BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 046160
(114 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2AJ4|A Chain A, Crystal Structure Of Saccharomyces Cerevisiae
Galactokinase In Complex With Galactose And Mg:amppnp
pdb|2AJ4|B Chain B, Crystal Structure Of Saccharomyces Cerevisiae
Galactokinase In Complex With Galactose And Mg:amppnp
Length = 548
Score = 28.5 bits (62), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 34/73 (46%), Gaps = 3/73 (4%)
Query: 35 GWGFIGSQVTELSVIVGWVRETMGPLFHALHKLKMLRI-LEDEEITGLDISSDSGYAYVC 93
G G S +V + V+ MGP +H + K ++RI + E G++ A VC
Sbjct: 185 GSGLSSSAAFICAVALAVVKANMGPGYH-MSKQNLMRITVVAEHYVGVNNGGMDQAASVC 243
Query: 94 SSKNHPRFYADYK 106
++H Y ++K
Sbjct: 244 GEEDH-ALYVEFK 255
>pdb|3LQ2|A Chain A, E. Coli Pyruvate Dehydrogenase Complex E1 E235a Mutant
With Low Tdp Concentration
pdb|3LQ2|B Chain B, E. Coli Pyruvate Dehydrogenase Complex E1 E235a Mutant
With Low Tdp Concentration
pdb|3LQ4|A Chain A, E. Coli Pyruvate Dehydrogenase Complex E1 E235a Mutant
With High Tdp Concentration
pdb|3LQ4|B Chain B, E. Coli Pyruvate Dehydrogenase Complex E1 E235a Mutant
With High Tdp Concentration
Length = 886
Score = 26.2 bits (56), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 22/96 (22%), Positives = 39/96 (40%), Gaps = 8/96 (8%)
Query: 22 NFDDPLEATRLHGGWGFIGSQVTELSVIVGWVRETMGPLFHALHKLKMLRILEDEEIT-- 79
NF + LE L + Q E+S + +VR L + K +++ I+ DE T
Sbjct: 468 NFTEKLELPSLQDFGALLEEQSKEISTTIAFVRALNVMLKNKSIKDRLVPIIADEARTFG 527
Query: 80 ------GLDISSDSGYAYVCSSKNHPRFYADYKRVQ 109
+ I S +G Y + +Y + ++ Q
Sbjct: 528 MEGLFRQIGIYSPNGQQYTPQDREQVAYYKEDEKGQ 563
>pdb|3LPL|A Chain A, E. Coli Pyruvate Dehydrogenase Complex E1 Component E571a
Mutant
pdb|3LPL|B Chain B, E. Coli Pyruvate Dehydrogenase Complex E1 Component E571a
Mutant
Length = 886
Score = 26.2 bits (56), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 22/96 (22%), Positives = 39/96 (40%), Gaps = 8/96 (8%)
Query: 22 NFDDPLEATRLHGGWGFIGSQVTELSVIVGWVRETMGPLFHALHKLKMLRILEDEEIT-- 79
NF + LE L + Q E+S + +VR L + K +++ I+ DE T
Sbjct: 468 NFTEKLELPSLQDFGALLEEQSKEISTTIAFVRALNVMLKNKSIKDRLVPIIADEARTFG 527
Query: 80 ------GLDISSDSGYAYVCSSKNHPRFYADYKRVQ 109
+ I S +G Y + +Y + ++ Q
Sbjct: 528 MEGLFRQIGIYSPNGQQYTPQDREQVAYYKEDEKGQ 563
>pdb|2QTA|A Chain A, E. Coli Pyruvate Dehydrogenase E1 Component E401k Mutant
With Thiamin Diphosphate
pdb|2QTA|B Chain B, E. Coli Pyruvate Dehydrogenase E1 Component E401k Mutant
With Thiamin Diphosphate
pdb|2QTC|A Chain A, E. Coli Pyruvate Dehydrogenase E1 Component E401k Mutant
With Phosphonolactylthiamin Diphosphate
pdb|2QTC|B Chain B, E. Coli Pyruvate Dehydrogenase E1 Component E401k Mutant
With Phosphonolactylthiamin Diphosphate
Length = 886
Score = 26.2 bits (56), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 22/96 (22%), Positives = 39/96 (40%), Gaps = 8/96 (8%)
Query: 22 NFDDPLEATRLHGGWGFIGSQVTELSVIVGWVRETMGPLFHALHKLKMLRILEDEEIT-- 79
NF + LE L + Q E+S + +VR L + K +++ I+ DE T
Sbjct: 468 NFTEKLELPSLQDFGALLEEQSKEISTTIAFVRALNVMLKNKSIKDRLVPIIADEARTFG 527
Query: 80 ------GLDISSDSGYAYVCSSKNHPRFYADYKRVQ 109
+ I S +G Y + +Y + ++ Q
Sbjct: 528 MEGLFRQIGIYSPNGQQYTPQDREQVAYYKEDEKGQ 563
>pdb|1L8A|A Chain A, E. Coli Pyruvate Dehydrogenase
pdb|1L8A|B Chain B, E. Coli Pyruvate Dehydrogenase
