BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 046164
(202 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3JRN|A Chain A, Crystal Structure Of Tir Domain From Arabidopsis Thaliana
Length = 176
Score = 68.9 bits (167), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 46/141 (32%), Positives = 71/141 (50%), Gaps = 8/141 (5%)
Query: 33 DVFINHRGTDTKRTIAGLLHDHLSRLRLNPFLDSKNMKPGDRLFDKIDTAIKHCKLGVAV 92
DVF++ RG DT+ L+ L R + F D K ++ G R ++ + I+ + V V
Sbjct: 10 DVFLSFRGHDTRHNFISFLYKELVRRSIRTFKDDKELENGQRFSPELKSPIEVSRFAVVV 69
Query: 93 FSPRYCESYFCLHELALIMESRKK----VIPIFYDVKPSQLQVPDNGTCSRKELQRFSRA 148
S Y S +CL EL IM+ KK V+PIFY V+P+ ++ G + + + SR
Sbjct: 70 VSENYAASSWCLDELVTIMDFEKKGSITVMPIFYGVEPNHVRW-QTGVLAEQFKKHASRE 128
Query: 149 LEEA--KYTVGLT-FDSINGD 166
E K+ LT F ++GD
Sbjct: 129 DPEKVLKWRQALTNFAQLSGD 149
>pdb|3OZI|A Chain A, Crystal Structure Of The Tir Domain From The Flax Disease
Resistance Protein L6
pdb|3OZI|B Chain B, Crystal Structure Of The Tir Domain From The Flax Disease
Resistance Protein L6
Length = 204
Score = 60.5 bits (145), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 55/103 (53%), Gaps = 5/103 (4%)
Query: 33 DVFINHRGTDTKRTIAGLLHDHLSRLRLNPFLDSKNMKPGDRLFDKIDTAIKHCKLGVAV 92
+VF++ RG DT+ L+ L R +++ F D + G + + AI K+ V +
Sbjct: 37 EVFLSFRGPDTREQFTDFLYQSLRRYKIHTFRDDDELLKGKEIGPNLLRAIDQSKIYVPI 96
Query: 93 FSPRYCESYFCLHELALIM-----ESRKKVIPIFYDVKPSQLQ 130
S Y +S +CL ELA I+ + R+ ++PIFY V PS ++
Sbjct: 97 ISSGYADSKWCLMELAEIVRRQEEDPRRIILPIFYMVDPSDVR 139
>pdb|3H16|A Chain A, Crystal Structure Of A Bacteria Tir Domain, Pdtir From
Paracoccus Denitrificans
pdb|3H16|B Chain B, Crystal Structure Of A Bacteria Tir Domain, Pdtir From
Paracoccus Denitrificans
pdb|3H16|C Chain C, Crystal Structure Of A Bacteria Tir Domain, Pdtir From
Paracoccus Denitrificans
pdb|3H16|D Chain D, Crystal Structure Of A Bacteria Tir Domain, Pdtir From
Paracoccus Denitrificans
Length = 154
Score = 42.7 bits (99), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/103 (24%), Positives = 47/103 (45%), Gaps = 5/103 (4%)
Query: 31 PCDVFINHRGTDTKRTIAGLLHDHLSRLRLNPFLDSKNMKPGDRLFDKIDTAIKHCKLGV 90
P D+FI+H D + L H L + D +++PGD L ID + + G+
Sbjct: 20 PHDIFISHAWEDKADFVEALAH-TLRAAGAEVWYDDFSLRPGDSLRRSIDKGLGSSRFGI 78
Query: 91 AVFSPRYCESYFCLHELALIME----SRKKVIPIFYDVKPSQL 129
V S + + + EL + + R +++PI++ V ++
Sbjct: 79 VVLSTHFFKKEWPQKELDGLFQLESSGRSRILPIWHKVSKDEV 121
>pdb|1FYV|A Chain A, Crystal Structure Of The Tir Domain Of Human Tlr1
Length = 161
Score = 33.5 bits (75), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 46/106 (43%), Gaps = 7/106 (6%)
Query: 34 VFINHRGTDTKRTIAGLLHDHLSRLRLNPFLDSKNMKPGDRLFDKIDTAIKHCKLGVAVF 93
FI++ G D+ LL + L + L +N PG + + I T I+ + V
Sbjct: 15 AFISYSGHDSFWVKNELLPN-LEKEGXQICLHERNFVPGKSIVENIITCIEKSYKSIFVL 73
Query: 94 SPRYCESYFCLHELA-----LIMESRKKVIPIFYDVKPSQLQVPDN 134
SP + +S +C +EL L E +I I + P Q +P +
Sbjct: 74 SPNFVQSEWCHYELYFAHHNLFHEGSNSLILILLEPIP-QYSIPSS 118
>pdb|2V5P|A Chain A, Complex Structure Of Human Igf2r Domains 11-13 Bound To
