BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 046167
(424 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2PQ6|A Chain A, Crystal Structure Of Medicago Truncatula Ugt85h2- Insights
Into The Structural Basis Of A Multifunctional (Iso)
Flavonoid Glycosyltransferase
Length = 482
Score = 253 bits (647), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 153/482 (31%), Positives = 243/482 (50%), Gaps = 72/482 (14%)
Query: 1 MEEQGQRRRRVVLVPSPHQGHINPMLQLGTILHSKGFSITVVHTQFN------SPNP--- 51
M R+ VV++P P QGHINP+ +L +LH +GF IT V+T++N S P
Sbjct: 1 MGNFANRKPHVVMIPYPVQGHINPLFKLAKLLHLRGFHITFVNTEYNHKRLLKSRGPKAF 60
Query: 52 SNHPEFEFQSIPDGLM------DVNISARNLVDSILLLNENCREPFRNWLVQMIKEQQPG 105
+F F+SIPDGL DV+ L S+ +N +P+ L ++
Sbjct: 61 DGFTDFNFESIPDGLTPMEGDGDVSQDVPTLCQSV---RKNFLKPYCELLTRL-NHSTNV 116
Query: 106 DEIVCIIYDEVMYFAEASASQLNVQSIILRTSGAVTVVARLVLFQLKEEGYNPLK-ESYV 164
+ C++ D M F +A + + +++ +S A +++ + E G P K ESY+
Sbjct: 117 PPVTCLVSDCCMSFTIQAAEEFELPNVLYFSSSACSLLNVMHFRSFVERGIIPFKDESYL 176
Query: 165 Q--------------------------------------LINNAYSARTSSAVISNTIYC 186
I A + ++ NT
Sbjct: 177 TNGCLETKVDWIPGLKNFRLKDIVDFIRTTNPNDIMLEFFIEVADRVNKDTTILLNTFNE 236
Query: 187 LEESVLSQLQQYFKVPN-FPIGPLH---KFAP------SSNGSLLKEDTSCISWLNNQSP 236
LE V++ L +P+ +PIGPL K P S + +L KEDT C+ WL ++ P
Sbjct: 237 LESDVINALSS--TIPSIYPIGPLPSLLKQTPQIHQLDSLDSNLWKEDTECLDWLESKEP 294
Query: 237 KSVIYVSLGSVASMDKKELEEMAWGLVNSKQPFLWVIRPRTNNAPEGIELLPKVLAEDVQ 296
SV+YV+ GS M ++L E AWGL N K+ FLW+IRP G + ++
Sbjct: 295 GSVVYVNFGSTTVMTPEQLLEFAWGLANCKKSFLWIIRPDL--VIGGSVIFSSEFTNEIA 352
Query: 297 ENGYIVKWAPQKEVLSHVAVGGFWSHCGWNSTLESICEGVPMICMPFFEDQKVNARYLSH 356
+ G I W PQ +VL+H ++GGF +HCGWNST ESIC GVPM+C PFF DQ + R++ +
Sbjct: 353 DRGLIASWCPQDKVLNHPSIGGFLTHCGWNSTTESICAGVPMLCWPFFADQPTDCRFICN 412
Query: 357 VWGVGLELEHELERGAVEKAVRKLTVDKEGEFLRQRAAQLKEEVELSTRKGGFSYNSLNE 416
W +G+E++ ++R + K + ++ +G+ ++Q+A +LK++ E +TR GG SY +LN+
Sbjct: 413 EWEIGMEIDTNVKREELAKLINEVIAGDKGKKMKQKAMELKKKAEENTRPGGCSYMNLNK 472
Query: 417 LL 418
++
Sbjct: 473 VI 474
>pdb|2C1X|A Chain A, Structure And Activity Of A Flavonoid 3-O
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
pdb|2C1Z|A Chain A, Structure And Activity Of A Flavonoid 3-O
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
pdb|2C9Z|A Chain A, Structure And Activity Of A Flavonoid 3-0
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
Length = 456
Score = 160 bits (405), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 106/396 (26%), Positives = 190/396 (47%), Gaps = 46/396 (11%)
Query: 62 IPDGLMDVNISARNLVDSILLLNENCREPFRNWLVQMIKEQQPGDEIVCIIYDEVMYFAE 121
I DG+ + + A + I L E FR +V + E G + C++ D ++FA
Sbjct: 69 ISDGVPEGYVFAGRPQEDIELFTRAAPESFRQGMVMAVAET--GRPVSCLVADAFIWFAA 126
