Query 046167
Match_columns 424
No_of_seqs 120 out of 1158
Neff 9.9
Searched_HMMs 46136
Date Fri Mar 29 09:21:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046167.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/046167hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02410 UDP-glucoronosyl/UDP- 100.0 2.8E-62 6.1E-67 473.5 44.9 414 8-424 7-451 (451)
2 PLN02555 limonoid glucosyltran 100.0 6.8E-59 1.5E-63 451.4 42.5 411 8-423 7-469 (480)
3 PLN02173 UDP-glucosyl transfer 100.0 8.1E-59 1.8E-63 447.3 42.4 405 4-422 1-447 (449)
4 PLN02562 UDP-glycosyltransfera 100.0 3.3E-58 7.1E-63 446.5 41.6 401 4-422 3-448 (448)
5 PLN02210 UDP-glucosyl transfer 100.0 5E-58 1.1E-62 445.7 41.3 404 1-422 1-454 (456)
6 PLN02670 transferase, transfer 100.0 5.1E-58 1.1E-62 443.8 39.0 404 8-424 6-466 (472)
7 PLN02992 coniferyl-alcohol glu 100.0 3.6E-57 7.9E-62 438.2 42.0 404 6-424 3-470 (481)
8 PLN02448 UDP-glycosyltransfera 100.0 3.6E-57 7.8E-62 442.5 41.0 399 8-423 10-457 (459)
9 PLN02863 UDP-glucoronosyl/UDP- 100.0 1.4E-56 3.1E-61 436.7 41.9 408 8-424 9-472 (477)
10 PLN03007 UDP-glucosyltransfera 100.0 8.5E-57 1.8E-61 442.0 40.8 415 4-424 1-481 (482)
11 PLN02207 UDP-glycosyltransfera 100.0 3.8E-56 8.1E-61 430.4 43.7 408 9-422 4-464 (468)
12 PLN02152 indole-3-acetate beta 100.0 4E-56 8.8E-61 429.3 42.2 407 9-422 4-455 (455)
13 PLN02764 glycosyltransferase f 100.0 3.1E-56 6.8E-61 428.0 40.8 402 4-424 1-446 (453)
14 PLN02554 UDP-glycosyltransfera 100.0 6.5E-56 1.4E-60 435.2 42.8 405 9-423 3-478 (481)
15 PLN00414 glycosyltransferase f 100.0 4.3E-56 9.2E-61 429.9 38.7 404 8-423 4-440 (446)
16 PLN02208 glycosyltransferase f 100.0 1E-55 2.3E-60 426.7 40.7 398 8-424 4-440 (442)
17 PLN00164 glucosyltransferase; 100.0 2.5E-55 5.3E-60 429.5 42.3 405 9-423 4-473 (480)
18 PLN02534 UDP-glycosyltransfera 100.0 1.3E-55 2.9E-60 429.0 39.8 410 8-423 8-486 (491)
19 PLN03004 UDP-glycosyltransfera 100.0 1.5E-55 3.3E-60 424.9 39.8 397 9-413 4-451 (451)
20 PLN02167 UDP-glycosyltransfera 100.0 5.8E-55 1.3E-59 427.8 42.4 410 9-423 4-472 (475)
21 PLN03015 UDP-glucosyl transfer 100.0 8.8E-55 1.9E-59 419.1 41.5 402 9-421 4-466 (470)
22 PHA03392 egt ecdysteroid UDP-g 100.0 7.4E-46 1.6E-50 365.1 29.6 377 9-418 21-462 (507)
23 TIGR01426 MGT glycosyltransfer 100.0 1.4E-43 2.9E-48 343.9 25.4 368 14-422 1-391 (392)
24 PF00201 UDPGT: UDP-glucoronos 100.0 2E-46 4.4E-51 375.0 3.8 363 10-403 2-426 (500)
25 cd03784 GT1_Gtf_like This fami 100.0 4.9E-43 1.1E-47 341.4 21.9 367 9-419 1-400 (401)
26 COG1819 Glycosyl transferases, 100.0 3.1E-40 6.8E-45 316.8 16.2 372 8-422 1-400 (406)
27 KOG1192 UDP-glucuronosyl and U 100.0 8.4E-38 1.8E-42 312.9 19.1 372 9-402 6-438 (496)
28 PRK12446 undecaprenyldiphospho 100.0 1.6E-28 3.6E-33 232.8 27.6 317 10-395 3-335 (352)
29 PF13528 Glyco_trans_1_3: Glyc 99.9 9.4E-26 2E-30 212.9 23.5 304 9-380 1-317 (318)
30 COG0707 MurG UDP-N-acetylgluco 99.9 4.5E-25 9.8E-30 206.8 27.5 307 9-384 1-325 (357)
31 TIGR00661 MJ1255 conserved hyp 99.9 4.7E-23 1E-27 194.2 22.1 301 10-383 1-314 (321)
32 PRK00726 murG undecaprenyldiph 99.9 3.6E-21 7.8E-26 184.6 26.8 343 9-423 2-357 (357)
33 cd03785 GT1_MurG MurG is an N- 99.9 4.5E-20 9.6E-25 176.6 24.9 310 10-383 1-324 (350)
34 TIGR01133 murG undecaprenyldip 99.8 6.8E-18 1.5E-22 161.4 26.0 307 9-383 1-321 (348)
35 TIGR00215 lpxB lipid-A-disacch 99.8 4.2E-18 9E-23 164.0 20.4 349 9-419 6-384 (385)
36 COG4671 Predicted glycosyl tra 99.8 2.6E-17 5.7E-22 147.3 20.3 340 9-401 10-390 (400)
37 PRK13609 diacylglycerol glucos 99.8 2.9E-17 6.2E-22 159.0 19.2 347 4-421 1-369 (380)
38 PRK00025 lpxB lipid-A-disaccha 99.7 9.2E-16 2E-20 148.5 21.1 345 9-422 2-376 (380)
39 TIGR03590 PseG pseudaminic aci 99.7 5.4E-16 1.2E-20 142.6 17.5 253 18-353 13-278 (279)
40 PRK13608 diacylglycerol glucos 99.7 3.7E-15 8E-20 144.4 23.5 165 235-422 200-370 (391)
41 PLN02605 monogalactosyldiacylg 99.6 1.2E-13 2.5E-18 133.6 22.5 114 297-422 265-380 (382)
42 TIGR03492 conserved hypothetic 99.6 4.4E-13 9.5E-18 129.4 25.8 312 18-383 6-364 (396)
43 cd03814 GT1_like_2 This family 99.6 3E-12 6.4E-17 122.5 29.9 334 19-421 14-363 (364)
44 PLN02871 UDP-sulfoquinovose:DA 99.6 9E-12 1.9E-16 123.7 32.2 331 7-395 57-413 (465)
45 PF04101 Glyco_tran_28_C: Glyc 99.5 1.1E-15 2.4E-20 130.0 -1.0 134 239-384 1-145 (167)
46 cd03823 GT1_ExpE7_like This fa 99.5 4.6E-11 9.9E-16 113.9 28.2 308 10-384 1-330 (359)
47 cd03818 GT1_ExpC_like This fam 99.5 3.2E-11 6.8E-16 117.5 27.3 337 10-384 1-367 (396)
48 cd04962 GT1_like_5 This family 99.5 6.4E-11 1.4E-15 114.1 26.5 350 9-423 1-370 (371)
49 PRK10307 putative glycosyl tra 99.4 1.6E-10 3.5E-15 113.1 28.9 366 9-423 1-407 (412)
50 TIGR03449 mycothiol_MshA UDP-N 99.4 2.4E-10 5.1E-15 111.7 27.7 357 18-422 19-400 (405)
51 cd03794 GT1_wbuB_like This fam 99.4 1.8E-10 3.8E-15 110.9 26.5 328 10-384 1-366 (394)
52 cd03801 GT1_YqgM_like This fam 99.4 7.6E-10 1.6E-14 105.3 30.3 337 19-421 14-373 (374)
53 cd03816 GT1_ALG1_like This fam 99.4 1.8E-10 3.9E-15 112.6 25.7 344 8-397 3-399 (415)
54 COG3980 spsG Spore coat polysa 99.4 1.4E-10 3E-15 101.5 20.9 290 9-395 1-302 (318)
55 TIGR02468 sucrsPsyn_pln sucros 99.4 6.7E-10 1.5E-14 115.9 28.3 391 8-422 169-669 (1050)
56 PF03033 Glyco_transf_28: Glyc 99.3 2.5E-13 5.4E-18 111.8 1.9 126 11-140 1-133 (139)
57 cd03808 GT1_cap1E_like This fa 99.3 1.1E-09 2.4E-14 103.9 27.4 316 10-384 1-330 (359)
58 cd03800 GT1_Sucrose_synthase T 99.3 6E-10 1.3E-14 108.3 26.0 325 18-384 20-369 (398)
59 cd03817 GT1_UGDG_like This fam 99.3 2.5E-09 5.4E-14 102.3 29.9 319 10-384 1-344 (374)
60 TIGR02472 sucr_P_syn_N sucrose 99.3 3.6E-09 7.7E-14 104.4 29.4 363 20-421 27-438 (439)
61 cd03820 GT1_amsD_like This fam 99.3 3.4E-09 7.3E-14 100.2 27.4 295 19-384 13-320 (348)
62 cd03798 GT1_wlbH_like This fam 99.3 7.5E-09 1.6E-13 98.7 29.0 345 18-423 13-376 (377)
63 cd03825 GT1_wcfI_like This fam 99.3 2.2E-09 4.7E-14 103.0 25.1 114 295-423 242-364 (365)
64 cd03796 GT1_PIG-A_like This fa 99.3 3.2E-09 7E-14 103.4 26.4 340 10-422 1-366 (398)
65 cd03795 GT1_like_4 This family 99.3 1.9E-09 4.1E-14 103.0 24.1 310 10-384 1-333 (357)
66 cd03819 GT1_WavL_like This fam 99.2 6.1E-09 1.3E-13 99.5 25.8 318 18-397 9-346 (355)
67 PRK05749 3-deoxy-D-manno-octul 99.2 7.1E-09 1.5E-13 101.9 25.1 80 299-384 304-389 (425)
68 cd03805 GT1_ALG2_like This fam 99.2 2.3E-08 4.9E-13 97.2 28.2 80 296-384 279-365 (392)
69 PF04007 DUF354: Protein of un 99.2 3.4E-09 7.4E-14 98.8 21.0 292 18-382 9-309 (335)
70 cd03822 GT1_ecORF704_like This 99.2 2.3E-08 4.9E-13 95.7 26.9 110 295-421 245-365 (366)
71 cd03821 GT1_Bme6_like This fam 99.2 7.5E-08 1.6E-12 92.0 30.2 79 296-384 261-346 (375)
72 cd03802 GT1_AviGT4_like This f 99.2 1.2E-08 2.6E-13 96.7 23.6 155 239-421 172-334 (335)
73 cd05844 GT1_like_7 Glycosyltra 99.2 2.5E-08 5.5E-13 95.8 26.0 82 295-384 243-337 (367)
74 cd03786 GT1_UDP-GlcNAc_2-Epime 99.2 8.6E-10 1.9E-14 106.1 15.5 134 236-383 197-337 (363)
75 TIGR02470 sucr_synth sucrose s 99.1 2.1E-07 4.6E-12 95.4 32.1 348 9-381 256-707 (784)
76 cd04951 GT1_WbdM_like This fam 99.1 2.8E-08 6.1E-13 95.0 23.9 111 296-422 244-359 (360)
77 cd03799 GT1_amsK_like This is 99.1 6.5E-08 1.4E-12 92.3 25.2 82 295-384 234-328 (355)
78 cd04955 GT1_like_6 This family 99.1 4.6E-08 9.9E-13 93.8 23.6 334 19-421 15-362 (363)
79 TIGR02149 glgA_Coryne glycogen 99.1 6.9E-08 1.5E-12 93.6 24.7 164 237-423 200-386 (388)
80 TIGR00236 wecB UDP-N-acetylglu 99.1 7.7E-09 1.7E-13 99.5 17.6 345 9-424 1-364 (365)
81 cd03807 GT1_WbnK_like This fam 99.0 3.5E-07 7.7E-12 87.0 27.5 109 297-421 251-364 (365)
82 PRK14089 ipid-A-disaccharide s 99.0 4.3E-08 9.2E-13 92.3 19.9 318 9-419 2-346 (347)
83 PLN02275 transferase, transfer 99.0 3.1E-07 6.8E-12 88.5 26.5 322 9-381 5-371 (371)
84 cd03811 GT1_WabH_like This fam 99.0 1.5E-07 3.2E-12 88.9 23.7 311 10-383 1-332 (353)
85 PRK09922 UDP-D-galactose:(gluc 99.0 7.5E-08 1.6E-12 92.5 21.4 137 238-385 180-326 (359)
86 PRK15427 colanic acid biosynth 99.0 6.3E-07 1.4E-11 87.4 27.1 163 237-424 221-406 (406)
87 TIGR03088 stp2 sugar transfera 99.0 1.1E-07 2.3E-12 91.9 21.0 112 297-423 255-372 (374)
88 PLN00142 sucrose synthase 98.9 3.6E-07 7.9E-12 93.8 24.5 79 297-383 642-736 (815)
89 PLN02316 synthase/transferase 98.9 5.4E-07 1.2E-11 94.8 24.5 118 296-422 899-1032(1036)
90 cd03792 GT1_Trehalose_phosphor 98.9 3.8E-07 8.1E-12 88.1 21.9 111 296-423 251-371 (372)
91 cd03809 GT1_mtfB_like This fam 98.8 9.3E-07 2E-11 84.4 23.0 90 295-397 251-347 (365)
92 PLN02846 digalactosyldiacylgly 98.8 3.4E-06 7.3E-11 82.3 26.3 72 301-383 288-363 (462)
93 cd03812 GT1_CapH_like This fam 98.8 7.3E-07 1.6E-11 85.3 21.8 136 236-384 190-332 (358)
94 cd03806 GT1_ALG11_like This fa 98.8 2.5E-06 5.4E-11 83.6 25.7 81 295-384 303-393 (419)
95 PRK00654 glgA glycogen synthas 98.8 8.2E-07 1.8E-11 88.3 22.3 132 237-382 281-427 (466)
96 TIGR03087 stp1 sugar transfera 98.8 1.4E-06 3.1E-11 84.8 22.8 110 296-422 279-395 (397)
97 PRK15179 Vi polysaccharide bio 98.8 7.9E-06 1.7E-10 83.9 28.7 113 296-422 573-692 (694)
98 cd03804 GT1_wbaZ_like This fam 98.8 6.7E-07 1.5E-11 85.5 19.9 127 240-384 197-327 (351)
99 TIGR02095 glgA glycogen/starch 98.8 1.6E-06 3.6E-11 86.4 22.7 160 237-423 290-472 (473)
100 TIGR03568 NeuC_NnaA UDP-N-acet 98.7 1.2E-06 2.6E-11 84.0 19.3 317 9-382 1-338 (365)
101 PRK01021 lpxB lipid-A-disaccha 98.7 8.5E-06 1.9E-10 80.8 25.0 345 9-421 227-603 (608)
102 cd03791 GT1_Glycogen_synthase_ 98.7 3.9E-06 8.4E-11 83.9 23.4 166 237-422 295-475 (476)
103 PRK15484 lipopolysaccharide 1, 98.7 2.9E-05 6.3E-10 75.1 27.6 116 294-423 254-377 (380)
104 PRK10125 putative glycosyl tra 98.6 1.2E-05 2.5E-10 78.4 23.1 154 240-423 243-404 (405)
105 cd03813 GT1_like_3 This family 98.6 7.1E-06 1.5E-10 81.8 21.7 82 296-384 353-443 (475)
106 PLN02949 transferase, transfer 98.6 6E-05 1.3E-09 74.5 26.5 112 295-422 333-455 (463)
107 PRK14098 glycogen synthase; Pr 98.5 4.5E-05 9.8E-10 76.1 25.1 117 294-423 359-485 (489)
108 cd04950 GT1_like_1 Glycosyltra 98.5 9.9E-05 2.1E-09 71.3 26.9 109 296-423 253-371 (373)
109 PF02350 Epimerase_2: UDP-N-ac 98.5 1E-06 2.2E-11 83.6 12.3 244 89-383 57-318 (346)
110 COG1519 KdtA 3-deoxy-D-manno-o 98.5 0.00033 7.2E-09 66.1 26.6 328 11-423 51-417 (419)
111 PRK15490 Vi polysaccharide bio 98.4 0.00026 5.6E-09 70.1 26.7 113 296-423 454-575 (578)
112 PF02684 LpxB: Lipid-A-disacch 98.4 9.5E-05 2.1E-09 70.2 22.6 327 11-403 1-357 (373)
113 PLN02501 digalactosyldiacylgly 98.4 0.00011 2.5E-09 73.8 23.0 76 298-384 602-682 (794)
114 COG0763 LpxB Lipid A disacchar 98.3 0.00059 1.3E-08 63.7 23.7 348 9-422 2-380 (381)
115 KOG3349 Predicted glycosyltran 98.3 6.2E-06 1.4E-10 65.5 8.4 117 238-366 4-134 (170)
116 TIGR02918 accessory Sec system 98.2 0.0006 1.3E-08 68.1 23.6 164 239-423 320-499 (500)
117 cd04946 GT1_AmsK_like This fam 98.2 4.1E-05 8.8E-10 74.8 14.3 133 237-384 229-378 (407)
118 cd04949 GT1_gtfA_like This fam 98.2 9.3E-05 2E-09 71.3 16.5 99 296-399 260-362 (372)
119 cd01635 Glycosyltransferase_GT 98.1 0.00021 4.6E-09 63.0 16.9 48 296-345 160-215 (229)
120 PF00534 Glycos_transf_1: Glyc 98.1 7.1E-06 1.5E-10 69.8 6.4 81 295-383 71-158 (172)
121 PRK14099 glycogen synthase; Pr 98.1 0.0021 4.6E-08 64.1 24.2 116 296-423 349-478 (485)
122 PF13844 Glyco_transf_41: Glyc 98.0 0.00015 3.2E-09 70.5 14.6 177 235-424 282-467 (468)
123 PLN02939 transferase, transfer 98.0 0.0017 3.6E-08 68.1 22.4 82 297-382 837-930 (977)
124 COG0381 WecB UDP-N-acetylgluco 97.9 0.00049 1.1E-08 64.4 14.4 348 9-423 4-370 (383)
125 COG5017 Uncharacterized conser 97.8 0.00013 2.9E-09 57.0 8.6 125 240-382 2-141 (161)
126 PRK10017 colanic acid biosynth 97.7 0.056 1.2E-06 52.8 30.6 346 9-402 1-409 (426)
127 COG1817 Uncharacterized protei 97.7 0.0035 7.6E-08 56.6 16.8 110 16-141 7-117 (346)
128 PRK09814 beta-1,6-galactofuran 97.6 0.00028 6E-09 67.0 8.9 112 295-420 205-332 (333)
129 TIGR02193 heptsyl_trn_I lipopo 97.5 0.0071 1.5E-07 57.0 17.3 304 10-381 1-319 (319)
130 PF13692 Glyco_trans_1_4: Glyc 97.5 0.00029 6.3E-09 57.1 6.2 80 296-383 52-135 (135)
131 PF13477 Glyco_trans_4_2: Glyc 97.4 0.00092 2E-08 54.5 8.7 105 10-138 1-109 (139)
132 PRK10422 lipopolysaccharide co 97.2 0.028 6E-07 53.8 17.6 111 4-134 1-114 (352)
133 TIGR02400 trehalose_OtsA alpha 97.1 0.041 9E-07 54.4 17.9 104 303-423 342-456 (456)
134 KOG1111 N-acetylglucosaminyltr 97.1 0.077 1.7E-06 49.2 17.8 46 294-341 249-301 (426)
135 PF06258 Mito_fiss_Elm1: Mitoc 97.0 0.045 9.7E-07 51.1 16.0 204 107-366 57-282 (311)
136 PHA01633 putative glycosyl tra 96.9 0.0096 2.1E-07 56.0 10.7 85 295-383 199-307 (335)
137 PHA01630 putative group 1 glyc 96.8 0.047 1E-06 51.7 14.5 114 303-424 196-331 (331)
138 PRK10916 ADP-heptose:LPS hepto 96.7 0.16 3.4E-06 48.5 18.0 103 9-133 1-106 (348)
139 COG4370 Uncharacterized protei 96.7 0.16 3.5E-06 45.9 16.0 106 303-423 301-409 (412)
140 KOG4626 O-linked N-acetylgluco 96.7 0.057 1.2E-06 53.4 14.0 150 235-402 756-917 (966)
141 PRK10964 ADP-heptose:LPS hepto 96.6 0.12 2.7E-06 48.6 16.4 50 9-58 1-52 (322)
142 PF13524 Glyco_trans_1_2: Glyc 96.6 0.017 3.7E-07 43.2 8.3 83 322-419 9-92 (92)
143 TIGR02201 heptsyl_trn_III lipo 96.6 0.46 9.9E-06 45.2 20.1 105 10-133 1-108 (344)
144 PF13579 Glyco_trans_4_4: Glyc 96.4 0.0059 1.3E-07 50.4 5.5 97 24-137 6-105 (160)
145 KOG2941 Beta-1,4-mannosyltrans 96.4 0.78 1.7E-05 42.5 27.3 349 8-396 12-423 (444)
146 cd03788 GT1_TPS Trehalose-6-Ph 96.4 0.42 9.2E-06 47.5 19.0 103 302-421 346-459 (460)
147 TIGR02195 heptsyl_trn_II lipop 96.3 0.27 6E-06 46.5 16.8 101 10-132 1-104 (334)
148 cd03789 GT1_LPS_heptosyltransf 96.3 0.31 6.8E-06 44.8 16.4 101 10-132 1-104 (279)
149 COG3914 Spy Predicted O-linked 96.2 0.11 2.3E-06 51.3 13.1 107 235-348 427-542 (620)
150 COG0859 RfaF ADP-heptose:LPS h 96.0 0.59 1.3E-05 44.3 17.3 263 9-341 2-276 (334)
151 PF13439 Glyco_transf_4: Glyco 95.8 0.18 4E-06 42.1 11.9 102 18-140 11-113 (177)
152 PF06722 DUF1205: Protein of u 95.5 0.018 3.8E-07 43.5 3.8 52 226-277 29-85 (97)
153 PF01975 SurE: Survival protei 95.4 0.12 2.5E-06 44.7 9.1 115 9-139 1-136 (196)
154 PF12000 Glyco_trans_4_3: Gkyc 95.2 0.23 5E-06 41.7 9.7 95 34-136 1-96 (171)
155 PF08660 Alg14: Oligosaccharid 95.1 0.2 4.4E-06 42.2 9.3 111 14-137 3-130 (170)
156 PLN03063 alpha,alpha-trehalose 94.5 0.34 7.3E-06 51.5 11.2 97 309-422 371-476 (797)
157 COG3660 Predicted nucleoside-d 94.4 3.6 7.7E-05 36.8 18.2 250 9-341 1-271 (329)
158 PRK14501 putative bifunctional 93.8 0.3 6.4E-06 51.6 9.1 110 301-423 346-462 (726)
159 COG0438 RfaG Glycosyltransfera 92.9 4.6 9.9E-05 37.2 15.1 79 297-383 257-342 (381)
160 TIGR02398 gluc_glyc_Psyn gluco 92.8 1.6 3.4E-05 43.5 11.8 106 300-422 365-481 (487)
161 PRK13932 stationary phase surv 92.5 3.3 7.1E-05 37.4 12.4 112 8-137 5-134 (257)
162 COG1618 Predicted nucleotide k 92.3 0.37 8E-06 39.7 5.6 57 8-65 5-61 (179)
163 TIGR00715 precor6x_red precorr 91.8 1 2.2E-05 40.8 8.4 33 309-341 191-229 (256)
164 PRK13933 stationary phase surv 91.7 4.6 0.0001 36.4 12.5 39 9-49 1-39 (253)
165 TIGR00087 surE 5'/3'-nucleotid 91.4 4.7 0.0001 36.2 12.2 110 9-137 1-129 (244)
166 TIGR03713 acc_sec_asp1 accesso 91.2 0.5 1.1E-05 47.6 6.4 75 297-384 409-489 (519)
167 PF10649 DUF2478: Protein of u 90.5 4.2 9E-05 33.7 10.0 113 13-139 3-134 (159)
168 COG0496 SurE Predicted acid ph 90.4 1.1 2.4E-05 40.0 7.0 110 9-138 1-127 (252)
169 PRK13982 bifunctional SbtC-lik 89.8 1.2 2.6E-05 43.9 7.5 53 8-63 256-320 (475)
170 PRK13935 stationary phase surv 89.4 9.4 0.0002 34.4 12.3 40 9-50 1-40 (253)
171 PF04127 DFP: DNA / pantothena 89.0 0.87 1.9E-05 39.0 5.2 52 9-63 4-67 (185)
172 PRK00346 surE 5'(3')-nucleotid 88.9 10 0.00022 34.2 12.1 108 9-137 1-125 (250)
173 KOG1387 Glycosyltransferase [C 88.6 22 0.00047 33.4 23.7 271 107-403 150-446 (465)
174 PF01075 Glyco_transf_9: Glyco 87.8 3.7 8E-05 36.8 8.9 95 235-341 103-208 (247)
175 PRK13934 stationary phase surv 87.7 15 0.00032 33.4 12.4 40 9-50 1-40 (266)
176 PF02374 ArsA_ATPase: Anion-tr 87.5 1.2 2.6E-05 41.6 5.6 40 9-48 1-41 (305)
177 COG0003 ArsA Predicted ATPase 87.4 7.3 0.00016 36.5 10.6 42 9-50 2-44 (322)
178 TIGR02919 accessory Sec system 86.9 1.4 3E-05 43.4 5.9 89 297-395 328-421 (438)
179 PF02951 GSH-S_N: Prokaryotic 86.8 1.2 2.5E-05 35.1 4.3 37 9-45 1-40 (119)
180 PF02310 B12-binding: B12 bind 86.4 4.8 0.0001 31.4 7.9 36 9-44 1-36 (121)
181 COG2894 MinD Septum formation 84.7 8.1 0.00018 33.8 8.6 41 10-50 3-45 (272)
182 PF09314 DUF1972: Domain of un 84.5 25 0.00054 30.1 12.6 54 10-63 3-62 (185)
183 cd03793 GT1_Glycogen_synthase_ 84.4 2.4 5.2E-05 42.8 6.2 75 306-383 467-552 (590)
184 cd02067 B12-binding B12 bindin 83.9 1.7 3.7E-05 34.1 4.1 36 10-45 1-36 (119)
185 PRK09620 hypothetical protein; 83.3 2.7 5.8E-05 37.4 5.5 37 9-45 4-52 (229)
186 PRK02261 methylaspartate mutas 83.3 2.7 5.7E-05 34.1 5.0 37 9-45 4-40 (137)
187 PF02441 Flavoprotein: Flavopr 83.2 2.5 5.3E-05 33.8 4.8 38 9-47 1-38 (129)
188 cd00561 CobA_CobO_BtuR ATP:cor 82.9 14 0.00031 30.7 9.3 96 10-117 4-105 (159)
189 COG2910 Putative NADH-flavin r 82.8 1.4 3E-05 37.2 3.2 35 9-48 1-36 (211)
190 PF12146 Hydrolase_4: Putative 82.5 2.9 6.4E-05 30.1 4.5 37 8-44 15-51 (79)
191 PRK06732 phosphopantothenate-- 82.3 1.5 3.3E-05 39.0 3.6 37 9-45 1-49 (229)
192 PF04464 Glyphos_transf: CDP-G 81.9 1.2 2.7E-05 42.7 3.1 332 8-418 13-368 (369)
193 PF07429 Glyco_transf_56: 4-al 81.7 17 0.00037 34.2 10.2 82 297-383 245-333 (360)
194 cd01980 Chlide_reductase_Y Chl 81.5 12 0.00026 36.7 9.8 27 107-136 350-376 (416)
195 cd00550 ArsA_ATPase Oxyanion-t 81.3 14 0.00031 33.4 9.6 38 11-48 3-40 (254)
196 COG1703 ArgK Putative periplas 81.1 37 0.00079 31.4 11.8 42 9-50 52-93 (323)
197 PRK05986 cob(I)alamin adenolsy 81.1 22 0.00048 30.5 10.0 97 9-117 23-125 (191)
198 TIGR02015 BchY chlorophyllide 80.2 12 0.00026 36.7 9.3 95 9-135 286-380 (422)
199 PRK02797 4-alpha-L-fucosyltran 79.7 23 0.00051 32.8 10.2 80 297-381 206-292 (322)
200 COG1484 DnaC DNA replication p 79.1 12 0.00027 33.8 8.4 36 9-44 106-141 (254)
201 KOG0853 Glycosyltransferase [C 77.8 2.7 5.9E-05 41.5 3.9 61 327-395 381-442 (495)
202 cd01974 Nitrogenase_MoFe_beta 77.8 21 0.00044 35.3 10.2 93 9-135 304-402 (435)
203 PRK08305 spoVFB dipicolinate s 77.1 4 8.7E-05 35.2 4.4 37 9-45 6-42 (196)
204 PRK13931 stationary phase surv 76.9 55 0.0012 29.7 11.8 110 9-137 1-130 (261)
205 PF05159 Capsule_synth: Capsul 76.8 7.7 0.00017 35.4 6.5 40 301-343 187-226 (269)
206 PF02606 LpxK: Tetraacyldisacc 76.7 8.1 0.00018 36.4 6.7 37 14-50 43-79 (326)
207 PLN03064 alpha,alpha-trehalose 74.3 31 0.00067 37.4 10.9 101 305-422 448-560 (934)
208 PRK01077 cobyrinic acid a,c-di 73.5 19 0.0004 35.8 8.7 35 10-44 5-40 (451)
209 KOG1250 Threonine/serine dehyd 72.6 94 0.002 29.9 15.3 33 107-139 114-148 (457)
210 TIGR00708 cobA cob(I)alamin ad 72.0 22 0.00048 30.0 7.5 96 9-117 6-107 (173)
211 PF06506 PrpR_N: Propionate ca 71.9 9.6 0.00021 32.3 5.5 111 19-138 16-153 (176)
212 PRK11519 tyrosine kinase; Prov 71.0 1.1E+02 0.0025 32.4 14.2 38 8-45 525-564 (719)
213 cd01965 Nitrogenase_MoFe_beta_ 70.6 14 0.00031 36.3 7.1 99 8-136 299-397 (428)
214 PF01210 NAD_Gly3P_dh_N: NAD-d 70.4 3.3 7.1E-05 34.4 2.2 31 10-45 1-31 (157)
215 PF10093 DUF2331: Uncharacteri 69.4 54 0.0012 31.4 10.2 163 246-419 188-373 (374)
216 smart00851 MGS MGS-like domain 69.3 12 0.00026 27.5 4.9 79 25-133 2-90 (90)
217 COG1797 CobB Cobyrinic acid a, 68.5 5.6 0.00012 38.5 3.5 35 10-44 2-37 (451)
218 PF00862 Sucrose_synth: Sucros 68.5 11 0.00024 37.2 5.5 155 18-188 295-481 (550)
219 COG0143 MetG Methionyl-tRNA sy 68.2 9.9 0.00021 38.5 5.4 38 10-47 6-53 (558)
220 TIGR01182 eda Entner-Doudoroff 68.0 82 0.0018 27.4 13.0 107 94-249 72-180 (204)
221 PRK03359 putative electron tra 68.0 9.2 0.0002 34.6 4.7 31 107-137 112-148 (256)
222 PF06925 MGDG_synth: Monogalac 67.9 14 0.0003 31.0 5.6 24 21-44 1-25 (169)
223 PRK12342 hypothetical protein; 67.7 9.5 0.00021 34.4 4.7 92 25-137 40-145 (254)
224 COG0541 Ffh Signal recognition 67.6 30 0.00065 33.6 8.1 38 8-45 100-137 (451)
225 TIGR00682 lpxK tetraacyldisacc 67.4 13 0.00028 34.7 5.7 34 15-48 37-70 (311)
226 TIGR01283 nifE nitrogenase mol 67.3 51 0.0011 32.7 10.3 26 107-135 395-420 (456)
227 TIGR01285 nifN nitrogenase mol 67.3 35 0.00075 33.7 8.9 87 8-134 311-397 (432)
228 cd02070 corrinoid_protein_B12- 67.2 10 0.00023 32.9 4.8 38 8-45 82-119 (201)
229 PRK07952 DNA replication prote 66.7 32 0.00068 30.9 7.8 35 10-44 101-135 (244)
230 PRK06179 short chain dehydroge 66.5 39 0.00085 30.5 8.8 33 10-45 5-37 (270)
231 PRK08057 cobalt-precorrin-6x r 65.6 69 0.0015 28.8 9.8 32 9-45 3-34 (248)
232 PRK13768 GTPase; Provisional 65.1 21 0.00045 32.3 6.5 37 10-46 4-40 (253)
233 PRK05632 phosphate acetyltrans 65.0 1.1E+02 0.0023 32.4 12.5 102 10-138 4-116 (684)
234 cd02071 MM_CoA_mut_B12_BD meth 64.5 11 0.00025 29.6 4.2 36 10-45 1-36 (122)
235 PRK13789 phosphoribosylamine-- 64.4 20 0.00043 35.3 6.7 33 8-45 4-36 (426)
236 COG2861 Uncharacterized protei 64.3 77 0.0017 28.2 9.3 36 91-133 140-178 (250)
237 TIGR02852 spore_dpaB dipicolin 64.0 9.4 0.0002 32.7 3.8 36 10-45 2-37 (187)
238 PRK10867 signal recognition pa 63.2 43 0.00094 32.9 8.6 38 8-45 100-138 (433)
239 cd03466 Nitrogenase_NifN_2 Nit 63.2 27 0.00059 34.4 7.4 26 107-135 372-397 (429)
240 TIGR00379 cobB cobyrinic acid 62.9 42 0.00092 33.3 8.7 106 11-138 2-120 (449)
241 PRK06835 DNA replication prote 62.6 39 0.00084 31.9 7.9 36 9-44 184-219 (329)
242 TIGR01425 SRP54_euk signal rec 62.6 31 0.00068 33.8 7.5 38 9-46 101-138 (429)
243 PF00731 AIRC: AIR carboxylase 62.3 88 0.0019 25.7 12.9 137 239-403 2-149 (150)
244 KOG1209 1-Acyl dihydroxyaceton 62.1 11 0.00024 32.8 3.7 38 1-44 1-40 (289)
245 COG0859 RfaF ADP-heptose:LPS h 62.1 26 0.00057 33.1 6.9 98 9-138 176-280 (334)
246 PRK13234 nifH nitrogenase redu 62.0 15 0.00032 34.1 5.1 38 10-47 6-43 (295)
247 PF02702 KdpD: Osmosensitive K 62.0 13 0.00029 32.0 4.3 38 8-45 5-42 (211)
248 CHL00072 chlL photochlorophyll 61.6 15 0.00032 34.0 5.0 39 9-47 1-39 (290)
249 COG4394 Uncharacterized protei 61.6 1.3E+02 0.0029 27.6 11.5 30 16-45 11-41 (370)
250 cd01968 Nitrogenase_NifE_I Nit 61.5 70 0.0015 31.2 9.9 25 107-134 356-380 (410)
251 PRK14478 nitrogenase molybdenu 61.3 62 0.0013 32.4 9.6 32 9-45 325-356 (475)
252 PRK01175 phosphoribosylformylg 61.2 77 0.0017 28.8 9.3 56 9-67 4-59 (261)
253 KOG3339 Predicted glycosyltran 60.9 36 0.00078 28.9 6.4 24 12-35 41-64 (211)
254 PRK12377 putative replication 60.8 1.3E+02 0.0028 27.1 11.5 96 10-142 103-210 (248)
255 cd02037 MRP-like MRP (Multiple 60.7 37 0.00079 28.3 6.9 32 14-45 6-37 (169)
256 PF04413 Glycos_transf_N: 3-De 60.5 18 0.0004 30.9 5.0 98 11-137 23-127 (186)
257 COG1663 LpxK Tetraacyldisaccha 60.4 36 0.00078 32.0 7.1 35 14-48 55-89 (336)
258 PRK00784 cobyric acid synthase 60.1 1.3E+02 0.0027 30.3 11.6 35 10-44 4-39 (488)
259 TIGR03029 EpsG chain length de 60.0 1.4E+02 0.003 27.2 13.1 37 9-45 103-141 (274)
260 TIGR02370 pyl_corrinoid methyl 59.9 16 0.00036 31.5 4.6 38 8-45 84-121 (197)
261 cd01981 Pchlide_reductase_B Pc 59.8 91 0.002 30.7 10.4 27 107-136 370-396 (430)
262 PRK06921 hypothetical protein; 59.7 1.4E+02 0.003 27.2 10.8 36 9-44 118-154 (266)
263 KOG0780 Signal recognition par 59.6 15 0.00032 35.1 4.4 37 9-45 102-138 (483)
264 PRK05784 phosphoribosylamine-- 58.9 41 0.00089 33.7 7.8 31 9-44 1-33 (486)
265 PF01075 Glyco_transf_9: Glyco 58.7 91 0.002 27.7 9.6 94 9-138 106-212 (247)
266 TIGR02114 coaB_strep phosphopa 58.4 9.5 0.00021 33.9 3.0 35 10-44 1-47 (227)
267 TIGR00345 arsA arsenite-activa 58.2 96 0.0021 28.5 9.7 24 26-49 3-26 (284)
268 PRK06849 hypothetical protein; 58.1 19 0.00042 34.8 5.3 34 8-45 4-37 (389)
269 COG2185 Sbm Methylmalonyl-CoA 58.1 16 0.00034 29.7 3.8 37 8-44 12-48 (143)
270 TIGR02128 G6PI_arch bifunction 58.1 73 0.0016 29.8 8.9 117 10-136 67-185 (308)
271 cd01423 MGS_CPS_I_III Methylgl 57.8 26 0.00057 27.1 5.1 94 13-133 4-106 (116)
272 PRK07206 hypothetical protein; 57.7 33 0.00072 33.5 7.0 31 10-45 4-34 (416)
273 cd00532 MGS-like MGS-like doma 57.6 22 0.00047 27.5 4.6 85 21-134 10-105 (112)
274 PF03808 Glyco_tran_WecB: Glyc 57.6 59 0.0013 27.3 7.6 92 25-141 37-138 (172)
275 PRK08116 hypothetical protein; 57.6 1.4E+02 0.0031 27.2 10.6 34 11-44 117-150 (268)
276 COG2109 BtuR ATP:corrinoid ade 57.3 98 0.0021 26.5 8.5 97 10-118 30-133 (198)
277 PRK01906 tetraacyldisaccharide 57.1 23 0.00049 33.6 5.4 36 14-49 64-99 (338)
278 COG0297 GlgA Glycogen synthase 57.1 2.2E+02 0.0047 28.6 13.1 169 237-422 293-476 (487)
279 PRK07313 phosphopantothenoylcy 56.8 15 0.00032 31.4 3.8 38 9-47 2-39 (182)
280 TIGR02195 heptsyl_trn_II lipop 56.7 1.7E+02 0.0038 27.4 11.9 99 9-137 175-279 (334)
281 cd02032 Bchl_like This family 56.6 19 0.0004 32.8 4.7 37 9-45 1-37 (267)
282 TIGR01281 DPOR_bchL light-inde 56.1 20 0.00042 32.6 4.7 37 9-45 1-37 (268)
283 PRK14477 bifunctional nitrogen 55.7 86 0.0019 34.3 10.1 94 8-136 320-415 (917)
284 PF00551 Formyl_trans_N: Formy 55.6 22 0.00047 30.2 4.7 33 9-44 1-35 (181)
285 COG0052 RpsB Ribosomal protein 55.4 1.1E+02 0.0025 27.3 9.0 30 108-137 157-188 (252)
286 cd01424 MGS_CPS_II Methylglyox 55.1 26 0.00057 26.8 4.7 85 20-134 10-101 (110)
287 PF08323 Glyco_transf_5: Starc 54.9 16 0.00035 32.8 3.9 25 22-46 19-43 (245)
288 TIGR02201 heptsyl_trn_III lipo 54.7 1.9E+02 0.0041 27.2 11.8 86 24-136 201-287 (344)
289 TIGR00959 ffh signal recogniti 53.8 60 0.0013 31.9 7.8 37 9-45 100-137 (428)
290 PF04321 RmlD_sub_bind: RmlD s 53.7 30 0.00065 31.9 5.6 31 9-44 1-32 (286)
291 COG0552 FtsY Signal recognitio 53.7 1.7E+02 0.0037 27.6 10.2 38 8-45 139-176 (340)
292 TIGR00347 bioD dethiobiotin sy 53.5 1.2E+02 0.0026 25.0 8.8 28 15-42 5-32 (166)
293 PRK06029 3-octaprenyl-4-hydrox 53.5 19 0.0004 30.8 3.8 38 9-47 2-40 (185)
294 cd01425 RPS2 Ribosomal protein 53.2 55 0.0012 28.2 6.8 32 107-138 127-160 (193)
295 PRK05920 aromatic acid decarbo 52.5 20 0.00044 31.1 3.9 38 9-47 4-41 (204)
296 PRK08674 bifunctional phosphog 52.4 1E+02 0.0022 29.2 9.0 58 10-67 79-136 (337)
297 cd03114 ArgK-like The function 52.2 1.3E+02 0.0028 24.5 11.8 35 11-45 2-36 (148)
298 PRK06249 2-dehydropantoate 2-r 52.1 17 0.00037 34.0 3.8 33 8-45 5-37 (313)
299 cd01977 Nitrogenase_VFe_alpha 51.8 51 0.0011 32.3 7.1 25 107-134 358-382 (415)
300 PRK08181 transposase; Validate 51.5 78 0.0017 28.9 7.8 36 9-44 107-142 (269)
301 cd00984 DnaB_C DnaB helicase C 51.4 77 0.0017 28.1 7.8 35 11-45 16-51 (242)
302 TIGR03600 phage_DnaB phage rep 51.1 78 0.0017 31.0 8.4 36 10-45 196-232 (421)
303 PF09001 DUF1890: Domain of un 51.1 18 0.00038 29.0 3.0 26 20-45 11-36 (139)
304 PF02571 CbiJ: Precorrin-6x re 50.8 1.1E+02 0.0023 27.7 8.4 33 309-341 188-225 (249)
305 PRK06395 phosphoribosylamine-- 50.7 94 0.002 30.7 8.8 31 9-44 3-33 (435)
306 TIGR01501 MthylAspMutase methy 50.5 33 0.00071 27.6 4.6 37 9-45 2-38 (134)
307 COG0287 TyrA Prephenate dehydr 50.5 85 0.0018 28.9 7.9 34 9-47 4-37 (279)
308 PRK11823 DNA repair protein Ra 49.5 2.2E+02 0.0048 28.2 11.2 36 10-45 82-117 (446)
309 PRK12815 carB carbamoyl phosph 49.2 1.8E+02 0.0039 32.5 11.5 38 8-45 7-50 (1068)
310 cd02069 methionine_synthase_B1 49.1 31 0.00068 30.2 4.6 38 8-45 88-125 (213)
311 PF01081 Aldolase: KDPG and KH 49.0 1.8E+02 0.0038 25.2 14.8 110 94-253 72-183 (196)
312 cd02034 CooC The accessory pro 48.9 44 0.00095 26.0 5.0 37 10-46 1-37 (116)
