--------cCCCCCCeEEEeeecCCCCCCCChHHHHHH
Q 046158 254 LAIMFTIKMIMKVSEKASTLHIVDFGIRYG-FQWPMLIQFLS--------MRTGGPPRLRITGIELPQPGFRPAERIEET 324 (542)
Q Consensus 254 fa~~~ANqaIleA~~g~~~VHIIDfgI~~G-~QWp~Liq~LA--------~R~gGPP~LRITgI~~p~~gf~p~~~leet 324 (542)
|+.+.+|... +.-.+|-|||.|+++- .-=|..|- |+ -+...|++...-|.-.|+. .|.. .-.-
T Consensus 89 Lt~~LaN~~l----~rG~~v~iiDaDvGQ~ei~pPg~IS-L~~~~s~~~~L~~l~~~~~~FvG~isP~~--~~~~-~i~~ 160 (398)
T COG1341 89 LTTYLANKLL----ARGRKVAIIDADVGQSEIGPPGFIS-LAFPESPVISLSELEPFTLYFVGSISPQG--FPGR-YIAG 160 (398)
T ss_pred HHHHHHHHHh----hcCceEEEEeCCCCCcccCCCceEE-eecccCCCCCHHHcCccceEEEeccCCCC--ChHH-HHHH
Confidence 4455677643 3345699999998852 12222221 11 1123566777776666664 2333 3344
Q ss_pred HHHHHHHHHhcCCcEEEEEeeCCCcccccccccccCCCceEEEEecccccccccccccCCCchHHHHHHHHhhCCCEEEE
Q 046158 325 GRRLLKYCQRFNVPFEYNCIASQNWETIQIEDLKINPDEVLAVNSLFRFKNLLDETVDVNCPRNSVLKLIRKIKPDIFVN 404 (542)
Q Consensus 325 G~rL~~~A~~~gVpFeF~~I~~~~~E~l~~~dL~i~~~E~LaVN~~~~L~~L~des~~~~sprd~vL~~Ir~L~P~V~v~ 404 (542)
-.||.++|++. -++++||+.=-.+ -....+--...|...+|+.++.
T Consensus 161 v~rL~~~a~~~--------------------------~~~ilIdT~GWi~--------G~~g~elk~~li~~ikP~~Ii~ 206 (398)
T COG1341 161 VARLVDLAKKE--------------------------ADFILIDTDGWIK--------GWGGLELKRALIDAIKPDLIIA 206 (398)
T ss_pred HHHHHHHhhcc--------------------------CCEEEEcCCCcee--------CchHHHHHHHHHhhcCCCEEEE
Confidence 46788888754 1245666532211 1134566678889999999987
Q ss_pred EeecCCCCCCchHHHHHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHHHH
Q 046158 405 SIVNGSYNAPFFVTRFREAIFHFSSLFDMFDTTMPREDPERLMFEREVYGREAMN 459 (542)
Q Consensus 405 ~e~~~~~nsp~F~~RF~EAL~~YsAlFDsLda~~pr~~~~R~~iE~~~~greI~N 459 (542)
.+.+.. ..++.+=.+...| ....|+..++.-.+|...=.+-+++.+.+
T Consensus 207 l~~~~~---~~~l~~~~~~~~~----~~~~~~~~~~sR~ER~~~R~e~~~ryf~~ 254 (398)
T COG1341 207 LERANE---LSPLLEGVESIVY----LKVPDAVAPRSREERKELREEKYRRYFEG 254 (398)
T ss_pred eccccc---cchhhhcccCceE----EeccccccccChhHHHHHHHHHHHHhccC
Confidence 655432 2223333333333 33445566676666655444456777665
No 47
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=52.45 E-value=1.4e+02 Score=32.63 Aligned_cols=109 Identities=12% Similarity=0.092 Sum_probs=58.1
Q ss_pred EEEEeecccccchHHHHHHHhcCCCCCCeEEEeeecCCCCCCCChHHHHHHHHHHHHHHHhcCCcEEEEEeeCCCccccc
Q 046158 274 HIVDFGIRYGFQWPMLIQFLSMRTGGPPRLRITGIELPQPGFRPAERIEETGRRLLKYCQRFNVPFEYNCIASQNWETIQ 353 (542)
Q Consensus 274 HIIDfgI~~G~QWp~Liq~LA~R~gGPP~LRITgI~~p~~gf~p~~~leetG~rL~~~A~~~gVpFeF~~I~~~~~E~l~ 353 (542)
+|+|+|-|.|. +--.|+.+. |..+||+||.. ...++-+.+.+....-.-.-.++|. ...-++.+.
T Consensus 231 ~VLDLGCGtGv----i~i~la~~~---P~~~V~~vD~S------~~Av~~A~~N~~~n~~~~~~~v~~~--~~D~l~~~~ 295 (378)
T PRK15001 231 EIVDLGCGNGV----IGLTLLDKN---PQAKVVFVDES------PMAVASSRLNVETNMPEALDRCEFM--INNALSGVE 295 (378)
T ss_pred eEEEEeccccH----HHHHHHHhC---CCCEEEEEECC------HHHHHHHHHHHHHcCcccCceEEEE--EccccccCC
Confidence 79999999996 334555553 66899999964 4556666655543321100123433 211122221
Q ss_pred ccccccCCCceEEEEecccccccccccccCCCchHHHHH-HHHhhCCCEEEEEee
Q 046158 354 IEDLKINPDEVLAVNSLFRFKNLLDETVDVNCPRNSVLK-LIRKIKPDIFVNSIV 407 (542)
Q Consensus 354 ~~dL~i~~~E~LaVN~~~~L~~L~des~~~~sprd~vL~-~Ir~L~P~V~v~~e~ 407 (542)
. ..=++|+.|-.|+-.+-..+ .-...++. .-+-|+|.-.+..+.
T Consensus 296 ~-----~~fDlIlsNPPfh~~~~~~~-----~ia~~l~~~a~~~LkpGG~L~iV~ 340 (378)
T PRK15001 296 P-----FRFNAVLCNPPFHQQHALTD-----NVAWEMFHHARRCLKINGELYIVA 340 (378)
T ss_pred C-----CCEEEEEECcCcccCccCCH-----HHHHHHHHHHHHhcccCCEEEEEE
Confidence 1 12257788888865442221 11223444 445789986555444
No 48
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=52.41 E-value=2.7e+02 Score=29.31 Aligned_cols=116 Identities=16% Similarity=0.325 Sum_probs=67.1
Q ss_pred HhHHHHhhhccCCeeEEEEeecccccchHHHHHHHhcCCCCCCeEEEeeecCCCCCCCChHHHHHHHHHHHHHHHhcCCc
Q 046158 259 TIKMIMKVSEKASTLHIVDFGIRYGFQWPMLIQFLSMRTGGPPRLRITGIELPQPGFRPAERIEETGRRLLKYCQRFNVP 338 (542)
Q Consensus 259 ANqaIleA~~g~~~VHIIDfgI~~G~QWp~Liq~LA~R~gGPP~LRITgI~~p~~gf~p~~~leetG~rL~~~A~~~gVp 338 (542)
.-..|++-+.=+.--||.|+|- .|-.|+...|.+.| +++|||++. .+..+...+|+ +..|++
T Consensus 60 k~~~~~~kl~L~~G~~lLDiGC----GWG~l~~~aA~~y~----v~V~GvTlS------~~Q~~~~~~r~----~~~gl~ 121 (283)
T COG2230 60 KLDLILEKLGLKPGMTLLDIGC----GWGGLAIYAAEEYG----VTVVGVTLS------EEQLAYAEKRI----AARGLE 121 (283)
T ss_pred HHHHHHHhcCCCCCCEEEEeCC----ChhHHHHHHHHHcC----CEEEEeeCC------HHHHHHHHHHH----HHcCCC
Confidence 3344445444466778999875 47799999998874 899999874 34444444443 344554
Q ss_pred EEEEEeeCCCcccccccccccCCCceEEEEecccccccccccccCCCchHHHHHHHHh-hCCC--EEEEEee
Q 046158 339 FEYNCIASQNWETIQIEDLKINPDEVLAVNSLFRFKNLLDETVDVNCPRNSVLKLIRK-IKPD--IFVNSIV 407 (542)
Q Consensus 339 FeF~~I~~~~~E~l~~~dL~i~~~E~LaVN~~~~L~~L~des~~~~sprd~vL~~Ir~-L~P~--V~v~~e~ 407 (542)
=.-+.+. ..|.++... +=.|-++=.+.|+..+. -+.+++.+++ |+|+ ++.|++.
T Consensus 122 ~~v~v~l-~d~rd~~e~--------fDrIvSvgmfEhvg~~~------~~~ff~~~~~~L~~~G~~llh~I~ 178 (283)
T COG2230 122 DNVEVRL-QDYRDFEEP--------FDRIVSVGMFEHVGKEN------YDDFFKKVYALLKPGGRMLLHSIT 178 (283)
T ss_pred cccEEEe-ccccccccc--------cceeeehhhHHHhCccc------HHHHHHHHHhhcCCCceEEEEEec
Confidence 2222333 445554432 11233334566776532 4678888865 6776 3344444
No 49
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=52.39 E-value=1.8e+02 Score=30.91 Aligned_cols=140 Identities=12% Similarity=0.142 Sum_probs=82.1
Q ss_pred eEEEEeecccccchHHHHHHHhcCCCCCCeEEEeeecCCCCCCCChHHHHHHHHHHHHHHHhcCCc-EEEEEeeCCCccc
Q 046158 273 LHIVDFGIRYGFQWPMLIQFLSMRTGGPPRLRITGIELPQPGFRPAERIEETGRRLLKYCQRFNVP-FEYNCIASQNWET 351 (542)
Q Consensus 273 VHIIDfgI~~G~QWp~Liq~LA~R~gGPP~LRITgI~~p~~gf~p~~~leetG~rL~~~A~~~gVp-FeF~~I~~~~~E~ 351 (542)
..|||||-|.|..=..||++|.. .+. ..+-.+||.. .+.|+++.++|. .+ ..| .++++|. ...++
T Consensus 78 ~~lIELGsG~~~Kt~~LL~aL~~-~~~--~~~Y~plDIS------~~~L~~a~~~L~--~~--~~p~l~v~~l~-gdy~~ 143 (319)
T TIGR03439 78 SMLVELGSGNLRKVGILLEALER-QKK--SVDYYALDVS------RSELQRTLAELP--LG--NFSHVRCAGLL-GTYDD 143 (319)
T ss_pred CEEEEECCCchHHHHHHHHHHHh-cCC--CceEEEEECC------HHHHHHHHHhhh--hc--cCCCeEEEEEE-ecHHH
Confidence 47999999999999999999973 222 3678999974 567999988887 12 235 7777876 32222
Q ss_pred c-c-ccccccCCCceEEEEecccccccccccccCCCchHHHHHHHHh--hCCC-EEEEEee--------cCCCCCCc-hH
Q 046158 352 I-Q-IEDLKINPDEVLAVNSLFRFKNLLDETVDVNCPRNSVLKLIRK--IKPD-IFVNSIV--------NGSYNAPF-FV 417 (542)
Q Consensus 352 l-~-~~dL~i~~~E~LaVN~~~~L~~L~des~~~~sprd~vL~~Ir~--L~P~-V~v~~e~--------~~~~nsp~-F~ 417 (542)
. . ...-.+...-.++.-.-..+.|+..+ -...+|+.|++ |+|. .|+++.- .+.||.+. .-
T Consensus 144 ~l~~l~~~~~~~~~r~~~flGSsiGNf~~~------ea~~fL~~~~~~~l~~~d~lLiG~D~~k~~~~l~~AY~d~~gvT 217 (319)
T TIGR03439 144 GLAWLKRPENRSRPTTILWLGSSIGNFSRP------EAAAFLAGFLATALSPSDSFLIGLDGCKDPDKVLRAYNDPGGVT 217 (319)
T ss_pred HHhhcccccccCCccEEEEeCccccCCCHH------HHHHHHHHHHHhhCCCCCEEEEecCCCCCHHHHHHHhcCCcchh
Confidence 1 1 00001111123333333355554321 12468999987 8885 4555421 23466542 22
Q ss_pred HHH-HHHHHHHHHHHH
Q 046158 418 TRF-REAIFHFSSLFD 432 (542)
Q Consensus 418 ~RF-~EAL~~YsAlFD 432 (542)
.+| .+.|.+--..++
T Consensus 218 a~FnlN~L~~~Nr~Lg 233 (319)
T TIGR03439 218 RRFVLNGLVHANEILG 233 (319)
T ss_pred HHHHHHHHHHHHHHhC
Confidence 334 566777666655
No 50
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=51.58 E-value=61 Score=33.13 Aligned_cols=56 Identities=18% Similarity=0.251 Sum_probs=37.1
Q ss_pred hhCCcchhhH-HHHhHHHHhh----hccCCeeEEEEeecccccchHHHHHHHhcCCCCCCeEEEeeecCC
Q 046158 247 SACPFKKLAI-MFTIKMIMKV----SEKASTLHIVDFGIRYGFQWPMLIQFLSMRTGGPPRLRITGIELP 311 (542)
Q Consensus 247 ~~~Pf~kfa~-~~ANqaIleA----~~g~~~VHIIDfgI~~G~QWp~Liq~LA~R~gGPP~LRITgI~~p 311 (542)
...|=.+++. |..|+.|++. +.-.+.-+|+|+|-|.| .+...|+.+ ++ ++|||+..