Query: 122 ASASQLNVQSIILRTSGAVTVVARLVLFQLKEE-GYNPLKESYVQLIN------------ 168
A+++ V + T+G ++ + + +++E+ G + ++ +L+N
Sbjct: 127 DMAAEMGVAWLPFWTAGPNSLSTHVYIDEIREKIGVSGIQGREDELLNFIPGMSKVRFRD 186
Query: 169 ----------NAYSART----------SSAVISNTIYCLEESVLSQLQQYFKVPNFPIGP 208
N+ +R ++AV N+ L++S+ + L+ K IGP
Sbjct: 187 LQEGIVFGNLNSLFSRMLHRMGQVLPKATAVFINSFEELDDSLTNDLKSKLKT-YLNIGP 245
Query: 209 LHKFAPSSNGSLLKEDTSCISWLNNQSPKSVIYVSLGSVASMDKKELEEMAWGLVNSKQP 268
+ P ++ T C+ WL + P SV+Y+S G+V + E+ ++ L S+ P
Sbjct: 246 FNLITPPP---VVPNTTGCLQWLKERKPTSVVYISFGTVTTPPPAEVVALSEALEASRVP 302
Query: 269 FLWVIRPRTNNAPEGIELLPKVLAEDVQENGYIVKWAPQKEVLSHVAVGGFWSHCGWNST 328
F+W +R + LP+ E + G +V WAPQ EVL+H AVG F +HCGWNS
Sbjct: 303 FIWSLRDKARVH------LPEGFLEKTRGYGMVVPWAPQAEVLAHEAVGAFVTHCGWNSL 356
Query: 329 LESICEGVPMICMPFFEDQKVNARYLSHVWGVGLELEHEL-ERGAVEKAVRKLTVDKEGE 387
ES+ GVP+IC PFF DQ++N R + V +G+ +E + + + ++ ++G+
Sbjct: 357 WESVAGGVPLICRPFFGDQRLNGRMVEDVLEIGVRIEGGVFTKSGLMSCFDQILSQEKGK 416
Query: 388 FLRQRAAQLKEEVELSTRKGGFSYNSLNELLDLINK 423
LR+ L+E + + G S + L+DL++K
Sbjct: 417 KLRENLRALRETADRAVGPKGSSTENFITLVDLVSK 452
>pdb|2VCE|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
pdb|2VCH|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-Glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
pdb|2VG8|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-Glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
Length = 480
Score = 160 bits (404), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 127/474 (26%), Positives = 215/474 (45%), Gaps = 72/474 (15%)
Query: 1 MEEQGQRRRRVVLVPSPHQGHINPMLQLGT-ILHSKGFSITVVHTQFNSPNPSNHPEFEF 59
MEE + V ++PSP GH+ P+++ ++H G ++T V P+ + +
Sbjct: 1 MEES--KTPHVAIIPSPGMGHLIPLVEFAKRLVHLHGLTVTFVIAGEGPPSKAQRTVLD- 57
Query: 60 QSIPDGLMDVNISARNLVD-------------SILLLNENCREPFRNWLVQMIKEQQPGD 106
S+P + V + +L D ++ N R+ F +++ + G
Sbjct: 58 -SLPSSISSVFLPPVDLTDLSSSTRIESRISLTVTRSNPELRKVFDSFV-------EGGR 109
Query: 107 EIVCIIYDEVMYFAEASASQLNVQSIILRTSGAVTVVARLVLFQLKE-------EGYNPL 159
++ D A A + +V I + A + L L +L E E PL
Sbjct: 110 LPTALVVDLFGTDAFDVAVEFHVPPYIFYPTTANVLSFFLHLPKLDETVSCEFRELTEPL 169
Query: 160 ---------------------KESYVQLINNAYSARTSSAVISNTIYCLEESVLSQLQQ- 197
++Y L++N + + ++ NT + LE + + LQ+
Sbjct: 170 MLPGCVPVAGKDFLDPAQDRKDDAYKWLLHNTKRYKEAEGILVNTFFELEPNAIKALQEP 229
Query: 198 -YFKVPNFPIGPLHKFAPSSNGSLLKEDTSCISWLNNQSPKSVIYVSLGSVASMDKKELE 256
K P +P+GPL E++ C+ WL+NQ SV+YVS GS ++ ++L
Sbjct: 230 GLDKPPVYPVGPLVNIGKQEAKQ--TEESECLKWLDNQPLGSVLYVSFGSGGTLTCEQLN 287
Query: 257 EMAWGLVNSKQPFLWVIRPRTNNA----------PEGIELLPKVLAEDVQENGYIVK-WA 305
E+A GL +S+Q FLWVIR + A + + LP E ++ G+++ WA
Sbjct: 288 ELALGLADSEQRFLWVIRSPSGIANSSYFDSHSQTDPLTFLPPGFLERTKKRGFVIPFWA 347
