Query 046160
Match_columns 114
No_of_seqs 168 out of 1127
Neff 6.0
Searched_HMMs 46136
Date Fri Mar 29 09:17:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046160.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/046160hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0004 AmtB Ammonia permease 100.0 3.5E-29 7.7E-34 205.3 8.4 96 1-96 284-407 (409)
2 KOG0682 Ammonia permease [Inor 100.0 9.3E-29 2E-33 205.9 7.1 98 1-98 315-449 (500)
3 TIGR03644 marine_trans_1 proba 99.9 2.6E-27 5.6E-32 194.7 8.3 93 1-93 297-403 (404)
4 PRK10666 ammonium transporter; 99.9 1.6E-26 3.5E-31 191.2 8.0 93 1-93 307-428 (428)
5 TIGR00836 amt ammonium transpo 99.9 1.9E-26 4E-31 189.5 8.0 91 1-91 283-403 (403)
6 PF00909 Ammonium_transp: Ammo 99.9 4E-26 8.7E-31 186.4 5.9 91 1-91 278-399 (399)
7 KOG3796 Ammonium transporter R 93.4 0.068 1.5E-06 44.7 2.9 76 1-77 302-422 (442)
8 PF11085 YqhR: Conserved membr 74.1 14 0.0003 27.8 6.0 67 2-69 25-97 (173)
9 KOG1440 CDP-diacylglycerol syn 69.7 7 0.00015 33.2 4.0 62 12-77 350-416 (432)
10 PF15192 TMEM213: TMEM213 fami 58.6 18 0.00039 23.8 3.5 31 46-76 48-78 (82)
11 TIGR03818 MotA1 flagellar moto 57.3 25 0.00055 28.0 4.9 56 3-72 175-231 (282)
12 PRK06926 flagellar motor prote 53.3 23 0.0005 28.1 4.1 73 3-91 161-240 (271)
13 PF01102 Glycophorin_A: Glycop 49.7 9.8 0.00021 26.9 1.3 20 2-21 70-91 (122)
14 COG1291 MotA Flagellar motor c 49.6 57 0.0012 26.1 5.7 49 3-65 157-205 (266)
15 PLN02594 phosphatidate cytidyl 49.2 23 0.00051 29.2 3.6 42 3-44 241-287 (342)
16 PF04226 Transgly_assoc: Trans 48.5 54 0.0012 19.2 4.5 39 1-49 1-39 (48)
17 PRK12482 flagellar motor prote 46.9 48 0.001 26.6 5.0 60 3-77 175-234 (287)
18 PRK09110 flagellar motor prote 45.2 48 0.001 26.5 4.7 59 3-77 175-234 (283)
19 PRK01030 tetrahydromethanopter 42.7 54 0.0012 26.3 4.6 39 39-77 90-128 (264)
20 PF06024 DUF912: Nucleopolyhed 41.5 16 0.00036 24.6 1.4 35 41-75 58-92 (101)
21 PRK11375 allantoin permease; P 38.8 35 0.00075 28.9 3.2 48 33-80 420-484 (484)
22 KOG3415 Putative Rab5-interact 38.6 54 0.0012 23.3 3.6 16 39-54 47-62 (129)
23 PRK06433 NADH dehydrogenase su 37.9 42 0.00091 22.2 2.9 32 36-67 46-77 (88)
24 PF12297 EVC2_like: Ellis van 35.9 59 0.0013 27.8 4.0 48 23-76 53-100 (429)
25 PRK06743 flagellar motor prote 35.7 1.1E+02 0.0024 24.1 5.4 59 3-77 153-211 (254)
26 PF05552 TM_helix: Conserved T 35.7 25 0.00053 20.7 1.4 21 7-27 32-52 (53)
27 PF14163 SieB: Superinfection 34.2 1.3E+02 0.0028 21.2 5.1 52 5-66 7-58 (151)
28 PRK08456 flagellar motor prote 30.8 1.4E+02 0.003 23.3 5.2 53 37-89 176-233 (257)
29 PF04211 MtrC: Tetrahydrometha 29.9 92 0.002 24.9 4.0 35 43-77 101-135 (262)
30 PF00916 Sulfate_transp: Sulfa 29.7 51 0.0011 25.0 2.6 52 35-86 142-193 (280)
31 TIGR00659 conserved hypothetic 28.9 2E+02 0.0042 22.4 5.7 23 6-28 152-175 (226)
32 PF04172 LrgB: LrgB-like famil 28.7 1.8E+02 0.004 22.3 5.5 16 13-28 150-165 (215)
33 PRK13454 F0F1 ATP synthase sub 28.1 48 0.001 24.4 2.1 19 49-67 33-51 (181)
34 KOG2678 Predicted membrane pro 27.6 80 0.0017 24.9 3.3 25 43-67 219-243 (244)
35 PRK10457 hypothetical protein; 26.1 1.2E+02 0.0027 19.7 3.6 10 2-11 34-43 (82)
36 PRK12660 putative monovalent c 24.3 2.3E+02 0.005 19.4 4.9 43 41-83 70-112 (114)
37 PRK14487 cbb3-type cytochrome 24.1 1.5E+02 0.0033 23.0 4.3 52 43-95 13-68 (217)
38 MTH00213 ND6 NADH dehydrogenas 23.6 2.1E+02 0.0046 22.5 4.9 31 37-67 42-72 (239)
39 COG4858 Uncharacterized membra 23.5 2.4E+02 0.0052 21.9 5.1 49 2-57 132-180 (226)
40 COG4161 ArtP ABC-type arginine 23.0 59 0.0013 25.1 1.7 24 13-36 121-144 (242)
41 COG2993 CcoO Cbb3-type cytochr 22.5 2.2E+02 0.0047 22.2 4.8 64 43-107 14-81 (227)
42 PHA01815 hypothetical protein 21.5 1.3E+02 0.0028 18.1 2.7 20 43-62 4-23 (55)
43 PF09187 DUF1950: Domain of un 21.3 78 0.0017 22.3 1.9 47 45-91 34-80 (119)
44 PF11151 DUF2929: Protein of u 20.5 93 0.002 18.9 2.0 23 48-70 5-27 (57)
45 TIGR00328 flhB flagellar biosy 20.5 4.4E+02 0.0095 21.6 6.5 43 35-77 171-220 (347)
No 1
>COG0004 AmtB Ammonia permease [Inorganic ion transport and metabolism]
Probab=99.96 E-value=3.5e-29 Score=205.26 Aligned_cols=96 Identities=26% Similarity=0.291 Sum_probs=89.8
Q ss_pred CeecchhHHHHHHHHH-HHHHhCCCCccccccccc---------------------------CchhHHHHHHHHHHHHHH
Q 046160 1 MVRPYFEPWVLIGLNI-LAIKLNFDDPLEATRLHG---------------------------GWGFIGSQVTELSVIVGW 52 (114)
Q Consensus 1 ~iIG~i~g~~~~~~~~-~~~~~~iDD~lda~~vHg---------------------------~~~ql~~Ql~g~~~i~~w 52 (114)
++||+++|++|+++.+ +++|+|+|||+|+|+||| +++|++.|++|++++.+|
T Consensus 284 ~iiGii~g~i~~~a~~~lk~~l~~DD~ld~f~vHGvgGi~G~i~~GiFa~~~~~~~~G~~~~~~~~l~~Q~~~v~~~~~~ 363 (409)
T COG0004 284 LIIGLIAGVICYFAVKLLKKKLGVDDALDVFGVHGVGGIVGAILTGIFAAPAVGGGGGLFYGGGVQLGVQLLGVLVTIVY 363 (409)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCcccceeccchhhHHHHHHHHHhcCccccccCccccccHHHHHHHHHHHHHHHHH
Confidence 4789999999999887 667799999999999999 248999999999999999
Q ss_pred HHHHHHHHHHHHhhhccccCChHHHhcccchhhcccccccCCCC
Q 046160 53 VRETMGPLFHALHKLKMLRILEDEEITGLDISSDSGYAYVCSSK 96 (114)
Q Consensus 53 s~~~t~ii~~~l~~~~~LRv~~e~E~~GLD~~~hge~ay~~~~~ 96 (114)
++++|+++++++|++.+||||+|||++|||.+||||+||++.+.