313 TIGR02113 coaC_strep phosphopa 48.8 24 0.00052 30.0 3.8 36 10-46 2-37 (177)
314 COG1090 Predicted nucleoside-d 48.8 79 0.0017 28.9 7.0 23 26-48 12-34 (297)
315 PRK09841 cryptic autophosphory 48.7 3.6E+02 0.0078 28.7 14.4 39 8-46 530-570 (726)
316 PF07355 GRDB: Glycine/sarcosi 48.7 28 0.0006 32.8 4.4 22 319-343 272-293 (349)
317 COG1348 NifH Nitrogenase subun 48.6 43 0.00093 29.8 5.2 41 9-49 2-42 (278)
318 TIGR00421 ubiX_pad polyprenyl 48.6 20 0.00043 30.6 3.2 36 10-46 1-36 (181)
319 PF00142 Fer4_NifH: 4Fe-4S iro 48.6 37 0.0008 30.8 5.0 42 9-50 1-42 (273)
320 TIGR01284 alt_nitrog_alph nitr 48.5 1.3E+02 0.0028 30.0 9.4 26 107-135 395-420 (457)
321 PRK10916 ADP-heptose:LPS hepto 48.3 1.4E+02 0.003 28.2 9.4 101 10-136 182-288 (348)
322 PRK02910 light-independent pro 48.2 1.4E+02 0.003 30.3 9.7 26 107-135 362-387 (519)
323 PLN02735 carbamoyl-phosphate s 47.7 1.7E+02 0.0037 32.9 10.9 38 9-46 24-67 (1102)
324 PF02572 CobA_CobO_BtuR: ATP:c 47.3 98 0.0021 26.1 7.1 95 9-117 4-106 (172)
325 PRK08939 primosomal protein Dn 47.2 81 0.0017 29.5 7.3 36 9-44 157-192 (306)
326 cd00672 CysRS_core catalytic c 47.1 38 0.00083 29.7 4.9 29 17-45 34-65 (213)
327 PRK04940 hypothetical protein; 46.8 50 0.0011 28.1 5.3 33 107-139 60-93 (180)
328 PF00148 Oxidored_nitro: Nitro 46.7 1.7E+02 0.0037 28.3 10.0 85 9-134 272-365 (398)
329 COG0801 FolK 7,8-dihydro-6-hyd 46.6 45 0.00097 27.7 4.9 35 239-273 3-37 (160)
330 PRK11199 tyrA bifunctional cho 46.6 84 0.0018 30.3 7.6 31 9-44 99-130 (374)
331 TIGR03837 efp_adjacent_2 conse 46.3 2E+02 0.0043 27.5 9.6 155 246-419 186-371 (371)
332 PF09334 tRNA-synt_1g: tRNA sy 46.0 15 0.00032 35.7 2.3 28 18-45 15-45 (391)
333 PRK10422 lipopolysaccharide co 45.6 1.7E+02 0.0037 27.7 9.6 87 24-137 203-290 (352)
334 PRK06077 fabG 3-ketoacyl-(acyl 45.2 39 0.00085 29.9 4.9 38 1-44 1-38 (252)
335 cd01141 TroA_d Periplasmic bin 44.9 31 0.00068 29.2 4.0 30 107-136 69-100 (186)
336 COG2099 CobK Precorrin-6x redu 44.8 38 0.00082 30.4 4.4 104 25-136 117-230 (257)
337 PF08433 KTI12: Chromatin asso 44.8 1E+02 0.0022 28.2 7.4 104 10-143 3-112 (270)
338 TIGR01861 ANFD nitrogenase iro 44.6 2E+02 0.0043 29.2 10.0 34 8-46 328-362 (513)
339 PRK08506 replicative DNA helic 44.5 1E+02 0.0022 30.8 8.0 36 10-45 194-229 (472)
340 PRK14619 NAD(P)H-dependent gly 43.7 24 0.00051 33.0 3.3 33 8-45 4-36 (308)
341 PF06032 DUF917: Protein of un 43.4 35 0.00076 32.5 4.4 106 14-137 16-125 (353)
342 PRK10964 ADP-heptose:LPS hepto 43.4 79 0.0017 29.6 6.8 38 91-137 244-281 (322)
343 PLN03050 pyridoxine (pyridoxam 43.3 43 0.00094 30.1 4.7 32 9-43 61-94 (246)
344 PLN02929 NADH kinase 43.1 66 0.0014 29.9 5.9 64 316-383 65-137 (301)
345 PRK13185 chlL protochlorophyll 42.7 45 0.00097 30.3 4.9 36 10-45 4-39 (270)
346 PF10820 DUF2543: Protein of u 42.6 79 0.0017 21.9 4.6 39 376-423 39-77 (81)
347 cd03789 GT1_LPS_heptosyltransf 42.3 74 0.0016 29.0 6.3 86 24-137 141-226 (279)
348 PRK05595 replicative DNA helic 42.0 1E+02 0.0022 30.5 7.6 35 11-45 204-239 (444)
349 PF03308 ArgK: ArgK protein; 41.9 2.2E+02 0.0048 25.8 8.8 42 8-49 29-70 (266)
350 PRK04885 ppnK inorganic polyph 41.8 39 0.00084 30.8 4.2 51 317-383 37-93 (265)
351 PF01470 Peptidase_C15: Pyrogl 41.6 55 0.0012 28.4 5.0 26 9-34 1-28 (202)
352 PRK10353 3-methyl-adenine DNA 41.4 91 0.002 26.7 6.1 59 340-401 22-97 (187)
353 cd01983 Fer4_NifH The Fer4_Nif 41.4 62 0.0013 23.2 4.8 33 11-43 2-34 (99)
354 PRK14618 NAD(P)H-dependent gly 41.3 31 0.00067 32.5 3.7 32 9-45 5-36 (328)
355 PRK07984 enoyl-(acyl carrier p 41.1 54 0.0012 29.6 5.1 40 1-44 1-40 (262)
356 COG4635 HemG Flavodoxin [Energ 41.0 49 0.0011 27.4 4.1 54 9-64 1-55 (175)
357 PLN02695 GDP-D-mannose-3',5'-e 40.9 38 0.00082 32.5 4.3 34 7-44 20-53 (370)
358 COG0503 Apt Adenine/guanine ph 40.9 56 0.0012 27.8 4.8 28 107-134 53-82 (179)
359 PRK05579 bifunctional phosphop 40.7 44 0.00095 32.5 4.6 38 9-47 7-44 (399)
360 PRK11914 diacylglycerol kinase 40.6 1.4E+02 0.0031 27.6 8.1 81 239-343 12-96 (306)
361 PRK12921 2-dehydropantoate 2-r 40.5 28 0.0006 32.3 3.2 31 9-44 1-31 (305)
362 PRK07806 short chain dehydroge 40.5 55 0.0012 29.0 5.1 38 1-44 1-38 (248)
363 PF00982 Glyco_transf_20: Glyc 40.1 95 0.0021 31.0 7.0 105 303-422 359-473 (474)
364 cd02040 NifH NifH gene encodes 39.9 50 0.0011 29.9 4.8 37 10-46 3-39 (270)
365 TIGR01369 CPSaseII_lrg carbamo 39.9 2.5E+02 0.0055 31.4 10.9 39 8-46 6-50 (1050)
366 PRK13896 cobyrinic acid a,c-di 39.9 2.2E+02 0.0048 28.1 9.3 36 10-45 3-39 (433)
367 PF05693 Glycogen_syn: Glycoge 39.8 64 0.0014 33.0 5.6 93 305-400 461-566 (633)
368 PRK08265 short chain dehydroge 39.8 57 0.0012 29.3 5.1 39 1-45 1-39 (261)
369 PRK07114 keto-hydroxyglutarate 39.7 2.7E+02 0.0058 24.6 9.5 109 94-249 83-192 (222)
370 PRK13193 pyrrolidone-carboxyla 39.7 85 0.0019 27.4 5.8 26 9-34 1-28 (209)
371 cd07025 Peptidase_S66 LD-Carbo 39.6 53 0.0012 30.2 4.9 73 250-343 46-120 (282)
372 cd02065 B12-binding_like B12 b 39.4 51 0.0011 25.6 4.2 34 11-44 2-35 (125)
373 TIGR02700 flavo_MJ0208 archaeo 39.2 45 0.00097 29.7 4.2 37 11-47 2-40 (234)
374 TIGR03575 selen_PSTK_euk L-ser 39.2 3.5E+02 0.0075 25.7 10.3 36 11-46 2-38 (340)
375 PRK12815 carB carbamoyl phosph 39.2 2.9E+02 0.0063 31.0 11.2 39 8-46 555-599 (1068)
376 PRK06522 2-dehydropantoate 2-r 39.1 37 0.0008 31.4 3.8 32 9-45 1-32 (304)
377 PRK10490 sensor protein KdpD; 39.0 38 0.00083 36.9 4.4 38 8-45 24-61 (895)
378 cd01452 VWA_26S_proteasome_sub 39.0 1.9E+02 0.0042 24.7 7.8 56 10-65 109-175 (187)
379 PRK05579 bifunctional phosphop 38.9 36 0.00077 33.1 3.7 21 25-45 217-237 (399)
380 COG1748 LYS9 Saccharopine dehy 38.9 78 0.0017 30.6 5.9 32 9-45 2-34 (389)
381 cd02033 BchX Chlorophyllide re 38.8 64 0.0014 30.5 5.3 37 9-45 32-68 (329)
382 PRK13604 luxD acyl transferase 38.7 61 0.0013 30.2 5.0 36 8-43 36-71 (307)
383 KOG3062 RNA polymerase II elon 38.6 60 0.0013 28.7 4.6 35 10-44 3-38 (281)
384 PF03853 YjeF_N: YjeF-related 38.4 56 0.0012 27.4 4.5 36 8-44 25-60 (169)
385 PRK06719 precorrin-2 dehydroge 38.4 41 0.00089 27.9 3.6 31 9-44 14-44 (157)
386 TIGR00877 purD phosphoribosyla 38.3 98 0.0021 30.3 6.9 32 9-45 1-32 (423)
387 COG4088 Predicted nucleotide k 38.3 38 0.00083 29.5 3.3 35 11-45 4-38 (261)
388 TIGR02329 propionate_PrpR prop 38.2 1.5E+02 0.0032 30.2 8.0 110 19-137 36-172 (526)
389 TIGR01369 CPSaseII_lrg carbamo 38.1 2.3E+02 0.0051 31.6 10.3 38 8-45 554-597 (1050)
390 TIGR01286 nifK nitrogenase mol 38.0 2.6E+02 0.0055 28.4 9.7 26 107-135 437-462 (515)
391 TIGR00514 accC acetyl-CoA carb 38.0 2.2E+02 0.0048 28.1 9.3 31 10-45 4-34 (449)
392 PRK12446 undecaprenyldiphospho 37.9 94 0.002 29.6 6.4 32 310-341 86-120 (352)
393 PRK08591 acetyl-CoA carboxylas 37.7 2.4E+02 0.0051 27.9 9.5 31 10-45 4-34 (451)
394 PRK13230 nitrogenase reductase 37.6 58 0.0013 29.8 4.8 38 10-47 3-40 (279)
395 PRK13236 nitrogenase reductase 37.5 68 0.0015 29.7 5.3 39 9-47 6-45 (296)
396 TIGR00640 acid_CoA_mut_C methy 37.5 69 0.0015 25.6 4.6 38 8-45 2-39 (132)
397 PF05728 UPF0227: Uncharacteri 37.4 2.6E+02 0.0057 23.9 9.7 31 109-139 61-92 (187)
398 PF00448 SRP54: SRP54-type pro 37.0 68 0.0015 27.7 4.8 37 9-45 2-38 (196)
399 PF03808 Glyco_tran_WecB: Glyc 36.9 2.5E+02 0.0054 23.5 10.8 128 107-273 5-133 (172)
400 PRK08703 short chain dehydroge 36.9 58 0.0013 28.7 4.6 39 1-45 1-39 (239)
401 PRK06552 keto-hydroxyglutarate 36.8 2.2E+02 0.0048 24.9 8.0 106 94-248 80-186 (213)
402 PRK14106 murD UDP-N-acetylmura 36.6 42 0.00091 33.2 4.0 32 9-45 6-37 (450)
403 PF01695 IstB_IS21: IstB-like 36.5 68 0.0015 27.2 4.7 36 9-44 48-83 (178)
404 PRK08760 replicative DNA helic 36.3 1.6E+02 0.0034 29.6 7.8 36 10-45 231-267 (476)
405 PF13450 NAD_binding_8: NAD(P) 36.3 45 0.00097 23.0 3.0 20 25-44 8-27 (68)
406 PRK02649 ppnK inorganic polyph 36.3 46 0.001 31.0 3.9 52 316-383 69-124 (305)
407 cd01121 Sms Sms (bacterial rad 36.1 4.1E+02 0.0088 25.6 11.4 35 11-45 85-119 (372)
408 TIGR02193 heptsyl_trn_I lipopo 36.1 2.9E+02 0.0064 25.5 9.5 98 9-137 180-282 (319)
409 cd01967 Nitrogenase_MoFe_alpha 36.0 2.8E+02 0.0061 26.9 9.6 27 107-136 355-381 (406)
410 PF05014 Nuc_deoxyrib_tr: Nucl 36.0 62 0.0013 24.9 4.1 36 309-344 57-98 (113)
411 PF01497 Peripla_BP_2: Peripla 35.9 57 0.0012 28.6 4.4 32 107-138 60-93 (238)
412 TIGR01918 various_sel_PB selen 35.8 54 0.0012 31.8 4.2 43 319-363 348-392 (431)
413 PRK12475 thiamine/molybdopteri 35.7 1.7E+02 0.0038 27.7 7.7 31 9-44 25-56 (338)
414 TIGR00064 ftsY signal recognit 35.6 76 0.0016 29.0 5.2 37 9-45 73-109 (272)
415 TIGR01917 gly_red_sel_B glycin 35.5 63 0.0014 31.3 4.7 29 107-135 76-114 (431)
416 PF13433 Peripla_BP_5: Peripla 35.4 1.2E+02 0.0026 29.1 6.4 55 9-63 40-100 (363)
417 cd02117 NifH_like This family 35.4 68 0.0015 27.9 4.7 36 10-45 2-37 (212)
418 PRK07067 sorbitol dehydrogenas 35.4 71 0.0015 28.5 5.0 33 10-45 7-39 (257)
419 PRK04328 hypothetical protein; 35.2 3.3E+02 0.0072 24.4 9.9 36 10-45 25-60 (249)
420 PRK13194 pyrrolidone-carboxyla 35.2 1E+02 0.0022 26.9 5.6 27 9-35 1-29 (208)
421 PRK06718 precorrin-2 dehydroge 35.1 3E+02 0.0065 23.8 9.0 143 235-403 9-165 (202)
422 PRK07454 short chain dehydroge 35.1 87 0.0019 27.5 5.5 35 8-45 5-39 (241)
423 PRK06111 acetyl-CoA carboxylas 35.1 3.1E+02 0.0066 27.0 9.8 31 10-45 4-34 (450)
424 CHL00076 chlB photochlorophyll 35.0 54 0.0012 33.2 4.4 26 107-135 374-399 (513)
425 PF04244 DPRP: Deoxyribodipyri 35.0 39 0.00085 29.9 3.1 25 21-45 47-71 (224)
426 PF05225 HTH_psq: helix-turn-h 35.0 50 0.0011 20.7 2.7 26 369-396 1-26 (45)
427 cd07062 Peptidase_S66_mccF_lik 34.9 67 0.0014 30.0 4.8 73 250-343 50-124 (308)
428 PF10083 DUF2321: Uncharacteri 34.7 96 0.0021 25.5 4.9 72 341-421 78-149 (158)
429 PRK05647 purN phosphoribosylgl 34.7 2.5E+02 0.0054 24.3 8.0 52 9-63 2-58 (200)
430 PRK13235 nifH nitrogenase redu 34.7 65 0.0014 29.4 4.6 37 10-46 3-39 (274)
431 COG1066 Sms Predicted ATP-depe 34.6 2.5E+02 0.0054 27.5 8.3 34 11-45 96-129 (456)
432 KOG0081 GTPase Rab27, small G 34.5 1.1E+02 0.0024 25.3 5.2 48 92-141 110-168 (219)
433 PRK00652 lpxK tetraacyldisacch 34.5 77 0.0017 29.9 5.1 39 10-48 51-91 (325)
434 PF03358 FMN_red: NADPH-depend 34.5 69 0.0015 26.0 4.4 36 9-44 1-39 (152)
435 cd00861 ProRS_anticodon_short 34.3 77 0.0017 23.1 4.2 36 9-44 2-39 (94)
436 PF01012 ETF: Electron transfe 34.1 78 0.0017 26.2 4.7 105 11-136 2-122 (164)
437 PRK06079 enoyl-(acyl carrier p 34.1 79 0.0017 28.2 5.1 33 10-44 8-41 (252)
438 PRK07774 short chain dehydroge 34.0 67 0.0014 28.4 4.6 39 1-45 1-39 (250)
439 PRK06114 short chain dehydroge 34.0 84 0.0018 28.0 5.2 32 10-44 9-40 (254)
440 PRK13869 plasmid-partitioning 34.0 65 0.0014 31.4 4.7 38 9-46 121-160 (405)
441 TIGR01380 glut_syn glutathione 33.9 69 0.0015 30.0 4.7 37 9-45 1-40 (312)
442 PRK06321 replicative DNA helic 33.9 2.1E+02 0.0045 28.6 8.3 35 11-45 229-264 (472)
443 cd01147 HemV-2 Metal binding p 33.8 61 0.0013 29.0 4.3 31 107-137 74-107 (262)
444 PRK08462 biotin carboxylase; V 33.8 2.2E+02 0.0047 28.1 8.5 33 9-46 5-37 (445)
445 COG2086 FixA Electron transfer 33.8 69 0.0015 29.1 4.4 30 107-136 111-146 (260)
446 PRK12825 fabG 3-ketoacyl-(acyl 33.7 90 0.002 27.3 5.4 39 1-45 1-39 (249)
447 PRK03372 ppnK inorganic polyph 33.6 63 0.0014 30.2 4.3 52 316-383 73-128 (306)
448 PRK12826 3-ketoacyl-(acyl-carr 33.6 97 0.0021 27.3 5.6 39 1-45 1-39 (251)
449 cd06533 Glyco_transf_WecG_TagA 33.6 1.4E+02 0.0031 24.9 6.2 87 25-135 35-131 (171)
450 TIGR01278 DPOR_BchB light-inde 33.5 58 0.0013 32.9 4.4 27 107-136 364-390 (511)
451 PRK08229 2-dehydropantoate 2-r 33.5 41 0.0009 31.7 3.2 32 9-45 3-34 (341)
452 COG2120 Uncharacterized protei 33.5 75 0.0016 28.4 4.7 38 8-45 10-47 (237)
453 cd01976 Nitrogenase_MoFe_alpha 33.4 50 0.0011 32.5 3.8 27 107-136 369-395 (421)
454 PRK12311 rpsB 30S ribosomal pr 33.3 1.7E+02 0.0036 27.6 7.0 32 107-138 152-185 (326)
455 TIGR02931 anfK_nitrog Fe-only 33.3 5E+02 0.011 25.9 11.3 26 107-135 388-413 (461)
456 PRK10117 trehalose-6-phosphate 33.2 1.3E+02 0.0027 30.1 6.5 98 310-422 348-452 (474)
457 PRK09219 xanthine phosphoribos 33.2 85 0.0018 26.9 4.8 29 107-135 50-80 (189)
458 PRK13195 pyrrolidone-carboxyla 33.2 89 0.0019 27.6 4.9 26 9-34 2-29 (222)
459 TIGR00696 wecB_tagA_cpsF bacte 33.1 1.7E+02 0.0038 24.7 6.6 84 25-133 37-130 (177)
460 COG0504 PyrG CTP synthase (UTP 33.1 81 0.0018 31.2 5.0 41 9-49 1-44 (533)
461 PRK04148 hypothetical protein; 33.1 68 0.0015 25.8 3.8 32 8-45 17-48 (134)
462 COG2084 MmsB 3-hydroxyisobutyr 33.0 50 0.0011 30.4 3.4 31 10-45 2-32 (286)
463 PRK06194 hypothetical protein; 32.8 72 0.0016 29.0 4.7 38 1-44 1-38 (287)
464 PLN00016 RNA-binding protein; 32.8 58 0.0013 31.3 4.2 35 9-45 53-89 (378)
465 PRK03094 hypothetical protein; 32.7 40 0.00087 24.3 2.2 20 25-44 10-29 (80)
466 PRK06505 enoyl-(acyl carrier p 32.5 85 0.0019 28.5 5.0 33 10-44 8-41 (271)
467 PRK05653 fabG 3-ketoacyl-(acyl 32.5 72 0.0016 28.0 4.5 20 26-45 19-38 (246)
468 COG2099 CobK Precorrin-6x redu 32.4 3.8E+02 0.0082 24.2 16.1 33 309-341 190-228 (257)
469 PF10933 DUF2827: Protein of u 32.4 2.3E+02 0.0049 27.0 7.6 90 297-401 253-349 (364)
470 TIGR02699 archaeo_AfpA archaeo 32.3 65 0.0014 27.3 3.8 27 19-45 9-37 (174)
471 PRK08690 enoyl-(acyl carrier p 32.3 73 0.0016 28.7 4.5 38 1-43 1-39 (261)
472 PRK09330 cell division protein 32.3 3.8E+02 0.0082 26.0 9.4 116 8-139 13-138 (384)
473 COG0240 GpsA Glycerol-3-phosph 32.3 55 0.0012 30.7 3.7 32 9-45 2-33 (329)
474 PRK12827 short chain dehydroge 32.3 80 0.0017 27.8 4.8 38 1-44 1-38 (249)
475 PRK02155 ppnK NAD(+)/NADH kina 32.3 65 0.0014 29.8 4.2 52 316-383 64-119 (291)
476 COG0062 Uncharacterized conser 32.3 70 0.0015 27.8 4.1 34 9-45 50-85 (203)
477 PRK13011 formyltetrahydrofolat 32.2 1.5E+02 0.0034 27.3 6.6 54 7-63 88-144 (286)
478 PLN02293 adenine phosphoribosy 32.0 1.5E+02 0.0032 25.4 6.1 28 107-134 62-91 (187)
479 PRK06904 replicative DNA helic 32.0 2.2E+02 0.0049 28.4 8.2 35 11-45 224-259 (472)
480 PRK06398 aldose dehydrogenase; 31.9 79 0.0017 28.3 4.7 38 1-44 1-38 (258)
481 CHL00194 ycf39 Ycf39; Provisio 31.9 57 0.0012 30.4 3.9 33 9-45 1-33 (317)
482 PRK00771 signal recognition pa 31.9 89 0.0019 30.8 5.2 38 8-45 95-132 (437)
483 PF06626 DUF1152: Protein of u 31.9 48 0.001 30.6 3.2 34 12-45 1-34 (297)
484 PRK14092 2-amino-4-hydroxy-6-h 31.8 1.2E+02 0.0025 25.4 5.2 32 235-266 5-36 (163)
485 PRK08303 short chain dehydroge 31.8 87 0.0019 29.1 5.1 32 10-44 9-40 (305)
486 PF14359 DUF4406: Domain of un 31.6 73 0.0016 23.7 3.6 28 13-40 2-33 (92)
487 PRK05294 carB carbamoyl phosph 31.5 4.1E+02 0.0089 29.8 10.9 38 8-45 7-50 (1066)
488 PRK07178 pyruvate carboxylase 31.4 3E+02 0.0064 27.5 9.0 33 10-47 4-36 (472)
489 PF06564 YhjQ: YhjQ protein; 31.3 81 0.0018 28.3 4.4 36 10-45 3-39 (243)
490 PF08357 SEFIR: SEFIR domain; 31.2 63 0.0014 26.2 3.6 31 11-41 4-35 (150)
491 PRK14852 hypothetical protein; 31.1 1.9E+02 0.0041 31.8 7.7 117 8-139 332-460 (989)
492 PF12695 Abhydrolase_5: Alpha/ 31.1 1.2E+02 0.0026 23.7 5.3 33 12-44 2-34 (145)
493 PF03701 UPF0181: Uncharacteri 30.9 1.5E+02 0.0031 19.2 4.2 29 390-422 14-42 (51)
494 PRK08226 short chain dehydroge 30.9 75 0.0016 28.4 4.4 39 1-45 1-39 (263)
495 PRK00133 metG methionyl-tRNA s 30.9 71 0.0015 33.6 4.7 28 18-45 18-48 (673)
496 TIGR00521 coaBC_dfp phosphopan 30.8 58 0.0013 31.6 3.7 37 9-46 4-40 (390)
497 COG0299 PurN Folate-dependent 30.7 2.3E+02 0.005 24.5 6.7 132 238-398 52-186 (200)
498 TIGR00639 PurN phosphoribosylg 30.7 3.5E+02 0.0075 23.2 8.6 52 9-63 1-57 (190)
499 PF00070 Pyr_redox: Pyridine n 30.6 80 0.0017 22.3 3.7 23 23-45 9-31 (80)
500 KOG1210 Predicted 3-ketosphing 30.6 83 0.0018 29.3 4.4 35 8-45 32-66 (331)
No 1
>PLN02410 UDP-glucoronosyl/UDP-glucosyl transferase family protein
Probab=100.00 E-value=2.8e-62 Score=473.48 Aligned_cols=414 Identities=51% Similarity=0.856 Sum_probs=330.1
Q ss_pred CceEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCCCCCCC-CCCCCCceEEeCCCCCCCCccccccHHHHHHHHHHh
Q 046167 8 RRRVVLVPSPHQGHINPMLQLGTILHSKGFSITVVHTQFNSPN-PSNHPEFEFQSIPDGLMDVNISARNLVDSILLLNEN 86 (424)
Q Consensus 8 ~~ril~~~~~~~GH~~p~~~la~~L~~~Gh~V~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (424)
+.||+++|++++||++|++.||+.|+.+|+.|||++++.+... .....++++..+|+++|.+.........++..+...
T Consensus 7 ~~HVvlvPfpaqGHi~P~l~LAk~La~~G~~VT~v~T~~n~~~~~~~~~~i~~~~ip~glp~~~~~~~~~~~~~~~~~~~ 86 (451)
T PLN02410 7 RRRVVLVPVPAQGHISPMMQLAKTLHLKGFSITIAQTKFNYFSPSDDFTDFQFVTIPESLPESDFKNLGPIEFLHKLNKE 86 (451)
T ss_pred CCEEEEECCCccccHHHHHHHHHHHHcCCCEEEEEeCcccccccccCCCCeEEEeCCCCCCcccccccCHHHHHHHHHHH
Confidence 5899999999999999999999999999999999999866422 111247999999988876432222334555556566
Q ss_pred chhHHHHHHHHHHhhcCCCCCceEEEecCccchHHHHHHHhCCceEEEecchHHHHHHHHhhhccc--------------
Q 046167 87 CREPFRNWLVQMIKEQQPGDEIVCIIYDEVMYFAEASASQLNVQSIILRTSGAVTVVARLVLFQLK-------------- 152 (424)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~pDlvi~d~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~-------------- 152 (424)
+...+++.++.+...... ++++||+|.+..|+..+|+++|||++.+++.+++....+.+++...
T Consensus 87 ~~~~~~~~L~~l~~~~~~--p~~cVI~D~f~~Wa~dvA~~lgIP~v~F~t~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (451)
T PLN02410 87 CQVSFKDCLGQLVLQQGN--EIACVVYDEFMYFAEAAAKEFKLPNVIFSTTSATAFVCRSVFDKLYANNVLAPLKEPKGQ 164 (451)
T ss_pred hHHHHHHHHHHHHhccCC--CcEEEEECCcchHHHHHHHHcCCCEEEEEccCHHHHHHHHHHHHHHhccCCCCccccccC
Confidence 777777777776432222 5799999999999999999999999999999888776554321110
Q ss_pred ----ccCCCCCChhH------------HHHHHHhhhccCCceEEecChhhhhHHHHHHHHhccCCCeeeecccccCCCCC
Q 046167 153 ----EEGYNPLKESY------------VQLINNAYSARTSSAVISNTIYCLEESVLSQLQQYFKVPNFPIGPLHKFAPSS 216 (424)
Q Consensus 153 ----~~~~~p~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vGp~~~~~~~~ 216 (424)
-+++.|.+... ...+........++++++|||+++|+.+++++...+++++++|||++.....
T Consensus 165 ~~~~iPg~~~~~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~l~~~~~~~v~~vGpl~~~~~~- 243 (451)
T PLN02410 165 QNELVPEFHPLRCKDFPVSHWASLESIMELYRNTVDKRTASSVIINTASCLESSSLSRLQQQLQIPVYPIGPLHLVASA- 243 (451)
T ss_pred ccccCCCCCCCChHHCcchhcCCcHHHHHHHHHHhhcccCCEEEEeChHHhhHHHHHHHHhccCCCEEEecccccccCC-
Confidence 01111111110 1112122224678899999999999999999987676789999999754221
Q ss_pred CCCCcccccccccccccCCCCeEEEEEeCCcccCCHHHHHHHHHHHHhCCCCeEEEEcCCCCCCCcccccCchhHHHHhc
Q 046167 217 NGSLLKEDTSCISWLNNQSPKSVIYVSLGSVASMDKKELEEMAWGLVNSKQPFLWVIRPRTNNAPEGIELLPKVLAEDVQ 296 (424)
Q Consensus 217 ~~~~~~~~~~l~~~l~~~~~~~~I~vs~Gs~~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~ 296 (424)
+...+..+.++.+||+.++++++|||||||....+.+++.+++.+|+.++++|||+++.+...+.+..+.+|++|.|+.+
T Consensus 244 ~~~~~~~~~~~~~wLd~~~~~sVvyvsfGS~~~~~~~q~~ela~gLe~s~~~FlWv~r~~~~~~~~~~~~lp~~f~er~~ 323 (451)
T PLN02410 244 PTSLLEENKSCIEWLNKQKKNSVIFVSLGSLALMEINEVMETASGLDSSNQQFLWVIRPGSVRGSEWIESLPKEFSKIIS 323 (451)
T ss_pred CccccccchHHHHHHHhCCCCcEEEEEccccccCCHHHHHHHHHHHHhcCCCeEEEEccCcccccchhhcCChhHHHhcc
Confidence 11122333457899999888999999999999999999999999999999999999985322121112348999999999
Q ss_pred CCCceeeecchhhhhccccccccccccchhhHHHhhhcCCceeecCcccchhhHHHHHHhhhhcceecCcccchHHHHHH
Q 046167 297 ENGYIVKWAPQKEVLSHVAVGGFWSHCGWNSTLESICEGVPMICMPFFEDQKVNARYLSHVWGVGLELEHELERGAVEKA 376 (424)
Q Consensus 297 ~nv~v~~~ip~~~ll~~~~~~~~i~hgG~~t~~eal~~GvP~v~~P~~~DQ~~na~~~~~~~G~g~~~~~~~~~~~L~~a 376 (424)
+|+++++|+||.+||+|+++++||||||+||++||+++|||||++|+++||+.||+++++.+|+|+.+...+++++|+++
T Consensus 324 ~~g~v~~w~PQ~~iL~h~~v~~fvtH~G~nS~~Ea~~~GvP~l~~P~~~DQ~~na~~~~~~~~~G~~~~~~~~~~~v~~a 403 (451)
T PLN02410 324 GRGYIVKWAPQKEVLSHPAVGGFWSHCGWNSTLESIGEGVPMICKPFSSDQKVNARYLECVWKIGIQVEGDLDRGAVERA 403 (451)
T ss_pred CCeEEEccCCHHHHhCCCccCeeeecCchhHHHHHHHcCCCEEeccccccCHHHHHHHHHHhCeeEEeCCcccHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999998746999999767899999999
Q ss_pred HHHHhcccchHHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHhcC
Q 046167 377 VRKLTVDKEGEFLRQRAAQLKEEVELSTRKGGFSYNSLNELLDLINKF 424 (424)
Q Consensus 377 i~~ll~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~a~~~~~~~~~~~ 424 (424)
|+++|.+++++.+|++|+++++++++++.+||++++.+++|++.+..+
T Consensus 404 v~~lm~~~~~~~~r~~a~~l~~~~~~a~~~gGsS~~~l~~fv~~~~~~ 451 (451)
T PLN02410 404 VKRLMVEEEGEEMRKRAISLKEQLRASVISGGSSHNSLEEFVHFMRTL 451 (451)
T ss_pred HHHHHcCCcHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhC
Confidence 999998866678999999999999999999999999999999998764
No 2
>PLN02555 limonoid glucosyltransferase
Probab=100.00 E-value=6.8e-59 Score=451.44 Aligned_cols=411 Identities=29% Similarity=0.522 Sum_probs=323.5
Q ss_pred CceEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCCCCCCCCC----------C---CCCceEEeCCCCCCCCccccc
Q 046167 8 RRRVVLVPSPHQGHINPMLQLGTILHSKGFSITVVHTQFNSPNPS----------N---HPEFEFQSIPDGLMDVNISAR 74 (424)
Q Consensus 8 ~~ril~~~~~~~GH~~p~~~la~~L~~~Gh~V~~~~~~~~~~~~~----------~---~~g~~~~~~~~~~~~~~~~~~ 74 (424)
+.||+++|+|+.||++|++.||+.|+.+|..||+++++++..... . ...++|..+|++++.+.....
T Consensus 7 ~~HVv~~PfpaqGHi~Pml~lA~~La~~G~~vT~v~T~~~~~~~~~a~~~~~~~~~~~~~~~i~~~~~pdglp~~~~~~~ 86 (480)
T PLN02555 7 LVHVMLVSFPGQGHVNPLLRLGKLLASKGLLVTFVTTESWGKKMRQANKIQDGVLKPVGDGFIRFEFFEDGWAEDDPRRQ 86 (480)
T ss_pred CCEEEEECCcccccHHHHHHHHHHHHhCCCeEEEEeccchhhhhhccccccccccccCCCCeEEEeeCCCCCCCCccccc
Confidence 689999999999999999999999999999999999985443211 0 112677777878876533223
Q ss_pred cHHHHHHHHHHhchhHHHHHHHHHHhhcCCCCCceEEEecCccchHHHHHHHhCCceEEEecchHHHHHHHHhhhcc---
Q 046167 75 NLVDSILLLNENCREPFRNWLVQMIKEQQPGDEIVCIIYDEVMYFAEASASQLNVQSIILRTSGAVTVVARLVLFQL--- 151 (424)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pDlvi~d~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~--- 151 (424)
++..++..+...+...++++++++.... . .+++||+|.+..|+..+|+++|||.+.+++++++....+.+++..
T Consensus 87 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~-~--pv~ciV~D~~~~wa~~vA~~~gIP~~~F~t~~a~~~~~~~~~~~~~~~ 163 (480)
T PLN02555 87 DLDLYLPQLELVGKREIPNLVKRYAEQG-R--PVSCLINNPFIPWVCDVAEELGIPSAVLWVQSCACFSAYYHYYHGLVP 163 (480)
T ss_pred CHHHHHHHHHHhhhHHHHHHHHHHhccC-C--CceEEEECCcchHHHHHHHHcCCCeEEeecccHHHHHHHHHHhhcCCC
Confidence 4444555555566777888777664221 1 349999999999999999999999999999998887766543210
Q ss_pred -c----------ccCCCCCCh--------------hHHHHHHH-hhhccCCceEEecChhhhhHHHHHHHHhccCCCeee
Q 046167 152 -K----------EEGYNPLKE--------------SYVQLINN-AYSARTSSAVISNTIYCLEESVLSQLQQYFKVPNFP 205 (424)
Q Consensus 152 -~----------~~~~~p~~~--------------~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 205 (424)
. -+++.+.+. ..++.+.+ ......++++++|||++||..+++.+.... +++.
T Consensus 164 ~~~~~~~~~~~~iPglp~l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~a~~vlvNTf~eLE~~~~~~l~~~~--~v~~ 241 (480)
T PLN02555 164 FPTETEPEIDVQLPCMPLLKYDEIPSFLHPSSPYPFLRRAILGQYKNLDKPFCILIDTFQELEKEIIDYMSKLC--PIKP 241 (480)
T ss_pred cccccCCCceeecCCCCCcCHhhCcccccCCCCchHHHHHHHHHHHhcccCCEEEEEchHHHhHHHHHHHhhCC--CEEE
Confidence 0 011111110 01222334 455677889999999999999998886633 4999
Q ss_pred ecccccCCCC--C--CCCCcccccccccccccCCCCeEEEEEeCCcccCCHHHHHHHHHHHHhCCCCeEEEEcCCCCCCC
Q 046167 206 IGPLHKFAPS--S--NGSLLKEDTSCISWLNNQSPKSVIYVSLGSVASMDKKELEEMAWGLVNSKQPFLWVIRPRTNNAP 281 (424)
Q Consensus 206 vGp~~~~~~~--~--~~~~~~~~~~l~~~l~~~~~~~~I~vs~Gs~~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~~~~~ 281 (424)
|||++..... . ....+..++++.+||+.++++++|||||||+...+.+++..++.+++.++++|||+++.....+.
T Consensus 242 iGPl~~~~~~~~~~~~~~~~~~~~~~~~wLd~~~~~sVvyvsfGS~~~~~~~q~~ela~~l~~~~~~flW~~~~~~~~~~ 321 (480)
T PLN02555 242 VGPLFKMAKTPNSDVKGDISKPADDCIEWLDSKPPSSVVYISFGTVVYLKQEQIDEIAYGVLNSGVSFLWVMRPPHKDSG 321 (480)
T ss_pred eCcccCccccccccccccccccchhHHHHHhCCCCCceeEEEeccccCCCHHHHHHHHHHHHhcCCeEEEEEecCccccc
Confidence 9999753211 0 11123345569999998888889999999999889999999999999999999999974321110
Q ss_pred cccccCchhHHHHhcCCCceeeecchhhhhccccccccccccchhhHHHhhhcCCceeecCcccchhhHHHHHHhhhhcc
Q 046167 282 EGIELLPKVLAEDVQENGYIVKWAPQKEVLSHVAVGGFWSHCGWNSTLESICEGVPMICMPFFEDQKVNARYLSHVWGVG 361 (424)
Q Consensus 282 ~~~~~l~~~~~~~~~~nv~v~~~ip~~~ll~~~~~~~~i~hgG~~t~~eal~~GvP~v~~P~~~DQ~~na~~~~~~~G~g 361 (424)
.....+|+++.++.++|+++++|+||.+||.|+++++||||||+||++||+++|||||++|+++||+.||+++++.+|+|
T Consensus 322 ~~~~~lp~~~~~~~~~~g~v~~W~PQ~~iL~H~~v~~FvtH~G~nS~~Eai~~GVP~l~~P~~~DQ~~Na~~~~~~~gvG 401 (480)
T PLN02555 322 VEPHVLPEEFLEKAGDKGKIVQWCPQEKVLAHPSVACFVTHCGWNSTMEALSSGVPVVCFPQWGDQVTDAVYLVDVFKTG 401 (480)
T ss_pred chhhcCChhhhhhcCCceEEEecCCHHHHhCCCccCeEEecCCcchHHHHHHcCCCEEeCCCccccHHHHHHHHHHhCce
Confidence 01135888898888899999999999999999999999999999999999999999999999999999999998857999
Q ss_pred eecC-----c-ccchHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHhc
Q 046167 362 LELE-----H-ELERGAVEKAVRKLTVDKEGEFLRQRAAQLKEEVELSTRKGGFSYNSLNELLDLINK 423 (424)
Q Consensus 362 ~~~~-----~-~~~~~~L~~ai~~ll~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~a~~~~~~~~~~ 423 (424)
+.+. . .++.++|.++|+++|.+++++.+|+||++++++.++++.+||++++.+++|++.+.+
T Consensus 402 v~l~~~~~~~~~v~~~~v~~~v~~vm~~~~g~~~r~ra~~l~~~a~~A~~egGSS~~~l~~~v~~i~~ 469 (480)
T PLN02555 402 VRLCRGEAENKLITREEVAECLLEATVGEKAAELKQNALKWKEEAEAAVAEGGSSDRNFQEFVDKLVR 469 (480)
T ss_pred EEccCCccccCcCcHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHh
Confidence 9993 3 579999999999999876678999999999999999999999999999999999864
No 3
>PLN02173 UDP-glucosyl transferase family protein
Probab=100.00 E-value=8.1e-59 Score=447.31 Aligned_cols=405 Identities=27% Similarity=0.475 Sum_probs=321.4
Q ss_pred cCCCCceEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCCCCCCCC--CCCCCceEEeCCCCCCCCc-cccccHHHHH
Q 046167 4 QGQRRRRVVLVPSPHQGHINPMLQLGTILHSKGFSITVVHTQFNSPNP--SNHPEFEFQSIPDGLMDVN-ISARNLVDSI 80 (424)
Q Consensus 4 m~~~~~ril~~~~~~~GH~~p~~~la~~L~~~Gh~V~~~~~~~~~~~~--~~~~g~~~~~~~~~~~~~~-~~~~~~~~~~ 80 (424)
|+.++.||+++|++++||++|++.||+.|+.+|+.|||++++.+.... ....+++++.+|++++.+. ....++..++
T Consensus 1 ~~~~~~hvv~~P~paqGHi~P~l~lAk~La~~G~~vT~v~t~~~~~~~~~~~~~~i~~~~ipdglp~~~~~~~~~~~~~~ 80 (449)
T PLN02173 1 MEKMRGHVLAVPFPSQGHITPIRQFCKRLHSKGFKTTHTLTTFIFNTIHLDPSSPISIATISDGYDQGGFSSAGSVPEYL 80 (449)
T ss_pred CCCCCcEEEEecCcccccHHHHHHHHHHHHcCCCEEEEEECCchhhhcccCCCCCEEEEEcCCCCCCcccccccCHHHHH
Confidence 444567999999999999999999999999999999999998554331 1224699999999888632 2233455666
Q ss_pred HHHHHhchhHHHHHHHHHHhhcCCCCCc-eEEEecCccchHHHHHHHhCCceEEEecchHHHHHHHHhhhc------ccc
Q 046167 81 LLLNENCREPFRNWLVQMIKEQQPGDEI-VCIIYDEVMYFAEASASQLNVQSIILRTSGAVTVVARLVLFQ------LKE 153 (424)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p-Dlvi~d~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~------~~~ 153 (424)
..+...+...++++++++.... +| ++||+|.+..|+..+|+++|||.+.+++++.+....++..-. ..-
T Consensus 81 ~~~~~~~~~~~~~~l~~~~~~~----~Pv~cvV~D~f~~Wa~dVA~elgIP~v~F~~~~a~~~~~~~~~~~~~~~~~~~~ 156 (449)
T PLN02173 81 QNFKTFGSKTVADIIRKHQSTD----NPITCIVYDSFMPWALDLAREFGLAAAPFFTQSCAVNYINYLSYINNGSLTLPI 156 (449)
T ss_pred HHHHHhhhHHHHHHHHHhhccC----CCceEEEECCcchhHHHHHHHhCCCEEEEechHHHHHHHHHhHHhccCCccCCC
Confidence 6666677888888887764321 45 999999999999999999999999999987776554432100 001
Q ss_pred cCCCCCC-------------h-hHHHHHHH-hhhccCCceEEecChhhhhHHHHHHHHhccCCCeeeecccccCCC----
Q 046167 154 EGYNPLK-------------E-SYVQLINN-AYSARTSSAVISNTIYCLEESVLSQLQQYFKVPNFPIGPLHKFAP---- 214 (424)
Q Consensus 154 ~~~~p~~-------------~-~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vGp~~~~~~---- 214 (424)
+++.+.+ . .....+.+ ......++++++|||+++|+.+++.+... .+++.|||++....