Query: 306 PQKEVLSHVAVGGFWSHCGWNSTLESICEGVPMICMPFFEDQKVNARYLSHVWGVGLEL- 364
PQ +VL+H + GGF +HCGWNSTLES+ G+P+I P + +QK+NA LS L
Sbjct: 348 PQAQVLAHPSTGGFLTHCGWNSTLESVVSGIPLIAWPLYAEQKMNAVLLSEDIRAALRPR 407
Query: 365 ---EHELERGAVEKAVRKLTVDKEGEFLRQRAAQLKEEVELSTRKGGFSYNSLN 415
+ + R V + V+ L +EG+ +R + +LKE + G S +L+
Sbjct: 408 AGDDGLVRREEVARVVKGLMEGEEGKGVRNKMKELKEAACRVLKDDGTSTKALS 461
>pdb|3HBF|A Chain A, Structure Of Ugt78g1 Complexed With Myricetin And Udp
pdb|3HBJ|A Chain A, Structure Of Ugt78g1 Complexed With Udp
Length = 454
Score = 149 bits (375), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 118/459 (25%), Positives = 207/459 (45%), Gaps = 50/459 (10%)
Query: 2 EEQGQRRRRVVLVPSPHQGHINPMLQLGTILHSKGFSITVVHTQFNSPNP-----SNH-- 54
E G V ++ P H P+L L + ++ +T + N SN
Sbjct: 7 EMNGNNLLHVAVLAFPFGTHAAPLLSLVKKIATEAPKVTFSFFCTTTTNDTLFSRSNEFL 66
Query: 55 PEFEFQSIPDGLMDVNISARNLVDSILLLNENCREPFRNWLVQMIKEQQPGDEIVCIIYD 114
P ++ ++ DGL +S+ N + I L + +E F++ + + + E G I C++ D
Sbjct: 67 PNIKYYNVHDGLPKGYVSSGNPREPIFLFIKAMQENFKHVIDEAVAET--GKNITCLVTD 124
Query: 115 EVMYFAEASASQLNVQSIILRTSGAVTVVARLVLFQLKEE----------------GYNP 158
+F A +++ + + L T+G +++ + ++E+ G+
Sbjct: 125 AFFWFGADLAEEMHAKWVPLWTAGPHSLLTHVYTDLIREKTGSKEVHDVKSIDVLPGFPE 184
Query: 159 LK-----ESYVQLINNAYSAR---------TSSAVISNTIYCLEESVLSQLQQYFKVPNF 204
LK E ++ I+ ++ ++AV N+ + + ++L FK+
Sbjct: 185 LKASDLPEGVIKDIDVPFATMLHKMGLELPRANAVAINSFATIHPLIENELNSKFKLL-L 243
Query: 205 PIGPLHKFAPSSNGSLLKEDTSCISWLNNQSPKSVIYVSLGSVASMDKKELEEMAWGLVN 264
+GP + P S ++ C+ WL+ SV+Y+S GSV + EL +A L
Sbjct: 244 NVGPFNLTTPQRKVS---DEHGCLEWLDQHENSSVVYISFGSVVTPPPHELTALAESLEE 300
Query: 265 SKQPFLWVIRPRTNNAPEGIELLPKVLAEDVQENGYIVKWAPQKEVLSHVAVGGFWSHCG 324
PF+W R P+ E LPK E + G IV WAPQ E+L H +VG F +H G
Sbjct: 301 CGFPFIWSFR----GDPK--EKLPKGFLERTKTKGKIVAWAPQVEILKHSSVGVFLTHSG 354
Query: 325 WNSTLESICEGVPMICMPFFEDQKVNARYLSHVWGVGLELEHE-LERGAVEKAVRKLTVD 383
WNS LE I GVPMI PFF DQ +N V +G+ +++ L + +++KA+
Sbjct: 355 WNSVLECIVGGVPMISRPFFGDQGLNTILTESVLEIGVGVDNGVLTKESIKKALELTMSS 414
Query: 384 KEGEFLRQRAAQLKEEVELSTRKGGFSYNSLNELLDLIN 422
++G +RQ+ +LKE + + G S L+ ++
Sbjct: 415 EKGGIMRQKIVKLKESAFKAVEQNGTSAMDFTTLIQIVT 453
>pdb|2ACV|A Chain A, Crystal Structure Of Medicago Truncatula Ugt71g1
pdb|2ACV|B Chain B, Crystal Structure Of Medicago Truncatula Ugt71g1
Length = 463
Score = 135 bits (339), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 91/273 (33%), Positives = 141/273 (51%), Gaps = 20/273 (7%)
Query: 162 SYVQLINNAYSARTSSAVISNTIYCLEESVLSQLQQYFKV--PNFPIGPLHKFAPSSNGS 219
Y+ A R + +I NT LE+S + L + + P + +GPL N
Sbjct: 198 GYIAYYKLAERFRDTKGIIVNTFSDLEQSSIDALYDHDEKIPPIYAVGPLLDLKGQPNPK 257
