Query 046164
Match_columns 202
No_of_seqs 188 out of 1411
Neff 6.8
Searched_HMMs 29240
Date Mon Mar 25 16:12:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046164.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/046164hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3jrn_A AT1G72930 protein; TIR 100.0 3E-49 1E-53 320.2 8.3 156 27-186 4-174 (176)
2 3ozi_A L6TR; plant TIR domain, 100.0 1.6E-48 5.6E-53 321.6 11.4 157 26-184 30-202 (204)
3 3h16_A TIR protein; bacteria T 100.0 3.8E-31 1.3E-35 209.0 6.7 106 27-133 16-125 (154)
4 3ub2_A TOLL/interleukin-1 rece 99.9 9.8E-27 3.3E-31 182.8 2.2 101 28-130 7-113 (146)
5 1fyx_A TOLL-like receptor 2; b 99.9 1.1E-24 3.8E-29 171.3 1.9 99 29-129 3-110 (149)
6 2js7_A Myeloid differentiation 99.9 4.5E-24 1.5E-28 169.9 5.4 96 29-126 14-117 (160)
7 2j67_A TOLL like receptor 10; 99.9 3.7E-24 1.3E-28 173.3 3.0 96 28-125 32-135 (178)
8 1t3g_A X-linked interleukin-1 99.9 1.8E-23 6.1E-28 166.3 5.5 97 30-126 1-114 (159)
9 3j0a_A TOLL-like receptor 5; m 99.7 1.1E-17 3.8E-22 160.9 8.5 97 29-127 668-775 (844)
10 1eiw_A Hypothetical protein MT 98.5 1.3E-07 4.5E-12 70.6 5.0 72 30-121 3-74 (111)
11 3hyn_A Putative signal transdu 97.8 0.00014 4.9E-09 58.5 9.4 116 32-150 6-145 (189)
12 2f62_A Nucleoside 2-deoxyribos 94.6 0.23 8E-06 38.7 9.3 76 45-120 26-104 (161)
13 2khz_A C-MYC-responsive protei 93.9 0.55 1.9E-05 36.4 10.0 94 23-120 3-109 (165)
14 4fyk_A Deoxyribonucleoside 5'- 92.3 0.49 1.7E-05 36.6 7.4 86 33-122 4-102 (152)
15 3ehd_A Uncharacterized conserv 89.5 1.4 4.9E-05 34.3 7.7 76 45-121 19-104 (162)
16 1s2d_A Purine trans deoxyribos 83.2 3.4 0.00012 32.1 6.8 86 33-121 9-116 (167)
17 3dt5_A Uncharacterized protein 73.0 2.1 7.2E-05 30.8 2.5 56 96-151 36-100 (135)
18 2yvq_A Carbamoyl-phosphate syn 67.2 7.3 0.00025 29.1 4.6 62 34-97 27-106 (143)
19 1f8y_A Nucleoside 2-deoxyribos 64.6 9.3 0.00032 29.2 4.8 76 45-121 18-113 (157)
20 2jug_A TUBC protein; docking d 50.2 11 0.00039 25.1 2.7 39 49-87 8-49 (78)
21 2ql9_B Caspase-7; cysteine pro 45.7 5.2 0.00018 28.0 0.4 28 32-59 20-47 (97)
22 1qtn_B Caspase-8; apoptosis, d 44.7 5.1 0.00017 28.1 0.2 28 32-59 22-49 (95)
23 1v95_A Nuclear receptor coacti 44.5 50 0.0017 24.5 5.8 38 44-83 20-57 (130)
24 1sc3_B Interleukin-1 beta conv 44.2 6.7 0.00023 27.1 0.8 26 34-59 20-45 (88)
25 1wu7_A Histidyl-tRNA synthetas 43.6 67 0.0023 27.9 7.4 57 31-92 332-389 (434)
26 1evl_A Threonyl-tRNA synthetas 42.3 74 0.0025 27.3 7.4 59 30-94 297-356 (401)
27 1pyo_B Caspase-2; apoptosis, c 42.0 6.7 0.00023 27.9 0.5 28 32-59 24-51 (105)
28 2dko_B Caspase-3; low barrier 41.8 6.6 0.00022 27.9 0.4 25 35-59 29-53 (103)
29 1byr_A Protein (endonuclease); 41.1 46 0.0016 23.9 5.2 47 46-93 14-61 (155)
30 1qey_A MNT-C, protein (regulat 40.2 29 0.00098 19.4 2.8 19 166-184 10-28 (31)
31 2xzd_B Caspase-3; hydrolase-pr 35.4 11 0.00036 27.6 0.7 27 33-59 26-52 (118)
32 2efe_B Small GTP-binding prote 33.9 91 0.0031 22.2 5.9 26 71-96 69-95 (181)
33 3rjm_B Caspase-2; caspase-2, c 33.6 11 0.00036 27.6 0.4 28 32-59 25-52 (117)
34 3net_A Histidyl-tRNA synthetas 32.2 73 0.0025 28.2 5.8 62 29-95 369-430 (465)
35 1qe0_A Histidyl-tRNA synthetas 31.1 93 0.0032 26.6 6.2 60 29-94 327-387 (420)
36 1htt_A Histidyl-tRNA synthetas 30.7 1.1E+02 0.0036 26.3 6.6 57 30-91 326-385 (423)
37 1nj1_A PROR, proline-tRNA synt 30.7 56 0.0019 29.3 4.9 43 30-72 313-359 (501)
38 4g85_A Histidine-tRNA ligase, 29.5 1.7E+02 0.0057 26.0 7.8 62 29-94 417-478 (517)
39 2i4l_A Proline-tRNA ligase; al 29.2 39 0.0013 29.9 3.5 49 30-82 364-414 (458)
40 2d00_A V-type ATP synthase sub 28.5 61 0.0021 23.0 3.9 64 53-124 16-79 (109)
41 4g84_A Histidine--tRNA ligase, 28.0 1.7E+02 0.0057 25.3 7.4 62 29-94 364-425 (464)
42 3n75_A LDC, lysine decarboxyla 26.3 1.1E+02 0.0038 28.8 6.3 70 46-127 17-86 (715)
43 1nyr_A Threonyl-tRNA synthetas 25.5 1.9E+02 0.0063 26.6 7.5 60 30-94 544-604 (645)
44 1bax_A M-PMV MA, M-PMV matrix 24.5 39 0.0013 23.8 2.0 19 45-63 9-27 (94)
45 3hjn_A DTMP kinase, thymidylat 24.4 87 0.003 24.0 4.4 32 34-65 1-34 (197)
46 3aon_B V-type sodium ATPase su 24.3 45 0.0016 24.0 2.5 61 54-124 16-76 (115)
47 3lc0_A Histidyl-tRNA synthetas 23.7 2.2E+02 0.0076 25.0 7.4 60 30-94 360-419 (456)
48 4e51_A Histidine--tRNA ligase; 23.6 1.7E+02 0.0059 25.8 6.7 64 30-94 353-416 (467)
49 1qf6_A THRRS, threonyl-tRNA sy 23.3 2.6E+02 0.0091 25.7 8.1 61 30-96 538-599 (642)
50 2fu5_C RAS-related protein RAB 23.0 1.7E+02 0.0057 20.9 5.6 19 80-98 75-93 (183)
51 2j3l_A Prolyl-tRNA synthetase; 22.6 1.6E+02 0.0055 26.5 6.4 62 30-96 469-533 (572)
52 1hc7_A Prolyl-tRNA synthetase; 22.4 63 0.0022 28.8 3.6 44 30-73 286-334 (477)
53 2i4r_A V-type ATP synthase sub 22.1 51 0.0017 23.3 2.3 65 53-124 22-86 (102)
54 2zt5_A Glycyl-tRNA synthetase; 21.6 2.5E+02 0.0085 26.3 7.6 62 30-95 558-620 (693)
55 3reg_A RHO-like small GTPase; 21.2 1.3E+02 0.0046 21.9 4.8 53 78-130 87-140 (194)
56 3c5c_A RAS-like protein 12; GD 20.8 2.2E+02 0.0076 20.6 6.0 19 79-97 85-103 (187)
57 3bpj_A Eukaryotic translation 20.5 1.6E+02 0.0054 19.7 4.5 41 138-183 12-52 (80)
58 3zy2_A Putative GDP-fucose pro 20.4 84 0.0029 27.4 3.8 68 4-90 261-329 (362)
59 1ati_A Glycyl-tRNA synthetase; 20.3 2E+02 0.007 25.6 6.5 59 30-94 397-459 (505)
No 1
>3jrn_A AT1G72930 protein; TIR domain arabidopsis thaliana, plant protein; 2.00A {Arabidopsis thaliana}
Probab=100.00 E-value=3e-49 Score=320.15 Aligned_cols=156 Identities=27% Similarity=0.460 Sum_probs=128.7
Q ss_pred CCCCCccEEEeccccccchhHHHHHHHHHhcCCCeeEecCCCCCCCCcchHHHHHhhhhcceEEEEeCCCCcCChhhHHH
Q 046164 27 ITRRPCDVFINHRGTDTKRTIAGLLHDHLSRLRLNPFLDSKNMKPGDRLFDKIDTAIKHCKLGVAVFSPRYCESYFCLHE 106 (202)
Q Consensus 27 ~~~~~ydVFISy~~~D~r~~fv~~L~~~L~~~Gi~vf~D~~~l~~G~~i~~~i~~aI~~S~i~IvV~S~~y~~S~wc~~E 106 (202)
+..++|||||||+|+|+|.+|++||+.+|+++||++|+|++++.+|+.|.++|.+||++|+++|+|||++|++|.||++|
T Consensus 4 s~~~~yDVFiSfrg~D~r~~Fv~~L~~~L~~~gi~~f~D~~~l~~G~~i~~~l~~aIe~Sri~IvV~S~ny~~S~WCl~E 83 (176)
T 3jrn_A 4 HTATKYDVFLSFRGHDTRHNFISFLYKELVRRSIRTFKDDKELENGQRFSPELKSPIEVSRFAVVVVSENYAASSWCLDE 83 (176)
T ss_dssp ---CCEEEEEEECHHHHTTTHHHHHHHHHHHTTCCEECCCC--------------CCTTEEEEEEEECTTTTTCHHHHHH
T ss_pred CCCCCCeEEEECcCcccChHHHHHHHHHHHHCCCEEEEEcccccCCCchHHHHHHHHHhCCEEEEEecCCcCCChhHHHH
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhc----CceecEEEecCCCCccCCCCCc-----------cchhhhHHHHHHHHHHHHhcCCcccCCCCCHHHHH
Q 046164 107 LALIMESR----KKVIPIFYDVKPSQLQVPDNGT-----------CSRKELQRFSRALEEAKYTVGLTFDSINGDWSEFL 171 (202)
Q Consensus 107 L~~i~~~~----~~ViPVfy~v~p~~vr~~~~~~-----------~~~e~~~~W~~AL~~v~~~~G~~~~~~~~~e~~~i 171 (202)
|++|++|. ++||||||+|+|++||+|+ |. .+++++++|+.||+++++++|+++. .+|+++|
T Consensus 84 L~~i~~~~~~~~~~ViPIfy~V~ps~Vr~q~-g~fg~af~~~~~~~~~~~~~~Wr~AL~~va~~~G~~~~---~~e~~~i 159 (176)
T 3jrn_A 84 LVTIMDFEKKGSITVMPIFYGVEPNHVRWQT-GVLAEQFKKHASREDPEKVLKWRQALTNFAQLSGDCSG---DDDSKLV 159 (176)
T ss_dssp HHHHHHHHHTTSCEEEEEECSSCHHHHHHTC-THHHHHHHHHHTTSCHHHHHHHHHHHHHHTTSCCEECC---SCHHHHH
T ss_pred HHHHHhhhccCCCEEEEEEecCCHHHhhhcc-CcHHHHHHHHHhccCHHHHHHHHHHHHHHhcccceecC---CCHHHHH
Confidence 99999874 5899999999999999998 43 3568899999999999999999984 6799999
Q ss_pred HHHHHHHHHHhhhhc
Q 046164 172 TTATDAVINNLIEVE 186 (202)
Q Consensus 172 ~~Iv~~v~~~L~~~~ 186 (202)
++||++|+++|+..+
T Consensus 160 ~~Iv~~v~~~l~~~~ 174 (176)
T 3jrn_A 160 DKIANEISNKKTIYA 174 (176)
T ss_dssp HHHHHHHHTTCC---
T ss_pred HHHHHHHHHHhcCCC
Confidence 999999999998654
No 2
>3ozi_A L6TR; plant TIR domain, plant protein; 2.30A {Linum usitatissimum}
Probab=100.00 E-value=1.6e-48 Score=321.58 Aligned_cols=157 Identities=24% Similarity=0.457 Sum_probs=144.7
Q ss_pred CCCCCCccEEEeccccccchhHHHHHHHHHhcCCCeeEecCCCCCCCCcchHHHHHhhhhcceEEEEeCCCCcCChhhHH
Q 046164 26 PITRRPCDVFINHRGTDTKRTIAGLLHDHLSRLRLNPFLDSKNMKPGDRLFDKIDTAIKHCKLGVAVFSPRYCESYFCLH 105 (202)
Q Consensus 26 ~~~~~~ydVFISy~~~D~r~~fv~~L~~~L~~~Gi~vf~D~~~l~~G~~i~~~i~~aI~~S~i~IvV~S~~y~~S~wc~~ 105 (202)
..+.++|||||||+|+|+|.+|++||+.+|+++||++|+|++++.+|+.|.++|.+||++|+++|+|||++|++|.||++
T Consensus 30 ~~~~~~yDVFISfrg~D~r~~Fv~~L~~aL~~~GI~~f~D~~el~~G~~I~~~l~~aIe~Sri~IvV~S~nYa~S~WCl~ 109 (204)
T 3ozi_A 30 SFPSVEYEVFLSFRGPDTREQFTDFLYQSLRRYKIHTFRDDDELLKGKEIGPNLLRAIDQSKIYVPIISSGYADSKWCLM 109 (204)
T ss_dssp ----CCCCEEEEECHHHHTTTHHHHHHHHHHHTTCCEEEEETTTCCGGGTTTTHHHHHHHCSEEEEEECTTGGGCHHHHH
T ss_pred CCCCcCCeEEEeccccCCCHHHHHHHHHHHHHCCCcEEEeCCccCCCCchHHHHHHHHHhCcEeeEEEEcccccCcHHHH
Confidence 34789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhc-----CceecEEEecCCCCccCCCCCc-----------cchhhhHHHHHHHHHHHHhcCCcccCCCCCHHH
Q 046164 106 ELALIMESR-----KKVIPIFYDVKPSQLQVPDNGT-----------CSRKELQRFSRALEEAKYTVGLTFDSINGDWSE 169 (202)
Q Consensus 106 EL~~i~~~~-----~~ViPVfy~v~p~~vr~~~~~~-----------~~~e~~~~W~~AL~~v~~~~G~~~~~~~~~e~~ 169 (202)
||++|++|. ++||||||+|+|++||+|+ |. +.++++++|+.||++|++++||++.+ +.+|++
T Consensus 110 EL~~I~e~~~~~~~~~ViPIFY~VdPs~Vr~q~-g~fg~af~~~~~~~~~~~v~~Wr~AL~~va~lsG~~~~~-~~~e~~ 187 (204)
T 3ozi_A 110 ELAEIVRRQEEDPRRIILPIFYMVDPSDVRHQT-GCYKKAFRKHANKFDGQTIQNWKDALKKVGDLKGWHIGK-NDKQGA 187 (204)
T ss_dssp HHHHHHHHHHHCTTSEECCEEESSCHHHHHHTC-TTHHHHHHHHTTTSCHHHHHHHHHHHHHHHTSCBEEECT-TSCHHH
T ss_pred HHHHHHHHHHhcCCeeeEEEEeecCHHHHHhcc-ccHHHHHHHHHHhhCHHHHHHHHHHHHHHhccCceecCC-CCCHHH
Confidence 999999873 5899999999999999998 43 35678999999999999999999986 678999
Q ss_pred HHHHHHHHHHHHhhh
Q 046164 170 FLTTATDAVINNLIE 184 (202)
Q Consensus 170 ~i~~Iv~~v~~~L~~ 184 (202)
+|++||++|+++|..