T Consensus 157 pg~p~l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~~~~~--~~v~~VGPl~~~~~~~~~ 234 (449)
T PLN02173 157 KDLPLLELQDLPTFVTPTGSHLAYFEMVLQQFTNFDKADFVLVNSFHDLDLHENELLSKV--CPVLTIGPTVPSMYLDQQ 234 (449)
T ss_pred CCCCCCChhhCChhhcCCCCchHHHHHHHHHHhhhccCCEEEEeCHHHhhHHHHHHHHhc--CCeeEEcccCchhhcccc
Confidence 1111110 0 11333434 55567789999999999999999888653 47999999974210
Q ss_pred --C-CC--CCCc--ccccccccccccCCCCeEEEEEeCCcccCCHHHHHHHHHHHHhCCCCeEEEEcCCCCCCCcccccC
Q 046167 215 --S-SN--GSLL--KEDTSCISWLNNQSPKSVIYVSLGSVASMDKKELEEMAWGLVNSKQPFLWVIRPRTNNAPEGIELL 287 (424)
Q Consensus 215 --~-~~--~~~~--~~~~~l~~~l~~~~~~~~I~vs~Gs~~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~l 287 (424)
. .. .+.+ +.++++.+||+.++++++|||||||....+.+++.+++.++ .+.+++|+++.+. .+.+
T Consensus 235 ~~~~~~~~~~~~~~~~~~~c~~WLd~~~~~svvyvsfGS~~~~~~~~~~ela~gL--s~~~flWvvr~~~------~~~l 306 (449)
T PLN02173 235 IKSDNDYDLNLFDLKEAALCTDWLDKRPQGSVVYIAFGSMAKLSSEQMEEIASAI--SNFSYLWVVRASE------ESKL 306 (449)
T ss_pred ccccccccccccccccchHHHHHHhcCCCCceEEEEecccccCCHHHHHHHHHHh--cCCCEEEEEeccc------hhcc
Confidence 0 00 0112 23445889999888899999999999988999999999999 6778999997531 1347
Q ss_pred chhHHHHh-cCCCceeeecchhhhhccccccccccccchhhHHHhhhcCCceeecCcccchhhHHHHHHhhhhcceecCc
Q 046167 288 PKVLAEDV-QENGYIVKWAPQKEVLSHVAVGGFWSHCGWNSTLESICEGVPMICMPFFEDQKVNARYLSHVWGVGLELEH 366 (424)
Q Consensus 288 ~~~~~~~~-~~nv~v~~~ip~~~ll~~~~~~~~i~hgG~~t~~eal~~GvP~v~~P~~~DQ~~na~~~~~~~G~g~~~~~ 366 (424)
|+++.++. ++|+++++|+||.+||+|+++++||||||+||++||+++|||||++|.++||+.||+++++.+|+|+.+..
T Consensus 307 p~~~~~~~~~~~~~i~~W~PQ~~iL~H~~v~~FvtHcGwnS~~Eai~~GVP~l~~P~~~DQ~~Na~~v~~~~g~Gv~v~~ 386 (449)
T PLN02173 307 PPGFLETVDKDKSLVLKWSPQLQVLSNKAIGCFMTHCGWNSTMEGLSLGVPMVAMPQWTDQPMNAKYIQDVWKVGVRVKA 386 (449)
T ss_pred cchHHHhhcCCceEEeCCCCHHHHhCCCccceEEecCccchHHHHHHcCCCEEecCchhcchHHHHHHHHHhCceEEEee
Confidence 88888877 58899999999999999999999999999999999999999999999999999999999975699988853
Q ss_pred -----ccchHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHh
Q 046167 367 -----ELERGAVEKAVRKLTVDKEGEFLRQRAAQLKEEVELSTRKGGFSYNSLNELLDLIN 422 (424)
Q Consensus 367 -----~~~~~~L~~ai~~ll~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~a~~~~~~~~~ 422 (424)
.++.++|.++|+++|.+++++.+|++|++++++.++++.+||++++.++++++.+.
T Consensus 387 ~~~~~~~~~e~v~~av~~vm~~~~~~~~r~~a~~~~~~a~~Av~~gGSS~~~l~~~v~~~~ 447 (449)
T PLN02173 387 EKESGIAKREEIEFSIKEVMEGEKSKEMKENAGKWRDLAVKSLSEGGSTDININTFVSKIQ 447 (449)
T ss_pred cccCCcccHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHhc
Confidence 25899999999999988767899999999999999999999999999999999875
No 4
>PLN02562 UDP-glycosyltransferase
Probab=100.00 E-value=3.3e-58 Score=446.50 Aligned_cols=401 Identities=29% Similarity=0.457 Sum_probs=314.3
Q ss_pred cCCCCceEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCCCCCCCCC----CCCCceEEeCCCCCCCCccccccHHHH
Q 046167 4 QGQRRRRVVLVPSPHQGHINPMLQLGTILHSKGFSITVVHTQFNSPNPS----NHPEFEFQSIPDGLMDVNISARNLVDS 79 (424)
Q Consensus 4 m~~~~~ril~~~~~~~GH~~p~~~la~~L~~~Gh~V~~~~~~~~~~~~~----~~~g~~~~~~~~~~~~~~~~~~~~~~~ 79 (424)
|..+ .||+++|+++.||++|++.||+.|+.+|++||+++++.+..... ..++++++.+|++++.+. ..++...
T Consensus 3 ~~~~-~HVVlvPfPaqGHi~PmL~LAk~Las~G~~VT~vtt~~~~~~~~~~~~~~~~i~~v~lp~g~~~~~--~~~~~~l 79 (448)
T PLN02562 3 VTQR-PKIILVPYPAQGHVTPMLKLASAFLSRGFEPVVITPEFIHRRISATLDPKLGITFMSISDGQDDDP--PRDFFSI 79 (448)
T ss_pred CCCC-cEEEEEcCccccCHHHHHHHHHHHHhCCCEEEEEeCcchhhhhhhccCCCCCEEEEECCCCCCCCc--cccHHHH
Confidence 5554 69999999999999999999999999999999999986543211 123799999998775321 1223333
Q ss_pred HHHHHHhchhHHHHHHHHHHhhcCCCCCceEEEecCccchHHHHHHHhCCceEEEecchHHHHHHHHhhhccc-------
Q 046167 80 ILLLNENCREPFRNWLVQMIKEQQPGDEIVCIIYDEVMYFAEASASQLNVQSIILRTSGAVTVVARLVLFQLK------- 152 (424)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~pDlvi~d~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~------- 152 (424)
...+...+...++++++++... . ++++||+|.+..|+..+|+++|||++.+++++...+..+.+.+...
T Consensus 80 ~~a~~~~~~~~l~~ll~~l~~~--~--pv~cvI~D~~~~w~~~vA~~~giP~~~f~~~~a~~~~~~~~~~~~~~~~~~~~ 155 (448)
T PLN02562 80 ENSMENTMPPQLERLLHKLDED--G--EVACMVVDLLASWAIGVADRCGVPVAGFWPVMLAAYRLIQAIPELVRTGLISE 155 (448)
T ss_pred HHHHHHhchHHHHHHHHHhcCC--C--CcEEEEECCccHhHHHHHHHhCCCEEEEechhHHHHHHHHHHHHHhhcccccc
Confidence 4444445677777777776422 1 3589999999999999999999999999998887666543322100
Q ss_pred ------------ccCCCCCChh--------------HHHHHHH-hhhccCCceEEecChhhhhHHHHHHHHhc----cCC
Q 046167 153 ------------EEGYNPLKES--------------YVQLINN-AYSARTSSAVISNTIYCLEESVLSQLQQY----FKV 201 (424)
Q Consensus 153 ------------~~~~~p~~~~--------------~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~----~~~ 201 (424)
.++..+.+.. ....+.+ .+....++++++|||.++|+..++.+... ..+
T Consensus 156 ~~~~~~~~~~~~~Pg~~~l~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~~~~~~~~~~~~ 235 (448)
T PLN02562 156 TGCPRQLEKICVLPEQPLLSTEDLPWLIGTPKARKARFKFWTRTLERTKSLRWILMNSFKDEEYDDVKNHQASYNNGQNP 235 (448)
T ss_pred ccccccccccccCCCCCCCChhhCcchhcCCCcchHHHHHHHHHHhccccCCEEEEcChhhhCHHHHHHHHhhhccccCC
Confidence 0111111100 1333444 55566788999999999999888866532 336
Q ss_pred CeeeecccccCCCCC--CCCCcccccccccccccCCCCeEEEEEeCCcc-cCCHHHHHHHHHHHHhCCCCeEEEEcCCCC
Q 046167 202 PNFPIGPLHKFAPSS--NGSLLKEDTSCISWLNNQSPKSVIYVSLGSVA-SMDKKELEEMAWGLVNSKQPFLWVIRPRTN 278 (424)
Q Consensus 202 ~~~~vGp~~~~~~~~--~~~~~~~~~~l~~~l~~~~~~~~I~vs~Gs~~-~~~~~~~~~~~~a~~~~~~~~i~~~~~~~~ 278 (424)
+++.|||++...... ....++.+.++.+||+.++++++|||||||.. ..+.++++.++.+++++++++||+++.+.
T Consensus 236 ~v~~iGpl~~~~~~~~~~~~~~~~~~~c~~wLd~~~~~svvyvsfGS~~~~~~~~~~~~l~~~l~~~g~~fiW~~~~~~- 314 (448)
T PLN02562 236 QILQIGPLHNQEATTITKPSFWEEDMSCLGWLQEQKPNSVIYISFGSWVSPIGESNVRTLALALEASGRPFIWVLNPVW- 314 (448)
T ss_pred CEEEecCcccccccccCCCccccchHHHHHHHhcCCCCceEEEEecccccCCCHHHHHHHHHHHHHCCCCEEEEEcCCc-
Confidence 799999998643210 11123445557799998888899999999986 47899999999999999999999996532
Q ss_pred CCCcccccCchhHHHHhcCCCceeeecchhhhhccccccccccccchhhHHHhhhcCCceeecCcccchhhHHHHHHhhh
Q 046167 279 NAPEGIELLPKVLAEDVQENGYIVKWAPQKEVLSHVAVGGFWSHCGWNSTLESICEGVPMICMPFFEDQKVNARYLSHVW 358 (424)
Q Consensus 279 ~~~~~~~~l~~~~~~~~~~nv~v~~~ip~~~ll~~~~~~~~i~hgG~~t~~eal~~GvP~v~~P~~~DQ~~na~~~~~~~ 358 (424)
.+.+|+++.++.++|+++++|+||.+||+|+++++||||||+||++||+++|||+|++|+++||+.||+++++.+
T Consensus 315 -----~~~l~~~~~~~~~~~~~v~~w~PQ~~iL~h~~v~~fvtH~G~nS~~Eal~~GvP~l~~P~~~DQ~~na~~~~~~~ 389 (448)
T PLN02562 315 -----REGLPPGYVERVSKQGKVVSWAPQLEVLKHQAVGCYLTHCGWNSTMEAIQCQKRLLCYPVAGDQFVNCAYIVDVW 389 (448)
T ss_pred -----hhhCCHHHHHHhccCEEEEecCCHHHHhCCCccceEEecCcchhHHHHHHcCCCEEeCCcccchHHHHHHHHHHh
Confidence 124888998899999999999999999999999999999999999999999999999999999999999998646
Q ss_pred hcceecCcccchHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHh
Q 046167 359 GVGLELEHELERGAVEKAVRKLTVDKEGEFLRQRAAQLKEEVELSTRKGGFSYNSLNELLDLIN 422 (424)
Q Consensus 359 G~g~~~~~~~~~~~L~~ai~~ll~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~a~~~~~~~~~ 422 (424)
|+|+.+.. ++.++|.++|+++|.| ++||+||++++++++++ .+||++++.+++|++.+.
T Consensus 390 g~g~~~~~-~~~~~l~~~v~~~l~~---~~~r~~a~~l~~~~~~~-~~gGSS~~nl~~~v~~~~ 448 (448)
T PLN02562 390 KIGVRISG-FGQKEVEEGLRKVMED---SGMGERLMKLRERAMGE-EARLRSMMNFTTLKDELK 448 (448)
T ss_pred CceeEeCC-CCHHHHHHHHHHHhCC---HHHHHHHHHHHHHHHhc-CCCCCHHHHHHHHHHHhC
Confidence 99988865 8999999999999998 79999999999999877 667999999999999863
No 5
>PLN02210 UDP-glucosyl transferase
Probab=100.00 E-value=5e-58 Score=445.65 Aligned_cols=404 Identities=30% Similarity=0.491 Sum_probs=314.4
Q ss_pred CcccCCCCceEEEEcCCCccChHHHHHHHHH--HHhCCCeEEEEeCCCCCCCCC----CCCCceEEeCCCCCCCCccccc
Q 046167 1 MEEQGQRRRRVVLVPSPHQGHINPMLQLGTI--LHSKGFSITVVHTQFNSPNPS----NHPEFEFQSIPDGLMDVNISAR 74 (424)
Q Consensus 1 ~~~m~~~~~ril~~~~~~~GH~~p~~~la~~--L~~~Gh~V~~~~~~~~~~~~~----~~~g~~~~~~~~~~~~~~~~~~ 74 (424)
|+.+..++.||+++|++++||++|++.||+. |..+|++|||++++.+..... ....+++..++++++.+.. .
T Consensus 1 ~~~~~~~~~hvv~~P~pa~GHi~P~l~La~~L~L~~~G~~VT~v~t~~~~~~~~~~~~~~~~~~~~~~~~glp~~~~--~ 78 (456)
T PLN02210 1 MGSSEGQETHVLMVTLAFQGHINPMLKLAKHLSLSSKNLHFTLATTEQARDLLSTVEKPRRPVDLVFFSDGLPKDDP--R 78 (456)
T ss_pred CCCcCCCCCEEEEeCCcccccHHHHHHHHHHHHhhcCCcEEEEEeccchhhhhccccCCCCceEEEECCCCCCCCcc--c
Confidence 6566555789999999999999999999999 569999999999986543311 1246888888878776532 2
Q ss_pred cHHHHHHHHHHhchhHHHHHHHHHHhhcCCCCCceEEEecCccchHHHHHHHhCCceEEEecchHHHHHHHHhhhc----
Q 046167 75 NLVDSILLLNENCREPFRNWLVQMIKEQQPGDEIVCIIYDEVMYFAEASASQLNVQSIILRTSGAVTVVARLVLFQ---- 150 (424)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pDlvi~d~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~---- 150 (424)
+...++..+.+.+...+.++++.. +||+||+|.+..|+..+|+++|||.+.+++.++..+..+.+...
T Consensus 79 ~~~~~~~~~~~~~~~~l~~~l~~~--------~~~~vI~D~~~~w~~~vA~~lgIP~~~f~~~sa~~~~~~~~~~~~~~~ 150 (456)
T PLN02210 79 APETLLKSLNKVGAKNLSKIIEEK--------RYSCIISSPFTPWVPAVAAAHNIPCAILWIQACGAYSVYYRYYMKTNS 150 (456)
T ss_pred CHHHHHHHHHHhhhHHHHHHHhcC--------CCcEEEECCcchhHHHHHHHhCCCEEEEecccHHHHHHHHhhhhccCC
Confidence 344455555545555555555443 79999999999999999999999999998888777665543211
Q ss_pred ---c-------cccCCCCCChhH------------HHHHH-H-hhhccCCceEEecChhhhhHHHHHHHHhccCCCeeee
Q 046167 151 ---L-------KEEGYNPLKESY------------VQLIN-N-AYSARTSSAVISNTIYCLEESVLSQLQQYFKVPNFPI 206 (424)
Q Consensus 151 ---~-------~~~~~~p~~~~~------------~~~~~-~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v 206 (424)
. .-+++.+..... +..+. + ......++++++|+|.++|..+++.+.+ . .++++|
T Consensus 151 ~~~~~~~~~~~~~Pgl~~~~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~l~~-~-~~v~~V 228 (456)
T PLN02210 151 FPDLEDLNQTVELPALPLLEVRDLPSFMLPSGGAHFNNLMAEFADCLRYVKWVLVNSFYELESEIIESMAD-L-KPVIPI 228 (456)
T ss_pred CCcccccCCeeeCCCCCCCChhhCChhhhcCCchHHHHHHHHHHHhcccCCEEEEeCHHHHhHHHHHHHhh-c-CCEEEE
Confidence 0 011111111100 11222 2 2344567899999999999999998876 3 579999
Q ss_pred cccccCC--CCCC--------CCCcccccccccccccCCCCeEEEEEeCCcccCCHHHHHHHHHHHHhCCCCeEEEEcCC
Q 046167 207 GPLHKFA--PSSN--------GSLLKEDTSCISWLNNQSPKSVIYVSLGSVASMDKKELEEMAWGLVNSKQPFLWVIRPR 276 (424)
Q Consensus 207 Gp~~~~~--~~~~--------~~~~~~~~~l~~~l~~~~~~~~I~vs~Gs~~~~~~~~~~~~~~a~~~~~~~~i~~~~~~ 276 (424)
||++... +... ...+..++++.+|++.++++++|||||||....+.+++..++.+++.++++|||+++..
T Consensus 229 GPl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wld~~~~~svvyvsfGS~~~~~~~~~~e~a~~l~~~~~~flw~~~~~ 308 (456)
T PLN02210 229 GPLVSPFLLGDDEEETLDGKNLDMCKSDDCCMEWLDKQARSSVVYISFGSMLESLENQVETIAKALKNRGVPFLWVIRPK 308 (456)
T ss_pred cccCchhhcCcccccccccccccccccchHHHHHHhCCCCCceEEEEecccccCCHHHHHHHHHHHHhCCCCEEEEEeCC
Confidence 9997421 0000 01234455688999988888999999999988899999999999999999999999743
Q ss_pred CCCCCcccccCchhHHHHh-cCCCceeeecchhhhhccccccccccccchhhHHHhhhcCCceeecCcccchhhHHHHHH
Q 046167 277 TNNAPEGIELLPKVLAEDV-QENGYIVKWAPQKEVLSHVAVGGFWSHCGWNSTLESICEGVPMICMPFFEDQKVNARYLS 355 (424)
Q Consensus 277 ~~~~~~~~~~l~~~~~~~~-~~nv~v~~~ip~~~ll~~~~~~~~i~hgG~~t~~eal~~GvP~v~~P~~~DQ~~na~~~~ 355 (424)
.. ...++.+.++. ++|+.+++|+||.+||+|+++++||||||+||++|++++|||+|++|+++||+.||++++
T Consensus 309 ~~------~~~~~~~~~~~~~~~g~v~~w~PQ~~iL~h~~vg~FitH~G~nS~~Eai~~GVP~v~~P~~~DQ~~na~~~~ 382 (456)
T PLN02210 309 EK------AQNVQVLQEMVKEGQGVVLEWSPQEKILSHMAISCFVTHCGWNSTIETVVAGVPVVAYPSWTDQPIDARLLV 382 (456)
T ss_pred cc------ccchhhHHhhccCCCeEEEecCCHHHHhcCcCcCeEEeeCCcccHHHHHHcCCCEEecccccccHHHHHHHH
Confidence 11 12334555555 478888899999999999999999999999999999999999999999999999999998
Q ss_pred hhhhcceecCc-----ccchHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHh
Q 046167 356 HVWGVGLELEH-----ELERGAVEKAVRKLTVDKEGEFLRQRAAQLKEEVELSTRKGGFSYNSLNELLDLIN 422 (424)
Q Consensus 356 ~~~G~g~~~~~-----~~~~~~L~~ai~~ll~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~a~~~~~~~~~ 422 (424)
+.+|+|+.+.. .+++++|+++|+++|.+++++.+|+||+++++..++++++||++++.+++|++.+.
T Consensus 383 ~~~g~G~~l~~~~~~~~~~~~~l~~av~~~m~~~~g~~~r~~a~~l~~~a~~Av~~gGSS~~~l~~~v~~~~ 454 (456)
T PLN02210 383 DVFGIGVRMRNDAVDGELKVEEVERCIEAVTEGPAAADIRRRAAELKHVARLALAPGGSSARNLDLFISDIT 454 (456)
T ss_pred HHhCeEEEEeccccCCcCCHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHh
Confidence 64699999852 48999999999999988656789999999999999999999999999999999875
No 6
>PLN02670 transferase, transferring glycosyl groups
Probab=100.00 E-value=5.1e-58 Score=443.81 Aligned_cols=404 Identities=27% Similarity=0.422 Sum_probs=315.1
Q ss_pred CceEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCCCCCCCCC-----CCCCceEEeCC----CCCCCCccccccHH-
Q 046167 8 RRRVVLVPSPHQGHINPMLQLGTILHSKGFSITVVHTQFNSPNPS-----NHPEFEFQSIP----DGLMDVNISARNLV- 77 (424)
Q Consensus 8 ~~ril~~~~~~~GH~~p~~~la~~L~~~Gh~V~~~~~~~~~~~~~-----~~~g~~~~~~~----~~~~~~~~~~~~~~- 77 (424)
+.||+++|++++||++|++.||+.|+.+|..|||++++.+..... ...+++++.+| ++++.+.....+..
T Consensus 6 ~~HVvl~P~paqGHi~P~l~LAk~La~~G~~vT~v~t~~n~~~~~~~~~~~~~~i~~~~lp~p~~dglp~~~~~~~~~~~ 85 (472)
T PLN02670 6 VLHVAMFPWLAMGHLIPFLRLSKLLAQKGHKISFISTPRNLHRLPKIPSQLSSSITLVSFPLPSVPGLPSSAESSTDVPY 85 (472)
T ss_pred CcEEEEeCChhhhHHHHHHHHHHHHHhCCCEEEEEeCCchHHhhhhccccCCCCeeEEECCCCccCCCCCCcccccccch
Confidence 369999999999999999999999999999999999986653211 11368999988 66765432222221
Q ss_pred ---HHHHHHHHhchhHHHHHHHHHHhhcCCCCCceEEEecCccchHHHHHHHhCCceEEEecchHHHHHHHHhhhcc---
Q 046167 78 ---DSILLLNENCREPFRNWLVQMIKEQQPGDEIVCIIYDEVMYFAEASASQLNVQSIILRTSGAVTVVARLVLFQL--- 151 (424)
Q Consensus 78 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pDlvi~d~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~--- 151 (424)
..+....+.+...++++++.+ ++++||+|.+..|+..+|+++|||++.+++.+....+.+.+....
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~l~~~--------~~~cvI~D~f~~wa~~vA~~~gIP~~~f~~~~a~~~~~~~~~~~~~~~ 157 (472)
T PLN02670 86 TKQQLLKKAFDLLEPPLTTFLETS--------KPDWIIYDYASHWLPSIAAELGISKAFFSLFTAATLSFIGPPSSLMEG 157 (472)
T ss_pred hhHHHHHHHHHHhHHHHHHHHHhC--------CCcEEEECCcchhHHHHHHHcCCCEEEEehhhHHHHHHHhhhHhhhhc
Confidence 233344455666666666654 799999999999999999999999999999888776665322100
Q ss_pred ------c-----ccCCCCCCh------hH--------------HHHHHH-hhhccCCceEEecChhhhhHHHHHHHHhcc
Q 046167 152 ------K-----EEGYNPLKE------SY--------------VQLINN-AYSARTSSAVISNTIYCLEESVLSQLQQYF 199 (424)
Q Consensus 152 ------~-----~~~~~p~~~------~~--------------~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 199 (424)
. .+++.|... .. ...+.+ .....+++++++|||+++|+.+++.+...+
T Consensus 158 ~~~~~~~~~~~~~p~~~P~~~~~~~~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~~gvlvNTf~eLE~~~l~~l~~~~ 237 (472)
T PLN02670 158 GDLRSTAEDFTVVPPWVPFESNIVFRYHEVTKYVEKTEEDETGPSDSVRFGFAIGGSDVVIIRSSPEFEPEWFDLLSDLY 237 (472)
T ss_pred ccCCCccccccCCCCcCCCCccccccHHHhhHHHhccCccchHHHHHHHHHhhcccCCEEEEeCHHHHhHHHHHHHHHhh
Confidence 0 111222110 01 112222 334566889999999999999999998766
Q ss_pred CCCeeeecccccCCCCCCCCC-c--ccccccccccccCCCCeEEEEEeCCcccCCHHHHHHHHHHHHhCCCCeEEEEcCC
Q 046167 200 KVPNFPIGPLHKFAPSSNGSL-L--KEDTSCISWLNNQSPKSVIYVSLGSVASMDKKELEEMAWGLVNSKQPFLWVIRPR 276 (424)
Q Consensus 200 ~~~~~~vGp~~~~~~~~~~~~-~--~~~~~l~~~l~~~~~~~~I~vs~Gs~~~~~~~~~~~~~~a~~~~~~~~i~~~~~~ 276 (424)
++++++|||+........... . ..+.++.+||+.++++++|||||||....+.+++.+++.+|+.++++|||+++..
T Consensus 238 ~~~v~~VGPl~~~~~~~~~~~~~~~~~~~~~~~wLd~~~~~sVvyvsfGS~~~l~~~q~~ela~gl~~s~~~FlWv~r~~ 317 (472)
T PLN02670 238 RKPIIPIGFLPPVIEDDEEDDTIDVKGWVRIKEWLDKQRVNSVVYVALGTEASLRREEVTELALGLEKSETPFFWVLRNE 317 (472)
T ss_pred CCCeEEEecCCccccccccccccccchhHHHHHHHhcCCCCceEEEEecccccCCHHHHHHHHHHHHHCCCCEEEEEcCC
Confidence 678999999975311100000 0 1124588999988888999999999999999999999999999999999999863
Q ss_pred CCCCCcccccCchhHHHHhcCCCcee-eecchhhhhccccccccccccchhhHHHhhhcCCceeecCcccchhhHHHHHH
Q 046167 277 TNNAPEGIELLPKVLAEDVQENGYIV-KWAPQKEVLSHVAVGGFWSHCGWNSTLESICEGVPMICMPFFEDQKVNARYLS 355 (424)
Q Consensus 277 ~~~~~~~~~~l~~~~~~~~~~nv~v~-~~ip~~~ll~~~~~~~~i~hgG~~t~~eal~~GvP~v~~P~~~DQ~~na~~~~ 355 (424)
.....+....+|++|.++..++..++ +|+||.+||+|+++++||||||+||++||+++|||+|++|.++||+.||++++
T Consensus 318 ~~~~~~~~~~lp~~f~~~~~~rG~vv~~W~PQ~~IL~H~~v~~FvtHcGwnS~~Eai~~GVP~l~~P~~~DQ~~Na~~v~ 397 (472)
T PLN02670 318 PGTTQNALEMLPDGFEERVKGRGMIHVGWVPQVKILSHESVGGFLTHCGWNSVVEGLGFGRVLILFPVLNEQGLNTRLLH 397 (472)
T ss_pred cccccchhhcCChHHHHhccCCCeEEeCcCCHHHHhcCcccceeeecCCcchHHHHHHcCCCEEeCcchhccHHHHHHHH
Confidence 22111112458999999888777765 99999999999999999999999999999999999999999999999999999
Q ss_pred hhhhcceecCc-----ccchHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHhcC
Q 046167 356 HVWGVGLELEH-----ELERGAVEKAVRKLTVDKEGEFLRQRAAQLKEEVELSTRKGGFSYNSLNELLDLINKF 424 (424)
Q Consensus 356 ~~~G~g~~~~~-----~~~~~~L~~ai~~ll~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~a~~~~~~~~~~~ 424 (424)
+ +|+|+.+.. .++.++|+++|+++|.++++++||+||+++++.+++. ++..+++++|++.+.++
T Consensus 398 ~-~g~Gv~l~~~~~~~~~~~e~i~~av~~vm~~~~g~~~r~~a~~l~~~~~~~----~~~~~~~~~~~~~l~~~ 466 (472)
T PLN02670 398 G-KKLGLEVPRDERDGSFTSDSVAESVRLAMVDDAGEEIRDKAKEMRNLFGDM----DRNNRYVDELVHYLREN 466 (472)
T ss_pred H-cCeeEEeeccccCCcCcHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHhCc----chhHHHHHHHHHHHHHh
Confidence 8 799999964 3799999999999998865668999999999999998 99999999999998753
No 7
>PLN02992 coniferyl-alcohol glucosyltransferase
Probab=100.00 E-value=3.6e-57 Score=438.20 Aligned_cols=404 Identities=32% Similarity=0.561 Sum_probs=313.0
Q ss_pred CCCceEEEEcCCCccChHHHHHHHHHHH-hCCCeEEEEeCCCCCCC----CCCCCCceEEeCCC----CCCCCccccccH
Q 046167 6 QRRRRVVLVPSPHQGHINPMLQLGTILH-SKGFSITVVHTQFNSPN----PSNHPEFEFQSIPD----GLMDVNISARNL 76 (424)
Q Consensus 6 ~~~~ril~~~~~~~GH~~p~~~la~~L~-~~Gh~V~~~~~~~~~~~----~~~~~g~~~~~~~~----~~~~~~~~~~~~ 76 (424)
..+.||+++|++++||++|++.||+.|+ .+|++|||++++.+... .....++.++.+|. ++++.. .+.
T Consensus 3 ~~~pHVvl~P~paqGHi~P~l~LAk~La~~~g~~vT~v~t~~n~~~~~~~~~~~~~i~~~~lp~p~~~glp~~~---~~~ 79 (481)
T PLN02992 3 ITKPHAAMFSSPGMGHVIPVIELGKRLSANHGFHVTVFVLETDAASAQSKFLNSTGVDIVGLPSPDISGLVDPS---AHV 79 (481)
T ss_pred CCCcEEEEeCCcccchHHHHHHHHHHHHhCCCcEEEEEeCCCchhhhhhccccCCCceEEECCCccccCCCCCC---ccH
Confidence 3457999999999999999999999998 78999999999866422 11223688998884 443111 122
Q ss_pred HHHHHHHHHhchhHHHHHHHHHHhhcCCCCCceEEEecCccchHHHHHHHhCCceEEEecchHHHHHHHHhhhccc----
Q 046167 77 VDSILLLNENCREPFRNWLVQMIKEQQPGDEIVCIIYDEVMYFAEASASQLNVQSIILRTSGAVTVVARLVLFQLK---- 152 (424)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pDlvi~d~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~---- 152 (424)
...+......+...++++++++. . +|++||+|.+..|+..+|+++|||++.++++++...+.+.+.+...
T Consensus 80 ~~~~~~~~~~~~~~~~~~l~~~~----~--~p~cvV~D~f~~Wa~dVA~elgIP~v~F~t~sA~~~~~~~~~~~~~~~~~ 153 (481)
T PLN02992 80 VTKIGVIMREAVPTLRSKIAEMH----Q--KPTALIVDLFGTDALCLGGEFNMLTYIFIASNARFLGVSIYYPTLDKDIK 153 (481)
T ss_pred HHHHHHHHHHhHHHHHHHHHhcC----C--CCeEEEECCcchhHHHHHHHcCCCEEEEecCcHHHHHHHHhhhhhccccc
Confidence 22233333344556666665541 1 6899999999999999999999999999999887766544332100
Q ss_pred -----------ccCCCCCChhH------------HHHHHH-hhhccCCceEEecChhhhhHHHHHHHHhc------cCCC
Q 046167 153 -----------EEGYNPLKESY------------VQLINN-AYSARTSSAVISNTIYCLEESVLSQLQQY------FKVP 202 (424)
Q Consensus 153 -----------~~~~~p~~~~~------------~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~------~~~~ 202 (424)
-++..+.+... ...+.+ ......++++++|||++||+.+++.+... ..++
T Consensus 154 ~~~~~~~~~~~iPg~~~l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~a~gvlvNTf~eLE~~~l~~l~~~~~~~~~~~~~ 233 (481)
T PLN02992 154 EEHTVQRKPLAMPGCEPVRFEDTLDAYLVPDEPVYRDFVRHGLAYPKADGILVNTWEEMEPKSLKSLQDPKLLGRVARVP 233 (481)
T ss_pred cccccCCCCcccCCCCccCHHHhhHhhcCCCcHHHHHHHHHHHhcccCCEEEEechHHHhHHHHHHHhhccccccccCCc
Confidence 01111111111 233334 45567789999999999999999988642 1357
Q ss_pred eeeecccccCCCCCCCCCcccccccccccccCCCCeEEEEEeCCcccCCHHHHHHHHHHHHhCCCCeEEEEcCCCCCC--
Q 046167 203 NFPIGPLHKFAPSSNGSLLKEDTSCISWLNNQSPKSVIYVSLGSVASMDKKELEEMAWGLVNSKQPFLWVIRPRTNNA-- 280 (424)
Q Consensus 203 ~~~vGp~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~I~vs~Gs~~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~~~~-- 280 (424)
++.|||++..... ...++++.+||+.++++++|||||||....+.+++++++.+|+.++++|||+++.+...+
T Consensus 234 v~~VGPl~~~~~~-----~~~~~~c~~wLd~~~~~sVvyvsfGS~~~l~~~q~~ela~gL~~s~~~flW~~r~~~~~~~~ 308 (481)
T PLN02992 234 VYPIGPLCRPIQS-----SKTDHPVLDWLNKQPNESVLYISFGSGGSLSAKQLTELAWGLEMSQQRFVWVVRPPVDGSAC 308 (481)
T ss_pred eEEecCccCCcCC-----CcchHHHHHHHHcCCCCceEEEeecccccCCHHHHHHHHHHHHHcCCCEEEEEeCCcccccc
Confidence 9999999754211 123456899999888889999999999999999999999999999999999997531100
Q ss_pred -----------Cc-ccccCchhHHHHhcCCCc-eeeecchhhhhccccccccccccchhhHHHhhhcCCceeecCcccch
Q 046167 281 -----------PE-GIELLPKVLAEDVQENGY-IVKWAPQKEVLSHVAVGGFWSHCGWNSTLESICEGVPMICMPFFEDQ 347 (424)
Q Consensus 281 -----------~~-~~~~l~~~~~~~~~~nv~-v~~~ip~~~ll~~~~~~~~i~hgG~~t~~eal~~GvP~v~~P~~~DQ 347 (424)
.+ ..+.+|++|.|+..++.. +.+|+||.+||+|+++++||||||+||++||+++|||+|++|+++||
T Consensus 309 ~~~~~~~~~~~~~~~~~~lp~~f~eR~~~rg~vv~~W~PQ~~iL~h~~vg~FitH~G~nS~~Eal~~GVP~l~~P~~~DQ 388 (481)
T PLN02992 309 SAYFSANGGETRDNTPEYLPEGFVSRTHDRGFVVPSWAPQAEILAHQAVGGFLTHCGWSSTLESVVGGVPMIAWPLFAEQ 388 (481)
T ss_pred cccccCcccccccchhhhCCHHHHHHhcCCCEEEeecCCHHHHhCCcccCeeEecCchhHHHHHHHcCCCEEecCccchh
Confidence 00 023588999998886554 45999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHH-hhhhcceecCc---ccchHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHhh--cCCCcHHHHHHHHHHH
Q 046167 348 KVNARYLS-HVWGVGLELEH---ELERGAVEKAVRKLTVDKEGEFLRQRAAQLKEEVELSTR--KGGFSYNSLNELLDLI 421 (424)
Q Consensus 348 ~~na~~~~-~~~G~g~~~~~---~~~~~~L~~ai~~ll~~~~~~~~~~~a~~l~~~~~~~~~--~~g~~~~a~~~~~~~~ 421 (424)
+.||++++ + +|+|+.++. .++.++|.++|++++.+++++.+++++++++++.++++. +||+++++++++++.+
T Consensus 389 ~~na~~~~~~-~g~gv~~~~~~~~~~~~~l~~av~~vm~~~~g~~~r~~a~~~~~~a~~Av~~~~GGSS~~~l~~~v~~~ 467 (481)
T PLN02992 389 NMNAALLSDE-LGIAVRSDDPKEVISRSKIEALVRKVMVEEEGEEMRRKVKKLRDTAEMSLSIDGGGVAHESLCRVTKEC 467 (481)
T ss_pred HHHHHHHHHH-hCeeEEecCCCCcccHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHH
Confidence 99999995 7 799999965 489999999999999886677999999999999999995 5999999999999998
Q ss_pred hcC
Q 046167 422 NKF 424 (424)
Q Consensus 422 ~~~ 424 (424)
.++
T Consensus 468 ~~~ 470 (481)
T PLN02992 468 QRF 470 (481)
T ss_pred HHH
Confidence 763
No 8
>PLN02448 UDP-glycosyltransferase family protein
Probab=100.00 E-value=3.6e-57 Score=442.50 Aligned_cols=399 Identities=30% Similarity=0.503 Sum_probs=313.4
Q ss_pred CceEEEEcCCCccChHHHHHHHHHHHhC--CCeEEEEeCCCCCCCCCC---CCCceEEeCCCCCCCCccccccHHHHHHH
Q 046167 8 RRRVVLVPSPHQGHINPMLQLGTILHSK--GFSITVVHTQFNSPNPSN---HPEFEFQSIPDGLMDVNISARNLVDSILL 82 (424)
Q Consensus 8 ~~ril~~~~~~~GH~~p~~~la~~L~~~--Gh~V~~~~~~~~~~~~~~---~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (424)
+.||+++|+|+.||++|++.||++|+.+ ||+||+++++.+...... ..+++|+.+|++++.+.....+....+..
T Consensus 10 ~~hVvlvp~pa~GHi~P~l~LA~~L~~~~~G~~VT~~~t~~~~~~i~~~~~~~gi~fv~lp~~~p~~~~~~~~~~~~~~~ 89 (459)
T PLN02448 10 SCHVVAMPYPGRGHINPMMNLCKLLASRKPDILITFVVTEEWLGLIGSDPKPDNIRFATIPNVIPSELVRAADFPGFLEA 89 (459)
T ss_pred CcEEEEECCcccccHHHHHHHHHHHHcCCCCcEEEEEeCCchHhHhhccCCCCCEEEEECCCCCCCccccccCHHHHHHH
Confidence 5899999999999999999999999999 999999999855433221 14899999997766543222344444555
Q ss_pred HHHhchhHHHHHHHHHHhhcCCCCCceEEEecCccchHHHHHHHhCCceEEEecchHHHHHHHHhhhccc--------c-
Q 046167 83 LNENCREPFRNWLVQMIKEQQPGDEIVCIIYDEVMYFAEASASQLNVQSIILRTSGAVTVVARLVLFQLK--------E- 153 (424)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~pDlvi~d~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~--------~- 153 (424)
+.+.+...++++++.+. . ++|+||+|.+..|+..+|+++|||++.+++.++...+.+.+.+... .
