Query 046165
Match_columns 287
No_of_seqs 126 out of 719
Neff 7.0
Searched_HMMs 13730
Date Mon Mar 25 16:13:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046165.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/046165hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2qklb1 a.242.1.1 (B:2-91) mRN 19.6 38 0.0027 23.2 3.0 54 98-151 17-74 (90)
2 d1ml8a_ d.227.1.2 (A:) Hypothe 5.5 2.6E+02 0.019 18.9 3.8 29 7-35 30-58 (134)
3 d1kqfb2 f.23.22.1 (B:246-290) 5.0 2.8E+02 0.02 16.0 2.9 12 264-275 26-37 (45)
4 d2axtl1 f.23.31.1 (L:1-37) Pho 4.9 1.6E+02 0.012 16.2 1.6 10 152-161 28-37 (37)
5 d1ukka_ d.227.1.1 (A:) Hypothe 4.3 3.1E+02 0.023 18.7 3.5 28 8-35 40-67 (141)
6 d1fs1b1 a.157.1.1 (B:86-140) C 4.3 1.5E+02 0.011 17.7 1.3 32 249-281 20-52 (55)
7 d2pn2a1 d.227.1.1 (A:1-132) Un 4.2 3.6E+02 0.026 18.0 3.7 29 7-35 36-64 (132)
8 d1n2fa_ d.227.1.1 (A:) Organic 4.1 3.6E+02 0.026 18.3 3.6 28 8-35 44-71 (142)
9 d1uspa_ d.227.1.1 (A:) Organic 3.9 3.9E+02 0.028 17.9 3.6 28 8-35 39-66 (137)
10 d1vlaa_ d.227.1.2 (A:) Hypothe 3.7 4.2E+02 0.031 17.9 3.7 29 7-35 38-66 (144)
No 1
>d2qklb1 a.242.1.1 (B:2-91) mRNA decapping enzyme Dcp2p, N-terminal domain {Schizosaccharomyces pombe [TaxId: 4896]}
Probab=19.63 E-value=38 Score=23.18 Aligned_cols=54 Identities=11% Similarity=0.090 Sum_probs=37.7
Q ss_pred hhhcCCCCCccchhHHHHHHHHHHHHHHHHHHHHh----hhcccchHHHHHHHHHHHH
Q 046165 98 LYFKGWPNQELKLPIMLYYMCQCGFYIYSIAALLT----WETRRKDFAVMMAHHVITV 151 (287)
Q Consensus 98 ~~w~~~P~~~~~~~~~~yYl~q~afy~~sl~~~~f----~e~kRkDf~~m~~HHivTl 151 (287)
.+-.+=|....+...+.++.+|.|+|.+.=+.... -.-.-|||.+++.+|+-.+
T Consensus 17 RFilN~P~eel~~~~rl~FqiE~A~WfY~Df~~~~~p~Lp~~~~~~Fa~~if~~cp~L 74 (90)
T d2qklb1 17 RFILNLPAEEQSSVERLCFQIEQAHWFYEDFIRAQNDQLPSLGLRVFSAKLFAHCPLL 74 (90)
T ss_dssp HHTTTCCGGGSSCHHHHHHHHHHHHHHHHHTTTTTCTTSCCCCHHHHHHHHHHHCTHH
T ss_pred HHHHcCCHHHhccHHHHHHHHHHHHHHHHHHhhhccCCCCCCcHHHHHHHHHHHCHHH
Confidence 44567788888888999999999999974321100 0122478999999996554
No 2
>d1ml8a_ d.227.1.2 (A:) Hypothetical protein in CRP region {Escherichia coli [TaxId: 562]}
Probab=5.53 E-value=2.6e+02 Score=18.90 Aligned_cols=29 Identities=10% Similarity=0.017 Sum_probs=24.6
Q ss_pred CCCCCCcchhHHHHHHHHHHHHHHHHHHH
Q 046165 7 ESIQPDAWHFVVPLLFAPGFLVARFFLDR 35 (287)
Q Consensus 7 ~~~~p~~~D~~~~~~~a~~~~~~R~~~~~ 35 (287)
.+..|.|.|+++.-.-+|..+.++.+.++
T Consensus 30 ~~~gp~P~elllaal~~C~~~~~~~~a~~ 58 (134)
