Query 046165
Match_columns 287
No_of_seqs 126 out of 719
Neff 7.0
Searched_HMMs 46136
Date Fri Mar 29 09:19:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046165.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/046165hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1607 Protein transporter of 100.0 1.4E-67 3E-72 482.8 25.1 262 12-287 45-306 (318)
2 COG5058 LAG1 Protein transport 100.0 3.2E-63 6.9E-68 447.8 23.5 262 12-287 113-383 (395)
3 smart00724 TLC TRAM, LAG1 and 100.0 1.5E-37 3.3E-42 271.9 16.6 201 64-270 1-204 (205)
4 KOG1608 Protein transporter of 100.0 4.9E-34 1.1E-38 255.8 16.6 197 10-219 74-270 (374)
5 PF03798 TRAM_LAG1_CLN8: TLC d 100.0 3E-30 6.6E-35 222.7 13.2 191 65-264 1-198 (198)
6 PF08390 TRAM1: TRAM1-like pro 98.6 1.1E-07 2.4E-12 68.8 5.5 39 12-50 25-63 (65)
7 KOG4561 Uncharacterized conser 98.4 5.6E-07 1.2E-11 82.4 6.9 130 140-274 138-271 (281)
8 KOG4474 Uncharacterized conser 96.8 0.0088 1.9E-07 54.1 9.7 140 63-212 43-187 (253)
9 PRK13454 F0F1 ATP synthase sub 46.2 72 0.0016 27.4 6.4 41 8-49 20-64 (181)
10 PF14293 YWFCY: YWFCY protein 38.8 26 0.00056 25.0 2.0 13 249-261 21-33 (61)
11 PRK01637 hypothetical protein; 31.6 2E+02 0.0043 26.4 7.3 29 240-268 235-263 (286)
12 PRK14471 F0F1 ATP synthase sub 25.6 1.6E+02 0.0035 24.5 5.2 31 18-48 10-40 (164)
13 PF11755 DUF3311: Protein of u 21.9 3E+02 0.0066 19.6 5.5 9 236-244 28-36 (66)
14 TIGR00353 nrfE c-type cytochro 20.7 9.4E+02 0.02 24.8 10.5 96 62-176 154-253 (576)
15 PF05026 DCP2: Dcp2, box A dom 20.5 1.2E+02 0.0025 23.0 3.0 52 99-150 11-66 (85)
16 PF11658 DUF3260: Protein of u 20.2 49 0.0011 33.3 1.1 81 71-170 41-121 (518)
No 1
>KOG1607 consensus Protein transporter of the TRAM (translocating chain-associating membrane) superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.4e-67 Score=482.81 Aligned_cols=262 Identities=41% Similarity=0.714 Sum_probs=239.6
Q ss_pred CcchhHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcccCCCCcccchhhhhhhhhhhhhhhHHHHHHHhhhhheeeeecCC
Q 046165 12 DAWHFVVPLLFAPGFLVARFFLDRFIFRRLALRLLNKGRPQLKINETTRAKISKCSESMWKLTYYATVEFCILKFACDEP 91 (287)
Q Consensus 12 ~~~D~~~~~~~a~~~~~~R~~~~~~v~~pl~~~l~~~~~~~~~~~~~~~~~~~Kf~e~~w~~~~y~~~~~~g~~v~~~~p 91 (287)
++.|.+.+.+++...+..|......+..|...+.+..+++ +.+||+||+|+++||++++++|++|++++|
T Consensus 45 ~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~----------~~~k~~Es~Wk~~yy~~s~~~glyV~~~~~ 114 (318)
T KOG1607|consen 45 GASDICFLRFYLLFFTFTRLFLMLLVGRPFPLRLNVTADR----------RKKKFCESAWKFLYYLVSWIFGLYVMYHEP 114 (318)
T ss_pred cccchhHHHHHHHHHHHHHHHHHHHHhhhHHHhcCCcCch----------hhhhhHHHHHHHHHHHHHHHHhhhheecch
Confidence 6789999999999999999998888888888887765542 239999999999999999999999999999
Q ss_pred CCCChhhhhcCCCCCccchhHHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHHhhhcceeeeceEEEE
Q 046165 92 WFTDTNLYFKGWPNQELKLPIMLYYMCQCGFYIYSIAALLTWETRRKDFAVMMAHHVITVLLIGYSYFTRFFQIGSIILA 171 (287)
Q Consensus 92 w~~d~~~~w~~~P~~~~~~~~~~yYl~q~afy~~sl~~~~f~e~kRkDf~~m~~HHivTl~Li~~SY~~n~~rvG~~Vl~ 171 (287)
|+.|++++|.+||+++++.++|+||++|.|||.|++..+ +.|++||||+||+.||++|+.||..||..||+|+|.+|++
T Consensus 115 wf~~~k~~w~~yP~~~~~~~~k~~Y~~e~gfY~~~l~al-~~d~~rkDf~~m~vHHvvTl~Li~lSy~~~f~R~G~lil~ 193 (318)
T KOG1607|consen 115 WFYDTKSFWEGYPDQTLPPSFKAYYLLEAGFYIQLLFAL-FLDEKRKDFWEMVVHHVVTLILISLSYVFNFTRVGTLILA 193 (318)
T ss_pred hhcCHHHHHhcCCCCCCCHHHHHHHHHhhHHHHHHHHHH-HhhccccHHHHHHHHHHHHHHHHHHHHHhhhhcccceeee
Confidence 999999999999999999999999999999999998876 5799999999999999999999999999999999999999