pdb|1RP7|A Chain A, E. Coli Pyruvate Dehydrogenase Inhibitor Complex
pdb|1RP7|B Chain B, E. Coli Pyruvate Dehydrogenase Inhibitor Complex
pdb|2G25|A Chain A, E. Coli Pyruvate Dehydrogenase Phosphonolactylthiamin
Diphosphate Complex
pdb|2G25|B Chain B, E. Coli Pyruvate Dehydrogenase Phosphonolactylthiamin
Diphosphate Complex
pdb|2G28|A Chain A, E. Coli Pyruvate Dehydrogenase H407a Variant
Phosphonolactylthiamin Diphosphate Complex
pdb|2G28|B Chain B, E. Coli Pyruvate Dehydrogenase H407a Variant
Phosphonolactylthiamin Diphosphate Complex
pdb|2G67|A Chain A, E. Coli Pyruvate Dehydrogenase E1 Component (Apoenzyme)
pdb|2G67|B Chain B, E. Coli Pyruvate Dehydrogenase E1 Component (Apoenzyme)
pdb|2IEA|A Chain A, E. Coli Pyruvate Dehydrogenase
pdb|2IEA|B Chain B, E. Coli Pyruvate Dehydrogenase
Length = 886
Score = 26.2 bits (56), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 22/96 (22%), Positives = 39/96 (40%), Gaps = 8/96 (8%)
Query: 22 NFDDPLEATRLHGGWGFIGSQVTELSVIVGWVRETMGPLFHALHKLKMLRILEDEEIT-- 79
NF + LE L + Q E+S + +VR L + K +++ I+ DE T
Sbjct: 468 NFTEKLELPSLQDFGALLEEQSKEISTTIAFVRALNVMLKNKSIKDRLVPIIADEARTFG 527
Query: 80 ------GLDISSDSGYAYVCSSKNHPRFYADYKRVQ 109
+ I S +G Y + +Y + ++ Q
Sbjct: 528 MEGLFRQIGIYSPNGQQYTPQDREQVAYYKEDEKGQ 563
>pdb|2BDE|A Chain A, Crystal Structure Of The Cytosolic Imp-Gmp Specific
5'-Nucleotidase (Lpg0095) From Legionella Pneumophila,
Northeast Structural Genomics Target Lgr1
Length = 470
Score = 26.2 bits (56), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 13/42 (30%), Positives = 22/42 (52%)
Query: 47 SVIVGWVRETMGPLFHALHKLKMLRILEDEEITGLDISSDSG 88
S++ V+E + FH ++K + D+ I GL I S +G
Sbjct: 38 SLVYDLVKERLAESFHYPEEIKKFKFNFDDAIRGLVIDSKNG 79
>pdb|4G63|A Chain A, Crystal Structure Of Cytosolic Imp-Gmp Specific
5'-Nucleotidase (Lpg0095) In Complex With Phosphate
Ions From Legionella Pneumophila, Northeast Structural
Genomics Consortium Target Lgr1
Length = 470
Score = 25.8 bits (55), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 13/42 (30%), Positives = 22/42 (52%)
Query: 47 SVIVGWVRETMGPLFHALHKLKMLRILEDEEITGLDISSDSG 88
S++ V+E + FH ++K + D+ I GL I S +G
Sbjct: 38 SLVYDLVKERLAESFHYPEEIKKFKFNFDDAIRGLVIDSKNG 79
>pdb|4AFR|A Chain A, The Structure Of Metacaspase 2 (C213a Mutant) From T.
Brucei
pdb|4AFV|A Chain A, The Structure Of Metacaspase 2 From T. Brucei Determined
In The Presence Of Calcium Chloride
Length = 367
Score = 25.8 bits (55), Expect = 6.9, Method: Composition-based stats.
Identities = 16/55 (29%), Positives = 24/55 (43%), Gaps = 6/55 (10%)
Query: 64 LHKLKMLRILEDEEITGLDISSDSG------YAYVCSSKNHPRFYADYKRVQENN 112
+HKL R+ E +T + + SG + YVCS KR++E N
Sbjct: 212 IHKLLFSRLPEKVRLTAVFDCAHSGSIMDLPFTYVCSGGEQASGTPHMKRIREGN 266
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.141 0.444
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,519,106
Number of Sequences: 62578
Number of extensions: 124008
Number of successful extensions: 265
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 260
Number of HSP's gapped (non-prelim): 16
length of query: 114
length of database: 14,973,337
effective HSP length: 77
effective length of query: 37
effective length of database: 10,154,831
effective search space: 375728747
effective search space used: 375728747
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 45 (21.9 bits)