T Consensus 90 ~~~~~~~~~~~~l~~~~----~--~~~~VI~D~~~~wa~~vA~~lgIP~v~f~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 163 (459)
T PLN02448 90 VMTKMEAPFEQLLDRLE----P--PVTAIVADTYLFWAVGVGNRRNIPVASLWTMSATFFSVFYHFDLLPQNGHFPVELS 163 (459)
T ss_pred HHHHhHHHHHHHHHhcC----C--CcEEEEECCccHHHHHHHHHhCCCeEEEEhHHHHHHHHHHHhhhhhhccCCCCccc
Confidence 54456666667766653 1 6899999999999999999999999999999986665544332110 0
Q ss_pred ---cC---CCCC----Chh------------HHHHHHH-hhhccCCceEEecChhhhhHHHHHHHHhccCCCeeeecccc
Q 046167 154 ---EG---YNPL----KES------------YVQLINN-AYSARTSSAVISNTIYCLEESVLSQLQQYFKVPNFPIGPLH 210 (424)
Q Consensus 154 ---~~---~~p~----~~~------------~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vGp~~ 210 (424)
.. ..|. ... ..+.+.+ ......++.+++|||+++|+..++.+...++.+++.|||+.
T Consensus 164 ~~~~~~~~~iPg~~~l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~l~~~~~~~~~~iGP~~ 243 (459)
T PLN02448 164 ESGEERVDYIPGLSSTRLSDLPPIFHGNSRRVLKRILEAFSWVPKAQYLLFTSFYELEAQAIDALKSKFPFPVYPIGPSI 243 (459)
T ss_pred cccCCccccCCCCCCCChHHCchhhcCCchHHHHHHHHHHhhcccCCEEEEccHHHhhHHHHHHHHhhcCCceEEecCcc
Confidence 00 1221 110 0223333 44456678999999999999999998877767899999997
Q ss_pred cCCCCCC-CCC--c-ccccccccccccCCCCeEEEEEeCCcccCCHHHHHHHHHHHHhCCCCeEEEEcCCCCCCCccccc
Q 046167 211 KFAPSSN-GSL--L-KEDTSCISWLNNQSPKSVIYVSLGSVASMDKKELEEMAWGLVNSKQPFLWVIRPRTNNAPEGIEL 286 (424)
Q Consensus 211 ~~~~~~~-~~~--~-~~~~~l~~~l~~~~~~~~I~vs~Gs~~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~ 286 (424)
....... ... . +.+.++.+|++.++++++|||||||....+.++++.++.+++.+++++||+++.+
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~~~vvyvsfGs~~~~~~~~~~~~~~~l~~~~~~~lw~~~~~---------- 313 (459)
T PLN02448 244 PYMELKDNSSSSNNEDNEPDYFQWLDSQPEGSVLYVSLGSFLSVSSAQMDEIAAGLRDSGVRFLWVARGE---------- 313 (459)
T ss_pred cccccCCCccccccccchhHHHHHHcCCCCCceEEEeecccccCCHHHHHHHHHHHHhCCCCEEEEEcCc----------
Confidence 5321100 000 1 1223588999988889999999999988889999999999999999999988532
Q ss_pred CchhHHHHhcCCCceeeecchhhhhccccccccccccchhhHHHhhhcCCceeecCcccchhhHHHHHHhhhhcceecCc
Q 046167 287 LPKVLAEDVQENGYIVKWAPQKEVLSHVAVGGFWSHCGWNSTLESICEGVPMICMPFFEDQKVNARYLSHVWGVGLELEH 366 (424)
Q Consensus 287 l~~~~~~~~~~nv~v~~~ip~~~ll~~~~~~~~i~hgG~~t~~eal~~GvP~v~~P~~~DQ~~na~~~~~~~G~g~~~~~ 366 (424)
...+.+..++|+++++|+||.+||+|+++++||||||+||++||+++|||||++|+++||+.||+++++.+|+|+.+..
T Consensus 314 -~~~~~~~~~~~~~v~~w~pQ~~iL~h~~v~~fvtHgG~nS~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~g~G~~~~~ 392 (459)
T PLN02448 314 -ASRLKEICGDMGLVVPWCDQLKVLCHSSVGGFWTHCGWNSTLEAVFAGVPMLTFPLFWDQPLNSKLIVEDWKIGWRVKR 392 (459)
T ss_pred -hhhHhHhccCCEEEeccCCHHHHhccCccceEEecCchhHHHHHHHcCCCEEeccccccchhhHHHHHHHhCceEEEec
Confidence 1234444557889999999999999999999999999999999999999999999999999999999875688888742
Q ss_pred ------ccchHHHHHHHHHHhccc--chHHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHhc
Q 046167 367 ------ELERGAVEKAVRKLTVDK--EGEFLRQRAAQLKEEVELSTRKGGFSYNSLNELLDLINK 423 (424)
Q Consensus 367 ------~~~~~~L~~ai~~ll~~~--~~~~~~~~a~~l~~~~~~~~~~~g~~~~a~~~~~~~~~~ 423 (424)
..++++|+++|+++|.++ +++++|++|++++++.++++.+||++++.+++|++.+.+
T Consensus 393 ~~~~~~~~~~~~l~~av~~vl~~~~~~~~~~r~~a~~~~~~~~~a~~~gGss~~~l~~~v~~~~~ 457 (459)
T PLN02448 393 EVGEETLVGREEIAELVKRFMDLESEEGKEMRRRAKELQEICRGAIAKGGSSDTNLDAFIRDISQ 457 (459)
T ss_pred ccccCCcCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhc
Confidence 479999999999999863 367999999999999999999999999999999999864
No 9
>PLN02863 UDP-glucoronosyl/UDP-glucosyl transferase family protein
Probab=100.00 E-value=1.4e-56 Score=436.74 Aligned_cols=408 Identities=26% Similarity=0.424 Sum_probs=308.1
Q ss_pred CceEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCCCCCCCC----CCCCCceEEeCC----CCCCCCccccccH---
Q 046167 8 RRRVVLVPSPHQGHINPMLQLGTILHSKGFSITVVHTQFNSPNP----SNHPEFEFQSIP----DGLMDVNISARNL--- 76 (424)
Q Consensus 8 ~~ril~~~~~~~GH~~p~~~la~~L~~~Gh~V~~~~~~~~~~~~----~~~~g~~~~~~~----~~~~~~~~~~~~~--- 76 (424)
+.||+++|++++||++|++.||+.|+.+|+.|||++++.+.... ....+++++.+| .+++++.....+.
T Consensus 9 ~~HVvl~PfpaqGHi~P~l~LAk~La~~G~~VTfv~T~~n~~~~~~~~~~~~~i~~~~lp~P~~~~lPdG~~~~~~~~~~ 88 (477)
T PLN02863 9 GTHVLVFPFPAQGHMIPLLDLTHRLALRGLTITVLVTPKNLPFLNPLLSKHPSIETLVLPFPSHPSIPSGVENVKDLPPS 88 (477)
T ss_pred CCEEEEecCcccchHHHHHHHHHHHHhCCCEEEEEeCCCcHHHHhhhcccCCCeeEEeCCCCCcCCCCCCCcChhhcchh
Confidence 68999999999999999999999999999999999998665321 112357777654 2444443222221
Q ss_pred -HHHHHHHHHhchhHHHHHHHHHHhhcCCCCCceEEEecCccchHHHHHHHhCCceEEEecchHHHHHHHHhhhccc---
Q 046167 77 -VDSILLLNENCREPFRNWLVQMIKEQQPGDEIVCIIYDEVMYFAEASASQLNVQSIILRTSGAVTVVARLVLFQLK--- 152 (424)
Q Consensus 77 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pDlvi~d~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~--- 152 (424)
...+......+...+.++++.. .. +|++||+|.+..|+..+|+++|||++.+++++++..+.+.++....
T Consensus 89 ~~~~~~~a~~~~~~~~~~~l~~~----~~--~p~cvI~D~f~~Wa~dVA~e~GIP~~~F~t~sA~~~~~~~~~~~~~~~~ 162 (477)
T PLN02863 89 GFPLMIHALGELYAPLLSWFRSH----PS--PPVAIISDMFLGWTQNLACQLGIRRFVFSPSGAMALSIMYSLWREMPTK 162 (477)
T ss_pred hHHHHHHHHHHhHHHHHHHHHhC----CC--CCeEEEEcCchHhHHHHHHHcCCCEEEEeccCHHHHHHHHHHhhccccc
Confidence 1112222223333444444332 12 6899999999999999999999999999999998887765532110
Q ss_pred ----c--cC----CCC----CChh--------------HHHHHHH-hhhccCCceEEecChhhhhHHHHHHHHhccC-CC
Q 046167 153 ----E--EG----YNP----LKES--------------YVQLINN-AYSARTSSAVISNTIYCLEESVLSQLQQYFK-VP 202 (424)
Q Consensus 153 ----~--~~----~~p----~~~~--------------~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~ 202 (424)
. .. ..| .+.. ....+.+ ......++++++|||+++|+.+++.+...++ ++
T Consensus 163 ~~~~~~~~~~~~~~iPg~~~~~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~~~~~~~~~~ 242 (477)
T PLN02863 163 INPDDQNEILSFSKIPNCPKYPWWQISSLYRSYVEGDPAWEFIKDSFRANIASWGLVVNSFTELEGIYLEHLKKELGHDR 242 (477)
T ss_pred ccccccccccccCCCCCCCCcChHhCchhhhccCccchHHHHHHHHHhhhccCCEEEEecHHHHHHHHHHHHHhhcCCCC
Confidence 0 00 122 1111 1122223 3334567889999999999999999987665 67
Q ss_pred eeeecccccCCCCC------CCCCcccccccccccccCCCCeEEEEEeCCcccCCHHHHHHHHHHHHhCCCCeEEEEcCC
Q 046167 203 NFPIGPLHKFAPSS------NGSLLKEDTSCISWLNNQSPKSVIYVSLGSVASMDKKELEEMAWGLVNSKQPFLWVIRPR 276 (424)
Q Consensus 203 ~~~vGp~~~~~~~~------~~~~~~~~~~l~~~l~~~~~~~~I~vs~Gs~~~~~~~~~~~~~~a~~~~~~~~i~~~~~~ 276 (424)
+++|||++...... ..+....++++.+||+.++++++|||||||....+.+++..++.+++.+++++||+++..
T Consensus 243 v~~IGPL~~~~~~~~~~~~~~~~~~~~~~~~~~WLd~~~~~svVyvsfGS~~~~~~~~~~ela~gL~~~~~~flw~~~~~ 322 (477)
T PLN02863 243 VWAVGPILPLSGEKSGLMERGGPSSVSVDDVMTWLDTCEDHKVVYVCFGSQVVLTKEQMEALASGLEKSGVHFIWCVKEP 322 (477)
T ss_pred eEEeCCCcccccccccccccCCcccccHHHHHHHHhcCCCCceEEEEeeceecCCHHHHHHHHHHHHhCCCcEEEEECCC
Confidence 99999997532100 001111234689999988889999999999998889999999999999999999999754
Q ss_pred CCCCCcccccCchhHHHHhc-CCCceeeecchhhhhccccccccccccchhhHHHhhhcCCceeecCcccchhhHHHHHH
Q 046167 277 TNNAPEGIELLPKVLAEDVQ-ENGYIVKWAPQKEVLSHVAVGGFWSHCGWNSTLESICEGVPMICMPFFEDQKVNARYLS 355 (424)
Q Consensus 277 ~~~~~~~~~~l~~~~~~~~~-~nv~v~~~ip~~~ll~~~~~~~~i~hgG~~t~~eal~~GvP~v~~P~~~DQ~~na~~~~ 355 (424)
.... .....+|+++.++.. .++++.+|+||.++|+|+++++||||||+||++||+++|||+|++|+++||+.||+++.
T Consensus 323 ~~~~-~~~~~lp~~~~~r~~~~g~~v~~w~PQ~~vL~h~~v~~fvtH~G~nS~~Eal~~GvP~l~~P~~~DQ~~na~~v~ 401 (477)
T PLN02863 323 VNEE-SDYSNIPSGFEDRVAGRGLVIRGWAPQVAILSHRAVGAFLTHCGWNSVLEGLVAGVPMLAWPMAADQFVNASLLV 401 (477)
T ss_pred cccc-cchhhCCHHHHHHhccCCEEecCCCCHHHHhcCCCcCeEEecCCchHHHHHHHcCCCEEeCCccccchhhHHHHH
Confidence 2111 012358888877765 45566699999999999999999999999999999999999999999999999999976
Q ss_pred hhhhcceecCc----ccchHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHhcC
Q 046167 356 HVWGVGLELEH----ELERGAVEKAVRKLTVDKEGEFLRQRAAQLKEEVELSTRKGGFSYNSLNELLDLINKF 424 (424)
Q Consensus 356 ~~~G~g~~~~~----~~~~~~L~~ai~~ll~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~a~~~~~~~~~~~ 424 (424)
+.+|+|+.+.. ..+.+++.++|++++.+. +.||+||++++++.++++.+||++++.+++|++.+.++
T Consensus 402 ~~~gvG~~~~~~~~~~~~~~~v~~~v~~~m~~~--~~~r~~a~~l~e~a~~Av~~gGSS~~~l~~~v~~i~~~ 472 (477)
T PLN02863 402 DELKVAVRVCEGADTVPDSDELARVFMESVSEN--QVERERAKELRRAALDAIKERGSSVKDLDGFVKHVVEL 472 (477)
T ss_pred HhhceeEEeccCCCCCcCHHHHHHHHHHHhhcc--HHHHHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHh
Confidence 54899999842 358999999999999422 89999999999999999999999999999999998764
No 10
>PLN03007 UDP-glucosyltransferase family protein
Probab=100.00 E-value=8.5e-57 Score=442.03 Aligned_cols=415 Identities=28% Similarity=0.486 Sum_probs=307.1
Q ss_pred cCCCCceEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCCCCCCCCCC--------CC----CceEEeCC---CCCCC
Q 046167 4 QGQRRRRVVLVPSPHQGHINPMLQLGTILHSKGFSITVVHTQFNSPNPSN--------HP----EFEFQSIP---DGLMD 68 (424)
Q Consensus 4 m~~~~~ril~~~~~~~GH~~p~~~la~~L~~~Gh~V~~~~~~~~~~~~~~--------~~----g~~~~~~~---~~~~~ 68 (424)
|.+++.||+++|+|+.||++|++.||+.|+.|||+|||++++.+...... .+ .+....+| .+++.
T Consensus 1 ~~~~~~hVvlvp~pa~GHi~P~L~LAk~L~~rG~~VT~vtt~~~~~~i~~~~a~~~~~~~~~~~~~~~~~~p~~~~glP~ 80 (482)
T PLN03007 1 MNHEKLHILFFPFMAHGHMIPTLDMAKLFSSRGAKSTILTTPLNAKIFEKPIEAFKNLNPGLEIDIQIFNFPCVELGLPE 80 (482)
T ss_pred CCCCCcEEEEECCCccccHHHHHHHHHHHHhCCCEEEEEECCCchhhhhhhhhhhcccCCCCcceEEEeeCCCCcCCCCC
Confidence 55567899999999999999999999999999999999999855422110 11 34445555 35655
Q ss_pred Cccccc--------cHHHHHHHHHHhchhHHHHHHHHHHhhcCCCCCceEEEecCccchHHHHHHHhCCceEEEecchHH
Q 046167 69 VNISAR--------NLVDSILLLNENCREPFRNWLVQMIKEQQPGDEIVCIIYDEVMYFAEASASQLNVQSIILRTSGAV 140 (424)
Q Consensus 69 ~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pDlvi~d~~~~~~~~~A~~lgiP~v~~~~~~~~ 140 (424)
+..... .....+..+. .....+.+.++++.+.. +||+||+|.++.|+..+|+++|||++++++++++
T Consensus 81 g~e~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~l~~~l~~~----~~~~IV~D~~~~w~~~vA~~lgIP~v~f~~~~a~ 155 (482)
T PLN03007 81 GCENVDFITSNNNDDSGDLFLKFL-FSTKYFKDQLEKLLETT----RPDCLVADMFFPWATEAAEKFGVPRLVFHGTGYF 155 (482)
T ss_pred CcccccccccccccchHHHHHHHH-HHHHHHHHHHHHHHhcC----CCCEEEECCcchhHHHHHHHhCCCeEEeecccHH
Confidence 432111 1223333333 22233444444443321 7999999999999999999999999999998776
Q ss_pred HHHHHHhhhcc-------------cccCCCC---C-------Ch--h-HHHHHHH-hhhccCCceEEecChhhhhHHHHH
Q 046167 141 TVVARLVLFQL-------------KEEGYNP---L-------KE--S-YVQLINN-AYSARTSSAVISNTIYCLEESVLS 193 (424)
Q Consensus 141 ~~~~~~~~~~~-------------~~~~~~p---~-------~~--~-~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~ 193 (424)
....+...... .-+++.+ . .. . ....+.. .....+++++++|++++++...++
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~pg~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~Nt~~~le~~~~~ 235 (482)
T PLN03007 156 SLCASYCIRVHKPQKKVASSSEPFVIPDLPGDIVITEEQINDADEESPMGKFMKEVRESEVKSFGVLVNSFYELESAYAD 235 (482)
T ss_pred HHHHHHHHHhcccccccCCCCceeeCCCCCCccccCHHhcCCCCCchhHHHHHHHHHhhcccCCEEEEECHHHHHHHHHH
Confidence 65543311100 0111110 0 00 1 1222223 345677889999999999999888
Q ss_pred HHHhccCCCeeeecccccCCCCC------CCCCcccccccccccccCCCCeEEEEEeCCcccCCHHHHHHHHHHHHhCCC
Q 046167 194 QLQQYFKVPNFPIGPLHKFAPSS------NGSLLKEDTSCISWLNNQSPKSVIYVSLGSVASMDKKELEEMAWGLVNSKQ 267 (424)
Q Consensus 194 ~~~~~~~~~~~~vGp~~~~~~~~------~~~~~~~~~~l~~~l~~~~~~~~I~vs~Gs~~~~~~~~~~~~~~a~~~~~~ 267 (424)
.+.+..+.++++|||+....... ....+..+.++.+|++.++++++|||||||....+.+.+..++.+++.+++
T Consensus 236 ~~~~~~~~~~~~VGPl~~~~~~~~~~~~~~~~~~~~~~~~~~wLd~~~~~svvyvsfGS~~~~~~~~~~~~~~~l~~~~~ 315 (482)
T PLN03007 236 FYKSFVAKRAWHIGPLSLYNRGFEEKAERGKKANIDEQECLKWLDSKKPDSVIYLSFGSVASFKNEQLFEIAAGLEGSGQ 315 (482)
T ss_pred HHHhccCCCEEEEccccccccccccccccCCccccchhHHHHHHhcCCCCceEEEeecCCcCCCHHHHHHHHHHHHHCCC
Confidence 88776656899999976432110 001111235589999988889999999999988888999999999999999
Q ss_pred CeEEEEcCCCCCCCcccccCchhHHHHhc-CCCceeeecchhhhhccccccccccccchhhHHHhhhcCCceeecCcccc
Q 046167 268 PFLWVIRPRTNNAPEGIELLPKVLAEDVQ-ENGYIVKWAPQKEVLSHVAVGGFWSHCGWNSTLESICEGVPMICMPFFED 346 (424)
Q Consensus 268 ~~i~~~~~~~~~~~~~~~~l~~~~~~~~~-~nv~v~~~ip~~~ll~~~~~~~~i~hgG~~t~~eal~~GvP~v~~P~~~D 346 (424)
+|||+++.+...+ +....+|+++.++.. .|+++.+|+||.+||+|+++++||||||+||++||+++|||+|++|+++|
T Consensus 316 ~flw~~~~~~~~~-~~~~~lp~~~~~r~~~~g~~v~~w~PQ~~iL~h~~v~~fvtH~G~nS~~Eal~~GVP~v~~P~~~D 394 (482)
T PLN03007 316 NFIWVVRKNENQG-EKEEWLPEGFEERTKGKGLIIRGWAPQVLILDHQATGGFVTHCGWNSLLEGVAAGLPMVTWPVGAE 394 (482)
T ss_pred CEEEEEecCCccc-chhhcCCHHHHHHhccCCEEEecCCCHHHHhccCccceeeecCcchHHHHHHHcCCCeeeccchhh
Confidence 9999998642211 111358889888764 56777799999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHhhhhcceec--------Cc-ccchHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHhhcCCCcHHHHHHH
Q 046167 347 QKVNARYLSHVWGVGLEL--------EH-ELERGAVEKAVRKLTVDKEGEFLRQRAAQLKEEVELSTRKGGFSYNSLNEL 417 (424)
Q Consensus 347 Q~~na~~~~~~~G~g~~~--------~~-~~~~~~L~~ai~~ll~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~a~~~~ 417 (424)
|+.||+++++.+++|+.+ +. .+++++|.++|+++|.+++++.||+||+++++..++++.+||++++++++|
T Consensus 395 Q~~na~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~l~~av~~~m~~~~~~~~r~~a~~~~~~a~~a~~~gGsS~~~l~~~ 474 (482)
T PLN03007 395 QFYNEKLVTQVLRTGVSVGAKKLVKVKGDFISREKVEKAVREVIVGEEAEERRLRAKKLAEMAKAAVEEGGSSFNDLNKF 474 (482)
T ss_pred hhhhHHHHHHhhcceeEeccccccccccCcccHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHH
Confidence 999999887434555443 23 579999999999999986566999999999999999999999999999999
Q ss_pred HHHHhcC
Q 046167 418 LDLINKF 424 (424)
Q Consensus 418 ~~~~~~~ 424 (424)
++.+.++
T Consensus 475 v~~~~~~ 481 (482)
T PLN03007 475 MEELNSR 481 (482)
T ss_pred HHHHHhc
Confidence 9998763
No 11
>PLN02207 UDP-glycosyltransferase
Probab=100.00 E-value=3.8e-56 Score=430.37 Aligned_cols=408 Identities=21% Similarity=0.409 Sum_probs=312.8
Q ss_pred ceEEEEcCCCccChHHHHHHHHHHHhCC--CeEEEEeCCCCCC-C----C----CCCCCceEEeCCCCCCCCc-cccccH
Q 046167 9 RRVVLVPSPHQGHINPMLQLGTILHSKG--FSITVVHTQFNSP-N----P----SNHPEFEFQSIPDGLMDVN-ISARNL 76 (424)
Q Consensus 9 ~ril~~~~~~~GH~~p~~~la~~L~~~G--h~V~~~~~~~~~~-~----~----~~~~g~~~~~~~~~~~~~~-~~~~~~ 76 (424)
.|++++|+++.||++|++.||+.|+.+| ..||+++++.+.. . . ...++++|+.+|+...... ....+.
T Consensus 4 ~hvv~~P~p~qGHi~P~l~lA~~La~~gg~~~vT~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~~~~~~~~~~ 83 (468)
T PLN02207 4 AELIFIPTPTVGHLVPFLEFARRLIEQDDRIRITILLMKLQGQSHLDTYVKSIASSQPFVRFIDVPELEEKPTLGGTQSV 83 (468)
T ss_pred cEEEEeCCcchhhHHHHHHHHHHHHhCCCCeEEEEEEcCCCcchhhHHhhhhccCCCCCeEEEEeCCCCCCCccccccCH
Confidence 5999999999999999999999999998 9999999986541 0 1 1124699999995432111 112334
Q ss_pred HHHHHHHHHhchhHHHHHHHHHHhhc--CCCCCc-eEEEecCccchHHHHHHHhCCceEEEecchHHHHHHHHhhhccc-
Q 046167 77 VDSILLLNENCREPFRNWLVQMIKEQ--QPGDEI-VCIIYDEVMYFAEASASQLNVQSIILRTSGAVTVVARLVLFQLK- 152 (424)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~p-Dlvi~d~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~- 152 (424)
...+......+...+++.++++.+.. +. +| ++||+|.+..|+..+|+++|||++.++++++.....+.+.+...
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~pv~cvV~D~~~~w~~~vA~~~gip~~~f~~~~a~~~~~~~~~~~~~~ 161 (468)
T PLN02207 84 EAYVYDVIEKNIPLVRNIVMDILSSLALDG--VKVKGFVADFFCLPMIDVAKDVSLPFYVFLTTNSGFLAMMQYLADRHS 161 (468)
T ss_pred HHHHHHHHHhcchhHHHHHHHHHHHhccCC--CCeEEEEECCcchHHHHHHHHhCCCEEEEECccHHHHHHHHHhhhccc
Confidence 44444444455444444444443211 11 34 99999999999999999999999999999987777654432111
Q ss_pred ---------------ccCCC-CCChhH----------HHHHHH-hhhccCCceEEecChhhhhHHHHHHHHh-ccCCCee
Q 046167 153 ---------------EEGYN-PLKESY----------VQLINN-AYSARTSSAVISNTIYCLEESVLSQLQQ-YFKVPNF 204 (424)
Q Consensus 153 ---------------~~~~~-p~~~~~----------~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~ 204 (424)
-+++. +..... +..+.+ .....+++++++||++++|.+.++.+.. ...++++
T Consensus 162 ~~~~~~~~~~~~~~~vPgl~~~l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~vlvNtf~~LE~~~~~~~~~~~~~p~v~ 241 (468)
T PLN02207 162 KDTSVFVRNSEEMLSIPGFVNPVPANVLPSALFVEDGYDAYVKLAILFTKANGILVNSSFDIEPYSVNHFLDEQNYPSVY 241 (468)
T ss_pred cccccCcCCCCCeEECCCCCCCCChHHCcchhcCCccHHHHHHHHHhcccCCEEEEEchHHHhHHHHHHHHhccCCCcEE
Confidence 01111 111110 233344 5556788999999999999999888854 2336799
Q ss_pred eecccccCCCCCCCC-CcccccccccccccCCCCeEEEEEeCCcccCCHHHHHHHHHHHHhCCCCeEEEEcCCCCCCCcc
Q 046167 205 PIGPLHKFAPSSNGS-LLKEDTSCISWLNNQSPKSVIYVSLGSVASMDKKELEEMAWGLVNSKQPFLWVIRPRTNNAPEG 283 (424)
Q Consensus 205 ~vGp~~~~~~~~~~~-~~~~~~~l~~~l~~~~~~~~I~vs~Gs~~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~ 283 (424)
.|||++......... ....++++.+||+.++++++|||||||....+.+++++++.+++.++++|||+++......
T Consensus 242 ~VGPl~~~~~~~~~~~~~~~~~~~~~WLd~~~~~sVVyvSfGS~~~~~~~q~~ela~~l~~~~~~flW~~r~~~~~~--- 318 (468)
T PLN02207 242 AVGPIFDLKAQPHPEQDLARRDELMKWLDDQPEASVVFLCFGSMGRLRGPLVKEIAHGLELCQYRFLWSLRTEEVTN--- 318 (468)
T ss_pred EecCCcccccCCCCccccchhhHHHHHHhcCCCCcEEEEEeccCcCCCHHHHHHHHHHHHHCCCcEEEEEeCCCccc---
Confidence 999998542210110 1112346999999888889999999999989999999999999999999999998532111
Q ss_pred cccCchhHHHHhcCCCceeeecchhhhhccccccccccccchhhHHHhhhcCCceeecCcccchhhHHHHHHhhhhccee
Q 046167 284 IELLPKVLAEDVQENGYIVKWAPQKEVLSHVAVGGFWSHCGWNSTLESICEGVPMICMPFFEDQKVNARYLSHVWGVGLE 363 (424)
Q Consensus 284 ~~~l~~~~~~~~~~nv~v~~~ip~~~ll~~~~~~~~i~hgG~~t~~eal~~GvP~v~~P~~~DQ~~na~~~~~~~G~g~~ 363 (424)
.+.+|++|.++.++|+.+++|+||.+||+|+++++||||||+||++||+++|||||++|+++||+.||+++++.+|+|+.
T Consensus 319 ~~~lp~~f~er~~~~g~i~~W~PQ~~IL~H~~vg~FvTH~GwnS~~Eai~~GVP~l~~P~~~DQ~~Na~~~~~~~gvGv~ 398 (468)
T PLN02207 319 DDLLPEGFLDRVSGRGMICGWSPQVEILAHKAVGGFVSHCGWNSIVESLWFGVPIVTWPMYAEQQLNAFLMVKELKLAVE 398 (468)
T ss_pred cccCCHHHHhhcCCCeEEEEeCCHHHHhcccccceeeecCccccHHHHHHcCCCEEecCccccchhhHHHHHHHhCceEE
Confidence 23588999999999999999999999999999999999999999999999999999999999999999987664799986
Q ss_pred cC------c--ccchHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHh
Q 046167 364 LE------H--ELERGAVEKAVRKLTVDKEGEFLRQRAAQLKEEVELSTRKGGFSYNSLNELLDLIN 422 (424)
Q Consensus 364 ~~------~--~~~~~~L~~ai~~ll~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~a~~~~~~~~~ 422 (424)
+. . ..+.++|.++|+++|.+ ++++||+||+++++.+++++.+||++++.++++++.+.
T Consensus 399 ~~~~~~~~~~~~v~~e~i~~av~~vm~~-~~~~~r~~a~~l~~~a~~A~~~GGSS~~~l~~~v~~~~ 464 (468)
T PLN02207 399 LKLDYRVHSDEIVNANEIETAIRCVMNK-DNNVVRKRVMDISQMIQRATKNGGSSFAAIEKFIHDVI 464 (468)
T ss_pred EecccccccCCcccHHHHHHHHHHHHhc-chHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 62 1 35999999999999973 23799999999999999999999999999999999886
No 12
>PLN02152 indole-3-acetate beta-glucosyltransferase
Probab=100.00 E-value=4e-56 Score=429.30 Aligned_cols=407 Identities=26% Similarity=0.467 Sum_probs=316.6
Q ss_pred ceEEEEcCCCccChHHHHHHHHHHHh-CCCeEEEEeCCCC-CCC-C---CCCCCceEEeCCCCCCCCcc-ccccHHHHHH
Q 046167 9 RRVVLVPSPHQGHINPMLQLGTILHS-KGFSITVVHTQFN-SPN-P---SNHPEFEFQSIPDGLMDVNI-SARNLVDSIL 81 (424)
Q Consensus 9 ~ril~~~~~~~GH~~p~~~la~~L~~-~Gh~V~~~~~~~~-~~~-~---~~~~g~~~~~~~~~~~~~~~-~~~~~~~~~~ 81 (424)
.||+++|+++.||++|++.||+.|+. +|+.|||++++.+ ... . ...++++++.++++++.+.. ...+....+.
T Consensus 4 ~hvv~~P~p~qGHi~P~l~La~~La~~~G~~vT~v~t~~~~~~~~~~~~~~~~~i~~~~i~dglp~g~~~~~~~~~~~~~ 83 (455)
T PLN02152 4 PHFLLVTFPAQGHVNPSLRFARRLIKTTGTRVTFATCLSVIHRSMIPNHNNVENLSFLTFSDGFDDGVISNTDDVQNRLV 83 (455)
T ss_pred cEEEEecCcccccHHHHHHHHHHHhhCCCcEEEEEeccchhhhhhhccCCCCCCEEEEEcCCCCCCccccccccHHHHHH
Confidence 49999999999999999999999996 7999999999743 111 1 11136999999988876532 2334555666
Q ss_pred HHHHhchhHHHHHHHHHHhhcCCCCCceEEEecCccchHHHHHHHhCCceEEEecchHHHHHHHHhhhccc-----ccCC
Q 046167 82 LLNENCREPFRNWLVQMIKEQQPGDEIVCIIYDEVMYFAEASASQLNVQSIILRTSGAVTVVARLVLFQLK-----EEGY 156 (424)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~pDlvi~d~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~-----~~~~ 156 (424)
.+...+...+.++++++.... . ++++||+|.+..|+..+|+++|||++.+++.+++....+++..... -++.
T Consensus 84 ~~~~~~~~~l~~~l~~l~~~~-~--pv~ciV~D~~~~wa~dvA~~lgIP~~~f~t~~a~~~~~~~~~~~~~~~~~~iPgl 160 (455)
T PLN02152 84 NFERNGDKALSDFIEANLNGD-S--PVTCLIYTILPNWAPKVARRFHLPSVLLWIQPAFVFDIYYNYSTGNNSVFEFPNL 160 (455)
T ss_pred HHHHhccHHHHHHHHHhhccC-C--CceEEEECCccHhHHHHHHHhCCCEEEEECccHHHHHHHHHhhccCCCeeecCCC
Confidence 666677888888887764221 1 4599999999999999999999999999999998877765442111 1121
Q ss_pred CCCC-------------hh-HHHHHHH-hhhcc--CCceEEecChhhhhHHHHHHHHhccCCCeeeecccccCCC--CCC
Q 046167 157 NPLK-------------ES-YVQLINN-AYSAR--TSSAVISNTIYCLEESVLSQLQQYFKVPNFPIGPLHKFAP--SSN 217 (424)
Q Consensus 157 ~p~~-------------~~-~~~~~~~-~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vGp~~~~~~--~~~ 217 (424)
.+.. +. ..+.+.+ .+... .++++++|||+++|+..++.+.. .+++.|||+..... ...
T Consensus 161 p~l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~l~~---~~v~~VGPL~~~~~~~~~~ 237 (455)
T PLN02152 161 PSLEIRDLPSFLSPSNTNKAAQAVYQELMEFLKEESNPKILVNTFDSLEPEFLTAIPN---IEMVAVGPLLPAEIFTGSE 237 (455)
T ss_pred CCCchHHCchhhcCCCCchhHHHHHHHHHHHhhhccCCEEEEeChHHhhHHHHHhhhc---CCEEEEcccCccccccccc
Confidence 1111 00 1233333 33222 35699999999999999988865 37999999975321 000
Q ss_pred -CC---CcccccccccccccCCCCeEEEEEeCCcccCCHHHHHHHHHHHHhCCCCeEEEEcCCCCCC----Ccc--cccC
Q 046167 218 -GS---LLKEDTSCISWLNNQSPKSVIYVSLGSVASMDKKELEEMAWGLVNSKQPFLWVIRPRTNNA----PEG--IELL 287 (424)
Q Consensus 218 -~~---~~~~~~~l~~~l~~~~~~~~I~vs~Gs~~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~~~~----~~~--~~~l 287 (424)
.. .++.+.++.+||+.++++++|||||||....+.+++++++.+|+.++++|||+++.+.... .+. .-.+
T Consensus 238 ~~~~~~~~~~~~~~~~wLd~~~~~sVvyvsfGS~~~l~~~q~~ela~gL~~s~~~flWv~r~~~~~~~~~~~~~~~~~~~ 317 (455)
T PLN02152 238 SGKDLSVRDQSSSYTLWLDSKTESSVIYVSFGTMVELSKKQIEELARALIEGKRPFLWVITDKLNREAKIEGEEETEIEK 317 (455)
T ss_pred cCccccccccchHHHHHhhCCCCCceEEEEecccccCCHHHHHHHHHHHHHcCCCeEEEEecCccccccccccccccccc
Confidence 01 1223446999999888889999999999999999999999999999999999998632110 000 0124
Q ss_pred chhHHHHhcCCCceeeecchhhhhccccccccccccchhhHHHhhhcCCceeecCcccchhhHHHHHHhhhhcceecC--
Q 046167 288 PKVLAEDVQENGYIVKWAPQKEVLSHVAVGGFWSHCGWNSTLESICEGVPMICMPFFEDQKVNARYLSHVWGVGLELE-- 365 (424)
Q Consensus 288 ~~~~~~~~~~nv~v~~~ip~~~ll~~~~~~~~i~hgG~~t~~eal~~GvP~v~~P~~~DQ~~na~~~~~~~G~g~~~~-- 365 (424)
++++.|+.++|+++.+|+||.+||+|+++++||||||+||++||+++|||+|++|+++||+.||+++++.+|+|+.+.
T Consensus 318 ~~~f~e~~~~~g~v~~W~PQ~~iL~h~~vg~fvtH~G~nS~~Ea~~~GvP~l~~P~~~DQ~~na~~~~~~~~~G~~~~~~ 397 (455)
T PLN02152 318 IAGFRHELEEVGMIVSWCSQIEVLRHRAVGCFVTHCGWSSSLESLVLGVPVVAFPMWSDQPANAKLLEEIWKTGVRVREN 397 (455)
T ss_pred chhHHHhccCCeEEEeeCCHHHHhCCcccceEEeeCCcccHHHHHHcCCCEEeccccccchHHHHHHHHHhCceEEeecC
Confidence 788988999999999999999999999999999999999999999999999999999999999999988557776664
Q ss_pred c--ccchHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHh
Q 046167 366 H--ELERGAVEKAVRKLTVDKEGEFLRQRAAQLKEEVELSTRKGGFSYNSLNELLDLIN 422 (424)
Q Consensus 366 ~--~~~~~~L~~ai~~ll~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~a~~~~~~~~~ 422 (424)
. ..+.++|+++|+++|+|+ +..+|+||++++++.+++..+||++++.++++++.+.
T Consensus 398 ~~~~~~~e~l~~av~~vm~~~-~~~~r~~a~~~~~~~~~a~~~ggsS~~nl~~li~~i~ 455 (455)
T PLN02152 398 SEGLVERGEIRRCLEAVMEEK-SVELRESAEKWKRLAIEAGGEGGSSDKNVEAFVKTLC 455 (455)
T ss_pred cCCcCcHHHHHHHHHHHHhhh-HHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHhC
Confidence 2 369999999999999753 3569999999999999999999999999999999873
No 13
>PLN02764 glycosyltransferase family protein
Probab=100.00 E-value=3.1e-56 Score=427.96 Aligned_cols=402 Identities=22% Similarity=0.374 Sum_probs=310.0
Q ss_pred cCCCCceEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCCCCCCCCCC---CC-C--ceEEeCC--CCCCCCcccccc
Q 046167 4 QGQRRRRVVLVPSPHQGHINPMLQLGTILHSKGFSITVVHTQFNSPNPSN---HP-E--FEFQSIP--DGLMDVNISARN 75 (424)
Q Consensus 4 m~~~~~ril~~~~~~~GH~~p~~~la~~L~~~Gh~V~~~~~~~~~~~~~~---~~-g--~~~~~~~--~~~~~~~~~~~~ 75 (424)
|.+.++||+++|+++.||++|++.||+.|+.+|+.||+++++.+...... .+ + +.+..+| ++++.+.....+
T Consensus 1 ~~~~~~Hvvl~P~paqGHi~P~l~LAk~La~~g~~vT~~tt~~~~~~~~~~~~~~~~~~v~~~~~p~~~glp~g~e~~~~ 80 (453)
T PLN02764 1 MGGLKFHVLMYPWFATGHMTPFLFLANKLAEKGHTVTFLLPKKALKQLEHLNLFPHNIVFRSVTVPHVDGLPVGTETVSE 80 (453)
T ss_pred CCCCCcEEEEECCcccccHHHHHHHHHHHHhCCCEEEEEeCcchhhhhcccccCCCCceEEEEECCCcCCCCCccccccc
Confidence 55667999999999999999999999999999999999999865432111 11 2 6777777 677655322111
Q ss_pred H----HHHHHHHHHhchhHHHHHHHHHHhhcCCCCCceEEEecCccchHHHHHHHhCCceEEEecchHHHHHHHHhhhc-
Q 046167 76 L----VDSILLLNENCREPFRNWLVQMIKEQQPGDEIVCIIYDEVMYFAEASASQLNVQSIILRTSGAVTVVARLVLFQ- 150 (424)
Q Consensus 76 ~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pDlvi~d~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~- 150 (424)
. ...+......+...+.++++.. +||+||+|+ ..|+..+|+++|||++.+++.++...+.+.. +.
T Consensus 81 ~~~~~~~~~~~a~~~~~~~~~~~l~~~--------~~~~iV~D~-~~w~~~vA~~~gIP~~~f~~~~a~~~~~~~~-~~~ 150 (453)
T PLN02764 81 IPVTSADLLMSAMDLTRDQVEVVVRAV--------EPDLIFFDF-AHWIPEVARDFGLKTVKYVVVSASTIASMLV-PGG 150 (453)
T ss_pred CChhHHHHHHHHHHHhHHHHHHHHHhC--------CCCEEEECC-chhHHHHHHHhCCCEEEEEcHHHHHHHHHhc-ccc
Confidence 1 1122222234455555565554 789999995 8899999999999999999999887776542 11
Q ss_pred c---cccCCCC----CCh----------------hHHHHHHH-hhhccCCceEEecChhhhhHHHHHHHHhccCCCeeee
Q 046167 151 L---KEEGYNP----LKE----------------SYVQLINN-AYSARTSSAVISNTIYCLEESVLSQLQQYFKVPNFPI 206 (424)
Q Consensus 151 ~---~~~~~~p----~~~----------------~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v 206 (424)
. ..+++.. .+. .....+.+ ......++++++|||+++|+.+++++....+++++.|
T Consensus 151 ~~~~~~pglp~~~v~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~vlvNTf~eLE~~~~~~~~~~~~~~v~~V 230 (453)
T PLN02764 151 ELGVPPPGYPSSKVLLRKQDAYTMKNLEPTNTIDVGPNLLERVTTSLMNSDVIAIRTAREIEGNFCDYIEKHCRKKVLLT 230 (453)
T ss_pred cCCCCCCCCCCCcccCcHhhCcchhhcCCCccchhHHHHHHHHHHhhccCCEEEEeccHHhhHHHHHHHHhhcCCcEEEe
Confidence 0 0011110 000 01122222 2446678899999999999999999977545689999
Q ss_pred cccccCCCCCCCCCcccccccccccccCCCCeEEEEEeCCcccCCHHHHHHHHHHHHhCCCCeEEEEcCCCCCCCccccc
Q 046167 207 GPLHKFAPSSNGSLLKEDTSCISWLNNQSPKSVIYVSLGSVASMDKKELEEMAWGLVNSKQPFLWVIRPRTNNAPEGIEL 286 (424)
Q Consensus 207 Gp~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~I~vs~Gs~~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~ 286 (424)
||++..... ....+.++.+|||.++++++|||||||....+.+++.+++.+|+..+.+++|+++.+...+.. ...