Q ss_pred eccchhHHHHHHhhhhhccccchhhHHHHHHHHHHHHHHHHHhhhhhhhhcccchhhhccccCCcchHHHHHHHHHHHHH
Q 046165 172 LHDASDVFMEAAKVFKYSENELGATVIFGLFAISWVILRLIFFPFWVIKCTSYDLQFYLNLSESYDMFIYYMFNTMLLML 251 (287)
Q Consensus 172 lHDisDifL~~aK~~~y~~~~~~~~~~F~~f~~~w~~~Rl~~~P~~il~s~~~~~~~~~~~~~~~~~~~~~~~~~lL~~L 251 (287)
+||+||++||++|+.||.+.+.+++.+|++|+.+|+++|++.+|+++++++..+.... ...++.+.++++|++|.+|
T Consensus 194 lhD~SD~~Le~~K~~nY~~~~~~~~~~F~~F~~~wi~~RL~~~p~wil~st~~~~~~~---~~~~~~~~~~~~~~lL~~L 270 (318)
T KOG1607|consen 194 LHDASDVFLELGKMLNYLQFEAIADFVFVLFAFSWIYTRLIYYPFWILRSTSREDFSL---RQYQPKPSYYFFNCLLLAL 270 (318)
T ss_pred eecchHHHHHHHHHHchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHh---hccCCCchHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999997431111 1123446899999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCcccCCCCCCCC
Q 046165 252 FVFHIYWWVLIFSMIWRQLKSGQLGEDIRSDSEDDD 287 (287)
Q Consensus 252 ~~LhiyWf~lIlk~~~~~i~~G~~~~D~Rsd~e~~~ 287 (287)
|+||+||+++|+||++|++++|+..||+|||||+||
T Consensus 271 qll~i~W~~lI~rm~~r~~~~g~~~eD~Rsd~~s~d 306 (318)
T KOG1607|consen 271 QLLHIYWFYLILRMAYRVIKRGMQGEDIRSDSESED 306 (318)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCccccccccccccc
Confidence 999999999999999999987888999999988775
No 2
>COG5058 LAG1 Protein transporter of the TRAM (translocating chain-associating membrane) superfamily, longevity assurance factor [Intracellular trafficking and secretion]
Probab=100.00 E-value=3.2e-63 Score=447.85 Aligned_cols=262 Identities=27% Similarity=0.438 Sum_probs=233.6
Q ss_pred CcchhHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcccCCCCcccchhhhhhhhhhhhhhhHHHHHHHhhhhheeeeecCC
Q 046165 12 DAWHFVVPLLFAPGFLVARFFLDRFIFRRLALRLLNKGRPQLKINETTRAKISKCSESMWKLTYYATVEFCILKFACDEP 91 (287)
Q Consensus 12 ~~~D~~~~~~~a~~~~~~R~~~~~~v~~pl~~~l~~~~~~~~~~~~~~~~~~~Kf~e~~w~~~~y~~~~~~g~~v~~~~p 91 (287)
|+.|++++++|+++++.+|.+++..|.+|+|+.++++. ++|++||+||+|.++||++++.+|+|+++++|
T Consensus 113 G~~d~~F~lfy~ifftf~ref~md~virpf~l~~~v~s----------~kkikRf~eq~y~~fyy~v~g~~Glyvmrss~ 182 (395)
T COG5058 113 GILDLCFVLFYMIFFTFLREFLMDVVIRPFGLELNVRS----------EKKIKRFCEQMYAIFYYGVSGPFGLYVMRSSP 182 (395)
T ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCC----------HHHHHHHHHHHHHHHHhhccccceEEEEecCc
Confidence 68899999999999999999999999999999998864 57899999999999999999999999999999
Q ss_pred -CCCChhhhhcCCCCCccchhHHHHHHHHHHHHHHH--HHHHHhhhcccchHHHHHHHHHHHHHHHHHhhhcceeeeceE
Q 046165 92 -WFTDTNLYFKGWPNQELKLPIMLYYMCQCGFYIYS--IAALLTWETRRKDFAVMMAHHVITVLLIGYSYFTRFFQIGSI 168 (287)
Q Consensus 92 -w~~d~~~~w~~~P~~~~~~~~~~yYl~q~afy~~s--l~~~~f~e~kRkDf~~m~~HHivTl~Li~~SY~~n~~rvG~~ 168 (287)
|+.|++++|++||+...|+.+|.||++|+|||.|| ++. +..|++||||+||+.|||+|++||..||.+||+|+|+.
T Consensus 183 ~w~fntk~l~etyp~~~~p~lfk~fYliqaafw~qQa~ilv-LqlEkprkD~~elv~HHIVTllLI~lSY~fhftr~GlA 261 (395)
T COG5058 183 LWFFNTKALYETYPVFYNPFLFKAFYLIQAAFWAQQACILV-LQLEKPRKDFKELVFHHIVTLLLIWLSYVFHFTRMGLA 261 (395)
T ss_pred chhhhhHHHHHhCccccCcHHHHHHHHHHHHHHHHHHhhhe-eeecchhhhHHHHHHHHHHHHHHHHHHHHHHHHhccce
Confidence 66799999999999999999999999999999998 443 35799999999999999999999999999999999999
Q ss_pred EEEeccchhHHHHHHhhhhhccccchhhHHHHHHHHHHHHHHHHHhhhhhhhhcccchhhhccc----cCC--cchHHHH
Q 046165 169 ILALHDASDVFMEAAKVFKYSENELGATVIFGLFAISWVILRLIFFPFWVIKCTSYDLQFYLNL----SES--YDMFIYY 242 (287)
Q Consensus 169 Vl~lHDisDifL~~aK~~~y~~~~~~~~~~F~~f~~~w~~~Rl~~~P~~il~s~~~~~~~~~~~----~~~--~~~~~~~ 242 (287)
|...||+||++|+.+|++||++. .+++..|++|+.+|+++|+++. +.|+|+...+.....+. +.+ ...+.+.