T Consensus 188 ~i~~Iv~di~~kl~~ 202 (204)
T 3ozi_A 188 IADKVSADIWSHISK 202 (204)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcc
Confidence 999999999999976
No 3
>3h16_A TIR protein; bacteria TIR domain, signaling protein; 2.50A {Paracoccus denitrificans PD1222}
Probab=99.97 E-value=3.8e-31 Score=208.96 Aligned_cols=106 Identities=23% Similarity=0.424 Sum_probs=99.6
Q ss_pred CCCCCccEEEeccccccchhHHHHHHHHHhcCCCeeEecCCCCCCCCcchHHHHHhhhhcceEEEEeCCCCcCChhhHHH
Q 046164 27 ITRRPCDVFINHRGTDTKRTIAGLLHDHLSRLRLNPFLDSKNMKPGDRLFDKIDTAIKHCKLGVAVFSPRYCESYFCLHE 106 (202)
Q Consensus 27 ~~~~~ydVFISy~~~D~r~~fv~~L~~~L~~~Gi~vf~D~~~l~~G~~i~~~i~~aI~~S~i~IvV~S~~y~~S~wc~~E 106 (202)
.+.++|||||||+++| +..|+.+|+.+|+++|+++|+|.+++.+|+.|.+.|.++|++|+++|+|+|++|+.|.||++|
T Consensus 16 ~~~~~~dvFISy~~~D-~~~~~~~L~~~L~~~gi~v~~D~~~l~~G~~~~~~i~~ai~~s~~~i~v~S~~y~~S~wc~~E 94 (154)
T 3h16_A 16 TSAPPHDIFISHAWED-KADFVEALAHTLRAAGAEVWYDDFSLRPGDSLRRSIDKGLGSSRFGIVVLSTHFFKKEWPQKE 94 (154)
T ss_dssp --CCSEEEEEEEEGGG-TTTTHHHHHHHHHHHTCCEECGGGEECTTCCHHHHHHHHHTSEEEEEEEEEHHHHTTCCCHHH
T ss_pred CCCCCceEEEECcccC-hHHHHHHHHHHHHHCCCcEEEcHHhCCCccHHHHHHHHHHHhCcEEEEEeCcchhcChHHHHH
Confidence 3578999999999999 678999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhc----CceecEEEecCCCCccCCC
Q 046164 107 LALIMESR----KKVIPIFYDVKPSQLQVPD 133 (202)
Q Consensus 107 L~~i~~~~----~~ViPVfy~v~p~~vr~~~ 133 (202)
|..++++. ++||||||+++|++||+|.
T Consensus 95 l~~~~~~~~~~~~~iiPV~~~v~p~~v~~~~ 125 (154)
T 3h16_A 95 LDGLFQLESSGRSRILPIWHKVSKDEVASFS 125 (154)
T ss_dssp HHHHTCCCTTSCCCEEEEEESCCTGGGTTTC
T ss_pred HHHHHHHHhcCCCEEEEEEecCCHHHHhhCC
Confidence 99999863 5899999999999999987
No 4
>3ub2_A TOLL/interleukin-1 receptor domain-containing ADA protein; TIR domain, TLRS adaptor, immune system; 2.40A {Homo sapiens} PDB: 3ub3_A 3ub4_A 2y92_A
Probab=99.92 E-value=9.8e-27 Score=182.82 Aligned_cols=101 Identities=18% Similarity=0.305 Sum_probs=76.3
Q ss_pred CCCCccEEEeccccccchhHHHHHHHHHhc--CCCeeEecCCCCCCCCcchHHHHHhhhhcceEEEEeCCCCcCChhhHH
Q 046164 28 TRRPCDVFINHRGTDTKRTIAGLLHDHLSR--LRLNPFLDSKNMKPGDRLFDKIDTAIKHCKLGVAVFSPRYCESYFCLH 105 (202)
Q Consensus 28 ~~~~ydVFISy~~~D~r~~fv~~L~~~L~~--~Gi~vf~D~~~l~~G~~i~~~i~~aI~~S~i~IvV~S~~y~~S~wc~~ 105 (202)
..+.|||||||+++|+ .||.+|..+|++ .|+++|+|++++.||+.+.++|.+||++|+++|+|+|++|++|.||+.
T Consensus 7 ~~k~YDvFISy~~~D~--~~v~~L~~~Le~~~~g~~~~l~~rD~~~G~~i~~~i~~aI~~Sr~~I~VlS~~y~~S~wc~~ 84 (146)
T 3ub2_A 7 WSKDYDVCVCHSEEDL--VAAQDLVSYLEGSTASLRCFLQLRDATPGGAIVSELCQALSSSHCRVLLITPGFLQDPWCKY 84 (146)
T ss_dssp TSSSEEEEEECCGGGH--HHHHHHHHHHHC------------------CCCEEECCTTCCEEEEEEEECHHHHHCHHHHH
T ss_pred CCCcceEEEeCChhhH--HHHHHHHHHHhCcCCCeEEEEECccccccccHHHHHHHHHHhCCEEEEEECcccccCHHHHH
Confidence 3678999999999996 579999999998 599999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhc----CceecEEEecCCCCcc
Q 046164 106 ELALIMESR----KKVIPIFYDVKPSQLQ 130 (202)
Q Consensus 106 EL~~i~~~~----~~ViPVfy~v~p~~vr 130 (202)
|+..|+.+. .+||||||+++++++.
T Consensus 85 El~~al~~~~~~~~~vIpv~~~v~~~~lp 113 (146)
T 3ub2_A 85 QMLQALTEAPGAEGCTIPLLSGLSRAAYP 113 (146)
T ss_dssp HHHHHHHTSSSSSSEEEEEECSCCGGGSC
T ss_pred HHHHHHHHHhhcCCcEEEEEcCCChhhCC
Confidence 999999864 3788999988755543
No 5
>1fyx_A TOLL-like receptor 2; beta-alpha-beta fold, signaling protein; 2.80A {Homo sapiens} SCOP: c.23.2.1 PDB: 1fyw_A 1o77_A
Probab=99.89 E-value=1.1e-24 Score=171.29 Aligned_cols=99 Identities=17% Similarity=0.266 Sum_probs=88.6
Q ss_pred CCCccEEEeccccccchhHHHH-HHHHHhcC--CCeeEecCCCCCCCCcchHHHHHhhhhcceEEEEeCCCCcCChhhHH
Q 046164 29 RRPCDVFINHRGTDTKRTIAGL-LHDHLSRL--RLNPFLDSKNMKPGDRLFDKIDTAIKHCKLGVAVFSPRYCESYFCLH 105 (202)
Q Consensus 29 ~~~ydVFISy~~~D~r~~fv~~-L~~~L~~~--Gi~vf~D~~~l~~G~~i~~~i~~aI~~S~i~IvV~S~~y~~S~wc~~ 105 (202)
++.|||||||+++|. .||.+ |...|++. |+++|+|++++.+|+.+.++|.++|++|+++|+|+||+|++|.||+.
T Consensus 3 ~~~yDvFiSy~~~D~--~~v~~~L~~~Le~~~~g~~~~~~~rd~~~G~~~~~~i~~~i~~Sr~~I~VlS~~y~~S~wc~~ 80 (149)
T 1fyx_A 3 NIXYDAFVSYSERDA--YWVENLMVQELENFNPPFKLXLHKRDFIHGKWIIDNIIDSIEKSHKTVFVLSENFVKSEWXKY 80 (149)
T ss_dssp SCCEEEEEECCGGGH--HHHHTHHHHHHTTSSSCCCEEEHHHHCCSSSCHHHHHHHHHHHEEEEEEEECHHHHHHHTHHH
T ss_pred CccceEEEECCcccH--HHHHHHHHHHHhcCCCCeEEeeccccCCCchhHHHHHHHHHHHcCEEEEEeCcchhccchHHH
Confidence 678999999999996 79996 99999986 99999999999999999999999999999999999999999999999
Q ss_pred HHHHHHH-----hcCceecEEEe-cCCCCc
Q 046164 106 ELALIME-----SRKKVIPIFYD-VKPSQL 129 (202)
Q Consensus 106 EL~~i~~-----~~~~ViPVfy~-v~p~~v 129 (202)
|+..|+. .+.+||||||+ +++..+
T Consensus 81 El~~a~~~~~~~~~~~vIpv~~~~i~~~~~ 110 (149)
T 1fyx_A 81 ELDFSHFRLFDENNDAAILILLEPIEKKAI 110 (149)
T ss_dssp HSCCSCCTTCGGGTTCCEEEESSCCCTTTS
T ss_pred HHHHHHHHHHhcCCCEEEEEEecCCChhhc
Confidence 9999874 34589999995 444333
No 6
>2js7_A Myeloid differentiation primary response protein MYD88; MYD88_human, TIR domain, TOLL like receptor adaptor domain, innate immune signaling; NMR {Homo sapiens} PDB: 2z5v_A
Probab=99.89 E-value=4.5e-24 Score=169.90 Aligned_cols=96 Identities=23% Similarity=0.359 Sum_probs=88.1
Q ss_pred CCCccEEEeccccccchhHHHHHHHHHhcC--CCeeEecCCCCCCCCcchHHHHHhhh-hcceEEEEeCCCCcCChhhHH
Q 046164 29 RRPCDVFINHRGTDTKRTIAGLLHDHLSRL--RLNPFLDSKNMKPGDRLFDKIDTAIK-HCKLGVAVFSPRYCESYFCLH 105 (202)
Q Consensus 29 ~~~ydVFISy~~~D~r~~fv~~L~~~L~~~--Gi~vf~D~~~l~~G~~i~~~i~~aI~-~S~i~IvV~S~~y~~S~wc~~ 105 (202)
.+.|||||||+++| ..||.+|...|++. |+++|+|++++.+|+.+.++|.++|+ +|+++|+|+|++|++|.||+.
T Consensus 14 ~~~yDvFISys~~D--~~fv~~L~~~Le~~~~g~~~~~~~rd~~~G~~i~~~i~~~I~~~Sr~~IvVlS~~y~~S~wc~~ 91 (160)
T 2js7_A 14 PERFDAFICYCPSD--IQFVQEMIRQLEQTNYRLKLCVSDRDVLPGTCVWSIASELIEKRCRRMVVVVSDDYLQSKECDF 91 (160)
T ss_dssp TTCEEEEEECCGGG--HHHHHHHHHHHHTSSSCCCCEESCCSSSSSCSCCCCCGGGHHHHEEEEEEECCHHHHHSHHHHH
T ss_pred CcceEEEEEccccc--HHHHHHHHHHHhcCCCceEEEEeCCCCCCCCcHHHHHHHHHHHhCCEEEEEECcchhcCHHHHH
Confidence 67899999999999 47999999999984 69999999999999999999999999 799999999999999999999
Q ss_pred HHHHHHHhc-----CceecEEEecCC
Q 046164 106 ELALIMESR-----KKVIPIFYDVKP 126 (202)
Q Consensus 106 EL~~i~~~~-----~~ViPVfy~v~p 126 (202)
|+..|+++. ++||||||+.-+
T Consensus 92 El~~a~~~~~~~~~~~vIpV~~~~~~ 117 (160)
T 2js7_A 92 QTKFALSLSPGAHQKRLIPIKYKAMK 117 (160)
T ss_dssp HHHHHHHHCTTHHHHTEEEEESSCCC
T ss_pred HHHHHHHHHHccCCCEEEEEEEcccc
Confidence 999999763 489999997543
No 7
>2j67_A TOLL like receptor 10; TIR, IL-1, TLR10, membrane, innate immunity, immune response, leucine-rich repeat, glycoprotein, transmembrane; 2.20A {Homo sapiens} PDB: 1fyv_A
Probab=99.88 E-value=3.7e-24 Score=173.28 Aligned_cols=96 Identities=18% Similarity=0.263 Sum_probs=86.3
Q ss_pred CCCCccEEEeccccccchhHHHH-HHHHHhc--CCCeeEecCCCCCCCCcchHHHHHhhhhcceEEEEeCCCCcCChhhH
Q 046164 28 TRRPCDVFINHRGTDTKRTIAGL-LHDHLSR--LRLNPFLDSKNMKPGDRLFDKIDTAIKHCKLGVAVFSPRYCESYFCL 104 (202)
Q Consensus 28 ~~~~ydVFISy~~~D~r~~fv~~-L~~~L~~--~Gi~vf~D~~~l~~G~~i~~~i~~aI~~S~i~IvV~S~~y~~S~wc~ 104 (202)
.++.|||||||+++|. .||.. |...|++ .|+++|+|++++.||+.+.++|.++|++|+++|+|+||+|++|.||+
T Consensus 32 ~~~~yDvFISys~~D~--~fv~~~L~~~LE~~~~g~~~~l~~rD~~~G~~i~~~i~~aI~~Sr~~IvVlS~~yl~S~wc~ 109 (178)
T 2j67_A 32 RNVRFHAFISYSEHDS--LWVKNELIPNLEKEDGSILICLYESYFDPGKSISENIVSFIEKSYKSIFVLSPNFVQNEWCH 109 (178)
T ss_dssp CSCCEEEEEECCGGGH--HHHHHTHHHHHTTCC-CCCEEEHHHHCCTTSCHHHHHHHHHHTEEEEEEEECHHHHHHTGGG
T ss_pred CCccceEEEECCCCCH--HHHHHHHHHHHhcccCCeEEEEecccCCCCccHHHHHHHHHHhCCEEEEEecccccccchHH
Confidence 4788999999999995 79975 9999998 89999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHh-----cCceecEEEecC
Q 046164 105 HELALIMES-----RKKVIPIFYDVK 125 (202)
Q Consensus 105 ~EL~~i~~~-----~~~ViPVfy~v~ 125 (202)
.|+..|+.+ +++||||||+.-
T Consensus 110 ~El~~a~~~~~~~~~~~vIpV~~~~i 135 (178)
T 2j67_A 110 YEFYFAHHNLFHENSDHIILILLEPI 135 (178)
T ss_dssp THHHHTTCC-------CEEEEESSCC
T ss_pred HHHHHHHHHHHhcCCCEEEEEEecCC
Confidence 999999853 358999999643
No 8
>1t3g_A X-linked interleukin-1 receptor accessory protein-like 1; TIR, IL-1RAPL, IL-1R, TLR, membrane protein; 2.30A {Homo sapiens}
Probab=99.88 E-value=1.8e-23 Score=166.29 Aligned_cols=97 Identities=16% Similarity=0.285 Sum_probs=86.5
Q ss_pred CCccEEEecccccc---------chhHHHHHHH-HHh-cCCCeeEecCCCCCCCCcchHHHHHhhhhcceEEEEeCCCCc
Q 046164 30 RPCDVFINHRGTDT---------KRTIAGLLHD-HLS-RLRLNPFLDSKNMKPGDRLFDKIDTAIKHCKLGVAVFSPRYC 98 (202)
Q Consensus 30 ~~ydVFISy~~~D~---------r~~fv~~L~~-~L~-~~Gi~vf~D~~~l~~G~~i~~~i~~aI~~S~i~IvV~S~~y~ 98 (202)
+.|||||||+++|. ++.||.+|.. .|+ +.|+++|+|++++.||+.+.++|.++|++|+.+|+|+||+|+
T Consensus 1 k~yDaFISy~~~D~~wv~~~~~~~~~fv~~ll~~~LE~~~g~~l~~~~rD~~~G~~i~~~i~~~I~~Sr~~IvVlS~~y~ 80 (159)
T 1t3g_A 1 KDYDAYLSYTKVDPDQWNQETGEEERFALEILPDMLEKHYGYKLFIPDRDLIPTGTYIEDVARCVDQSKRLIIVMTPNYV 80 (159)
