Query 046165
Match_columns 287
No_of_seqs 126 out of 719
Neff 7.0
Searched_HMMs 29240
Date Mon Mar 25 16:13:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046165.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/046165hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2pjx_C Syntaxin-4; membrane tr 18.0 40 0.0014 18.9 0.8 9 278-286 12-20 (29)
2 1b9u_A Protein (ATP synthase); 14.0 2E+02 0.0069 16.4 4.6 26 20-45 8-33 (34)
3 1ej5_A WAsp, wiskott-aldrich s 13.0 68 0.0023 24.3 1.1 11 277-287 94-104 (107)
4 2knc_A Integrin alpha-IIB; tra 6.4 6.1E+02 0.021 16.6 6.1 15 240-254 12-26 (54)
5 2qkl_B SPAC19A8.12 protein, SP 5.9 5E+02 0.017 18.9 3.5 56 98-153 18-77 (95)
6 2a6t_A SPAC19A8.12; alpha/beta 5.5 5.1E+02 0.017 22.1 3.9 54 98-151 23-80 (271)
7 2ql9_B Caspase-7; cysteine pro 5.1 4E+02 0.014 19.0 2.5 27 119-145 31-57 (97)
8 2dko_B Caspase-3; low barrier 4.7 4.4E+02 0.015 19.1 2.5 26 120-145 38-63 (103)
9 2kih_A Matrix protein 2; S31N, 4.5 7.1E+02 0.024 15.2 3.1 28 173-212 3-30 (43)
10 3cx5_I Cytochrome B-C1 complex 4.4 1.3E+02 0.0043 20.7 -0.8 16 266-281 38-53 (65)
No 1
>2pjx_C Syntaxin-4; membrane trafficking, SM protein, snare proteins, endocytosis/exocytosis complex; 3.15A {Mus musculus}
Probab=18.05 E-value=40 Score=18.87 Aligned_cols=9 Identities=56% Similarity=0.663 Sum_probs=6.2
Q ss_pred ccCCCCCCC
Q 046165 278 DIRSDSEDD 286 (287)
Q Consensus 278 D~Rsd~e~~ 286 (287)
|.-||||||
T Consensus 12 dnisddede 20 (29)
T 2pjx_C 12 DNISDDEDE 20 (29)
T ss_pred CCCCCccce
Confidence 666777775
No 2
>1b9u_A Protein (ATP synthase); membrane protein, hydrolase; HET: GMA; NMR {Synthetic} SCOP: j.35.1.1
Probab=14.04 E-value=2e+02 Score=16.40 Aligned_cols=26 Identities=19% Similarity=0.323 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHh
Q 046165 20 LLFAPGFLVARFFLDRFIFRRLALRL 45 (287)
Q Consensus 20 ~~~a~~~~~~R~~~~~~v~~pl~~~l 45 (287)
+.-++.++++=.++.+++++|+.+-+
T Consensus 8 ~~~~i~Flil~~~l~kf~~~Pi~~~l 33 (34)
T 1b9u_A 8 LGQAIAFVLFVLFCMKYVWPPLMAAI 33 (34)
T ss_dssp HHHHHHHHHHHHHHHHHTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34455677777888999999998754
No 3
>1ej5_A WAsp, wiskott-aldrich syndrome protein; alpha helix, beta-hairpin turn, blood clotting; NMR {Homo sapiens} SCOP: a.68.1.1 PDB: 1t84_A* 2k42_A
Probab=12.96 E-value=68 Score=24.31 Aligned_cols=11 Identities=36% Similarity=0.576 Sum_probs=8.5
Q ss_pred cccCCCCCCCC
Q 046165 277 EDIRSDSEDDD 287 (287)
Q Consensus 277 ~D~Rsd~e~~~ 287 (287)
+=|+|||||||
T Consensus 94 ~~i~s~~e~~~ 104 (107)
T 1ej5_A 94 RAIHSSDEGED 104 (107)
T ss_dssp SCCCCCCSSCC
T ss_pred hcccCCCcccc
Confidence 35899988875
No 4
