RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= 046160
         (114 letters)



>d1vkoa1 c.2.1.3 (A:11-314,A:429-521) Myo-inositol 1-phosphate
           synthase {Caenorhabditis elegans [TaxId: 6239]}
          Length = 397

 Score = 27.9 bits (62), Expect = 0.24
 Identities = 14/53 (26%), Positives = 25/53 (47%), Gaps = 2/53 (3%)

Query: 38  FIGSQVTELSVI-VGWVRETMGPLFHALHKLKMLRILEDEEITGLDISSDSGY 89
           + GS VT+ + + +G+   T   +F     +  +    D  I+G DIS  + Y
Sbjct: 94  YFGS-VTQTATVHLGYDSATQNQIFVPFKDIVPILSPNDLIISGWDISDSNLY 145


>d1u7ga_ f.44.1.1 (A:) Ammonium transporter AmtB {Escherichia coli
           [TaxId: 562]}
          Length = 383

 Score = 25.1 bits (54), Expect = 2.5
 Identities = 12/37 (32%), Positives = 18/37 (48%)

Query: 8   PWVLIGLNILAIKLNFDDPLEATRLHGGWGFIGSQVT 44
              L G+ +L   L  DDP +   +HG  G +G  +T
Sbjct: 291 LAGLWGVTMLKRLLRVDDPCDVFGVHGVCGIVGCIMT 327


>d1f60b_ d.58.12.1 (B:) Guanine nucleotide exchange factor (GEF)
          domain from elongation factor-1 beta {Baker's yeast
          (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 90

 Score = 24.2 bits (53), Expect = 2.7
 Identities = 7/32 (21%), Positives = 18/32 (56%)

Query: 52 WVRETMGPLFHALHKLKMLRILEDEEITGLDI 83
          W      P+   + KL++  ++ED++++  D+
Sbjct: 37 WGAHQFIPIGFGIKKLQINCVVEDDKVSLDDL 68


>d1usub_ d.83.2.1 (B:) Activator of Hsp90 ATPase, Aha1 {Baker's
           yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 142

 Score = 24.4 bits (53), Expect = 2.8
 Identities = 9/55 (16%), Positives = 17/55 (30%), Gaps = 3/55 (5%)

Query: 52  WVRETMGPLFHALHKLKMLRILEDEEITGLDISSDSGYAYVCSSKNHPRFYADYK 106
           W +E        +  ++   + + +      +SS  G   V   K       D K
Sbjct: 8   WAKEYFKQK---IVGVEAGSVKDKKYAKIKSVSSIEGDCEVNQRKGKVISLFDLK 59


>d1b64a_ d.58.12.1 (A:) Guanine nucleotide exchange factor (GEF)
          domain from elongation factor-1 beta {Human (Homo
          sapiens) [TaxId: 9606]}
          Length = 91

 Score = 23.5 bits (51), Expect = 4.7
 Identities = 6/29 (20%), Positives = 18/29 (62%)

Query: 50 VGWVRETMGPLFHALHKLKMLRILEDEEI 78
          + W    + P+ + + KL++  ++ED+++
Sbjct: 36 LVWGSSKLVPVGYGIKKLQIQCVVEDDKV 64


>d1p1ja1 c.2.1.3 (A:9-322,A:438-533) Myo-inositol 1-phosphate
           synthase {Baker's yeast (Saccharomyces cerevisiae)
           [TaxId: 4932]}
          Length = 410

 Score = 24.0 bits (52), Expect = 5.8
 Identities = 10/52 (19%), Positives = 23/52 (44%), Gaps = 1/52 (1%)

Query: 38  FIGSQVTELSVIVGWVRETMGPLFHALHKLKMLRILEDEEITGLDISSDSGY 89
           + GS +T+ S +   +      ++   + L  +    D  ++G DI++   Y
Sbjct: 97  YFGS-MTQCSTLKLGIDAEGNDVYAPFNSLLPMVSPNDFVVSGWDINNADLY 147


>d1ft9a1 a.4.5.4 (A:134-213) CO-sensing protein CooA, C-terminal
          domain {Rhodospirillum rubrum [TaxId: 1085]}
          Length = 80

 Score = 23.2 bits (50), Expect = 6.1
 Identities = 7/39 (17%), Positives = 17/39 (43%)

Query: 45 ELSVIVGWVRETMGPLFHALHKLKMLRILEDEEITGLDI 83
          E++ ++G  R+T     ++L K   +        T  ++
Sbjct: 35 EIANLIGSSRQTTSTALNSLIKEGYISRQGRGHYTIPNL 73


>d1wpua1 d.275.1.1 (A:5-148) Hut operon positive regulatory
          protein HutP {Bacillus subtilis [TaxId: 1423]}
          Length = 144

 Score = 23.3 bits (50), Expect = 6.8
 Identities = 6/24 (25%), Positives = 11/24 (45%)

Query: 69 MLRILEDEEITGLDISSDSGYAYV 92
          +L + E EE T ++     G+   
Sbjct: 11 LLLLNEAEESTQVEELERDGWKVC 34


>d1u04a2 c.55.3.10 (A:324-770) Argonaute homologue PF0537
           {Pyrococcus furiosus [TaxId: 2261]}
          Length = 447

 Score = 23.7 bits (51), Expect = 7.5
 Identities = 17/86 (19%), Positives = 24/86 (27%), Gaps = 15/86 (17%)

Query: 40  GSQVTELSVIVGWVRETMGPLFHALHKLKMLRIL-------EDEEITGLDISSDS---GY 89
           G  V         V +          KL   +IL        + E  GL   S+      
Sbjct: 272 GESVDMNEFFKEMVDK----FKEFNIKLDNKKILLLRDGRITNNEEEGLKYISEMFDIEV 327

Query: 90  AYVCSSKNH-PRFYADYKRVQENNHD 114
             +   KNH  R +A+ K        
Sbjct: 328 VTMDVIKNHPVRAFANMKMYFNLGGA 353


>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B
          chain {Pseudomonas putida [TaxId: 303]}
          Length = 346

 Score = 23.5 bits (49), Expect = 9.2
 Identities = 5/32 (15%), Positives = 12/32 (37%)

Query: 67 LKMLRILEDEEITGLDISSDSGYAYVCSSKNH 98
           K   + +        ++ D+  AYV ++   
Sbjct: 31 YKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYG 62


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.322    0.141    0.444 

Gapped
Lambda     K      H
   0.267   0.0364    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 455,585
Number of extensions: 19120
Number of successful extensions: 89
Number of sequences better than 10.0: 1
Number of HSP's gapped: 89
Number of HSP's successfully gapped: 16
Length of query: 114
Length of database: 2,407,596
Length adjustment: 72
Effective length of query: 42
Effective length of database: 1,419,036
Effective search space: 59599512
Effective search space used: 59599512
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 47 (22.9 bits)