T ss_dssp CCBSEEEECCCCC-------CCSHHHHHHTHHHHHHHHTSCCCEECHHHHCCCCTTHHHHHHHHHHTBSEEEEEECHHHH
T ss_pred CCceEEEeCccccchhhhccchhhHHHHHHHHHHHHcCCCCeEEEEEcccccCccchHHHHHHHHHHcCEEEEEEccchh
Confidence 47999999999996 4689999665 699 799999999999999999999999999999999999999997
Q ss_pred -CChhhHHHHHHHHHh-----cCceecEEEecCC
Q 046164 99 -ESYFCLHELALIMES-----RKKVIPIFYDVKP 126 (202)
Q Consensus 99 -~S~wc~~EL~~i~~~-----~~~ViPVfy~v~p 126 (202)
.|.||..|+..|+.+ +.+||||++...+
T Consensus 81 ~~S~wc~~El~~a~~~~~~~~~~~vI~I~~~~~~ 114 (159)
T 1t3g_A 81 VRRGWSIFELETRLRNMLVTGEIKVILIECSELR 114 (159)
T ss_dssp HTTTTHHHHHSHHHHHHHHTTSSEEEEEECSCCC
T ss_pred hcChHHHHHHHHHHHHHHhcCCCEEEEEEecccc
Confidence 999999999999865 3589999987544
No 9
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.71 E-value=1.1e-17 Score=160.87 Aligned_cols=97 Identities=19% Similarity=0.307 Sum_probs=87.5
Q ss_pred CCCccEEEeccccccchhHH-HHHHHHHhc-----CCCeeEecCCCCCCCCcchHHHHHhhhhcceEEEEeCCCCcCChh
Q 046164 29 RRPCDVFINHRGTDTKRTIA-GLLHDHLSR-----LRLNPFLDSKNMKPGDRLFDKIDTAIKHCKLGVAVFSPRYCESYF 102 (202)
Q Consensus 29 ~~~ydVFISy~~~D~r~~fv-~~L~~~L~~-----~Gi~vf~D~~~l~~G~~i~~~i~~aI~~S~i~IvV~S~~y~~S~w 102 (202)
.+.|||||||+++|. .|| ..|...|+. .|+++|++++|+.||+.+.+.|.++|++||.+|+|+|++|+.|.|
T Consensus 668 ~~~yd~fisy~~~d~--~~v~~~l~~~Le~~~~~~~~~~~~~~~rd~~~G~~~~~~i~~~i~~sr~~i~vls~~~~~s~w 745 (844)
T 3j0a_A 668 MYKYDAYLCFSSKDF--TWVQNALLKHLDTQYSDQNRFNLCFEERDFVPGENRIANIQDAIWNSRKIVCLVSRHFLRDGW 745 (844)
T ss_dssp CCCCSEEEECCSTTH--HHHHHTHHHHHHSTTTTTTCSCEECSSSSCCSSSCHHHHHHHHHHHSSEEEEEECTTHHHHTS
T ss_pred ceeccEEEEeeCCcH--HHHHHHHHHHHhhccccCCceEEEEEccccCCCchHHHHHHHHHHHhCeEEEEeccccccChH
Confidence 789999999999985 577 669999985 589999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHh-----cCceecEEEecCCC
Q 046164 103 CLHELALIMES-----RKKVIPIFYDVKPS 127 (202)
Q Consensus 103 c~~EL~~i~~~-----~~~ViPVfy~v~p~ 127 (202)
|..|+..|+.+ +++||||||+..|.
T Consensus 746 c~~e~~~a~~~~~~~~~~~~i~i~~~~~~~ 775 (844)
T 3j0a_A 746 CLEAFSYAQGRCLSDLNSALIMVVVGSLSQ 775 (844)
T ss_dssp TTHHHHHHHSCCCCSSCTTEEEEESSCCCS
T ss_pred HHHHHHHHHHHHHHhcCCcEEEEEeccCCh
Confidence 99999999743 46899999975553
No 10
>1eiw_A Hypothetical protein MTH538; CHEY-like fold, flavodoxin-like fold, (A/B)5 doubly wound fold, parallel beta sheet; NMR {Methanothermobacterthermautotrophicus} SCOP: c.23.3.1
Probab=98.48 E-value=1.3e-07 Score=70.59 Aligned_cols=72 Identities=11% Similarity=0.063 Sum_probs=57.7
Q ss_pred CCccEEEeccccccchhHHHHHHHHHhcCCCeeEecCCCCCCCCcchHHHHHhhhhcceEEEEeCCCCcCChhhHHHHHH
Q 046164 30 RPCDVFINHRGTDTKRTIAGLLHDHLSRLRLNPFLDSKNMKPGDRLFDKIDTAIKHCKLGVAVFSPRYCESYFCLHELAL 109 (202)
Q Consensus 30 ~~ydVFISy~~~D~r~~fv~~L~~~L~~~Gi~vf~D~~~l~~G~~i~~~i~~aI~~S~i~IvV~S~~y~~S~wc~~EL~~ 109 (202)
.+|.+||||+..|. ...|...|.+.|+... | +.|+.|+++||+.++....|+||..|+..
T Consensus 3 ~~~~lFISh~~~d~----~~~L~~~l~~~~f~~~-~---------------~~I~~~~~vIvL~G~~t~~s~wv~~EI~~ 62 (111)
T 1eiw_A 3 AEIRLYITEGEVED----YRVFLERLEQSGLEWR-P---------------ATPEDADAVIVLAGLWGTRRDEILGAVDL 62 (111)
T ss_dssp CCEEEEECCCCSHH----HHHHHHHHHHHCSCEE-E---------------CCSSSCSEEEEEGGGTTTSHHHHHHHHHH
T ss_pred ceEEEEEecccHhH----HHHHHHHHhCCCCeee-c---------------CccccCCEEEEEeCCCcCCChHHHHHHHH
Confidence 47999999998872 3344455545566433 2 56899999999999999999999999999
Q ss_pred HHHhcCceecEE
Q 046164 110 IMESRKKVIPIF 121 (202)
Q Consensus 110 i~~~~~~ViPVf 121 (202)
+.+.+++|+-|.
T Consensus 63 A~~~gkpIigV~ 74 (111)
T 1eiw_A 63 ARKSSKPIITVR 74 (111)
T ss_dssp HTTTTCCEEEEC
T ss_pred HHHcCCCEEEEE
Confidence 999999988874
No 11
>3hyn_A Putative signal transduction protein; DUF1863 family protein, nucleotide-binding protein, structur genomics; HET: MSE; 1.20A {Eubacterium rectale atcc 33656}
Probab=97.77 E-value=0.00014 Score=58.47 Aligned_cols=116 Identities=16% Similarity=0.128 Sum_probs=82.8
Q ss_pred ccEEEec--------------cccccchhHHHHHHHHHhcCCCeeEecCCCCC-------C-CCcchHHHHHhhhhcceE
Q 046164 32 CDVFINH--------------RGTDTKRTIAGLLHDHLSRLRLNPFLDSKNMK-------P-GDRLFDKIDTAIKHCKLG 89 (202)
Q Consensus 32 ydVFISy--------------~~~D~r~~fv~~L~~~L~~~Gi~vf~D~~~l~-------~-G~~i~~~i~~aI~~S~i~ 89 (202)
--+|++| +.+|. .+...|..--.+..+-.|.|.+++. . -..|...|.+.|..|+.+
T Consensus 6 n~~YvaF~~~~~~~~~~~~~~a~~Di--~yy~lL~aWk~n~n~F~F~D~Hd~~y~vrDsS~~e~tIKrrLReRI~~Sk~v 83 (189)
T 3hyn_A 6 NANYSAFYVSEPFSESNLGANSTHDF--VYYNMLRMWKGEDNSFPFNDAHDKTYNVRDGSDWEKTLKPRLHTRLDNSKNI 83 (189)
T ss_dssp CEEEEECCCCSSCCTTSTTGGGSTTH--HHHHHHHHHHHHCTTSSCCBTTTTCCCTTSCCCTTTTHHHHHHHHHHTEEEE
T ss_pred cCcEEEEeccCcccccccCCCccchH--HHHHHHHHHHcCCCceeecchhhccccccccccHHHHHHHHHHHHHHhcCcE
Confidence 3478888 34443 4566677666666665677876542 2 345788899999999999
Q ss_pred EEEeCCCCcCChhhHHHHHHHH-HhcCceecEEEecC-CCCccCCCCCccchhhhHHHHHHHH
Q 046164 90 VAVFSPRYCESYFCLHELALIM-ESRKKVIPIFYDVK-PSQLQVPDNGTCSRKELQRFSRALE 150 (202)
Q Consensus 90 IvV~S~~y~~S~wc~~EL~~i~-~~~~~ViPVfy~v~-p~~vr~~~~~~~~~e~~~~W~~AL~ 150 (202)
|+++|++...|.|...|+..++ +++.+||-|..+-. .+++.. .+|.+..+.-..|.+++.
T Consensus 84 IllIs~~T~~s~~v~wEIe~Ai~~~~~PII~Vy~~~~~~~~i~~-~~g~~~~~~~~~wpk~p~ 145 (189)
T 3hyn_A 84 ILFLSSITANSRALREEMNYGIGTKGLPVIVIYPDYDKKSDIVD-SNGNFKKQIKDLWDKLPA 145 (189)
T ss_dssp EEECCTTCCCCHHHHHHHHHHTTTTCCCEEEEETTCCSGGGTBC-TTSCBCHHHHHHHHTCHH
T ss_pred EEEEecCccccchhHHHHHHHHHhcCCcEEEEECCccccchhhh-ccccchhhHhhcCCcchh
Confidence 9999999999999999999999 89999999876532 234443 224444445557886443
No 12
>2f62_A Nucleoside 2-deoxyribosyltransferase; SGPP, structural genomics, PSI, S genomics of pathogenic protozoa consortium; HET: 12M; 1.50A {Trypanosoma brucei} SCOP: c.23.14.1 PDB: 2a0k_A* 2f2t_A* 2f64_A* 2f67_A*
Probab=94.63 E-value=0.23 Score=38.65 Aligned_cols=76 Identities=17% Similarity=0.162 Sum_probs=55.5
Q ss_pred hhHHHHHHHHHhcCCCeeEecCCCCC-CCCcchHHHHHhhhhcceEEEEeCC--CCcCChhhHHHHHHHHHhcCceecE
Q 046164 45 RTIAGLLHDHLSRLRLNPFLDSKNMK-PGDRLFDKIDTAIKHCKLGVAVFSP--RYCESYFCLHELALIMESRKKVIPI 120 (202)
Q Consensus 45 ~~fv~~L~~~L~~~Gi~vf~D~~~l~-~G~~i~~~i~~aI~~S~i~IvV~S~--~y~~S~wc~~EL~~i~~~~~~ViPV 120 (202)
..+...+...|++.|+.+|...++-. ....+...-.++|++|+++|++++| .-..++=+..|+..+...+++|+-+
T Consensus 26 ~~~~~~l~~~l~~~G~~v~~P~~~~~~~~~~i~~~d~~~i~~aD~vVA~ldpf~g~~~D~GTafEiGyA~AlgKPVi~l 104 (161)
T 2f62_A 26 ASYYNKVRELLKKENVMPLIPTDNEATEALDIRQKNIQMIKDCDAVIADLSPFRGHEPDCGTAFEVGCAAALNKMVLTF 104 (161)
T ss_dssp HHHHHHHHHHHHTTTCEEECTTTTCCSSHHHHHHHHHHHHHHCSEEEEECCCCSSSSCCHHHHHHHHHHHHTTCEEEEE
T ss_pred HHHHHHHHHHHHHCCCEEECCCccCcchHHHHHHHHHHHHHhCCEEEEEecCCCCCCCCCcHHHHHHHHHHCCCEEEEE
Confidence 36888999999999999988543211 1122333336889999999999996 2223444888999999999988765
No 13
>2khz_A C-MYC-responsive protein RCL; flexible loop, nucleus, phosphoprotein, nuclear protein; NMR {Rattus norvegicus} PDB: 2klh_A*
Probab=93.89 E-value=0.55 Score=36.39 Aligned_cols=94 Identities=14% Similarity=0.180 Sum_probs=62.4
Q ss_pred cCCCCCCCCccEEEecc--ccccchhHHHHHHHHHhcCCCeeEecCCC----CCCCCc-------chHHHHHhhhhcceE
Q 046164 23 IQLPITRRPCDVFINHR--GTDTKRTIAGLLHDHLSRLRLNPFLDSKN----MKPGDR-------LFDKIDTAIKHCKLG 89 (202)
Q Consensus 23 ~~~~~~~~~ydVFISy~--~~D~r~~fv~~L~~~L~~~Gi~vf~D~~~----l~~G~~-------i~~~i~~aI~~S~i~ 89 (202)
|++++..++..|||+=. +..........+.+.|++.| .|+.+..- -..|.. +...-.+.|++|+++
T Consensus 3 ~~~~~~~~~~kVYLAGp~~~~~~~~~~~~~i~~~l~~~G-~V~~~~~~~p~~~~~g~~~~~~~~~i~~~d~~~i~~aD~v 81 (165)
T 2khz_A 3 MAASGEQAPCSVYFCGSIRGGREDQALYARIVSRLRRYG-KVLTEHVADAELEPLGEEAAGGDQFIHEQDLNWLQQADVV 81 (165)
T ss_dssp CCCCSSCCCCEEEEECCCSSCSHHHHHHHHHHHHHHHHS-EESGGGTTTTSSSCCSTTSTTCHHHHHHHHHHHHHHCSEE
T ss_pred cccCCCCCCeEEEEECCCCCcHHHHHHHHHHHHHHHhcC-CcccccccCchhhccccccccCHHHHHHHHHHHHHhCCEE
Confidence 45555667778999832 11111224578999999999 88654321 012211 122224789999999
Q ss_pred EEEeCCCCcCChhhHHHHHHHHHhcCceecE
Q 046164 90 VAVFSPRYCESYFCLHELALIMESRKKVIPI 120 (202)
Q Consensus 90 IvV~S~~y~~S~wc~~EL~~i~~~~~~ViPV 120 (202)
|++++ ..+.=+..|+..+...+++|+-+
T Consensus 82 va~~~---~~d~Gt~~EiGyA~algKPVi~l 109 (165)
T 2khz_A 82 VAEVT---QPSLGVGYELGRAVALGKPILCL 109 (165)
T ss_dssp EEECS---SCCHHHHHHHHHHHHTCSSEEEE
T ss_pred EEECC---CCCCCHHHHHHHHHHCCCEEEEE
Confidence 99997 44666889999999999998765
No 14
>4fyk_A Deoxyribonucleoside 5'-monophosphate N-glycosidas; hydrolas; HET: SRA; 1.79A {Rattus norvegicus} PDB: 4fyh_A* 4fyi_A* 2klh_A*
Probab=92.34 E-value=0.49 Score=36.64 Aligned_cols=86 Identities=15% Similarity=0.186 Sum_probs=56.7
Q ss_pred cEEEe--ccccccchhHHHHHHHHHhcCCCeeEecC---CCC-CCCC-------cchHHHHHhhhhcceEEEEeCCCCcC
Q 046164 33 DVFIN--HRGTDTKRTIAGLLHDHLSRLRLNPFLDS---KNM-KPGD-------RLFDKIDTAIKHCKLGVAVFSPRYCE 99 (202)
Q Consensus 33 dVFIS--y~~~D~r~~fv~~L~~~L~~~Gi~vf~D~---~~l-~~G~-------~i~~~i~~aI~~S~i~IvV~S~~y~~ 99 (202)
.||++ +++.+....+...+.+.|++.| .|+... .++ ..|. .+...-.++|++|+++|++++ ..