Igf-Ii
pdb|2V5P|B Chain B, Complex Structure Of Human Igf2r Domains 11-13 Bound To
Igf-Ii
Length = 492
Score = 28.5 bits (62), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 36/80 (45%), Gaps = 5/80 (6%)
Query: 19 PHHQIQLPITRRPCDVFINHRGTDTKRTIAG--LLHDHLSRLRLNPFLDSKNMKPGDRLF 76
P H + P C V I+ D R +AG +L+ + + LN +S D+ F
Sbjct: 193 PMHAVPCPAGAAVCKVPIDGPPIDIGR-VAGPPILNPIANEIYLN--FESSTPCLADKHF 249
Query: 77 DKIDTAIKHCKLGVAVFSPR 96
+ HCK GV++ +P+
Sbjct: 250 NYTSLIAFHCKRGVSMGTPK 269
>pdb|2V5O|A Chain A, Structure Of Human Igf2r Domains 11-14
Length = 627
Score = 28.1 bits (61), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 36/80 (45%), Gaps = 5/80 (6%)
Query: 19 PHHQIQLPITRRPCDVFINHRGTDTKRTIAG--LLHDHLSRLRLNPFLDSKNMKPGDRLF 76
P H + P C V I+ D R +AG +L+ + + LN +S D+ F
Sbjct: 193 PMHAVPCPAGAAVCKVPIDGPPIDIGR-VAGPPILNPIANEIYLN--FESSTPCLADKHF 249
Query: 77 DKIDTAIKHCKLGVAVFSPR 96
+ HCK GV++ +P+
Sbjct: 250 NYTSLIAFHCKRGVSMGTPK 269
>pdb|2V5N|A Chain A, Structure Of Human Igf2r Domains 11-12
Length = 299
Score = 28.1 bits (61), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 35/81 (43%), Gaps = 5/81 (6%)
Query: 18 RPHHQIQLPITRRPCDVFINHRGTDTKRTIAG--LLHDHLSRLRLNPFLDSKNMKPGDRL 75
P H + P C V I+ D R +AG +L+ + + LN +S D+
Sbjct: 192 NPXHAVPCPAGAAVCKVPIDGPPIDIGR-VAGPPILNPIANEIYLN--FESSTPCLADKH 248
Query: 76 FDKIDTAIKHCKLGVAVFSPR 96
F+ HCK GV+ +P+
Sbjct: 249 FNYTSLIAFHCKRGVSXGTPK 269
>pdb|1VP4|A Chain A, Crystal Structure Of A Putative Aminotransferase (Tm1131)
From Thermotoga Maritima Msb8 At 1.82 A Resolution
pdb|1VP4|B Chain B, Crystal Structure Of A Putative Aminotransferase (Tm1131)
From Thermotoga Maritima Msb8 At 1.82 A Resolution
Length = 425
Score = 27.3 bits (59), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 19/36 (52%)
Query: 131 VPDNGTCSRKELQRFSRALEEAKYTVGLTFDSINGD 166
VPD T RKEL ++ + E +Y L + + GD
Sbjct: 52 VPDPETFPRKELAEIAKEIIEKEYHYTLQYSTTEGD 87
>pdb|3IBJ|A Chain A, X-Ray Structure Of Pde2a
pdb|3IBJ|B Chain B, X-Ray Structure Of Pde2a
Length = 691
Score = 26.9 bits (58), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 16/60 (26%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
Query: 16 HHRPHHQIQLPITRRPCDVFINHRGTDTKRTIAGLLH-DHLSRLRLNPFLDSKNMKPGDR 74
+++ HH++ L + CD+ +G T R IA L++ + S+ L + ++ M+ DR
Sbjct: 578 NNKQHHRLLLCLLMTSCDLSDQTKGWKTTRKIAELIYKEFFSQGDLEKAMGNRPMEMMDR 637
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.137 0.417
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,082,846
Number of Sequences: 62578
Number of extensions: 245468
Number of successful extensions: 764
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 756
Number of HSP's gapped (non-prelim): 12
length of query: 202
length of database: 14,973,337
effective HSP length: 94
effective length of query: 108
effective length of database: 9,091,005
effective search space: 981828540
effective search space used: 981828540
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 49 (23.5 bits)