Query: 220 LLKEDTSCI-SWLNNQSPKSVIYVSLGSVA-SMDKKELEEMAWGLVNSKQPFLWVIRPRT 277
L + I WL+ Q KSV+++ GS+ S ++ E+A GL +S FLW
Sbjct: 258 LDQAQHDLILKWLDEQPDKSVVFLCFGSMGVSFGPSQIREIALGLKHSGVRFLWSNSAEK 317
Query: 278 NNAPEG-IELLPKVLAEDVQENGYIVKWAPQKEVLSHVAVGGFWSHCGWNSTLESICEGV 336
PEG +E + +++ G I WAPQ EVL+H A+GGF SHCGWNS LES+ GV
Sbjct: 318 KVFPEGFLEWM------ELEGKGMICGWAPQVEVLAHKAIGGFVSHCGWNSILESMWFGV 371
Query: 337 PMICMPFFEDQKVNARYLSHVWGVGLELEHELERGA-------VEKAVRKLTVDKEGEFL 389
P++ P + +Q++NA L WGVGL L + +G+ +EK ++ L +DK+ +
Sbjct: 372 PILTWPIYAEQQLNAFRLVKEWGVGLGLRVDYRKGSDVVAAEEIEKGLKDL-MDKD-SIV 429
Query: 390 RQRAAQLKEEVELSTRKGGFSYNSLNELLDLIN 422
++ ++KE + GG S S+ +L+D I
Sbjct: 430 HKKVQEMKEMSRNAVVDGGSSLISVGKLIDDIT 462
>pdb|2ACW|A Chain A, Crystal Structure Of Medicago Truncatula Ugt71g1 Complexed
With Udp-Glucose
pdb|2ACW|B Chain B, Crystal Structure Of Medicago Truncatula Ugt71g1 Complexed
With Udp-Glucose
Length = 465
Score = 134 bits (338), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 91/273 (33%), Positives = 141/273 (51%), Gaps = 20/273 (7%)
Query: 162 SYVQLINNAYSARTSSAVISNTIYCLEESVLSQLQQYFKV--PNFPIGPLHKFAPSSNGS 219
Y+ A R + +I NT LE+S + L + + P + +GPL N
Sbjct: 198 GYIAYYKLAERFRDTKGIIVNTFSDLEQSSIDALYDHDEKIPPIYAVGPLLDLKGQPNPK 257
Query: 220 LLKEDTSCI-SWLNNQSPKSVIYVSLGSVA-SMDKKELEEMAWGLVNSKQPFLWVIRPRT 277
L + I WL+ Q KSV+++ GS+ S ++ E+A GL +S FLW
Sbjct: 258 LDQAQHDLILKWLDEQPDKSVVFLCFGSMGVSFGPSQIREIALGLKHSGVRFLWSNSAEK 317
Query: 278 NNAPEG-IELLPKVLAEDVQENGYIVKWAPQKEVLSHVAVGGFWSHCGWNSTLESICEGV 336
PEG +E + +++ G I WAPQ EVL+H A+GGF SHCGWNS LES+ GV
Sbjct: 318 KVFPEGFLEWM------ELEGKGMICGWAPQVEVLAHKAIGGFVSHCGWNSILESMWFGV 371
Query: 337 PMICMPFFEDQKVNARYLSHVWGVGLELEHELERGA-------VEKAVRKLTVDKEGEFL 389
P++ P + +Q++NA L WGVGL L + +G+ +EK ++ L +DK+ +
Sbjct: 372 PILTWPIYAEQQLNAFRLVKEWGVGLGLRVDYRKGSDVVAAEEIEKGLKDL-MDKD-SIV 429
Query: 390 RQRAAQLKEEVELSTRKGGFSYNSLNELLDLIN 422
++ ++KE + GG S S+ +L+D I
Sbjct: 430 HKKVQEMKEMSRNAVVDGGSSLISVGKLIDDIT 462
>pdb|2O6L|A Chain A, Crystal Structure Of The Udp-Glucuronic Acid Binding
Domain Of The Human Drug Metabolizing
Udp-Glucuronosyltransferase 2b7
pdb|2O6L|B Chain B, Crystal Structure Of The Udp-Glucuronic Acid Binding
Domain Of The Human Drug Metabolizing
Udp-Glucuronosyltransferase 2b7
Length = 170
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 48/114 (42%), Gaps = 15/114 (13%)
Query: 238 SVIYVSLGSVASMDKKELEE-MAWGLVNSKQPFLWVIRPRTNNAPEGIELLPKVLAEDVQ 296
V+ SLGS S +E +A L Q LW N P+ + L
Sbjct: 22 GVVVFSLGSXVSNXTEERANVIASALAQIPQKVLWRF---DGNKPDTLGL---------- 68
Query: 297 ENGYIVKWAPQKEVLSHVAVGGFWSHCGWNSTLESICEGVPMICMPFFEDQKVN 350
N + KW PQ ++L H F +H G N E+I G+P + +P F DQ N
Sbjct: 69 -NTRLYKWIPQNDLLGHPKTRAFITHGGANGIYEAIYHGIPXVGIPLFADQPDN 121