T Consensus 13 ~~~~~k~~gq~fl~~~~i~~~i~~~l~~~~~~~VLEiG~G~G----~lt~~L~~~--~~---~v~avE~d 73 (272)
T PRK00274 13 GHRAKKSLGQNFLIDENILDKIVDAAGPQPGDNVLEIGPGLG----ALTEPLLER--AA---KVTAVEID 73 (272)
T ss_pred CCCCCcccCcCcCCCHHHHHHHHHhcCCCCcCeEEEeCCCcc----HHHHHHHHh--CC---cEEEEECC
Confidence 3466666666 5566655543 33345568999999988 456666766 22 89999963
No 51
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=50.09 E-value=1.3e+02 Score=31.09 Aligned_cols=110 Identities=18% Similarity=0.235 Sum_probs=58.7
Q ss_pred hHHHHhhhccCCeeEEEEeecccccchHHHHHHHhcCCCCCCeEEEeeecCCCCCCCChHHHHHHHHHHHHHHHhcCCcE
Q 046158 260 IKMIMKVSEKASTLHIVDFGIRYGFQWPMLIQFLSMRTGGPPRLRITGIELPQPGFRPAERIEETGRRLLKYCQRFNVPF 339 (542)
Q Consensus 260 NqaIleA~~g~~~VHIIDfgI~~G~QWp~Liq~LA~R~gGPP~LRITgI~~p~~gf~p~~~leetG~rL~~~A~~~gVpF 339 (542)
...|++.+.=+.-=||+|+|.| |-.+...+|++.| .++|||.+. .+..+. ..+.++..|++=
T Consensus 51 ~~~~~~~~~l~~G~~vLDiGcG----wG~~~~~~a~~~g----~~v~gitlS------~~Q~~~----a~~~~~~~gl~~ 112 (273)
T PF02353_consen 51 LDLLCEKLGLKPGDRVLDIGCG----WGGLAIYAAERYG----CHVTGITLS------EEQAEY----ARERIREAGLED 112 (273)
T ss_dssp HHHHHTTTT--TT-EEEEES-T----TSHHHHHHHHHH------EEEEEES-------HHHHHH----HHHHHHCSTSSS
T ss_pred HHHHHHHhCCCCCCEEEEeCCC----ccHHHHHHHHHcC----cEEEEEECC------HHHHHH----HHHHHHhcCCCC
Confidence 3456666544455589999765 6688888998864 689999863 333333 334455667763
Q ss_pred EEEEeeCCCcccccccccccCCCceEEEEecccccccccccccCCCchHHHHHHH-HhhCCCEE
Q 046158 340 EYNCIASQNWETIQIEDLKINPDEVLAVNSLFRFKNLLDETVDVNCPRNSVLKLI-RKIKPDIF 402 (542)
Q Consensus 340 eF~~I~~~~~E~l~~~dL~i~~~E~LaVN~~~~L~~L~des~~~~sprd~vL~~I-r~L~P~V~ 402 (542)
.-..+. ..+.++.. .=| . |-++-.+.|+..+ ....+++.| +-|+|.-.
T Consensus 113 ~v~v~~-~D~~~~~~-----~fD-~--IvSi~~~Ehvg~~------~~~~~f~~~~~~LkpgG~ 161 (273)
T PF02353_consen 113 RVEVRL-QDYRDLPG-----KFD-R--IVSIEMFEHVGRK------NYPAFFRKISRLLKPGGR 161 (273)
T ss_dssp TEEEEE-S-GGG--------S-S-E--EEEESEGGGTCGG------GHHHHHHHHHHHSETTEE
T ss_pred ceEEEE-eeccccCC-----CCC-E--EEEEechhhcChh------HHHHHHHHHHHhcCCCcE
Confidence 222233 33433332 112 2 2233346676432 246788888 56899843
No 52
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=49.07 E-value=2.2e+02 Score=28.07 Aligned_cols=109 Identities=13% Similarity=0.197 Sum_probs=63.7
Q ss_pred HHHHhhhccCCeeEEEEeecccccchHHHHHHHhcCCCCCCeEEEeeecCCCCCCCChHHHHHHHHHHHHHHHhcCCcEE
Q 046158 261 KMIMKVSEKASTLHIVDFGIRYGFQWPMLIQFLSMRTGGPPRLRITGIELPQPGFRPAERIEETGRRLLKYCQRFNVPFE 340 (542)
Q Consensus 261 qaIleA~~g~~~VHIIDfgI~~G~QWp~Liq~LA~R~gGPP~LRITgI~~p~~gf~p~~~leetG~rL~~~A~~~gVpFe 340 (542)
..|++|+.--+.-.++|+|-|.|.- ---||++- ..+|++|.. .. .-..|.+.|+.-+++.+
T Consensus 20 s~v~~a~~~~~~g~~LDlgcG~GRN----alyLA~~G-----~~VtAvD~s------~~----al~~l~~~a~~~~l~i~ 80 (192)
T PF03848_consen 20 SEVLEAVPLLKPGKALDLGCGEGRN----ALYLASQG-----FDVTAVDIS------PV----ALEKLQRLAEEEGLDIR 80 (192)
T ss_dssp HHHHHHCTTS-SSEEEEES-TTSHH----HHHHHHTT------EEEEEESS------HH----HHHHHHHHHHHTT-TEE
T ss_pred HHHHHHHhhcCCCcEEEcCCCCcHH----HHHHHHCC-----CeEEEEECC------HH----HHHHHHHHHhhcCceeE
Confidence 3466776655667899999998841 11366552 789999964 22 23457788999999966
Q ss_pred EEEeeCCCcccccccccccCCCceEEEEecccccccccccccCCCchHHHHHHHHh-hCCCEEE
Q 046158 341 YNCIASQNWETIQIEDLKINPDEVLAVNSLFRFKNLLDETVDVNCPRNSVLKLIRK-IKPDIFV 403 (542)
Q Consensus 341 F~~I~~~~~E~l~~~dL~i~~~E~LaVN~~~~L~~L~des~~~~sprd~vL~~Ir~-L~P~V~v 403 (542)
....- +++. .+. ++.=+|.+...|++|..+ -++.+++.|++ ++|.-+.
T Consensus 81 ~~~~D---l~~~-----~~~-~~yD~I~st~v~~fL~~~------~~~~i~~~m~~~~~pGG~~ 129 (192)
T PF03848_consen 81 TRVAD---LNDF-----DFP-EEYDFIVSTVVFMFLQRE------LRPQIIENMKAATKPGGYN 129 (192)
T ss_dssp EEE-B---GCCB-----S-T-TTEEEEEEESSGGGS-GG------GHHHHHHHHHHTEEEEEEE
T ss_pred EEEec---chhc-----ccc-CCcCEEEEEEEeccCCHH------HHHHHHHHHHhhcCCcEEE
Confidence 55432 3322 232 344456666777787643 35677777754 7897443
No 53
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=48.81 E-value=1.8e+02 Score=31.54 Aligned_cols=54 Identities=19% Similarity=0.405 Sum_probs=32.6
Q ss_pred HHHHhhhccCCeeEEEEeecccccchHHHHHHHhcCCCCCCeEEEeeecCCCCCCCChHHHHHHHHHH
Q 046158 261 KMIMKVSEKASTLHIVDFGIRYGFQWPMLIQFLSMRTGGPPRLRITGIELPQPGFRPAERIEETGRRL 328 (542)
Q Consensus 261 qaIleA~~g~~~VHIIDfgI~~G~QWp~Liq~LA~R~gGPP~LRITgI~~p~~gf~p~~~leetG~rL 328 (542)
..|++.+.-...=+|+|+|.+.|. +...++++.| .++|||+.. .+.++.+.++.
T Consensus 157 ~~l~~~l~l~~g~rVLDIGcG~G~----~a~~la~~~g----~~V~giDlS------~~~l~~A~~~~ 210 (383)
T PRK11705 157 DLICRKLQLKPGMRVLDIGCGWGG----LARYAAEHYG----VSVVGVTIS------AEQQKLAQERC 210 (383)
T ss_pred HHHHHHhCCCCCCEEEEeCCCccH----HHHHHHHHCC----CEEEEEeCC------HHHHHHHHHHh
Confidence 344454433344589999987763 5555666543 489999863 34455554443
No 54
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=47.32 E-value=2.5e+02 Score=29.95 Aligned_cols=106 Identities=16% Similarity=0.268 Sum_probs=58.0
Q ss_pred EEEEeecccccchHHHHHHHhcCCCCCCeEEEeeecCCCCCCCChHHHHHHHHHHHHHHHhcCCcEEEEEeeCCCccccc
Q 046158 274 HIVDFGIRYGFQWPMLIQFLSMRTGGPPRLRITGIELPQPGFRPAERIEETGRRLLKYCQRFNVPFEYNCIASQNWETIQ 353 (542)
Q Consensus 274 HIIDfgI~~G~QWp~Liq~LA~R~gGPP~LRITgI~~p~~gf~p~~~leetG~rL~~~A~~~gVpFeF~~I~~~~~E~l~ 353 (542)
+|+|+|-|.|. +-..|+.+. |..++|+||.. ...++.+.+++.. .++..++.... -.+
T Consensus 199 ~VLDlGCG~G~----ls~~la~~~---p~~~v~~vDis------~~Al~~A~~nl~~----n~l~~~~~~~D--~~~--- 256 (342)
T PRK09489 199 KVLDVGCGAGV----LSAVLARHS---PKIRLTLSDVS------AAALESSRATLAA----NGLEGEVFASN--VFS--- 256 (342)
T ss_pred eEEEeccCcCH----HHHHHHHhC---CCCEEEEEECC------HHHHHHHHHHHHH----cCCCCEEEEcc--ccc---
Confidence 69999999996 444555553 45789999963 4556666655543 45555543211 111
Q ss_pred ccccccCCCceEEEEecccccccccccccCCCchHHHHHHHHhhCCCEEEEEeec
Q 046158 354 IEDLKINPDEVLAVNSLFRFKNLLDETVDVNCPRNSVLKLIRKIKPDIFVNSIVN 408 (542)
Q Consensus 354 ~~dL~i~~~E~LaVN~~~~L~~L~des~~~~sprd~vL~~Ir~L~P~V~v~~e~~ 408 (542)
.+ -.+=+.++.|-.|+ .-.+.. .+...+.+-...+.|+|.-....+.|
T Consensus 257 --~~-~~~fDlIvsNPPFH--~g~~~~--~~~~~~~i~~a~~~LkpgG~L~iVan 304 (342)
T PRK09489 257 --DI-KGRFDMIISNPPFH--DGIQTS--LDAAQTLIRGAVRHLNSGGELRIVAN 304 (342)
T ss_pred --cc-CCCccEEEECCCcc--CCcccc--HHHHHHHHHHHHHhcCcCCEEEEEEe
Confidence 11 12235778787653 322211 01123333344566999865554444
No 55
>PRK06922 hypothetical protein; Provisional
Probab=46.95 E-value=1.3e+02 Score=35.33 Aligned_cols=111 Identities=15% Similarity=0.173 Sum_probs=57.1
Q ss_pred eeEEEEeecccccchHHHHHHHhcCCCCCCeEEEeeecCCCCCCCChHHHHHHHHHHHHHHHhcCCcEEEEEeeCCCccc
Q 046158 272 TLHIVDFGIRYGFQWPMLIQFLSMRTGGPPRLRITGIELPQPGFRPAERIEETGRRLLKYCQRFNVPFEYNCIASQNWET 351 (542)
Q Consensus 272 ~VHIIDfgI~~G~QWp~Liq~LA~R~gGPP~LRITgI~~p~~gf~p~~~leetG~rL~~~A~~~gVpFeF~~I~~~~~E~ 351 (542)
.-.|+|+|.|.|. +...|+.+. |..++||||.+ ...++.+..++. ..|.++++ +. ....+
T Consensus 419 g~rVLDIGCGTG~----ls~~LA~~~---P~~kVtGIDIS------~~MLe~Ararl~----~~g~~ie~--I~-gDa~d 478 (677)
T PRK06922 419 GDTIVDVGAGGGV----MLDMIEEET---EDKRIYGIDIS------ENVIDTLKKKKQ----NEGRSWNV--IK-GDAIN 478 (677)
T ss_pred CCEEEEeCCCCCH----HHHHHHHhC---CCCEEEEEECC------HHHHHHHHHHhh----hcCCCeEE--EE-cchHh
Confidence 3579999999983 445566553 56899999974 344555544432 23454443 22 12212
Q ss_pred ccccccccCCCceEEEEecccccccccc----cc--cCCCchHHHHHH-HHhhCCCE-EEEEe
Q 046158 352 IQIEDLKINPDEVLAVNSLFRFKNLLDE----TV--DVNCPRNSVLKL-IRKIKPDI-FVNSI 406 (542)
Q Consensus 352 l~~~dL~i~~~E~LaVN~~~~L~~L~de----s~--~~~sprd~vL~~-Ir~L~P~V-~v~~e 406 (542)
+. + .+.++.+=+|-+.+-+|++.+- .. ....+ ..+|+. .+.|+|.- |++.+
T Consensus 479 Lp--~-~fedeSFDvVVsn~vLH~L~syIp~~g~~f~~edl-~kiLreI~RVLKPGGrLII~D 537 (677)
T PRK06922 479 LS--S-SFEKESVDTIVYSSILHELFSYIEYEGKKFNHEVI-KKGLQSAYEVLKPGGRIIIRD 537 (677)
T ss_pred Cc--c-ccCCCCEEEEEEchHHHhhhhhcccccccccHHHH-HHHHHHHHHHcCCCcEEEEEe
Confidence 11 0 1233434344455566776421 00 00112 344544 47899974 44433
No 56
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=44.69 E-value=56 Score=29.90 Aligned_cols=41 Identities=29% Similarity=0.504 Sum_probs=27.4
Q ss_pred hccCCeeEEEEeecccccchHHHHHHHhcCCC-CCCeEEEeeecCC
Q 046158 267 SEKASTLHIVDFGIRYGFQWPMLIQFLSMRTG-GPPRLRITGIELP 311 (542)
Q Consensus 267 ~~g~~~VHIIDfgI~~G~QWp~Liq~LA~R~g-GPP~LRITgI~~p 311 (542)
....+..+|||+|-|.|. |=+.||..-. -.|.++|+|||..