T Consensus 262 I~itmDvSD~~Ls~sK~lnYl~~-~l~~~iF~iFv~~wIysRHyln-~kIlw~vlt~~r~~g~~~L~va~~qykcwisl~ 339 (395)
T COG5058 262 IYITMDVSDFFLSLSKTLNYLNS-VLATFIFGIFVFIWIYSRHYLN-LKILWSVLTAFRTIGNFVLDVATQQYKCWISLP 339 (395)
T ss_pred EEEEEeccHHHHHHHHHHHHhhc-hhHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhchhhcCceeeEeechhhccchHHH
Confidence 99999999999999999999998 7799999999999999999776 56888876533222211 111 1234667
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccCCCCCCCC
Q 046165 243 MFNTMLLMLFVFHIYWWVLIFSMIWRQLKSGQLGEDIRSDSEDDD 287 (287)
Q Consensus 243 ~~~~lL~~L~~LhiyWf~lIlk~~~~~i~~G~~~~D~Rsd~e~~~ 287 (287)
++..||.+||.+|+||+.||+||++|++.+| ..+|+||||||||
T Consensus 340 i~~iLl~aLQlvniyWl~lIvRvayRv~~~~-e~~D~RSd~e~ee 383 (395)
T COG5058 340 IVFILLQALQLVNIYWLFLIVRVAYRVIWEG-ELKDERSDDESEE 383 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-cccccccccccCC
Confidence 7888999999999999999999999999655 4799999998876
No 3
>smart00724 TLC TRAM, LAG1 and CLN8 homology domains. Protein domain with at least 5 transmembrane alpha-helices. Lag1p and Lac1p are essential for acyl-CoA-dependent ceramide synthesis, TRAM is a subunit of the translocon and the CLN8 gene is mutated in Northern epilepsy syndrome. The family may possess multiple functions such as lipid trafficking, metabolism, or sensing. Trh homologues possess additional homeobox domains.
Probab=100.00 E-value=1.5e-37 Score=271.91 Aligned_cols=201 Identities=34% Similarity=0.605 Sum_probs=180.4
Q ss_pred hhhhhhhhHHHHHHHhhhhheeeeecCCCCCChhhhhcCCCCCccchhHHHHHHHHHHHHHHHHHHHH-hhhcccchHHH
Q 046165 64 SKCSESMWKLTYYATVEFCILKFACDEPWFTDTNLYFKGWPNQELKLPIMLYYMCQCGFYIYSIAALL-TWETRRKDFAV 142 (287)
Q Consensus 64 ~Kf~e~~w~~~~y~~~~~~g~~v~~~~pw~~d~~~~w~~~P~~~~~~~~~~yYl~q~afy~~sl~~~~-f~e~kRkDf~~ 142 (287)
+|+.|+.||+++|+.+++.|.+++..++|++|+. .++|.++.++..+.||.+|+||+++++.... +.+.+|||++|
T Consensus 1 ~k~~e~~~~~vs~~hs~~~~~~~~~~~~~~~~~~---~~~p~~~~~~~~~~~~~~~~gYfi~d~~~~~~~~~~~~~d~~~ 77 (205)
T smart00724 1 SKFNESSNRLVSYLHSVIAGLYALYSEPWLSDPK---SLYPIQGMSPLAKFYYLFSLGYFIHDLVALLLFQDLKRKDFKE 77 (205)
T ss_pred CchHHHHHHHHHHHHHHHHHHhhhccCCcccCCc---ccCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHHH
Confidence 4889999999999999999999999999988887 7889999999999999999999999998776 67999999999
Q ss_pred HHHHHHHHHHHHHHhhhcceeeeceEEEEeccchhHHHHHHhhhhhcccc--chhhHHHHHHHHHHHHHHHHHhhhhhhh
Q 046165 143 MMAHHVITVLLIGYSYFTRFFQIGSIILALHDASDVFMEAAKVFKYSENE--LGATVIFGLFAISWVILRLIFFPFWVIK 220 (287)
Q Consensus 143 m~~HHivTl~Li~~SY~~n~~rvG~~Vl~lHDisDifL~~aK~~~y~~~~--~~~~~~F~~f~~~w~~~Rl~~~P~~il~ 220 (287)
|++||++|++++..||..|++|.|.+++++||+||||++.+|+++++|.+ .+.+..+++|+++|+++|++.+|..+..