>pdb|2IYF|A Chain A, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
pdb|2IYF|B Chain B, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
Length = 430
Score = 45.1 bits (105), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 91/408 (22%), Positives = 156/408 (38%), Gaps = 73/408 (17%)
Query: 19 QGHINPMLQLGTILHSKGFSIT-----VVHTQFNSPNPSNHPEFEFQSIPDGLMDVNISA 73
GH+NP L++ L ++G +T V + + P P ++P D
Sbjct: 18 HGHVNPSLEVIRELVARGHRVTYAIPPVFADKVAATGP--RPVLYHSTLPGPDADPEAWG 75
Query: 74 RNLVDSILLLNENCREPFRNWLVQMIKE--QQPGDEIV-CIIYDEVMYFAEASASQLNVQ 130
L+D++ EPF N +Q + + D+I +++D Y A A + V
Sbjct: 76 STLLDNV--------EPFLNDAIQALPQLADAYADDIPDLVLHDITSYPARVLARRWGVP 127
Query: 131 SIILRTSGAVTVVARLVLFQ-LKEEGYNPL-KESYVQLINNAYSARTSSAVISNTIYCLE 188
AV++ LV ++ +EE P+ +E AY AR + + N I
Sbjct: 128 --------AVSLSPNLVAWKGYEEEVAEPMWREPRQTERGRAYYARFEAWLKENGITEHP 179
Query: 189 ESVLSQLQQYFKVPNFPIGP--------LHKFAPSSNGSLLKEDTSCISWLNNQSPKSVI 240
++ S + + + P ++ F + G +E W + V+
Sbjct: 180 DTFASHPPRSLVLIPKALQPHADRVDEDVYTFVGACQGDRAEEG----GWQRPAGAEKVV 235
Query: 241 YVSLGSVASMDKKELEE--MAWGLVNSKQPFLWVIRPRTNNAPEGIELLPKVLAEDVQEN 298
VSLGS + E A+G + L + G ++ P L E + +N
Sbjct: 236 LVSLGSAFTKQPAFYRECVRAFGNLPGWHLVLQI----------GRKVTPAELGE-LPDN 284
Query: 299 GYIVKWAPQKEVLSHVAVGGFWSHCGWNSTLESICEGVPMICMPFFEDQKVNARYLSHVW 358
+ W PQ +L + F +H G + E + PMI +P DQ NA L
Sbjct: 285 VEVHDWVPQLAILRQADL--FVTHAGAGGSQEGLATATPMIAVPQAVDQFGNADMLQ--- 339
Query: 359 GVGLELEHELERGAVEKAVRKL-TVDKEGEFLRQRAAQLKEEVELSTR 405
G+G+ RKL T + + LR+ A L ++ E++ R
Sbjct: 340 GLGV--------------ARKLATEEATADLLRETALALVDDPEVARR 373
>pdb|2IYA|A Chain A, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
pdb|2IYA|B Chain B, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
Length = 424
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 37/67 (55%), Gaps = 3/67 (4%)
Query: 288 PKVLAEDVQENGYIVKWAPQKEVLSHVAVGGFWSHCGWNSTLESICEGVPMICMPFFEDQ 347
P L E V N + +W PQ ++L+ + F +H G ST+E++ VPM+ +P +Q
Sbjct: 297 PADLGE-VPPNVEVHQWVPQLDILTKASA--FITHAGMGSTMEALSNAVPMVAVPQIAEQ 353
Query: 348 KVNARYL 354
+NA +
Sbjct: 354 TMNAERI 360
>pdb|3OTG|A Chain A, Crystal Structure Of Calg1, Calicheamicin
Glycostyltransferase, Tdp Bound Form
pdb|3OTH|A Chain A, Crystal Structure Of Calg1, Calicheamicin
Glycostyltransferase, Tdp And Calicheamicin Alpha3i
Bound Form
pdb|3OTH|B Chain B, Crystal Structure Of Calg1, Calicheamicin
Glycostyltransferase, Tdp And Calicheamicin Alpha3i
Bound Form
Length = 412
Score = 37.4 bits (85), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 29/127 (22%), Positives = 53/127 (41%), Gaps = 13/127 (10%)
Query: 221 LKEDTSCISWLNNQ-SPKSVIYVSLGSVASMDKKELEEMAWGLVNSKQPFLWVIRPRTNN 279