T Consensus 364 ~~v~t~ii~~vl~~~~gLRvs~eeE~~GlD~~~Hge~aY~~~~~ 407 (409)
T COG0004 364 AFVVTFIILKVLKLIIGLRVSEEEELEGLDISEHGESAYSEEEA 407 (409)
T ss_pred HHHHHHHHHHHHHhccCCCCCHHHHhhCCChHHhcccccccccc
Confidence 99999999999999999999999999999999999999998664
No 2
>KOG0682 consensus Ammonia permease [Inorganic ion transport and metabolism]
Probab=99.95 E-value=9.3e-29 Score=205.87 Aligned_cols=98 Identities=29% Similarity=0.432 Sum_probs=93.4
Q ss_pred CeecchhHHHHHHHHHHHHHhCCCCccccccccc------------------------------------CchhHHHHHH
Q 046160 1 MVRPYFEPWVLIGLNILAIKLNFDDPLEATRLHG------------------------------------GWGFIGSQVT 44 (114)
Q Consensus 1 ~iIG~i~g~~~~~~~~~~~~~~iDD~lda~~vHg------------------------------------~~~ql~~Ql~ 44 (114)
+++|+++|++|+++.++++|+|||||||+|++|| +++||++|++
T Consensus 315 iviG~va~~~~~~~~kL~~~lkvDDpl~~f~~Hgv~G~wG~I~~glFa~~~v~~~~~~~~~~~~G~~~~~~~kqLg~Qla 394 (500)
T KOG0682|consen 315 IVIGAVAGLVCNAANKLKERLKVDDPLDAFAVHGVGGIWGLIFTGLFAHDDVAAMDGTTIARISGLWMGHGFKQLGYQLA 394 (500)
T ss_pred HHHhHHHHHHHHHHHHHHHHhcCCcHHHHHHHhccccchhhheeeeeccCccccccCCCccCCCceeecchHHHHHHHHH
Confidence 4789999999999999999999999999999999 4799999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcc-ccCChHHHhcccchhhcccccccCCCCCC
Q 046160 45 ELSVIVGWVRETMGPLFHALHKLKM-LRILEDEEITGLDISSDSGYAYVCSSKNH 98 (114)
Q Consensus 45 g~~~i~~ws~~~t~ii~~~l~~~~~-LRv~~e~E~~GLD~~~hge~ay~~~~~~~ 98 (114)
+++++.+|++++|++++++++|+++ ||||+|+|+.|+|..||||.+|+..+.++
T Consensus 395 ~i~ai~~ws~~~t~iilf~l~kip~~LRvs~e~E~~G~D~~~hGe~ay~~~~~~~ 449 (500)
T KOG0682|consen 395 GILAIAAWSAVVTFIILFLLNKIPLGLRVSEEEEELGMDATEHGEAAYDYHESTR 449 (500)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccceeecCHHHHhcCCCHhhhhhhhcchhhccc
Confidence 9999999999999999999999999 99999999999999999999998877644
No 3
>TIGR03644 marine_trans_1 probable ammonium transporter, marine subtype. Members of this protein family are well conserved subclass of putative ammonimum transporters, belonging to the much broader set of ammonium/methylammonium transporter described by TIGR00836. Species with this transporter tend to be marine bacteria. Partial phylogenetic profiling (PPP) picks a member of this protein family as the single best-scoring protein vs. a reference profile for the marine environment Genome Property for a large number of different query genomes. This finding by PPP suggests that this transporter family represents an important adaptation to the marine environment.
Probab=99.94 E-value=2.6e-27 Score=194.66 Aligned_cols=93 Identities=29% Similarity=0.345 Sum_probs=89.0
Q ss_pred CeecchhHHHHHHHHHHHHHhCCCCccccccccc--------------CchhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 046160 1 MVRPYFEPWVLIGLNILAIKLNFDDPLEATRLHG--------------GWGFIGSQVTELSVIVGWVRETMGPLFHALHK 66 (114)
Q Consensus 1 ~iIG~i~g~~~~~~~~~~~~~~iDD~lda~~vHg--------------~~~ql~~Ql~g~~~i~~ws~~~t~ii~~~l~~ 66 (114)
++||+++|++|+++.++++|+|||||+|++++|| +..|++.|++|++++++|++++|+++++++|+
T Consensus 297 ~iiG~iag~v~~~~~~~~~~~~iDD~~~~~~vHg~~Gi~G~i~~glf~~~~~l~~Ql~g~~~~~~~~~~~s~~~~~il~~ 376 (404)
T TIGR03644 297 TLIGAVGGVIVVFSIVLLDKLKIDDPVGAISVHGVAGIWGTLVVPITNGDASFGAQLIGAATIFAWVFVTSLIVWFILKA 376 (404)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCCCcCchHhhhHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4789999999999999999999999999999999 34799999999999999999999999999999
Q ss_pred hccccCChHHHhcccchhhcccccccC
Q 046160 67 LKMLRILEDEEITGLDISSDSGYAYVC 93 (114)
Q Consensus 67 ~~~LRv~~e~E~~GLD~~~hge~ay~~ 93 (114)
+.+||+++|+|..|+|.++|||++|++
T Consensus 377 ~~~lRv~~e~E~~GlD~~~hg~~ay~e 403 (404)
T TIGR03644 377 TMGIRVSEEEEYEGLDIAECGMEAYPE 403 (404)
T ss_pred cccccCCHHHHHcCCCHHHhCcccCCC
Confidence 999999999999999999999999975
No 4
>PRK10666 ammonium transporter; Provisional
Probab=99.93 E-value=1.6e-26 Score=191.16 Aligned_cols=93 Identities=22% Similarity=0.232 Sum_probs=85.3
Q ss_pred CeecchhHHHHHHHHH-HHHHhCCCCccccccccc------------------C----------chhHHHHHHHHHHHHH
Q 046160 1 MVRPYFEPWVLIGLNI-LAIKLNFDDPLEATRLHG------------------G----------WGFIGSQVTELSVIVG 51 (114)
Q Consensus 1 ~iIG~i~g~~~~~~~~-~~~~~~iDD~lda~~vHg------------------~----------~~ql~~Ql~g~~~i~~ 51 (114)
++||+++|++|+++.+ +++|+|||||+|+++||| + +.|++.|++|++++++
T Consensus 307 ~iiG~vag~v~~~~~~~l~~~~~iDD~~~a~~vHgv~Gi~G~l~~glfa~~~~~~~~~~~g~~~~~ql~~Ql~g~~~~~~ 386 (428)
T PRK10666 307 LIIGVVAGLAGLWGVTMLKRWLRVDDPCDVFGVHGVCGIVGCILTGIFAASSLGGVGYAEGVTMGHQVLVQLESIAITIV 386 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCCcCccHhhhHhHHHHHHHHHHhhchhccCccccCccccHHHHHHHHHHHHHHHH
Confidence 4789999999988765 555699999999999999 0 2699999999999999
Q ss_pred HHHHHHHHHHHHHhhhccccCChHHHhcccchhhcccccccC
Q 046160 52 WVRETMGPLFHALHKLKMLRILEDEEITGLDISSDSGYAYVC 93 (114)
Q Consensus 52 ws~~~t~ii~~~l~~~~~LRv~~e~E~~GLD~~~hge~ay~~ 93 (114)
|++++|+++++++|++.+||+++|+|+.|+|.+||||++|++
T Consensus 387 ~~~~~t~ii~~il~~~~~lRvs~e~E~~GlD~~~hg~~ay~~ 428 (428)
T PRK10666 387 WSGVVAFIGYKLADLTVGLRVPEEQEREGLDVNSHGENAYNA 428 (428)
T ss_pred HHHHHHHHHHHHHHhcccCcCCHHHHHhCCChhHhCccccCC
Confidence 999999999999999999999999999999999999999964
No 5
>TIGR00836 amt ammonium transporter. The mechanism of energy coupling, if any, to methyl-NH2 or NH3 uptake by the AmtB protein of E. coli is not entirely clear. NH4+ uniport driven by the pmf, energy independent NH3 facilitation, and NH4+/K+ antiport have been proposed as possible transport mechanisms. In Corynebacterium glutamicum and Arabidopsis thaliana, uptake via the Amt1 homologues of AmtB has been reported to be driven by the pmf.
