Query 046160
Match_columns 114
No_of_seqs 168 out of 1127
Neff 6.0
Searched_HMMs 29240
Date Mon Mar 25 16:10:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046160.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/046160hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2b2h_A AMT-1, ammonium transpo 100.0 1E-28 3.5E-33 201.6 7.3 98 1-98 273-397 (399)
2 3b9w_A Ammonium transporter fa 99.9 2.9E-22 9.8E-27 163.9 5.4 103 1-107 263-396 (407)
3 3hd6_A Ammonium transporter RH 99.8 4.7E-22 1.6E-26 165.6 5.8 108 1-108 312-465 (490)
4 1u7g_A Probable ammonium trans 99.7 3.4E-17 1.1E-21 133.1 6.1 72 1-72 285-385 (385)
5 1pi7_A VPU protein, U ORF prot 13.7 1.3E+02 0.0046 16.0 2.2 10 46-55 16-25 (36)
6 1vk5_A Expressed protein; stru 12.9 37 0.0013 23.8 -0.3 50 41-90 67-116 (157)
7 1b9u_A Protein (ATP synthase); 12.5 1.7E+02 0.0057 14.6 3.0 18 50-67 7-24 (34)
8 1v54_K IHQ, cytochrome C oxida 11.6 1.5E+02 0.005 17.5 2.1 14 45-58 22-35 (56)
9 2jln_A MHP1; hydantoin, transp 11.4 3.6E+02 0.012 21.5 5.1 35 35-69 408-449 (501)
10 2knc_B Integrin beta-3; transm 9.4 2.3E+02 0.0079 17.3 2.6 24 44-67 15-38 (79)
No 1
>2b2h_A AMT-1, ammonium transporter; membrane protein, transport protein; 1.54A {Archaeoglobus fulgidus} PDB: 2b2f_A 2b2i_A 2b2j_A
Probab=99.95 E-value=1e-28 Score=201.56 Aligned_cols=98 Identities=24% Similarity=0.247 Sum_probs=87.7
Q ss_pred CeecchhHHHHHHHHHHHHHhCCCCccccccccc---------------------------CchhHHHHHHHHHHHHHHH
Q 046160 1 MVRPYFEPWVLIGLNILAIKLNFDDPLEATRLHG---------------------------GWGFIGSQVTELSVIVGWV 53 (114)
Q Consensus 1 ~iIG~i~g~~~~~~~~~~~~~~iDD~lda~~vHg---------------------------~~~ql~~Ql~g~~~i~~ws 53 (114)
++||+++|++|+++..+++|+|||||+|++++|| ++.|++.|++|++++++|+
T Consensus 273 ~iiG~iag~i~~~~~~l~~kl~iDD~l~a~~vHgv~Gi~G~l~~glfa~~~~~g~~Gl~~g~~~ql~~Ql~g~~~~~~~~ 352 (399)
T 2b2h_A 273 IVIGLVAGIVCYLAMDFRIKKKIDESLDAWAIHGIGGLWGSVAVGILANPEVNGYAGLLFGNPQLLVSQLIAVASTTAYA 352 (399)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCCTTCHHHHHHHHHHHHHHHHHHHCCHHHHSCCCGGGTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCCCCceeccchhhHHHHHHHHHHccccccCCCccccCcHHHHHHHHHHHHHHHHHH
Confidence 3789999999988889999999999999999999 1279999999999999999
Q ss_pred HHHHHHHHHHHhhhccccCChHHHhcccchhhcccccccCCCCCC
Q 046160 54 RETMGPLFHALHKLKMLRILEDEEITGLDISSDSGYAYVCSSKNH 98 (114)
Q Consensus 54 ~~~t~ii~~~l~~~~~LRv~~e~E~~GLD~~~hge~ay~~~~~~~ 98 (114)
+++|+++++++|++++||+|+|+|.+|||.+||||++|++....|
T Consensus 353 ~v~~~i~~~il~~~~glRv~~e~E~~GlD~~~hg~~ay~~~~~~~ 397 (399)
T 2b2h_A 353 FLVTLILAKAVDAAVGLRVSSQEEYVGLDLSQHEEVAYTLEHHHH 397 (399)
T ss_dssp HHHHHHHHHHHHHHTCSBCCHHHHHHCHHHHHHCCCSCC------
T ss_pred HHHHHHHHHHHHhcccCCCCHHHHHhCCCHHHhCcccCCcccccc
Confidence 999999999999999999999999999999999999999876643
No 2
>3b9w_A Ammonium transporter family; membrane protein, ammonia transport, rhesus protein, transpo protein; HET: BOG; 1.30A {Nitrosomonas europaea} PDB: 3bhs_A 3b9y_A* 3b9z_A*