E +WL+++ + + ++Y++LG+ + + L GL L P +
Sbjct: 225 FAEQGDLPAWLSSRDTARPLVYLTLGTSSGGTVEVLRAAIDGLAGLDADVLVASGPSLDV 284
Query: 280 APEGIELLPKVLAEDVQENGYIVKWAPQKEVLSHVAVGGFWSHCGWNSTLESICEGVPMI 339
+ G +V N + W PQ +L HV + H G +TL ++ GVP +
Sbjct: 285 SGLG----------EVPANVRLESWVPQAALLPHVDL--VVHHGGSGTTLGALGAGVPQL 332
Query: 340 CMPFFED 346
P+ D
Sbjct: 333 SFPWAGD 339
>pdb|3IA7|A Chain A, Crystal Structure Of Calg4, The Calicheamicin
Glycosyltransferase
pdb|3IA7|B Chain B, Crystal Structure Of Calg4, The Calicheamicin
Glycosyltransferase
Length = 402
Score = 34.7 bits (78), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 38/82 (46%), Gaps = 3/82 (3%)
Query: 303 KWAPQKEVLSHVAVGGFWSHCGWNSTLESICEGVPMICMPFFEDQKVNARYLSHVWGVGL 362
+W P VL+H +H + LE+ GVP++ +P F + + G+G
Sbjct: 287 QWIPFHSVLAHAR--ACLTHGTTGAVLEAFAAGVPLVLVPHFATEAAPSAERVIELGLGS 344
Query: 363 ELE-HELERGAVEKAVRKLTVD 383
L +LE ++ +AV +L D
Sbjct: 345 VLRPDQLEPASIREAVERLAAD 366
>pdb|4FZR|A Chain A, Crystal Structure Of Ssfs6, Streptomyces Sp. Sf2575
Glycosyltransferase
Length = 398
Score = 33.9 bits (76), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 39/135 (28%), Positives = 58/135 (42%), Gaps = 28/135 (20%)
Query: 259 AWGLVNSKQPFLW------VIRPRTNNAPEGIELLPKVLAEDVQENGYIV------KWAP 306
+W KQP L V P TN P G+ LL + L++++ + G+ V K A
Sbjct: 219 SWVFEERKQPRLCLTFGTRVPLPNTNTIPGGLSLL-QALSQELPKLGFEVVVAVSDKLAQ 277
Query: 307 QKEVLSH--VAVGGF------------WSHCGWNSTLESICEGVPMICMPFFEDQKVNAR 352
+ L +A G F H G +TL + EGVP + +P + +AR
Sbjct: 278 TLQPLPEGVLAAGQFPLSAIXPACDVVVHHGGHGTTLTCLSEGVPQVSVPVIAEVWDSAR 337
Query: 353 YLSHVWGVGLELEHE 367
L H G G+E+ E
Sbjct: 338 LL-HAAGAGVEVPWE 351
>pdb|4G2T|A Chain A, Crystal Structure Of Streptomyces Sp. Sf2575
Glycosyltransferase Ssfs6, Complexed With Thymidine
Diphosphate
Length = 397
Score = 33.9 bits (76), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 39/135 (28%), Positives = 58/135 (42%), Gaps = 28/135 (20%)
Query: 259 AWGLVNSKQPFLW------VIRPRTNNAPEGIELLPKVLAEDVQENGYIV------KWAP 306
+W KQP L V P TN P G+ LL + L++++ + G+ V K A
Sbjct: 218 SWVFEERKQPRLCLTFGTRVPLPNTNTIPGGLSLL-QALSQELPKLGFEVVVAVSDKLAQ 276
Query: 307 QKEVLSH--VAVGGF------------WSHCGWNSTLESICEGVPMICMPFFEDQKVNAR 352
+ L +A G F H G +TL + EGVP + +P + +AR
Sbjct: 277 TLQPLPEGVLAAGQFPLSAIXPACDVVVHHGGHGTTLTCLSEGVPQVSVPVIAEVWDSAR 336
Query: 353 YLSHVWGVGLELEHE 367
L H G G+E+ E
Sbjct: 337 LL-HAAGAGVEVPWE 350
>pdb|2XCI|A Chain A, Membrane-Embedded Monofunctional Glycosyltransferase Waaa
Of Aquifex Aeolicus, Substrate-Free Form
pdb|2XCI|B Chain B, Membrane-Embedded Monofunctional Glycosyltransferase Waaa
Of Aquifex Aeolicus, Substrate-Free Form
pdb|2XCI|C Chain C, Membrane-Embedded Monofunctional Glycosyltransferase Waaa