>2knc_A Integrin alpha-IIB; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=6.37 E-value=6.1e+02 Score=16.56 Aligned_cols=15 Identities=20% Similarity=0.445 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHHH
Q 046165 240 IYYMFNTMLLMLFVF 254 (287)
Q Consensus 240 ~~~~~~~lL~~L~~L 254 (287)
.|.+..+.+..|.+|
T Consensus 12 ~wiIi~svl~GLllL 26 (54)
T 2knc_A 12 IWWVLVGVLGGLLLL 26 (54)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHH
Confidence 444444555555444
No 5
>2qkl_B SPAC19A8.12 protein, SPBC3B9.21 protein; protein-protein complex, hydrolase; 2.33A {Schizosaccharomyces pombe} SCOP: a.242.1.1
Probab=5.92 E-value=5e+02 Score=18.90 Aligned_cols=56 Identities=11% Similarity=0.062 Sum_probs=38.6
Q ss_pred hhhcCCCCCccchhHHHHHHHHHHHHHHHHHHHH----hhhcccchHHHHHHHHHHHHHH
Q 046165 98 LYFKGWPNQELKLPIMLYYMCQCGFYIYSIAALL----TWETRRKDFAVMMAHHVITVLL 153 (287)
Q Consensus 98 ~~w~~~P~~~~~~~~~~yYl~q~afy~~sl~~~~----f~e~kRkDf~~m~~HHivTl~L 153 (287)
.+-.+=|....+...+.++.+|-|+|.+.=+... .-.-+-|||.+++.+|+-.+.-
T Consensus 18 RFIiN~P~eel~s~eRl~FqiEeA~WfY~Df~~~~np~Lp~~~lk~F~~~if~~cp~L~~ 77 (95)
T 2qkl_B 18 RFILNLPAEEQSSVERLCFQIEQAHWFYEDFIRAQNDQLPSLGLRVFSAKLFAHCPLLWK 77 (95)
T ss_dssp HHTTTCCGGGSSCHHHHHHHHHHHHHHHHHTTTTTCTTSCCCCHHHHHHHHHHHCTHHHH
T ss_pred HHHHcCCHHHhhhHHHHHHHHHhheeehcccccccCCCCCCCcHHHHHHHHHHhCHHHHh
Confidence 3445778888888899999999999996421100 0012247899999999766553
No 6
>2a6t_A SPAC19A8.12; alpha/beta/alpha, RNA binding protein,hydrolase; 2.50A {Schizosaccharomyces pombe} SCOP: a.242.1.1 d.113.1.7 PDB: 2qkm_B*
Probab=5.51 E-value=5.1e+02 Score=22.09 Aligned_cols=54 Identities=11% Similarity=0.090 Sum_probs=38.7
Q ss_pred hhhcCCCCCccchhHHHHHHHHHHHHHHHHHHHHh----hhcccchHHHHHHHHHHHH
Q 046165 98 LYFKGWPNQELKLPIMLYYMCQCGFYIYSIAALLT----WETRRKDFAVMMAHHVITV 151 (287)
Q Consensus 98 ~~w~~~P~~~~~~~~~~yYl~q~afy~~sl~~~~f----~e~kRkDf~~m~~HHivTl 151 (287)
.+-.+-|..+.....+.++.+|-|+|.+.=+...- -.-..++|...+.||.-.+
T Consensus 23 rfi~n~p~~~~~~~~~~~f~ie~a~wfy~d~~~~~~~~~p~~~~~~f~~~~f~~~~~l 80 (271)
T 2a6t_A 23 RFILNLPAEEQSSVERLCFQIEQAHWFYEDFIRAQNDQLPSLGLRVFSAKLFAHCPLL 80 (271)
T ss_dssp HHTTTSCGGGTTCHHHHHHHHHHHHHHHHHTHHHHCSSSCCCCHHHHHHHHHTTCHHH
T ss_pred HHhhcCCHHHhccHHHHHHHHHHHHHHHHHhhhhcccCCCcccHHHHHHHHhhhhhhh
Confidence 44557787778888999999999999975331110 0134788999999998743
No 7
>2ql9_B Caspase-7; cysteine protease, apoptosis, thiol protease, zymogen, hydro hydrolase inhibitor complex; HET: CIT; 2.14A {Homo sapiens} PDB: 2ql7_B* 2ql5_B* 2qlb_B* 2qlf_B 2qlj_B* 3edr_B 3ibc_B 3ibf_B 1i51_B
Probab=5.08 E-value=4e+02 Score=19.00 Aligned_cols=27 Identities=4% Similarity=0.309 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHhhhcccchHHHHHH
Q 046165 119 QCGFYIYSIAALLTWETRRKDFAVMMA 145 (287)
Q Consensus 119 q~afy~~sl~~~~f~e~kRkDf~~m~~ 145 (287)
+.|+|+|++...+-...++.|..+|+.