T Consensus 231 GPL~~~~~~----~~~~~~~cl~WLD~q~~~sVvyvsfGS~~~~~~~q~~ela~gL~~s~~pflwv~r~~~~~~~~-~~~ 305 (453)
T PLN02764 231 GPVFPEPDK----TRELEERWVKWLSGYEPDSVVFCALGSQVILEKDQFQELCLGMELTGSPFLVAVKPPRGSSTI-QEA 305 (453)
T ss_pred ccCccCccc----cccchhHHHHHHhCCCCCceEEEeecccccCCHHHHHHHHHHHHhCCCCeEEEEeCCCCCcch-hhh
Confidence 999753211 111235689999999999999999999988899999999999999999999999854211111 245
Q ss_pred CchhHHHHhcCCCcee-eecchhhhhccccccccccccchhhHHHhhhcCCceeecCcccchhhHHHHHHhhhhcceecC
Q 046167 287 LPKVLAEDVQENGYIV-KWAPQKEVLSHVAVGGFWSHCGWNSTLESICEGVPMICMPFFEDQKVNARYLSHVWGVGLELE 365 (424)
Q Consensus 287 l~~~~~~~~~~nv~v~-~~ip~~~ll~~~~~~~~i~hgG~~t~~eal~~GvP~v~~P~~~DQ~~na~~~~~~~G~g~~~~ 365 (424)
+|++|.++..++..++ +|+||.+||+|+++++||||||+||++||+++|||+|++|+++||+.||+++++.+|+|+.+.
T Consensus 306 lp~~f~~r~~grG~v~~~W~PQ~~vL~h~~v~~FvtH~G~nS~~Eal~~GVP~l~~P~~~DQ~~na~~l~~~~g~gv~~~ 385 (453)
T PLN02764 306 LPEGFEERVKGRGVVWGGWVQQPLILSHPSVGCFVSHCGFGSMWESLLSDCQIVLVPQLGDQVLNTRLLSDELKVSVEVA 385 (453)
T ss_pred CCcchHhhhccCCcEEeCCCCHHHHhcCcccCeEEecCCchHHHHHHHcCCCEEeCCcccchHHHHHHHHHHhceEEEec
Confidence 8999999988777666 999999999999999999999999999999999999999999999999999965489999874
Q ss_pred c----ccchHHHHHHHHHHhccc--chHHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHhcC
Q 046167 366 H----ELERGAVEKAVRKLTVDK--EGEFLRQRAAQLKEEVELSTRKGGFSYNSLNELLDLINKF 424 (424)
Q Consensus 366 ~----~~~~~~L~~ai~~ll~~~--~~~~~~~~a~~l~~~~~~~~~~~g~~~~a~~~~~~~~~~~ 424 (424)
. .++.++|.++|+++|+++ +++.+|++++++++++++. |++++.+++|++.+.++
T Consensus 386 ~~~~~~~~~e~i~~av~~vm~~~~~~g~~~r~~a~~~~~~~~~~----GSS~~~l~~lv~~~~~~ 446 (453)
T PLN02764 386 REETGWFSKESLRDAINSVMKRDSEIGNLVKKNHTKWRETLASP----GLLTGYVDNFIESLQDL 446 (453)
T ss_pred cccCCccCHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhc----CCHHHHHHHHHHHHHHh
Confidence 3 379999999999999874 3677999999999999765 99999999999998753
No 14
>PLN02554 UDP-glycosyltransferase family protein
Probab=100.00 E-value=6.5e-56 Score=435.20 Aligned_cols=405 Identities=26% Similarity=0.460 Sum_probs=310.1
Q ss_pred ceEEEEcCCCccChHHHHHHHHHHHhCC--CeEEEEeCCCCCCC-------C---CC--CCCceEEeCCCCCCCCccccc
Q 046167 9 RRVVLVPSPHQGHINPMLQLGTILHSKG--FSITVVHTQFNSPN-------P---SN--HPEFEFQSIPDGLMDVNISAR 74 (424)
Q Consensus 9 ~ril~~~~~~~GH~~p~~~la~~L~~~G--h~V~~~~~~~~~~~-------~---~~--~~g~~~~~~~~~~~~~~~~~~ 74 (424)
+||+++|+++.||++|++.||+.|+.+| ..|||++++.+... . .. .++++++.+|.+.+.... ..
T Consensus 3 ~hvvl~P~paqGHi~P~l~LAk~La~~G~~~~vT~v~t~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~~~~-~~ 81 (481)
T PLN02554 3 IELVFIPSPGIGHLRPTVELAKLLVDSDDRLSITVIIIPSRSGDDASSSAYIASLSASSEDRLRYEVISAGDQPTTE-DP 81 (481)
T ss_pred eEEEEeCCcchhhHHHHHHHHHHHHhCCCCEEEEEEeCCCccchhhhhhhhhhhcccCCCCCeEEEEcCCCCCCccc-ch
Confidence 5999999999999999999999999998 88999999755321 0 00 236999999976542211 11
Q ss_pred cHHHHHHHHHHhchhHHHHHHHHHHhhc--CCCCCc-eEEEecCccchHHHHHHHhCCceEEEecchHHHHHHHHhhhcc
Q 046167 75 NLVDSILLLNENCREPFRNWLVQMIKEQ--QPGDEI-VCIIYDEVMYFAEASASQLNVQSIILRTSGAVTVVARLVLFQL 151 (424)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~p-Dlvi~d~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~ 151 (424)
.+..+...+...+++.++++.... ... +| ++||+|.+..|+..+|+++|||++.++++++..++.+.+.+..
T Consensus 82 ----~~~~~~~~~~~~~~~~l~~l~~~~~~~~~-~pv~cvV~D~f~~wa~dvA~~lgIP~~~F~t~sa~~~~~~~~~~~~ 156 (481)
T PLN02554 82 ----TFQSYIDNQKPKVRDAVAKLVDDSSTPSS-PRLAGFVVDMFCTSMIDVANEFGVPSYMFYTSNATFLGLQLHVQML 156 (481)
T ss_pred ----HHHHHHHHHHHHHHHHHHHHHhhhccCCC-CCeEEEEECCcchhHHHHHHHhCCCEEEEeCCcHHHHHHHHhhhhh
Confidence 222223344555555555553210 000 33 8999999999999999999999999999999888776554311
Q ss_pred c------------------ccCCC-CCChh----------HHHHHHH-hhhccCCceEEecChhhhhHHHHHHHHhc--c
Q 046167 152 K------------------EEGYN-PLKES----------YVQLINN-AYSARTSSAVISNTIYCLEESVLSQLQQY--F 199 (424)
Q Consensus 152 ~------------------~~~~~-p~~~~----------~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~ 199 (424)
. -++.. |.+.. ....+.+ ......++++++|++.+++......+.+. .
T Consensus 157 ~~~~~~~~~~~~~~~~~v~iPgl~~pl~~~dlp~~~~~~~~~~~~~~~~~~~~~~~gvlvNt~~eLe~~~~~~l~~~~~~ 236 (481)
T PLN02554 157 YDEKKYDVSELEDSEVELDVPSLTRPYPVKCLPSVLLSKEWLPLFLAQARRFREMKGILVNTVAELEPQALKFFSGSSGD 236 (481)
T ss_pred ccccccCccccCCCCceeECCCCCCCCCHHHCCCcccCHHHHHHHHHHHHhcccCCEEEEechHHHhHHHHHHHHhcccC
Confidence 0 01110 11111 1233334 55567789999999999999988887653 2
Q ss_pred CCCeeeecccccCCCCCCCCCcccccccccccccCCCCeEEEEEeCCcccCCHHHHHHHHHHHHhCCCCeEEEEcCCCC-
Q 046167 200 KVPNFPIGPLHKFAPSSNGSLLKEDTSCISWLNNQSPKSVIYVSLGSVASMDKKELEEMAWGLVNSKQPFLWVIRPRTN- 278 (424)
Q Consensus 200 ~~~~~~vGp~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~I~vs~Gs~~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~~- 278 (424)
.+++++|||++...+.......+.+.++.+|++.++++++|||||||....+.+++..++.+++.+++++||+++....
T Consensus 237 ~~~v~~vGpl~~~~~~~~~~~~~~~~~~~~wLd~~~~~svvyvsfGS~~~~~~~~~~~la~~l~~~~~~flW~~~~~~~~ 316 (481)
T PLN02554 237 LPPVYPVGPVLHLENSGDDSKDEKQSEILRWLDEQPPKSVVFLCFGSMGGFSEEQAREIAIALERSGHRFLWSLRRASPN 316 (481)
T ss_pred CCCEEEeCCCccccccccccccccchHHHHHHhcCCCCcEEEEeccccccCCHHHHHHHHHHHHHcCCCeEEEEcCCccc
Confidence 2679999999432211010011233469999998888899999999998888999999999999999999999975321
Q ss_pred -----CCC-cc-cccCchhHHHHhcCCCceeeecchhhhhccccccccccccchhhHHHhhhcCCceeecCcccchhhHH
Q 046167 279 -----NAP-EG-IELLPKVLAEDVQENGYIVKWAPQKEVLSHVAVGGFWSHCGWNSTLESICEGVPMICMPFFEDQKVNA 351 (424)
Q Consensus 279 -----~~~-~~-~~~l~~~~~~~~~~nv~v~~~ip~~~ll~~~~~~~~i~hgG~~t~~eal~~GvP~v~~P~~~DQ~~na 351 (424)
.+. .. .+.+|++|.++..+|+++++|+||.+||.|+++++||||||+||++||+++|||||++|+++||+.||
T Consensus 317 ~~~~~~~~~~~~~~~lp~~~~~r~~~~g~v~~W~PQ~~iL~H~~v~~FvtH~G~nS~~Ea~~~GVP~l~~P~~~DQ~~Na 396 (481)
T PLN02554 317 IMKEPPGEFTNLEEILPEGFLDRTKDIGKVIGWAPQVAVLAKPAIGGFVTHCGWNSILESLWFGVPMAAWPLYAEQKFNA 396 (481)
T ss_pred ccccccccccchhhhCChHHHHHhccCceEEeeCCHHHHhCCcccCcccccCccchHHHHHHcCCCEEecCccccchhhH
Confidence 000 00 12368999999999999999999999999999999999999999999999999999999999999999
Q ss_pred H-HHHhhhhcceecC------------cccchHHHHHHHHHHhc-ccchHHHHHHHHHHHHHHHHHhhcCCCcHHHHHHH
Q 046167 352 R-YLSHVWGVGLELE------------HELERGAVEKAVRKLTV-DKEGEFLRQRAAQLKEEVELSTRKGGFSYNSLNEL 417 (424)
Q Consensus 352 ~-~~~~~~G~g~~~~------------~~~~~~~L~~ai~~ll~-~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~a~~~~ 417 (424)
+ ++++ +|+|+.+. ..++.++|.++|+++|. | +.||+||+++++.+++++.+||+++.++++|
T Consensus 397 ~~~v~~-~g~Gv~l~~~~~~~~~~~~~~~~~~e~l~~av~~vm~~~---~~~r~~a~~l~~~~~~av~~gGss~~~l~~l 472 (481)
T PLN02554 397 FEMVEE-LGLAVEIRKYWRGDLLAGEMETVTAEEIERGIRCLMEQD---SDVRKRVKEMSEKCHVALMDGGSSHTALKKF 472 (481)
T ss_pred HHHHHH-hCceEEeeccccccccccccCeEcHHHHHHHHHHHhcCC---HHHHHHHHHHHHHHHHHhcCCChHHHHHHHH
Confidence 5 5777 89999985 15799999999999997 5 7999999999999999999999999999999
Q ss_pred HHHHhc
Q 046167 418 LDLINK 423 (424)
Q Consensus 418 ~~~~~~ 423 (424)
++.+.+
T Consensus 473 v~~~~~ 478 (481)
T PLN02554 473 IQDVTK 478 (481)
T ss_pred HHHHHh
Confidence 999874
No 15
>PLN00414 glycosyltransferase family protein
Probab=100.00 E-value=4.3e-56 Score=429.86 Aligned_cols=404 Identities=20% Similarity=0.311 Sum_probs=300.9
Q ss_pred CceEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCCCCCCCCC----CCCCceEEeCC----CCCCCCccccccHHHH
Q 046167 8 RRRVVLVPSPHQGHINPMLQLGTILHSKGFSITVVHTQFNSPNPS----NHPEFEFQSIP----DGLMDVNISARNLVDS 79 (424)
Q Consensus 8 ~~ril~~~~~~~GH~~p~~~la~~L~~~Gh~V~~~~~~~~~~~~~----~~~g~~~~~~~----~~~~~~~~~~~~~~~~ 79 (424)
+.||+++|+++.||++|++.||+.|+.+|++|||++++.+..... ...++.|..++ ++++.+.....+....
T Consensus 4 ~~HVvlvPfpaqGHi~PmL~LAk~Las~G~~VT~vtt~~~~~~i~~~~~~~~~i~~~~i~lP~~dGLP~g~e~~~~l~~~ 83 (446)
T PLN00414 4 KFHAFMYPWFGFGHMIPYLHLANKLAEKGHRVTFFLPKKAHKQLQPLNLFPDSIVFEPLTLPPVDGLPFGAETASDLPNS 83 (446)
T ss_pred CCEEEEecCcccchHHHHHHHHHHHHhCCCEEEEEeCCchhhhhcccccCCCceEEEEecCCCcCCCCCcccccccchhh
Confidence 379999999999999999999999999999999999975433211 11247775443 5666553222222111
Q ss_pred HHHHHHhchhHHHHHHHHHHhhcCCCCCceEEEecCccchHHHHHHHhCCceEEEecchHHHHHHHHhhhcc---cccCC
Q 046167 80 ILLLNENCREPFRNWLVQMIKEQQPGDEIVCIIYDEVMYFAEASASQLNVQSIILRTSGAVTVVARLVLFQL---KEEGY 156 (424)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~pDlvi~d~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~---~~~~~ 156 (424)
...........+...++.+.+.. +||+||+|. ..|+..+|+++|||++.+++.+....+.+.+.... ..+++
T Consensus 84 ~~~~~~~a~~~l~~~l~~~L~~~----~p~cVV~D~-~~wa~~vA~~lgIP~~~F~~~~a~~~~~~~~~~~~~~~~~pg~ 158 (446)
T PLN00414 84 TKKPIFDAMDLLRDQIEAKVRAL----KPDLIFFDF-VHWVPEMAKEFGIKSVNYQIISAACVAMVLAPRAELGFPPPDY 158 (446)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcC----CCeEEEECC-chhHHHHHHHhCCCEEEEecHHHHHHHHHhCcHhhcCCCCCCC
Confidence 11111111122333333332221 799999995 88999999999999999999998877765431110 00111
Q ss_pred CC----CC--h----h----HHHHHHH-hhhccCCceEEecChhhhhHHHHHHHHhccCCCeeeecccccCCCCCCCCCc
Q 046167 157 NP----LK--E----S----YVQLINN-AYSARTSSAVISNTIYCLEESVLSQLQQYFKVPNFPIGPLHKFAPSSNGSLL 221 (424)
Q Consensus 157 ~p----~~--~----~----~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vGp~~~~~~~~~~~~~ 221 (424)
.. .. + . ....+.+ ......++++++|||.++|+.+++.+...++++++.|||+...... ....
T Consensus 159 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~~~~~~~~~v~~VGPl~~~~~~--~~~~ 236 (446)
T PLN00414 159 PLSKVALRGHDANVCSLFANSHELFGLITKGLKNCDVVSIRTCVELEGNLCDFIERQCQRKVLLTGPMLPEPQN--KSGK 236 (446)
T ss_pred CCCcCcCchhhcccchhhcccHHHHHHHHHhhccCCEEEEechHHHHHHHHHHHHHhcCCCeEEEcccCCCccc--ccCc
Confidence 10 11 0 1 0123333 4556778999999999999999998887666689999999754211 1011
Q ss_pred ccccccccccccCCCCeEEEEEeCCcccCCHHHHHHHHHHHHhCCCCeEEEEcCCCCCCCcccccCchhHHHHhcCCCce
Q 046167 222 KEDTSCISWLNNQSPKSVIYVSLGSVASMDKKELEEMAWGLVNSKQPFLWVIRPRTNNAPEGIELLPKVLAEDVQENGYI 301 (424)
Q Consensus 222 ~~~~~l~~~l~~~~~~~~I~vs~Gs~~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~nv~v 301 (424)
..++.+.+|||.++++++|||||||....+.+++.+++.+|+.++.+|+|+++.+...+. ..+.+|++|.++..++..+
T Consensus 237 ~~~~~~~~WLD~q~~~sVvyvsfGS~~~~~~~q~~e~a~gL~~s~~~Flwvvr~~~~~~~-~~~~lp~~f~~r~~~~g~v 315 (446)
T PLN00414 237 PLEDRWNHWLNGFEPGSVVFCAFGTQFFFEKDQFQEFCLGMELTGLPFLIAVMPPKGSST-VQEALPEGFEERVKGRGIV 315 (446)
T ss_pred ccHHHHHHHHhcCCCCceEEEeecccccCCHHHHHHHHHHHHHcCCCeEEEEecCCCccc-chhhCChhHHHHhcCCCeE
Confidence 123458899999999999999999999989999999999999999999999986422111 1246899999999988887
Q ss_pred e-eecchhhhhccccccccccccchhhHHHhhhcCCceeecCcccchhhHHHHHHhhhhcceecCc----ccchHHHHHH
Q 046167 302 V-KWAPQKEVLSHVAVGGFWSHCGWNSTLESICEGVPMICMPFFEDQKVNARYLSHVWGVGLELEH----ELERGAVEKA 376 (424)
Q Consensus 302 ~-~~ip~~~ll~~~~~~~~i~hgG~~t~~eal~~GvP~v~~P~~~DQ~~na~~~~~~~G~g~~~~~----~~~~~~L~~a 376 (424)
+ +|+||.+||+|+++++||||||+||++||+++|||+|++|+++||+.||+++++.+|+|+.+.. .+++++|+++
T Consensus 316 v~~w~PQ~~vL~h~~v~~fvtH~G~nS~~Ea~~~GvP~l~~P~~~dQ~~na~~~~~~~g~g~~~~~~~~~~~~~~~i~~~ 395 (446)
T PLN00414 316 WEGWVEQPLILSHPSVGCFVNHCGFGSMWESLVSDCQIVFIPQLADQVLITRLLTEELEVSVKVQREDSGWFSKESLRDT 395 (446)
T ss_pred EeccCCHHHHhcCCccceEEecCchhHHHHHHHcCCCEEecCcccchHHHHHHHHHHhCeEEEeccccCCccCHHHHHHH
Confidence 7 9999999999999999999999999999999999999999999999999999644899999964 3899999999
Q ss_pred HHHHhccc--chHHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHhc
Q 046167 377 VRKLTVDK--EGEFLRQRAAQLKEEVELSTRKGGFSYNSLNELLDLINK 423 (424)
Q Consensus 377 i~~ll~~~--~~~~~~~~a~~l~~~~~~~~~~~g~~~~a~~~~~~~~~~ 423 (424)
++++|.++ +++.+|++++++++.+.+. ||+...++++++.+.+
T Consensus 396 v~~~m~~~~e~g~~~r~~a~~~~~~~~~~----gg~ss~l~~~v~~~~~ 440 (446)
T PLN00414 396 VKSVMDKDSEIGNLVKRNHKKLKETLVSP----GLLSGYADKFVEALEN 440 (446)
T ss_pred HHHHhcCChhhHHHHHHHHHHHHHHHHcC----CCcHHHHHHHHHHHHH
Confidence 99999764 2577999999999998554 5534558999998865
No 16
>PLN02208 glycosyltransferase family protein
Probab=100.00 E-value=1e-55 Score=426.67 Aligned_cols=398 Identities=19% Similarity=0.333 Sum_probs=300.7
Q ss_pred CceEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCCCCCCCCCC----CCCceEEeC--C--CCCCCCccccccHHHH
Q 046167 8 RRRVVLVPSPHQGHINPMLQLGTILHSKGFSITVVHTQFNSPNPSN----HPEFEFQSI--P--DGLMDVNISARNLVDS 79 (424)
Q Consensus 8 ~~ril~~~~~~~GH~~p~~~la~~L~~~Gh~V~~~~~~~~~~~~~~----~~g~~~~~~--~--~~~~~~~~~~~~~~~~ 79 (424)
+.||+++|+++.||++|++.||+.|+.+||+|||+++......... ..++.+..+ + ++++.+.....+....
T Consensus 4 ~~hvv~~P~paqGHi~P~l~LAk~La~~G~~VT~vtt~~~~~~i~~~~a~~~~i~~~~l~~p~~dgLp~g~~~~~~l~~~ 83 (442)
T PLN02208 4 KFHAFMFPWFAFGHMIPFLHLANKLAEKGHRVTFLLPKKAQKQLEHHNLFPDSIVFHPLTIPPVNGLPAGAETTSDIPIS 83 (442)
T ss_pred CCEEEEecCccccHHHHHHHHHHHHHhCCCEEEEEeccchhhhhhcccCCCCceEEEEeCCCCccCCCCCcccccchhHH
Confidence 4799999999999999999999999999999999998744332111 124555554 3 4565543322222222
Q ss_pred ----HHHHHHhchhHHHHHHHHHHhhcCCCCCceEEEecCccchHHHHHHHhCCceEEEecchHHHHHHHHhhhccc---
Q 046167 80 ----ILLLNENCREPFRNWLVQMIKEQQPGDEIVCIIYDEVMYFAEASASQLNVQSIILRTSGAVTVVARLVLFQLK--- 152 (424)
Q Consensus 80 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~pDlvi~d~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~--- 152 (424)
+......+...++++++.+ ++|+||+| +..|+..+|+++|||++.++++++.... +.+.+...
T Consensus 84 l~~~~~~~~~~~~~~l~~~L~~~--------~~~cVV~D-~~~wa~~vA~e~giP~~~f~~~~a~~~~-~~~~~~~~~~~ 153 (442)
T PLN02208 84 MDNLLSEALDLTRDQVEAAVRAL--------RPDLIFFD-FAQWIPEMAKEHMIKSVSYIIVSATTIA-HTHVPGGKLGV 153 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhC--------CCeEEEEC-CcHhHHHHHHHhCCCEEEEEhhhHHHHH-HHccCccccCC
Confidence 2222233444444444443 79999999 5789999999999999999999887654 43332100
Q ss_pred -ccCCCCC----Ch----------hHHHHHHH--hhhccCCceEEecChhhhhHHHHHHHHhccCCCeeeecccccCCCC
Q 046167 153 -EEGYNPL----KE----------SYVQLINN--AYSARTSSAVISNTIYCLEESVLSQLQQYFKVPNFPIGPLHKFAPS 215 (424)
Q Consensus 153 -~~~~~p~----~~----------~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vGp~~~~~~~ 215 (424)
.+++.+. +. ..+..+.+ ......++++++|||+++|+.+++++.+.+++++++|||++.....
T Consensus 154 ~~pglp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~Ntf~eLE~~~~~~~~~~~~~~v~~vGpl~~~~~~ 233 (442)
T PLN02208 154 PPPGYPSSKVLFRENDAHALATLSIFYKRLYHQITTGLKSCDVIALRTCKEIEGKFCDYISRQYHKKVLLTGPMFPEPDT 233 (442)
T ss_pred CCCCCCCcccccCHHHcCcccccchHHHHHHHHHHhhhccCCEEEEECHHHHHHHHHHHHHhhcCCCEEEEeecccCcCC
Confidence 1222110 11 11222222 2345678999999999999999999987776789999999864221
Q ss_pred CCCCCcccccccccccccCCCCeEEEEEeCCcccCCHHHHHHHHHHHHhCCCCeEEEEcCCCCCCCcccccCchhHHHHh
Q 046167 216 SNGSLLKEDTSCISWLNNQSPKSVIYVSLGSVASMDKKELEEMAWGLVNSKQPFLWVIRPRTNNAPEGIELLPKVLAEDV 295 (424)
Q Consensus 216 ~~~~~~~~~~~l~~~l~~~~~~~~I~vs~Gs~~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~ 295 (424)
..+.+.++.+||+.++++++|||||||....+.+++.+++.+++..+.+++|+++.+...+ .....+|++|.++.
T Consensus 234 ----~~~~~~~~~~wLd~~~~~sVvyvSfGS~~~l~~~q~~e~~~~l~~s~~pf~wv~r~~~~~~-~~~~~lp~~f~~r~ 308 (442)
T PLN02208 234 ----SKPLEEQWSHFLSGFPPKSVVFCSLGSQIILEKDQFQELCLGMELTGLPFLIAVKPPRGSS-TVQEGLPEGFEERV 308 (442)
T ss_pred ----CCCCHHHHHHHHhcCCCCcEEEEeccccccCCHHHHHHHHHHHHhCCCcEEEEEeCCCccc-chhhhCCHHHHHHH
Confidence 1123456999999888889999999999988899899988888778889999998542111 11245899999887
Q ss_pred cC-CCceeeecchhhhhccccccccccccchhhHHHhhhcCCceeecCcccchhhHHHHHHhhhhcceecCc-c---cch
Q 046167 296 QE-NGYIVKWAPQKEVLSHVAVGGFWSHCGWNSTLESICEGVPMICMPFFEDQKVNARYLSHVWGVGLELEH-E---LER 370 (424)
Q Consensus 296 ~~-nv~v~~~ip~~~ll~~~~~~~~i~hgG~~t~~eal~~GvP~v~~P~~~DQ~~na~~~~~~~G~g~~~~~-~---~~~ 370 (424)
.+ |+.+.+|+||.+||+|+++++||||||+||++||+++|||+|++|+++||+.||+++++.+|+|+.+.. + ++.
T Consensus 309 ~~~g~~v~~W~PQ~~iL~H~~v~~FvtHcG~nS~~Eai~~GVP~l~~P~~~DQ~~na~~~~~~~g~gv~~~~~~~~~~~~ 388 (442)
T PLN02208 309 KGRGVVWGGWVQQPLILDHPSIGCFVNHCGPGTIWESLVSDCQMVLIPFLSDQVLFTRLMTEEFEVSVEVSREKTGWFSK 388 (442)
T ss_pred hcCCcEeeccCCHHHHhcCCccCeEEccCCchHHHHHHHcCCCEEecCcchhhHHHHHHHHHHhceeEEeccccCCcCcH
Confidence 74 555569999999999999999999999999999999999999999999999999987765799999975 3 899
Q ss_pred HHHHHHHHHHhcccc--hHHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHhcC
Q 046167 371 GAVEKAVRKLTVDKE--GEFLRQRAAQLKEEVELSTRKGGFSYNSLNELLDLINKF 424 (424)
Q Consensus 371 ~~L~~ai~~ll~~~~--~~~~~~~a~~l~~~~~~~~~~~g~~~~a~~~~~~~~~~~ 424 (424)
++|.++|++++++++ ++.+|++++++++.+.+ +|++++.++++++.+.++
T Consensus 389 ~~l~~ai~~~m~~~~e~g~~~r~~~~~~~~~~~~----~gsS~~~l~~~v~~l~~~ 440 (442)
T PLN02208 389 ESLSNAIKSVMDKDSDLGKLVRSNHTKLKEILVS----PGLLTGYVDKFVEELQEY 440 (442)
T ss_pred HHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHhc----CCcHHHHHHHHHHHHHHh
Confidence 999999999998742 67899999999999854 489999999999998764
No 17
>PLN00164 glucosyltransferase; Provisional
Probab=100.00 E-value=2.5e-55 Score=429.46 Aligned_cols=405 Identities=30% Similarity=0.450 Sum_probs=315.1
Q ss_pred ceEEEEcCCCccChHHHHHHHHHHHhCC----CeEEEEeCCCCCC----C--------CCCCCCceEEeCCCCCCCCccc
Q 046167 9 RRVVLVPSPHQGHINPMLQLGTILHSKG----FSITVVHTQFNSP----N--------PSNHPEFEFQSIPDGLMDVNIS 72 (424)
Q Consensus 9 ~ril~~~~~~~GH~~p~~~la~~L~~~G----h~V~~~~~~~~~~----~--------~~~~~g~~~~~~~~~~~~~~~~ 72 (424)
.||+++|+++.||++|++.||+.|+.+| +.|||++++.+.. . .....++.+..+|.+.++..
T Consensus 4 ~HVVlvPfpaqGHi~P~l~LAk~La~~g~~~~~~vT~~~t~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~p~~-- 81 (480)
T PLN00164 4 PTVVLLPVWGSGHLMSMLEAGKRLLASSGGGALSLTVLVMPPPTPESASEVAAHVRREAASGLDIRFHHLPAVEPPTD-- 81 (480)
T ss_pred CEEEEeCCcchhHHHHHHHHHHHHHhCCCCCcEEEEEEEcCCCccchhHHHHHHHhhcccCCCCEEEEECCCCCCCCc--
Confidence 5999999999999999999999999997 7999999875422 0 00012589999996642211
Q ss_pred cccHHHHHHHHHHhchhHHHHHHHHHHhhcCCCCCceEEEecCccchHHHHHHHhCCceEEEecchHHHHHHHHhhhccc
Q 046167 73 ARNLVDSILLLNENCREPFRNWLVQMIKEQQPGDEIVCIIYDEVMYFAEASASQLNVQSIILRTSGAVTVVARLVLFQLK 152 (424)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pDlvi~d~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~ 152 (424)
..+....+..+...+...++++++.+. . ++++||+|.+..|+..+|+++|||++.+++++......+.+.+...
T Consensus 82 ~e~~~~~~~~~~~~~~~~l~~~L~~l~----~--pv~cIV~D~f~~Wa~dVA~elgIP~v~F~t~sA~~~~~~~~~~~~~ 155 (480)
T PLN00164 82 AAGVEEFISRYIQLHAPHVRAAIAGLS----C--PVAALVVDFFCTPLLDVARELAVPAYVYFTSTAAMLALMLRLPALD 155 (480)
T ss_pred cccHHHHHHHHHHhhhHHHHHHHHhcC----C--CceEEEECCcchhHHHHHHHhCCCEEEEECccHHHHHHHhhhhhhc
Confidence 123334455455566666777666551 1 4699999999999999999999999999999998877765543111
Q ss_pred ---------------ccCCCCCCh------------hHHHHHHH-hhhccCCceEEecChhhhhHHHHHHHHhcc-----
Q 046167 153 ---------------EEGYNPLKE------------SYVQLINN-AYSARTSSAVISNTIYCLEESVLSQLQQYF----- 199 (424)
Q Consensus 153 ---------------~~~~~p~~~------------~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~----- 199 (424)
-+++.+.+. .....+.. .+....++++++|||+++|+..++.+....
T Consensus 156 ~~~~~~~~~~~~~~~iPGlp~l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~~~~~~~~~~~ 235 (480)
T PLN00164 156 EEVAVEFEEMEGAVDVPGLPPVPASSLPAPVMDKKSPNYAWFVYHGRRFMEAAGIIVNTAAELEPGVLAAIADGRCTPGR 235 (480)
T ss_pred ccccCcccccCcceecCCCCCCChHHCCchhcCCCcHHHHHHHHHHHhhhhcCEEEEechHHhhHHHHHHHHhccccccC
Confidence 011111110 11233333 455677899999999999999999887642
Q ss_pred -CCCeeeecccccCCCCCCCCCcccccccccccccCCCCeEEEEEeCCcccCCHHHHHHHHHHHHhCCCCeEEEEcCCCC
Q 046167 200 -KVPNFPIGPLHKFAPSSNGSLLKEDTSCISWLNNQSPKSVIYVSLGSVASMDKKELEEMAWGLVNSKQPFLWVIRPRTN 278 (424)
Q Consensus 200 -~~~~~~vGp~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~I~vs~Gs~~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~~ 278 (424)
.++++.|||++..... ....+.++++.+||+.++++++|||||||....+.+++.+++.+++.++++|||+++....
T Consensus 236 ~~~~v~~vGPl~~~~~~--~~~~~~~~~~~~wLd~~~~~svvyvsfGS~~~~~~~q~~ela~gL~~s~~~flWv~~~~~~ 313 (480)
T PLN00164 236 PAPTVYPIGPVISLAFT--PPAEQPPHECVRWLDAQPPASVVFLCFGSMGFFDAPQVREIAAGLERSGHRFLWVLRGPPA 313 (480)
T ss_pred CCCceEEeCCCcccccc--CCCccchHHHHHHHHhCCCCceEEEEecccccCCHHHHHHHHHHHHHcCCCEEEEEcCCcc
Confidence 1579999999743211 1122345679999999888999999999998888999999999999999999999986432
Q ss_pred CC------CcccccCchhHHHHhcCCCcee-eecchhhhhccccccccccccchhhHHHhhhcCCceeecCcccchhhHH
Q 046167 279 NA------PEGIELLPKVLAEDVQENGYIV-KWAPQKEVLSHVAVGGFWSHCGWNSTLESICEGVPMICMPFFEDQKVNA 351 (424)
Q Consensus 279 ~~------~~~~~~l~~~~~~~~~~nv~v~-~~ip~~~ll~~~~~~~~i~hgG~~t~~eal~~GvP~v~~P~~~DQ~~na 351 (424)
.+ ....+.+|+++.++..++..++ +|+||.+||+|+++++||||||+||++||+++|||||++|+++||+.||
T Consensus 314 ~~~~~~~~~~~~~~lp~~~~~~~~~~g~~v~~w~PQ~~iL~h~~vg~fvtH~GwnS~~Eai~~GVP~l~~P~~~DQ~~Na 393 (480)
T PLN00164 314 AGSRHPTDADLDELLPEGFLERTKGRGLVWPTWAPQKEILAHAAVGGFVTHCGWNSVLESLWHGVPMAPWPLYAEQHLNA 393 (480)
T ss_pred cccccccccchhhhCChHHHHHhcCCCeEEeecCCHHHHhcCcccCeEEeecccchHHHHHHcCCCEEeCCccccchhHH
Confidence 11 0111348889988888777666 9999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhhcceecCc------ccchHHHHHHHHHHhccc--chHHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHhc
Q 046167 352 RYLSHVWGVGLELEH------ELERGAVEKAVRKLTVDK--EGEFLRQRAAQLKEEVELSTRKGGFSYNSLNELLDLINK 423 (424)
Q Consensus 352 ~~~~~~~G~g~~~~~------~~~~~~L~~ai~~ll~~~--~~~~~~~~a~~l~~~~~~~~~~~g~~~~a~~~~~~~~~~ 423 (424)
+++.+.+|+|+.+.. ..+.++|.++|+++|.++ +++.+|++|+++++++++++.+||++++.+++|++.+.+
T Consensus 394 ~~~~~~~gvG~~~~~~~~~~~~~~~e~l~~av~~vm~~~~~~~~~~r~~a~~~~~~~~~a~~~gGSS~~~l~~~v~~~~~ 473 (480)
T PLN00164 394 FELVADMGVAVAMKVDRKRDNFVEAAELERAVRSLMGGGEEEGRKAREKAAEMKAACRKAVEEGGSSYAALQRLAREIRH 473 (480)
T ss_pred HHHHHHhCeEEEeccccccCCcCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHh
Confidence 887543799999852 268999999999999764 367899999999999999999999999999999999864
No 18
>PLN02534 UDP-glycosyltransferase
Probab=100.00 E-value=1.3e-55 Score=428.97 Aligned_cols=410 Identities=29% Similarity=0.495 Sum_probs=307.7
Q ss_pred CceEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCCCCCCCCC------CC--CCceEEeCC-----CCCCCCccccc
Q 046167 8 RRRVVLVPSPHQGHINPMLQLGTILHSKGFSITVVHTQFNSPNPS------NH--PEFEFQSIP-----DGLMDVNISAR 74 (424)
Q Consensus 8 ~~ril~~~~~~~GH~~p~~~la~~L~~~Gh~V~~~~~~~~~~~~~------~~--~g~~~~~~~-----~~~~~~~~~~~ 74 (424)
+.|++++|+++.||++|++.||+.|+.+|+.|||++++.+..... .. ..++|+.+| ++++.+.....
T Consensus 8 ~~Hvv~vPfpaqGHi~P~l~LAk~La~~G~~vT~v~t~~n~~~~~~~~~~~~~~~~~i~~~~lp~p~~~dglp~~~~~~~ 87 (491)
T PLN02534 8 QLHFVLIPLMAQGHMIPMIDMARLLAERGVIVSLVTTPQNASRFAKTIDRARESGLPIRLVQIPFPCKEVGLPIGCENLD 87 (491)
T ss_pred CCEEEEECCCCcchHHHHHHHHHHHHhCCCeEEEEECCCcHHHHhhhhhhccccCCCeEEEEcCCCCccCCCCCCccccc
Confidence 379999999999999999999999999999999999986643211 11 138899988 57766532211
Q ss_pred c--HHHHHHHHH---HhchhHHHHHHHHHHhhcCCCCCceEEEecCccchHHHHHHHhCCceEEEecchHHHHHHHHh--
Q 046167 75 N--LVDSILLLN---ENCREPFRNWLVQMIKEQQPGDEIVCIIYDEVMYFAEASASQLNVQSIILRTSGAVTVVARLV-- 147 (424)
Q Consensus 75 ~--~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~pDlvi~d~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~-- 147 (424)
+ ....+..+. ..+...++++++.. .. +|++||+|.+..|+..+|+++|||++.+++.+.+....+..
T Consensus 88 ~~~~~~~~~~~~~~~~~l~~~l~~lL~~~----~~--pp~cIV~D~f~~Wa~dVA~~lgIP~v~F~t~~a~~~~~~~~~~ 161 (491)
T PLN02534 88 TLPSRDLLRKFYDAVDKLQQPLERFLEQA----KP--PPSCIISDKCLSWTSKTAQRFNIPRIVFHGMCCFSLLSSHNIR 161 (491)
T ss_pred cCCcHHHHHHHHHHHHHhHHHHHHHHHhc----CC--CCcEEEECCccHHHHHHHHHhCCCeEEEecchHHHHHHHHHHH
Confidence 1 112222222 23445555554432 12 68999999999999999999999999999888877654321
Q ss_pred --hhcc---------cccCCCC---CChh----------HHHHHHH-hh-hccCCceEEecChhhhhHHHHHHHHhccCC
Q 046167 148 --LFQL---------KEEGYNP---LKES----------YVQLINN-AY-SARTSSAVISNTIYCLEESVLSQLQQYFKV 201 (424)
Q Consensus 148 --~~~~---------~~~~~~p---~~~~----------~~~~~~~-~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 201 (424)
.+.. .-+++.+ .... ....+.+ .. ....++++++|||++||+.+++.+...+++
T Consensus 162 ~~~~~~~~~~~~~~~~iPg~p~~~~l~~~dlp~~~~~~~~~~~~~~~~~~~~~~a~~vlvNTf~eLE~~~l~~l~~~~~~ 241 (491)
T PLN02534 162 LHNAHLSVSSDSEPFVVPGMPQSIEITRAQLPGAFVSLPDLDDVRNKMREAESTAFGVVVNSFNELEHGCAEAYEKAIKK 241 (491)
T ss_pred HhcccccCCCCCceeecCCCCccccccHHHCChhhcCcccHHHHHHHHHhhcccCCEEEEecHHHhhHHHHHHHHhhcCC
Confidence 1100 0011111 1110 0122222 22 223467899999999999999999876767
Q ss_pred CeeeecccccCCCCCC-----CCCcc-cccccccccccCCCCeEEEEEeCCcccCCHHHHHHHHHHHHhCCCCeEEEEcC
Q 046167 202 PNFPIGPLHKFAPSSN-----GSLLK-EDTSCISWLNNQSPKSVIYVSLGSVASMDKKELEEMAWGLVNSKQPFLWVIRP 275 (424)
Q Consensus 202 ~~~~vGp~~~~~~~~~-----~~~~~-~~~~l~~~l~~~~~~~~I~vs~Gs~~~~~~~~~~~~~~a~~~~~~~~i~~~~~ 275 (424)
+++.|||++....... ..... ++.++.+||+.++++++|||+|||.....++++.+++.+++.++.+|||+++.
T Consensus 242 ~v~~VGPL~~~~~~~~~~~~~~~~~~~~~~~cl~wLd~~~~~sVvyvsfGS~~~~~~~q~~e~a~gl~~~~~~flW~~r~ 321 (491)
T PLN02534 242 KVWCVGPVSLCNKRNLDKFERGNKASIDETQCLEWLDSMKPRSVIYACLGSLCRLVPSQLIELGLGLEASKKPFIWVIKT 321 (491)
T ss_pred cEEEECcccccccccccccccCCccccchHHHHHHHhcCCCCceEEEEecccccCCHHHHHHHHHHHHhCCCCEEEEEec
Confidence 8999999974321100 00111 23458899999888999999999999889999999999999999999999985
Q ss_pred CCCCCCcccccCchhHHHHhc-CCCceeeecchhhhhccccccccccccchhhHHHhhhcCCceeecCcccchhhHHHHH
Q 046167 276 RTNNAPEGIELLPKVLAEDVQ-ENGYIVKWAPQKEVLSHVAVGGFWSHCGWNSTLESICEGVPMICMPFFEDQKVNARYL 354 (424)
Q Consensus 276 ~~~~~~~~~~~l~~~~~~~~~-~nv~v~~~ip~~~ll~~~~~~~~i~hgG~~t~~eal~~GvP~v~~P~~~DQ~~na~~~ 354 (424)
+..........+|++|.++.. .++++.+|+||.+||+|+++++||||||+||++||+++|||+|++|.++||+.||+++
T Consensus 322 ~~~~~~~~~~~~p~gf~~~~~~~g~~v~~w~pq~~iL~h~~v~~fvtH~G~ns~~ea~~~GvP~v~~P~~~dq~~na~~~ 401 (491)
T PLN02534 322 GEKHSELEEWLVKENFEERIKGRGLLIKGWAPQVLILSHPAIGGFLTHCGWNSTIEGICSGVPMITWPLFAEQFLNEKLI 401 (491)
T ss_pred CccccchhhhcCchhhHHhhccCCeeccCCCCHHHHhcCCccceEEecCccHHHHHHHHcCCCEEeccccccHHHHHHHH
Confidence 321110001136788887754 5666779999999999999999999999999999999999999999999999999999
Q ss_pred HhhhhcceecC-------------c-ccchHHHHHHHHHHhc--ccchHHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHH
Q 046167 355 SHVWGVGLELE-------------H-ELERGAVEKAVRKLTV--DKEGEFLRQRAAQLKEEVELSTRKGGFSYNSLNELL 418 (424)
Q Consensus 355 ~~~~G~g~~~~-------------~-~~~~~~L~~ai~~ll~--~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~a~~~~~ 418 (424)
++.||+|+.+. . -.+.++|+++|+++|. .++++.+|+||++++++.++++.+||++++.+++|+
T Consensus 402 ~e~~~vGv~~~~~~~~~~~~~~~~~~~v~~eev~~~v~~~m~~~~eeg~~~R~rA~elk~~a~~Av~~GGSS~~nl~~fv 481 (491)
T PLN02534 402 VEVLRIGVRVGVEVPVRWGDEERVGVLVKKDEVEKAVKTLMDDGGEEGERRRRRAQELGVMARKAMELGGSSHINLSILI 481 (491)
T ss_pred HHhhcceEEecccccccccccccccCccCHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHH
Confidence 87689999873 1 2689999999999997 344689999999999999999999999999999999
Q ss_pred HHHhc
Q 046167 419 DLINK 423 (424)
Q Consensus 419 ~~~~~ 423 (424)
+.+.+
T Consensus 482 ~~i~~ 486 (491)
T PLN02534 482 QDVLK 486 (491)
T ss_pred HHHHH
Confidence 99864
No 19
>PLN03004 UDP-glycosyltransferase
Probab=100.00 E-value=1.5e-55 Score=424.86 Aligned_cols=397 Identities=27% Similarity=0.464 Sum_probs=302.6
Q ss_pred ceEEEEcCCCccChHHHHHHHHHHHhCC--CeEEEE--eCCCCCC-------C-CCCCCCceEEeCCCCCCCCc--cccc
Q 046167 9 RRVVLVPSPHQGHINPMLQLGTILHSKG--FSITVV--HTQFNSP-------N-PSNHPEFEFQSIPDGLMDVN--ISAR 74 (424)
Q Consensus 9 ~ril~~~~~~~GH~~p~~~la~~L~~~G--h~V~~~--~~~~~~~-------~-~~~~~g~~~~~~~~~~~~~~--~~~~ 74 (424)
.||+++|+++.||++|++.||+.|+.+| +.||+. ++..+.. . ....++++++.+|.+.+... ....