T Consensus 21 ~~~~~~~~vvD~GsG~Gy----Ls~~La~~l~~~~~~~~v~~iD~~ 62 (141)
T PF13679_consen 21 GESKRCITVVDLGSGKGY----LSRALAHLLCNSSPNLRVLGIDCN 62 (141)
T ss_pred hccCCCCEEEEeCCChhH----HHHHHHHHHHhcCCCCeEEEEECC
Confidence 345789999999999885 3333333100 0278999999964
No 57
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=43.12 E-value=2.5e+02 Score=29.78 Aligned_cols=41 Identities=17% Similarity=0.259 Sum_probs=25.5
Q ss_pred HHHhhhccCCeeEEEEeecccccchHHHHHHHhcCCCCCCeEEEeeecC
Q 046158 262 MIMKVSEKASTLHIVDFGIRYGFQWPMLIQFLSMRTGGPPRLRITGIEL 310 (542)
Q Consensus 262 aIleA~~g~~~VHIIDfgI~~G~QWp~Liq~LA~R~gGPP~LRITgI~~ 310 (542)
+|+..+..-+.=+|+|+|-+.|. ++..++.+ |+- ++||||.
T Consensus 112 ~~l~~l~~~~g~~VLDvGCG~G~----~~~~~~~~--g~~--~v~GiDp 152 (314)
T TIGR00452 112 RVLPHLSPLKGRTILDVGCGSGY----HMWRMLGH--GAK--SLVGIDP 152 (314)
T ss_pred HHHHhcCCCCCCEEEEeccCCcH----HHHHHHHc--CCC--EEEEEcC
Confidence 35554433333489999999986 33444433 432 6899985
No 58
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=40.32 E-value=3.7e+02 Score=26.43 Aligned_cols=106 Identities=12% Similarity=0.092 Sum_probs=57.1
Q ss_pred eEEEEeecccccchHHHHHHHhcCCCCCCeEEEeeecCCCCCCCChHHHHHHHHHHHHHHHhcCCcEEEEEeeCCCcccc
Q 046158 273 LHIVDFGIRYGFQWPMLIQFLSMRTGGPPRLRITGIELPQPGFRPAERIEETGRRLLKYCQRFNVPFEYNCIASQNWETI 352 (542)
Q Consensus 273 VHIIDfgI~~G~QWp~Liq~LA~R~gGPP~LRITgI~~p~~gf~p~~~leetG~rL~~~A~~~gVpFeF~~I~~~~~E~l 352 (542)
-.|+|+|-+.| ..-|.+|+.. . -++|+|+.. .+.++.+.+. ++..|+. ....+. ..+...
T Consensus 55 ~~vLDl~~GsG---~l~l~~lsr~---a--~~V~~vE~~------~~a~~~a~~N----l~~~~~~-~v~~~~-~D~~~~ 114 (199)
T PRK10909 55 ARCLDCFAGSG---ALGLEALSRY---A--AGATLLEMD------RAVAQQLIKN----LATLKAG-NARVVN-TNALSF 114 (199)
T ss_pred CEEEEcCCCcc---HHHHHHHHcC---C--CEEEEEECC------HHHHHHHHHH----HHHhCCC-cEEEEE-chHHHH
Confidence 36899999988 3334456532 1 389999863 2334433333 3334442 122222 222211
Q ss_pred cccccccCCCceEEEEecccccccccccccCCCchHHHHHHHHh---hCCCEEEEEeecCCC
Q 046158 353 QIEDLKINPDEVLAVNSLFRFKNLLDETVDVNCPRNSVLKLIRK---IKPDIFVNSIVNGSY 411 (542)
Q Consensus 353 ~~~dL~i~~~E~LaVN~~~~L~~L~des~~~~sprd~vL~~Ir~---L~P~V~v~~e~~~~~ 411 (542)
-. .. -.+=++|++|=.|+- .-...++..|.. +.|+-+|.++.+...
T Consensus 115 l~-~~-~~~fDlV~~DPPy~~-----------g~~~~~l~~l~~~~~l~~~~iv~ve~~~~~ 163 (199)
T PRK10909 115 LA-QP-GTPHNVVFVDPPFRK-----------GLLEETINLLEDNGWLADEALIYVESEVEN 163 (199)
T ss_pred Hh-hc-CCCceEEEECCCCCC-----------ChHHHHHHHHHHCCCcCCCcEEEEEecCCC
Confidence 00 01 112357788877641 123567888877 689988888776543
No 59
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=40.22 E-value=1.6e+02 Score=28.31 Aligned_cols=43 Identities=14% Similarity=0.232 Sum_probs=28.0
Q ss_pred eEEEEeecccccchHHHHHHHhcCCCCCCeEEEeeecCCCCCCCChHHHHHHHHHH
Q 046158 273 LHIVDFGIRYGFQWPMLIQFLSMRTGGPPRLRITGIELPQPGFRPAERIEETGRRL 328 (542)
Q Consensus 273 VHIIDfgI~~G~QWp~Liq~LA~R~gGPP~LRITgI~~p~~gf~p~~~leetG~rL 328 (542)
--|+|+|.+.|. ++-.||.+. |...++||+.. ...++.+.+++
T Consensus 18 ~~ilDiGcG~G~----~~~~la~~~---p~~~v~gvD~~------~~~l~~a~~~~ 60 (194)
T TIGR00091 18 PLHLEIGCGKGR----FLIDMAKQN---PDKNFLGIEIH------TPIVLAANNKA 60 (194)
T ss_pred ceEEEeCCCccH----HHHHHHHhC---CCCCEEEEEee------HHHHHHHHHHH
Confidence 469999999884 444556553 55789999963 34455544444
No 60
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=39.52 E-value=1.1e+02 Score=26.08 Aligned_cols=31 Identities=23% Similarity=0.139 Sum_probs=21.5
Q ss_pred EEEEeecccccchHHHHHHHhcCCCCCCeEEEeeecCC
Q 046158 274 HIVDFGIRYGFQWPMLIQFLSMRTGGPPRLRITGIELP 311 (542)
Q Consensus 274 HIIDfgI~~G~QWp~Liq~LA~R~gGPP~LRITgI~~p 311 (542)
+|+|+|.+.|.. ...|+++. |..++|+||..
T Consensus 22 ~vldlG~G~G~~----~~~l~~~~---~~~~v~~vD~s 52 (124)
T TIGR02469 22 VLWDIGAGSGSI----TIEAARLV---PNGRVYAIERN 52 (124)
T ss_pred EEEEeCCCCCHH----HHHHHHHC---CCceEEEEcCC
Confidence 899999998743 33344442 33789999963
No 61
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=39.22 E-value=76 Score=32.51 Aligned_cols=111 Identities=22% Similarity=0.354 Sum_probs=67.4
Q ss_pred hccCCeeEEEEeecccccchHHHHHHHhcCCCCCCeEEEeeecCCCCCCCChHHHHHHHHHHHHHHHhcCCcEEEEEeeC
Q 046158 267 SEKASTLHIVDFGIRYGFQWPMLIQFLSMRTGGPPRLRITGIELPQPGFRPAERIEETGRRLLKYCQRFNVPFEYNCIAS 346 (542)
Q Consensus 267 ~~g~~~VHIIDfgI~~G~QWp~Liq~LA~R~gGPP~LRITgI~~p~~gf~p~~~leetG~rL~~~A~~~gVpFeF~~I~~ 346 (542)
+.-+.---|+|+|.|-|-+= +-|++|- |-=.|||||.. .+.|+++.+||- ++.|+
T Consensus 26 Vp~~~~~~v~DLGCGpGnsT----elL~~Rw---P~A~i~GiDsS------~~Mla~Aa~rlp------~~~f~------ 80 (257)
T COG4106 26 VPLERPRRVVDLGCGPGNST----ELLARRW---PDAVITGIDSS------PAMLAKAAQRLP------DATFE------ 80 (257)
T ss_pred CCccccceeeecCCCCCHHH----HHHHHhC---CCCeEeeccCC------HHHHHHHHHhCC------CCcee------
Confidence 33455667999999998654 4455565 55689999853 466666655553 23333
Q ss_pred CCcccccccccccC-CCceEEEEecccccccccccccCCCchHHHHHHHHhhCCCEEEEEeecCCCCCCc
Q 046158 347 QNWETIQIEDLKIN-PDEVLAVNSLFRFKNLLDETVDVNCPRNSVLKLIRKIKPDIFVNSIVNGSYNAPF 415 (542)
Q Consensus 347 ~~~E~l~~~dL~i~-~~E~LaVN~~~~L~~L~des~~~~sprd~vL~~Ir~L~P~V~v~~e~~~~~nsp~ 415 (542)
.-++.+++-. +-.+|.-|..| |-|+|. -+.+=+++-.|.|.-++-+-+-.++..|+
T Consensus 81 ----~aDl~~w~p~~~~dllfaNAvl--qWlpdH-------~~ll~rL~~~L~Pgg~LAVQmPdN~deps 137 (257)
T COG4106 81 ----EADLRTWKPEQPTDLLFANAVL--QWLPDH-------PELLPRLVSQLAPGGVLAVQMPDNLDEPS 137 (257)
T ss_pred ----cccHhhcCCCCccchhhhhhhh--hhcccc-------HHHHHHHHHhhCCCceEEEECCCccCchh
Confidence 1122222221 22356667665 456653 25667888999999887665556666553
No 62
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=38.71 E-value=3.8e+02 Score=26.04 Aligned_cols=97 Identities=15% Similarity=0.231 Sum_probs=51.7
Q ss_pred eeEEEEeecccccchHHHHHHHhcCCCCCCeEEEeeecCCCCCCCChHHHHHHHHHHHHHHHhcCCc-EEEEEeeCCCcc
Q 046158 272 TLHIVDFGIRYGFQWPMLIQFLSMRTGGPPRLRITGIELPQPGFRPAERIEETGRRLLKYCQRFNVP-FEYNCIASQNWE 350 (542)
Q Consensus 272 ~VHIIDfgI~~G~QWp~Liq~LA~R~gGPP~LRITgI~~p~~gf~p~~~leetG~rL~~~A~~~gVp-FeF~~I~~~~~E 350 (542)
.-.|+|+|-+.|. .++ .++.+. |..++|+||.. .+.++.+.+ .++..|++ ++|.. ...+
T Consensus 46 g~~VLDiGcGtG~--~al--~la~~~---~~~~V~giD~s------~~~l~~A~~----~~~~~~l~~i~~~~---~d~~ 105 (187)
T PRK00107 46 GERVLDVGSGAGF--PGI--PLAIAR---PELKVTLVDSL------GKKIAFLRE----VAAELGLKNVTVVH---GRAE 105 (187)
T ss_pred CCeEEEEcCCCCH--HHH--HHHHHC---CCCeEEEEeCc------HHHHHHHHH----HHHHcCCCCEEEEe---ccHh
Confidence 3479999999983 222 223222 34689999863 233444433 34455664 45433 2333
Q ss_pred cccccccccCCCceEEEEecccccccccccccCCCchHHHHHH-HHhhCCCEEEEEe
Q 046158 351 TIQIEDLKINPDEVLAVNSLFRFKNLLDETVDVNCPRNSVLKL-IRKIKPDIFVNSI 406 (542)
Q Consensus 351 ~l~~~dL~i~~~E~LaVN~~~~L~~L~des~~~~sprd~vL~~-Ir~L~P~V~v~~e 406 (542)
++.. -.+=++++.|+. .+.+.+++. .+.|+|.-.++..