T Consensus 4 kIYlAGP~f~~~e~~~~~~~i~~~L~~~G-~Vl~~hv~~~~l~~~g~~~~~~~~~i~~~d~~~i~~aD~vvA~l~---~~ 79 (152)
T 4fyk_A 4 SVYFCGSIRGGREDQALYARIVSRLRRYG-KVLTEHVADAELEPLGEEAAGGDQFIHEQNLNWLQQADVVVAEVT---QP 79 (152)
T ss_dssp EEEEECCSTTCCTTHHHHHHHHHHHTTTS-EECCCC-------------CCCHHHHHHHHHHHHHHCSEEEEECS---SC
T ss_pred eEEEECCCCCcHHHHHHHHHHHHHHHHcC-cccccccCchhhhhccccccCCHHHHHHHHHHHHHHCCEEEEeCC---CC
Confidence 35665 3332333467789999999999 675322 111 1121 134444578999999999998 44
Q ss_pred ChhhHHHHHHHHHhcCceecEEE
Q 046164 100 SYFCLHELALIMESRKKVIPIFY 122 (202)
Q Consensus 100 S~wc~~EL~~i~~~~~~ViPVfy 122 (202)
|.=...|+..+...+++|+-++-
T Consensus 80 d~Gt~~EiG~A~algkPV~~l~~ 102 (152)
T 4fyk_A 80 SLGVGYELGRAVALGKPILCLFR 102 (152)
T ss_dssp CHHHHHHHHHHHHTTCCEEEEEC
T ss_pred CCCHHHHHHHHHHcCCeEEEEEe
Confidence 66678899999999998876653
No 15
>3ehd_A Uncharacterized conserved protein; PSI,MCSG,PF05014, structural genomics, protein structure INI midwest center for structural genomics; HET: MSE; 2.15A {Enterococcus faecalis}
Probab=89.54 E-value=1.4 Score=34.25 Aligned_cols=76 Identities=14% Similarity=0.161 Sum_probs=55.0
Q ss_pred hhHHHHHHHHHhcC--CCeeEecCCCC----CCCCcchHHH----HHhhhhcceEEEEeCCCCcCChhhHHHHHHHHHhc
Q 046164 45 RTIAGLLHDHLSRL--RLNPFLDSKNM----KPGDRLFDKI----DTAIKHCKLGVAVFSPRYCESYFCLHELALIMESR 114 (202)
Q Consensus 45 ~~fv~~L~~~L~~~--Gi~vf~D~~~l----~~G~~i~~~i----~~aI~~S~i~IvV~S~~y~~S~wc~~EL~~i~~~~ 114 (202)
..+...+.++|++. |+.+|.--++- .++..+...+ .++|++|+++|.++.. ...+..+..|+..+...+
T Consensus 19 ~~~~~~l~~~L~~~~~g~~v~~P~~~~~~~~~~~~~~~~~i~~~D~~~i~~aD~viA~ldg-~~~D~Gt~~EiG~A~a~g 97 (162)
T 3ehd_A 19 LRYNAYLVEQIRQLDKTIDLYLPQENAAINDKSAYADSKMIALADTENVLASDLLVALLDG-PTIDAGVASEIGVAYAKG 97 (162)
T ss_dssp HHHHHHHHHHHHTTCTTEEEECGGGGSCCCCTTCCCCHHHHHHHHHHHHHTCSEEEEECCS-SSCCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhcCCCCEEECCCccccccccccchHHHHHHHHHHHHHHHCCEEEEECCC-CCCCCCHHHHHHHHHHCC
Confidence 35778899999865 89888754322 1233344444 4679999999999953 345678899999999999
Q ss_pred CceecEE
Q 046164 115 KKVIPIF 121 (202)
Q Consensus 115 ~~ViPVf 121 (202)
++|+.+.
T Consensus 98 kPVi~~~ 104 (162)
T 3ehd_A 98 IPVVALY 104 (162)
T ss_dssp CCEEEEC
T ss_pred CEEEEEE
Confidence 9887764
No 16
>1s2d_A Purine trans deoxyribosylase; ribosylate intermediate, PTD, ARAA, transferase; HET: AR4 ADE; 2.10A {Lactobacillus helveticus} SCOP: c.23.14.1 PDB: 1s2g_A* 1s2i_A* 1s2l_A 1s3f_A*
Probab=83.21 E-value=3.4 Score=32.12 Aligned_cols=86 Identities=15% Similarity=0.204 Sum_probs=58.6
Q ss_pred cEEEe---ccccccchhHHHHHHHHHhcC--CCeeEecCCC-C--------CCC--------CcchHHHHHhhhhcceEE
Q 046164 33 DVFIN---HRGTDTKRTIAGLLHDHLSRL--RLNPFLDSKN-M--------KPG--------DRLFDKIDTAIKHCKLGV 90 (202)
Q Consensus 33 dVFIS---y~~~D~r~~fv~~L~~~L~~~--Gi~vf~D~~~-l--------~~G--------~~i~~~i~~aI~~S~i~I 90 (202)
.||+. |+. + ...+...+.+.|++. |+.+|.-.++ . ..+ ..+...=.++|++|+++|
T Consensus 9 kIYLAGP~F~~-~-~~~~~~~~~~~L~~~~~g~~v~~P~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~D~~~i~~aD~vV 86 (167)
T 1s2d_A 9 KIYLGSPFYSD-A-QRERAAKAKELLAKNPSIAHVFFPFDDGFTDPDEKNPEIGGIRSMVWRDATYQNDLTGISNATCGV 86 (167)
T ss_dssp EEEEECCCSSH-H-HHHHHHHHHHHHTTCTTEEEEECTTC-CCCCTTCC-CCTTSCCCHHHHHHHHHHHHHHHHHCSEEE
T ss_pred EEEEECCCCCH-H-HHHHHHHHHHHHHhCCCcCEEECCccccccccccccccccccCChHHHHHHHHHHHHHHHhCCEEE
Confidence 46665 332 2 245788999999999 8888865432 1 111 112333346799999999
Q ss_pred EEeCCCCcCChhhHHHHHHHHHhcCceecEE
Q 046164 91 AVFSPRYCESYFCLHELALIMESRKKVIPIF 121 (202)
Q Consensus 91 vV~S~~y~~S~wc~~EL~~i~~~~~~ViPVf 121 (202)
.++...-. ++=+..|+..+...+++|+-+.
T Consensus 87 A~ldg~~~-D~GTa~EiGyA~algKPVv~l~ 116 (167)
T 1s2d_A 87 FLYDMDQL-DDGSAFXIGFMRAMHKPVILVP 116 (167)
T ss_dssp EEEESSSC-CHHHHHHHHHHHHTTCCEEEEE
T ss_pred EECCCCCC-CCCceeehhhHhhCCCeEEEEE
Confidence 99987544 4457889999999999988764
No 17
>3dt5_A Uncharacterized protein AF_0924; structural genomics, APC7732, unknown function, PSI-2, prote structure initiative; HET: MSE; 1.94A {Archaeoglobus fulgidus}
Probab=72.98 E-value=2.1 Score=30.81 Aligned_cols=56 Identities=20% Similarity=0.437 Sum_probs=36.2
Q ss_pred CCcCChhhHHHHHHHHHhcC--------ceecEEEecCCCCccCCCCCc-cchhhhHHHHHHHHH
Q 046164 96 RYCESYFCLHELALIMESRK--------KVIPIFYDVKPSQLQVPDNGT-CSRKELQRFSRALEE 151 (202)
Q Consensus 96 ~y~~S~wc~~EL~~i~~~~~--------~ViPVfy~v~p~~vr~~~~~~-~~~e~~~~W~~AL~~ 151 (202)
.|+-....-+|+..++.|++ +|+|.-++.....+..-.+-+ +..+.+.+|+.||.-
T Consensus 36 syvytaqtedeietiitcrrylagnnllrvlpmhfkfkadkiagsanwtfyakedfeqwkealdv 100 (135)
T 3dt5_A 36 SYVYTAQTEDEIETIITCRRYLAGNNLLRVLPMHFKFKADKIAGSANWTFYAKEDFEQWKEALDV 100 (135)
T ss_dssp SSCCCTTHHHHHHHHHHTTGGGSCHHHHHHCCSCCGGGEECCTTCSSEEESSHHHHHHHHHHHHH
T ss_pred hHheeccchhHHHHHHHHHHHhcccchhhhcchheeeecchhccccceeEEeHhhHHHHHHHHHH
Confidence 45656677899999999975 688875543322232211112 356889999999863
No 18
>2yvq_A Carbamoyl-phosphate synthase; conserved hypothetical protein, structural genomics, NPPSFA; 1.98A {Homo sapiens}
Probab=67.16 E-value=7.3 Score=29.13 Aligned_cols=62 Identities=11% Similarity=0.117 Sum_probs=37.8
Q ss_pred EEEeccccccchhHHHHHHHHHhcCCCeeEec--------CCC-----CCCCCcc-h----HHHHHhhhhcceEEEEeCC
Q 046164 34 VFINHRGTDTKRTIAGLLHDHLSRLRLNPFLD--------SKN-----MKPGDRL-F----DKIDTAIKHCKLGVAVFSP 95 (202)
Q Consensus 34 VFISy~~~D~r~~fv~~L~~~L~~~Gi~vf~D--------~~~-----l~~G~~i-~----~~i~~aI~~S~i~IvV~S~ 95 (202)
||||.++.| +.. +..+...|...|++++-- ..+ +..+..- . +.|...|++-.+-+||..|
T Consensus 27 vliSv~d~d-K~~-l~~~a~~l~~lGf~i~AT~GTa~~L~~~Gi~v~~v~k~~egg~~~~~~~i~d~i~~g~i~lVInt~ 104 (143)
T 2yvq_A 27 ILIGIQQSF-RPR-FLGVAEQLHNEGFKLFATEATSDWLNANNVPATPVAWPSQEGQNPSLSSIRKLIRDGSIDLVINLP 104 (143)
T ss_dssp EEEECCGGG-HHH-HHHHHHHHHTTTCEEEEEHHHHHHHHHTTCCCEEECCGGGC-----CBCHHHHHHTTSCCEEEECC
T ss_pred EEEEecccc-hHH-HHHHHHHHHHCCCEEEECchHHHHHHHcCCeEEEEEeccCCCcccccccHHHHHHCCCceEEEECC
Confidence 999998765 333 446777888889887621 111 1111100 1 4577777778888888877
Q ss_pred CC
Q 046164 96 RY 97 (202)
Q Consensus 96 ~y 97 (202)
+-
T Consensus 105 ~~ 106 (143)
T 2yvq_A 105 NN 106 (143)
T ss_dssp CC
T ss_pred CC
Confidence 64
No 19
>1f8y_A Nucleoside 2-deoxyribosyltransferase; active site, alpha/beta protein, biocatalyst, X- RAY crystallography; HET: 5MD; 2.40A {Lactobacillus leichmannii} SCOP: c.23.14.1 PDB: 1f8x_A*
Probab=64.62 E-value=9.3 Score=29.20 Aligned_cols=76 Identities=16% Similarity=0.126 Sum_probs=52.3
Q ss_pred hhHHHHHHHHHhcCCC----eeEecCCCCC------------CCC----cchHHHHHhhhhcceEEEEeCCCCcCChhhH
Q 046164 45 RTIAGLLHDHLSRLRL----NPFLDSKNMK------------PGD----RLFDKIDTAIKHCKLGVAVFSPRYCESYFCL 104 (202)
Q Consensus 45 ~~fv~~L~~~L~~~Gi----~vf~D~~~l~------------~G~----~i~~~i~~aI~~S~i~IvV~S~~y~~S~wc~ 104 (202)
..+...+...|+..|. .+|.-.++-. ++. .+...=.++|++|+++|.++...- .++=+.
T Consensus 18 ~~~~~~~~~~L~~~g~v~~~~v~~P~~~~~~~~~~~~~~~~~~~~~~~~~I~~~D~~~i~~aD~vvA~ldg~~-~D~GT~ 96 (157)
T 1f8y_A 18 NKAYKEAMEALKENPTIDLENSYVPLDNQYKGIRVDEHPEYLHDKVWATATYNNDLNGIKTNDIMLGVYIPDE-EDVGLG 96 (157)
T ss_dssp HHHHHHHHHHHHHCTTBCCTTSBCGGGCSGGGCCTTTCGGGGGCHHHHHHHHHHHHHHHHTSSEEEEECCGGG-CCHHHH
T ss_pred HHHHHHHHHHHHHCCCccccceECcccccccccccccccccccChHHHHHHHHHhHHHHHhCCEEEEEcCCCC-CCccHH
Confidence 4578889999999985 6666433211 111 122333467999999999997433 345578
Q ss_pred HHHHHHHHhcCceecEE
Q 046164 105 HELALIMESRKKVIPIF 121 (202)
Q Consensus 105 ~EL~~i~~~~~~ViPVf 121 (202)
.|+..+...+++|+-+.