T d1ml8a_ 30 GDKAPSPMEMVLMAAGGCSAIDVVSILQK 58 (134)
T ss_dssp TSSSCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCChHHHHHHHHHHHHHHHHHHHHHH
Confidence 36779999999999999999988877655
No 3
>d1kqfb2 f.23.22.1 (B:246-290) Iron-sulfur subunit of formate dehydrogenase N, transmembrane anchor {Escherichia coli [TaxId: 562]}
Probab=5.01 E-value=2.8e+02 Score=16.02 Aligned_cols=12 Identities=17% Similarity=0.362 Sum_probs=7.2
Q ss_pred HHHHHHHhcCCC
Q 046165 264 SMIWRQLKSGQL 275 (287)
Q Consensus 264 k~~~~~i~~G~~ 275 (287)
-.+.+.+..|-+
T Consensus 26 ~~~fHYv~vGPn 37 (45)
T d1kqfb2 26 GLIFHYIGIGPN 37 (45)
T ss_dssp HHHHHHHHHCCB
T ss_pred HHHHhhheeCCC
Confidence 345667776753
No 4
>d2axtl1 f.23.31.1 (L:1-37) Photosystem II reaction center protein L, PsbL {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=4.94 E-value=1.6e+02 Score=16.16 Aligned_cols=10 Identities=40% Similarity=0.454 Sum_probs=5.5
Q ss_pred HHHHHhhhcc
Q 046165 152 LLIGYSYFTR 161 (287)
Q Consensus 152 ~Li~~SY~~n 161 (287)
+.+..||.+|
T Consensus 28 ~vLFssYfFN 37 (37)
T d2axtl1 28 ALLFSSYFFN 37 (37)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHhcC
Confidence 4445666654
No 5
>d1ukka_ d.227.1.1 (A:) Hypothetical protein MPN625 {Thermus thermophilus [TaxId: 274]}
Probab=4.35 E-value=3.1e+02 Score=18.69 Aligned_cols=28 Identities=7% Similarity=-0.089 Sum_probs=23.9
Q ss_pred CCCCCcchhHHHHHHHHHHHHHHHHHHH
Q 046165 8 SIQPDAWHFVVPLLFAPGFLVARFFLDR 35 (287)
Q Consensus 8 ~~~p~~~D~~~~~~~a~~~~~~R~~~~~ 35 (287)
..-|+|.|++..-.-+|....+|.+.++
T Consensus 40 ~~gp~P~elllaala~C~~~~~~~~a~~ 67 (141)
T d1ukka_ 40 GEGTNPEELIAAAHAGCFSMALAASLER 67 (141)
T ss_dssp CSSBCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4568999999999999999988877766
No 6
>d1fs1b1 a.157.1.1 (B:86-140) Cyclin A/CDK2-associated p45, Skp1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=4.26 E-value=1.5e+02 Score=17.75 Aligned_cols=32 Identities=19% Similarity=0.223 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHH-HHHHHHHHHHhcCCCCcccCC
Q 046165 249 LMLFVFHIYWWV-LIFSMIWRQLKSGQLGEDIRS 281 (287)
Q Consensus 249 ~~L~~LhiyWf~-lIlk~~~~~i~~G~~~~D~Rs 281 (287)
.+--.|+|-... +..+.+...+ +|+..|.+|+
T Consensus 20 ~AAnyL~I~~Lldl~c~~vA~~i-kgKt~eeiR~ 52 (55)
T d1fs1b1 20 LAANYLDIKGLLDVTCKTVANMI-KGKTPEEIRK 52 (55)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHH-TTCCHHHHHH
T ss_pred HHHHHcCcHHHHHHHHHHHHHHH-cCCCHHHHHH
Confidence 334444554444 5556666666 6988888884