T Consensus 78 ~~~HHv~~~~~~~~~~~~~~~~~~~~~~~l~E~s~~fl~~~~~l~~~~~~~~~~~~~~~~~f~~~f~~~R~~~~p~~~~~ 157 (205)
T smart00724 78 MLVHHIATLLLISLSYVLNFTRLGLLLLLLHELSDPFLHLRKLLNYAGRKKSLLYDVNFVLFAVVFFVFRLILFPFLILT 157 (205)
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhHHHHHHHHHHHHhccccchhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999974 6789999999999999999999997776
Q ss_pred hcccchhhhccccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 046165 221 CTSYDLQFYLNLSESYDMFIYYMFNTMLLMLFVFHIYWWVLIFSMIWRQL 270 (287)
Q Consensus 221 s~~~~~~~~~~~~~~~~~~~~~~~~~lL~~L~~LhiyWf~lIlk~~~~~i 270 (287)
.......... ...+.+.+..+.+++++|++||+||+++|+|++.|.+
T Consensus 158 ~~~~~~~~~~---~~~~~~~~~~~~~~~~~l~~ln~~Wf~~i~~~~~~~~ 204 (205)
T smart00724 158 VTVHYAQAES---GLFPPLLYLLFLLLLLCLQLLNIYWFFLILRMARKLL 204 (205)
T ss_pred HHhhhhhhhc---CCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 6543332211 1123467788889999999999999999999999875
No 4
>KOG1608 consensus Protein transporter of the TRAM (translocating chain-associating membrane) superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=4.9e-34 Score=255.83 Aligned_cols=197 Identities=16% Similarity=0.342 Sum_probs=188.1
Q ss_pred CCCcchhHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcccCCCCcccchhhhhhhhhhhhhhhHHHHHHHhhhhheeeeec
Q 046165 10 QPDAWHFVVPLLFAPGFLVARFFLDRFIFRRLALRLLNKGRPQLKINETTRAKISKCSESMWKLTYYATVEFCILKFACD 89 (287)
Q Consensus 10 ~p~~~D~~~~~~~a~~~~~~R~~~~~~v~~pl~~~l~~~~~~~~~~~~~~~~~~~Kf~e~~w~~~~y~~~~~~g~~v~~~ 89 (287)
+.|++|+..+++|+++++++|+++|+++++++.+|++++|. |..||.||+...+||..|.+||.+++..
T Consensus 74 ~yGikDl~tifFY~l~~IIiHAviQEyvLDKIsKr~hlSK~-----------k~~kFnESgql~~Fy~~S~vwg~~ili~ 142 (374)
T KOG1608|consen 74 YYGIKDLATIFFYMLVAIIIHAVIQEYVLDKISKRLHLSKV-----------KHSKFNESGQLVAFYLFSCVWGFYILIS 142 (374)
T ss_pred eechHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHh-----------hhhhhccCCeeeehhhHHhhhhheeeee
Confidence 45999999999999999999999999999999999999875 7799999999999999999999999999
Q ss_pred CCCCCChhhhhcCCCCCccchhHHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHHhhhcceeeeceEE
Q 046165 90 EPWFTDTNLYFKGWPNQELKLPIMLYYMCQCGFYIYSIAALLTWETRRKDFAVMMAHHVITVLLIGYSYFTRFFQIGSII 169 (287)
Q Consensus 90 ~pw~~d~~~~w~~~P~~~~~~~~~~yYl~q~afy~~sl~~~~f~e~kRkDf~~m~~HHivTl~Li~~SY~~n~~rvG~~V 169 (287)
|.+..|++..|+||||++|+...|+||+.|+|||+|+++++.|+.+||+|......|-+..+++|+++|.+|+.|+|.+.
T Consensus 143 E~yl~~p~~lW~~yPh~~msfq~Kffyi~QlaYwlHafPElYfQK~Kkeeiprqlvyi~l~l~hI~gAYllnl~rlgLvL 222 (374)
T KOG1608|consen 143 EGYLSDPTSLWEGYPHRVMSFQMKFFYISQLAYWLHAFPELYFQKTKKEEIPRQLVYIILHLFHIAGAYLLNLNRLGLVL 222 (374)
T ss_pred cccccChHHHHhcCCCchhhHHHHHHHHHHHHHHHHHChHHHHHHHhhhhccHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeccchhHHHHHHhhhhhccccchhhHHHHHHHHHHHHHHHHHhhhhhh
Q 046165 170 LALHDASDVFMEAAKVFKYSENELGATVIFGLFAISWVILRLIFFPFWVI 219 (287)
Q Consensus 170 l~lHDisDifL~~aK~~~y~~~~~~~~~~F~~f~~~w~~~Rl~~~P~~il 219 (287)
+.+|.+++.+.+.++++.+.+.+ .+..|.+++.+|+..|+...-.-|+
T Consensus 223 l~LhYftellfHi~rlfyf~dek--~~k~fslwa~vF~l~Rl~tliiaVl 270 (374)
T KOG1608|consen 223 LTLHYFTELLFHIARLFYFSDEK--YQKLFSLWAAVFVLGRLGTLIIAVL 270 (374)
T ss_pred HHHHHHHHHHHHHHHHheecccc--hhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999888 4789999999999999987655443
No 5
>PF03798 TRAM_LAG1_CLN8: TLC domain; InterPro: IPR006634 TLC is a protein domain with at least 5 transmembrane alpha-helices. Lag1p and Lac1p are essential for acyl-CoA-dependent ceramide synthesis [], TRAM is a subunit of the translocon and the CLN8 gene is mutated in Northern epilepsy syndrome. Proteins containing this domain may possess multiple functions such as lipid trafficking, metabolism, or sensing. Trh homologues possess additional homeobox domains [].; GO: 0016021 integral to membrane