T Consensus 106 ~~~~----~~~fDlV~~~~~--------------~~~~~~l~~~~~~LkpGG~lv~~ 144 (187)
T PRK00107 106 EFGQ----EEKFDVVTSRAV--------------ASLSDLVELCLPLLKPGGRFLAL 144 (187)
T ss_pred hCCC----CCCccEEEEccc--------------cCHHHHHHHHHHhcCCCeEEEEE
Confidence 3322 122346666541 123456655 4789998665544
No 63
>PF11020 DUF2610: Domain of unknown function (DUF2610); InterPro: IPR021277 This family is conserved in Proteobacteria. One member is annotated as being elongation factor P but this could not be confirmed.
Probab=38.03 E-value=36 Score=29.24 Aligned_cols=22 Identities=32% Similarity=0.522 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHhcCCcEE
Q 046158 319 ERIEETGRRLLKYCQRFNVPFE 340 (542)
Q Consensus 319 ~~leetG~rL~~~A~~~gVpFe 340 (542)
+.+.+.-..|.+.|+.-||||+
T Consensus 48 ~~V~~sl~kL~~La~~N~v~fe 69 (82)
T PF11020_consen 48 EKVMDSLSKLYKLAKENNVSFE 69 (82)
T ss_pred HHHHHHHHHHHHHHHHcCCCHH
Confidence 3577788899999999999986
No 64
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=37.71 E-value=2e+02 Score=26.77 Aligned_cols=41 Identities=24% Similarity=0.332 Sum_probs=27.9
Q ss_pred HHHhhhccCCeeEEEEeecccccchHHHHHHHhcCCCCCCeEEEeeecCC
Q 046158 262 MIMKVSEKASTLHIVDFGIRYGFQWPMLIQFLSMRTGGPPRLRITGIELP 311 (542)
Q Consensus 262 aIleA~~g~~~VHIIDfgI~~G~QWp~Liq~LA~R~gGPP~LRITgI~~p 311 (542)
.|++.+.-...-+|+|+|.|.|. |...|+.+ + -++|+|+..
T Consensus 4 ~i~~~~~~~~~~~vLEiG~G~G~----lt~~l~~~-~----~~v~~vE~~ 44 (169)
T smart00650 4 KIVRAANLRPGDTVLEIGPGKGA----LTEELLER-A----ARVTAIEID 44 (169)
T ss_pred HHHHhcCCCCcCEEEEECCCccH----HHHHHHhc-C----CeEEEEECC
Confidence 45666543344489999999885 55556666 2 379999964
No 65
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=36.16 E-value=4e+02 Score=25.60 Aligned_cols=44 Identities=25% Similarity=0.366 Sum_probs=27.4
Q ss_pred CCeeEEEEeecccccchHHHHHHHhcCCCCCCeEEEeeecCCCCCCCChHHHHHHHHHH
Q 046158 270 ASTLHIVDFGIRYGFQWPMLIQFLSMRTGGPPRLRITGIELPQPGFRPAERIEETGRRL 328 (542)
Q Consensus 270 ~~~VHIIDfgI~~G~QWp~Liq~LA~R~gGPP~LRITgI~~p~~gf~p~~~leetG~rL 328 (542)
.+..+|+|+|-+.|.- ...|+.+ + .++|||+.. ...++.+.+++
T Consensus 62 ~~~~~vLDvGcG~G~~----~~~l~~~--~---~~v~~~D~s------~~~i~~a~~~~ 105 (230)
T PRK07580 62 LTGLRILDAGCGVGSL----SIPLARR--G---AKVVASDIS------PQMVEEARERA 105 (230)
T ss_pred CCCCEEEEEeCCCCHH----HHHHHHc--C---CEEEEEECC------HHHHHHHHHHH
Confidence 3456899999998853 3345543 2 249999963 34455555544
No 66
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=35.18 E-value=1.9e+02 Score=29.36 Aligned_cols=71 Identities=15% Similarity=0.326 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHhhhCCcchhhHHHHhHHHHhhhccCCeeEEEEeecccccchHHHHHHHhcCCCCCCeEEEeeecCC
Q 046158 235 AADMLKAYKVYLSACPFKKLAIMFTIKMIMKVSEKASTLHIVDFGIRYGFQWPMLIQFLSMRTGGPPRLRITGIELP 311 (542)
Q Consensus 235 ~~~~l~Ay~~f~~~~Pf~kfa~~~ANqaIleA~~g~~~VHIIDfgI~~G~QWp~Liq~LA~R~gGPP~LRITgI~~p 311 (542)
..++.+|.+.|.+..=|..+....+ ..|.+.+ ....-+|+|+|.|.|.--..|.+.+... ....++|||..
T Consensus 51 ~~~~~~ar~~fl~~g~y~~l~~~i~-~~l~~~l-~~~~~~vLDiGcG~G~~~~~l~~~~~~~----~~~~v~giD~s 121 (272)
T PRK11088 51 NKEMMQARRAFLDAGHYQPLRDAVA-NLLAERL-DEKATALLDIGCGEGYYTHALADALPEI----TTMQLFGLDIS 121 (272)
T ss_pred CHHHHHHHHHHHHCCChHHHHHHHH-HHHHHhc-CCCCCeEEEECCcCCHHHHHHHHhcccc----cCCeEEEECCC
Confidence 3467777777665433332222221 2232322 2344679999999996444444433211 12579999963
No 67
>PF13552 DUF4127: Protein of unknown function (DUF4127)
Probab=34.54 E-value=71 Score=36.00 Aligned_cols=62 Identities=24% Similarity=0.387 Sum_probs=44.7
Q ss_pred cccccccccccCCCchHHHHHHHHhhCCCEEEE--E-ee-----cCCCCCCchHHHHHHHHHHHHHHHHHhhc
Q 046158 372 RFKNLLDETVDVNCPRNSVLKLIRKIKPDIFVN--S-IV-----NGSYNAPFFVTRFREAIFHFSSLFDMFDT 436 (542)
Q Consensus 372 ~L~~L~des~~~~sprd~vL~~Ir~L~P~V~v~--~-e~-----~~~~nsp~F~~RF~EAL~~YsAlFDsLda 436 (542)
|.|++..+.+ --|-.+|+.+|+.+|++=|. . ++ +++...|..-..+...++.|+.+.|-.+.
T Consensus 78 R~~~~~~~~~---~~rl~~l~~lk~~~p~~~iyaf~~ImR~~~~~~~~eep~yy~~yg~~i~~~~~l~dk~~~ 147 (497)
T PF13552_consen 78 RIHHLSLEEA---LERLERLRELKARNPNLPIYAFSTIMRTPPYSSSDEEPDYYADYGRKIFRYSQLLDKEEG 147 (497)
T ss_pred cCCCCCHHHH---HHHHHHHHHHHHHCCCCeEEEEEEEeccCCCCCCCCCcHHHHHHHHHHHHHHHhhhhhhh
Confidence 5666654432 23567899999999985332 2 22 34556788889999999999999998884
No 68
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=33.60 E-value=2.9e+02 Score=26.62 Aligned_cols=98 Identities=18% Similarity=0.287 Sum_probs=50.0
Q ss_pred EEEEeecccccchHHHHHHHhcCCCCCCeEEEeeecCCCCCCCChHHHHHHHHHHHHHHHhcCCcEEEEEeeCCCccccc
Q 046158 274 HIVDFGIRYGFQWPMLIQFLSMRTGGPPRLRITGIELPQPGFRPAERIEETGRRLLKYCQRFNVPFEYNCIASQNWETIQ 353 (542)
Q Consensus 274 HIIDfgI~~G~QWp~Liq~LA~R~gGPP~LRITgI~~p~~gf~p~~~leetG~rL~~~A~~~gVpFeF~~I~~~~~E~l~ 353 (542)
+|+|+|-+.|. +...++++. |..++|||+.. .+.++.+.+++. ..|+.-....+. ...+...
T Consensus 2 ~vLDiGcG~G~----~~~~la~~~---~~~~v~gid~s------~~~~~~a~~~~~----~~gl~~~i~~~~-~d~~~~~ 63 (224)
T smart00828 2 RVLDFGCGYGS----DLIDLAERH---PHLQLHGYTIS------PEQAEVGRERIR----ALGLQGRIRIFY-RDSAKDP 63 (224)
T ss_pred eEEEECCCCCH----HHHHHHHHC---CCCEEEEEECC------HHHHHHHHHHHH----hcCCCcceEEEe-cccccCC
Confidence 68999988874 344566543 34689999863 344555544443 335433222222 2221111
Q ss_pred ccccccCCCceEEEEecccccccccccccCCCchHHHHHHH-HhhCCCEEE
Q 046158 354 IEDLKINPDEVLAVNSLFRFKNLLDETVDVNCPRNSVLKLI-RKIKPDIFV 403 (542)
Q Consensus 354 ~~dL~i~~~E~LaVN~~~~L~~L~des~~~~sprd~vL~~I-r~L~P~V~v 403 (542)
.. ..=++ |-+...++|+.+ ...+|+.+ +-|+|.-.+
T Consensus 64 ~~----~~fD~--I~~~~~l~~~~~--------~~~~l~~~~~~LkpgG~l 100 (224)
T smart00828 64 FP----DTYDL--VFGFEVIHHIKD--------KMDLFSNISRHLKDGGHL 100 (224)
T ss_pred CC----CCCCE--eehHHHHHhCCC--------HHHHHHHHHHHcCCCCEE
Confidence 11 11122 224445566632 34566666 558998543
No 69
>TIGR01716 RGG_Cterm transcriptional activator, Rgg/GadR/MutR family, C-terminal domain. This model describes the whole, except for a 60 residue N-terminal helix-turn-helix DNA-binding domain (PFAM pfam01381) of the family of proteins related to the transcriptional regulator Rgg, also called RopB. Rgg is required for secretion of several proteins, including a cysteine proteinase associated with virulence. GadR is a positive regulator of a glutamate-dependent acid resistance mechanism. MutR is a transcriptional activator for mutacin biosynthesis genes in Streptococcus mutans. This family appears restricted to the low-GC Gram-positive bacteria, including at least eight members in Lactococcus lactis.