T Consensus 4 ~Hvvl~P~p~qGHi~P~l~LA~~La~~g~~~~vti~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~~~~~~~~~ 83 (451)
T PLN03004 4 EAIVLYPAPPIGHLVSMVELGKTILSKNPSLSIHIILVPPPYQPESTATYISSVSSSFPSITFHHLPAVTPYSSSSTSRH 83 (451)
T ss_pred cEEEEeCCcccchHHHHHHHHHHHHhCCCceEEEEEEecCcchhhhhhhhhccccCCCCCeEEEEcCCCCCCCCcccccc
Confidence 4999999999999999999999999998 556654 4433211 1 11124699999997653222 1222
Q ss_pred cHHHHHHHHHHhchhHHHHHHHHHHhhcCCCCCceEEEecCccchHHHHHHHhCCceEEEecchHHHHHHHHhhhccc--
Q 046167 75 NLVDSILLLNENCREPFRNWLVQMIKEQQPGDEIVCIIYDEVMYFAEASASQLNVQSIILRTSGAVTVVARLVLFQLK-- 152 (424)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pDlvi~d~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~-- 152 (424)
+....+......+...+.+.++++... . ++++||+|.+..|+..+|+++|||++.+++++++..+.+.+.+...
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~l~~l~~~--~--pv~cII~D~~~~Wa~~vA~~lgIP~v~F~t~sA~~~~~~~~~~~~~~~ 159 (451)
T PLN03004 84 HHESLLLEILCFSNPSVHRTLFSLSRN--F--NVRAMIIDFFCTAVLDITADFTFPVYFFYTSGAACLAFSFYLPTIDET 159 (451)
T ss_pred CHHHHHHHHHHhhhHHHHHHHHhcCCC--C--CceEEEECCcchhHHHHHHHhCCCEEEEeCHhHHHHHHHHHHHhcccc
Confidence 333344444456667777777766221 1 4599999999999999999999999999999998887765543110
Q ss_pred -------------ccCCCCCChh------------HHHHHHH-hhhccCCceEEecChhhhhHHHHHHHHhccC-CCeee
Q 046167 153 -------------EEGYNPLKES------------YVQLINN-AYSARTSSAVISNTIYCLEESVLSQLQQYFK-VPNFP 205 (424)
Q Consensus 153 -------------~~~~~p~~~~------------~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~~ 205 (424)
-+++.+.... ..+.+.+ ......++++++|||+++|+..++.+...+. ++++.
T Consensus 160 ~~~~~~~~~~~v~iPg~p~l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~vl~NTf~eLE~~~l~~l~~~~~~~~v~~ 239 (451)
T PLN03004 160 TPGKNLKDIPTVHIPGVPPMKGSDMPKAVLERDDEVYDVFIMFGKQLSKSSGIIINTFDALENRAIKAITEELCFRNIYP 239 (451)
T ss_pred ccccccccCCeecCCCCCCCChHHCchhhcCCchHHHHHHHHHHHhhcccCeeeeeeHHHhHHHHHHHHHhcCCCCCEEE
Confidence 0111111110 0233344 4556778899999999999999999876532 57999
Q ss_pred ecccccCCCCCCCCCcccccccccccccCCCCeEEEEEeCCcccCCHHHHHHHHHHHHhCCCCeEEEEcCCCCCCCc--c
Q 046167 206 IGPLHKFAPSSNGSLLKEDTSCISWLNNQSPKSVIYVSLGSVASMDKKELEEMAWGLVNSKQPFLWVIRPRTNNAPE--G 283 (424)
Q Consensus 206 vGp~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~I~vs~Gs~~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~--~ 283 (424)
|||++......... ...+.++.+||+.++++++|||||||....+.+++++++.+|+.++++|||+++.+...... .
T Consensus 240 vGPl~~~~~~~~~~-~~~~~~c~~wLd~~~~~sVvyvsfGS~~~~~~~q~~ela~gL~~s~~~FlW~~r~~~~~~~~~~~ 318 (451)
T PLN03004 240 IGPLIVNGRIEDRN-DNKAVSCLNWLDSQPEKSVVFLCFGSLGLFSKEQVIEIAVGLEKSGQRFLWVVRNPPELEKTELD 318 (451)
T ss_pred EeeeccCccccccc-cchhhHHHHHHHhCCCCceEEEEecccccCCHHHHHHHHHHHHHCCCCEEEEEcCCccccccccc
Confidence 99997432110011 11234588999988889999999999988999999999999999999999999854210000 0
Q ss_pred cc-cCchhHHHHhcC-CCceeeecchhhhhccccccccccccchhhHHHhhhcCCceeecCcccchhhHHHHHHhhhhcc
Q 046167 284 IE-LLPKVLAEDVQE-NGYIVKWAPQKEVLSHVAVGGFWSHCGWNSTLESICEGVPMICMPFFEDQKVNARYLSHVWGVG 361 (424)
Q Consensus 284 ~~-~l~~~~~~~~~~-nv~v~~~ip~~~ll~~~~~~~~i~hgG~~t~~eal~~GvP~v~~P~~~DQ~~na~~~~~~~G~g 361 (424)
.. .+|++|.++..+ |+++.+|+||.+||+|+++++||||||+||++||+++|||+|++|+++||+.||+++++.+|+|
T Consensus 319 ~~~~lp~gf~er~~~~g~~v~~W~PQ~~iL~H~~v~~FvTH~G~nS~lEal~~GVP~v~~P~~~DQ~~na~~~~~~~g~g 398 (451)
T PLN03004 319 LKSLLPEGFLSRTEDKGMVVKSWAPQVPVLNHKAVGGFVTHCGWNSILEAVCAGVPMVAWPLYAEQRFNRVMIVDEIKIA 398 (451)
T ss_pred hhhhCChHHHHhccCCcEEEEeeCCHHHHhCCCccceEeccCcchHHHHHHHcCCCEEeccccccchhhHHHHHHHhCce
Confidence 12 388899988875 5566799999999999999999999999999999999999999999999999999997547999
Q ss_pred eecCc----ccchHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHhhcCCCcHHH
Q 046167 362 LELEH----ELERGAVEKAVRKLTVDKEGEFLRQRAAQLKEEVELSTRKGGFSYNS 413 (424)
Q Consensus 362 ~~~~~----~~~~~~L~~ai~~ll~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~a 413 (424)
+.++. ..++++|+++|+++++| ++||+++++++++.+.++++||+++++
T Consensus 399 ~~l~~~~~~~~~~e~l~~av~~vm~~---~~~r~~a~~~~~~a~~Av~~GGSS~~~ 451 (451)
T PLN03004 399 ISMNESETGFVSSTEVEKRVQEIIGE---CPVRERTMAMKNAAELALTETGSSHTA 451 (451)
T ss_pred EEecCCcCCccCHHHHHHHHHHHhcC---HHHHHHHHHHHHHHHHHhcCCCCCCCC
Confidence 99963 36999999999999998 899999999999999999999998753
No 20
>PLN02167 UDP-glycosyltransferase family protein
Probab=100.00 E-value=5.8e-55 Score=427.82 Aligned_cols=410 Identities=23% Similarity=0.387 Sum_probs=309.5
Q ss_pred ceEEEEcCCCccChHHHHHHHHHHHhCC---CeEEEEeCCCCCC---C------CCCCCCceEEeCCCCCCC-Ccc-ccc
Q 046167 9 RRVVLVPSPHQGHINPMLQLGTILHSKG---FSITVVHTQFNSP---N------PSNHPEFEFQSIPDGLMD-VNI-SAR 74 (424)
Q Consensus 9 ~ril~~~~~~~GH~~p~~~la~~L~~~G---h~V~~~~~~~~~~---~------~~~~~g~~~~~~~~~~~~-~~~-~~~ 74 (424)
.||+++|+++.||++|++.||+.|+.+| +.||++++..+.. . ....++++|+.+|.+... ... ...
T Consensus 4 ~hVv~~PfpaqGHi~P~l~LAk~La~~G~~~t~vt~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~p~~~~~~~~ 83 (475)
T PLN02167 4 AELIFVPFPSTGHILVTIEFAKRLINLDRRIHTITILYWSLPFAPQADAFLKSLIASEPRIRLVTLPEVQDPPPMELFVK 83 (475)
T ss_pred cEEEEeCChhhhhHHHHHHHHHHHHhCCCCeEEEEEEECCCCcchhhhHHHhhcccCCCCeEEEECCCCCCCcccccccc
Confidence 5999999999999999999999999998 4567777543221 0 111136999999965421 111 011
Q ss_pred cHHHHHHHHHHhchhHHHHHHHHHHhhc----CCCCCceEEEecCccchHHHHHHHhCCceEEEecchHHHHHHHHhhhc
Q 046167 75 NLVDSILLLNENCREPFRNWLVQMIKEQ----QPGDEIVCIIYDEVMYFAEASASQLNVQSIILRTSGAVTVVARLVLFQ 150 (424)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~pDlvi~d~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~ 150 (424)
.....+..+...+...+++.++.+.... .. ++++||+|.+..|+..+|+++|||++.++++++..++.+.+.+.
T Consensus 84 ~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~--pv~cvV~D~f~~Wa~dVA~elgIP~v~F~t~~A~~~~~~~~~~~ 161 (475)
T PLN02167 84 ASEAYILEFVKKMVPLVRDALSTLVSSRDESDSV--RVAGLVLDFFCVPLIDVGNEFNLPSYIFLTCNAGFLGMMKYLPE 161 (475)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHhhccccCCC--CeEEEEECCccHHHHHHHHHhCCCEEEEECccHHHHHHHHHHHH
Confidence 2223333344456666666666654211 11 34999999999999999999999999999999887776554321
Q ss_pred cc-----------------ccCCCC-CChhH----------HHHHHH-hhhccCCceEEecChhhhhHHHHHHHHhcc--
Q 046167 151 LK-----------------EEGYNP-LKESY----------VQLINN-AYSARTSSAVISNTIYCLEESVLSQLQQYF-- 199 (424)
Q Consensus 151 ~~-----------------~~~~~p-~~~~~----------~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-- 199 (424)
.. -+++.+ .+... .+.+.+ ......++++++|||+++|+..++.+....
T Consensus 162 ~~~~~~~~~~~~~~~~~~~iPgl~~~l~~~dlp~~~~~~~~~~~~~~~~~~~~~a~~vlvNTf~eLE~~~~~~l~~~~~~ 241 (475)
T PLN02167 162 RHRKTASEFDLSSGEEELPIPGFVNSVPTKVLPPGLFMKESYEAWVEIAERFPEAKGILVNSFTELEPNAFDYFSRLPEN 241 (475)
T ss_pred hccccccccccCCCCCeeECCCCCCCCChhhCchhhhCcchHHHHHHHHHhhcccCEeeeccHHHHHHHHHHHHHhhccc
Confidence 00 011100 11100 222333 455677899999999999999999886531
Q ss_pred CCCeeeecccccCCCCCCCCC-cccccccccccccCCCCeEEEEEeCCcccCCHHHHHHHHHHHHhCCCCeEEEEcCCCC
Q 046167 200 KVPNFPIGPLHKFAPSSNGSL-LKEDTSCISWLNNQSPKSVIYVSLGSVASMDKKELEEMAWGLVNSKQPFLWVIRPRTN 278 (424)
Q Consensus 200 ~~~~~~vGp~~~~~~~~~~~~-~~~~~~l~~~l~~~~~~~~I~vs~Gs~~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~~ 278 (424)
-+++++|||++.......... ...+.++.+||+.++++++|||||||+...+.+++.+++.+++.+++++||+++.+..
T Consensus 242 ~p~v~~vGpl~~~~~~~~~~~~~~~~~~~~~wld~~~~~svvyvsfGS~~~~~~~~~~ela~~l~~~~~~flw~~~~~~~ 321 (475)
T PLN02167 242 YPPVYPVGPILSLKDRTSPNLDSSDRDRIMRWLDDQPESSVVFLCFGSLGSLPAPQIKEIAQALELVGCRFLWSIRTNPA 321 (475)
T ss_pred CCeeEEeccccccccccCCCCCcchhHHHHHHHhcCCCCceEEEeecccccCCHHHHHHHHHHHHhCCCcEEEEEecCcc
Confidence 157999999976422100011 1123468999998888899999999998889999999999999999999999975421
Q ss_pred CCCcccccCchhHHHHhcCCCceeeecchhhhhccccccccccccchhhHHHhhhcCCceeecCcccchhhHHHH-HHhh
Q 046167 279 NAPEGIELLPKVLAEDVQENGYIVKWAPQKEVLSHVAVGGFWSHCGWNSTLESICEGVPMICMPFFEDQKVNARY-LSHV 357 (424)
Q Consensus 279 ~~~~~~~~l~~~~~~~~~~nv~v~~~ip~~~ll~~~~~~~~i~hgG~~t~~eal~~GvP~v~~P~~~DQ~~na~~-~~~~ 357 (424)
........+|++|.|+..+++++++|+||.+||+|+++++||||||+||++||+++|||||++|+++||+.||++ ++.
T Consensus 322 ~~~~~~~~lp~~~~er~~~rg~v~~w~PQ~~iL~h~~vg~fvtH~G~nS~~Eal~~GvP~l~~P~~~DQ~~na~~~~~~- 400 (475)
T PLN02167 322 EYASPYEPLPEGFMDRVMGRGLVCGWAPQVEILAHKAIGGFVSHCGWNSVLESLWFGVPIATWPMYAEQQLNAFTMVKE- 400 (475)
T ss_pred cccchhhhCChHHHHHhccCeeeeccCCHHHHhcCcccCeEEeeCCcccHHHHHHcCCCEEeccccccchhhHHHHHHH-
Confidence 111112358999999998999999999999999999999999999999999999999999999999999999976 566
Q ss_pred hhcceecCc--------ccchHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHhc
Q 046167 358 WGVGLELEH--------ELERGAVEKAVRKLTVDKEGEFLRQRAAQLKEEVELSTRKGGFSYNSLNELLDLINK 423 (424)
Q Consensus 358 ~G~g~~~~~--------~~~~~~L~~ai~~ll~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~a~~~~~~~~~~ 423 (424)
+|+|+.+.. .+++++|+++|+++|.++ +.||++++++++++++++.+||++++.+++|++.|.+
T Consensus 401 ~g~g~~~~~~~~~~~~~~~~~~~l~~av~~~m~~~--~~~r~~a~~~~~~~~~av~~gGsS~~~l~~~v~~i~~ 472 (475)
T PLN02167 401 LGLAVELRLDYVSAYGEIVKADEIAGAVRSLMDGE--DVPRKKVKEIAEAARKAVMDGGSSFVAVKRFIDDLLG 472 (475)
T ss_pred hCeeEEeecccccccCCcccHHHHHHHHHHHhcCC--HHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHh
Confidence 899998852 369999999999999763 5899999999999999999999999999999999864
No 21
>PLN03015 UDP-glucosyl transferase
Probab=100.00 E-value=8.8e-55 Score=419.14 Aligned_cols=402 Identities=29% Similarity=0.472 Sum_probs=308.5
Q ss_pred ceEEEEcCCCccChHHHHHHHHHHHhC-CCeEEEEeCCCCCCC------CCC---CCCceEEeCCCCCCCCc-cccccHH
Q 046167 9 RRVVLVPSPHQGHINPMLQLGTILHSK-GFSITVVHTQFNSPN------PSN---HPEFEFQSIPDGLMDVN-ISARNLV 77 (424)
Q Consensus 9 ~ril~~~~~~~GH~~p~~~la~~L~~~-Gh~V~~~~~~~~~~~------~~~---~~g~~~~~~~~~~~~~~-~~~~~~~ 77 (424)
.|++++|+++.||++|++.||+.|+.+ |..||++++...... ... ..+++++.+|.....+. ....+..
T Consensus 4 pHvvl~P~p~qGHi~P~l~LAk~La~~~g~~vT~v~t~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~~l~~~~~~~~ 83 (470)
T PLN03015 4 PHALLVASPGLGHLIPILELGNRLSSVLNIHVTILAVTSGSSSPTETEAIHAAAARTTCQITEIPSVDVDNLVEPDATIF 83 (470)
T ss_pred cEEEEECCcccccHHHHHHHHHHHHhCCCCeEEEEECCCchhhhccccccccccCCCceEEEECCCCccccCCCCCccHH
Confidence 399999999999999999999999987 999999987643321 111 12588999984332111 0001333
Q ss_pred HHHHHHHHhchhHHHHHHHHHHhhcCCCCCceEEEecCccchHHHHHHHhCCc-eEEEecchHHHHHHHHhhhccc----
Q 046167 78 DSILLLNENCREPFRNWLVQMIKEQQPGDEIVCIIYDEVMYFAEASASQLNVQ-SIILRTSGAVTVVARLVLFQLK---- 152 (424)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pDlvi~d~~~~~~~~~A~~lgiP-~v~~~~~~~~~~~~~~~~~~~~---- 152 (424)
..+......+...++++++++. . +|++||+|.+..|+..+|+++||| .+.+.+++......+++++...
T Consensus 84 ~~~~~~~~~~~~~~~~~l~~l~----~--~~~ciV~D~f~~w~~~vA~~lgIP~~~~f~~~~a~~~~~~~~l~~~~~~~~ 157 (470)
T PLN03015 84 TKMVVKMRAMKPAVRDAVKSMK----R--KPTVMIVDFFGTALMSIADDVGVTAKYVYIPSHAWFLAVMVYLPVLDTVVE 157 (470)
T ss_pred HHHHHHHHhchHHHHHHHHhcC----C--CCeEEEEcCCcHHHHHHHHHcCCCEEEEEcCHHHHHHHHHHhhhhhhcccc
Confidence 3334444466777777776653 1 689999999999999999999999 5777777766654444332100
Q ss_pred -------c----cCCCCCChhH------------HHHHHH-hhhccCCceEEecChhhhhHHHHHHHHhcc------CCC
Q 046167 153 -------E----EGYNPLKESY------------VQLINN-AYSARTSSAVISNTIYCLEESVLSQLQQYF------KVP 202 (424)
Q Consensus 153 -------~----~~~~p~~~~~------------~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~------~~~ 202 (424)
. ++..+..... +..+.+ ......++++++|||++||+..++.+...+ .++
T Consensus 158 ~~~~~~~~~~~vPg~p~l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~a~gvlvNTf~eLE~~~~~~l~~~~~~~~~~~~~ 237 (470)
T PLN03015 158 GEYVDIKEPLKIPGCKPVGPKELMETMLDRSDQQYKECVRSGLEVPMSDGVLVNTWEELQGNTLAALREDMELNRVMKVP 237 (470)
T ss_pred cccCCCCCeeeCCCCCCCChHHCCHhhcCCCcHHHHHHHHHHHhcccCCEEEEechHHHhHHHHHHHHhhcccccccCCc
Confidence 0 1111111110 222223 445778999999999999999999887642 257
Q ss_pred eeeecccccCCCCCCCCCcccccccccccccCCCCeEEEEEeCCcccCCHHHHHHHHHHHHhCCCCeEEEEcCCCCC---
Q 046167 203 NFPIGPLHKFAPSSNGSLLKEDTSCISWLNNQSPKSVIYVSLGSVASMDKKELEEMAWGLVNSKQPFLWVIRPRTNN--- 279 (424)
Q Consensus 203 ~~~vGp~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~I~vs~Gs~~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~~~--- 279 (424)
+++|||++.... ....+.++.+||+.++++++|||||||....+.+++.+++.+|+.++++|||+++.+...
T Consensus 238 v~~VGPl~~~~~-----~~~~~~~~~~WLd~~~~~sVvyvsFGS~~~~~~~q~~ela~gl~~s~~~FlWv~r~~~~~~~~ 312 (470)
T PLN03015 238 VYPIGPIVRTNV-----HVEKRNSIFEWLDKQGERSVVYVCLGSGGTLTFEQTVELAWGLELSGQRFVWVLRRPASYLGA 312 (470)
T ss_pred eEEecCCCCCcc-----cccchHHHHHHHHhCCCCCEEEEECCcCCcCCHHHHHHHHHHHHhCCCcEEEEEecCcccccc
Confidence 999999984311 111233699999988889999999999999999999999999999999999999743210
Q ss_pred ----CCcccccCchhHHHHhcCCCcee-eecchhhhhccccccccccccchhhHHHhhhcCCceeecCcccchhhHHHHH
Q 046167 280 ----APEGIELLPKVLAEDVQENGYIV-KWAPQKEVLSHVAVGGFWSHCGWNSTLESICEGVPMICMPFFEDQKVNARYL 354 (424)
Q Consensus 280 ----~~~~~~~l~~~~~~~~~~nv~v~-~~ip~~~ll~~~~~~~~i~hgG~~t~~eal~~GvP~v~~P~~~DQ~~na~~~ 354 (424)
..+..+.+|+++.++..++..++ +|+||.+||+|+++++||||||+||++|++++|||||++|+++||+.||+++
T Consensus 313 ~~~~~~~~~~~lp~~f~er~~~rGl~v~~W~PQ~~vL~h~~vg~fvtH~GwnS~~Eai~~GvP~v~~P~~~DQ~~na~~~ 392 (470)
T PLN03015 313 SSSDDDQVSASLPEGFLDRTRGVGLVVTQWAPQVEILSHRSIGGFLSHCGWSSVLESLTKGVPIVAWPLYAEQWMNATLL 392 (470)
T ss_pred ccccccchhhcCChHHHHhhccCceEEEecCCHHHHhccCccCeEEecCCchhHHHHHHcCCCEEecccccchHHHHHHH
Confidence 00012358899999988877655 9999999999999999999999999999999999999999999999999999
Q ss_pred HhhhhcceecC----c-ccchHHHHHHHHHHhcc--cchHHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHH
Q 046167 355 SHVWGVGLELE----H-ELERGAVEKAVRKLTVD--KEGEFLRQRAAQLKEEVELSTRKGGFSYNSLNELLDLI 421 (424)
Q Consensus 355 ~~~~G~g~~~~----~-~~~~~~L~~ai~~ll~~--~~~~~~~~~a~~l~~~~~~~~~~~g~~~~a~~~~~~~~ 421 (424)
++.+|+|+.+. . .++.+++.++|+++|.+ ++++.+|+||++++++.++++.+||++++.++++++.+
T Consensus 393 ~~~~gvg~~~~~~~~~~~v~~e~i~~~v~~lm~~~~eeg~~~R~ra~~lk~~a~~Av~eGGSS~~nl~~~~~~~ 466 (470)
T PLN03015 393 TEEIGVAVRTSELPSEKVIGREEVASLVRKIVAEEDEEGQKIRAKAEEVRVSSERAWSHGGSSYNSLFEWAKRC 466 (470)
T ss_pred HHHhCeeEEecccccCCccCHHHHHHHHHHHHccCcccHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHhc
Confidence 55489999995 2 58999999999999963 44689999999999999999999999999999999875
No 22
>PHA03392 egt ecdysteroid UDP-glucosyltransferase; Provisional
Probab=100.00 E-value=7.4e-46 Score=365.12 Aligned_cols=377 Identities=17% Similarity=0.181 Sum_probs=263.7
Q ss_pred ceEEEE-cCCCccChHHHHHHHHHHHhCCCeEEEEeCCCCC-CCCCCCCCceEEeCCCCCCCCc---ccc------c---
Q 046167 9 RRVVLV-PSPHQGHINPMLQLGTILHSKGFSITVVHTQFNS-PNPSNHPEFEFQSIPDGLMDVN---ISA------R--- 74 (424)
Q Consensus 9 ~ril~~-~~~~~GH~~p~~~la~~L~~~Gh~V~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~---~~~------~--- 74 (424)
.||+.+ |.++.+|..-+.+++++|++|||+||++++.... .......+++.+.++...+... ... .
T Consensus 21 ~kIl~~~P~~~~SH~~~~~~l~~~La~rGH~VTvi~p~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (507)
T PHA03392 21 ARILAVFPTPAYSHHSVFKVYVEALAERGHNVTVIKPTLRVYYASHLCGNITEIDASLSVEYFKKLVKSSAVFRKRGVVA 100 (507)
T ss_pred ccEEEEcCCCCCcHHHHHHHHHHHHHHcCCeEEEEecccccccccCCCCCEEEEEcCCChHHHHHHHhhhhHHHhhhhhh
Confidence 578766 7789999999999999999999999999774321 1111235677666541111000 000 0
Q ss_pred cH----HHHHHHHHHhchhHHHH--HHHHHHhhcCCCCCceEEEecCccchHHHHHHHh-CCceEEEecchHHHHHHHHh
Q 046167 75 NL----VDSILLLNENCREPFRN--WLVQMIKEQQPGDEIVCIIYDEVMYFAEASASQL-NVQSIILRTSGAVTVVARLV 147 (424)
Q Consensus 75 ~~----~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~pDlvi~d~~~~~~~~~A~~l-giP~v~~~~~~~~~~~~~~~ 147 (424)
+. ......+...|...+.+ +.+.+. .... ++|+||+|.+..|+..+|+.+ ++|+|.+++...........
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~-~~~~--kFDlvi~e~~~~c~~~la~~~~~~p~i~~ss~~~~~~~~~~~ 177 (507)
T PHA03392 101 DSSTVTADNYMGLVRMISDQFDLPNVKNLIA-NKNN--KFDLLVTEAFLDYPLVFSHLFGDAPVIQISSGYGLAENFETM 177 (507)
T ss_pred hHHHHHHHHHHHHHHHHHHHHCCHHHHHHHh-cCCC--ceeEEEecccchhHHHHHHHhCCCCEEEEcCCCCchhHHHhh
Confidence 00 00112223455555532 333342 1111 799999999889999999999 99998887765543322211
Q ss_pred hhcccccCCCCCChh-------H----------------HH--------HHHH-hhh--------ccCCceEEecChhhh
Q 046167 148 LFQLKEEGYNPLKES-------Y----------------VQ--------LINN-AYS--------ARTSSAVISNTIYCL 187 (424)
Q Consensus 148 ~~~~~~~~~~p~~~~-------~----------------~~--------~~~~-~~~--------~~~~~~~~~~~~~~l 187 (424)
-+.+.+++|.|.... . .. .+++ +.. ..+.+.+++|+...+
T Consensus 178 gg~p~~~syvP~~~~~~~~~Msf~~R~~N~~~~~~~~~~~~~~~~~~~~l~~~~f~~~~~~~~~l~~~~~l~lvns~~~~ 257 (507)
T PHA03392 178 GAVSRHPVYYPNLWRSKFGNLNVWETINEIYTELRLYNEFSLLADEQNKLLKQQFGPDTPTIRELRNRVQLLFVNVHPVF 257 (507)
T ss_pred ccCCCCCeeeCCcccCCCCCCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHcCCCCCCHHHHHhCCcEEEEecCccc
Confidence 113444556664321 1 00 0111 110 122345566666555
Q ss_pred hHHHHHHHHhccCCCeeeecccccCCCCCCCCCcccccccccccccCCCCeEEEEEeCCccc---CCHHHHHHHHHHHHh
Q 046167 188 EESVLSQLQQYFKVPNFPIGPLHKFAPSSNGSLLKEDTSCISWLNNQSPKSVIYVSLGSVAS---MDKKELEEMAWGLVN 264 (424)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~vGp~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~I~vs~Gs~~~---~~~~~~~~~~~a~~~ 264 (424)
+.+ +.++++++++||+..+.+ ...+.++++.+|++.. ++++|||||||... .+.++++.+++++++
T Consensus 258 d~~------rp~~p~v~~vGgi~~~~~----~~~~l~~~l~~fl~~~-~~g~V~vS~GS~~~~~~~~~~~~~~~l~a~~~ 326 (507)
T PHA03392 258 DNN------RPVPPSVQYLGGLHLHKK----PPQPLDDYLEEFLNNS-TNGVVYVSFGSSIDTNDMDNEFLQMLLRTFKK 326 (507)
T ss_pred cCC------CCCCCCeeeecccccCCC----CCCCCCHHHHHHHhcC-CCcEEEEECCCCCcCCCCCHHHHHHHHHHHHh
Confidence 432 346678999999987421 1223455688999854 46899999999864 578899999999999
Q ss_pred CCCCeEEEEcCCCCCCCcccccCchhHHHHhcCCCceeeecchhhhhccccccccccccchhhHHHhhhcCCceeecCcc
Q 046167 265 SKQPFLWVIRPRTNNAPEGIELLPKVLAEDVQENGYIVKWAPQKEVLSHVAVGGFWSHCGWNSTLESICEGVPMICMPFF 344 (424)
Q Consensus 265 ~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~nv~v~~~ip~~~ll~~~~~~~~i~hgG~~t~~eal~~GvP~v~~P~~ 344 (424)
+++++||..++.. .+ ...++|+++.+|+||.+||+|+++++||||||.||++||+++|||+|++|.+
T Consensus 327 l~~~viw~~~~~~---------~~----~~~p~Nv~i~~w~Pq~~lL~hp~v~~fItHGG~~s~~Eal~~GvP~v~iP~~ 393 (507)
T PHA03392 327 LPYNVLWKYDGEV---------EA----INLPANVLTQKWFPQRAVLKHKNVKAFVTQGGVQSTDEAIDALVPMVGLPMM 393 (507)
T ss_pred CCCeEEEEECCCc---------Cc----ccCCCceEEecCCCHHHHhcCCCCCEEEecCCcccHHHHHHcCCCEEECCCC
Confidence 9999999995431 11 1356888999999999999999999999999999999999999999999999
Q ss_pred cchhhHHHHHHhhhhcceecCc-ccchHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHH
Q 046167 345 EDQKVNARYLSHVWGVGLELEH-ELERGAVEKAVRKLTVDKEGEFLRQRAAQLKEEVELSTRKGGFSYNSLNELL 418 (424)
Q Consensus 345 ~DQ~~na~~~~~~~G~g~~~~~-~~~~~~L~~ai~~ll~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~a~~~~~ 418 (424)
+||+.||+++++ +|+|+.++. ++++++|.++|+++|+| ++|+++|+++++.+++. .-.+.++|++-++
T Consensus 394 ~DQ~~Na~rv~~-~G~G~~l~~~~~t~~~l~~ai~~vl~~---~~y~~~a~~ls~~~~~~--p~~~~~~av~~iE 462 (507)
T PHA03392 394 GDQFYNTNKYVE-LGIGRALDTVTVSAAQLVLAIVDVIEN---PKYRKNLKELRHLIRHQ--PMTPLHKAIWYTE 462 (507)
T ss_pred ccHHHHHHHHHH-cCcEEEeccCCcCHHHHHHHHHHHhCC---HHHHHHHHHHHHHHHhC--CCCHHHHHHHHHH
Confidence 999999999999 699999998 89999999999999999 89999999999999975 1124566665443
No 23
>TIGR01426 MGT glycosyltransferase, MGT family. This model describes the MGT (macroside glycosyltransferase) subfamily of the UDP-glucuronosyltransferase family. Members include a number of glucosyl transferases for macrolide antibiotic inactivation, but also include transferases of glucose-related sugars for macrolide antibiotic production.
Probab=100.00 E-value=1.4e-43 Score=343.86 Aligned_cols=368 Identities=20% Similarity=0.245 Sum_probs=252.6
Q ss_pred EcCCCccChHHHHHHHHHHHhCCCeEEEEeCCCCCCCCCCCCCceEEeCCCCCCCCccc----cccHHHHHHHHHHhchh
Q 046167 14 VPSPHQGHINPMLQLGTILHSKGFSITVVHTQFNSPNPSNHPEFEFQSIPDGLMDVNIS----ARNLVDSILLLNENCRE 89 (424)
Q Consensus 14 ~~~~~~GH~~p~~~la~~L~~~Gh~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~ 89 (424)
+.+|+.||++|+++||++|+++||+|++++++........ .|+.|..++......... ..+.......+...+..
T Consensus 1 ~~~p~~Ghv~P~l~lA~~L~~~Gh~V~~~~~~~~~~~v~~-~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (392)
T TIGR01426 1 FNIPAHGHVNPTLGVVEELVARGHRVTYATTEEFAERVEA-AGAEFVLYGSALPPPDNPPENTEEEPIDIIEKLLDEAED 79 (392)
T ss_pred CCCCccccccccHHHHHHHHhCCCeEEEEeCHHHHHHHHH-cCCEEEecCCcCccccccccccCcchHHHHHHHHHHHHH
Confidence 3578999999999999999999999999999754444332 789999998654331111 02333334444333444
Q ss_pred HHHHHHHHHHhhcCCCCCceEEEecCccchHHHHHHHhCCceEEEecchHHHHHHHHhhhccc---ccC---CCCCC---
Q 046167 90 PFRNWLVQMIKEQQPGDEIVCIIYDEVMYFAEASASQLNVQSIILRTSGAVTVVARLVLFQLK---EEG---YNPLK--- 160 (424)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~pDlvi~d~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~---~~~---~~p~~--- 160 (424)
.+..+.+.+.+. +||+||+|.+++++..+|+.+|||+|.+++.+.... .++... ... ..+..
T Consensus 80 ~~~~l~~~~~~~-----~pDlVi~d~~~~~~~~~A~~~giP~v~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~ 150 (392)
T TIGR01426 80 VLPQLEEAYKGD-----RPDLIVYDIASWTGRLLARKWDVPVISSFPTFAANE----EFEEMVSPAGEGSAEEGAIAERG 150 (392)
T ss_pred HHHHHHHHhcCC-----CCCEEEECCccHHHHHHHHHhCCCEEEEehhhcccc----cccccccccchhhhhhhccccch
Confidence 444343333222 899999999888999999999999998865432110 000000 000 00000
Q ss_pred -hhHHHHHHH-hhhcc----CCceEEecC---hhhhhHHHHHHHHhccCCCeeeecccccCCCCCCCCCccccccccccc
Q 046167 161 -ESYVQLINN-AYSAR----TSSAVISNT---IYCLEESVLSQLQQYFKVPNFPIGPLHKFAPSSNGSLLKEDTSCISWL 231 (424)
Q Consensus 161 -~~~~~~~~~-~~~~~----~~~~~~~~~---~~~l~~~~~~~~~~~~~~~~~~vGp~~~~~~~~~~~~~~~~~~l~~~l 231 (424)
....+.+.+ ..... ......... .-...++.+......++++++++||+....+. ...|.
T Consensus 151 ~~~~~~~~~~~r~~~gl~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~Gp~~~~~~~-----------~~~~~ 219 (392)
T TIGR01426 151 LAEYVARLSALLEEHGITTPPVEFLAAPRRDLNLVYTPKAFQPAGETFDDSFTFVGPCIGDRKE-----------DGSWE 219 (392)
T ss_pred hHHHHHHHHHHHHHhCCCCCCHHHHhcCCcCcEEEeCChHhCCCccccCCCeEEECCCCCCccc-----------cCCCC
Confidence 011111111 11000 000000000 00111223333334566779999998754211 12355
Q ss_pred ccCCCCeEEEEEeCCcccCCHHHHHHHHHHHHhCCCCeEEEEcCCCCCCCcccccCchhHHHHhcCCCceeeecchhhhh
Q 046167 232 NNQSPKSVIYVSLGSVASMDKKELEEMAWGLVNSKQPFLWVIRPRTNNAPEGIELLPKVLAEDVQENGYIVKWAPQKEVL 311 (424)
Q Consensus 232 ~~~~~~~~I~vs~Gs~~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~nv~v~~~ip~~~ll 311 (424)
....++++||||+||.......++..+++++.+.+.+++|.++.+. ..+.+ ...++|+.+.+|+|+.++|
T Consensus 220 ~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~g~~~---------~~~~~-~~~~~~v~~~~~~p~~~ll 289 (392)
T TIGR01426 220 RPGDGRPVVLISLGTVFNNQPSFYRTCVEAFRDLDWHVVLSVGRGV---------DPADL-GELPPNVEVRQWVPQLEIL 289 (392)
T ss_pred CCCCCCCEEEEecCccCCCCHHHHHHHHHHHhcCCCeEEEEECCCC---------ChhHh-ccCCCCeEEeCCCCHHHHH
Confidence 5456788999999998665667888899999999999888874321 01111 1246788999999999999
Q ss_pred ccccccccccccchhhHHHhhhcCCceeecCcccchhhHHHHHHhhhhcceecCc-ccchHHHHHHHHHHhcccchHHHH
Q 046167 312 SHVAVGGFWSHCGWNSTLESICEGVPMICMPFFEDQKVNARYLSHVWGVGLELEH-ELERGAVEKAVRKLTVDKEGEFLR 390 (424)
Q Consensus 312 ~~~~~~~~i~hgG~~t~~eal~~GvP~v~~P~~~DQ~~na~~~~~~~G~g~~~~~-~~~~~~L~~ai~~ll~~~~~~~~~ 390 (424)
+++++ +|||||.||++||+++|+|+|++|...||..||+++++ +|+|..+.. +++++.|.++|+++|+| ++++
T Consensus 290 ~~~~~--~I~hgG~~t~~Eal~~G~P~v~~p~~~dq~~~a~~l~~-~g~g~~l~~~~~~~~~l~~ai~~~l~~---~~~~ 363 (392)
T TIGR01426 290 KKADA--FITHGGMNSTMEALFNGVPMVAVPQGADQPMTARRIAE-LGLGRHLPPEEVTAEKLREAVLAVLSD---PRYA 363 (392)
T ss_pred hhCCE--EEECCCchHHHHHHHhCCCEEecCCcccHHHHHHHHHH-CCCEEEeccccCCHHHHHHHHHHHhcC---HHHH
Confidence 88776 99999999999999999999999999999999999999 699999987 78999999999999999 7899
Q ss_pred HHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHh
Q 046167 391 QRAAQLKEEVELSTRKGGFSYNSLNELLDLIN 422 (424)
Q Consensus 391 ~~a~~l~~~~~~~~~~~g~~~~a~~~~~~~~~ 422 (424)
++++++++++++. ++...+++.+++.+.
T Consensus 364 ~~~~~l~~~~~~~----~~~~~aa~~i~~~~~ 391 (392)
T TIGR01426 364 ERLRKMRAEIREA----GGARRAADEIEGFLA 391 (392)
T ss_pred HHHHHHHHHHHHc----CCHHHHHHHHHHhhc
Confidence 9999999999987 888999988887765
No 24
>PF00201 UDPGT: UDP-glucoronosyl and UDP-glucosyl transferase; InterPro: IPR002213 UDP glycosyltransferases (UGT) are a superfamily of enzymes that catalyzes the addition of the glycosyl group from a UTP-sugar to a small hydrophobic molecule. This family currently consist of: Mammalian UDP-glucuronosyl transferases (2.4.1.17 from EC) (UDPGT) []. A large family of membrane-bound microsomal enzymes which catalyze the transfer of glucuronic acid to a wide variety of exogenous and endogenous lipophilic substrates. These enzymes are of major importance in the detoxification and subsequent elimination of xenobiotics such as drugs and carcinogens. A large number of putative UDPGT from Caenorhabditis elegans. Mammalian 2-hydroxyacylsphingosine 1-beta-galactosyltransferase [] (2.4.1.45 from EC) (also known as UDP-galactose-ceramide galactosyltransferase). This enzyme catalyzes the transfer of galactose to ceramide, a key enzymatic step in the biosynthesis of galactocerebrosides, which are abundant sphingolipids of the myelin membrane of the central nervous system and peripheral nervous system. Plants flavonol O(3)-glucosyltransferase (2.4.1.91 from EC). An enzyme [] that catalyzes the transfer of glucose from UDP-glucose to a flavanol. This reaction is essential and one of the last steps in anthocyanin pigment biosynthesis. Baculoviruses ecdysteroid UDP-glucosyltransferase (2.4.1 from EC) [] (egt). This enzyme catalyzes the transfer of glucose from UDP-glucose to ectysteroids which are insect molting hormones. The expression of egt in the insect host interferes with the normal insect development by blocking the molting process. Prokaryotic zeaxanthin glucosyltransferase (2.4.1 from EC) (gene crtX), an enzyme involved in carotenoid biosynthesis and that catalyses the glycosylation reaction which converts zeaxanthin to zeaxanthin-beta-diglucoside. Streptomyces macrolide glycosyltransferases (2.4.1 from EC) []. These enzymes specifically inactivates macrolide anitibiotics via 2'-O-glycosylation using UDP-glucose. These enzymes share a conserved domain of about 50 amino acid residues located in their C-terminal section.; GO: 0016758 transferase activity, transferring hexosyl groups, 0008152 metabolic process; PDB: 3HBJ_A 3HBF_A 2PQ6_A 3IA7_B 3RSC_A 3IAA_B 2IYA_A 2IYF_B 2O6L_A 2VCH_A ....