T Consensus 97 ~EiGyA~A~gkPVv~~~ 113 (157)
T 1f8y_A 97 MELGYALSQGKYVLLVI 113 (157)
T ss_dssp HHHHHHHHTTCEEEEEE
T ss_pred HHHHHHHHCCCeEEEEE
Confidence 89999999999987764
No 20
>2jug_A TUBC protein; docking domain, dimer, nonribosomal peptide synthetase, tubulysin, ligase, phosphopantetheine, biosynthetic protein; NMR {Angiococcus disciformis}
Probab=50.17 E-value=11 Score=25.07 Aligned_cols=39 Identities=13% Similarity=0.382 Sum_probs=28.2
Q ss_pred HHHHHHHhcCCCeeEecCCCCC---CCCcchHHHHHhhhhcc
Q 046164 49 GLLHDHLSRLRLNPFLDSKNMK---PGDRLFDKIDTAIKHCK 87 (202)
Q Consensus 49 ~~L~~~L~~~Gi~vf~D~~~l~---~G~~i~~~i~~aI~~S~ 87 (202)
..|...|.+.||..|.|.+.+. |-..+.+++...+...+
T Consensus 8 ~~ll~~l~~~gi~l~~eg~kLr~~ap~g~l~~~l~~~l~~~K 49 (78)
T 2jug_A 8 GALLAHAASLGVRLWVEGERLRFQAPPGVMTPELQSRLGGAR 49 (78)
T ss_dssp HHHHHHHHHHTCEEEEETTEEEEECCTTTTCHHHHHHHTTCH
T ss_pred HHHHHHHHHcCCEEEEECCEeeeecCccccCHHHHHHHHHHH
Confidence 4577889999999999987664 44456677766665543
No 21
>2ql9_B Caspase-7; cysteine protease, apoptosis, thiol protease, zymogen, hydro hydrolase inhibitor complex; HET: CIT; 2.14A {Homo sapiens} PDB: 2ql7_B* 2ql5_B* 2qlb_B* 2qlf_B 2qlj_B* 3edr_B 3ibc_B 3ibf_B 1i51_B
Probab=45.73 E-value=5.2 Score=28.00 Aligned_cols=28 Identities=11% Similarity=0.031 Sum_probs=20.4
Q ss_pred ccEEEeccccccchhHHHHHHHHHhcCC
Q 046164 32 CDVFINHRGTDTKRTIAGLLHDHLSRLR 59 (202)
Q Consensus 32 ydVFISy~~~D~r~~fv~~L~~~L~~~G 59 (202)
.+-|+|||+.+....|+..|.+.|++.|
T Consensus 20 ~pG~~S~R~~~~GSwfIq~Lc~~l~~~~ 47 (97)
T 2ql9_B 20 VPGYYSWRSPGRGSWFVQALCSILEEHG 47 (97)
T ss_dssp CTTBCCEEETTTEEHHHHHHHHHHHHHT
T ss_pred CCCcEeeecCCCCCeeHHHHHHHHHHhC
Confidence 3345666666666789999999998754
No 22
>1qtn_B Caspase-8; apoptosis, dithiane-DIOL, caspase, cysteine-protease, hydrol hydrolase inhibitor complex; 1.20A {Homo sapiens} SCOP: c.17.1.1 PDB: 3kjn_B* 3kjq_B* 2y1l_B 1f9e_B* 1qdu_B*
Probab=44.67 E-value=5.1 Score=28.07 Aligned_cols=28 Identities=11% Similarity=-0.002 Sum_probs=19.6
Q ss_pred ccEEEeccccccchhHHHHHHHHHhcCC
Q 046164 32 CDVFINHRGTDTKRTIAGLLHDHLSRLR 59 (202)
Q Consensus 32 ydVFISy~~~D~r~~fv~~L~~~L~~~G 59 (202)
.+-|+|||+.+....|+..|.+.|++.|
T Consensus 22 ~pG~~S~R~~~~GSwfIq~Lc~~l~~~~ 49 (95)
T 1qtn_B 22 VNNCVSYRNPAEGTWYIQSLCQSLRERC 49 (95)
T ss_dssp CTTBCCEEETTTEEHHHHHHHHHHHHHG
T ss_pred CCCcEEEecCCCCcHHHHHHHHHHHHhC
Confidence 3345566665566789999999998654
No 23
>1v95_A Nuclear receptor coactivator 5; coactivator independent of AF-2 function (CIA), structural genomics, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: c.51.1.1
Probab=44.51 E-value=50 Score=24.49 Aligned_cols=38 Identities=11% Similarity=-0.009 Sum_probs=29.0
Q ss_pred chhHHHHHHHHHhcCCCeeEecCCCCCCCCcchHHHHHhh
Q 046164 44 KRTIAGLLHDHLSRLRLNPFLDSKNMKPGDRLFDKIDTAI 83 (202)
Q Consensus 44 r~~fv~~L~~~L~~~Gi~vf~D~~~l~~G~~i~~~i~~aI 83 (202)
-..++..+...|...|+++=+|.. .+++.+...|.++-
T Consensus 20 ~~~YA~~V~~~L~~~GiRvevD~~--r~~e~Lg~kIR~a~ 57 (130)
T 1v95_A 20 TKDYAESVGRKVRDLGMVVDLIFL--NTEVSLSQALEDVS 57 (130)
T ss_dssp GGHHHHHHHHHHHTTTCCEEEEEC--TTSSCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHCCCEEEEecC--CCCCcHHHHHHHHH
Confidence 358999999999999999988763 23566666666653
No 24
>1sc3_B Interleukin-1 beta convertase; malonate-bound caspase-1, hydrolase; 1.80A {Homo sapiens} SCOP: c.17.1.1 PDB: 1ice_B 1bmq_B* 1rwm_B* 1rwk_B* 1rwo_B* 1rwp_B* 1rwv_B* 1rww_B* 1rwn_B* 1sc1_B 1rwx_B 1sc4_B 2h4y_B* 2hbq_B* 2hbr_B* 3ns7_B* 3d6f_B* 3d6h_B* 3d6m_B* 2h4w_B* ...
Probab=44.19 E-value=6.7 Score=27.10 Aligned_cols=26 Identities=15% Similarity=0.215 Sum_probs=20.5
Q ss_pred EEEeccccccchhHHHHHHHHHhcCC
Q 046164 34 VFINHRGTDTKRTIAGLLHDHLSRLR 59 (202)
Q Consensus 34 VFISy~~~D~r~~fv~~L~~~L~~~G 59 (202)
-|+|||+......|+..|.+.|++.+
T Consensus 20 G~~S~R~~~~GSwfIq~Lc~~l~~~~ 45 (88)
T 1sc3_B 20 DNVSWRHPTMGSVFIGRLIEHMQEYA 45 (88)
T ss_dssp TBCCCEETTTEEHHHHHHHHHHHHHT
T ss_pred CCEeeEcCCCCCHHHHHHHHHHHHhC
Confidence 36677776667899999999998654
No 25
>1wu7_A Histidyl-tRNA synthetase; ligase, structural genomics, dimer; 2.40A {Thermoplasma acidophilum} SCOP: c.51.1.1 d.104.1.1
Probab=43.64 E-value=67 Score=27.86 Aligned_cols=57 Identities=16% Similarity=0.146 Sum_probs=37.9
Q ss_pred CccEEEeccccccchhHHHHHHHHHhcCCCeeEecCCCCCCCCcchHHHHHh-hhhcceEEEE
Q 046164 31 PCDVFINHRGTDTKRTIAGLLHDHLSRLRLNPFLDSKNMKPGDRLFDKIDTA-IKHCKLGVAV 92 (202)
Q Consensus 31 ~ydVFISy~~~D~r~~fv~~L~~~L~~~Gi~vf~D~~~l~~G~~i~~~i~~a-I~~S~i~IvV 92 (202)
.++|+|-.-+.+. ...+..|...|.+.|++|-+|..+ ..+...+..| ..+....|+|
T Consensus 332 p~~v~v~~~~~~~-~~~a~~l~~~Lr~~Gi~v~~d~~~----~~~~~~~~~a~~~g~~~~iii 389 (434)
T 1wu7_A 332 KKSVYICRVGKIN-SSIMNEYSRKLRERGMNVTVEIME----RGLSAQLKYASAIGADFAVIF 389 (434)
T ss_dssp SCEEEEEEESSCC-HHHHHHHHHHHHTTTCEEEECCSC----CCHHHHHHHHHHTTCSEEEEE
T ss_pred CCcEEEEEcChHH-HHHHHHHHHHHHHCCCeEEEecCC----CCHHHHHHHHHHCCCCEEEEE
Confidence 4899866554443 467889999999999999998753 3445555554 3344444433
No 26
>1evl_A Threonyl-tRNA synthetase; amino acid recognition, zinc ION, adenylate analog, deletion mutant, ligase; HET: TSB; 1.55A {Escherichia coli} SCOP: c.51.1.1 d.104.1.1 PDB: 1evk_A* 1fyf_A* 1kog_A*
Probab=42.31 E-value=74 Score=27.29 Aligned_cols=59 Identities=19% Similarity=0.200 Sum_probs=39.6
Q ss_pred CCccEEEeccccccchhHHHHHHHHHhcCCCeeEecCCCCCCCCcchHHHHHhh-hhcceEEEEeC
Q 046164 30 RPCDVFINHRGTDTKRTIAGLLHDHLSRLRLNPFLDSKNMKPGDRLFDKIDTAI-KHCKLGVAVFS 94 (202)
Q Consensus 30 ~~ydVFISy~~~D~r~~fv~~L~~~L~~~Gi~vf~D~~~l~~G~~i~~~i~~aI-~~S~i~IvV~S 94 (202)
..++|+|---+++ -...+..|...|++.|++|-+|..+ ..+...+..|- .+... ++|+.
T Consensus 297 ap~~v~vi~~~~~-~~~~a~~l~~~Lr~~Gi~v~~d~~~----~~~~~k~~~A~~~g~p~-~iiiG 356 (401)
T 1evl_A 297 APVQVVIMNITDS-QSEYVNELTQKLSNAGIRVKADLRN----EKIGFKIREHTLRRVPY-MLVCG 356 (401)
T ss_dssp CSSCEEEEESSGG-GHHHHHHHHHHHHHTTCCEEEECCS----SCHHHHHHHHHHTTCSE-EEEEC
T ss_pred CCeEEEEEecCHH-HHHHHHHHHHHHHHCCCEEEEECCC----CCHHHHHHHHHhcCCCE-EEEEC
Confidence 4589988765443 3567889999999999999998753 34556665553 33443 44443
No 27
>1pyo_B Caspase-2; apoptosis, caspase, alpha-beta, thiol protease, hydrolase-HY inhibitor complex; 1.65A {Homo sapiens} SCOP: c.17.1.1 PDB: 2p2c_B 3r5j_B 3r6g_B 3r7b_B 3r7n_B 3r7s_B 3r6l_B
Probab=42.05 E-value=6.7 Score=27.94 Aligned_cols=28 Identities=14% Similarity=-0.062 Sum_probs=20.3
Q ss_pred ccEEEeccccccchhHHHHHHHHHhcCC
Q 046164 32 CDVFINHRGTDTKRTIAGLLHDHLSRLR 59 (202)
Q Consensus 32 ydVFISy~~~D~r~~fv~~L~~~L~~~G 59 (202)
.+-|+|||+......|+..|.+.|++.+
T Consensus 24 ~pG~~S~R~~~~GSwFIq~Lc~~l~~~~ 51 (105)
T 1pyo_B 24 LKGTAAMRNTKRGSWYIEALAQVFSERA 51 (105)
T ss_dssp CTTBCCEEETTTEEHHHHHHHHHHHHHT
T ss_pred CCCcEEEecCCCCCHHHHHHHHHHHHHC
Confidence 3445666666667789999999998654
No 28
>2dko_B Caspase-3; low barrier hydrogen bond, caspase, drug design, radiation D tetrahedral intermediate, protease; 1.06A {Homo sapiens} PDB: 2c2k_B* 2c2m_B* 2c2o_B* 2c1e_B* 2cdr_B* 2cnk_B* 2cnl_B* 2cnn_B* 2cno_B* 2cjy_B 1pau_B 1re1_B* 1rhk_B* 1rhm_B* 1rhq_B* 1rhr_B* 1rhu_B* 1rhj_B* 1i3o_B* 3edq_B ...
Probab=41.79 E-value=6.6 Score=27.90 Aligned_cols=25 Identities=12% Similarity=0.135 Sum_probs=17.5
Q ss_pred EEeccccccchhHHHHHHHHHhcCC
Q 046164 35 FINHRGTDTKRTIAGLLHDHLSRLR 59 (202)
Q Consensus 35 FISy~~~D~r~~fv~~L~~~L~~~G 59 (202)
|+|||+......|+..|.+.|++.|
T Consensus 29 ~vS~R~~~~GSwfIq~Lc~~l~~~~ 53 (103)
T 2dko_B 29 YYSWRNSKDGSWFIQSLCAMLKQYA 53 (103)
T ss_dssp BCCEEETTTEEHHHHHHHHHHHHHT
T ss_pred cEeEEcCCCCCeeHHHHHHHHHHhC
Confidence 4445554456789999999998654
No 29
>1byr_A Protein (endonuclease); phosphodiesterase,; 2.00A {Salmonella typhimurium} SCOP: d.136.1.1 PDB: 1bys_A
Probab=41.12 E-value=46 Score=23.92 Aligned_cols=47 Identities=6% Similarity=0.072 Sum_probs=24.4
Q ss_pred hHHHHHHHHHhcCCCeeEecCCCCCCCCcchHHHHHhhh-hcceEEEEe
Q 046164 46 TIAGLLHDHLSRLRLNPFLDSKNMKPGDRLFDKIDTAIK-HCKLGVAVF 93 (202)
Q Consensus 46 ~fv~~L~~~L~~~Gi~vf~D~~~l~~G~~i~~~i~~aI~-~S~i~IvV~ 93 (202)
.+...+.+.+.+..-.+++-.-.+ +.+.+.+.|.+|.+ +-++-|++=
T Consensus 14 ~~~~~~~~~i~~A~~~I~i~~~~~-~~~~i~~aL~~a~~rGV~Vril~~ 61 (155)
T 1byr_A 14 SARVLVLSAIDSAKTSIRMMAYSF-TAPDIMKALVAAKKRGVDVKIVID 61 (155)
T ss_dssp HHHHHHHHHHHHCSSEEEEEESSB-CCHHHHHHHHHHHHTTCEEEEEEE
T ss_pred cHHHHHHHHHHHHhhEEEEEEEEe-CCHHHHHHHHHHHHCCCEEEEEEe
Confidence 355667777766655555443333 34455556655543 334444443
No 30
>1qey_A MNT-C, protein (regulatory protein MNT); oligomerization, transcriptional control, P22 MNT repressor, gene regulation; NMR {Enterobacteria phage P22} SCOP: h.2.1.1
Probab=40.17 E-value=29 Score=19.38 Aligned_cols=19 Identities=16% Similarity=0.258 Sum_probs=15.9
Q ss_pred CHHHHHHHHHHHHHHHhhh
Q 046164 166 DWSEFLTTATDAVINNLIE 184 (202)
Q Consensus 166 ~e~~~i~~Iv~~v~~~L~~ 184 (202)
-.++.++++|-+.++.|+.