Probab=99.93 E-value=1.9e-26 Score=189.52 Aligned_cols=91 Identities=29% Similarity=0.414 Sum_probs=85.8
Q ss_pred CeecchhHHHHHHHHH-HHHHhCCCCccccccccc-----------------------------CchhHHHHHHHHHHHH
Q 046160 1 MVRPYFEPWVLIGLNI-LAIKLNFDDPLEATRLHG-----------------------------GWGFIGSQVTELSVIV 50 (114)
Q Consensus 1 ~iIG~i~g~~~~~~~~-~~~~~~iDD~lda~~vHg-----------------------------~~~ql~~Ql~g~~~i~ 50 (114)
++||+++|++|++..+ +++|+|||||+|++++|| ++.|+++|++|+++++
T Consensus 283 ~viG~iag~~~~~~~~~l~~~~~iDD~~~~~~vHg~~Gi~G~i~~glfa~~~~~~~~~g~~~~~~~~~l~~Ql~g~~~~~ 362 (403)
T TIGR00836 283 IIIGLVAGVLCYLAVSKLKKKLKIDDPLDAFAVHGVGGIWGLIATGLFAAPKVGGVGTGGLLGGNGKQLGVQLIGIAAII 362 (403)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCCcccchhhhhhHHHHHHHHHHhcccccccccCCccccCcHHHHHHHHHHHHHHH
Confidence 4789999999988886 888999999999999999 1279999999999999
Q ss_pred HHHHHHHHHHHHHHhhhccccCChHHHhcccchhhcccccc
Q 046160 51 GWVRETMGPLFHALHKLKMLRILEDEEITGLDISSDSGYAY 91 (114)
Q Consensus 51 ~ws~~~t~ii~~~l~~~~~LRv~~e~E~~GLD~~~hge~ay 91 (114)
+|++++|+++++++|++.+||+++|+|+.|+|.++|||++|
T Consensus 363 ~~s~~~~~ii~~il~~~~~lRv~~e~E~~GlD~~~hg~~ay 403 (403)
T TIGR00836 363 AWAFVVTFIILKILDKTIGLRVSEEEEKIGLDLAEHGEFAY 403 (403)
T ss_pred HHHHHHHHHHHHHHHhcccccCCHHHHHhCCChhhhCcccC
Confidence 99999999999999999999999999999999999999998
No 6
>PF00909 Ammonium_transp: Ammonium Transporter Family; InterPro: IPR024041 This ammonium transporter domain consists of a duplication of 2 structural repeats of five helices each plus one extra C-terminal helix. It has been described as a channel that spans the membrane 11 times [].; PDB: 3B9Z_A 3B9Y_A 3B9W_A 3BHS_A 2B2H_A 2B2J_A 2B2F_A 2B2I_A 2NPG_A 2NUU_E ....
Probab=99.92 E-value=4e-26 Score=186.37 Aligned_cols=91 Identities=29% Similarity=0.375 Sum_probs=79.3
Q ss_pred CeecchhHHHHHHHHH-HHHHhCCCCccccccccc------------------------------CchhHHHHHHHHHHH
Q 046160 1 MVRPYFEPWVLIGLNI-LAIKLNFDDPLEATRLHG------------------------------GWGFIGSQVTELSVI 49 (114)
Q Consensus 1 ~iIG~i~g~~~~~~~~-~~~~~~iDD~lda~~vHg------------------------------~~~ql~~Ql~g~~~i 49 (114)
++||+++|.+|+++.+ +++|+|||||+|++++|| +++|++.|++|++++
T Consensus 278 ~~iG~iag~i~~~~~~~l~~~~~iDD~~~~~~vHg~~Gi~G~i~~glfa~~~~~~~~~~~~~~~~~~~~l~~Ql~g~~~~ 357 (399)
T PF00909_consen 278 LLIGAIAGLISYFGVSWLLKRLKIDDPVGAFAVHGVGGIWGTILTGLFASPEVNYSDGYGGLFYGNGRQLGIQLLGIVVI 357 (399)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTS-HTTGHHHHCHHHHHHHHHHHHHHCCCHHCSS-SSTTHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhhhHhhhhhhheecccceeEeccccceEeeeeccHHHHHHHHHHHhccccccccccccccCCchhHHHHHHHHHHHH
Confidence 3689999999988886 899999999999999999 136899999999999
Q ss_pred HHHHHHHHHHHHHHHhhhccccCChHHHhcccchhhcccccc
Q 046160 50 VGWVRETMGPLFHALHKLKMLRILEDEEITGLDISSDSGYAY 91 (114)
Q Consensus 50 ~~ws~~~t~ii~~~l~~~~~LRv~~e~E~~GLD~~~hge~ay 91 (114)
++|++++|+++++++|++.+||+++|+|+.|+|.++|||+||
T Consensus 358 ~~~~~~~s~i~~~~l~~~~~LRv~~~~E~~GlD~~~hg~~aY 399 (399)
T PF00909_consen 358 LAWSFVVSYIIFKILKKFGGLRVSEEDERVGLDLSEHGEEAY 399 (399)
T ss_dssp HHHHHHHHHHHHHHHHHHT-SB--HHHHHH-HHHHHHS--SB
T ss_pred HHHHHHHHHHHHHHHHhccccCCCHHHHhhCCCHHHhCcCcC
Confidence 999999999999999999999999999999999999999998
No 7
>KOG3796 consensus Ammonium transporter RHBG [Intracellular trafficking, secretion, and vesicular transport; General function prediction only]
Probab=93.43 E-value=0.068 Score=44.69 Aligned_cols=76 Identities=24% Similarity=0.058 Sum_probs=57.4
Q ss_pred CeecchhHHHHHHHHH-----HHHHhCCCCccccccccc----------------------------------------C
Q 046160 1 MVRPYFEPWVLIGLNI-----LAIKLNFDDPLEATRLHG----------------------------------------G 35 (114)
Q Consensus 1 ~iIG~i~g~~~~~~~~-----~~~~~~iDD~lda~~vHg----------------------------------------~ 35 (114)
++||+++|.++....+ +.++++|-|..++=-.|| .
T Consensus 302 miiG~iAG~vSvlG~kyltp~l~~~l~i~dtcgv~nlhgmpg~l~~~~~i~~a~~~t~e~yg~~l~~ifp~~~gng~~~~ 381 (442)
T KOG3796|consen 302 MIIGLIAGLVSVLGYKYLTPFLERKLGIHDTCGVHNLHGMPGLLGGIASIVFAVLATPESYGKGLYHIFPMIGGNGHGMA 381 (442)
T ss_pred HHHHHHHHHHhhccceeechhhcccccccccccccccccchHHHHHHHHHHHHhhcchhhcccccccccceecCCCccch
Confidence 4789999999855443 345799999999999999 1
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCChHHH
Q 046160 36 WGFIGSQVTELSVIVGWVRETMGPLFHALHKLKMLRILEDEE 77 (114)
Q Consensus 36 ~~ql~~Ql~g~~~i~~ws~~~t~ii~~~l~~~~~LRv~~e~E 77 (114)
..|-..|+.|+.++++-+.+..++.-.++ |+.-++-++|+|
T Consensus 382 ~sQa~~Ql~gl~~~l~~A~~gGlLtGllL-kl~~w~qp~d~~ 422 (442)
T KOG3796|consen 382 TSQALYQLFGLLVTLVIALVGGLLTGLLL-KLKIWDQPSDDE 422 (442)
T ss_pred hHHHHHHHHHHHHHHHHHHHhhhhhhhee-eccccCCCChhh
Confidence 36889999999999887776666654444 456677777766
No 8
>PF11085 YqhR: Conserved membrane protein YqhR; InterPro: IPR024563 This family of proteins is conserved in the Bacillaceae family of the Firmicutes. Their function is not known.
Probab=74.14 E-value=14 Score=27.79 Aligned_cols=67 Identities=18% Similarity=0.167 Sum_probs=44.0
Q ss_pred eecchhHHHHHHHHHHHHHhCCCCc-----ccccccccCc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 046160 2 VRPYFEPWVLIGLNILAIKLNFDDP-----LEATRLHGGW-GFIGSQVTELSVIVGWVRETMGPLFHALHKLKM 69 (114)
Q Consensus 2 iIG~i~g~~~~~~~~~~~~~~iDD~-----lda~~vHg~~-~ql~~Ql~g~~~i~~ws~~~t~ii~~~l~~~~~ 69 (114)
.+|+.||++--+...+...++.--. ++-|..| +| ....-|++|++++.+.|.+.+++...+++|+.+
T Consensus 25 ~iGf~gGliWs~v~yl~y~f~FT~v~P~~ll~Pf~~g-~wk~t~~G~~igi~~~gv~Si~aAllY~~~l~k~~g 97 (173)
T PF11085_consen 25 EIGFFGGLIWSLVRYLAYFFHFTEVGPNFLLEPFALG-DWKNTWLGNLIGIVFIGVFSIVAALLYYALLKKFKG 97 (173)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccccccChhhhhhhcc-chhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 4678888776555555555443211 1112222 23 455679999999999999999999988888643
No 9
>KOG1440 consensus CDP-diacylglycerol synthase [Lipid transport and metabolism]
Probab=69.71 E-value=7 Score=33.18 Aligned_cols=62 Identities=13% Similarity=0.117 Sum_probs=43.5
Q ss_pred HHHHHHHHHhCCCCcccccccccCc-hhHHHHHHHHHHHHHHHHHHHHHHH----HHHhhhccccCChHHH
Q 046160 12 IGLNILAIKLNFDDPLEATRLHGGW-GFIGSQVTELSVIVGWVRETMGPLF----HALHKLKMLRILEDEE 77 (114)
Q Consensus 12 ~~~~~~~~~~~iDD~lda~~vHg~~-~ql~~Ql~g~~~i~~ws~~~t~ii~----~~l~~~~~LRv~~e~E 77 (114)
++++.+|+-+||-|-=|.+|=|||. ..+=.|++ ..+.+++.+-|++-. ++++.+ +|.++||.