Probab=33.19 E-value=84 Score=30.41 Aligned_cols=55 Identities=20% Similarity=0.271 Sum_probs=45.5
Q ss_pred HHHHHHHHH-HHHhcCCHHHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHHhhcc
Q 046158 163 LRTLLILCA-QAVSSNDYRTANELLKQIRQHSSLTGDGSQRLAHWFANGLEARMAG 217 (542)
Q Consensus 163 L~~LL~~CA-~AV~~~d~~~A~~lL~~I~~~sSp~Gd~~QRLA~yFaeAL~aRl~g 217 (542)
+.++|+.|. ..+..++...|..+|..|.++..|..+...|+...|.+|+-.=..|
T Consensus 127 i~~il~N~~~~~i~~~~~~~a~~~l~~l~~l~~~~~~~~~ki~~~f~~~l~~y~~g 182 (220)
T TIGR01716 127 VIQLLLNIAVLLIEKNEFSYAQYFLEKLEKILDPEDDLYERILFNFLKGIILYKEG 182 (220)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHHHHcC
Confidence 556666666 6678889999999999999999888788899999999998665444
No 70
>KOG2324 consensus Prolyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=32.34 E-value=63 Score=35.24 Aligned_cols=39 Identities=28% Similarity=0.451 Sum_probs=24.3
Q ss_pred HHHHHHHHHHhcCCcEEEEEeeCCCcccccccccccCCCc
Q 046158 324 TGRRLLKYCQRFNVPFEYNCIASQNWETIQIEDLKINPDE 363 (542)
Q Consensus 324 tG~rL~~~A~~~gVpFeF~~I~~~~~E~l~~~dL~i~~~E 363 (542)
+|.||. -|+++|+||-...=.+..|+....|-..++.||
T Consensus 375 iG~Ri~-dA~~lG~PfviVvg~s~~~~~~~~EV~~~~~ge 413 (457)
T KOG2324|consen 375 IGKRIK-DANRLGIPFVIVVGNSASWDNPEIEVRTIRWGE 413 (457)
T ss_pred hHHhhh-hHHhcCCCEEEEEcccccCCCceEEEEEeecCc
Confidence 466665 589999999865543455666555544444444
No 71
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=30.95 E-value=2.4e+02 Score=27.49 Aligned_cols=78 Identities=17% Similarity=0.402 Sum_probs=41.9
Q ss_pred CeeEEEEeecccccchHHHHHHHhcCCCCCCeEEEeeecCCCCCCCChHHHHHHHHHHHHHHHhcCCc-EEEEEeeCCCc
Q 046158 271 STLHIVDFGIRYGFQWPMLIQFLSMRTGGPPRLRITGIELPQPGFRPAERIEETGRRLLKYCQRFNVP-FEYNCIASQNW 349 (542)
Q Consensus 271 ~~VHIIDfgI~~G~QWp~Liq~LA~R~gGPP~LRITgI~~p~~gf~p~~~leetG~rL~~~A~~~gVp-FeF~~I~~~~~ 349 (542)
...+|+|+|.|.| .+...++.+. |...+|||+.. ...++.+.++ ++..|++ .+| +. .++
T Consensus 87 ~~~~ilDig~G~G----~~~~~l~~~~---~~~~v~~iD~~------~~~~~~a~~~----~~~~~~~~~~~--~~-~d~ 146 (251)
T TIGR03534 87 GPLRVLDLGTGSG----AIALALAKER---PDARVTAVDIS------PEALAVARKN----AARLGLDNVTF--LQ-SDW 146 (251)
T ss_pred CCCeEEEEeCcHh----HHHHHHHHHC---CCCEEEEEECC------HHHHHHHHHH----HHHcCCCeEEE--EE-Cch
Confidence 3468999999998 3344444432 45689999963 3334444333 3445665 333 33 222
Q ss_pred ccccccccccCCCceEEEEeccc
Q 046158 350 ETIQIEDLKINPDEVLAVNSLFR 372 (542)
Q Consensus 350 E~l~~~dL~i~~~E~LaVN~~~~ 372 (542)
.+ .+.-.+-++|+.|-.|.
T Consensus 147 ~~----~~~~~~fD~Vi~npPy~ 165 (251)
T TIGR03534 147 FE----PLPGGKFDLIVSNPPYI 165 (251)
T ss_pred hc----cCcCCceeEEEECCCCC
Confidence 21 11112235777777664
No 72
>TIGR02129 hisA_euk phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase, eukaryotic type. This enzyme acts in the biosynthesis of histidine and has been characterized in S. cerevisiae and Arabidopsis where it complements the E. coli HisA gene. In eukaryotes the gene is known as HIS6. In bacteria, this gene is found in Fibrobacter succinogenes, presumably due to lateral gene transfer from plants in the rumen gut.
Probab=30.45 E-value=62 Score=33.39 Aligned_cols=27 Identities=4% Similarity=-0.169 Sum_probs=19.1
Q ss_pred ccCCeeEEEEeecccccchHHHHHHHhcCCC
Q 046158 268 EKASTLHIVDFGIRYGFQWPMLIQFLSMRTG 298 (542)
Q Consensus 268 ~g~~~VHIIDfgI~~G~QWp~Liq~LA~R~g 298 (542)
.|.+.|||||+ +.+ |+ .+|+.+++-.+
T Consensus 50 ~Ga~~lHvVDL--g~~-n~-~~i~~i~~~~~ 76 (253)
T TIGR02129 50 DGVKGCHVIML--GPN-ND-DAAKEALHAYP 76 (253)
T ss_pred cCCCEEEEEEC--CCC-cH-HHHHHHHHhCC
Confidence 48999999999 444 66 56666665443
No 73
>PLN02446 (5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase
Probab=29.88 E-value=60 Score=33.70 Aligned_cols=27 Identities=11% Similarity=0.127 Sum_probs=20.8
Q ss_pred ccCCeeEEEEeecccccchHHHHHHHhc
Q 046158 268 EKASTLHIVDFGIRYGFQWPMLIQFLSM 295 (542)
Q Consensus 268 ~g~~~VHIIDfgI~~G~QWp~Liq~LA~ 295 (542)
.|.+.+||||+|-+.+-+ -.+|.++++
T Consensus 55 ~Ga~~lHvVDLdgg~~~n-~~~i~~i~~ 81 (262)
T PLN02446 55 DGLTGGHVIMLGADDASL-AAALEALRA 81 (262)
T ss_pred CCCCEEEEEECCCCCccc-HHHHHHHHh
Confidence 489999999998766666 456777776
No 74
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=29.62 E-value=4.7e+02 Score=24.43 Aligned_cols=41 Identities=15% Similarity=0.229 Sum_probs=27.4
Q ss_pred EEEEeecccccchHHHHHHHhcCCCCCCeEEEeeecCCCCCCCChHHHHHHHHHHH
Q 046158 274 HIVDFGIRYGFQWPMLIQFLSMRTGGPPRLRITGIELPQPGFRPAERIEETGRRLL 329 (542)
Q Consensus 274 HIIDfgI~~G~QWp~Liq~LA~R~gGPP~LRITgI~~p~~gf~p~~~leetG~rL~ 329 (542)
.|+|+|.+.|. +...++.+ ++ ++|+|+.. .+.++.+.+++.
T Consensus 22 ~vLdlG~G~G~----~~~~l~~~--~~---~v~~vD~s------~~~~~~a~~~~~ 62 (179)
T TIGR00537 22 DVLEIGAGTGL----VAIRLKGK--GK---CILTTDIN------PFAVKELRENAK 62 (179)
T ss_pred eEEEeCCChhH----HHHHHHhc--CC---EEEEEECC------HHHHHHHHHHHH
Confidence 49999999983 44556654 33 89999863 345565555553
No 75
>TIGR03183 DNA_S_dndC putative sulfurtransferase DndC. Members of this protein family are the DndC protein from the dnd (degradation during electrophoresis) operon. The dnd phenotype reflects a sulfur-containing modification to DNA. This operon is sparsely and sporadically distributed among bactera; among the first eight examples are members from the Actinobacteria, Firmicutes, Gammaproteobacteria, Cyanobacteria. DndC is suggested to be a sulfurtransferase.
Probab=29.27 E-value=1.4e+02 Score=33.27 Aligned_cols=81 Identities=14% Similarity=0.132 Sum_probs=49.6
Q ss_pred HHHHhhhccCCeeEEEEeecccccchH--HHHHHHhcCC--CCCCeEEE----eeecCCCCCCCChHHHHHHHHHHHHHH
Q 046158 261 KMIMKVSEKASTLHIVDFGIRYGFQWP--MLIQFLSMRT--GGPPRLRI----TGIELPQPGFRPAERIEETGRRLLKYC 332 (542)
Q Consensus 261 qaIleA~~g~~~VHIIDfgI~~G~QWp--~Liq~LA~R~--gGPP~LRI----TgI~~p~~gf~p~~~leetG~rL~~~A 332 (542)
.+|-+......+-+||=|..|---.=. -..++|...| +..+.+.+ |+++.|.. .+.++.+-.++.++|
T Consensus 3 ~~i~~~y~~~~~p~vV~fSGGKDSta~L~Lv~~Al~~lp~e~~~k~v~VI~~DTgvE~Pe~----~~~v~~~l~~i~~~a 78 (447)
T TIGR03183 3 EEIQELYLSDDIPWVVGYSGGKDSTAVLQLIWNALAALPAEQRTKKIHVISTDTLVENPIV----AAWVNASLERMQEAA 78 (447)
T ss_pred HHHHHHHHhcCCceEEEeCCCHHHHHHHHHHHHHHHhccccccCcceEEEECcCCCccHHH----HHHHHHHHHHHHHHH
Confidence 345555555566677777755221100 0112333211 22355777 77776643 467888889999999
Q ss_pred HhcCCcEEEEEee
Q 046158 333 QRFNVPFEYNCIA 345 (542)
Q Consensus 333 ~~~gVpFeF~~I~ 345 (542)
++.|+||..+.+.
T Consensus 79 ~~~~lpi~~~~v~ 91 (447)
T TIGR03183 79 QDQGLPIEPHRLT 91 (447)
T ss_pred HHcCCCeEEEecC
Confidence 9999999988775
No 76
>PF07521 RMMBL: RNA-metabolising metallo-beta-lactamase; InterPro: IPR011108 The metallo-beta-lactamase fold contains five sequence motifs. The first four motifs are found in IPR001279 from INTERPRO and are common to all metallo-beta-lactamases. The fifth motif appears to be specific to function. This entry represents the fifth motif from metallo-beta-lactamases involved in RNA metabolism [].; PDB: 3ZQ4_D 2I7T_A 2I7V_A 2YCB_B 3BK1_A 3T3N_A 3BK2_A 3T3O_A 3AF5_A 3AF6_A ....