Probab=99.97 E-value=3e-30 Score=222.75 Aligned_cols=191 Identities=25% Similarity=0.517 Sum_probs=163.7
Q ss_pred hhhhhhhHHHHHHHhhhhheeeeecCCCCCChhhhhcCCCCCcc---chhHHHHHHHHHHHHHHHHHHHHhhhcccchHH
Q 046165 65 KCSESMWKLTYYATVEFCILKFACDEPWFTDTNLYFKGWPNQEL---KLPIMLYYMCQCGFYIYSIAALLTWETRRKDFA 141 (287)
Q Consensus 65 Kf~e~~w~~~~y~~~~~~g~~v~~~~pw~~d~~~~w~~~P~~~~---~~~~~~yYl~q~afy~~sl~~~~f~e~kRkDf~ 141 (287)
||.|+++.++++++++++|++++.++| ++|.+||+.+. +...+.++..++||+++++...+..+++|+|++
T Consensus 1 ~~~~~~~s~~h~~~~~~~~~~~l~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~gYf~~Dl~~~~~~~~~~~d~~ 74 (198)
T PF03798_consen 1 KWNNRVVSFVHAIVSSIWGLYILLNDP------ELWSDWPDDPWYYSSWLVKFYYAFSLGYFLYDLIVMLLYYRKRGDFW 74 (198)
T ss_pred CHhHHHHHHHHHHHHHHHHHHHHhcCc------HHhhhcccCccCCccHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhh
Confidence 789999999999999999999999998 77777777654 458899999999999999998887788888999
Q ss_pred HHHHHHHHHHHHHHHhhhcceeeeceEEEEeccchhHHHHHHhhhhhc-cc-cchhhHHH--HHHHHHHHHHHHHHhhhh
Q 046165 142 VMMAHHVITVLLIGYSYFTRFFQIGSIILALHDASDVFMEAAKVFKYS-EN-ELGATVIF--GLFAISWVILRLIFFPFW 217 (287)
Q Consensus 142 ~m~~HHivTl~Li~~SY~~n~~rvG~~Vl~lHDisDifL~~aK~~~y~-~~-~~~~~~~F--~~f~~~w~~~Rl~~~P~~ 217 (287)
+|++||++|+.++..||..|+.|.|++++++||+|||||+..|++++. ++ +......+ ++|+++|+.+|++.+|..
T Consensus 75 ~~~~HH~~~l~~~~~~~~~~~~~~~~~~~ll~E~st~fl~~r~~l~~~~~~~~~~~~~~~~~~~f~~~f~~~Ri~~~~~~ 154 (198)
T PF03798_consen 75 EMLLHHVVTLVLFYFSYFYNFGRFGIVVFLLHEISTPFLNLRWFLKYLGGYSKKSSLYRFNGVLFAVTFFVFRIVLFPYL 154 (198)
T ss_pred HhhHHHHHHHHHHHHhhHHHHhhHHHHHHHHHhcccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999 55 45567777 999999999999999987
Q ss_pred hhhhcccchhhhccccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 046165 218 VIKCTSYDLQFYLNLSESYDMFIYYMFNTMLLMLFVFHIYWWVLIFS 264 (287)
Q Consensus 218 il~s~~~~~~~~~~~~~~~~~~~~~~~~~lL~~L~~LhiyWf~lIlk 264 (287)
+.+...... +. + ....+.+....+.+++.+|++||+||+++|+|
T Consensus 155 ~~~~~~~~~-~~-~-~~~~~~~~~~~~~~~~~~l~~Ln~~W~~~i~r 198 (198)
T PF03798_consen 155 IYWVYWDVW-PL-P-LWKVPWPVPWIFLVLLLVLFVLNIYWFYLILR 198 (198)
T ss_pred HHHHHHHhc-cc-c-ccccchHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 766542221 10 0 11112356778889999999999999999986
No 6
>PF08390 TRAM1: TRAM1-like protein; InterPro: IPR013599 This family comprises sequences that are similar to human TRAM1 (Q15629 from SWISSPROT). This is a transmembrane protein of the endoplasmic reticulum, thought to be involved in the membrane transfer of secretory proteins []. The region featured in this family is found N-terminal to the longevity-assurance protein region (IPR005547 from INTERPRO).
Probab=98.58 E-value=1.1e-07 Score=68.82 Aligned_cols=39 Identities=18% Similarity=0.199 Sum_probs=37.6
Q ss_pred CcchhHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcccCC
Q 046165 12 DAWHFVVPLLFAPGFLVARFFLDRFIFRRLALRLLNKGR 50 (287)
Q Consensus 12 ~~~D~~~~~~~a~~~~~~R~~~~~~v~~pl~~~l~~~~~ 50 (287)
|++|++++++|+++++++|+++|++|++|+||+++++|+
T Consensus 25 G~~D~~fV~fy~i~~t~lRa~~m~yvl~Plar~~gi~k~ 63 (65)
T PF08390_consen 25 GWDDLYFVFFYIIVFTFLRAFLMEYVLDPLARKLGISKK 63 (65)
T ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCC
Confidence 889999999999999999999999999999999999875
No 7
>KOG4561 consensus Uncharacterized conserved protein, contains TBC domain [Signal transduction mechanisms; General function prediction only]
Probab=98.41 E-value=5.6e-07 Score=82.39 Aligned_cols=130 Identities=14% Similarity=0.206 Sum_probs=84.9
Q ss_pred HHHHHHHHHHHHHHHHHhhhcceeeeceEEEEeccchhHHHHHHhhhhhccccc--hhhHHHHHHHHHHHHHHHHHhhhh
Q 046165 140 FAVMMAHHVITVLLIGYSYFTRFFQIGSIILALHDASDVFMEAAKVFKYSENEL--GATVIFGLFAISWVILRLIFFPFW 217 (287)
Q Consensus 140 f~~m~~HHivTl~Li~~SY~~n~~rvG~~Vl~lHDisDifL~~aK~~~y~~~~~--~~~~~F~~f~~~w~~~Rl~~~P~~ 217 (287)
-.+|++||++..+.++..-.-.+-.-=...+++-..|-+|+.....+.-++.+. .-.+.-.+..++|++.|+..+|.