T Consensus 350 FfASgfKRafKiKDFG~~IPGHGGI~DR~DCQ~l--ma~Fay~Yi~SFI~~~~~s~ll~qi--~~l~~~qq 416 (432)
T KOG1440|consen 350 FFASGFKRAFKIKDFGDSIPGHGGITDRMDCQIL--MATFAYVYIQSFIRLPGVSKLLDQI--LTLTPEQQ 416 (432)
T ss_pred HHHHHhHHhhcCCcccccCCCCCCcchhhHHHHH--HHHHHHHHHHHHhccCCHHHHHHHH--HhCCHHHH
Confidence 6777889999999999999999974 45556763 445566667666654 555555 44555554
No 10
>PF15192 TMEM213: TMEM213 family
Probab=58.64 E-value=18 Score=23.82 Aligned_cols=31 Identities=23% Similarity=0.307 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhccccCChHH
Q 046160 46 LSVIVGWVRETMGPLFHALHKLKMLRILEDE 76 (114)
Q Consensus 46 ~~~i~~ws~~~t~ii~~~l~~~~~LRv~~e~ 76 (114)
+.+.+.||.-.--+|+.-++|++.|+-++..
T Consensus 48 IAAAVGWSLwFLTLILLCvdKlmKLtPdepK 78 (82)
T PF15192_consen 48 IAAAVGWSLWFLTLILLCVDKLMKLTPDEPK 78 (82)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHhccCCCCcc
Confidence 5667799998888888899999988876653
No 11
>TIGR03818 MotA1 flagellar motor stator protein MotA. This model represents one family of MotA proteins which are often not identified by the "transporter, MotA/TolQ/ExbB proton channel family" model, pfam01618.
Probab=57.35 E-value=25 Score=28.00 Aligned_cols=56 Identities=11% Similarity=-0.072 Sum_probs=39.4
Q ss_pred ecchhHHHHHHHHHHHHHhCCC-CcccccccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccC
Q 046160 3 RPYFEPWVLIGLNILAIKLNFD-DPLEATRLHGGWGFIGSQVTELSVIVGWVRETMGPLFHALHKLKMLRI 72 (114)
Q Consensus 3 IG~i~g~~~~~~~~~~~~~~iD-D~lda~~vHg~~~ql~~Ql~g~~~i~~ws~~~t~ii~~~l~~~~~LRv 72 (114)
+|++|+++-... .+. ++| || ..+|..+..+++..+|...+++++|..+-.=..-|.
T Consensus 175 ~GiiGtvlGLI~--~l~--~l~~dp----------~~lG~~iA~Alv~TlyGv~lAn~i~~PiA~kl~~~~ 231 (282)
T TIGR03818 175 FGIVAAVLGVVI--TMG--SIDGPP----------EVLGVLIAAALVGTFLGILLAYGFVGPLAAALEQRV 231 (282)
T ss_pred hhHHHHHHHHHH--HHH--hcCCCH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466666655322 232 456 66 788999999999999999999999988764333333
No 12
>PRK06926 flagellar motor protein MotP; Reviewed
Probab=53.25 E-value=23 Score=28.15 Aligned_cols=73 Identities=16% Similarity=0.141 Sum_probs=48.3
Q ss_pred ecchhHHHHHHHHHHHHHhCCCCcccccccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCChHHH-----
Q 046160 3 RPYFEPWVLIGLNILAIKLNFDDPLEATRLHGGWGFIGSQVTELSVIVGWVRETMGPLFHALHKLKMLRILEDEE----- 77 (114)
Q Consensus 3 IG~i~g~~~~~~~~~~~~~~iDD~lda~~vHg~~~ql~~Ql~g~~~i~~ws~~~t~ii~~~l~~~~~LRv~~e~E----- 77 (114)
+|++|+++-... .+. ++||| ..+|..+..++++.+|..++++++|..+-.= ||...++|
T Consensus 161 fGmiGTviGLI~--mL~--~L~dp----------~~IG~~mAvAlvtTlYGv~~Anlif~PiA~k--L~~~~~~e~~~~~ 224 (271)
T PRK06926 161 WGMIGTLVGLVL--MLK--NLNDP----------STLGPNMAIALLTTLYGTLLANLVFLPIAAK--LEEKTEEEVFVKQ 224 (271)
T ss_pred HHHHHHHHHHHH--HHH--hcCCH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHH
Confidence 466666665322 232 45887 6899999999999999999999999887643 33333444
Q ss_pred --hcccchhhcccccc
Q 046160 78 --ITGLDISSDSGYAY 91 (114)
Q Consensus 78 --~~GLD~~~hge~ay 91 (114)
..|+=..+.|+...
T Consensus 225 ~i~eGilai~~G~nP~ 240 (271)
T PRK06926 225 VIIEGVIGVQSGQNPR 240 (271)
T ss_pred HHHHHHHHHhCCCCHH
Confidence 23544455565543
No 13
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=49.65 E-value=9.8 Score=26.94 Aligned_cols=20 Identities=5% Similarity=-0.052 Sum_probs=11.5
Q ss_pred eecchhHHHH--HHHHHHHHHh
Q 046160 2 VRPYFEPWVL--IGLNILAIKL 21 (114)
Q Consensus 2 iIG~i~g~~~--~~~~~~~~~~ 21 (114)
++|+++|++. .++.++.+|+
T Consensus 70 i~gv~aGvIg~Illi~y~irR~ 91 (122)
T PF01102_consen 70 IFGVMAGVIGIILLISYCIRRL 91 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHH
Confidence 5678888777 2233444444
No 14
>COG1291 MotA Flagellar motor component [Cell motility and secretion]
Probab=49.63 E-value=57 Score=26.11 Aligned_cols=49 Identities=18% Similarity=0.019 Sum_probs=37.0
Q ss_pred ecchhHHHHHHHHHHHHHhCCCCcccccccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 046160 3 RPYFEPWVLIGLNILAIKLNFDDPLEATRLHGGWGFIGSQVTELSVIVGWVRETMGPLFHALH 65 (114)
Q Consensus 3 IG~i~g~~~~~~~~~~~~~~iDD~lda~~vHg~~~ql~~Ql~g~~~i~~ws~~~t~ii~~~l~ 65 (114)
+|++|+++..... + -.+||| ..||.-+.++++...|..++++.++..+-
T Consensus 157 ~GivgaV~GlI~~--l--~~l~~p----------~~LG~~iA~Alv~T~~Gi~~ay~~~~P~a 205 (266)
T COG1291 157 FGIVGAVMGLIHA--L--GNLDDP----------AELGALIAAALVGTLYGIFLAYGLFGPLA 205 (266)
T ss_pred hhHHHHHHHHHHH--H--HcCCCH----------HHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 4666666553221 2 257877 79999999999999999999999987664
No 15
>PLN02594 phosphatidate cytidylyltransferase
Probab=49.24 E-value=23 Score=29.23 Aligned_cols=42 Identities=14% Similarity=0.109 Sum_probs=30.1
Q ss_pred ecchhHHHH----HHHHHHHHHhCCCCcccccccccCc-hhHHHHHH
Q 046160 3 RPYFEPWVL----IGLNILAIKLNFDDPLEATRLHGGW-GFIGSQVT 44 (114)
Q Consensus 3 IG~i~g~~~----~~~~~~~~~~~iDD~lda~~vHg~~-~ql~~Ql~ 44 (114)
+|++++++. .+++.+|+.++|-|-=+.+|-|||. ..+=.|++
T Consensus 241 l~l~aSl~a~fGdlfaS~~KR~~~IKDfG~~IPGHGGilDRfDs~l~ 287 (342)
T PLN02594 241 LGLFASIIAPFGGFFASGFKRAFKIKDFGDSIPGHGGITDRMDCQMV 287 (342)
T ss_pred HHHHHHHHHHhhhHHHHHHHHccCCCcccCccCCCccccccccHHHH
Confidence 455555554 5677788899999999999999963 34445544
No 16
>PF04226 Transgly_assoc: Transglycosylase associated protein; InterPro: IPR007341 This bacterial protein is predicted to be an integral membrane protein. Some family members have been annotated as transglycosylase-associated proteins, but no experimental evidence is provided. This family was annotated based on the information in P76011 from SWISSPROT.; GO: 0016021 integral to membrane
Probab=48.54 E-value=54 Score=19.16 Aligned_cols=39 Identities=21% Similarity=0.236 Sum_probs=22.8
Q ss_pred CeecchhHHHHHHHHHHHHHhCCCCcccccccccCchhHHHHHHHHHHH
Q 046160 1 MVRPYFEPWVLIGLNILAIKLNFDDPLEATRLHGGWGFIGSQVTELSVI 49 (114)
Q Consensus 1 ~iIG~i~g~~~~~~~~~~~~~~iDD~lda~~vHg~~~ql~~Ql~g~~~i 49 (114)
+++|++++++-.+.... +.+.++ +.+..+..+++|+++.