Probab=99.85 E-value=2.9e-22 Score=163.89 Aligned_cols=103 Identities=14% Similarity=-0.016 Sum_probs=70.7
Q ss_pred CeecchhHHHHHHHHH-----HHHHhCCCCccccccccc-----C--------chhHHHHHHHHHHHHHHHHHHHHHHHH
Q 046160 1 MVRPYFEPWVLIGLNI-----LAIKLNFDDPLEATRLHG-----G--------WGFIGSQVTELSVIVGWVRETMGPLFH 62 (114)
Q Consensus 1 ~iIG~i~g~~~~~~~~-----~~~~~~iDD~lda~~vHg-----~--------~~ql~~Ql~g~~~i~~ws~~~t~ii~~ 62 (114)
++||+++|++|+++.+ +++|+|||||+|++++|| | ...-..|++|++++++|++++|+++++
T Consensus 263 ~iIG~iaG~i~~~~~~~l~~~l~~~l~iDD~l~a~~vHgv~Gi~G~l~~glfa~~~~~~Ql~g~~~~~~~s~v~~~i~~~ 342 (407)
T 3b9w_A 263 FVIGLLGGAISVVGFVFIQPMLESKAKTIDTCGVHNLHGLPGLLGGFSAILIVPGIAVAQLTGIGITLALALIGGVIAGA 342 (407)
T ss_dssp HHHHHHHHHHHHHHHHTHHHHHHHHSCCCCTTCHHHHTTHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCeecchHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4789999999987775 446789999999999999 1 011126999999999999999999999
Q ss_pred HHhhhccccCChHHHhcc--------cchhhcccccccCC-----CCCCCcchhhhhh
Q 046160 63 ALHKLKMLRILEDEEITG--------LDISSDSGYAYVCS-----SKNHPRFYADYKR 107 (114)
Q Consensus 63 ~l~~~~~LRv~~e~E~~G--------LD~~~hge~ay~~~-----~~~~~~~~~~~~~ 107 (114)
++|+ |+++|+|..| +|.+||||+||++. +.+.+||.+...+
T Consensus 343 il~~----r~~~e~e~~g~~~we~p~ld~~~hg~~ayp~~~~~~~~~~~~r~~~~~~~ 396 (407)
T 3b9w_A 343 LIKL----TGTTKQAYEDSHEFIHLAGPEDEHKAERLVLEAKTEIQGLKNRIDAAVLS 396 (407)
T ss_dssp HHHT----TCCCSSTTCGGGTSSSCCCGGGC---------------------------
T ss_pred HHhC----CCCHHHHcCCcccccCccccHHHhchhhccchhhhhccccccCCChhhhc
Confidence 9998 9999999999 99999999999764 2344555554443
No 3
>3hd6_A Ammonium transporter RH type C; ammonia, channel, rhesus, glycoprotein, membran structural genomics, PSI-2, protein structure initiative; HET: BOG; 2.10A {Homo sapiens}
Probab=99.85 E-value=4.7e-22 Score=165.64 Aligned_cols=108 Identities=13% Similarity=-0.037 Sum_probs=83.9
Q ss_pred CeecchhHHHHHHHHH-----HHHHhCCCCccccccccc----------------------C------------------
Q 046160 1 MVRPYFEPWVLIGLNI-----LAIKLNFDDPLEATRLHG----------------------G------------------ 35 (114)
Q Consensus 1 ~iIG~i~g~~~~~~~~-----~~~~~~iDD~lda~~vHg----------------------~------------------ 35 (114)
++||+++|++|+++.+ +++|+|||||+|++++|| +
T Consensus 312 liIG~iaG~i~~~~~~~l~~~l~~kl~iDD~lgv~~vHGv~Gi~G~l~~glfa~~~~~~~~g~~Gl~~~f~~~~~~gg~~ 391 (490)
T 3hd6_A 312 LIIGFVCGIISTLGFVYLTPFLESRLHIQDTCGINNLHGIPGIIGGIVGAVTAASASLEVYGKEGLVHSFDFQGFNGDWT 391 (490)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCTTCHHHHTHHHHHHHHHHHHHHHHC----------------------CHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHCCCCccccchHHhhHHHHHHHHHHHHHhccccccccccCcceeccccccccCCcc
Confidence 3689999999987764 567899999999999999 1
Q ss_pred -chhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCChHHHhcccchhhcccccccCCCCCCCcchhhhhhh
Q 046160 36 -WGFIGSQVTELSVIVGWVRETMGPLFHALHKLKMLRILEDEEITGLDISSDSGYAYVCSSKNHPRFYADYKRV 108 (114)
Q Consensus 36 -~~ql~~Ql~g~~~i~~ws~~~t~ii~~~l~~~~~LRv~~e~E~~GLD~~~hge~ay~~~~~~~~~~~~~~~~~ 108 (114)
+.|++.|++|++++++|++++|+++++++|+..++|+++|+|..|+|..|+.++.|+....++++.|+.....