No 7
>d2pn2a1 d.227.1.1 (A:1-132) Uncharacterized protein Psyc0566 {Psychrobacter arcticus 273-4 [TaxId: 259536]}
Probab=4.24 E-value=3.6e+02 Score=18.00 Aligned_cols=29 Identities=3% Similarity=-0.128 Sum_probs=24.1
Q ss_pred CCCCCCcchhHHHHHHHHHHHHHHHHHHH
Q 046165 7 ESIQPDAWHFVVPLLFAPGFLVARFFLDR 35 (287)
Q Consensus 7 ~~~~p~~~D~~~~~~~a~~~~~~R~~~~~ 35 (287)
++.-|.|.|+++.-.-+|....++.+.++
T Consensus 36 ~~~g~~P~eLllaala~C~~~~~~~~a~~ 64 (132)
T d2pn2a1 36 KGEAFSPTDLLATSLASCMLTIIGIKARD 64 (132)
T ss_dssp CCSSCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35678999999999999998888877655
No 8
>d1n2fa_ d.227.1.1 (A:) Organic hydroperoxide resistance protein Ohr {Pseudomonas aeruginosa, pa01 [TaxId: 287]}
Probab=4.05 E-value=3.6e+02 Score=18.29 Aligned_cols=28 Identities=7% Similarity=-0.063 Sum_probs=23.5
Q ss_pred CCCCCcchhHHHHHHHHHHHHHHHHHHH
Q 046165 8 SIQPDAWHFVVPLLFAPGFLVARFFLDR 35 (287)
Q Consensus 8 ~~~p~~~D~~~~~~~a~~~~~~R~~~~~ 35 (287)
+.-|+|.|++..-.-+|....++.+.++
T Consensus 44 ~~g~~P~elllaalasC~~~t~~~~a~~ 71 (142)
T d1n2fa_ 44 GAATNPEQLFAAGYSACFIGAMKFVAGQ 71 (142)
T ss_dssp CSSBCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3458999999999999998888887765
No 9
>d1uspa_ d.227.1.1 (A:) Organic hydroperoxide resistance protein Ohr {Deinococcus radiodurans [TaxId: 1299]}
Probab=3.85 E-value=3.9e+02 Score=17.86 Aligned_cols=28 Identities=7% Similarity=-0.239 Sum_probs=22.9
Q ss_pred CCCCCcchhHHHHHHHHHHHHHHHHHHH
Q 046165 8 SIQPDAWHFVVPLLFAPGFLVARFFLDR 35 (287)
Q Consensus 8 ~~~p~~~D~~~~~~~a~~~~~~R~~~~~ 35 (287)
+.-|+|.|++..-.-+|....+|.+.++
T Consensus 39 ~~g~~P~elllaAlasC~~~t~~~~a~~ 66 (137)
T d1uspa_ 39 GPGTNPEQLFAAGYAACFQGALGVVSRR 66 (137)
T ss_dssp CSCBCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3568899999999999988888876654
No 10
>d1vlaa_ d.227.1.2 (A:) Hypothetical protein TM0919 {Thermotoga maritima [TaxId: 2336]}
Probab=3.66 E-value=4.2e+02 Score=17.86 Aligned_cols=29 Identities=14% Similarity=0.119 Sum_probs=24.2
Q ss_pred CCCCCCcchhHHHHHHHHHHHHHHHHHHH
Q 046165 7 ESIQPDAWHFVVPLLFAPGFLVARFFLDR 35 (287)
Q Consensus 7 ~~~~p~~~D~~~~~~~a~~~~~~R~~~~~ 35 (287)
++.-|.|.|++..-.-+|....++.+..+
T Consensus 38 ~~~g~~P~elllaala~C~~~~~~~~a~~ 66 (144)
T d1vlaa_ 38 KDAAPRPLELVLTGLMGCTGMDVVSILRK 66 (144)
T ss_dssp CSCSCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCcCHHHHHHHHHHHHHHHHHHHHHhh
Confidence 35679999999999999998888877754
Done!