T Consensus 1 Ii~GiiGa~vGg~l~~~---lg~~~~-------~~~~~~i~aviGAiil 39 (48)
T PF04226_consen 1 IILGIIGAFVGGWLFGL---LGINGG-------GSWGSFIVAVIGAIIL 39 (48)
T ss_pred CeeehHHHHHHHHHHHH---hcccCC-------chHHHHHHHHHHHHHH
Confidence 57899999988555333 333222 2455666666665543
No 17
>PRK12482 flagellar motor protein MotA; Provisional
Probab=46.87 E-value=48 Score=26.64 Aligned_cols=60 Identities=15% Similarity=-0.079 Sum_probs=41.4
Q ss_pred ecchhHHHHHHHHHHHHHhCCCCcccccccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCChHHH
Q 046160 3 RPYFEPWVLIGLNILAIKLNFDDPLEATRLHGGWGFIGSQVTELSVIVGWVRETMGPLFHALHKLKMLRILEDEE 77 (114)
Q Consensus 3 IG~i~g~~~~~~~~~~~~~~iDD~lda~~vHg~~~ql~~Ql~g~~~i~~ws~~~t~ii~~~l~~~~~LRv~~e~E 77 (114)
+|++|+++-... .+. .+||| ...+|-.+..+++...|...+++++|..+-.= |+...++|
T Consensus 175 ~GiiGtvlGLI~--mL~--~L~d~---------p~~IG~~iAvALvtTfYGv~lAn~i~~PiA~k--L~~~~~~e 234 (287)
T PRK12482 175 FGICAAVLGIII--TMQ--SIDGS---------IAEIGLKVAAALVGTFLGVFICYCLMDPLANA--MEQEIKKE 234 (287)
T ss_pred HHHHHHHHHHHH--HHH--hcCCC---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHH
Confidence 466666665322 232 45662 37889999999999999999999999887633 44444444
No 18
>PRK09110 flagellar motor protein MotA; Validated
Probab=45.23 E-value=48 Score=26.47 Aligned_cols=59 Identities=12% Similarity=-0.040 Sum_probs=39.8
Q ss_pred ecchhHHHHHHHHHHHHHhCCC-CcccccccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCChHHH
Q 046160 3 RPYFEPWVLIGLNILAIKLNFD-DPLEATRLHGGWGFIGSQVTELSVIVGWVRETMGPLFHALHKLKMLRILEDEE 77 (114)
Q Consensus 3 IG~i~g~~~~~~~~~~~~~~iD-D~lda~~vHg~~~ql~~Ql~g~~~i~~ws~~~t~ii~~~l~~~~~LRv~~e~E 77 (114)
+|++|+++-... .+. .+| || ..+|..+..+++...|...+++++|..+-.= ||.-.++|
T Consensus 175 ~GiiGtv~GLI~--~l~--~l~~dp----------~~iG~~iAvAlv~TlyGi~lAn~i~~PiA~k--l~~~~~~e 234 (283)
T PRK09110 175 FGIVAAVLGVVK--TMG--SIDQPP----------AVLGALIGAALVGTFLGILLAYGFVGPLAAR--LEQVVEED 234 (283)
T ss_pred hHHHHHHHHHHH--HHH--hcCCCH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHH
Confidence 466666555322 222 456 66 6788889999999999999999999777633 44444444
No 19
>PRK01030 tetrahydromethanopterin S-methyltransferase subunit C; Provisional
Probab=42.65 E-value=54 Score=26.26 Aligned_cols=39 Identities=10% Similarity=-0.066 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCChHHH
Q 046160 39 IGSQVTELSVIVGWVRETMGPLFHALHKLKMLRILEDEE 77 (114)
Q Consensus 39 l~~Ql~g~~~i~~ws~~~t~ii~~~l~~~~~LRv~~e~E 77 (114)
++..+++-++..+.+.+..+++-++-+++.++++|--++
T Consensus 90 ~~~~~~~PI~~liia~iiG~vvG~lan~vigMkIPiM~~ 128 (264)
T PRK01030 90 LGIVLAGPIVALIIAAIIGAVVGKLANNVVGMKIPIMER 128 (264)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHcccccCCCchHHH
Confidence 333456666667778888888888888888888886554
No 20
>PF06024 DUF912: Nucleopolyhedrovirus protein of unknown function (DUF912); InterPro: IPR009261 This entry is represented by Autographa californica nuclear polyhedrosis virus (AcMNPV), Orf78; it is a family of uncharacterised viral proteins.
Probab=41.47 E-value=16 Score=24.59 Aligned_cols=35 Identities=11% Similarity=0.014 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhccccCChH
Q 046160 41 SQVTELSVIVGWVRETMGPLFHALHKLKMLRILED 75 (114)
Q Consensus 41 ~Ql~g~~~i~~ws~~~t~ii~~~l~~~~~LRv~~e 75 (114)
.|..-++++.+-++++-++++.++-+|.-||=.+.
T Consensus 58 ~~~~~iili~lls~v~IlVily~IyYFVILRer~~ 92 (101)
T PF06024_consen 58 QNNGNIILISLLSFVCILVILYAIYYFVILRERQK 92 (101)
T ss_pred cccccchHHHHHHHHHHHHHHhhheEEEEEecccc
Confidence 44556667777788888888888889888885443
No 21
>PRK11375 allantoin permease; Provisional
Probab=38.82 E-value=35 Score=28.91 Aligned_cols=48 Identities=10% Similarity=0.068 Sum_probs=31.9
Q ss_pred cc-CchhHHHHHHHHHHHHH----------------HHHHHHHHHHHHHhhhccccCChHHHhcc
Q 046160 33 HG-GWGFIGSQVTELSVIVG----------------WVRETMGPLFHALHKLKMLRILEDEEITG 80 (114)
Q Consensus 33 Hg-~~~ql~~Ql~g~~~i~~----------------ws~~~t~ii~~~l~~~~~LRv~~e~E~~G 80 (114)
|| |+.-+..-++|+++... .+++++.+++.++.|..+-|-++|+|..|
T Consensus 420 ~G~N~~A~ia~iiG~~~~~~~~~~~~~~~l~~~~~~~g~iva~~~Y~~l~~~~~~~~~~~~~~~~ 484 (484)
T PRK11375 420 NGFNLTAFSVTLVAVILSLGGKFIPFMEPLSRVSWFVGVIVAFVAYALLKKRTTAEKTGEQKTIG 484 (484)
T ss_pred CcCcHHHHHHHHHHHHHhcchhhHHHHHHHhhhhHHHHHHHHHHHHHHHHhhCCCccccccccCC
Confidence 45 66666666666654443 46777888888888877777777766544
No 22
>KOG3415 consensus Putative Rab5-interacting protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=38.62 E-value=54 Score=23.34 Aligned_cols=16 Identities=31% Similarity=0.108 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHH
Q 046160 39 IGSQVTELSVIVGWVR 54 (114)
Q Consensus 39 l~~Ql~g~~~i~~ws~ 54 (114)
..-|++|++.-++|..