T Consensus 10 ~qse~vKk~vfdtLk~~Y~ 28 (31)
T 1qey_A 10 EQSELVKKMVFDTLKDLYK 28 (31)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhc
Confidence 3688999999999988875
No 31
>2xzd_B Caspase-3; hydrolase-protein binding complex, de novo protein, apoptosi ankyrin repeat protein, ribosome display; 2.10A {Homo sapiens} PDB: 2xzt_B 2y0b_B
Probab=35.42 E-value=11 Score=27.62 Aligned_cols=27 Identities=11% Similarity=0.076 Sum_probs=19.2
Q ss_pred cEEEeccccccchhHHHHHHHHHhcCC
Q 046164 33 DVFINHRGTDTKRTIAGLLHDHLSRLR 59 (202)
Q Consensus 33 dVFISy~~~D~r~~fv~~L~~~L~~~G 59 (202)
+-|+|||.......|+..|.+.|++.|
T Consensus 26 pG~vS~R~~~~GSwFIQ~Lc~vl~~~~ 52 (118)
T 2xzd_B 26 PGYYSWRNSKDGSWFIQSLCAMLKQYA 52 (118)
T ss_dssp TTBCCCEETTTEEHHHHHHHHHHHHHT
T ss_pred CCCEeeEeCCCCCccHHHHHHHHHHhC
Confidence 345556655556789999999998654
No 32
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=33.90 E-value=91 Score=22.24 Aligned_cols=26 Identities=15% Similarity=0.229 Sum_probs=17.7
Q ss_pred CCC-cchHHHHHhhhhcceEEEEeCCC
Q 046164 71 PGD-RLFDKIDTAIKHCKLGVAVFSPR 96 (202)
Q Consensus 71 ~G~-~i~~~i~~aI~~S~i~IvV~S~~ 96 (202)
||. .+.......++.++.+|+|++..
T Consensus 69 ~G~~~~~~~~~~~~~~~d~~i~v~d~~ 95 (181)
T 2efe_B 69 AGQERYHSLAPMYYRGAAAAIIVFDVT 95 (181)
T ss_dssp CCSGGGGGGTHHHHTTCSEEEEEEETT
T ss_pred CCChhhhhhhHHHhccCCEEEEEEECC
Confidence 453 33334455688999999999865
No 33
>3rjm_B Caspase-2; caspase-2, caspase, hydrolase-hydrolase inhibitor; HET: 3PX; 2.55A {Homo sapiens}
Probab=33.60 E-value=11 Score=27.59 Aligned_cols=28 Identities=14% Similarity=-0.062 Sum_probs=19.6
Q ss_pred ccEEEeccccccchhHHHHHHHHHhcCC
Q 046164 32 CDVFINHRGTDTKRTIAGLLHDHLSRLR 59 (202)
Q Consensus 32 ydVFISy~~~D~r~~fv~~L~~~L~~~G 59 (202)
.+.|+|||.......|+..|.+.|++.|
T Consensus 25 ~pGyvS~R~~~~GSwFIQ~Lc~vl~~~~ 52 (117)
T 3rjm_B 25 LKGTAAMRNTKRGSWYIEALAQVFSERA 52 (117)
T ss_dssp CTTCCCEEETTTEEHHHHHHHHHHHHHT
T ss_pred CCCeECeeecCCCChHHHHHHHHHHHhC
Confidence 3445556655556789999999998654
No 34
>3net_A Histidyl-tRNA synthetase; aminoacyl-tRNA synthetase, ligase, structural genomics, PSI- nostoc, protein structure initiative; 2.70A {Nostoc SP}
Probab=32.20 E-value=73 Score=28.15 Aligned_cols=62 Identities=13% Similarity=0.089 Sum_probs=40.8
Q ss_pred CCCccEEEeccccccchhHHHHHHHHHhcCCCeeEecCCCCCCCCcchHHHHHhhhhcceEEEEeCC
Q 046164 29 RRPCDVFINHRGTDTKRTIAGLLHDHLSRLRLNPFLDSKNMKPGDRLFDKIDTAIKHCKLGVAVFSP 95 (202)
Q Consensus 29 ~~~ydVFISy~~~D~r~~fv~~L~~~L~~~Gi~vf~D~~~l~~G~~i~~~i~~aI~~S~i~IvV~S~ 95 (202)
....||+|-.-+++. ...+..+...|.+.|++|-+|..+ ..+...+..|-..---.++|+.+
T Consensus 369 ~~p~~V~Vi~~~~~~-~~~A~~la~~LR~~Gi~ve~d~~~----~sl~~q~k~A~~~g~p~~iiiG~ 430 (465)
T 3net_A 369 PTPAQVVVVNMQDEL-MPTYLKVSQQLRQAGLNVITNFEK----RQLGKQFQAADKQGIRFCVIIGA 430 (465)
T ss_dssp SCSCCEEECCSCGGG-HHHHHHHHHHHHHTTCCEEECCSC----CCHHHHHHHHHHHTCCEEEECCH
T ss_pred CCCCeEEEEEcCHHH-HHHHHHHHHHHHHCCCEEEEEeCC----CCHHHHHHHHHHcCCCEEEEECc
Confidence 345899986655543 467889999999999999998653 34555565554333334555543
No 35
>1qe0_A Histidyl-tRNA synthetase; class II tRNA synthetase, beta sheet, ligase; 2.70A {Staphylococcus aureus} SCOP: c.51.1.1 d.104.1.1
Probab=31.11 E-value=93 Score=26.62 Aligned_cols=60 Identities=20% Similarity=0.158 Sum_probs=38.5
Q ss_pred CCCccEEEeccccccchhHHHHHHHHHhcCCCeeEecCCCCCCCCcchHHHHHhh-hhcceEEEEeC
Q 046164 29 RRPCDVFINHRGTDTKRTIAGLLHDHLSRLRLNPFLDSKNMKPGDRLFDKIDTAI-KHCKLGVAVFS 94 (202)
Q Consensus 29 ~~~ydVFISy~~~D~r~~fv~~L~~~L~~~Gi~vf~D~~~l~~G~~i~~~i~~aI-~~S~i~IvV~S 94 (202)
...++|+|-.-+.+ ....+..+...|.+.|++|-+|..+ ..+...+..|- .+.. .++++.
T Consensus 327 ~~p~~v~i~~~~~~-~~~~a~~l~~~Lr~~Gi~v~~d~~~----~~~~~~~~~a~~~g~p-~~iiig 387 (420)
T 1qe0_A 327 EENLDLFIVTMGDQ-ADRYAVKLLNHLRHNGIKADKDYLQ----RKIKGQMKQADRLGAK-FTIVIG 387 (420)
T ss_dssp CCCCSEEEEECHHH-HHHHHHHHHHHHHTTTCCEEECCSC----CCHHHHHHHHHHTTCS-EEEEEC
T ss_pred CCCCeEEEEEeCHH-HHHHHHHHHHHHHHCCCEEEEecCC----CCHHHHHHHHHHcCCC-EEEEEC
Confidence 34588987654433 2356888999999999999998743 34555555543 3333 444444
No 36
>1htt_A Histidyl-tRNA synthetase; complex (tRNA synthetase/His-adenylate), aminoacyl-tRNA synthase, ligase; HET: HIS AMP; 2.60A {Escherichia coli} SCOP: c.51.1.1 d.104.1.1 PDB: 1kmm_A* 1kmn_A* 2el9_A*
Probab=30.73 E-value=1.1e+02 Score=26.32 Aligned_cols=57 Identities=14% Similarity=0.201 Sum_probs=38.1
Q ss_pred CCccEEEeccccccchhHHHHHHHHHhcC--CCeeEecCCCCCCCCcchHHHHHhh-hhcceEEE
Q 046164 30 RPCDVFINHRGTDTKRTIAGLLHDHLSRL--RLNPFLDSKNMKPGDRLFDKIDTAI-KHCKLGVA 91 (202)
Q Consensus 30 ~~ydVFISy~~~D~r~~fv~~L~~~L~~~--Gi~vf~D~~~l~~G~~i~~~i~~aI-~~S~i~Iv 91 (202)
..++|+|-.-+.+ ....+..|...|.+. |++|-+|..+ ..+...+..|- .+....|+
T Consensus 326 ~p~~v~i~~~~~~-~~~~a~~l~~~Lr~~~~Gi~v~~d~~~----~~~~~~~~~a~~~g~p~~ii 385 (423)
T 1htt_A 326 PVVDIYLVASGAD-TQSAAMALAERLRDELPGVKLMTNHGG----GNFKKQFARADKWGARVAVV 385 (423)
T ss_dssp CSCSEEEEECSTT-HHHHHHHHHHHHHHHSTTCCEEECCSC----CCHHHHHHHHHHHTCSEEEE
T ss_pred CCCcEEEEEcCHH-HHHHHHHHHHHHHcCCCCcEEEEeCCC----CCHHHHHHHHHHcCCCEEEE
Confidence 4579988775544 346788999999999 9999998753 34555555543 34444443
No 37
>1nj1_A PROR, proline-tRNA synthetase, proline--tRNA ligase; protein-aminoacyladenylate complex class-II tRNA synthetase,; HET: 5CA; 2.55A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.51.1.1 d.68.5.1 d.104.1.1 PDB: 1nj2_A 1nj5_A* 1nj6_A*
Probab=30.73 E-value=56 Score=29.35 Aligned_cols=43 Identities=16% Similarity=0.170 Sum_probs=31.3
Q ss_pred CCccEEEecc-c-cc--cchhHHHHHHHHHhcCCCeeEecCCCCCCC
Q 046164 30 RPCDVFINHR-G-TD--TKRTIAGLLHDHLSRLRLNPFLDSKNMKPG 72 (202)
Q Consensus 30 ~~ydVFISy~-~-~D--~r~~fv~~L~~~L~~~Gi~vf~D~~~l~~G 72 (202)
..|+|+|--- + .+ .-...+..|.+.|++.|++|-+|+++-.+|
T Consensus 313 aP~qV~Iipi~~~~~~~~~~~~a~~l~~~Lr~~Gi~v~~D~~~~s~g 359 (501)
T 1nj1_A 313 AAHQVVIVPIIFKKAAEEVMEACRELRSRLEAAGFRVHLDDRDIRAG 359 (501)
T ss_dssp SSCSEEEEECCSSSSHHHHHHHHHHHHHHHHTTTCCEEECCCSSCHH
T ss_pred cCceEEEEEeccCCchHHHHHHHHHHHHHHHhCCCEEEEECCCCCHH
Confidence 5688887654 3 21 235688999999999999999998643334
No 38
>4g85_A Histidine-tRNA ligase, cytoplasmic; synthetase; 3.11A {Homo sapiens}
Probab=29.46 E-value=1.7e+02 Score=26.03 Aligned_cols=62 Identities=13% Similarity=0.037 Sum_probs=39.1
Q ss_pred CCCccEEEeccccccchhHHHHHHHHHhcCCCeeEecCCCCCCCCcchHHHHHhhhhcceEEEEeC
Q 046164 29 RRPCDVFINHRGTDTKRTIAGLLHDHLSRLRLNPFLDSKNMKPGDRLFDKIDTAIKHCKLGVAVFS 94 (202)
Q Consensus 29 ~~~ydVFISy~~~D~r~~fv~~L~~~L~~~Gi~vf~D~~~l~~G~~i~~~i~~aI~~S~i~IvV~S 94 (202)
....||||..-+++. ...+..|...|.++||++-+|.. .+..+...+..|=..---.++|+.
T Consensus 417 ~~~~~V~v~~~~~~~-~~~a~~l~~~Lr~~Gi~ve~~~~---~~~~l~~q~k~A~~~g~~~~viiG 478 (517)
T 4g85_A 417 TTETQVLVASAQKKL-LEERLKLVSELWDAGIKAELLYK---KNPKLLNQLQYCEEAGIPLVAIIG 478 (517)
T ss_dssp SCCCCEEEEESSSSC-HHHHHHHHHHHHHTTCCEEECSS---SSCCHHHHHHHHHHHCCCEEEEEC
T ss_pred CCCCEEEEEeCCHHH-HHHHHHHHHHHHHCCCcEEEEeC---CCCCHHHHHHHHHHCCCCEEEEEC
Confidence 456899987665543 35678899999999999977642 233455566555333222444443
No 39
>2i4l_A Proline-tRNA ligase; alpha beta; 2.00A {Rhodopseudomonas palustris} PDB: 2i4m_A* 2i4n_A* 2i4o_A*
Probab=29.16 E-value=39 Score=29.88 Aligned_cols=49 Identities=22% Similarity=0.184 Sum_probs=33.3
Q ss_pred CCccEEEeccc--cccchhHHHHHHHHHhcCCCeeEecCCCCCCCCcchHHHHHh
Q 046164 30 RPCDVFINHRG--TDTKRTIAGLLHDHLSRLRLNPFLDSKNMKPGDRLFDKIDTA 82 (202)
Q Consensus 30 ~~ydVFISy~~--~D~r~~fv~~L~~~L~~~Gi~vf~D~~~l~~G~~i~~~i~~a 82 (202)
..++|+|---+ .+.....+..|+..|++.|+.|.+|+++- .+...+..|
T Consensus 364 ap~~v~vi~~~~~~~~~~~~a~~l~~~Lr~~Gi~v~~D~~~~----~~g~k~~~a 414 (458)
T 2i4l_A 364 APFRVTILNLKQGDAATDAACDQLYRELSAKGVDVLYDDTDQ----RAGAKFATA 414 (458)
T ss_dssp CSCSEEEEESSTTCHHHHHHHHHHHHHHHHTTCCEEEECSSC----CHHHHHHHH
T ss_pred CCceEEEEecCCCCHHHHHHHHHHHHHHhhCCCEEEEECCCC----CHHHHHHHH
Confidence 45888876432 12234678899999999999999998643 344444444
No 40
>2d00_A V-type ATP synthase subunit F; V-ATPase, CHEY, FRET, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.149.1.1 PDB: 3a5c_H* 3a5d_H 3j0j_H*
Probab=28.48 E-value=61 Score=22.98 Aligned_cols=64 Identities=8% Similarity=0.164 Sum_probs=41.8
Q ss_pred HHHhcCCCeeEecCCCCCCCCcchHHHHHhhhhcceEEEEeCCCCcCChhhHHHHHHHHHhcCceecEEEec
Q 046164 53 DHLSRLRLNPFLDSKNMKPGDRLFDKIDTAIKHCKLGVAVFSPRYCESYFCLHELALIMESRKKVIPIFYDV 124 (202)
Q Consensus 53 ~~L~~~Gi~vf~D~~~l~~G~~i~~~i~~aI~~S~i~IvV~S~~y~~S~wc~~EL~~i~~~~~~ViPVfy~v 124 (202)
..+.-.|+.+|.. ...+.+.+.+.+.+++-++.|++++++.+.. +.+++.... ....+|++..+
T Consensus 16 ~GFrLaGi~~~~v----~~~ee~~~~~~~l~~~~digIIlIte~~a~~--i~~~i~~~~--~~~~~P~Il~I 79 (109)
T 2d00_A 16 QGFRLAGLEGYGA----SSAEEAQSLLETLVERGGYALVAVDEALLPD--PERAVERLM--RGRDLPVLLPI 79 (109)
T ss_dssp HHHHHTTSEEEEC----SSHHHHHHHHHHHHHHCCCSEEEEETTTCSC--HHHHHHHHT--TCCCCCEEEEE
T ss_pred HHHHHcCCeEEEe----CCHHHHHHHHHHHhhCCCeEEEEEeHHHHHh--hHHHHHHHH--hCCCCeEEEEE
Confidence 3556789988854 2334556667777788899999999998872 344433332 13457776654
No 41
>4g84_A Histidine--tRNA ligase, cytoplasmic; synthetase; 2.40A {Homo sapiens}
Probab=27.96 E-value=1.7e+02 Score=25.30 Aligned_cols=62 Identities=13% Similarity=0.037 Sum_probs=39.0
Q ss_pred CCCccEEEeccccccchhHHHHHHHHHhcCCCeeEecCCCCCCCCcchHHHHHhhhhcceEEEEeC
Q 046164 29 RRPCDVFINHRGTDTKRTIAGLLHDHLSRLRLNPFLDSKNMKPGDRLFDKIDTAIKHCKLGVAVFS 94 (202)
Q Consensus 29 ~~~ydVFISy~~~D~r~~fv~~L~~~L~~~Gi~vf~D~~~l~~G~~i~~~i~~aI~~S~i~IvV~S 94 (202)
....||+|...+++. ...+..|...|.++||+|-+|.. .+..+...+..|=..---.++|+.