T Consensus 138 ~~~fviHh~~s~~~v~~~~~~~~g~y~~~~~L~~ElSTPFvnlrw~L~~~~~k~Sl~~~vNG~lm~~~F~v~RIll~~~- 216 (281)
T KOG4561|consen 138 GIEFVIHHIASLVFVGCLLRRGVGQYYAGTFLMAELSTPFVNLRWFLDKAGQKKSLFYKVNGLLLLVVFFVARILLWPY- 216 (281)
T ss_pred CeeEEeeHHHHhhhheeeEecCccceeeeeeheeecCCceeeHHHHHHHcCcccchHHHhhhHHHHHHHHHHHHHHHHH-
Confidence 469999999992222111111111111556778899999999999998887653 44566778899999999998886
Q ss_pred hhhhcc--cchhhhccccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 046165 218 VIKCTS--YDLQFYLNLSESYDMFIYYMFNTMLLMLFVFHIYWWVLIFSMIWRQLKSGQ 274 (287)
Q Consensus 218 il~s~~--~~~~~~~~~~~~~~~~~~~~~~~lL~~L~~LhiyWf~lIlk~~~~~i~~G~ 274 (287)
+-+... .+.-... ..|.......++.=.+|.+||+|||..|.|.+.|.+.+++
T Consensus 217 ~~~~~~~~~~~~~~~----~~~~~~~~~~l~~~~~L~v~Nl~Wf~km~~ga~K~~~~~~ 271 (281)
T KOG4561|consen 217 MGWHYYWRYQGLVLN----QVPPFLPLFLLGLNALLLVLNLYWFSKMVRGALKVLKKAK 271 (281)
T ss_pred HHHHHHHHHhhhhhh----hhchhHhHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccc
Confidence 343332 2221111 1221223344455567889999999999999999997554
No 8
>KOG4474 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.85 E-value=0.0088 Score=54.11 Aligned_cols=140 Identities=17% Similarity=0.278 Sum_probs=90.3
Q ss_pred hhhhhhhhhHHHHHHHhhhhheeeeecCCC-CCChhhhhcCCCCCccchhHHHHHHHHHHHHHHHHHHHHhhhcccchHH
Q 046165 63 ISKCSESMWKLTYYATVEFCILKFACDEPW-FTDTNLYFKGWPNQELKLPIMLYYMCQCGFYIYSIAALLTWETRRKDFA 141 (287)
Q Consensus 63 ~~Kf~e~~w~~~~y~~~~~~g~~v~~~~pw-~~d~~~~w~~~P~~~~~~~~~~yYl~q~afy~~sl~~~~f~e~kRkDf~ 141 (287)
.+||....=.++.-+++..+..+.+.+.|- .-|+..++.. .-..--+..+||.++++.-.. .+++-.+.+
T Consensus 43 ~~r~~n~~VSl~HS~Isg~~a~~~l~~~~~~~~~~~~~~s~--------~~~~l~~fS~gYfiyD~vDm~-~~~~s~~s~ 113 (253)
T KOG4474|consen 43 KKRFSNLTVSLLHSTISGLWALLSLLYDPEMVDDPITYHSL--------SAYQLLLFSAGYFIYDLVDML-MNEQSELSW 113 (253)
T ss_pred chhhhhhHHHHHHHHHHHHHHHHHHHhCcccccCHHHHHhh--------hhHHHHHHHHHHHHHHHHHHH-hcchhhhhH
Confidence 356666666666667777777777776662 2234333321 112233568899999998765 455577899
Q ss_pred HHHHHHHHHHHHHHHh-hhcceeeeceEEEEeccchhHHHHHHhhhhhccccch---hhHHHHHHHHHHHHHHHH
Q 046165 142 VMMAHHVITVLLIGYS-YFTRFFQIGSIILALHDASDVFMEAAKVFKYSENELG---ATVIFGLFAISWVILRLI 212 (287)
Q Consensus 142 ~m~~HHivTl~Li~~S-Y~~n~~rvG~~Vl~lHDisDifL~~aK~~~y~~~~~~---~~~~F~~f~~~w~~~Rl~ 212 (287)
|...||++++.=.... +...+.- ++....++.+++|||+.-++++-.|.++. -.+.=.+=.++++..|++
T Consensus 114 e~LvHH~v~i~aF~~~lf~~~~~~-~~~~~llmEv~SiFLH~R~il~l~g~s~~~~~~rv~v~lN~i~f~~fR~~ 187 (253)
T KOG4474|consen 114 EYLVHHVVCIIAFVLGLFYSKFLG-YVVAALLMEVSSIFLHLRSILKLAGLSTTLPSFRVVVYLNLITFFFFRLI 187 (253)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhhhHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHHHHHHhc
Confidence 9999999987632222 2222222 35667789999999999999998876542 222223335678888883
No 9
>PRK13454 F0F1 ATP synthase subunit B'; Provisional
Probab=46.19 E-value=72 Score=27.38 Aligned_cols=41 Identities=17% Similarity=0.257 Sum_probs=27.1
Q ss_pred CCCCCcchhH----HHHHHHHHHHHHHHHHHHHhHHHHHHHhcccC
Q 046165 8 SIQPDAWHFV----VPLLFAPGFLVARFFLDRFIFRRLALRLLNKG 49 (287)
Q Consensus 8 ~~~p~~~D~~----~~~~~a~~~~~~R~~~~~~v~~pl~~~l~~~~ 49 (287)
+|.|++ |.. .++...+.++++=+++.+++++|+.+.+.-++
T Consensus 20 ~gmp~l-d~~t~~~q~~~~lI~F~iL~~ll~k~l~~PI~~~l~~R~ 64 (181)
T PRK13454 20 PGMPQL-DFSTFPNQIFWLLVTLVAIYFVLTRVALPRIGAVLAERQ 64 (181)
T ss_pred CCCCCC-cHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555 332 33444666677777888999999999886543
No 10
>PF14293 YWFCY: YWFCY protein
Probab=38.83 E-value=26 Score=24.97 Aligned_cols=13 Identities=31% Similarity=1.193 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHH
Q 046165 249 LMLFVFHIYWWVL 261 (287)
Q Consensus 249 ~~L~~LhiyWf~l 261 (287)
.++.++|+||+..