Probab=100.00 E-value=2e-46 Score=375.02 Aligned_cols=363 Identities=25% Similarity=0.349 Sum_probs=216.8
Q ss_pred eEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCCCCCCC-CCCCCCceEEeCCCCCCCCccc--c-------------
Q 046167 10 RVVLVPSPHQGHINPMLQLGTILHSKGFSITVVHTQFNSPN-PSNHPEFEFQSIPDGLMDVNIS--A------------- 73 (424)
Q Consensus 10 ril~~~~~~~GH~~p~~~la~~L~~~Gh~V~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~--~------------- 73 (424)
|||++|. +.||+.++..|+++|++|||+||++++...... .....++++..++.+.+..... .
T Consensus 2 kvLv~p~-~~SH~~~~~~l~~~L~~rGH~VTvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (500)
T PF00201_consen 2 KVLVFPM-AYSHFIFMRPLAEELAERGHNVTVLTPSPSSSLNPSKPSNIRFETYPDPYPEEEFEEIFPEFISKFFSESSF 80 (500)
T ss_dssp -----------SHHHHHHHHHHHHHH-TTSEEEHHHHHHT------S-CCEEEE-----TT------TTHHHHHHHHHCC
T ss_pred EEEEeCC-CcCHHHHHHHHHHHHHhcCCceEEEEeecccccccccccceeeEEEcCCcchHHHhhhhHHHHHHHhhhccc
Confidence 7888875 789999999999999999999999988532111 1222466676666444332200 0
Q ss_pred -ccHHHHHH-------HHHHhchhHHH--HHHHHHHhhcCCCCCceEEEecCccchHHHHHHHhCCceEEEecchHHHHH
Q 046167 74 -RNLVDSIL-------LLNENCREPFR--NWLVQMIKEQQPGDEIVCIIYDEVMYFAEASASQLNVQSIILRTSGAVTVV 143 (424)
Q Consensus 74 -~~~~~~~~-------~~~~~~~~~~~--~~~~~~~~~~~~~~~pDlvi~d~~~~~~~~~A~~lgiP~v~~~~~~~~~~~ 143 (424)
......+. .....|...+. ++++.+++. ++|++|+|.+..|+..+|+.+++|++...+.......
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~C~~~l~d~~l~~~l~~~-----~fDlvI~d~f~~c~~~la~~l~iP~i~~~s~~~~~~~ 155 (500)
T PF00201_consen 81 ANSFWEMFKMLNAFFDFFSKSCEDLLSDPELMEQLKSE-----KFDLVISDAFDPCGLALAHYLGIPVIIISSSTPMYDL 155 (500)
T ss_dssp HHHHHHHHHHHHCHHHS----E--EEEETTSTTHHHHH-----HHCT-EEEEEESSHHHHHHHHHHTHHHHHHCCSCSCC
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhh-----ccccceEeeccchhHHHHHHhcCCeEEEecccccchh
Confidence 01111111 11123332221 233444444 7999999998899999999999999865443221111
Q ss_pred HHHhhhcccccCCCCCChh---------------HH----HHHHH-hhhccCCceEEecChhhhhHHH------------
Q 046167 144 ARLVLFQLKEEGYNPLKES---------------YV----QLINN-AYSARTSSAVISNTIYCLEESV------------ 191 (424)
Q Consensus 144 ~~~~~~~~~~~~~~p~~~~---------------~~----~~~~~-~~~~~~~~~~~~~~~~~l~~~~------------ 191 (424)
.......+..++|.|.... .. +...+ .............+.+......
T Consensus 156 ~~~~~g~p~~psyvP~~~s~~~~~msf~~Ri~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~ns~ 235 (500)
T PF00201_consen 156 SSFSGGVPSPPSYVPSMFSDFSDRMSFWQRIKNFLFYLYFRFIFRYFFSPQDKLYKKYFGFPFSFRELLSNASLVLINSH 235 (500)
T ss_dssp TCCTSCCCTSTTSTTCBCCCSGTTSSSST--TTSHHHHHHHHHHHHGGGS-TTS-EEESS-GGGCHHHHHHHHHCCSSTE
T ss_pred hhhccCCCCChHHhccccccCCCccchhhhhhhhhhhhhhccccccchhhHHHHHhhhcccccccHHHHHHHHHHhhhcc
Confidence 1111122233455554221 01 11111 1111111111112211111111
Q ss_pred --HHHHHhccCCCeeeecccccCCCCCCCCCcccccccccccccCCCCeEEEEEeCCccc-CCHHHHHHHHHHHHhCCCC
Q 046167 192 --LSQLQQYFKVPNFPIGPLHKFAPSSNGSLLKEDTSCISWLNNQSPKSVIYVSLGSVAS-MDKKELEEMAWGLVNSKQP 268 (424)
Q Consensus 192 --~~~~~~~~~~~~~~vGp~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~I~vs~Gs~~~-~~~~~~~~~~~a~~~~~~~ 268 (424)
++++++ +.+++.++|++....+ +. ...++..|++...++++|||||||... ++.+..+.+++++++++++
T Consensus 236 ~~ld~prp-~~p~v~~vGgl~~~~~----~~--l~~~~~~~~~~~~~~~vv~vsfGs~~~~~~~~~~~~~~~~~~~~~~~ 308 (500)
T PF00201_consen 236 PSLDFPRP-LLPNVVEVGGLHIKPA----KP--LPEELWNFLDSSGKKGVVYVSFGSIVSSMPEEKLKEIAEAFENLPQR 308 (500)
T ss_dssp EE----HH-HHCTSTTGCGC-S--------T--CHHHHHHHTSTTTTTEEEEEE-TSSSTT-HHHHHHHHHHHHHCSTTE
T ss_pred ccCcCCcc-hhhcccccCccccccc----cc--cccccchhhhccCCCCEEEEecCcccchhHHHHHHHHHHHHhhCCCc
Confidence 111222 2356899999876532 22 334588899864578999999999976 4455688899999999999
Q ss_pred eEEEEcCCCCCCCcccccCchhHHHHhcCCCceeeecchhhhhccccccccccccchhhHHHhhhcCCceeecCcccchh
Q 046167 269 FLWVIRPRTNNAPEGIELLPKVLAEDVQENGYIVKWAPQKEVLSHVAVGGFWSHCGWNSTLESICEGVPMICMPFFEDQK 348 (424)
Q Consensus 269 ~i~~~~~~~~~~~~~~~~l~~~~~~~~~~nv~v~~~ip~~~ll~~~~~~~~i~hgG~~t~~eal~~GvP~v~~P~~~DQ~ 348 (424)
+||.+++. +.. .+++|+++.+|+||.+||.||++++||||||+||+.||+++|||+|++|+++||+
T Consensus 309 ~iW~~~~~-----------~~~---~l~~n~~~~~W~PQ~~lL~hp~v~~fitHgG~~s~~Ea~~~gvP~l~~P~~~DQ~ 374 (500)
T PF00201_consen 309 FIWKYEGE-----------PPE---NLPKNVLIVKWLPQNDLLAHPRVKLFITHGGLNSTQEALYHGVPMLGIPLFGDQP 374 (500)
T ss_dssp EEEEETCS-----------HGC---HHHTTEEEESS--HHHHHTSTTEEEEEES--HHHHHHHHHCT--EEE-GCSTTHH
T ss_pred cccccccc-----------ccc---cccceEEEeccccchhhhhcccceeeeeccccchhhhhhhccCCccCCCCcccCC
Confidence 99999532 222 2668899999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHhhhhcceecCc-ccchHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHH
Q 046167 349 VNARYLSHVWGVGLELEH-ELERGAVEKAVRKLTVDKEGEFLRQRAAQLKEEVELS 403 (424)
Q Consensus 349 ~na~~~~~~~G~g~~~~~-~~~~~~L~~ai~~ll~~~~~~~~~~~a~~l~~~~~~~ 403 (424)
.||+++++ .|+|+.++. +++.++|.++|+++|+| ++|++||+++++.+++.
T Consensus 375 ~na~~~~~-~G~g~~l~~~~~~~~~l~~ai~~vl~~---~~y~~~a~~ls~~~~~~ 426 (500)
T PF00201_consen 375 RNAARVEE-KGVGVVLDKNDLTEEELRAAIREVLEN---PSYKENAKRLSSLFRDR 426 (500)
T ss_dssp HHHHHHHH-TTSEEEEGGGC-SHHHHHHHHHHHHHS---HHHHHHHHHHHHTTT--
T ss_pred ccceEEEE-EeeEEEEEecCCcHHHHHHHHHHHHhh---hHHHHHHHHHHHHHhcC
Confidence 99999999 599999998 89999999999999999 89999999999999854
No 25
>cd03784 GT1_Gtf_like This family includes the Gtfs, a group of homologous glycosyltransferases involved in the final stages of the biosynthesis of antibiotics vancomycin and related chloroeremomycin. Gtfs transfer sugar moieties from an activated NDP-sugar donor to the oxidatively cross-linked heptapeptide core of vancomycin group antibiotics. The core structure is important for the bioactivity of the antibiotics.
Probab=100.00 E-value=4.9e-43 Score=341.39 Aligned_cols=367 Identities=17% Similarity=0.182 Sum_probs=242.4
Q ss_pred ceEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCCCCCCCCCCCCCceEEeCCCCCCCCccc-----------cccHH
Q 046167 9 RRVVLVPSPHQGHINPMLQLGTILHSKGFSITVVHTQFNSPNPSNHPEFEFQSIPDGLMDVNIS-----------ARNLV 77 (424)
Q Consensus 9 ~ril~~~~~~~GH~~p~~~la~~L~~~Gh~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-----------~~~~~ 77 (424)
|||+|++.|+.||++|+++||++|++|||+|+|++++....... ..|++|.+++...+..... .....
T Consensus 1 mrIl~~~~p~~GHv~P~l~la~~L~~rGh~V~~~t~~~~~~~v~-~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (401)
T cd03784 1 MRVLITTIGSRGDVQPLVALAWALRAAGHEVRVATPPEFADLVE-AAGLEFVPVGGDPDELLASPERNAGLLLLGPGLLL 79 (401)
T ss_pred CeEEEEeCCCcchHHHHHHHHHHHHHCCCeEEEeeCHhHHHHHH-HcCCceeeCCCCHHHHHhhhhhcccccccchHHHH
Confidence 69999999999999999999999999999999999974333222 3789999988543221100 01111
Q ss_pred HHHHHHHHhchhHHHHHHHHHHhhcCCCCCceEEEecCccchHHHHHHHhCCceEEEecchHHHHHHHHhhhcccccCCC
Q 046167 78 DSILLLNENCREPFRNWLVQMIKEQQPGDEIVCIIYDEVMYFAEASASQLNVQSIILRTSGAVTVVARLVLFQLKEEGYN 157 (424)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pDlvi~d~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (424)
.....+...+...++++++.+.+. +||+||+|.+.+++..+|+++|||++.+++++....... +.. .
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~-----~pDlvi~d~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~---~~~----~- 146 (401)
T cd03784 80 GALRLLRREAEAMLDDLVAAARDW-----GPDLVVADPLAFAGAVAAEALGIPAVRLLLGPDTPTSAF---PPP----L- 146 (401)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccc-----CCCEEEeCcHHHHHHHHHHHhCCCeEEeecccCCccccC---CCc----c-
Confidence 222233333344444444443222 899999999889999999999999999988764322110 000 0
Q ss_pred CCChh----------HHHHHHH-hhhccCCceEE------ecChhhh--hHHHHHHHHhccCCCeeeec-ccccCCCCCC
Q 046167 158 PLKES----------YVQLINN-AYSARTSSAVI------SNTIYCL--EESVLSQLQQYFKVPNFPIG-PLHKFAPSSN 217 (424)
Q Consensus 158 p~~~~----------~~~~~~~-~~~~~~~~~~~------~~~~~~l--~~~~~~~~~~~~~~~~~~vG-p~~~~~~~~~ 217 (424)
+..+. ....... ....+...++- ......+ -.+.+...+...+....++| ++.....
T Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~--- 223 (401)
T cd03784 147 GRANLRLYALLEAELWQDLLGAWLRARRRRLGLPPLSLLDGSDVPELYGFSPAVLPPPPDWPRFDLVTGYGFRDVPY--- 223 (401)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccCCCcEEEecCcccCCCCCCccccCcEeCCCCCCCCC---
Confidence 00000 0000000 11111111100 0000000 00111111222333455554 3332211
Q ss_pred CCCcccccccccccccCCCCeEEEEEeCCccc-CCHHHHHHHHHHHHhCCCCeEEEEcCCCCCCCcccccCchhHHHHhc
Q 046167 218 GSLLKEDTSCISWLNNQSPKSVIYVSLGSVAS-MDKKELEEMAWGLVNSKQPFLWVIRPRTNNAPEGIELLPKVLAEDVQ 296 (424)
Q Consensus 218 ~~~~~~~~~l~~~l~~~~~~~~I~vs~Gs~~~-~~~~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~ 296 (424)
....+.++..|++ +.+++|||++||... ....++..++++++..+.++||+++.... .. ...+
T Consensus 224 --~~~~~~~~~~~~~--~~~~~v~v~~Gs~~~~~~~~~~~~~~~a~~~~~~~~i~~~g~~~~---------~~---~~~~ 287 (401)
T cd03784 224 --NGPPPPELWLFLA--AGRPPVYVGFGSMVVRDPEALARLDVEAVATLGQRAILSLGWGGL---------GA---EDLP 287 (401)
T ss_pred --CCCCCHHHHHHHh--CCCCcEEEeCCCCcccCHHHHHHHHHHHHHHcCCeEEEEccCccc---------cc---cCCC
Confidence 1223344667776 357899999999986 34567788999999989999988854321 11 2356
Q ss_pred CCCceeeecchhhhhccccccccccccchhhHHHhhhcCCceeecCcccchhhHHHHHHhhhhcceecCc-ccchHHHHH
Q 046167 297 ENGYIVKWAPQKEVLSHVAVGGFWSHCGWNSTLESICEGVPMICMPFFEDQKVNARYLSHVWGVGLELEH-ELERGAVEK 375 (424)
Q Consensus 297 ~nv~v~~~ip~~~ll~~~~~~~~i~hgG~~t~~eal~~GvP~v~~P~~~DQ~~na~~~~~~~G~g~~~~~-~~~~~~L~~ 375 (424)
+|+++.+|+||.++|+++++ ||||||+||++||+++|+|+|++|+..||+.||+++++ +|+|+.+.. +++++.|.+
T Consensus 288 ~~v~~~~~~p~~~ll~~~d~--~I~hgG~~t~~eal~~GvP~v~~P~~~dQ~~~a~~~~~-~G~g~~l~~~~~~~~~l~~ 364 (401)
T cd03784 288 DNVRVVDFVPHDWLLPRCAA--VVHHGGAGTTAAALRAGVPQLVVPFFGDQPFWAARVAE-LGAGPALDPRELTAERLAA 364 (401)
T ss_pred CceEEeCCCCHHHHhhhhhe--eeecCCchhHHHHHHcCCCEEeeCCCCCcHHHHHHHHH-CCCCCCCCcccCCHHHHHH
Confidence 88899999999999988776 99999999999999999999999999999999999999 699999987 789999999
Q ss_pred HHHHHhcccchHHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHH
Q 046167 376 AVRKLTVDKEGEFLRQRAAQLKEEVELSTRKGGFSYNSLNELLD 419 (424)
Q Consensus 376 ai~~ll~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~a~~~~~~ 419 (424)
+|++++++ + +++++++.++++++. ++..++++.+.+
T Consensus 365 al~~~l~~---~-~~~~~~~~~~~~~~~----~g~~~~~~~ie~ 400 (401)
T cd03784 365 ALRRLLDP---P-SRRRAAALLRRIREE----DGVPSAADVIER 400 (401)
T ss_pred HHHHHhCH---H-HHHHHHHHHHHHHhc----cCHHHHHHHHhh
Confidence 99999987 4 566677777888766 777777766643
No 26
>COG1819 Glycosyl transferases, related to UDP-glucuronosyltransferase [Carbohydrate transport and metabolism / Signal transduction mechanisms]
Probab=100.00 E-value=3.1e-40 Score=316.84 Aligned_cols=372 Identities=20% Similarity=0.239 Sum_probs=243.2
Q ss_pred CceEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCCCCCCCCCCCCCceEEeCCCCCCCCccccccH---HHHHHHHH
Q 046167 8 RRRVVLVPSPHQGHINPMLQLGTILHSKGFSITVVHTQFNSPNPSNHPEFEFQSIPDGLMDVNISARNL---VDSILLLN 84 (424)
Q Consensus 8 ~~ril~~~~~~~GH~~p~~~la~~L~~~Gh~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~---~~~~~~~~ 84 (424)
+|||+++..|+.||++|+++||++|.++||+|+|+|++...+.... .|+.|..++.- ........+. ...+....
T Consensus 1 ~mkil~~~~~~~Ghv~p~~aL~~eL~~~gheV~~~~~~~~~~~ve~-ag~~f~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 78 (406)
T COG1819 1 RMKILFVVCGAYGHVNPCLALGKELRRRGHEVVFASTGKFKEFVEA-AGLAFVAYPIR-DSELATEDGKFAGVKSFRRLL 78 (406)
T ss_pred CceEEEEeccccccccchHHHHHHHHhcCCeEEEEeCHHHHHHHHH-hCcceeecccc-CChhhhhhhhhhccchhHHHh
Confidence 3799999999999999999999999999999999999744444333 56888888743 2211111111 11111122
Q ss_pred HhchhHHHHHHHHHHhhcCCCCCceEEEecCccchHHHHHHHhCCceEEEecchHHHHHHHH-hhhcccccCCCCCCh--
Q 046167 85 ENCREPFRNWLVQMIKEQQPGDEIVCIIYDEVMYFAEASASQLNVQSIILRTSGAVTVVARL-VLFQLKEEGYNPLKE-- 161 (424)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~pDlvi~d~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~-~~~~~~~~~~~p~~~-- 161 (424)
........++++-+.+. .||+++.|.-.. ...+++..++|++......+....... ..+.....+..+...
T Consensus 79 ~~~~~~~~~~~~~~~e~-----~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (406)
T COG1819 79 QQFKKLIRELLELLREL-----EPDLVVDDARLS-LGLAARLLGIPVVGINVAPYTPLPAAGLPLPPVGIAGKLPIPLYP 152 (406)
T ss_pred hhhhhhhHHHHHHHHhc-----chhhhhcchhhh-hhhhhhhcccchhhhhhhhccCCcccccCcccccccccccccccc
Confidence 22333344444445443 799999886444 448999999999887666544332211 111111010000000
Q ss_pred ------h--H--HHHHHH-hhhccCCceEEecChhhh----hHHHHHHHH------hccCCCeeeecccccCCCCCCCCC
Q 046167 162 ------S--Y--VQLINN-AYSARTSSAVISNTIYCL----EESVLSQLQ------QYFKVPNFPIGPLHKFAPSSNGSL 220 (424)
Q Consensus 162 ------~--~--~~~~~~-~~~~~~~~~~~~~~~~~l----~~~~~~~~~------~~~~~~~~~vGp~~~~~~~~~~~~ 220 (424)
+ . ...... .........+..+....+ ......+.. ..+|....++||+....
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~------- 225 (406)
T COG1819 153 LPPRLVRPLIFARSWLPKLVVRRNLGLELGLPNIRRLFASGPLLEIAYTDVLFPPGDRLPFIGPYIGPLLGEA------- 225 (406)
T ss_pred cChhhccccccchhhhhhhhhhhhccccccccchHHHhcCCCCccccccccccCCCCCCCCCcCccccccccc-------
Confidence 0 0 000000 000000000011000000 000000000 01112244455544332
Q ss_pred cccccccccccccCCCCeEEEEEeCCcccCCHHHHHHHHHHHHhCCCCeEEEEcCCCCCCCcccccCchhHHHHhcCCCc
Q 046167 221 LKEDTSCISWLNNQSPKSVIYVSLGSVASMDKKELEEMAWGLVNSKQPFLWVIRPRTNNAPEGIELLPKVLAEDVQENGY 300 (424)
Q Consensus 221 ~~~~~~l~~~l~~~~~~~~I~vs~Gs~~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~nv~ 300 (424)
..++..|. ..++++||+|+||.... .+++..+++++..++.++|+.... .. + -...+++|+.
T Consensus 226 ---~~~~~~~~--~~d~~~vyvslGt~~~~-~~l~~~~~~a~~~l~~~vi~~~~~-~~----------~-~~~~~p~n~~ 287 (406)
T COG1819 226 ---ANELPYWI--PADRPIVYVSLGTVGNA-VELLAIVLEALADLDVRVIVSLGG-AR----------D-TLVNVPDNVI 287 (406)
T ss_pred ---cccCcchh--cCCCCeEEEEcCCcccH-HHHHHHHHHHHhcCCcEEEEeccc-cc----------c-ccccCCCceE
Confidence 11122332 35688999999999976 899999999999999999988843 11 0 1124667889
Q ss_pred eeeecchhhhhccccccccccccchhhHHHhhhcCCceeecCcccchhhHHHHHHhhhhcceecCc-ccchHHHHHHHHH
Q 046167 301 IVKWAPQKEVLSHVAVGGFWSHCGWNSTLESICEGVPMICMPFFEDQKVNARYLSHVWGVGLELEH-ELERGAVEKAVRK 379 (424)
Q Consensus 301 v~~~ip~~~ll~~~~~~~~i~hgG~~t~~eal~~GvP~v~~P~~~DQ~~na~~~~~~~G~g~~~~~-~~~~~~L~~ai~~ 379 (424)
+.+|+||..+++++++ ||||||+|||+|||++|||+|++|...||+.||.++++ +|+|..+.. .++++.|+++|++
T Consensus 288 v~~~~p~~~~l~~ad~--vI~hGG~gtt~eaL~~gvP~vv~P~~~DQ~~nA~rve~-~G~G~~l~~~~l~~~~l~~av~~ 364 (406)
T COG1819 288 VADYVPQLELLPRADA--VIHHGGAGTTSEALYAGVPLVVIPDGADQPLNAERVEE-LGAGIALPFEELTEERLRAAVNE 364 (406)
T ss_pred EecCCCHHHHhhhcCE--EEecCCcchHHHHHHcCCCEEEecCCcchhHHHHHHHH-cCCceecCcccCCHHHHHHHHHH
Confidence 9999999999987777 99999999999999999999999999999999999999 799999998 8999999999999
Q ss_pred HhcccchHHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHh
Q 046167 380 LTVDKEGEFLRQRAAQLKEEVELSTRKGGFSYNSLNELLDLIN 422 (424)
Q Consensus 380 ll~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~a~~~~~~~~~ 422 (424)
+|+| +.|+++++++++.++++ ++..++++.+.+..+
T Consensus 365 vL~~---~~~~~~~~~~~~~~~~~----~g~~~~a~~le~~~~ 400 (406)
T COG1819 365 VLAD---DSYRRAAERLAEEFKEE----DGPAKAADLLEEFAR 400 (406)
T ss_pred HhcC---HHHHHHHHHHHHHhhhc----ccHHHHHHHHHHHHh
Confidence 9999 89999999999999998 777777777776554
No 27
>KOG1192 consensus UDP-glucuronosyl and UDP-glucosyl transferase [Carbohydrate transport and metabolism; Energy production and conversion]
Probab=100.00 E-value=8.4e-38 Score=312.87 Aligned_cols=372 Identities=33% Similarity=0.501 Sum_probs=245.7
Q ss_pred ceEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCCCCCCCCCC-CCC----------ceEEeCCCCCCCCcccc-ccH
Q 046167 9 RRVVLVPSPHQGHINPMLQLGTILHSKGFSITVVHTQFNSPNPSN-HPE----------FEFQSIPDGLMDVNISA-RNL 76 (424)
Q Consensus 9 ~ril~~~~~~~GH~~p~~~la~~L~~~Gh~V~~~~~~~~~~~~~~-~~g----------~~~~~~~~~~~~~~~~~-~~~ 76 (424)
.+++++++|+.||++|+..+|++|+++||+||++++......... ... +.+...+++++...... ...
T Consensus 6 ~~~il~~~p~~sH~~~~~~la~~L~~~gh~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (496)
T KOG1192|consen 6 AHNILVPFPGQSHLNPMLQLAKRLAERGHNVTVVTPSFNALKLSKSSKSKSIKKINPPPFEFLTIPDGLPEGWEDDDLDI 85 (496)
T ss_pred ceeEEEECCcccHHHHHHHHHHHHHHcCCceEEEEeechhcccCCcccceeeeeeecChHHhhhhhhhhccchHHHHHHH
Confidence 477888888999999999999999999999999998644333211 111 11111111222211110 011
Q ss_pred HHHHHHHHHhchhHHHHHHHHHHhhcCCCCCceEEEecCccchHHHHHHHhC-CceEEEecchHHHHHHHHhhhcccccC
Q 046167 77 VDSILLLNENCREPFRNWLVQMIKEQQPGDEIVCIIYDEVMYFAEASASQLN-VQSIILRTSGAVTVVARLVLFQLKEEG 155 (424)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pDlvi~d~~~~~~~~~A~~lg-iP~v~~~~~~~~~~~~~~~~~~~~~~~ 155 (424)
......+...|...+++....+...... ++|++|+|.+..+...+|.... ++..++............+.+..
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~d~~i~d~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~g~~~~~~---- 159 (496)
T KOG1192|consen 86 SESLLELNKTCEDLLRDPLEKLLLLKSE--KFDLIISDPFLGLFLLLAIPSFVIPLLSFPTSSAVLLALGLPSPLS---- 159 (496)
T ss_pred HHHHHHHHHHHHHHHhchHHHHHHhhcC--CccEEEechhhHHHHHhcccceEEEeecccCchHHHHhcCCcCccc----
Confidence 1124555566777777655554443322 4999999997666666776664 88888777766654443221111
Q ss_pred CCCCCh--------hH-----------HH-------------HHHH--hhhc----cCCceEEecC-hhhhhHHHHHHH-
Q 046167 156 YNPLKE--------SY-----------VQ-------------LINN--AYSA----RTSSAVISNT-IYCLEESVLSQL- 195 (424)
Q Consensus 156 ~~p~~~--------~~-----------~~-------------~~~~--~~~~----~~~~~~~~~~-~~~l~~~~~~~~- 195 (424)
+.|... .. .. .... .... .....++.++ +..++.......
T Consensus 160 ~~p~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ln~~~~~~~~ 239 (496)
T KOG1192|consen 160 YVPSPFSLSSGDDMSFPERVPNLIKKDLPSFLFSLSDDRKQDKISKELLGDILNWKPTASGIIVNASFIFLNSNPLLDFE 239 (496)
T ss_pred ccCcccCccccccCcHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhCCCcccccccHHHhhhcCeEEEEccCcccCCC
Confidence 222110 00 00 0000 0000 0111233333 444443332222
Q ss_pred HhccCCCeeeecccccCCCCCCCCCcccccccccccccCCCC--eEEEEEeCCcc---cCCHHHHHHHHHHHHhC-CCCe
Q 046167 196 QQYFKVPNFPIGPLHKFAPSSNGSLLKEDTSCISWLNNQSPK--SVIYVSLGSVA---SMDKKELEEMAWGLVNS-KQPF 269 (424)
Q Consensus 196 ~~~~~~~~~~vGp~~~~~~~~~~~~~~~~~~l~~~l~~~~~~--~~I~vs~Gs~~---~~~~~~~~~~~~a~~~~-~~~~ 269 (424)
.....++++++||+...... .+.. ....|++..+.. ++|||||||+. ..+.++...++.+++++ ++.+
T Consensus 240 ~~~~~~~v~~IG~l~~~~~~----~~~~--~~~~wl~~~~~~~~~vvyvSfGS~~~~~~lp~~~~~~l~~~l~~~~~~~F 313 (496)
T KOG1192|consen 240 PRPLLPKVIPIGPLHVKDSK----QKSP--LPLEWLDILDESRHSVVYISFGSMVNSADLPEEQKKELAKALESLQGVTF 313 (496)
T ss_pred CCCCCCCceEECcEEecCcc----cccc--ccHHHHHHHhhccCCeEEEECCcccccccCCHHHHHHHHHHHHhCCCceE
Confidence 22234679999999987321 1111 234566655554 89999999998 68999999999999999 7888
Q ss_pred EEEEcCCCCCCCcccccCchhHHHHhcCCCceeeecchhhh-hccccccccccccchhhHHHhhhcCCceeecCcccchh
Q 046167 270 LWVIRPRTNNAPEGIELLPKVLAEDVQENGYIVKWAPQKEV-LSHVAVGGFWSHCGWNSTLESICEGVPMICMPFFEDQK 348 (424)
Q Consensus 270 i~~~~~~~~~~~~~~~~l~~~~~~~~~~nv~v~~~ip~~~l-l~~~~~~~~i~hgG~~t~~eal~~GvP~v~~P~~~DQ~ 348 (424)
+|+++..... .+++++.++.++||.+.+|+||.++ |.|+++++||||||+|||+|++++|||+|++|+++||+
T Consensus 314 iW~~~~~~~~------~~~~~~~~~~~~nV~~~~W~PQ~~lll~H~~v~~FvTHgG~nSt~E~~~~GvP~v~~Plf~DQ~ 387 (496)
T KOG1192|consen 314 LWKYRPDDSI------YFPEGLPNRGRGNVVLSKWAPQNDLLLDHPAVGGFVTHGGWNSTLESIYSGVPMVCVPLFGDQP 387 (496)
T ss_pred EEEecCCcch------hhhhcCCCCCcCceEEecCCCcHHHhcCCCcCcEEEECCcccHHHHHHhcCCceecCCccccch
Confidence 9999754211 1233332112457888899999998 59999999999999999999999999999999999999
Q ss_pred hHHHHHHhhhhcceecCc-ccchHHHHHHHHHHhcccchHHHHHHHHHHHHHHHH
Q 046167 349 VNARYLSHVWGVGLELEH-ELERGAVEKAVRKLTVDKEGEFLRQRAAQLKEEVEL 402 (424)
Q Consensus 349 ~na~~~~~~~G~g~~~~~-~~~~~~L~~ai~~ll~~~~~~~~~~~a~~l~~~~~~ 402 (424)
.||++++++ |.+..+.. +++...+.+++..++++ ++|+++++++++.+++
T Consensus 388 ~Na~~i~~~-g~~~v~~~~~~~~~~~~~~~~~il~~---~~y~~~~~~l~~~~~~ 438 (496)
T KOG1192|consen 388 LNARLLVRH-GGGGVLDKRDLVSEELLEAIKEILEN---EEYKEAAKRLSEILRD 438 (496)
T ss_pred hHHHHHHhC-CCEEEEehhhcCcHHHHHHHHHHHcC---hHHHHHHHHHHHHHHc
Confidence 999999996 77777776 67766699999999999 8999999999998874
No 28
>PRK12446 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed
Probab=99.97 E-value=1.6e-28 Score=232.82 Aligned_cols=317 Identities=15% Similarity=0.133 Sum_probs=205.2
Q ss_pred eEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCCCCCCC-CCCCCCceEEeCCC-CCCCCccccccHHHHHHHHHHhc
Q 046167 10 RVVLVPSPHQGHINPMLQLGTILHSKGFSITVVHTQFNSPN-PSNHPEFEFQSIPD-GLMDVNISARNLVDSILLLNENC 87 (424)
Q Consensus 10 ril~~~~~~~GH~~p~~~la~~L~~~Gh~V~~~~~~~~~~~-~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 87 (424)
||+|.++|+.||++|.+++|++|+++||+|.|+++....+. .....|+.+..++. ++. .......+.......
T Consensus 3 ~i~~~~GGTGGHi~Pala~a~~l~~~g~~v~~vg~~~~~e~~l~~~~g~~~~~~~~~~l~-----~~~~~~~~~~~~~~~ 77 (352)
T PRK12446 3 KIVFTGGGSAGHVTPNLAIIPYLKEDNWDISYIGSHQGIEKTIIEKENIPYYSISSGKLR-----RYFDLKNIKDPFLVM 77 (352)
T ss_pred eEEEEcCCcHHHHHHHHHHHHHHHhCCCEEEEEECCCccccccCcccCCcEEEEeccCcC-----CCchHHHHHHHHHHH
Confidence 89999999999999999999999999999999998755443 22224788877762 221 111222333333322
Q ss_pred hhHHH--HHHHHHHhhcCCCCCceEEEecCcc--chHHHHHHHhCCceEEEecchHHHHHHHHhhhcccccCCCCCChhH
Q 046167 88 REPFR--NWLVQMIKEQQPGDEIVCIIYDEVM--YFAEASASQLNVQSIILRTSGAVTVVARLVLFQLKEEGYNPLKESY 163 (424)
Q Consensus 88 ~~~~~--~~~~~~~~~~~~~~~pDlvi~d~~~--~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 163 (424)
...++ .+++++ +||+||+...+ ..+..+|+.+++|++.+.............
T Consensus 78 ~~~~~~~~i~~~~--------kPdvvi~~Ggy~s~p~~~aa~~~~~p~~i~e~n~~~g~~nr~~---------------- 133 (352)
T PRK12446 78 KGVMDAYVRIRKL--------KPDVIFSKGGFVSVPVVIGGWLNRVPVLLHESDMTPGLANKIA---------------- 133 (352)
T ss_pred HHHHHHHHHHHhc--------CCCEEEecCchhhHHHHHHHHHcCCCEEEECCCCCccHHHHHH----------------
Confidence 22222 234444 99999998655 346789999999999988875444333211
Q ss_pred HHHHHHhhhccCCceEEecChhhhhHHHHHHHHhccC-CCeeeecccccCCCCCCCCCcccccccccccccCCCCeEEEE
Q 046167 164 VQLINNAYSARTSSAVISNTIYCLEESVLSQLQQYFK-VPNFPIGPLHKFAPSSNGSLLKEDTSCISWLNNQSPKSVIYV 242 (424)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~~vGp~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~I~v 242 (424)
.+.++.+ ..+|++.. ..++ .++.++|+.+.+.-. . .......+.+...+++++|+|
T Consensus 134 ---------~~~a~~v-~~~f~~~~--------~~~~~~k~~~tG~Pvr~~~~----~-~~~~~~~~~~~l~~~~~~iLv 190 (352)
T PRK12446 134 ---------LRFASKI-FVTFEEAA--------KHLPKEKVIYTGSPVREEVL----K-GNREKGLAFLGFSRKKPVITI 190 (352)
T ss_pred ---------HHhhCEE-EEEccchh--------hhCCCCCeEEECCcCCcccc----c-ccchHHHHhcCCCCCCcEEEE
Confidence 1112222 23333211 1232 357889976655221 0 001111122332355789999
Q ss_pred EeCCcccCCH-HHHHHHHHHHHhCCCCeEEEEcCCCCCCCcccccCchhHHHHhcCCCceeeec-c-hhhhhcccccccc
Q 046167 243 SLGSVASMDK-KELEEMAWGLVNSKQPFLWVIRPRTNNAPEGIELLPKVLAEDVQENGYIVKWA-P-QKEVLSHVAVGGF 319 (424)
Q Consensus 243 s~Gs~~~~~~-~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~nv~v~~~i-p-~~~ll~~~~~~~~ 319 (424)
..||.+.... +.+..++..+.. +..++|+++... +.+.. ... .++.+.+|+ + ..+++..+++ +
T Consensus 191 ~GGS~Ga~~in~~~~~~l~~l~~-~~~vv~~~G~~~---------~~~~~-~~~-~~~~~~~f~~~~m~~~~~~adl--v 256 (352)
T PRK12446 191 MGGSLGAKKINETVREALPELLL-KYQIVHLCGKGN---------LDDSL-QNK-EGYRQFEYVHGELPDILAITDF--V 256 (352)
T ss_pred ECCccchHHHHHHHHHHHHhhcc-CcEEEEEeCCch---------HHHHH-hhc-CCcEEecchhhhHHHHHHhCCE--E
Confidence 9999996332 333334444432 467888874321 11111 111 344566887 4 4568988887 9
Q ss_pred ccccchhhHHHhhhcCCceeecCcc-----cchhhHHHHHHhhhhcceecCc-ccchHHHHHHHHHHhcccchHHHHHHH
Q 046167 320 WSHCGWNSTLESICEGVPMICMPFF-----EDQKVNARYLSHVWGVGLELEH-ELERGAVEKAVRKLTVDKEGEFLRQRA 393 (424)
Q Consensus 320 i~hgG~~t~~eal~~GvP~v~~P~~-----~DQ~~na~~~~~~~G~g~~~~~-~~~~~~L~~ai~~ll~~~~~~~~~~~a 393 (424)
|||||.+|++|++++|+|+|++|.. ++|..||+.+++ .|+|..+.. +++++.|.+++.++++|+ +.+++++
T Consensus 257 Isr~G~~t~~E~~~~g~P~I~iP~~~~~~~~~Q~~Na~~l~~-~g~~~~l~~~~~~~~~l~~~l~~ll~~~--~~~~~~~ 333 (352)
T PRK12446 257 ISRAGSNAIFEFLTLQKPMLLIPLSKFASRGDQILNAESFER-QGYASVLYEEDVTVNSLIKHVEELSHNN--EKYKTAL 333 (352)
T ss_pred EECCChhHHHHHHHcCCCEEEEcCCCCCCCchHHHHHHHHHH-CCCEEEcchhcCCHHHHHHHHHHHHcCH--HHHHHHH
Confidence 9999999999999999999999974 589999999999 699999987 899999999999999883 3455444
Q ss_pred HH
Q 046167 394 AQ 395 (424)
Q Consensus 394 ~~ 395 (424)
++
T Consensus 334 ~~ 335 (352)
T PRK12446 334 KK 335 (352)
T ss_pred HH
Confidence 33
No 29
>PF13528 Glyco_trans_1_3: Glycosyl transferase family 1
Probab=99.95 E-value=9.4e-26 Score=212.90 Aligned_cols=304 Identities=16% Similarity=0.176 Sum_probs=190.3
Q ss_pred ceEEEEcCC-CccChHHHHHHHHHHHhCCCeEEEEeCCCCCCCCCCCCCceEEeCCCCCCCCccccccHHHH---HHHHH
Q 046167 9 RRVVLVPSP-HQGHINPMLQLGTILHSKGFSITVVHTQFNSPNPSNHPEFEFQSIPDGLMDVNISARNLVDS---ILLLN 84 (424)
Q Consensus 9 ~ril~~~~~-~~GH~~p~~~la~~L~~~Gh~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~---~~~~~ 84 (424)
|||+|...+ |.||+.+.++||++| |||+|++++......... ..+....++.-.........+.... ...+.
T Consensus 1 MkIl~~v~~~G~GH~~R~~~la~~L--rg~~v~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (318)
T PF13528_consen 1 MKILFYVQGHGLGHASRCLALARAL--RGHEVTFITSGPAPEFLK--PRFPVREIPGLGPIQENGRLDRWKTVRNNIRWL 76 (318)
T ss_pred CEEEEEeCCCCcCHHHHHHHHHHHH--ccCceEEEEcCCcHHHhc--cccCEEEccCceEeccCCccchHHHHHHHHHhh
Confidence 688888877 889999999999999 599999999974433322 1244444442111111111111111 11111
Q ss_pred HhchhHHHHHHHHHHhhcCCCCCceEEEecCccchHHHHHHHhCCceEEEecchHHHHHHHHhhhcccccCCCCCChhHH
Q 046167 85 ENCREPFRNWLVQMIKEQQPGDEIVCIIYDEVMYFAEASASQLNVQSIILRTSGAVTVVARLVLFQLKEEGYNPLKESYV 164 (424)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~pDlvi~d~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 164 (424)
......++++.+.+.+. +||+||+|. .+.+..+|+..|||++.+++........ ...+......