T Consensus 47 W~rQVi~l~lGviwGi 62 (129)
T KOG3415|consen 47 WIRQVIGLILGVIWGI 62 (129)
T ss_pred HHHHHHHHHHHHHHhh
Confidence 4467777777777754
No 23
>PRK06433 NADH dehydrogenase subunit J; Provisional
Probab=37.93 E-value=42 Score=22.24 Aligned_cols=32 Identities=6% Similarity=0.081 Sum_probs=26.8
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 046160 36 WGFIGSQVTELSVIVGWVRETMGPLFHALHKL 67 (114)
Q Consensus 36 ~~ql~~Ql~g~~~i~~ws~~~t~ii~~~l~~~ 67 (114)
+-.++.+.+++.-+.+|++..+.++++.+..+
T Consensus 46 ~~lL~a~fvA~~qi~VYaGai~vLflF~iml~ 77 (88)
T PRK06433 46 YVMLNAEFLAAVQVLVYVGAVLILITFAVMLT 77 (88)
T ss_pred HHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 35667889999999999999999988887764
No 24
>PF12297 EVC2_like: Ellis van Creveld protein 2 like protein; InterPro: IPR022076 This family of proteins is found in eukaryotes. Proteins in this family are typically between 571 and 1310 amino acids in length. There are two conserved sequence motifs: LPA and ELH. EVC2 is implicated in Ellis van Creveld chondrodysplastic dwarfism in humans. Mutations in this protein can give rise to this congenital condition. LIMBIN is a protein which shares around 80% sequence homology with EVC2 and it is implicated in a similar condition in bovine chondrodysplastic dwarfism.
Probab=35.90 E-value=59 Score=27.78 Aligned_cols=48 Identities=13% Similarity=0.008 Sum_probs=35.8
Q ss_pred CCCcccccccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCChHH
Q 046160 23 FDDPLEATRLHGGWGFIGSQVTELSVIVGWVRETMGPLFHALHKLKMLRILEDE 76 (114)
Q Consensus 23 iDD~lda~~vHg~~~ql~~Ql~g~~~i~~ws~~~t~ii~~~l~~~~~LRv~~e~ 76 (114)
+.--.-++|=|| .-.+|.++.++-+++.+++.++++.++..++..+=.
T Consensus 53 ~~e~~~vlpNHG------lhaagFfvaflvslVL~~l~~f~l~r~~~l~~~~l~ 100 (429)
T PF12297_consen 53 VEEKISVLPNHG------LHAAGFFVAFLVSLVLTWLCFFLLARTRCLQGRPLT 100 (429)
T ss_pred ccccceeccCcc------hHHHHHHHHHHHHHHHHHHHHHHHHHHccccccchh
Confidence 334445666665 556678888899999999999999998877666543
No 25
>PRK06743 flagellar motor protein MotP; Reviewed
Probab=35.74 E-value=1.1e+02 Score=24.08 Aligned_cols=59 Identities=8% Similarity=-0.028 Sum_probs=39.0
Q ss_pred ecchhHHHHHHHHHHHHHhCCCCcccccccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCChHHH
Q 046160 3 RPYFEPWVLIGLNILAIKLNFDDPLEATRLHGGWGFIGSQVTELSVIVGWVRETMGPLFHALHKLKMLRILEDEE 77 (114)
Q Consensus 3 IG~i~g~~~~~~~~~~~~~~iDD~lda~~vHg~~~ql~~Ql~g~~~i~~ws~~~t~ii~~~l~~~~~LRv~~e~E 77 (114)
+|++|.++-.... . -.+||| ..++.-+..++++.+|..++++++|..+..= ||...++|
T Consensus 153 lGllGTVlGLI~~--~--~~l~~p----------~~lg~gIa~ALvtT~yGl~~An~~~~Pia~k--L~~~~~~e 211 (254)
T PRK06743 153 WGMIGTLIGLIIM--L--QNLQDT----------SQIGTGMAVAMLTTLYGSVLANMIAIPLAEK--VYRGIEDL 211 (254)
T ss_pred HHHHHHHHHHHHH--h--HccCCH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHH
Confidence 4555555553321 1 256776 5788888899999999999999999776533 34444444
No 26
>PF05552 TM_helix: Conserved TM helix; InterPro: IPR008910 This alignment represents a conserved transmembrane helix as well as some flanking sequence. It is often found in association with a Mechanosensitive (MS) channel IPR006685 from INTERPRO.; PDB: 2VV5_F 2OAU_E.
Probab=35.74 E-value=25 Score=20.70 Aligned_cols=21 Identities=24% Similarity=0.134 Sum_probs=13.3
Q ss_pred hHHHHHHHHHHHHHhCCCCcc
Q 046160 7 EPWVLIGLNILAIKLNFDDPL 27 (114)
Q Consensus 7 ~g~~~~~~~~~~~~~~iDD~l 27 (114)
+-++.-+..+.++|.++|+.+
T Consensus 32 a~~v~~~~~~~l~~~~~d~~l 52 (53)
T PF05552_consen 32 AKFVRKLVRRLLEKRGVDKTL 52 (53)
T ss_dssp HHHHHHHHHHHHHHCTS-HHH
T ss_pred HHHHHHHHHHHHHHcCCcccc
Confidence 334445666777888999865
No 27
>PF14163 SieB: Superinfection exclusion protein B
Probab=34.23 E-value=1.3e+02 Score=21.20 Aligned_cols=52 Identities=15% Similarity=-0.058 Sum_probs=35.0
Q ss_pred chhHHHHHHHHHHHHHhCCCCcccccccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 046160 5 YFEPWVLIGLNILAIKLNFDDPLEATRLHGGWGFIGSQVTELSVIVGWVRETMGPLFHALHK 66 (114)
Q Consensus 5 ~i~g~~~~~~~~~~~~~~iDD~lda~~vHg~~~ql~~Ql~g~~~i~~ws~~~t~ii~~~l~~ 66 (114)
+.+|++-+.-..+++++++|++.. .....+|++.++.-|++.+-++.++.+.
T Consensus 7 i~~~~llf~P~~~~~~l~l~~~~~----------~y~~~i~~~fl~s~s~li~~~~~~~~~~ 58 (151)
T PF14163_consen 7 IFSGLLLFLPESLLEWLNLDKFEI----------KYQPWIGLIFLFSVSYLIAQLLSFIYKE 58 (151)
T ss_pred HHHHHHHHCCHHHHHHhCcchHHH----------hcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555567888899888643 3355667777777777777777776554
No 28
>PRK08456 flagellar motor protein MotA; Validated
Probab=30.79 E-value=1.4e+02 Score=23.33 Aligned_cols=53 Identities=6% Similarity=-0.123 Sum_probs=36.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCChHHH-----hcccchhhcccc
Q 046160 37 GFIGSQVTELSVIVGWVRETMGPLFHALHKLKMLRILEDEE-----ITGLDISSDSGY 89 (114)
Q Consensus 37 ~ql~~Ql~g~~~i~~ws~~~t~ii~~~l~~~~~LRv~~e~E-----~~GLD~~~hge~ 89 (114)
..++--+..++++.+|..++++++|..+..-..-|+.+|+. ..|+-..+.|+.