T Consensus 21 I~~l~ih~Y~~CY 33 (61)
T PF14293_consen 21 ILFLVIHFYWFCY 33 (61)
T ss_pred HHHHHHHHHHHHH
Confidence 4567889999963
No 11
>PRK01637 hypothetical protein; Reviewed
Probab=31.62 E-value=2e+02 Score=26.36 Aligned_cols=29 Identities=10% Similarity=0.355 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 046165 240 IYYMFNTMLLMLFVFHIYWWVLIFSMIWR 268 (287)
Q Consensus 240 ~~~~~~~lL~~L~~LhiyWf~lIlk~~~~ 268 (287)
.|-.+.++...|.-+++.|..+++-..++
T Consensus 235 ~YGslg~vi~lllWlyl~~~ilL~Gaeln 263 (286)
T PRK01637 235 IYGALAVIPILFVWVYLSWCIVLLGAEIT 263 (286)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566677778888899999888866554
No 12
>PRK14471 F0F1 ATP synthase subunit B; Provisional
Probab=25.58 E-value=1.6e+02 Score=24.48 Aligned_cols=31 Identities=13% Similarity=0.248 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHhccc
Q 046165 18 VPLLFAPGFLVARFFLDRFIFRRLALRLLNK 48 (287)
Q Consensus 18 ~~~~~a~~~~~~R~~~~~~v~~pl~~~l~~~ 48 (287)
..++-++.++++=+++.+++++|+.+.+.-+
T Consensus 10 ~~~~~~i~Flil~~ll~~~l~~pi~~~l~~R 40 (164)
T PRK14471 10 LFFWQTILFLILLLLLAKFAWKPILGAVKER 40 (164)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 3444456666667778899999999887543
No 13
>PF11755 DUF3311: Protein of unknown function (DUF3311); InterPro: IPR021741 This is a family of short bacterial proteins of unknwon function.
Probab=21.90 E-value=3e+02 Score=19.57 Aligned_cols=9 Identities=11% Similarity=0.600 Sum_probs=3.9
Q ss_pred cchHHHHHH
Q 046165 236 YDMFIYYMF 244 (287)
Q Consensus 236 ~~~~~~~~~ 244 (287)
-|+..+|.+
T Consensus 28 ~Pff~~w~~ 36 (66)
T PF11755_consen 28 MPFFYWWQL 36 (66)
T ss_pred cHHHHHHHH
Confidence 354444443
No 14
>TIGR00353 nrfE c-type cytochrome biogenesis protein CcmF. The product of this gene is required for the biogenesis of C-type cytochromes. This gene is thought to have eleven transmembrane helices. Disruption of this gene in Paracoccus denitrificans, encoding a putative transporter, results in formation of an unstable apocytochrome c and deficiency in siderophore production.
Probab=20.66 E-value=9.4e+02 Score=24.76 Aligned_cols=96 Identities=14% Similarity=0.196 Sum_probs=45.1
Q ss_pred hhhhhhhhhhHHHHHHHhh--hhheee-eecCCCCCChhhhhcCCCCCccchhHHHHHHHHHHHHHHHHHHHHhhhcccc
Q 046165 62 KISKCSESMWKLTYYATVE--FCILKF-ACDEPWFTDTNLYFKGWPNQELKLPIMLYYMCQCGFYIYSIAALLTWETRRK 138 (287)
Q Consensus 62 ~~~Kf~e~~w~~~~y~~~~--~~g~~v-~~~~pw~~d~~~~w~~~P~~~~~~~~~~yYl~q~afy~~sl~~~~f~e~kRk 138 (287)
..+++..-+|-+.--++.+ .|+... -+..-|.|||++-|.= +- .++..| ++|+... .+||.