T Consensus 364 ~~~~~v~v~~~~~~~-~~~a~~l~~~Lr~~Gi~ve~~~~---~~~~l~~q~k~A~~~g~~~~viiG 425 (464)
T 4g84_A 364 TTETQVLVASAQKKL-LEERLKLVSELWDAGIKAELLYK---KNPKLLNQLQYCEEAGIPLVAIIG 425 (464)
T ss_dssp SCCCCEEEECSSSSC-HHHHHHHHHHHHHTTCCEECCSC---SSCCHHHHHHHHHHHTCCEEEECC
T ss_pred cccceEEEEeCCHHH-HHHHHHHHHHHHHCCCcEEEEeC---CCCCHHHHHHHHHHCCCCEEEEEC
Confidence 345789998766554 35677899999999999977642 233455556555332222344443
No 42
>3n75_A LDC, lysine decarboxylase, inducible; pyridoxal-5'-phosphate dependent decarboxylase, acid stress stringent response; HET: LLP G4P P6G; 2.00A {Escherichia coli} PDB: 3q16_A*
Probab=26.33 E-value=1.1e+02 Score=28.81 Aligned_cols=70 Identities=16% Similarity=0.123 Sum_probs=48.2
Q ss_pred hHHHHHHHHHhcCCCeeEecCCCCCCCCcchHHHHHhhhhcceEEEEeCCCCcCChhhHHHHHHHHHhcCceecEEEecC
Q 046164 46 TIAGLLHDHLSRLRLNPFLDSKNMKPGDRLFDKIDTAIKHCKLGVAVFSPRYCESYFCLHELALIMESRKKVIPIFYDVK 125 (202)
Q Consensus 46 ~fv~~L~~~L~~~Gi~vf~D~~~l~~G~~i~~~i~~aI~~S~i~IvV~S~~y~~S~wc~~EL~~i~~~~~~ViPVfy~v~ 125 (202)
..+..|..+|++.|+.|.... ...+.+.-+-.++++..||+|-+-. ..++...++.+..=+|||.-.+
T Consensus 17 ~~i~~L~~~Le~~g~~V~~a~-------s~~Da~~~i~~~~~i~avIld~d~~-----~~~ll~~Ir~~~~~iPVFl~~~ 84 (715)
T 3n75_A 17 EPIRELHRALERLNFQIVYPN-------DRDDLLKLIENNARLCGVIFDWDKY-----NLELCEEISKMNENLPLYAFAN 84 (715)
T ss_dssp HHHHHHHHHHHHTTCEEECCS-------SHHHHHHHHHHCTTEEEEEEEHHHH-----HHHHHHHHHHHCTTCEEEEECC
T ss_pred HHHHHHHHHHHHCCcEEEEeC-------CHHHHHHHHHhCCCceEEEEecccc-----HHHHHHHHHHhCCCCCEEEEec
Confidence 357789999999999986543 2333443344677899999985431 3566666776777899998655
Q ss_pred CC
Q 046164 126 PS 127 (202)
Q Consensus 126 p~ 127 (202)
..
T Consensus 85 ~~ 86 (715)
T 3n75_A 85 TY 86 (715)
T ss_dssp TT
T ss_pred CC
Confidence 43
No 43
>1nyr_A Threonyl-tRNA synthetase 1; ATP, threonine, ligase; HET: ATP; 2.80A {Staphylococcus aureus} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1 PDB: 1nyq_A*
Probab=25.51 E-value=1.9e+02 Score=26.65 Aligned_cols=60 Identities=23% Similarity=0.195 Sum_probs=38.6
Q ss_pred CCccEEEeccccccchhHHHHHHHHHhcCCCeeEecCCCCCCCCcchHHHHHhh-hhcceEEEEeC
Q 046164 30 RPCDVFINHRGTDTKRTIAGLLHDHLSRLRLNPFLDSKNMKPGDRLFDKIDTAI-KHCKLGVAVFS 94 (202)
Q Consensus 30 ~~ydVFISy~~~D~r~~fv~~L~~~L~~~Gi~vf~D~~~l~~G~~i~~~i~~aI-~~S~i~IvV~S 94 (202)
..++|+|---+.+.-...+..|.+.|++.|++|.+|.++ ..+...+..|- .+.. .++|+.
T Consensus 544 ap~qv~vip~~~~~~~~~a~~i~~~Lr~~Gi~v~~D~~~----~~~g~k~~~a~~~g~p-~~iivG 604 (645)
T 1nyr_A 544 APKQVQIIPVNVDLHYDYARQLQDELKSQGVRVSIDDRN----EKMGYKIREAQMQKIP-YQIVVG 604 (645)
T ss_dssp CSSCEEEEESSHHHHHHHHHHHHHHHHTTTCCEEECCSS----CCHHHHHHHHHHHTCS-EEEEEC
T ss_pred CCceEEEEEcccHHHHHHHHHHHHHHHhCCCEEEEECCC----CCHHHHHHHHHhcCCC-EEEEEc
Confidence 347887754431223568899999999999999999753 34555665553 3333 344443
No 44
>1bax_A M-PMV MA, M-PMV matrix protein; core protein, polyprotein, myristylation; NMR {Mason-pfizer monkey virus} SCOP: a.61.1.3 PDB: 2f76_X 2f77_X
Probab=24.55 E-value=39 Score=23.84 Aligned_cols=19 Identities=11% Similarity=0.004 Sum_probs=17.0
Q ss_pred hhHHHHHHHHHhcCCCeeE
Q 046164 45 RTIAGLLHDHLSRLRLNPF 63 (202)
Q Consensus 45 ~~fv~~L~~~L~~~Gi~vf 63 (202)
..|+..|...|+++||+|-
T Consensus 9 q~fi~~lk~lLk~RgIkVk 27 (94)
T 1bax_A 9 ERYVEQLKQALKTRGVKVK 27 (94)
T ss_pred hHHHHHHHHHHHHcCeeec
Confidence 4799999999999999983
No 45
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=24.39 E-value=87 Score=24.02 Aligned_cols=32 Identities=31% Similarity=0.385 Sum_probs=24.4
Q ss_pred EEEecccccc--chhHHHHHHHHHhcCCCeeEec
Q 046164 34 VFINHRGTDT--KRTIAGLLHDHLSRLRLNPFLD 65 (202)
Q Consensus 34 VFISy~~~D~--r~~fv~~L~~~L~~~Gi~vf~D 65 (202)
.||.+-|-|- +.+-+..|.+.|+.+|+.|..-
T Consensus 1 mfI~~EG~DGsGKsTq~~~L~~~L~~~g~~v~~t 34 (197)
T 3hjn_A 1 MFITFEGIDGSGKSTQIQLLAQYLEKRGKKVILK 34 (197)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEE
Confidence 3888877663 2567888999999999987653
No 46
>3aon_B V-type sodium ATPase subunit G; V-ATPase, coiled-coil, alpha/beta fold, hydrol Na(+)-ATPase, NTPA3-NTPB3, NTPC, central AXIS; HET: MSE; 2.00A {Enterococcus hirae}
Probab=24.33 E-value=45 Score=24.02 Aligned_cols=61 Identities=10% Similarity=0.161 Sum_probs=40.2
Q ss_pred HHhcCCCeeEecCCCCCCCCcchHHHHHhhhhcceEEEEeCCCCcCChhhHHHHHHHHHhcCceecEEEec
Q 046164 54 HLSRLRLNPFLDSKNMKPGDRLFDKIDTAIKHCKLGVAVFSPRYCESYFCLHELALIMESRKKVIPIFYDV 124 (202)
Q Consensus 54 ~L~~~Gi~vf~D~~~l~~G~~i~~~i~~aI~~S~i~IvV~S~~y~~S~wc~~EL~~i~~~~~~ViPVfy~v 124 (202)
.++-.|+.+|... .-+.+.+.+.+.+++ ++.|++++++.+.. +.+++.. ++ +..+|++..+
T Consensus 16 GFrLaGie~~~v~----~~ee~~~~~~~l~~~-digIIlIte~ia~~--i~~~i~~-~~--~~~~P~IveI 76 (115)
T 3aon_B 16 PFRLFGFDVQHGT----TKTEIRKTIDEMAKN-EYGVIYITEQCANL--VPETIER-YK--GQLTPAIILI 76 (115)
T ss_dssp GGGGGTCEEECCC----SHHHHHHHHHHHHHT-TEEEEEEEHHHHTT--CHHHHHH-HH--TSSSCEEEEE
T ss_pred HHHHcCCeEEEeC----CHHHHHHHHHHHHhc-CceEEEEeHHHHHH--hHHHHHH-Hh--CCCCCEEEEE
Confidence 4566799887542 234555667777777 99999999987753 3445554 33 5566776654
No 47
>3lc0_A Histidyl-tRNA synthetase; tRNA-ligase, aminoacyl-tRNA synthetase, ligase, structural G medical structural genomics of pathogenic protozoa; HET: HIS; 1.80A {Trypanosoma cruzi} PDB: 3hrk_A* 3hri_A
Probab=23.66 E-value=2.2e+02 Score=25.04 Aligned_cols=60 Identities=8% Similarity=-0.019 Sum_probs=40.2
Q ss_pred CCccEEEeccccccchhHHHHHHHHHhcCCCeeEecCCCCCCCCcchHHHHHhhhhcceEEEEeC
Q 046164 30 RPCDVFINHRGTDTKRTIAGLLHDHLSRLRLNPFLDSKNMKPGDRLFDKIDTAIKHCKLGVAVFS 94 (202)
Q Consensus 30 ~~ydVFISy~~~D~r~~fv~~L~~~L~~~Gi~vf~D~~~l~~G~~i~~~i~~aI~~S~i~IvV~S 94 (202)
...||||...+++. ...+-.+...|.+.|++|-+|.. +..+...+..|-+.---.++++.
T Consensus 360 ~~~~v~v~~~~~~~-~~~a~~la~~LR~~Gi~ve~~~~----~~slkkq~k~A~k~ga~~vviiG 419 (456)
T 3lc0_A 360 HVVDDVVIPFDESM-RPHALAVLRRLRDAGRSADIILD----KKKVVQAFNYADRVGAVRAVLVA 419 (456)
T ss_dssp CCEEEEEEESSGGG-HHHHHHHHHHHHHTTCCEEECCS----CCCHHHHHHHHHHTTEEEEEEEC
T ss_pred CCCcEEEEEcCHHH-HHHHHHHHHHHHHCCCeEEEecC----CCCHHHHHHHHHHcCCCEEEEEC
Confidence 35788876655554 34677899999999999988753 23466666666554444555554
No 48
>4e51_A Histidine--tRNA ligase; seattle structural genomics center for infectious disease, S aminoacylation, tRNA activation, charged tRNA; HET: HIS; 2.65A {Burkholderia thailandensis}
Probab=23.55 E-value=1.7e+02 Score=25.76 Aligned_cols=64 Identities=19% Similarity=0.267 Sum_probs=41.8
Q ss_pred CCccEEEeccccccchhHHHHHHHHHhcCCCeeEecCCCCCCCCcchHHHHHhhhhcceEEEEeC
Q 046164 30 RPCDVFINHRGTDTKRTIAGLLHDHLSRLRLNPFLDSKNMKPGDRLFDKIDTAIKHCKLGVAVFS 94 (202)
Q Consensus 30 ~~ydVFISy~~~D~r~~fv~~L~~~L~~~Gi~vf~D~~~l~~G~~i~~~i~~aI~~S~i~IvV~S 94 (202)
...+|+|-.-+++. ...+..+...|++.|++|-+|...-..+..+...+..|-..---.++|+.
T Consensus 353 ~p~~V~Vip~~~~~-~~~A~~ia~~LR~~Gi~ve~d~~~~~~~~sl~kq~~~A~~~g~~~~iiiG 416 (467)
T 4e51_A 353 EGVDVYVVHQGDAA-REQAFIVAERLRDTGLDVILHCSADGAGASFKSQMKRADASGAAFAVIFG 416 (467)
T ss_dssp CCCSEEEEECSHHH-HHHHHHHHHHHHHTTCCEEECCCTTSSCCCHHHHHHHHHHTTCSEEEEEC
T ss_pred CCCeEEEEEcChHH-HHHHHHHHHHHHHcCCeEEEEcccccccCCHHHHHHHHHHcCCCEEEEEC
Confidence 44789876544443 45788999999999999999864101255677777766544333455554
No 49
>1qf6_A THRRS, threonyl-tRNA synthetase; tRNA(Thr), AMP, mRNA, aminoacylati translational regulation, protein/RNA, ligase-RNA complex; HET: H2U AET G7M 5MU PSU AMP; 2.90A {Escherichia coli} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1
Probab=23.28 E-value=2.6e+02 Score=25.71 Aligned_cols=61 Identities=18% Similarity=0.182 Sum_probs=39.7
Q ss_pred CCccEEEeccccccchhHHHHHHHHHhcCCCeeEecCCCCCCCCcchHHHHHhh-hhcceEEEEeCCC
Q 046164 30 RPCDVFINHRGTDTKRTIAGLLHDHLSRLRLNPFLDSKNMKPGDRLFDKIDTAI-KHCKLGVAVFSPR 96 (202)
Q Consensus 30 ~~ydVFISy~~~D~r~~fv~~L~~~L~~~Gi~vf~D~~~l~~G~~i~~~i~~aI-~~S~i~IvV~S~~ 96 (202)
..++|+|---+++ -...+..|++.|++.|++|-+|+++ ..+...+.+|- .+.. .++|+.++
T Consensus 538 aP~qv~vipi~~~-~~~~a~~v~~~L~~~Gi~v~~D~~~----~~~g~kir~a~~~g~p-~~ivvG~~ 599 (642)
T 1qf6_A 538 APVQVVIMNITDS-QSEYVNELTQKLSNAGIRVKADLRN----EKIGFKIREHTLRRVP-YMLVCGDK 599 (642)
T ss_dssp CSSCEEEEESSHH-HHHHHHHHHHHHHTTTCCEEEECCS----SCHHHHHHHHHHTTCS-EEEEECTT
T ss_pred CCceEEEEEeCHH-HHHHHHHHHHHHHhCCCEEEEECCC----CCHHHHHHHHHHcCCC-EEEEECch
Confidence 4588877544333 3578899999999999999999853 34555555543 2333 34445444
No 50
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=22.96 E-value=1.7e+02 Score=20.89 Aligned_cols=19 Identities=5% Similarity=-0.148 Sum_probs=14.6
Q ss_pred HHhhhhcceEEEEeCCCCc
Q 046164 80 DTAIKHCKLGVAVFSPRYC 98 (202)
Q Consensus 80 ~~aI~~S~i~IvV~S~~y~ 98 (202)
...++.++.+|+|++..-.