T Consensus 176 ~~lg~gIa~ALvtT~yGl~vAn~~~~Pia~kl~~~~~~e~~~~~~i~egi~~i~~g~~ 233 (257)
T PRK08456 176 AEMAAGIAGAFTATVTGIMGSYALFGPWGHKLKAKSKDIIKEKTVILEGILGIAEGAN 233 (257)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 45777788889999999999999988877555555444443 235544445543
No 29
>PF04211 MtrC: Tetrahydromethanopterin S-methyltransferase, subunit C ; InterPro: IPR005865 This model describes the N5-methyltetrahydromethanopterin: coenzyme M methyltransferase subunit C in methanogenic archaea. This methyltranferase is a membrane-associated enzyme complex that uses methyl-transfer reaction to drive a sodium-ion pump. Archaea have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This transferase is involved in the transfer of a methyl group from N5-methyltetrahydromethanopterin to coenzyme M. In an accompanying reaction, methane is produced by two-electron reduction of the methyl moiety in methyl-coenzyme M by another enzyme methyl-coenzyme M reductase.; GO: 0030269 tetrahydromethanopterin S-methyltransferase activity, 0015948 methanogenesis, 0016021 integral to membrane
Probab=29.89 E-value=92 Score=24.92 Aligned_cols=35 Identities=9% Similarity=-0.127 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhccccCChHHH
Q 046160 43 VTELSVIVGWVRETMGPLFHALHKLKMLRILEDEE 77 (114)
Q Consensus 43 l~g~~~i~~ws~~~t~ii~~~l~~~~~LRv~~e~E 77 (114)
+++-++..+.+.+..+++-++-+++.+++++--++
T Consensus 101 l~~PI~~~iiA~IiG~vvG~la~~vi~MkIPim~~ 135 (262)
T PF04211_consen 101 LAGPIIALIIAAIIGAVVGLLANKVIGMKIPIMEQ 135 (262)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcccccccCchHHH
Confidence 45666667778888888888888888899886654
No 30
>PF00916 Sulfate_transp: Sulfate transporter family; InterPro: IPR011547 A number of proteins involved in the transport of sulphate across a membrane as well as some yet uncharacterised proteins have been shown [, ] to be evolutionary related. These proteins are: Neurospora crassa sulphate permease II (gene cys-14). Yeast sulphate permeases (genes SUL1 and SUL2). Rat sulphate anion transporter 1 (SAT-1). Mammalian DTDST, a probable sulphate transporter which, in human, is involved in the genetic disease, diastrophic dysplasia (DTD). Sulphate transporters 1, 2 and 3 from the legume Stylosanthes hamata. Human pendrin (gene PDS), which is involved in a number of hearing loss genetic diseases. Human protein DRA (Down-Regulated in Adenoma). Soybean early nodulin 70. Escherichia coli hypothetical protein ychM. Caenorhabditis elegans hypothetical protein F41D9.5. These proteins are highly hydrophobic and seem to contain about 12 transmembrane domains.; GO: 0005215 transporter activity, 0006810 transport, 0055085 transmembrane transport, 0016021 integral to membrane
Probab=29.70 E-value=51 Score=25.02 Aligned_cols=52 Identities=15% Similarity=0.099 Sum_probs=42.0
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCChHHHhcccchhhc
Q 046160 35 GWGFIGSQVTELSVIVGWVRETMGPLFHALHKLKMLRILEDEEITGLDISSD 86 (114)
Q Consensus 35 ~~~ql~~Ql~g~~~i~~ws~~~t~ii~~~l~~~~~LRv~~e~E~~GLD~~~h 86 (114)
++..+..++..++.+.+-+++-+....+.+.+..+-|++.++|..++-.+.-
T Consensus 142 ~~~~~~~~~~~a~~ia~v~~~~s~~~~~~~~~~~~~~~d~n~El~a~G~aNi 193 (280)
T PF00916_consen 142 SWSLILDLLPTALAIAIVGFIESLLIAKSIAKKTGYRIDPNQELIALGLANI 193 (280)
T ss_pred ccccccccchhHHHHHHHHHHHHHHhhhhhcccccccCCcHHHHHHhhhccc
Confidence 4566666666777788888888999999999999999999999988766543
No 31
>TIGR00659 conserved hypothetical protein TIGR00659. Members of this small but broadly distibuted (Gram-positive, Gram-negative, and Archaeal) family appear to have multiple transmembrane segments. The function is unknown. A homolog, LrgB of Staphylococcus aureus, in the same small superfamily but in an outgroup to this subfamily, is regulated by LytSR and is suggested to act as a murein hydrolase. Of the three paralogous proteins in B. subtilis, one is a full length member of this family, one lacks the C-terminal 60 residues and has an additional 128 N-terminal residues but branches within the family in a phylogenetic tree, and one is closely related to LrgB and part of the outgroup.
Probab=28.90 E-value=2e+02 Score=22.43 Aligned_cols=23 Identities=0% Similarity=-0.061 Sum_probs=15.6
Q ss_pred hhHHHH-HHHHHHHHHhCCCCccc
Q 046160 6 FEPWVL-IGLNILAIKLNFDDPLE 28 (114)
Q Consensus 6 i~g~~~-~~~~~~~~~~~iDD~ld 28 (114)
++|++- .+...+.+++||+||+.
T Consensus 152 itGi~Ga~~g~~ll~~~~i~~~~A 175 (226)
T TIGR00659 152 LTGLLGTVFGPMVLRYFRVKNEIA 175 (226)
T ss_pred HHHHHHHHHHHHHHHHcCCCcHHH
Confidence 444444 45556788899999954
No 32
>PF04172 LrgB: LrgB-like family ; InterPro: IPR007300 The two products of the lrgAB operon are potential membrane proteins, and LrgA and LrgB are both thought to control murein hydrolase activity and penicillin tolerance [].
Probab=28.70 E-value=1.8e+02 Score=22.28 Aligned_cols=16 Identities=25% Similarity=0.131 Sum_probs=11.9
Q ss_pred HHHHHHHHhCCCCccc
Q 046160 13 GLNILAIKLNFDDPLE 28 (114)
Q Consensus 13 ~~~~~~~~~~iDD~ld 28 (114)
+...+.+++||+||+.
T Consensus 150 ~g~~llk~~~I~~~~A 165 (215)
T PF04172_consen 150 LGPPLLKLLRIKDPVA 165 (215)
T ss_pred hHHHHHhHcccccHHH
Confidence 3456678899999953
No 33
>PRK13454 F0F1 ATP synthase subunit B'; Provisional
Probab=28.14 E-value=48 Score=24.40 Aligned_cols=19 Identities=16% Similarity=0.462 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHhhh
Q 046160 49 IVGWVRETMGPLFHALHKL 67 (114)
Q Consensus 49 i~~ws~~~t~ii~~~l~~~ 67 (114)
.++|.++..++++++++++
T Consensus 33 q~~~~lI~F~iL~~ll~k~ 51 (181)
T PRK13454 33 QIFWLLVTLVAIYFVLTRV 51 (181)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3456666666666666665
No 34
>KOG2678 consensus Predicted membrane protein [Function unknown]
Probab=27.57 E-value=80 Score=24.93 Aligned_cols=25 Identities=16% Similarity=0.114 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhh
Q 046160 43 VTELSVIVGWVRETMGPLFHALHKL 67 (114)
Q Consensus 43 l~g~~~i~~ws~~~t~ii~~~l~~~ 67 (114)
.++.+++++.+|+.++++..+.++.
T Consensus 219 ~~~miI~v~~sFVsMiliiqifkkl 243 (244)
T KOG2678|consen 219 YITMIIFVILSFVSMILIIQIFKKL 243 (244)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 4577888889999999998887763
No 35
>PRK10457 hypothetical protein; Provisional
Probab=26.14 E-value=1.2e+02 Score=19.74 Aligned_cols=10 Identities=10% Similarity=-0.177 Sum_probs=5.1
Q ss_pred eecchhHHHH
Q 046160 2 VRPYFEPWVL 11 (114)
Q Consensus 2 iIG~i~g~~~ 11 (114)
++|++++++-
T Consensus 34 ilGiiGA~iG 43 (82)
T PRK10457 34 ILGIVGAVVG 43 (82)
T ss_pred HHHHHHHHHH
Confidence 3455555554
No 36
>PRK12660 putative monovalent cation/H+ antiporter subunit C; Reviewed
Probab=24.27 E-value=2.3e+02 Score=19.43 Aligned_cols=43 Identities=26% Similarity=0.053 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhccccCChHHHhcccch
Q 046160 41 SQVTELSVIVGWVRETMGPLFHALHKLKMLRILEDEEITGLDI 83 (114)
Q Consensus 41 ~Ql~g~~~i~~ws~~~t~ii~~~l~~~~~LRv~~e~E~~GLD~ 83 (114)
-|.+-.-++++=..+..+++....|.....+.++-+|..|.|.
T Consensus 70 pQalvLTaIVIg~av~a~lL~l~~r~~~~~~t~~~~~l~~~~~ 112 (114)
T PRK12660 70 LQAIVLTAIVIGFGMTAFLLVLVYRTYKVTKEDEIEGLRGEDD 112 (114)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchHHHhccCcc
Confidence 5655544444433355555556667667788888888877554
No 37
>PRK14487 cbb3-type cytochrome c oxidase subunit II; Provisional
Probab=24.09 E-value=1.5e+02 Score=23.02 Aligned_cols=52 Identities=17% Similarity=0.086 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhh----hccccCChHHHhcccchhhcccccccCCC
Q 046160 43 VTELSVIVGWVRETMGPLFHALHK----LKMLRILEDEEITGLDISSDSGYAYVCSS 95 (114)
Q Consensus 43 l~g~~~i~~ws~~~t~ii~~~l~~----~~~LRv~~e~E~~GLD~~~hge~ay~~~~ 95 (114)
++++++++.++.++..+-.+.++. ..++|-....|..|-|+.. .|.++.++.