Probab=29.13 E-value=1.2e+02 Score=22.40 Aligned_cols=37 Identities=16% Similarity=0.328 Sum_probs=22.6
Q ss_pred ceEEEEecccccccccccccCCCchHHHHHHHHhhCCCEEEE
Q 046158 363 EVLAVNSLFRFKNLLDETVDVNCPRNSVLKLIRKIKPDIFVN 404 (542)
Q Consensus 363 E~LaVN~~~~L~~L~des~~~~sprd~vL~~Ir~L~P~V~v~ 404 (542)
|.+-|||....-++. .-..++.++..|+.++|+-+++
T Consensus 1 e~i~v~a~v~~~~fS-----gHad~~~L~~~i~~~~p~~vil 37 (43)
T PF07521_consen 1 EMIPVRARVEQIDFS-----GHADREELLEFIEQLNPRKVIL 37 (43)
T ss_dssp CEEE--SEEEESGCS-----SS-BHHHHHHHHHHHCSSEEEE
T ss_pred CEEEeEEEEEEEeec-----CCCCHHHHHHHHHhcCCCEEEE
Confidence 345677643322232 2356889999999999997765
No 77
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=28.86 E-value=1.9e+02 Score=27.18 Aligned_cols=119 Identities=16% Similarity=0.216 Sum_probs=60.4
Q ss_pred HHhHHHHhhhccCCeeEEEEeecccccchHHHHHHHhcCCCCCCeEEEeeecCCCCCCCChHHHHHHHHHHHHHHHhcCC
Q 046158 258 FTIKMIMKVSEKASTLHIVDFGIRYGFQWPMLIQFLSMRTGGPPRLRITGIELPQPGFRPAERIEETGRRLLKYCQRFNV 337 (542)
Q Consensus 258 ~ANqaIleA~~g~~~VHIIDfgI~~G~QWp~Liq~LA~R~gGPP~LRITgI~~p~~gf~p~~~leetG~rL~~~A~~~gV 337 (542)
.+...+++.+.....=+|+|+|.|.|. +=-.|+.+. |..++|++|.. ...++-+.+. ++..++
T Consensus 18 ~~t~lL~~~l~~~~~~~vLDlG~G~G~----i~~~la~~~---~~~~v~~vDi~------~~a~~~a~~n----~~~n~~ 80 (170)
T PF05175_consen 18 AGTRLLLDNLPKHKGGRVLDLGCGSGV----ISLALAKRG---PDAKVTAVDIN------PDALELAKRN----AERNGL 80 (170)
T ss_dssp HHHHHHHHHHHHHTTCEEEEETSTTSH----HHHHHHHTS---TCEEEEEEESB------HHHHHHHHHH----HHHTTC
T ss_pred HHHHHHHHHHhhccCCeEEEecCChHH----HHHHHHHhC---CCCEEEEEcCC------HHHHHHHHHH----HHhcCc
Confidence 355567777766566779999999983 222344442 67889999963 3444444333 445566
Q ss_pred cEEEEEeeCCCcccccccccccCCCceEEEEecccccccccccccCCCchHHH-HHHHHhhCCCEEEE
Q 046158 338 PFEYNCIASQNWETIQIEDLKINPDEVLAVNSLFRFKNLLDETVDVNCPRNSV-LKLIRKIKPDIFVN 404 (542)
Q Consensus 338 pFeF~~I~~~~~E~l~~~dL~i~~~E~LaVN~~~~L~~L~des~~~~sprd~v-L~~Ir~L~P~V~v~ 404 (542)
.- .+.+...-.+.+. -.+=++++.|=.+. .-.++.. .....+ -..-+-|+|.-...
T Consensus 81 ~~-v~~~~~d~~~~~~-----~~~fD~Iv~NPP~~--~~~~~~~---~~~~~~i~~a~~~Lk~~G~l~ 137 (170)
T PF05175_consen 81 EN-VEVVQSDLFEALP-----DGKFDLIVSNPPFH--AGGDDGL---DLLRDFIEQARRYLKPGGRLF 137 (170)
T ss_dssp TT-EEEEESSTTTTCC-----TTCEEEEEE---SB--TTSHCHH---HHHHHHHHHHHHHEEEEEEEE
T ss_pred cc-ccccccccccccc-----ccceeEEEEccchh--cccccch---hhHHHHHHHHHHhccCCCEEE
Confidence 52 3333322223222 11224777776632 2212110 122333 34446689986443
No 78
>PF07522 DRMBL: DNA repair metallo-beta-lactamase; InterPro: IPR011084 The metallo-beta-lactamase fold contains five sequence motifs. The first four motifs are found in IPR001279 from INTERPRO and are common to all metallo-beta-lactamases. The fifth motif appears to be specific to function. This entry represents the fifth motif from metallo-beta-lactamases involved in DNA repair [].
Probab=27.01 E-value=2.4e+02 Score=24.74 Aligned_cols=36 Identities=8% Similarity=0.175 Sum_probs=26.5
Q ss_pred CCceEEEEecccccccccccccCCCchHHHHHHHHhhCCCEEEEEe
Q 046158 361 PDEVLAVNSLFRFKNLLDETVDVNCPRNSVLKLIRKIKPDIFVNSI 406 (542)
Q Consensus 361 ~~E~LaVN~~~~L~~L~des~~~~sprd~vL~~Ir~L~P~V~v~~e 406 (542)
.+..-+....|..| |+..++...++.++|+-++=++
T Consensus 71 ~~~~~~~~VPYSeH----------SSf~EL~~Fv~~l~P~~IiPtV 106 (110)
T PF07522_consen 71 RGNVRIYRVPYSEH----------SSFSELKEFVSFLKPKKIIPTV 106 (110)
T ss_pred CCCceEEEEecccC----------CCHHHHHHHHHhcCCcEEEccc
Confidence 34556666666655 6778899999999999887443
No 79
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=26.95 E-value=4.8e+02 Score=28.04 Aligned_cols=33 Identities=21% Similarity=0.232 Sum_probs=22.4
Q ss_pred CeeEEEEeecccccchHHHHHHHhcCCCCCCeEEEeeecC
Q 046158 271 STLHIVDFGIRYGFQWPMLIQFLSMRTGGPPRLRITGIEL 310 (542)
Q Consensus 271 ~~VHIIDfgI~~G~QWp~Liq~LA~R~gGPP~LRITgI~~ 310 (542)
...+|+|+|.+.|.-.. .|+++.++ .++|+||.
T Consensus 113 ~~~~VLDLGcGtG~~~l----~La~~~~~---~~VtgVD~ 145 (340)
T PLN02490 113 RNLKVVDVGGGTGFTTL----GIVKHVDA---KNVTILDQ 145 (340)
T ss_pred CCCEEEEEecCCcHHHH----HHHHHCCC---CEEEEEEC
Confidence 45689999999996333 34433322 58999986
No 80
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=26.46 E-value=5.3e+02 Score=23.95 Aligned_cols=30 Identities=30% Similarity=0.442 Sum_probs=19.6
Q ss_pred eEEEEecccccccccccccCCCchHHHHHHH-HhhCCCE
Q 046158 364 VLAVNSLFRFKNLLDETVDVNCPRNSVLKLI-RKIKPDI 401 (542)
Q Consensus 364 ~LaVN~~~~L~~L~des~~~~sprd~vL~~I-r~L~P~V 401 (542)
.=+|-+.+.+|++.| +..+|+.+ |-|+|.-
T Consensus 45 fD~v~~~~~l~~~~d--------~~~~l~ei~rvLkpGG 75 (160)
T PLN02232 45 FDAVTMGYGLRNVVD--------RLRAMKEMYRVLKPGS 75 (160)
T ss_pred eeEEEecchhhcCCC--------HHHHHHHHHHHcCcCe
Confidence 335556788888854 34556555 6799984
No 81
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=25.82 E-value=1.2e+02 Score=30.14 Aligned_cols=52 Identities=23% Similarity=0.351 Sum_probs=35.0
Q ss_pred hhhccCCeeEEEEeecccc---cchHHHHHHHhcCCCCCCeEEEeeecCCCCCCCChHHHHHHHHHHHHHH
Q 046158 265 KVSEKASTLHIVDFGIRYG---FQWPMLIQFLSMRTGGPPRLRITGIELPQPGFRPAERIEETGRRLLKYC 332 (542)
Q Consensus 265 eA~~g~~~VHIIDfgI~~G---~QWp~Liq~LA~R~gGPP~LRITgI~~p~~gf~p~~~leetG~rL~~~A 332 (542)
-+++=.+.=|++|+|-+.| .+|. ++ .|..|+++|+- ..+.++-|.+.+.+|.
T Consensus 28 s~L~~~~g~~l~DIGaGtGsi~iE~a-~~---------~p~~~v~AIe~------~~~a~~~~~~N~~~fg 82 (187)
T COG2242 28 SKLRPRPGDRLWDIGAGTGSITIEWA-LA---------GPSGRVIAIER------DEEALELIERNAARFG 82 (187)
T ss_pred HhhCCCCCCEEEEeCCCccHHHHHHH-Hh---------CCCceEEEEec------CHHHHHHHHHHHHHhC
Confidence 3444444459999999887 4664 11 27899999984 4567777777765554
No 82
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=25.61 E-value=1.7e+02 Score=30.87 Aligned_cols=107 Identities=14% Similarity=0.143 Sum_probs=60.4
Q ss_pred HHHhhhccCCeeEEEEeecccccchHHHHHHHhcCCCCCCeEEEeeecCCCCCCCChHHHHHHHHHHHHHHHhcCCcEEE
Q 046158 262 MIMKVSEKASTLHIVDFGIRYGFQWPMLIQFLSMRTGGPPRLRITGIELPQPGFRPAERIEETGRRLLKYCQRFNVPFEY 341 (542)
Q Consensus 262 aIleA~~g~~~VHIIDfgI~~G~QWp~Liq~LA~R~gGPP~LRITgI~~p~~gf~p~~~leetG~rL~~~A~~~gVpFeF 341 (542)
.+++++.-...-.+||.+.|.|..=-.+++.+ ||..++.|||. ..+.++.+..+|.+ +. .|+|
T Consensus 10 Evl~~L~~~pg~~vlD~TlG~GGhS~~il~~~------~~~g~VigiD~------D~~al~~ak~~L~~-~~----ri~~ 72 (296)
T PRK00050 10 EVVDALAIKPDGIYVDGTFGGGGHSRAILERL------GPKGRLIAIDR------DPDAIAAAKDRLKP-FG----RFTL 72 (296)
T ss_pred HHHHhhCCCCCCEEEEeCcCChHHHHHHHHhC------CCCCEEEEEcC------CHHHHHHHHHhhcc-CC----cEEE
Confidence 45566543444479999999997666555543 45678999995 35778888888865 21 3443
Q ss_pred EEeeCCCcccccc--cccccCCCceEEEEecccccccccc----cccCCCchHH
Q 046158 342 NCIASQNWETIQI--EDLKINPDEVLAVNSLFRFKNLLDE----TVDVNCPRNS 389 (542)
Q Consensus 342 ~~I~~~~~E~l~~--~dL~i~~~E~LaVN~~~~L~~L~de----s~~~~sprd~ 389 (542)
+. .+..++.. .+ ++..=..++.++-..-++|-+. |...+.|.|+
T Consensus 73 --i~-~~f~~l~~~l~~-~~~~vDgIl~DLGvSs~Qld~~~RGFSf~~~gpLDM 122 (296)
T PRK00050 73 --VH-GNFSNLKEVLAE-GLGKVDGILLDLGVSSPQLDDAERGFSFRKDGPLDM 122 (296)
T ss_pred --Ee-CCHHHHHHHHHc-CCCccCEEEECCCccccccCCCcCCcccCCCCCCcC
Confidence 43 33433321 11 2222235666665555555332 1223456664
No 83
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=24.72 E-value=3.1e+02 Score=28.67 Aligned_cols=85 Identities=15% Similarity=0.206 Sum_probs=43.0
Q ss_pred HHhhhccCCeeEEEEeecccccchHHHHHHHhcCCCCCCeEEEeeecCCCCCCCChHHHHHHHHHHHHHHHhcCCcEEEE
Q 046158 263 IMKVSEKASTLHIVDFGIRYGFQWPMLIQFLSMRTGGPPRLRITGIELPQPGFRPAERIEETGRRLLKYCQRFNVPFEYN 342 (542)
Q Consensus 263 IleA~~g~~~VHIIDfgI~~G~QWp~Liq~LA~R~gGPP~LRITgI~~p~~gf~p~~~leetG~rL~~~A~~~gVpFeF~ 342 (542)
|++++.-...=.|+|+|-|.|. |-..|+.+. -++|+|+.. ...++...+++..+ +..=.+.
T Consensus 28 Iv~~~~~~~~~~VLEIG~G~G~----LT~~Ll~~~-----~~V~avEiD------~~li~~l~~~~~~~----~~~~~v~ 88 (294)
T PTZ00338 28 IVEKAAIKPTDTVLEIGPGTGN----LTEKLLQLA-----KKVIAIEID------PRMVAELKKRFQNS----PLASKLE 88 (294)
T ss_pred HHHhcCCCCcCEEEEecCchHH----HHHHHHHhC-----CcEEEEECC------HHHHHHHHHHHHhc----CCCCcEE
Confidence 3333333344479999999885 444455442 268999863 23344444444322 2211233
Q ss_pred EeeCCCcccccccccccCCCceEEEEeccc
Q 046158 343 CIASQNWETIQIEDLKINPDEVLAVNSLFR 372 (542)
Q Consensus 343 ~I~~~~~E~l~~~dL~i~~~E~LaVN~~~~ 372 (542)
.+. .....+....+ ..++.|..|.