T Consensus 75 ~~~~~~~d~~i~v~d~~~~ 93 (183)
T 2fu5_C 75 TAYYRGAMGIMLVYDITNE 93 (183)
T ss_dssp CTTTTTCSEEEEEEETTCH
T ss_pred HHHHhcCCEEEEEEECcCH
Confidence 3457899999999986543
No 51
>2j3l_A Prolyl-tRNA synthetase; class II aminoacyl- T synthetase, editing, translation; HET: P5A; 2.3A {Enterococcus faecalis} PDB: 2j3m_A*
Probab=22.62 E-value=1.6e+02 Score=26.46 Aligned_cols=62 Identities=13% Similarity=0.200 Sum_probs=39.5
Q ss_pred CCccEEEeccc-c-ccchhHHHHHHHHHhcCCCeeEecCCCCCCCCcchHHHHHhh-hhcceEEEEeCCC
Q 046164 30 RPCDVFINHRG-T-DTKRTIAGLLHDHLSRLRLNPFLDSKNMKPGDRLFDKIDTAI-KHCKLGVAVFSPR 96 (202)
Q Consensus 30 ~~ydVFISy~~-~-D~r~~fv~~L~~~L~~~Gi~vf~D~~~l~~G~~i~~~i~~aI-~~S~i~IvV~S~~ 96 (202)
..++|+|---+ . +.-...+..|+..|++.|++|-+|+++ ..+...+..|- .+.. .++|+.++
T Consensus 469 ap~~v~vi~~~~~~~~~~~~a~~l~~~Lr~~gi~v~~d~~~----~~~g~k~~~a~~~g~p-~~iivG~~ 533 (572)
T 2j3l_A 469 APFDLHVVQMNVKDEYQTKLSQEVEAMMTEAGYEVLVDDRN----ERAGVKFADADLIGCP-IRITVGKK 533 (572)
T ss_dssp SSCSEEEEESCTTCHHHHHHHHHHHHHHHHTTCCEEEECSS----CCHHHHHHHHHHHCCS-EEEEECGG
T ss_pred CCeEEEEEecCCCCHHHHHHHHHHHHHHHhCCCeEEEeCCC----CCHhHHHHHHHhcCCC-EEEEEccc
Confidence 34889876543 1 223467888999999999999999753 34555665553 3333 34444443
No 52
>1hc7_A Prolyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP + L-proline + tRNA(Pro) AMP + PPI + L-prolyl-tRNA(Pro); 2.43A {Thermus thermophilus} SCOP: c.51.1.1 d.68.5.1 d.104.1.1 PDB: 1h4q_A* 1h4t_A 1h4s_A
Probab=22.37 E-value=63 Score=28.81 Aligned_cols=44 Identities=25% Similarity=0.214 Sum_probs=31.5
Q ss_pred CCccEEEecccc-c---cchhHHHHHHHHHhcCCCeeEecCC-CCCCCC
Q 046164 30 RPCDVFINHRGT-D---TKRTIAGLLHDHLSRLRLNPFLDSK-NMKPGD 73 (202)
Q Consensus 30 ~~ydVFISy~~~-D---~r~~fv~~L~~~L~~~Gi~vf~D~~-~l~~G~ 73 (202)
..++|+|---+. | .-...+..|...|++.|++|-+|++ +-.+|.
T Consensus 286 aP~qV~Iipi~~~~~~~~~~~~a~~l~~~Lr~~Gi~v~~D~~~~~s~g~ 334 (477)
T 1hc7_A 286 APIQVVIVPIYKDESRERVLEAAQGLRQALLAQGLRVHLDDRDQHTPGY 334 (477)
T ss_dssp CSCSEEEEECCCTTTHHHHHHHHHHHHHHHHHTTCCEEECCCSSSCHHH
T ss_pred CCceEEEEEcCCcchHHHHHHHHHHHHHHHHhCCEEEEEeCCCCCCHHH
Confidence 458888765443 2 2346788999999999999999986 434443
No 53
>2i4r_A V-type ATP synthase subunit F; NESG, GR52A, ATP synthesis, hydrolase, structural genomics, protein structure initiative; 2.80A {Archaeoglobus fulgidus} SCOP: c.149.1.1
Probab=22.10 E-value=51 Score=23.25 Aligned_cols=65 Identities=15% Similarity=0.276 Sum_probs=40.8
Q ss_pred HHHhcCCCeeEecCCCCCCCCcchHHHHHhhhhcceEEEEeCCCCcCChhhHHHHHHHHHhcCceecEEEec
Q 046164 53 DHLSRLRLNPFLDSKNMKPGDRLFDKIDTAIKHCKLGVAVFSPRYCESYFCLHELALIMESRKKVIPIFYDV 124 (202)
Q Consensus 53 ~~L~~~Gi~vf~D~~~l~~G~~i~~~i~~aI~~S~i~IvV~S~~y~~S~wc~~EL~~i~~~~~~ViPVfy~v 124 (202)
-.++-.|+..+.+. ..-+.+.+.+.+.+++.++.|++++++.+.. +.+++.... ...++|++..+
T Consensus 22 ~GFrLaGi~~~~~~---~~~ee~~~~~~~l~~~~digIIlIte~ia~~--i~~~i~~~~--~~~~~P~IieI 86 (102)
T 2i4r_A 22 IGFMLAGISDIYEV---TSDEEIVKAVEDVLKRDDVGVVIMKQEYLKK--LPPVLRREI--DEKVEPTFVSV 86 (102)
T ss_dssp HHHHHTTCCCEEEC---CSHHHHHHHHHHHHHCSSEEEEEEEGGGSTT--SCHHHHTTT--TTCCSSEEEEE
T ss_pred HHHHHcCCCcccCC---CCHHHHHHHHHHHhhCCCeEEEEEeHHHHHH--HHHHHHHHH--hCCCccEEEEE
Confidence 35566898877622 2234556677777888899999999998763 222222221 12377877764
No 54
>2zt5_A Glycyl-tRNA synthetase; ligase, AP4A, glycine, ATP, Gly-AMP, aminoacyl-tRNA synthetase, ATP-binding, charcot-marie-tooth disease, disease mutation; HET: B4P; 2.50A {Homo sapiens} PDB: 2pme_A* 2zt6_A* 2zt7_A* 2zt8_A* 2zxf_A* 2pmf_A 2q5h_A 2q5i_A
Probab=21.55 E-value=2.5e+02 Score=26.33 Aligned_cols=62 Identities=8% Similarity=-0.031 Sum_probs=39.9
Q ss_pred CCccEEEeccccc-cchhHHHHHHHHHhcCCCeeEecCCCCCCCCcchHHHHHhhhhcceEEEEeCC
Q 046164 30 RPCDVFINHRGTD-TKRTIAGLLHDHLSRLRLNPFLDSKNMKPGDRLFDKIDTAIKHCKLGVAVFSP 95 (202)
Q Consensus 30 ~~ydVFISy~~~D-~r~~fv~~L~~~L~~~Gi~vf~D~~~l~~G~~i~~~i~~aI~~S~i~IvV~S~ 95 (202)
..++|+|---+.+ .-..++..|...|++.||+|.+|+.+ ..+...+..|=..---.++++.+
T Consensus 558 AP~qV~Vipl~~~~~~~~~A~~l~~~Lr~~Gi~v~~D~~~----~sigkk~k~Ad~~G~p~~IiIG~ 620 (693)
T 2zt5_A 558 APFKCSVLPLSQNQEFMPFVKELSEALTRHGVSHKVDDSS----GSIGRRYARTDEIGVAFGVTIDF 620 (693)
T ss_dssp SSCSEEEEESCCSTTTHHHHHHHHHHHHHTTCCEEECCCC----SCHHHHHHHHHHTTCCEEEEECH
T ss_pred CCCeEEEEEecCcHHHHHHHHHHHHHHHHCCCEEEEECCC----CCHHHHHHHHHHcCCCEEEEEcc
Confidence 3589987655433 23578899999999999999999743 34555665553322224444443
No 55
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=21.19 E-value=1.3e+02 Score=21.86 Aligned_cols=53 Identities=6% Similarity=-0.059 Sum_probs=27.4
Q ss_pred HHHHhhhhcceEEEEeCCCCcCChhhH-HHHHHHHHhcCceecEEEecCCCCcc
Q 046164 78 KIDTAIKHCKLGVAVFSPRYCESYFCL-HELALIMESRKKVIPIFYDVKPSQLQ 130 (202)
Q Consensus 78 ~i~~aI~~S~i~IvV~S~~y~~S~wc~-~EL~~i~~~~~~ViPVfy~v~p~~vr 130 (202)
.....++.++.+|+|++-.-..|---+ .++...++....=+|+++-....|+.
T Consensus 87 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~ 140 (194)
T 3reg_A 87 LRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYIDTAKTVLVGLKVDLR 140 (194)
T ss_dssp TGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTSEEEEEEECGGGC
T ss_pred HhHhhccCCcEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhc
Confidence 334567899999999986644332111 22222333222224555544455554
No 56
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=20.79 E-value=2.2e+02 Score=20.61 Aligned_cols=19 Identities=11% Similarity=0.095 Sum_probs=15.0
Q ss_pred HHHhhhhcceEEEEeCCCC
Q 046164 79 IDTAIKHCKLGVAVFSPRY 97 (202)
Q Consensus 79 i~~aI~~S~i~IvV~S~~y 97 (202)
+...++.++.+|+|++-+-
T Consensus 85 ~~~~~~~~~~~ilv~d~~~ 103 (187)
T 3c5c_A 85 CERYLNWAHAFLVVYSVDS 103 (187)
T ss_dssp THHHHTTCSEEEEEEETTC
T ss_pred HHHHHhhCCEEEEEEECCC
Confidence 4557888999999998763
No 57
>3bpj_A Eukaryotic translation initiation factor 3 subuni; EIF3S1, structural genomics, limited proteolysis, phosphoprotein, protein biosynthesis; 1.85A {Homo sapiens}
Probab=20.48 E-value=1.6e+02 Score=19.71 Aligned_cols=41 Identities=20% Similarity=0.304 Sum_probs=29.1
Q ss_pred chhhhHHHHHHHHHHHHhcCCcccCCCCCHHHHHHHHHHHHHHHhh
Q 046164 138 SRKELQRFSRALEEAKYTVGLTFDSINGDWSEFLTTATDAVINNLI 183 (202)
Q Consensus 138 ~~e~~~~W~~AL~~v~~~~G~~~~~~~~~e~~~i~~Iv~~v~~~L~ 183 (202)
+.+++..++.+|... +..+. . ......|++.+++++...|.
T Consensus 12 Tk~dF~~~~~~l~~k--l~~~~--k-s~~y~~f~~~lir~l~~~L~ 52 (80)
T 3bpj_A 12 SRDDFTEFGKLLKDK--ITQYE--K-SLYYASFLEVLVRDVCISLE 52 (80)
T ss_dssp SHHHHHHHHHHHHHH--HGGGT--T-STTHHHHHHHHHHHHHTTSC
T ss_pred CHHHHHHHHHHHHHH--HHhcc--C-ChhHHHHHHHHHHHHHccCC
Confidence 568899999999654 33322 1 23568999999999887664
No 58
>3zy2_A Putative GDP-fucose protein O-fucosyltransferase; glycosyltransferase, GT-B, catalytic mechanism,; HET: GDP; 1.54A {Caenorhabditis elegans} PDB: 3zy3_A* 3zy4_A* 3zy5_A* 3zy6_A*
Probab=20.37 E-value=84 Score=27.38 Aligned_cols=68 Identities=16% Similarity=0.188 Sum_probs=38.2
Q ss_pred cchhhHHHHHHhhcCCCCCcCCCCCCCCccEEEeccccccchhHHHHHHHHHhcCCCeeEecCCCCCCCCcchHHHHHhh
Q 046164 4 YSSTKSLCRKIIHHRPHHQIQLPITRRPCDVFINHRGTDTKRTIAGLLHDHLSRLRLNPFLDSKNMKPGDRLFDKIDTAI 83 (202)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ydVFISy~~~D~r~~fv~~L~~~L~~~Gi~vf~D~~~l~~G~~i~~~i~~aI 83 (202)
++|.+.++++|.+-...... --|||+- |.. ..+..|.++|.+.++++.. +.+. ...|+.+|
T Consensus 261 lPSle~I~rqIk~~vk~~~l--------ksVFIAT---Da~-~~~~ELk~~L~~~~v~vv~----~~pe---~a~ID~~I 321 (362)
T 3zy2_A 261 SPSKQQILEQIVEKVGSIGA--------KSVFVAS---DKD-HMIDEINEALKPYEIEAHR----QEPD---DMYTSLAI 321 (362)
T ss_dssp SCCHHHHHHHHHHHHHHHTC--------SEEEEEE---SSC-CCHHHHHHHHGGGTCCEEC----CSSC---CHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhcCC--------cEEEEec---CCH-HHHHHHHHHhhccCceEEE----eCCc---hhHHHHHH
Confidence 35666677766655544332 3478874 222 2577888888777776543 2222 23444444
Q ss_pred -hhcceEE
Q 046164 84 -KHCKLGV 90 (202)
Q Consensus 84 -~~S~i~I 90 (202)
.+++.+|
T Consensus 322 ~~~A~~FI 329 (362)
T 3zy2_A 322 MGRADLFV 329 (362)
T ss_dssp HHHSSEEE
T ss_pred HHhCCEee
Confidence 6666665
No 59
>1ati_A Glycyl-tRNA synthetase; protein biosynthesis, ligase, aminoacyl-tRNA SYN; 2.75A {Thermus thermophilus} SCOP: c.51.1.1 d.104.1.1 PDB: 1b76_A* 1ggm_A*
Probab=20.29 E-value=2e+02 Score=25.65 Aligned_cols=59 Identities=10% Similarity=-0.001 Sum_probs=38.3
Q ss_pred CCccEEEecccc-c-cchhHHHHHHHHHhcCC-CeeEecCCCCCCCCcchHHHHHhhh-hcceEEEEeC
Q 046164 30 RPCDVFINHRGT-D-TKRTIAGLLHDHLSRLR-LNPFLDSKNMKPGDRLFDKIDTAIK-HCKLGVAVFS 94 (202)
Q Consensus 30 ~~ydVFISy~~~-D-~r~~fv~~L~~~L~~~G-i~vf~D~~~l~~G~~i~~~i~~aI~-~S~i~IvV~S 94 (202)
..++|+|---+. + .-...+..|+..|++.| ++|.+|+. ..+...+..|=. +... ++|+.
T Consensus 397 aP~~v~Vip~~~~~~~~~~~a~~l~~~Lr~~G~i~v~~D~~-----~sig~k~~~ad~~g~p~-~iivG 459 (505)
T 1ati_A 397 APIKVAVIPLVKNRPEITEYAKRLKARLLALGLGRVLYEDT-----GNIGKAYRRHDEVGTPF-AVTVD 459 (505)
T ss_dssp CSCSEEEEESCSSCHHHHHHHHHHHHHHHTTCSSCEEECCC-----SCHHHHHHHHHHTTCSE-EEEEC
T ss_pred CCceEEEEEcCCccHHHHHHHHHHHHHHhccCCEEEEECCC-----CCHHHHHHHHHHCCCCE-EEEEC
Confidence 458998765443 1 23467889999999999 99999874 245556655533 3333 44443
Done!