T Consensus 13 ~v~~~~~v~~g~~v~ivp~~~~~~~~~~~~~~~P~t~lel~Gr~iyi-~eGC~~CHs 68 (217)
T PRK14487 13 AVLTLLVVSIGGLVEIVPLFFQKSTTEPVEGVRPYTALELAGRDIYI-REGCYNCHS 68 (217)
T ss_pred HHHHHHHHHHHHHHHhhhhhhhccccCCCCCCCCCCHHHHHHHHHHH-hcChhhccC
Confidence 456666677777766666555443 3468988899999988854 555555544
No 38
>MTH00213 ND6 NADH dehydrogenase subunit 6; Provisional
Probab=23.57 E-value=2.1e+02 Score=22.51 Aligned_cols=31 Identities=10% Similarity=0.142 Sum_probs=26.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 046160 37 GFIGSQVTELSVIVGWVRETMGPLFHALHKL 67 (114)
Q Consensus 37 ~ql~~Ql~g~~~i~~ws~~~t~ii~~~l~~~ 67 (114)
-+++.+.+|++-+++|+..++.++.+++-.+
T Consensus 42 ilLgAeFLA~iQILVYVGAIaVLFLFVIMLL 72 (239)
T MTH00213 42 IVLGMEFLGLIFLIVYVGAICIIFLFVIMMI 72 (239)
T ss_pred HHhccHHHHHHHHHHHHhHHHHHHHHHHHhh
Confidence 4677899999999999999999888876544
No 39
>COG4858 Uncharacterized membrane-bound protein conserved in bacteria [Function unknown]
Probab=23.53 E-value=2.4e+02 Score=21.91 Aligned_cols=49 Identities=8% Similarity=0.328 Sum_probs=30.8
Q ss_pred eecchhHHHHHHHHHHHHHhCCCCcccccccccCchhHHHHHHHHHHHHHHHHHHH
Q 046160 2 VRPYFEPWVLIGLNILAIKLNFDDPLEATRLHGGWGFIGSQVTELSVIVGWVRETM 57 (114)
Q Consensus 2 iIG~i~g~~~~~~~~~~~~~~iDD~lda~~vHg~~~ql~~Ql~g~~~i~~ws~~~t 57 (114)
+.|++||+..+...+...|.+=|....-. .|+.+ ++..+++.+|-+++.
T Consensus 132 l~a~vgGfamy~my~y~yr~~ad~sqr~~----~~K~~---lv~~~sm~lWi~v~i 180 (226)
T COG4858 132 LTAVVGGFAMYIMYYYAYRMRADNSQRPG----TWKYL---LVAVLSMLLWIAVMI 180 (226)
T ss_pred HHHHhhhHHHHHHHHHHHHhhcccccCCc----hHHHH---HHHHHHHHHHHHHHH
Confidence 46888999888888877776655542211 23333 345566667877763
No 40
>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]
Probab=22.99 E-value=59 Score=25.08 Aligned_cols=24 Identities=17% Similarity=0.045 Sum_probs=20.2
Q ss_pred HHHHHHHHhCCCCcccccccccCc
Q 046160 13 GLNILAIKLNFDDPLEATRLHGGW 36 (114)
Q Consensus 13 ~~~~~~~~~~iDD~lda~~vHg~~ 36 (114)
-+..+++|+++.|--|.||.|.++
T Consensus 121 ~a~ellkrlrl~~~adr~plhlsg 144 (242)
T COG4161 121 RAEKLLKRLRLKPYADRYPLHLSG 144 (242)
T ss_pred HHHHHHHHhccccccccCceeccc
Confidence 355788899999999999999943
No 41
>COG2993 CcoO Cbb3-type cytochrome oxidase, cytochrome c subunit [Energy production and conversion]
Probab=22.54 E-value=2.2e+02 Score=22.22 Aligned_cols=64 Identities=19% Similarity=0.167 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh----hhccccCChHHHhcccchhhcccccccCCCCCCCcchhhhhh
Q 046160 43 VTELSVIVGWVRETMGPLFHALH----KLKMLRILEDEEITGLDISSDSGYAYVCSSKNHPRFYADYKR 107 (114)
Q Consensus 43 l~g~~~i~~ws~~~t~ii~~~l~----~~~~LRv~~e~E~~GLD~~~hge~ay~~~~~~~~~~~~~~~~ 107 (114)
+++.++++.++.++-.+-+++.+ ++-++|-=..-|..|=|+.. .|..|.+.++-.-+|++++++
T Consensus 14 ~v~~l~vvsigglveI~PlF~~~~t~e~veg~kPYt~LeLaGR~IYI-reGCy~CHSQmiRpfr~E~eR 81 (227)
T COG2993 14 IVASLLVVSIGGLVEIVPLFFQDNTIEPVEGMKPYTPLELAGRDIYI-REGCYVCHSQMIRPFRAEVER 81 (227)
T ss_pred HHHHHHHHHHhhHHHHhHHHHHhccccccccCCCCCHHHhccceeEe-ecccchhhhhccccchHHHHh
Confidence 45566666666666666555555 45579988889999988754 556666655544455555443
No 42
>PHA01815 hypothetical protein
Probab=21.52 E-value=1.3e+02 Score=18.06 Aligned_cols=20 Identities=0% Similarity=-0.066 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 046160 43 VTELSVIVGWVRETMGPLFH 62 (114)
Q Consensus 43 l~g~~~i~~ws~~~t~ii~~ 62 (114)
++-+.+++..+|..|.+++.
T Consensus 4 ll~i~ivfllaflitliilm 23 (55)
T PHA01815 4 LLNIAIVFLLAFLITLIILM 23 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44455555556655555543
No 43
>PF09187 DUF1950: Domain of unknown function(DUF1950); InterPro: IPR015270 Members of this family are a set of functionally uncharacterised hypothetical eukaryotic proteins []. ; PDB: 2Q3T_A 1VK5_A 3GAN_A.
Probab=21.31 E-value=78 Score=22.29 Aligned_cols=47 Identities=17% Similarity=-0.049 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhccccCChHHHhcccchhhcccccc
Q 046160 45 ELSVIVGWVRETMGPLFHALHKLKMLRILEDEEITGLDISSDSGYAY 91 (114)
Q Consensus 45 g~~~i~~ws~~~t~ii~~~l~~~~~LRv~~e~E~~GLD~~~hge~ay 91 (114)
|-.+==+|.=-.-|+--.++|..-.+|+..++|..-||...|-..|-
T Consensus 34 ~~SiKqlYgQPLHYLTn~llkqWDq~RiGs~dE~kpLd~IIhp~kAe 80 (119)
T PF09187_consen 34 GRSIKQLYGQPLHYLTNILLKQWDQSRIGSEDEHKPLDAIIHPCKAE 80 (119)
T ss_dssp HHHHHHHHT----HHHHHHHHHHHHTTTT-SS----GGGTS-HHHHH
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHHHhccCCccccCcHHHhcChhhHH
Confidence 33334456666778888999999999999999999999988866553
No 44
>PF11151 DUF2929: Protein of unknown function (DUF2929); InterPro: IPR021324 This family of proteins with unknown function appears to be restricted to Firmicutes.
Probab=20.48 E-value=93 Score=18.92 Aligned_cols=23 Identities=13% Similarity=-0.155 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHhhhccc
Q 046160 48 VIVGWVRETMGPLFHALHKLKML 70 (114)
Q Consensus 48 ~i~~ws~~~t~ii~~~l~~~~~L 70 (114)
+++.|+++.+.++-++...+.+.
T Consensus 5 vt~fWs~il~~vvgyI~ssL~~~ 27 (57)
T PF11151_consen 5 VTFFWSFILGEVVGYIGSSLTGV 27 (57)
T ss_pred ehhHHHHHHHHHHHHHHHHHhCC
Confidence 46788888888888877765443
No 45
>TIGR00328 flhB flagellar biosynthetic protein FlhB. FlhB and its functionally equivalent orthologs, from among a larger superfamily of proteins involved in type III protein export systems, are specifically involved in flagellar protein export. The seed members are restricted and the trusted cutoff is set high such that the proteins gathered by this model play roles specifically related to flagellar structures. Full-length homologs scoring below the trusted cutoff are involved in peptide export but not necessarily in the creation of flagella.
Probab=20.47 E-value=4.4e+02 Score=21.62 Aligned_cols=43 Identities=7% Similarity=-0.014 Sum_probs=28.3
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-------ccccCChHHH
Q 046160 35 GWGFIGSQVTELSVIVGWVRETMGPLFHALHKL-------KMLRILEDEE 77 (114)
Q Consensus 35 ~~~ql~~Ql~g~~~i~~ws~~~t~ii~~~l~~~-------~~LRv~~e~E 77 (114)
+..+....+...+..+++.+...++++-+++.. ..||.|.+|=
T Consensus 171 ~~~~~~~~~~~~~~~l~~~~~~~~~via~~D~~~qr~~~~k~lrMskqEV 220 (347)
T TIGR00328 171 SLVQAITNFLDIAKSLLILVLLLLLVIAVFDYFFQRWQYIKSLKMTKQEV 220 (347)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHH
Confidence 344555556666666677777777777777654 3599998764
Done!