T Consensus 154 ~~~~~~~~g~~flt~Gi~~G~~WAy~~l~WGg~W~WDPvE~~Sl---------i~--WL~y~a-~lH~~~~----~~~rg 217 (576)
T TIGR00353 154 ICRPWTLAAWSFLTLGIVLGSWWAYYELGWGGWWFWDPVENASL---------MP--WLSGTA-LLHSLSV----TEQRG 217 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccccccCCCcCccHHHHHHH---------HH--HHHHHH-HHHHhhh----hhhhh
Confidence 3455666665554333322 222221 2345688998876631 11 122333 6666531 23332
Q ss_pred hHHHHHHHHHHHHHHHHHh-hhcceeeeceEEEEeccch
Q 046165 139 DFAVMMAHHVITVLLIGYS-YFTRFFQIGSIILALHDAS 176 (287)
Q Consensus 139 Df~~m~~HHivTl~Li~~S-Y~~n~~rvG~~Vl~lHDis 176 (287)
.... .. .+..++...+| +..|++|=|++ --.|-.+
T Consensus 218 ~~~a-~~-~~l~~~~~~~~~~gt~~~rsg~l-~svH~f~ 253 (576)
T TIGR00353 218 SFKA-WT-LLLAILAFSLSLLGTFIVRSGIL-VSVHAFA 253 (576)
T ss_pred HHHH-HH-HHHHHHHHHHHHHHHHHhccCCC-ccccccc
Confidence 2211 11 23333333333 35678888877 4477666
No 15
>PF05026 DCP2: Dcp2, box A domain; InterPro: IPR007722 This presumed domain is always found to the N-terminal side of the NUDIX hydrolase domain IPR000086 from INTERPRO. This domain appears to be specific to mRNA decapping protein 2 P53550 from SWISSPROT and its close homologues. This region has been termed Box A [].; GO: 0003723 RNA binding, 0016787 hydrolase activity, 0030145 manganese ion binding; PDB: 2QKM_H 2A6T_B 2QKL_B.
Probab=20.54 E-value=1.2e+02 Score=23.03 Aligned_cols=52 Identities=17% Similarity=0.154 Sum_probs=32.8
Q ss_pred hhcCCCCCccchhHHHHHHHHHHHHHHHHHHHH----hhhcccchHHHHHHHHHHH
Q 046165 99 YFKGWPNQELKLPIMLYYMCQCGFYIYSIAALL----TWETRRKDFAVMMAHHVIT 150 (287)
Q Consensus 99 ~w~~~P~~~~~~~~~~yYl~q~afy~~sl~~~~----f~e~kRkDf~~m~~HHivT 150 (287)
+-.+-|....+...+.++.+|-|+|.+.=+... .-..+-|+|.+++.+|+-.
T Consensus 11 FI~N~P~eel~~~eRl~FqiE~AhWfY~Df~~~~~p~Lp~~~lk~F~~~if~~cp~ 66 (85)
T PF05026_consen 11 FILNLPEEELSSFERLCFQIEEAHWFYEDFYREQNPSLPSMSLKEFAKQIFQHCPL 66 (85)
T ss_dssp HTTTS-CCCST-HHHHHHHHHHHHHHHHHTTTTTTTTS----HHHHHHHHHTT-GH
T ss_pred HHhcCCHHHHccHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCHHHHHHHHHHHCHh
Confidence 345668888888999999999999997422100 0112357899999998543
No 16
>PF11658 DUF3260: Protein of unknown function (DUF3260); InterPro: IPR017744 This protein was identified by the partial phylogenetic profiling algorithm [] as part of the system for cellulose biosynthesis in bacteria, and in fact is found in cellulose biosynthesis gene regions. The protein was designated YhjU in Salmonella enteritidis, where disruption of its gene disrupts cellulose biosynthesis and biofilm formation [].
Probab=20.15 E-value=49 Score=33.27 Aligned_cols=81 Identities=9% Similarity=0.163 Sum_probs=53.3
Q ss_pred hHHHHHHHhhhhheeeeecCCCCCChhhhhcCCCCCccchhHHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHH
Q 046165 71 WKLTYYATVEFCILKFACDEPWFTDTNLYFKGWPNQELKLPIMLYYMCQCGFYIYSIAALLTWETRRKDFAVMMAHHVIT 150 (287)
Q Consensus 71 w~~~~y~~~~~~g~~v~~~~pw~~d~~~~w~~~P~~~~~~~~~~yYl~q~afy~~sl~~~~f~e~kRkDf~~m~~HHivT 150 (287)
|+-+=+.+....|+..++++.|++..+.+|...-+. . -.+.+|++ ++..- |. -++|+. .+.
T Consensus 41 l~~~R~~iAipig~aLly~DswLPp~~rl~~q~~ql---~------~FS~~Yl~-EL~~R-fi------n~~ml~--a~~ 101 (518)
T PF11658_consen 41 LRRLRHWIAIPIGIALLYHDSWLPPFDRLWSQAGQL---A------GFSFSYLL-ELAGR-FI------NWQMLG--AAF 101 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHH---h------cCCHHHHH-HHHHh-cC------CHHHHH--HHH
Confidence 444456678899999999999999999998753321 0 12345555 44321 11 267766 344
Q ss_pred HHHHHHhhhcceeeeceEEE
Q 046165 151 VLLIGYSYFTRFFQIGSIIL 170 (287)
Q Consensus 151 l~Li~~SY~~n~~rvG~~Vl 170 (287)
+.++++-+..++.|++++|+
T Consensus 102 vl~v~y~~ls~wiRvttfvv 121 (518)
T PF11658_consen 102 VLLVAYLFLSQWIRVTTFVV 121 (518)
T ss_pred HHHHHHHHHhhhhhhHHHHH
Confidence 56667777888889887764
Done!