Of Aquifex Aeolicus, Substrate-Free Form
pdb|2XCI|D Chain D, Membrane-Embedded Monofunctional Glycosyltransferase Waaa
Of Aquifex Aeolicus, Substrate-Free Form
pdb|2XCU|A Chain A, Membrane-Embedded Monofunctional Glycosyltransferase Waaa
Of Aquifex Aeolicus, Comlex With Cmp
pdb|2XCU|B Chain B, Membrane-Embedded Monofunctional Glycosyltransferase Waaa
Of Aquifex Aeolicus, Comlex With Cmp
pdb|2XCU|C Chain C, Membrane-Embedded Monofunctional Glycosyltransferase Waaa
Of Aquifex Aeolicus, Comlex With Cmp
pdb|2XCU|D Chain D, Membrane-Embedded Monofunctional Glycosyltransferase Waaa
Of Aquifex Aeolicus, Comlex With Cmp
Length = 374
Score = 32.7 bits (73), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 37/71 (52%), Gaps = 5/71 (7%)
Query: 316 VGGFWSHCGWNSTLESICEGVPMICMPFFEDQKVN-ARYLSHVWGVGLELEHELERGAVE 374
VGG + + G ++ LE C G+P+I P+ KVN + G G E+++E E V
Sbjct: 283 VGGTFVNIGGHNLLEPTCWGIPVIYGPY--THKVNDLKEFLEKEGAGFEVKNETE--LVT 338
Query: 375 KAVRKLTVDKE 385
K L+V KE
Sbjct: 339 KLTELLSVKKE 349
>pdb|1X8X|A Chain A, Tyrosyl T-Rna Synthetase From E.Coli Complexed With
Tyrosine
Length = 322
Score = 31.6 bits (70), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 15/57 (26%), Positives = 32/57 (56%), Gaps = 2/57 (3%)
Query: 291 LAEDVQENGYIVKWAPQKEVLSHVAVGGFWSHCGWNSTLESICEG--VPMICMPFFE 345
L + +QE G + + ++ + +A G +CG++ T +S+ G VP++C+ F+
Sbjct: 6 LIKQLQERGLVAQVTDEEALAERLAQGPIALYCGFDPTADSLHLGHLVPLLCLKRFQ 62
>pdb|1VBM|A Chain A, Crystal Structure Of The Escherichia Coli Tyrosyl-Trna
Synthetase Complexed With Tyr-Ams
pdb|1VBM|B Chain B, Crystal Structure Of The Escherichia Coli Tyrosyl-Trna
Synthetase Complexed With Tyr-Ams
Length = 318
Score = 31.2 bits (69), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 15/57 (26%), Positives = 32/57 (56%), Gaps = 2/57 (3%)
Query: 291 LAEDVQENGYIVKWAPQKEVLSHVAVGGFWSHCGWNSTLESICEG--VPMICMPFFE 345
L + +QE G + + ++ + +A G +CG++ T +S+ G VP++C+ F+
Sbjct: 2 LIKQLQERGLVAQVTDEEALAERLAQGPIALYCGFDPTADSLHLGHLVPLLCLKRFQ 58
>pdb|1WQ3|A Chain A, Escherichia Coli Tyrosyl-Trna Synthetase Mutant Comlexed
With 3-Iodo- L-Tyrosine
pdb|2YXN|A Chain A, Structual Basis Of Azido-Tyrosine Recognition By
Engineered Bacterial Tyrosyl-Trna Synthetase
Length = 322
Score = 29.3 bits (64), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 15/57 (26%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
Query: 291 LAEDVQENGYIVKWAPQKEVLSHVAVGGFWSHCGWNSTLESICEG--VPMICMPFFE 345
L + +QE G + + ++ + +A G CG++ T +S+ G VP++C+ F+
Sbjct: 6 LIKQLQERGLVAQVTDEEALAERLAQGPIALVCGFDPTADSLHLGHLVPLLCLKRFQ 62
>pdb|1VBN|A Chain A, Escherichia Coli Tyrosyl-Trna Synthetase Mutant Complexed
With Tyr-Ams
pdb|1VBN|B Chain B, Escherichia Coli Tyrosyl-Trna Synthetase Mutant Complexed