T Consensus 89 ii~-~Dal~~~~~~~-----d~VvaNlPY~ 112 (294)
T PTZ00338 89 VIE-GDALKTEFPYF-----DVCVANVPYQ 112 (294)
T ss_pred EEE-CCHhhhccccc-----CEEEecCCcc
Confidence 333 32322222211 3788888886
No 84
>PRK14968 putative methyltransferase; Provisional
Probab=24.32 E-value=5.6e+02 Score=23.53 Aligned_cols=42 Identities=12% Similarity=0.268 Sum_probs=28.0
Q ss_pred eeEEEEeecccccchHHHHHHHhcCCCCCCeEEEeeecCCCCCCCChHHHHHHHHHH
Q 046158 272 TLHIVDFGIRYGFQWPMLIQFLSMRTGGPPRLRITGIELPQPGFRPAERIEETGRRL 328 (542)
Q Consensus 272 ~VHIIDfgI~~G~QWp~Liq~LA~R~gGPP~LRITgI~~p~~gf~p~~~leetG~rL 328 (542)
.-.|+|+|.+.|. +...|+.+ + .+|||++.. .+.++.+.+++
T Consensus 24 ~~~vLd~G~G~G~----~~~~l~~~-~----~~v~~~D~s------~~~~~~a~~~~ 65 (188)
T PRK14968 24 GDRVLEVGTGSGI----VAIVAAKN-G----KKVVGVDIN------PYAVECAKCNA 65 (188)
T ss_pred CCEEEEEccccCH----HHHHHHhh-c----ceEEEEECC------HHHHHHHHHHH
Confidence 3469999999997 45556655 2 589999863 34455554444
No 85
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=24.28 E-value=3.9e+02 Score=27.02 Aligned_cols=46 Identities=20% Similarity=0.254 Sum_probs=28.7
Q ss_pred HHHhHHHHhhh----ccCCeeEEEEeecccccchHHHHHHHhcCCCCCCeEEEeeecCC
Q 046158 257 MFTIKMIMKVS----EKASTLHIVDFGIRYGFQWPMLIQFLSMRTGGPPRLRITGIELP 311 (542)
Q Consensus 257 ~~ANqaIleA~----~g~~~VHIIDfgI~~G~QWp~Liq~LA~R~gGPP~LRITgI~~p 311 (542)
|..++.|++.+ .-.+.=+|+|+|-|.|. |...|+.+. .++|+|+..
T Consensus 11 fl~d~~~~~~iv~~~~~~~~~~VLEIG~G~G~----lt~~L~~~~-----~~v~~vEid 60 (258)
T PRK14896 11 FLIDDRVVDRIVEYAEDTDGDPVLEIGPGKGA----LTDELAKRA-----KKVYAIELD 60 (258)
T ss_pred ccCCHHHHHHHHHhcCCCCcCeEEEEeCccCH----HHHHHHHhC-----CEEEEEECC
Confidence 33444444443 22344579999999985 555566552 279999963
No 86
>PF05582 Peptidase_U57: YabG peptidase U57; InterPro: IPR008764 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. The peptidases families associated with clan U- have an unknown catalytic mechanism as the protein fold of the active site domain and the active site residues have not been reported. This is a group of peptidases belong to MEROPS peptidase family U57 (clan U-). The type example is the YabG protein of Bacillus subtilis. This is a protease involved in the synthesis and maturation of the spore coat proteins SpoIVA and YrbA of B. subtilis [].
Probab=23.71 E-value=75 Score=33.40 Aligned_cols=39 Identities=28% Similarity=0.481 Sum_probs=31.5
Q ss_pred HHHHHHHHhhCCCEEEEEeecC-------------CCCCCchHHHHHHHHHH
Q 046158 388 NSVLKLIRKIKPDIFVNSIVNG-------------SYNAPFFVTRFREAIFH 426 (542)
Q Consensus 388 d~vL~~Ir~L~P~V~v~~e~~~-------------~~nsp~F~~RF~EAL~~ 426 (542)
+.+.+++...+|||+|++-.+| -.||-.|++=.++|-.|
T Consensus 144 ~~i~~Ll~~~~PDIlViTGHD~~~K~~~d~~dl~~YrnSkyFVeaV~~aR~~ 195 (287)
T PF05582_consen 144 EKIYRLLEEYRPDILVITGHDGYLKNKKDYSDLNNYRNSKYFVEAVKEARKY 195 (287)
T ss_pred HHHHHHHHHcCCCEEEEeCchhhhcCCCChhhhhhhhccHHHHHHHHHHHhc
Confidence 6799999999999999987665 14788888888877654
No 87
>COG1500 Predicted exosome subunit [Translation, ribosomal structure and biogenesis]
Probab=23.56 E-value=2.7e+02 Score=28.50 Aligned_cols=79 Identities=16% Similarity=0.189 Sum_probs=55.2
Q ss_pred HHHHHHHHHhhc-cCCCCCHHH-HHHHHHHHHHHHHHHHhhcCCccccc-ccchhhHHHHHHhCCCccccCCHHHHHHHH
Q 046158 425 FHFSSLFDMFDT-TMPREDPER-LMFEREVYGREAMNVIACEGLERVER-PETYKQWQARTIRAGFKQLPLNQELMEKLM 501 (542)
Q Consensus 425 ~~YsAlFDsLda-~~pr~~~~R-~~iE~~~~greI~NvVAcEG~eRvER-~E~~~qW~~R~~rAGF~~~pLs~~~~~qa~ 501 (542)
.++.-.-+-|.. .++-..++| .++|. -.|+|.|+|+....+..-+ |-+-..=..-|..|||..-|+.+ +-.|+.
T Consensus 71 d~~eI~~eIl~kGeiQlTaeqR~~m~e~--k~rqIi~~IsRn~IdP~t~~P~Pp~rIe~Ameeakv~id~~K~-ae~Qv~ 147 (234)
T COG1500 71 DPDEIAEEILKKGEIQLTAEQRREMLEE--KKRQIINIISRNAIDPQTKAPHPPARIEKAMEEAKVHIDPFKS-AEEQVQ 147 (234)
T ss_pred CHHHHHHHHHhcCceeccHHHHHHHHHH--HHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHhcCcccCCCCC-HHHHHH
Confidence 344444455554 344444444 56665 3899999999998876555 77777888889999999999865 567777
Q ss_pred HHHHh
Q 046158 502 GKLKA 506 (542)
Q Consensus 502 ~~l~~ 506 (542)
..|+.
T Consensus 148 evlK~ 152 (234)
T COG1500 148 EVLKA 152 (234)
T ss_pred HHHHH
Confidence 76664
No 88
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=22.23 E-value=6.4e+02 Score=25.23 Aligned_cols=41 Identities=22% Similarity=0.333 Sum_probs=27.8
Q ss_pred HHHHhhhccCCeeEEEEeecccccchHHHHHHHhcCCCCCCeEEEeeecC
Q 046158 261 KMIMKVSEKASTLHIVDFGIRYGFQWPMLIQFLSMRTGGPPRLRITGIEL 310 (542)
Q Consensus 261 qaIleA~~g~~~VHIIDfgI~~G~QWp~Liq~LA~R~gGPP~LRITgI~~ 310 (542)
+.|++++...+.=.|+|+|-|.|. |...|+.+. + ++++|+.
T Consensus 19 ~~i~~~~~~~~~~~VLEiG~G~G~----lt~~L~~~~--~---~v~~iE~ 59 (253)
T TIGR00755 19 QKIVEAANVLEGDVVLEIGPGLGA----LTEPLLKRA--K---KVTAIEI 59 (253)
T ss_pred HHHHHhcCCCCcCEEEEeCCCCCH----HHHHHHHhC--C---cEEEEEC
Confidence 344455544455689999999986 666666653 2 3999986
No 89
>TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626. This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ.
Probab=21.97 E-value=2.3e+02 Score=27.81 Aligned_cols=89 Identities=10% Similarity=0.065 Sum_probs=57.5
Q ss_pred CeeEEEEeeccc---ccchHHHHHHHhcCCCCCCeEEE------eeecCCCCCCCChHHHHHHHHHHHHHHHhcCCcEEE
Q 046158 271 STLHIVDFGIRY---GFQWPMLIQFLSMRTGGPPRLRI------TGIELPQPGFRPAERIEETGRRLLKYCQRFNVPFEY 341 (542)
Q Consensus 271 ~~VHIIDfgI~~---G~QWp~Liq~LA~R~gGPP~LRI------TgI~~p~~gf~p~~~leetG~rL~~~A~~~gVpFeF 341 (542)
.+|+||.|=-+. +-.=-++|.+|+.+. +.+ |||+.. +....++.-+.+|+++.++.|-|
T Consensus 59 GKV~lvn~~Aswc~~c~~e~P~l~~l~~~~-----~~~~~y~~t~~IN~d-------d~~~~~~~fVk~fie~~~~~~P~ 126 (184)
T TIGR01626 59 GKVRVVHHIAGRTSAKEXNASLIDAIKAAK-----FPPVKYQTTTIINAD-------DAIVGTGMFVKSSAKKGKKENPW 126 (184)
T ss_pred CCEEEEEEEecCCChhhccchHHHHHHHcC-----CCcccccceEEEECc-------cchhhHHHHHHHHHHHhcccCCc
Confidence 589999986442 235568899996542 667 888742 34677889999999999988877
Q ss_pred EEeeCCCcccccccccccCCC-ce-EEEEeccc
Q 046158 342 NCIASQNWETIQIEDLKINPD-EV-LAVNSLFR 372 (542)
Q Consensus 342 ~~I~~~~~E~l~~~dL~i~~~-E~-LaVN~~~~ 372 (542)
..+.... +.....++++..- ++ .+||-.=.
T Consensus 127 ~~vllD~-~g~v~~~~gv~~~P~T~fVIDk~Gk 158 (184)
T TIGR01626 127 SQVVLDD-KGAVKNAWQLNSEDSAIIVLDKTGK 158 (184)
T ss_pred ceEEECC-cchHHHhcCCCCCCceEEEECCCCc
Confidence 6666322 2222234555432 55 57766443
No 90
>KOG1165 consensus Casein kinase (serine/threonine/tyrosine protein kinase) [Signal transduction mechanisms]
Probab=21.38 E-value=50 Score=35.87 Aligned_cols=14 Identities=43% Similarity=0.978 Sum_probs=11.5
Q ss_pred ccCCeeEEEEeecc
Q 046158 268 EKASTLHIVDFGIR 281 (542)
Q Consensus 268 ~g~~~VHIIDfgI~ 281 (542)
..+..|||||||+.
T Consensus 163 k~~n~IhiiDFGmA 176 (449)
T KOG1165|consen 163 KDANVIHIIDFGMA 176 (449)
T ss_pred CCCceEEEEeccch
Confidence 35679999999975
No 91
>PRK04148 hypothetical protein; Provisional
Probab=21.19 E-value=2.6e+02 Score=26.20 Aligned_cols=41 Identities=27% Similarity=0.427 Sum_probs=26.7
Q ss_pred HHhhhccCCeeEEEEeecccccchHHHHHHHhcCCCCCCeEEEeeecCC
Q 046158 263 IMKVSEKASTLHIVDFGIRYGFQWPMLIQFLSMRTGGPPRLRITGIELP 311 (542)
Q Consensus 263 IleA~~g~~~VHIIDfgI~~G~QWp~Liq~LA~R~gGPP~LRITgI~~p 311 (542)
|.+.....+...|+|.|+|+|+ .+-+.|++. | ..+|+||..