T Consensus 31 ~GSwfIq~Lc~~l~~~~~~~dl~~ilt 57 (97)
T 2ql9_B 31 RGSWFVQALCSILEEHGKDLEIMQILT 57 (97)
T ss_dssp TEEHHHHHHHHHHHHHTTTSCHHHHHH
T ss_pred CCCeeHHHHHHHHHHhCCCCcHHHHHH
Confidence 457788888765432356778877765
No 8
>2dko_B Caspase-3; low barrier hydrogen bond, caspase, drug design, radiation D tetrahedral intermediate, protease; 1.06A {Homo sapiens} PDB: 2c2k_B* 2c2m_B* 2c2o_B* 2c1e_B* 2cdr_B* 2cnk_B* 2cnl_B* 2cnn_B* 2cno_B* 2cjy_B 1pau_B 1re1_B* 1rhk_B* 1rhm_B* 1rhq_B* 1rhr_B* 1rhu_B* 1rhj_B* 1i3o_B* 3edq_B ...
Probab=4.70 E-value=4.4e+02 Score=19.12 Aligned_cols=26 Identities=19% Similarity=0.419 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHhhhcccchHHHHHH
Q 046165 120 CGFYIYSIAALLTWETRRKDFAVMMA 145 (287)
Q Consensus 120 ~afy~~sl~~~~f~e~kRkDf~~m~~ 145 (287)
.|+|+|++...+-...++.|..+|+.
T Consensus 38 GSwfIq~Lc~~l~~~~~~~dl~~ilT 63 (103)
T 2dko_B 38 GSWFIQSLCAMLKQYADKLEFMHILT 63 (103)
T ss_dssp EEHHHHHHHHHHHHHTTTSCHHHHHH
T ss_pred CCeeHHHHHHHHHHhCCcccHHHHHH
Confidence 57788888765432356788888774
No 9
>2kih_A Matrix protein 2; S31N, proton channel, cell membrane, disulfide bond, hydrogen ION transport, ION transport, ionic channel, membrane; NMR {Influenza a virus} PDB: 2rlf_A* 2l0j_A 2kwx_A
Probab=4.54 E-value=7.1e+02 Score=15.23 Aligned_cols=28 Identities=39% Similarity=0.559 Sum_probs=17.6
Q ss_pred ccchhHHHHHHhhhhhccccchhhHHHHHHHHHHHHHHHH
Q 046165 173 HDASDVFMEAAKVFKYSENELGATVIFGLFAISWVILRLI 212 (287)
Q Consensus 173 HDisDifL~~aK~~~y~~~~~~~~~~F~~f~~~w~~~Rl~ 212 (287)
.|.||++.-+| ++.-++=.+.|+.-|++
T Consensus 3 ~dssdplv~aa------------~iiGIlHLiLwildRlf 30 (43)
T 2kih_A 3 NDSSDPLVVAA------------NIIGILHLILWILDRLF 30 (43)
T ss_dssp ---CCHHHHHH------------HHHHHHHHHHHHHHHHH
T ss_pred CCCCCcHHHHH------------HHHHHHHHHHHHHHHHH
Confidence 46677766554 44556667889999984
No 10
>3cx5_I Cytochrome B-C1 complex subunit 9; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: f.23.14.1 PDB: 3cxh_I* 2ibz_I* 1kyo_I* 1ezv_I* 1kb9_I* 1p84_I*
Probab=4.37 E-value=1.3e+02 Score=20.70 Aligned_cols=16 Identities=19% Similarity=0.486 Sum_probs=10.3
Q ss_pred HHHHHhcCCCCcccCC
Q 046165 266 IWRQLKSGQLGEDIRS 281 (287)
Q Consensus 266 ~~~~i~~G~~~~D~Rs 281 (287)
++....+|+.-+||+.
T Consensus 38 iw~~~NkGKlwkDIk~ 53 (65)
T 3cx5_I 38 WYENHNKGKLWKDVKA 53 (65)
T ss_dssp HHHHHTTTTSHHHHHH
T ss_pred HHHhccCCCCcccChh
Confidence 4444567877777764
Done!