With Tyr-Ams
Length = 318
Score = 29.3 bits (64), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 15/57 (26%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
Query: 291 LAEDVQENGYIVKWAPQKEVLSHVAVGGFWSHCGWNSTLESICEG--VPMICMPFFE 345
L + +QE G + + ++ + +A G CG++ T +S+ G VP++C+ F+
Sbjct: 2 LIKQLQERGLVAQVTDEEALAERLAQGPIALVCGFDPTADSLHLGHLVPLLCLKRFQ 58
>pdb|1WQ4|A Chain A, Escherichia Coli Tyrosyl-Trna Synthetase Mutant Complexed
With L- Tyrosine
Length = 321
Score = 29.3 bits (64), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 15/57 (26%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
Query: 291 LAEDVQENGYIVKWAPQKEVLSHVAVGGFWSHCGWNSTLESICEG--VPMICMPFFE 345
L + +QE G + + ++ + +A G CG++ T +S+ G VP++C+ F+
Sbjct: 5 LIKQLQERGLVAQVTDEEALAERLAQGPIALVCGFDPTADSLHLGHLVPLLCLKRFQ 61
>pdb|3VKG|A Chain A, X-Ray Structure Of An Mtbd Truncation Mutant Of Dynein Motor
Domain
pdb|3VKG|B Chain B, X-Ray Structure Of An Mtbd Truncation Mutant Of Dynein Motor
Domain
Length = 3245
Score = 28.9 bits (63), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 28/104 (26%), Positives = 43/104 (41%), Gaps = 13/104 (12%)
Query: 95 LVQMIKEQQPGDEIVCIIYDEVMYFAEASASQLNVQSIILRTSGAVTVVARLVLFQLKEE 154
L QM+++QQ + + A +L VQ + AV V + K E
Sbjct: 1961 LKQMVQDQQAAE------------IKQKDARELQVQLDVRNKEIAVQKVKAYADLE-KAE 2007
Query: 155 GYNPLKESYVQLINNAYSARTSSAVISNTIYCLEESVLSQLQQY 198
PL+E QL N A + I TI LE+S+ + ++Y
Sbjct: 2008 PTGPLREEVEQLENAANELKLKQDEIVATITALEKSIATYKEEY 2051
>pdb|2EL7|A Chain A, Crystal Structure Of Tryptophanyl-Trna Synthetase From
Thermus Thermophilus
pdb|2EL7|B Chain B, Crystal Structure Of Tryptophanyl-Trna Synthetase From
Thermus Thermophilus
Length = 337
Score = 28.5 bits (62), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 29/65 (44%), Gaps = 2/65 (3%)
Query: 97 QMIKEQQPGDEIVCIIYDEVMYFAEASASQLNVQSIILRTSGAVTVVARLVLFQLKEEGY 156
Q I+ PGD I++ + YFA + + R +G T V + +LF E
Sbjct: 225 QRIRLSDPGDPERTILFTYLSYFAPKDLVEALKEE--YRKAGVGTYVVKRILFDHLMEAL 282
Query: 157 NPLKE 161
P++E
Sbjct: 283 RPIRE 287
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.134 0.396
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,705,005
Number of Sequences: 62578
Number of extensions: 523005
Number of successful extensions: 1596
Number of sequences better than 100.0: 23
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 1562
Number of HSP's gapped (non-prelim): 31
length of query: 424
length of database: 14,973,337
effective HSP length: 101
effective length of query: 323
effective length of database: 8,652,959
effective search space: 2794905757
effective search space used: 2794905757
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)