T Consensus 392 ~~~ql~~Ql~gv~~~~~~a~v~~~ii~~iLk~~~~lRvs~e~e~~g~d~we~p~~~~~~~~~~~~~~~~~~~~~ 465 (490)
T 3hd6_A 392 ARTQGKFQIYGLLVTLAMALMGGIIVGLILRLPFWGQPSDENCFEDAVYWEMPEGNSTVYIPEDPTFKPSGPSV 465 (490)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTSCCCCTTSTTCGGGTSCCCTTTC-----------------
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCHHHHhCCCceeecCcccccccCCCCcccCCccccc
Confidence 2389999999999999999999999999999999999999999999999999999988777777777665443
No 4
>1u7g_A Probable ammonium transporter; right handed helical bundle, transmembrane helices, ammonia membrane protein, RH protein, transport protein; HET: MSE BOG; 1.40A {Escherichia coli} SCOP: f.44.1.1 PDB: 1u77_A* 1u7c_A* 1xqf_A 1xqe_A 2ns1_A* 2nop_A 2nmr_A 3c1g_A 3c1i_A* 3c1h_A* 2now_A 2npe_A 2npc_A 2npd_A 2npg_A 2npj_A 2nuu_A* 3c1j_A 2npk_A
Probab=99.68 E-value=3.4e-17 Score=133.11 Aligned_cols=72 Identities=17% Similarity=0.141 Sum_probs=66.2
Q ss_pred CeecchhHHHHHHHHH-HHHHhCCCCccccccccc-------------------C---------chhHHHHHHHHHHHHH
Q 046160 1 MVRPYFEPWVLIGLNI-LAIKLNFDDPLEATRLHG-------------------G---------WGFIGSQVTELSVIVG 51 (114)
Q Consensus 1 ~iIG~i~g~~~~~~~~-~~~~~~iDD~lda~~vHg-------------------~---------~~ql~~Ql~g~~~i~~ 51 (114)
++||+++|++|++..+ +++|+|||||+|++++|| + +.|++.|++|++++++
T Consensus 285 ~iiG~iag~i~~~~~~~l~~~l~iDD~l~a~~vHgv~Gi~G~l~~glfa~~~~~g~~~~~G~~~g~ql~~Ql~g~~~~~~ 364 (385)
T 1u7g_A 285 LIIGVVAGLAGLWGVTMLKRLLRVDDPCDVFGVHGVCGIVGCIMTGIFAASSLGGVGFAEGVTMGHQLLVQLESIAITIV 364 (385)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCSCCGGGHHHHHHHHHHHHHHHHHHHTSGGGTCCCCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHHhCCCCCCCCCEeecccccHHHHHHHHHhccccccCccccCCcchhHHHHHHHHHHHHHHH
Confidence 3689999999988887 678999999999999999 1 1599999999999999
Q ss_pred HHHHHHHHHHHHHhhhccccC
Q 046160 52 WVRETMGPLFHALHKLKMLRI 72 (114)
Q Consensus 52 ws~~~t~ii~~~l~~~~~LRv 72 (114)
|++++|+++++++|++++|||
T Consensus 365 ~~~v~~~i~~~il~~~~glRv 385 (385)
T 1u7g_A 365 WSGVVAFIGYKLADLTVGLRV 385 (385)
T ss_dssp HHHHHHHHHHHHHHHHTCSBC
T ss_pred HHHHHHHHHHHHHHHccCCcC
Confidence 999999999999999999997
No 5
>1pi7_A VPU protein, U ORF protein; alpha helix, viral protein; NMR {Human immunodeficiency virus 1} SCOP: j.35.1.1 PDB: 1pi8_A 1pje_A 2gof_A 2goh_A 2jpx_A
Probab=13.69 E-value=1.3e+02 Score=15.98 Aligned_cols=10 Identities=30% Similarity=0.471 Sum_probs=4.8
Q ss_pred HHHHHHHHHH
Q 046160 46 LSVIVGWVRE 55 (114)
Q Consensus 46 ~~~i~~ws~~ 55 (114)
++++++|+++
T Consensus 16 IiaIVVWtiv 25 (36)
T 1pi7_A 16 IIAIVVWSIV 25 (36)
T ss_pred HHHHHHHHHH
Confidence 3444455544
No 6
>1vk5_A Expressed protein; structural genomics, unknown function, protein structur initiative, center for eukaryotic structural genomics, CESG; HET: CPS; 1.60A {Arabidopsis thaliana} SCOP: a.220.1.1 PDB: 2q3t_A* 3gan_A*
Probab=12.92 E-value=37 Score=23.82 Aligned_cols=50 Identities=16% Similarity=-0.073 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhccccCChHHHhcccchhhccccc
Q 046160 41 SQVTELSVIVGWVRETMGPLFHALHKLKMLRILEDEEITGLDISSDSGYA 90 (114)
Q Consensus 41 ~Ql~g~~~i~~ws~~~t~ii~~~l~~~~~LRv~~e~E~~GLD~~~hge~a 90 (114)
||-+|-.+==+|.=-.-|+--.+|++.-.+|+..++|..-||...|-..|
T Consensus 67 W~gL~~SiKQlY~QPLHYLTN~LLkqWDQ~RiGs~dE~kpLd~IIhP~kA 116 (157)
T 1vk5_A 67 WVGLSISMKQLYGQPLHYLTNVLLQRWDQSRFGTDSEEQRLDSIIHPTKA 116 (157)
T ss_dssp HHHHHHHHHHHHCCCCCHHHHHHHHHHHHTTTTCSSCCCCGGGTSCHHHH
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhcCCccccCchhhhccchhh
Confidence 44445555556677778888899999999999999999999998886655
No 7
>1b9u_A Protein (ATP synthase); membrane protein, hydrolase; HET: GMA; NMR {Synthetic} SCOP: j.35.1.1
Probab=12.51 E-value=1.7e+02 Score=14.59 Aligned_cols=18 Identities=6% Similarity=-0.278 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHhhh
Q 046160 50 VGWVRETMGPLFHALHKL 67 (114)
Q Consensus 50 ~~ws~~~t~ii~~~l~~~ 67 (114)
..|..+.-.+++++++|+
T Consensus 7 l~~~~i~Flil~~~l~kf 24 (34)
T 1b9u_A 7 ILGQAIAFVLFVLFCMKY 24 (34)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344444555556666665
No 8
>1v54_K IHQ, cytochrome C oxidase polypeptide VIIB; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: f.23.5.1 PDB: 1oco_K* 1occ_K* 1ocz_K* 1ocr_K* 1v55_K* 2dyr_K* 2dys_K* 2eij_K* 2eik_K* 2eil_K* 2eim_K* 2ein_K* 2occ_K* 2ybb_V* 2zxw_K* 3abk_K* 3abl_K* 3abm_K* 3ag1_K* 3ag2_K* ...
Probab=11.64 E-value=1.5e+02 Score=17.45 Aligned_cols=14 Identities=14% Similarity=0.207 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHH
Q 046160 45 ELSVIVGWVRETMG 58 (114)
Q Consensus 45 g~~~i~~ws~~~t~ 58 (114)
.+.++.+|++++|=
T Consensus 22 a~FC~a~W~y~~TQ 35 (56)
T 1v54_K 22 ATFCVAVWVYMATQ 35 (56)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred hhhhHhhHhhhhee
Confidence 35566678877763
No 9
>2jln_A MHP1; hydantoin, transporter, membrane protein, nucleobase-cation-symport-1 family; 2.85A {Microbacterium liquefaciens} PDB: 2jlo_A* 2x79_A
Probab=11.39 E-value=3.6e+02 Score=21.46 Aligned_cols=35 Identities=11% Similarity=-0.056 Sum_probs=21.9
Q ss_pred CchhHHHHHHHHHHHH-------HHHHHHHHHHHHHHhhhcc
Q 046160 35 GWGFIGSQVTELSVIV-------GWVRETMGPLFHALHKLKM 69 (114)
Q Consensus 35 ~~~ql~~Ql~g~~~i~-------~ws~~~t~ii~~~l~~~~~ 69 (114)
|+.-+..=++|+++.. ..+++++.+++.++.+..+
T Consensus 408 n~~a~~a~~~G~~~~~~~~~~~~~~g~~va~v~Y~~l~~~~~ 449 (501)
T 2jln_A 408 NWVALAVYAVALAVSFLTPDLMFVTGLIAALLLHIPAMRWVA 449 (501)
T ss_dssp CHHHHHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhCc
Confidence 5555555555554332 4567778888888877654
No 10
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=9.43 E-value=2.3e+02 Score=17.32 Aligned_cols=24 Identities=4% Similarity=-0.050 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhh
Q 046160 44 TELSVIVGWVRETMGPLFHALHKL 67 (114)
Q Consensus 44 ~g~~~i~~ws~~~t~ii~~~l~~~ 67 (114)
+|++..++-.+...+++++++..+
T Consensus 15 ~gvi~gilliGllllliwk~~~~i 38 (79)
T 2knc_B 15 LSVMGAILLIGLAALLIWKLLITI 38 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444445555555554433
Done!