T Consensus 8 l~~~~~~~~~~kileIG~GfG~---~vA~~L~~~-G----~~ViaIDi~ 48 (134)
T PRK04148 8 IAENYEKGKNKKIVELGIGFYF---KVAKKLKES-G----FDVIVIDIN 48 (134)
T ss_pred HHHhcccccCCEEEEEEecCCH---HHHHHHHHC-C----CEEEEEECC
Confidence 4444444445679999999884 344455533 3 589999963
No 92
>COG3457 Predicted amino acid racemase [Amino acid transport and metabolism]
Probab=20.76 E-value=5.7e+02 Score=27.66 Aligned_cols=161 Identities=17% Similarity=0.190 Sum_probs=80.4
Q ss_pred hhhHHHHhHHHHhhhccCCeeE----EEEeecccccchHHHHHHHhcC---CCCCCeEEEeeecCCCCCCC---Ch-HHH
Q 046158 253 KLAIMFTIKMIMKVSEKASTLH----IVDFGIRYGFQWPMLIQFLSMR---TGGPPRLRITGIELPQPGFR---PA-ERI 321 (542)
Q Consensus 253 kfa~~~ANqaIleA~~g~~~VH----IIDfgI~~G~QWp~Liq~LA~R---~gGPP~LRITgI~~p~~gf~---p~-~~l 321 (542)
-..-.-.-+.|-+++....++| -||+|=.+--||+-+++.|-.- --.-|-++|-||+..-|-|. |. +.+
T Consensus 98 ~~sel~~arqlse~A~~~Gk~h~VlLmVd~~DlreG~~~~~~~~l~~~V~eI~~lkGi~~vGlgTnF~Cfg~v~PTp~n~ 177 (353)
T COG3457 98 TVSELDTARQLSEAAVRMGKVHDVLLMVDYGDLREGQWGFLIEDLEETVEEIQQLKGIHLVGLGTNFPCFGDVLPTPENL 177 (353)
T ss_pred EEecHHHHHHHHHHHHHhCcceeEEEEEEcccccCcchhhHHHHHHHHHHHHhcCCCceEEeeecccccccCcCCCcccH
Confidence 3444555667777776655555 5788888888998666665421 11345699999966544442 11 223
Q ss_pred HHHHHHHHHHHHhcCCcEEEEE-eeCCCcccccccc---c-ccCCCceEEEEecccccccccccccCCCchHHHHHHHHh
Q 046158 322 EETGRRLLKYCQRFNVPFEYNC-IASQNWETIQIED---L-KINPDEVLAVNSLFRFKNLLDETVDVNCPRNSVLKLIRK 396 (542)
Q Consensus 322 eetG~rL~~~A~~~gVpFeF~~-I~~~~~E~l~~~d---L-~i~~~E~LaVN~~~~L~~L~des~~~~sprd~vL~~Ir~ 396 (542)
+..-+--.+..++.|++.+--. =.+.+.-.|..-+ + ++++||+|.--- .-.+.-.|. ...+-=.+..-|-.
T Consensus 178 ~~ll~~~~~lE~~~Gi~l~~vsagnats~~~L~~~~~~~inhlriG~al~~g~-~~~n~~~~~---~e~da~~lesEIie 253 (353)
T COG3457 178 ESLLQGKKKLEASSGIQLKQVSAGNATSLTLLPMGSLPGINHLRIGEALTGGV-TPTNQYIDW---LEQDAMLLESEIIE 253 (353)
T ss_pred HHHHHHHHHHHHhcCceeEEecCCCccchhhhhcccccccccccccceeeccc-ccchhcccc---cccchhhhhhhhhh
Confidence 3333333344566688877422 1112222222111 1 467788876443 222222222 11112223455655
Q ss_pred hCCCEEEEEeecCCCCCCchHH
Q 046158 397 IKPDIFVNSIVNGSYNAPFFVT 418 (542)
Q Consensus 397 L~P~V~v~~e~~~~~nsp~F~~ 418 (542)
++++.=+ ...++-++.+.|+.
T Consensus 254 ~k~k~s~-~ige~f~~~~~f~d 274 (353)
T COG3457 254 VKDKPSY-PIGEGFYRRSGFVD 274 (353)
T ss_pred ccCCCce-eecccccccccccc
Confidence 5555422 12233445555544
No 93
>cd05296 GH4_P_beta_glucosidase Glycoside Hydrolases Family 4; Phospho-beta-glucosidase. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases such as the phospho-beta-glucosidases. Other organisms (such as archaea and Thermotoga maritima ) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. The 6-phospho-beta-glucosidase from Thermotoga maritima hydrolylzes cellobiose 6-phosphate (6P) into glucose-6P and glucose, in an NAD+ and Mn2+ dependent fashion. The Escherichia coli 6-phospho-beta-glucosidase (also called celF) hydrolyzes a variety of phospho-beta-glucosides including cellobiose-6P, salicin-6P, arbutin-6P, and gentobiose-6P. Phospho-beta-glucosidases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein
Probab=20.70 E-value=4.1e+02 Score=29.26 Aligned_cols=52 Identities=23% Similarity=0.333 Sum_probs=38.6
Q ss_pred HHHHHHHhcCCCCCC--eEEEeeecCCCCCCCChHHHHHHHHHHHHHHHhcCCcEEEEEee
Q 046158 287 PMLIQFLSMRTGGPP--RLRITGIELPQPGFRPAERIEETGRRLLKYCQRFNVPFEYNCIA 345 (542)
Q Consensus 287 p~Liq~LA~R~gGPP--~LRITgI~~p~~gf~p~~~leetG~rL~~~A~~~gVpFeF~~I~ 345 (542)
|.||+.|+.+...-+ +|.+--|+. .++++..+.-..++++..|.+++|..-.
T Consensus 14 p~li~~l~~~~~~l~~~ei~L~Did~-------~~rl~~v~~~~~~~~~~~~~~~~v~~t~ 67 (419)
T cd05296 14 PELIEGLIRRYEELPVTELVLVDIDE-------EEKLEIVGALAKRMVKKAGLPIKVHLTT 67 (419)
T ss_pred HHHHHHHHhccccCCCCEEEEecCCh-------HHHHHHHHHHHHHHHHhhCCCeEEEEeC
Confidence 689999998744333 455555541 4788889999999999999998877654
No 94
>PRK10867 signal recognition particle protein; Provisional
Probab=20.54 E-value=6.7e+02 Score=27.91 Aligned_cols=53 Identities=11% Similarity=0.181 Sum_probs=34.3
Q ss_pred HHHHHHHHHHhcCC--HHHHHHHHHHHhhccCC----CC-ChhhHHHHHHHHHHHHhhcc
Q 046158 165 TLLILCAQAVSSND--YRTANELLKQIRQHSSL----TG-DGSQRLAHWFANGLEARMAG 217 (542)
Q Consensus 165 ~LL~~CA~AV~~~d--~~~A~~lL~~I~~~sSp----~G-d~~QRLA~yFaeAL~aRl~g 217 (542)
..|-+--.|.-..| ...|.+++++|++.+.- .+ ++.|.+-.+..+.|...+.+
T Consensus 29 ~~l~ei~~~Ll~aDV~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~el~~~l~~ 88 (433)
T PRK10867 29 EALREVRLALLEADVNLPVVKDFIARVKEKAVGQEVLKSLTPGQQVIKIVNDELVEILGG 88 (433)
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHhhccccccCCcHHHHHHHHHHHHHHHhCC
Confidence 44444444544444 57799999999876432 22 45677888888888877754
No 95
>TIGR02855 spore_yabG sporulation peptidase YabG. Members of this family are the protein YabG, demonstrated for Bacillus subtilis to be an endopeptidase able to release N-terminal peptides from a number of sporulation proteins, including CotT, CotF, and SpoIVA. It appears to be expressed under control of sigma-K.
Probab=20.52 E-value=95 Score=32.54 Aligned_cols=39 Identities=33% Similarity=0.514 Sum_probs=31.0
Q ss_pred HHHHHHHHhhCCCEEEEEeecC------------C-CCCCchHHHHHHHHHH
Q 046158 388 NSVLKLIRKIKPDIFVNSIVNG------------S-YNAPFFVTRFREAIFH 426 (542)
Q Consensus 388 d~vL~~Ir~L~P~V~v~~e~~~------------~-~nsp~F~~RF~EAL~~ 426 (542)
+.+..++.+.+|||+|++-.+| + .||-.|++=.++|-.|
T Consensus 143 ~~i~~Ll~~~~PDIlViTGHD~~~K~~~d~~dl~~YrnSkyFVeaVk~aR~y 194 (283)
T TIGR02855 143 EKVLDLIEEVRPDILVITGHDAYSKNKGNYMDLNAYRHSKYFVETVREARKY 194 (283)
T ss_pred HHHHHHHHHhCCCEEEEeCchhhhcCCCChhhhhhhhhhHHHHHHHHHHHhc
Confidence 5789999999999999986653 1 4678888888877654
No 96
>COG2942 N-acyl-D-glucosamine 2-epimerase [Carbohydrate transport and metabolism]
Probab=20.33 E-value=8.4e+02 Score=26.92 Aligned_cols=88 Identities=22% Similarity=0.215 Sum_probs=59.5
Q ss_pred HHHHHHHHhhhCCcchhhHHHHhHHHHhhhccCC---eeEE-------EEe-----ecccccchHHHHHHHhcCCCCCCe
Q 046158 238 MLKAYKVYLSACPFKKLAIMFTIKMIMKVSEKAS---TLHI-------VDF-----GIRYGFQWPMLIQFLSMRTGGPPR 302 (542)
Q Consensus 238 ~l~Ay~~f~~~~Pf~kfa~~~ANqaIleA~~g~~---~VHI-------IDf-----gI~~G~QWp~Liq~LA~R~gGPP~ 302 (542)
+|.+|..--+ ..|...|.-+|+-+|-+-+.+++ .=|. -+| --+|+|-|..||-.++.|.+
T Consensus 183 ~LA~~e~~~~-~~~~~~A~~ia~l~~~rf~d~~~g~v~E~fd~dW~p~~~frg~~~ePGH~fEW~~Lll~~a~~~~---- 257 (388)
T COG2942 183 MLAAYEATGE-KTWLDRADRIADLIISRFADAESGLVREHFDHDWNPAHGFRGRGIEPGHQFEWAWLLLDIARRRG---- 257 (388)
T ss_pred HHHHHhccCc-hhHHHHHHHHHHHHHHHhhhcccCcHhhhccccCCcCCCcccCCCCCchHHHHHHHHHHHHHHhc----
Confidence 4444444433 45777888888888888775443 1121 122 13577889999999998753
Q ss_pred EEEeeecCCCCCCCChHHHHHHHHHHHHHHHhcCCcEEEEEee
Q 046158 303 LRITGIELPQPGFRPAERIEETGRRLLKYCQRFNVPFEYNCIA 345 (542)
Q Consensus 303 LRITgI~~p~~gf~p~~~leetG~rL~~~A~~~gVpFeF~~I~ 345 (542)
...+-++.++|..-|-..|+.-++..+.
T Consensus 258 ---------------~~~l~~~A~~lf~~a~~~g~d~~~gg~~ 285 (388)
T COG2942 258 ---------------RAWLIEAARRLFDIAVADGWDPERGGAY 285 (388)
T ss_pred ---------------hhHHHHHHHHHHHHHHHhccCcccCeEE
Confidence 2457788899999999999887776554
No 97
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=20.22 E-value=7.9e+02 Score=23.72 Aligned_cols=34 Identities=18% Similarity=0.277 Sum_probs=23.6
Q ss_pred CeeEEEEeecccccchHHHHHHHhcCCCCCCeEEEeeecCC
Q 046158 271 STLHIVDFGIRYGFQWPMLIQFLSMRTGGPPRLRITGIELP 311 (542)
Q Consensus 271 ~~VHIIDfgI~~G~QWp~Liq~LA~R~gGPP~LRITgI~~p 311 (542)
..-.|+|+|-+.|.-...| +.+. |..++||||..
T Consensus 40 ~~~~VLDiGcGtG~~~~~l----a~~~---p~~~v~gVD~s 73 (202)
T PRK00121 40 DAPIHLEIGFGKGEFLVEM----AKAN---PDINFIGIEVH 73 (202)
T ss_pred CCCeEEEEccCCCHHHHHH----HHHC---CCccEEEEEec
Confidence 3457999999999655444 3332 44689999963
No 98
>PRK03646 dadX alanine racemase; Reviewed
Probab=20.22 E-value=1.3e+02 Score=32.26 Aligned_cols=36 Identities=19% Similarity=0.196 Sum_probs=26.0
Q ss_pred CeeEE-EEeecc-cccc---hHHHHHHHhcCCCCCCeEEEeeecC
Q 046158 271 STLHI-VDFGIR-YGFQ---WPMLIQFLSMRTGGPPRLRITGIEL 310 (542)
Q Consensus 271 ~~VHI-IDfgI~-~G~Q---Wp~Liq~LA~R~gGPP~LRITgI~~ 310 (542)
-+||| ||-|++ .|+. ++.+++.+.. .|.|+|+||-.
T Consensus 117 ~~vhLkvDTGM~R~G~~~~e~~~~~~~i~~----~~~l~~~Gi~s 157 (355)
T PRK03646 117 LDIYLKVNSGMNRLGFQPERVQTVWQQLRA----MGNVGEMTLMS 157 (355)
T ss_pred eEEEEEeeCCCCCCCCCHHHHHHHHHHHHh----CCCCEEEEEEc
Confidence 47898 999986 6885 5566666543 35699999954
Done!