T Consensus 77 ~~~~~~~~~~~~~l~~~-----~pDlVIsD~-~~~~~~aa~~~giP~i~i~~~~~~~~~~----------~~~~~~~~~~ 140 (318)
T PF13528_consen 77 ARLARRIRREIRWLREF-----RPDLVISDF-YPLAALAARRAGIPVIVISNQYWFLHPN----------FWLPWDQDFG 140 (318)
T ss_pred HHHHHHHHHHHHHHHhc-----CCCEEEEcC-hHHHHHHHHhcCCCEEEEEehHHccccc----------CCcchhhhHH
Confidence 22334444455555444 899999995 6667789999999999998876533110 0111111112
Q ss_pred HHHHH-hhh--ccCCceEEecChhhhhHHHHHHHHhccCCCeeeecccccCCCCCCCCCcccccccccccccCCCCeEEE
Q 046167 165 QLINN-AYS--ARTSSAVISNTIYCLEESVLSQLQQYFKVPNFPIGPLHKFAPSSNGSLLKEDTSCISWLNNQSPKSVIY 241 (424)
Q Consensus 165 ~~~~~-~~~--~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vGp~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~I~ 241 (424)
..+.+ ... .......+..++. .. ......+.++||+..+... . .. ..+++.|+
T Consensus 141 ~~~~~~~~~~~~~~~~~~l~~~~~-~~--------~~~~~~~~~~~p~~~~~~~------~-------~~--~~~~~~iL 196 (318)
T PF13528_consen 141 RLIERYIDRYHFPPADRRLALSFY-PP--------LPPFFRVPFVGPIIRPEIR------E-------LP--PEDEPKIL 196 (318)
T ss_pred HHHHHhhhhccCCcccceecCCcc-cc--------ccccccccccCchhccccc------c-------cC--CCCCCEEE
Confidence 22222 111 2233333333332 11 0011236677877754221 0 00 12456899
Q ss_pred EEeCCcccCCHHHHHHHHHHHHhCC-CCeEEEEcCCCCCCCcccccCchhHHHHhcCCCceeeec--chhhhhccccccc
Q 046167 242 VSLGSVASMDKKELEEMAWGLVNSK-QPFLWVIRPRTNNAPEGIELLPKVLAEDVQENGYIVKWA--PQKEVLSHVAVGG 318 (424)
Q Consensus 242 vs~Gs~~~~~~~~~~~~~~a~~~~~-~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~nv~v~~~i--p~~~ll~~~~~~~ 318 (424)
|++|+.... .++++++..+ ..+++. +... .+...+|+.+.++. +..++|..+++
T Consensus 197 v~~gg~~~~------~~~~~l~~~~~~~~~v~-g~~~--------------~~~~~~ni~~~~~~~~~~~~~m~~ad~-- 253 (318)
T PF13528_consen 197 VYFGGGGPG------DLIEALKALPDYQFIVF-GPNA--------------ADPRPGNIHVRPFSTPDFAELMAAADL-- 253 (318)
T ss_pred EEeCCCcHH------HHHHHHHhCCCCeEEEE-cCCc--------------ccccCCCEEEeecChHHHHHHHHhCCE--
Confidence 999988742 5567777766 455544 3221 01125788888876 44568977766
Q ss_pred cccccchhhHHHhhhcCCceeecCc--ccchhhHHHHHHhhhhcceecCc-ccchHHHHHHHHHH
Q 046167 319 FWSHCGWNSTLESICEGVPMICMPF--FEDQKVNARYLSHVWGVGLELEH-ELERGAVEKAVRKL 380 (424)
Q Consensus 319 ~i~hgG~~t~~eal~~GvP~v~~P~--~~DQ~~na~~~~~~~G~g~~~~~-~~~~~~L~~ai~~l 380 (424)
+|+|||+||++|++++|+|+|++|. ..||..||+++++ +|+|..++. +++++.|+++|+++
T Consensus 254 vIs~~G~~t~~Ea~~~g~P~l~ip~~~~~EQ~~~a~~l~~-~G~~~~~~~~~~~~~~l~~~l~~~ 317 (318)
T PF13528_consen 254 VISKGGYTTISEALALGKPALVIPRPGQDEQEYNARKLEE-LGLGIVLSQEDLTPERLAEFLERL 317 (318)
T ss_pred EEECCCHHHHHHHHHcCCCEEEEeCCCCchHHHHHHHHHH-CCCeEEcccccCCHHHHHHHHhcC
Confidence 9999999999999999999999998 7899999999999 799999987 89999999999875
No 30
>COG0707 MurG UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase [Cell envelope biogenesis, outer membrane]
Probab=99.95 E-value=4.5e-25 Score=206.82 Aligned_cols=307 Identities=18% Similarity=0.207 Sum_probs=198.4
Q ss_pred ceEEEEcCCCccChHHHHHHHHHHHhCCC-eEEEEeCCCCCCC-CCCCCCceEEeCCCCCCCCccccccHHHHHHHHHHh
Q 046167 9 RRVVLVPSPHQGHINPMLQLGTILHSKGF-SITVVHTQFNSPN-PSNHPEFEFQSIPDGLMDVNISARNLVDSILLLNEN 86 (424)
Q Consensus 9 ~ril~~~~~~~GH~~p~~~la~~L~~~Gh-~V~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (424)
++|++..+++.||++|.++|+++|.++|+ +|.++.+....+. .....++.+..++.+-..+ ......+...+..
T Consensus 1 ~~ivl~~gGTGGHv~pAlAl~~~l~~~g~~~v~~~~~~~~~e~~l~~~~~~~~~~I~~~~~~~----~~~~~~~~~~~~~ 76 (357)
T COG0707 1 KKIVLTAGGTGGHVFPALALAEELAKRGWEQVIVLGTGDGLEAFLVKQYGIEFELIPSGGLRR----KGSLKLLKAPFKL 76 (357)
T ss_pred CeEEEEeCCCccchhHHHHHHHHHHhhCccEEEEecccccceeeeccccCceEEEEecccccc----cCcHHHHHHHHHH
Confidence 47889999999999999999999999999 5888866533333 3333588888887443322 2222233322333
Q ss_pred chhH--HHHHHHHHHhhcCCCCCceEEEecCcc--chHHHHHHHhCCceEEEecchHHHHHHHHhhhcccccCCCCCChh
Q 046167 87 CREP--FRNWLVQMIKEQQPGDEIVCIIYDEVM--YFAEASASQLNVQSIILRTSGAVTVVARLVLFQLKEEGYNPLKES 162 (424)
Q Consensus 87 ~~~~--~~~~~~~~~~~~~~~~~pDlvi~d~~~--~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 162 (424)
+... .+.+++++ +||+|++...+ ..+..+|..+|||++++.+...........
T Consensus 77 ~~~~~~a~~il~~~--------kPd~vig~Ggyvs~P~~~Aa~~~~iPv~ihEqn~~~G~ank~~--------------- 133 (357)
T COG0707 77 LKGVLQARKILKKL--------KPDVVIGTGGYVSGPVGIAAKLLGIPVIIHEQNAVPGLANKIL--------------- 133 (357)
T ss_pred HHHHHHHHHHHHHc--------CCCEEEecCCccccHHHHHHHhCCCCEEEEecCCCcchhHHHh---------------
Confidence 3332 33466666 99999997656 555679999999999998876544433211
Q ss_pred HHHHHHHhhhccCCceEEecChhhhhHHHHHHHHhcc-CCCeeeec-ccccCCCCCCCCCcccccccccccccCCCCeEE
Q 046167 163 YVQLINNAYSARTSSAVISNTIYCLEESVLSQLQQYF-KVPNFPIG-PLHKFAPSSNGSLLKEDTSCISWLNNQSPKSVI 240 (424)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~vG-p~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~I 240 (424)
.+.++.+ ..+|+..+ ... +..++.+| |+...... .+.. ...+ +...++++|
T Consensus 134 ----------~~~a~~V-~~~f~~~~--------~~~~~~~~~~tG~Pvr~~~~~-----~~~~--~~~~-~~~~~~~~i 186 (357)
T COG0707 134 ----------SKFAKKV-ASAFPKLE--------AGVKPENVVVTGIPVRPEFEE-----LPAA--EVRK-DGRLDKKTI 186 (357)
T ss_pred ----------HHhhcee-eecccccc--------ccCCCCceEEecCcccHHhhc-----cchh--hhhh-hccCCCcEE
Confidence 1112222 22333211 001 12377777 44332110 0110 1111 112267899
Q ss_pred EEEeCCcccCCHHHHHHHHHHHHhCC--CCeEEEEcCCCCCCCcccccCchhHHHHhc-CC-Cceeeecchh-hhhcccc
Q 046167 241 YVSLGSVASMDKKELEEMAWGLVNSK--QPFLWVIRPRTNNAPEGIELLPKVLAEDVQ-EN-GYIVKWAPQK-EVLSHVA 315 (424)
Q Consensus 241 ~vs~Gs~~~~~~~~~~~~~~a~~~~~--~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~-~n-v~v~~~ip~~-~ll~~~~ 315 (424)
+|+-||++. ..+-+.+.+++..+. ..+++.++.. . .+....... .+ +.+.+|+++. .+|+.+|
T Consensus 187 lV~GGS~Ga--~~ln~~v~~~~~~l~~~~~v~~~~G~~---------~-~~~~~~~~~~~~~~~v~~f~~dm~~~~~~AD 254 (357)
T COG0707 187 LVTGGSQGA--KALNDLVPEALAKLANRIQVIHQTGKN---------D-LEELKSAYNELGVVRVLPFIDDMAALLAAAD 254 (357)
T ss_pred EEECCcchh--HHHHHHHHHHHHHhhhCeEEEEEcCcc---------h-HHHHHHHHhhcCcEEEeeHHhhHHHHHHhcc
Confidence 999999996 223333444444443 5666666322 1 122222222 23 5666888765 5897777
Q ss_pred ccccccccchhhHHHhhhcCCceeecCc-c---cchhhHHHHHHhhhhcceecCc-ccchHHHHHHHHHHhccc
Q 046167 316 VGGFWSHCGWNSTLESICEGVPMICMPF-F---EDQKVNARYLSHVWGVGLELEH-ELERGAVEKAVRKLTVDK 384 (424)
Q Consensus 316 ~~~~i~hgG~~t~~eal~~GvP~v~~P~-~---~DQ~~na~~~~~~~G~g~~~~~-~~~~~~L~~ai~~ll~~~ 384 (424)
+ +||++|.+|+.|++++|+|+|++|. . ++|..||+.++++ |.|..++. +++++.|.+.|.++++++
T Consensus 255 L--vIsRaGa~Ti~E~~a~g~P~IliP~p~~~~~~Q~~NA~~l~~~-gaa~~i~~~~lt~~~l~~~i~~l~~~~ 325 (357)
T COG0707 255 L--VISRAGALTIAELLALGVPAILVPYPPGADGHQEYNAKFLEKA-GAALVIRQSELTPEKLAELILRLLSNP 325 (357)
T ss_pred E--EEeCCcccHHHHHHHhCCCEEEeCCCCCccchHHHHHHHHHhC-CCEEEeccccCCHHHHHHHHHHHhcCH
Confidence 7 9999999999999999999999996 3 4899999999995 99999999 899999999999999983
No 31
>TIGR00661 MJ1255 conserved hypothetical protein. This model represents nearly the full length of MJ1255 from Methanococcus jannaschii and of an unpublished protein from Vibrio cholerae, as well as the C-terminal half of a protein from Methanobacterium thermoautotrophicum. A small region (~50 amino acids) within the domain appears related to a family of sugar transferases.
Probab=99.91 E-value=4.7e-23 Score=194.19 Aligned_cols=301 Identities=17% Similarity=0.169 Sum_probs=167.3
Q ss_pred eEEEEcCCCc-cChHHHHHHHHHHHhCCCeEEEEeCCCCCCCCCCCCCce-EEeCCCCCCCCc-cccccHHHHHHHHHHh
Q 046167 10 RVVLVPSPHQ-GHINPMLQLGTILHSKGFSITVVHTQFNSPNPSNHPEFE-FQSIPDGLMDVN-ISARNLVDSILLLNEN 86 (424)
Q Consensus 10 ril~~~~~~~-GH~~p~~~la~~L~~~Gh~V~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 86 (424)
||++...+++ ||+.|.++||++|++ ||+|+|+++........ ..++. +..+| ++.... ....+....+......
T Consensus 1 ril~~~~g~G~GH~~r~~ala~~L~~-g~ev~~~~~~~~~~~~~-~~~~~~~~~~p-~~~~~~~~~~~~~~~~l~~~~~~ 77 (321)
T TIGR00661 1 KILYSVCGEGFGHTTRSVAIGEALKN-DYEVSYIASGRSKNYIS-KYGFKVFETFP-GIKLKGEDGKVNIVKTLRNKEYS 77 (321)
T ss_pred CEEEEEeccCccHHHHHHHHHHHHhC-CCeEEEEEcCCHHHhhh-hhcCcceeccC-CceEeecCCcCcHHHHHHhhccc
Confidence 5777776655 999999999999999 99999998765222222 13443 33322 111100 0001111111110011
Q ss_pred chhHHHHHHHHHHhhcCCCCCceEEEecCccchHHHHHHHhCCceEEEecchHHHHHHHHhhhcccccCCCCCChhHHHH
Q 046167 87 CREPFRNWLVQMIKEQQPGDEIVCIIYDEVMYFAEASASQLNVQSIILRTSGAVTVVARLVLFQLKEEGYNPLKESYVQL 166 (424)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~pDlvi~d~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 166 (424)
....+.+.++.+.+. +||+||+| +.+.+..+|+.+|||++.+.++.... .+.. . . ....
T Consensus 78 ~~~~~~~~~~~l~~~-----~pDlVi~d-~~~~~~~aA~~~~iP~i~i~~q~~~~------~~~~-----~--~--~~~~ 136 (321)
T TIGR00661 78 PKKAIRREINIIREY-----NPDLIISD-FEYSTVVAAKLLKIPVICISNQNYTR------YPLK-----T--D--LIVY 136 (321)
T ss_pred cHHHHHHHHHHHHhc-----CCCEEEEC-CchHHHHHHHhcCCCEEEEecchhhc------CCcc-----c--c--hhHH
Confidence 112333334444333 89999999 46677889999999999877643211 1110 0 0 0111
Q ss_pred HH-H-hhhc-cCCceEEecChhhhhHHHHHHHHhccCCCee--eecccccCCCCCCCCCcccccccccccccCCCCeEEE
Q 046167 167 IN-N-AYSA-RTSSAVISNTIYCLEESVLSQLQQYFKVPNF--PIGPLHKFAPSSNGSLLKEDTSCISWLNNQSPKSVIY 241 (424)
Q Consensus 167 ~~-~-~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~--~vGp~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~I~ 241 (424)
+. + .... ..........+.... ... +++. ..+|... ....++. ..+++.|+
T Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~-p~~~~~~~~~~~~-------------~~~~~~~--~~~~~~iL 192 (321)
T TIGR00661 137 PTMAALRIFNERCERFIVPDYPFPY--------TIC-PKIIKNMEGPLIR-------------YDVDDVD--NYGEDYIL 192 (321)
T ss_pred HHHHHHHHhccccceEeeecCCCCC--------CCC-ccccccCCCcccc-------------hhhhccc--cCCCCcEE
Confidence 11 1 1111 111222222211100 000 0000 0001110 0111222 12355777
Q ss_pred EEeCCcccCCHHHHHHHHHHHHhCCCCeEEEEcCCCCCCCcccccCchhHHHHhcCCCceeeecc--hhhhhcccccccc
Q 046167 242 VSLGSVASMDKKELEEMAWGLVNSKQPFLWVIRPRTNNAPEGIELLPKVLAEDVQENGYIVKWAP--QKEVLSHVAVGGF 319 (424)
Q Consensus 242 vs~Gs~~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~nv~v~~~ip--~~~ll~~~~~~~~ 319 (424)
|.+|+... ..+++++.+.+. +.+++.... ...+ ..++|+.+.+|.| ..++|..+++ +
T Consensus 193 v~~g~~~~------~~l~~~l~~~~~-~~~i~~~~~--------~~~~----~~~~~v~~~~~~~~~~~~~l~~ad~--v 251 (321)
T TIGR00661 193 VYIGFEYR------YKILELLGKIAN-VKFVCYSYE--------VAKN----SYNENVEIRRITTDNFKELIKNAEL--V 251 (321)
T ss_pred EECCcCCH------HHHHHHHHhCCC-eEEEEeCCC--------CCcc----ccCCCEEEEECChHHHHHHHHhCCE--E
Confidence 87777542 234566766653 333432211 1111 2357888899997 3457766666 9
Q ss_pred ccccchhhHHHhhhcCCceeecCccc--chhhHHHHHHhhhhcceecCc-ccchHHHHHHHHHHhcc
Q 046167 320 WSHCGWNSTLESICEGVPMICMPFFE--DQKVNARYLSHVWGVGLELEH-ELERGAVEKAVRKLTVD 383 (424)
Q Consensus 320 i~hgG~~t~~eal~~GvP~v~~P~~~--DQ~~na~~~~~~~G~g~~~~~-~~~~~~L~~ai~~ll~~ 383 (424)
|||||.+|++||+++|+|++++|..+ ||..||+.+++ +|+|+.++. ++ ++.+++.++++|
T Consensus 252 I~~~G~~t~~Ea~~~g~P~l~ip~~~~~eQ~~na~~l~~-~g~~~~l~~~~~---~~~~~~~~~~~~ 314 (321)
T TIGR00661 252 ITHGGFSLISEALSLGKPLIVIPDLGQFEQGNNAVKLED-LGCGIALEYKEL---RLLEAILDIRNM 314 (321)
T ss_pred EECCChHHHHHHHHcCCCEEEEcCCCcccHHHHHHHHHH-CCCEEEcChhhH---HHHHHHHhcccc
Confidence 99999999999999999999999855 89999999999 699999987 44 667777777777
No 32
>PRK00726 murG undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase; Provisional
Probab=99.89 E-value=3.6e-21 Score=184.65 Aligned_cols=343 Identities=15% Similarity=0.133 Sum_probs=200.5
Q ss_pred ceEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCCCCC-CCCCCCCCceEEeCCCCCCCCccccccHHHHHHHHHHhc
Q 046167 9 RRVVLVPSPHQGHINPMLQLGTILHSKGFSITVVHTQFNS-PNPSNHPEFEFQSIPDGLMDVNISARNLVDSILLLNENC 87 (424)
Q Consensus 9 ~ril~~~~~~~GH~~p~~~la~~L~~~Gh~V~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (424)
|||+|.+.+..||...++.||++|+++||+|++++.+... .......|+++..++..-.. ..+....+......
T Consensus 2 ~~i~i~~~g~gG~~~~~~~la~~L~~~g~ev~vv~~~~~~~~~~~~~~g~~~~~~~~~~~~----~~~~~~~l~~~~~~- 76 (357)
T PRK00726 2 KKILLAGGGTGGHVFPALALAEELKKRGWEVLYLGTARGMEARLVPKAGIEFHFIPSGGLR----RKGSLANLKAPFKL- 76 (357)
T ss_pred cEEEEEcCcchHhhhHHHHHHHHHHhCCCEEEEEECCCchhhhccccCCCcEEEEeccCcC----CCChHHHHHHHHHH-
Confidence 5899999998999999999999999999999999986422 11112247777766521100 11212211111111
Q ss_pred hhHHHHHHHHHHhhcCCCCCceEEEecCcc--chHHHHHHHhCCceEEEecchHHHHHHHHhhhcccccCCCCCChhHHH
Q 046167 88 REPFRNWLVQMIKEQQPGDEIVCIIYDEVM--YFAEASASQLNVQSIILRTSGAVTVVARLVLFQLKEEGYNPLKESYVQ 165 (424)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~pDlvi~d~~~--~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 165 (424)
...+..+.+.+++. +||+|++.... ..+..+++..++|++.+........ .+
T Consensus 77 ~~~~~~~~~~ik~~-----~pDvv~~~~~~~~~~~~~~~~~~~~p~v~~~~~~~~~~---------------------~~ 130 (357)
T PRK00726 77 LKGVLQARKILKRF-----KPDVVVGFGGYVSGPGGLAARLLGIPLVIHEQNAVPGL---------------------AN 130 (357)
T ss_pred HHHHHHHHHHHHhc-----CCCEEEECCCcchhHHHHHHHHcCCCEEEEcCCCCccH---------------------HH
Confidence 11111222223222 89999999633 4455678888999987543211000 00
Q ss_pred HHHHhhhccCCceEEecChhhhhHHHHHHHHhccCCCeeeecccccCCCCCCCCCcccccccccccccCCCCeEEEEEeC
Q 046167 166 LINNAYSARTSSAVISNTIYCLEESVLSQLQQYFKVPNFPIGPLHKFAPSSNGSLLKEDTSCISWLNNQSPKSVIYVSLG 245 (424)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vGp~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~I~vs~G 245 (424)
.+ . ...++.++..+ ++. +. ..-+.+++++|+....... .....-.+ +...++.++|++..|
T Consensus 131 r~--~--~~~~d~ii~~~-~~~----~~---~~~~~~i~vi~n~v~~~~~------~~~~~~~~-~~~~~~~~~i~~~gg 191 (357)
T PRK00726 131 KL--L--ARFAKKVATAF-PGA----FP---EFFKPKAVVTGNPVREEIL------ALAAPPAR-LAGREGKPTLLVVGG 191 (357)
T ss_pred HH--H--HHHhchheECc-hhh----hh---ccCCCCEEEECCCCChHhh------cccchhhh-ccCCCCCeEEEEECC
Confidence 00 0 11233333322 111 10 1112457878765543211 00000011 121223456666545
Q ss_pred CcccCCHHHHHHHHHHHHhCCC--CeEEEEcCCCCCCCcccccCchhHHHH--hcCCCceeeecc-hhhhhccccccccc
Q 046167 246 SVASMDKKELEEMAWGLVNSKQ--PFLWVIRPRTNNAPEGIELLPKVLAED--VQENGYIVKWAP-QKEVLSHVAVGGFW 320 (424)
Q Consensus 246 s~~~~~~~~~~~~~~a~~~~~~--~~i~~~~~~~~~~~~~~~~l~~~~~~~--~~~nv~v~~~ip-~~~ll~~~~~~~~i 320 (424)
+.. ...+...+.+++.++.. .+++.++.+. .+.+.+. .+-++.+.+|+. ..+++..+++ +|
T Consensus 192 ~~~--~~~~~~~l~~a~~~~~~~~~~~~~~G~g~----------~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~d~--~i 257 (357)
T PRK00726 192 SQG--ARVLNEAVPEALALLPEALQVIHQTGKGD----------LEEVRAAYAAGINAEVVPFIDDMAAAYAAADL--VI 257 (357)
T ss_pred cHh--HHHHHHHHHHHHHHhhhCcEEEEEcCCCc----------HHHHHHHhhcCCcEEEeehHhhHHHHHHhCCE--EE
Confidence 433 22333334466655433 3344443221 1222211 222467789984 4679977777 99
Q ss_pred cccchhhHHHhhhcCCceeecCc----ccchhhHHHHHHhhhhcceecCc-ccchHHHHHHHHHHhcccchHHHHHHHHH
Q 046167 321 SHCGWNSTLESICEGVPMICMPF----FEDQKVNARYLSHVWGVGLELEH-ELERGAVEKAVRKLTVDKEGEFLRQRAAQ 395 (424)
Q Consensus 321 ~hgG~~t~~eal~~GvP~v~~P~----~~DQ~~na~~~~~~~G~g~~~~~-~~~~~~L~~ai~~ll~~~~~~~~~~~a~~ 395 (424)
+|+|.++++||+++|+|+|++|. .++|..|+..+.+ .|.|..++. +++++.|+++|.++++| +..+++..+
T Consensus 258 ~~~g~~~~~Ea~~~g~Pvv~~~~~~~~~~~~~~~~~~i~~-~~~g~~~~~~~~~~~~l~~~i~~ll~~---~~~~~~~~~ 333 (357)
T PRK00726 258 CRAGASTVAELAAAGLPAILVPLPHAADDHQTANARALVD-AGAALLIPQSDLTPEKLAEKLLELLSD---PERLEAMAE 333 (357)
T ss_pred ECCCHHHHHHHHHhCCCEEEecCCCCCcCcHHHHHHHHHH-CCCEEEEEcccCCHHHHHHHHHHHHcC---HHHHHHHHH
Confidence 99999999999999999999997 4689999999999 599999987 67899999999999999 556555555
Q ss_pred HHHHHHHHhhcCCCcHHHHHHHHHHHhc
Q 046167 396 LKEEVELSTRKGGFSYNSLNELLDLINK 423 (424)
Q Consensus 396 l~~~~~~~~~~~g~~~~a~~~~~~~~~~ 423 (424)
-+.+..+. .+..+.++.+.+.+++
T Consensus 334 ~~~~~~~~----~~~~~~~~~~~~~~~~ 357 (357)
T PRK00726 334 AARALGKP----DAAERLADLIEELARK 357 (357)
T ss_pred HHHhcCCc----CHHHHHHHHHHHHhhC
Confidence 44444333 6677777777776653
No 33
>cd03785 GT1_MurG MurG is an N-acetylglucosaminyltransferase, the last enzyme involved in the intracellular phase of peptidoglycan biosynthesis. It transfers N-acetyl-D-glucosamine (GlcNAc) from UDP-GlcNAc to the C4 hydroxyl of a lipid-linked N-acetylmuramoyl pentapeptide (NAM). The resulting disaccharide is then transported across the cell membrane, where it is polymerized into NAG-NAM cell-wall repeat structure. MurG belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains, each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=99.87 E-value=4.5e-20 Score=176.61 Aligned_cols=310 Identities=17% Similarity=0.144 Sum_probs=181.6
Q ss_pred eEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCCCCCCC-CCCCCCceEEeCCCCCCCCccccccHHHHHHHHHHh--
Q 046167 10 RVVLVPSPHQGHINPMLQLGTILHSKGFSITVVHTQFNSPN-PSNHPEFEFQSIPDGLMDVNISARNLVDSILLLNEN-- 86 (424)
Q Consensus 10 ril~~~~~~~GH~~p~~~la~~L~~~Gh~V~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 86 (424)
||++.+.++.||....+.||++|.++||+|++++....... .....|+++..++..-.. .......+..+...
T Consensus 1 ~~~~~~~~~gG~~~~~~~la~~l~~~G~ev~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~ 76 (350)
T cd03785 1 RILIAGGGTGGHIFPALALAEELRERGAEVLFLGTKRGLEARLVPKAGIPLHTIPVGGLR----RKGSLKKLKAPFKLLK 76 (350)
T ss_pred CEEEEecCchhhhhHHHHHHHHHHhCCCEEEEEECCCcchhhcccccCCceEEEEecCcC----CCChHHHHHHHHHHHH
Confidence 68999999999999999999999999999999988533222 111235666666521100 11112222211111
Q ss_pred chhHHHHHHHHHHhhcCCCCCceEEEecCcc--chHHHHHHHhCCceEEEecchHHHHHHHHhhhcccccCCCCCChhHH
Q 046167 87 CREPFRNWLVQMIKEQQPGDEIVCIIYDEVM--YFAEASASQLNVQSIILRTSGAVTVVARLVLFQLKEEGYNPLKESYV 164 (424)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~pDlvi~d~~~--~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 164 (424)
....+..++++. +||+|+++... ..+..+|+..++|++..........
T Consensus 77 ~~~~~~~~i~~~--------~pDvI~~~~~~~~~~~~~~a~~~~~p~v~~~~~~~~~~---------------------- 126 (350)
T cd03785 77 GVLQARKILKKF--------KPDVVVGFGGYVSGPVGLAAKLLGIPLVIHEQNAVPGL---------------------- 126 (350)
T ss_pred HHHHHHHHHHhc--------CCCEEEECCCCcchHHHHHHHHhCCCEEEEcCCCCccH----------------------
Confidence 111222333333 89999997533 4456788899999987543221100
Q ss_pred HHHHHhhhccCCceEEecChhhhhHHHHHHHHhccCCCeeeecccccCCCCCCCCCcccccccccccccCCCCeEEEEEe
Q 046167 165 QLINNAYSARTSSAVISNTIYCLEESVLSQLQQYFKVPNFPIGPLHKFAPSSNGSLLKEDTSCISWLNNQSPKSVIYVSL 244 (424)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vGp~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~I~vs~ 244 (424)
..+. ....++.++..+-...+. .-+.++.++|+....... .+.+ . ...+...+++++|++..
T Consensus 127 --~~~~-~~~~~~~vi~~s~~~~~~--------~~~~~~~~i~n~v~~~~~-----~~~~-~-~~~~~~~~~~~~i~~~~ 188 (350)
T cd03785 127 --ANRL-LARFADRVALSFPETAKY--------FPKDKAVVTGNPVREEIL-----ALDR-E-RARLGLRPGKPTLLVFG 188 (350)
T ss_pred --HHHH-HHHhhCEEEEcchhhhhc--------CCCCcEEEECCCCchHHh-----hhhh-h-HHhcCCCCCCeEEEEEC
Confidence 0010 012245555543221111 112457777764432110 0000 0 11222223445566655
Q ss_pred CCcccCCHHHHHHHHHHHHhC---CCCeEEEEcCCCCCCCcccccCchhHHHHhcCCCceeeec-chhhhhccccccccc
Q 046167 245 GSVASMDKKELEEMAWGLVNS---KQPFLWVIRPRTNNAPEGIELLPKVLAEDVQENGYIVKWA-PQKEVLSHVAVGGFW 320 (424)
Q Consensus 245 Gs~~~~~~~~~~~~~~a~~~~---~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~nv~v~~~i-p~~~ll~~~~~~~~i 320 (424)
|+... ......+.+++..+ +..+++.++.+. .+.+.+...+ ..+|+++.+|+ +...+|+.+++ +|
T Consensus 189 g~~~~--~~~~~~l~~a~~~l~~~~~~~~~i~G~g~------~~~l~~~~~~-~~~~v~~~g~~~~~~~~l~~ad~--~v 257 (350)
T cd03785 189 GSQGA--RAINEAVPEALAELLRKRLQVIHQTGKGD------LEEVKKAYEE-LGVNYEVFPFIDDMAAAYAAADL--VI 257 (350)
T ss_pred CcHhH--HHHHHHHHHHHHHhhccCeEEEEEcCCcc------HHHHHHHHhc-cCCCeEEeehhhhHHHHHHhcCE--EE
Confidence 55542 22222333444333 333444553220 1122222211 14688999998 45669977777 99
Q ss_pred cccchhhHHHhhhcCCceeecCc----ccchhhHHHHHHhhhhcceecCc-ccchHHHHHHHHHHhcc
Q 046167 321 SHCGWNSTLESICEGVPMICMPF----FEDQKVNARYLSHVWGVGLELEH-ELERGAVEKAVRKLTVD 383 (424)
Q Consensus 321 ~hgG~~t~~eal~~GvP~v~~P~----~~DQ~~na~~~~~~~G~g~~~~~-~~~~~~L~~ai~~ll~~ 383 (424)
+++|.+|+.||+++|+|+|++|. ..+|..|+..+.+ .|.|..++. +.++++|.++|+++++|
T Consensus 258 ~~sg~~t~~Eam~~G~Pvv~~~~~~~~~~~~~~~~~~l~~-~g~g~~v~~~~~~~~~l~~~i~~ll~~ 324 (350)
T cd03785 258 SRAGASTVAELAALGLPAILIPLPYAADDHQTANARALVK-AGAAVLIPQEELTPERLAAALLELLSD 324 (350)
T ss_pred ECCCHhHHHHHHHhCCCEEEeecCCCCCCcHHHhHHHHHh-CCCEEEEecCCCCHHHHHHHHHHHhcC
Confidence 99999999999999999999985 4679999999999 599999987 46999999999999988
No 34
>TIGR01133 murG undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase. RL J Bacteriol 1993 Mar;175(6):1841-3
Probab=99.82 E-value=6.8e-18 Score=161.38 Aligned_cols=307 Identities=20% Similarity=0.167 Sum_probs=167.8
Q ss_pred ceEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCCCCCCC-CCCCCCceEEeCCCCCCCCccccccHHHHHHHHHHhc
Q 046167 9 RRVVLVPSPHQGHINPMLQLGTILHSKGFSITVVHTQFNSPN-PSNHPEFEFQSIPDGLMDVNISARNLVDSILLLNENC 87 (424)
Q Consensus 9 ~ril~~~~~~~GH~~p~~~la~~L~~~Gh~V~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (424)
|||+|++++..||+.....||++|.++||+|++++.+..... .....|+++..++..-. ...+....+......
T Consensus 1 ~~i~~~~g~~~g~~~~~~~La~~L~~~g~eV~vv~~~~~~~~~~~~~~g~~~~~i~~~~~----~~~~~~~~l~~~~~~- 75 (348)
T TIGR01133 1 KKVVLAAGGTGGHIFPALAVAEELIKRGVEVLWLGTKRGLEKRLVPKAGIEFYFIPVGGL----RRKGSFRLIKTPLKL- 75 (348)
T ss_pred CeEEEEeCccHHHHhHHHHHHHHHHhCCCEEEEEeCCCcchhcccccCCCceEEEeccCc----CCCChHHHHHHHHHH-
Confidence 489999999999999888999999999999999987533221 11124677766652110 111222222222111
Q ss_pred hhHHHHHHHHHHhhcCCCCCceEEEecCcc--chHHHHHHHhCCceEEEecchHHHHHHHHhhhcccccCCCCCChhHHH
Q 046167 88 REPFRNWLVQMIKEQQPGDEIVCIIYDEVM--YFAEASASQLNVQSIILRTSGAVTVVARLVLFQLKEEGYNPLKESYVQ 165 (424)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~pDlvi~d~~~--~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 165 (424)
...+..+.+.+++. +||+|++.... ..+..+++.+++|++.+......... .+
T Consensus 76 ~~~~~~l~~~i~~~-----~pDvVi~~~~~~~~~~~~~~~~~~~p~v~~~~~~~~~~~--------------------~~ 130 (348)
T TIGR01133 76 LKAVFQARRILKKF-----KPDAVIGFGGYVSGPAGLAAKLLGIPLFHHEQNAVPGLT--------------------NK 130 (348)
T ss_pred HHHHHHHHHHHHhc-----CCCEEEEcCCcccHHHHHHHHHcCCCEEEECCCCCccHH--------------------HH
Confidence 11112222223322 89999998543 33445788889999854321110000 00
Q ss_pred HHHHhhhccCCceEEecChhhhhHHHHHHHHhccCCCeeeecccccCCCCCCCCCcccccccccccccCCCCeEEEEEeC
Q 046167 166 LINNAYSARTSSAVISNTIYCLEESVLSQLQQYFKVPNFPIGPLHKFAPSSNGSLLKEDTSCISWLNNQSPKSVIYVSLG 245 (424)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vGp~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~I~vs~G 245 (424)
.+ .+..+.++..+-. .. ..+ ...++|.-..... .+... ..+.+...+++++|.+..|
T Consensus 131 ~~-----~~~~d~ii~~~~~-~~--------~~~--~~~~i~n~v~~~~------~~~~~-~~~~~~~~~~~~~i~~~gg 187 (348)
T TIGR01133 131 LL-----SRFAKKVLISFPG-AK--------DHF--EAVLVGNPVRQEI------RSLPV-PRERFGLREGKPTILVLGG 187 (348)
T ss_pred HH-----HHHhCeeEECchh-Hh--------hcC--CceEEcCCcCHHH------hcccc-hhhhcCCCCCCeEEEEECC
Confidence 01 1234445443321 11 001 1244443222110 00000 0112221223344444434
Q ss_pred CcccCCHHHHHHHHHHHHh---CCCCeEEEEcCCCCCCCcccccCchhHHHHhcC-C-Cceeeec--chhhhhccccccc
Q 046167 246 SVASMDKKELEEMAWGLVN---SKQPFLWVIRPRTNNAPEGIELLPKVLAEDVQE-N-GYIVKWA--PQKEVLSHVAVGG 318 (424)
Q Consensus 246 s~~~~~~~~~~~~~~a~~~---~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~-n-v~v~~~i--p~~~ll~~~~~~~ 318 (424)
+.. .......+.++++. .+..+++.. ++. .. +.+.+...+ + ..++.+. +...+|+.+++
T Consensus 188 ~~~--~~~~~~~l~~a~~~l~~~~~~~~~~~-g~~--------~~-~~l~~~~~~~~l~~~v~~~~~~~~~~l~~ad~-- 253 (348)
T TIGR01133 188 SQG--AKILNELVPKALAKLAEKGIQIVHQT-GKN--------DL-EKVKNVYQELGIEAIVTFIDENMAAAYAAADL-- 253 (348)
T ss_pred chh--HHHHHHHHHHHHHHHhhcCcEEEEEC-Ccc--------hH-HHHHHHHhhCCceEEecCcccCHHHHHHhCCE--
Confidence 444 22222223344433 344555433 221 01 222222221 1 1222333 45678988887
Q ss_pred cccccchhhHHHhhhcCCceeecCcc---cchhhHHHHHHhhhhcceecCc-ccchHHHHHHHHHHhcc
Q 046167 319 FWSHCGWNSTLESICEGVPMICMPFF---EDQKVNARYLSHVWGVGLELEH-ELERGAVEKAVRKLTVD 383 (424)
Q Consensus 319 ~i~hgG~~t~~eal~~GvP~v~~P~~---~DQ~~na~~~~~~~G~g~~~~~-~~~~~~L~~ai~~ll~~ 383 (424)
+|+++|.+|+.||+++|+|+|++|.. ++|..|+..+.+ .|.|..++. +.+++.|.++|+++++|
T Consensus 254 ~v~~~g~~~l~Ea~~~g~Pvv~~~~~~~~~~~~~~~~~i~~-~~~G~~~~~~~~~~~~l~~~i~~ll~~ 321 (348)
T TIGR01133 254 VISRAGASTVAELAAAGVPAILIPYPYAADDQYYNAKFLED-LGAGLVIRQKELLPEKLLEALLKLLLD 321 (348)
T ss_pred EEECCChhHHHHHHHcCCCEEEeeCCCCccchhhHHHHHHH-CCCEEEEecccCCHHHHHHHHHHHHcC
Confidence 99999988999999999999999863 468889999999 599998877 56899999999999998
No 35
>TIGR00215 lpxB lipid-A-disaccharide synthase. Lipid-A precursor biosynthesis producing lipid A disaccharide in a condensation reaction. transcribed as part of an operon including lpxA
Probab=99.80 E-value=4.2e-18 Score=164.03 Aligned_cols=349 Identities=11% Similarity=0.018 Sum_probs=193.1
Q ss_pred ceEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCCCCCCCCCC-CCCceEEeCCCCCCCCccccccHHHHHHHHHHhc
Q 046167 9 RRVVLVPSPHQGHINPMLQLGTILHSKGFSITVVHTQFNSPNPSN-HPEFEFQSIPDGLMDVNISARNLVDSILLLNENC 87 (424)
Q Consensus 9 ~ril~~~~~~~GH~~p~~~la~~L~~~Gh~V~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (424)
.||+|.++++.||++|. +|+++|+++|++|.|++.......... ..++.+..++ ...+.+.+..+.. .
T Consensus 6 ~ki~i~aGgtsGhi~pa-al~~~l~~~~~~~~~~g~gg~~m~~~g~~~~~~~~~l~---------v~G~~~~l~~~~~-~ 74 (385)
T TIGR00215 6 PTIALVAGEASGDILGA-GLRQQLKEHYPNARFIGVAGPRMAAEGCEVLYSMEELS---------VMGLREVLGRLGR-L 74 (385)
T ss_pred CeEEEEeCCccHHHHHH-HHHHHHHhcCCCcEEEEEccHHHHhCcCccccChHHhh---------hccHHHHHHHHHH-H
Confidence 48999999999999999 999999999999999987532111000 0123333222 1222233333322 2
Q ss_pred hhHHHHHHHHHHhhcCCCCCceEEEecCcc-ch--HHHHHHHhCCceEEEec-chHHHHHHHHhhhcccccCCCCCChhH
Q 046167 88 REPFRNWLVQMIKEQQPGDEIVCIIYDEVM-YF--AEASASQLNVQSIILRT-SGAVTVVARLVLFQLKEEGYNPLKESY 163 (424)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~pDlvi~d~~~-~~--~~~~A~~lgiP~v~~~~-~~~~~~~~~~~~~~~~~~~~~p~~~~~ 163 (424)
...+++..+.+++. +||+||.-... +. ...+|+.+|||++.+.+ ..+. +....+
T Consensus 75 ~~~~~~~~~~l~~~-----kPd~vi~~g~~~~~~~~a~aa~~~gip~v~~i~P~~wa---------------w~~~~~-- 132 (385)
T TIGR00215 75 LKIRKEVVQLAKQA-----KPDLLVGIDAPDFNLTKELKKKDPGIKIIYYISPQVWA---------------WRKWRA-- 132 (385)
T ss_pred HHHHHHHHHHHHhc-----CCCEEEEeCCCCccHHHHHHHhhCCCCEEEEeCCcHhh---------------cCcchH--
Confidence 22233344444443 89999985422 23 23488999999997631 1111 111011
Q ss_pred HHHHHHhhhccCCceEEecChhhhhHHHHHHHHhccCCCeeeecccccCCCCCCCCCcccccccccccccCCCCeEEEEE
Q 046167 164 VQLINNAYSARTSSAVISNTIYCLEESVLSQLQQYFKVPNFPIGPLHKFAPSSNGSLLKEDTSCISWLNNQSPKSVIYVS 243 (424)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vGp~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~I~vs 243 (424)
+.+. +..+.++. .++. +.. ++.. .+.+..++|.-..+... ...+......+.+...+++++|.+.
T Consensus 133 -r~l~-----~~~d~v~~-~~~~-e~~---~~~~-~g~~~~~vGnPv~~~~~---~~~~~~~~~r~~lgl~~~~~~Ilvl 197 (385)
T TIGR00215 133 -KKIE-----KATDFLLA-ILPF-EKA---FYQK-KNVPCRFVGHPLLDAIP---LYKPDRKSAREKLGIDHNGETLALL 197 (385)
T ss_pred -HHHH-----HHHhHhhc-cCCC-cHH---HHHh-cCCCEEEECCchhhhcc---ccCCCHHHHHHHcCCCCCCCEEEEE
Confidence 1111 11222222 2221 111 1122 23466778844322110 0001111111222323456788888
Q ss_pred eCCcccCCHHHHHHHHHHHHhC-----CCCeEEEEcCCCCCCCcccccCchhHHHHhcCCCceeeec-chhhhhcccccc
Q 046167 244 LGSVASMDKKELEEMAWGLVNS-----KQPFLWVIRPRTNNAPEGIELLPKVLAEDVQENGYIVKWA-PQKEVLSHVAVG 317 (424)
Q Consensus 244 ~Gs~~~~~~~~~~~~~~a~~~~-----~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~nv~v~~~i-p~~~ll~~~~~~ 317 (424)
.||....-......+++++..+ +.++++..... .+. +.+ +.+.+....+..+..+. +...+++.+|+
T Consensus 198 ~GSR~aei~k~~~~ll~a~~~l~~~~p~~~~vi~~~~~--~~~---~~~-~~~~~~~~~~~~v~~~~~~~~~~l~aADl- 270 (385)
T TIGR00215 198 PGSRGSEVEKLFPLFLKAAQLLEQQEPDLRRVLPVVNF--KRR---LQF-EQIKAEYGPDLQLHLIDGDARKAMFAADA- 270 (385)
T ss_pred CCCCHHHHHHhHHHHHHHHHHHHHhCCCeEEEEEeCCc--hhH---HHH-HHHHHHhCCCCcEEEECchHHHHHHhCCE-
Confidence 8888752134444555554432 22344433211 110 011 11212222233333222 33458877777
Q ss_pred ccccccchhhHHHhhhcCCceeec----Cccc---------chhhHHHHHHhhhhcceecCc-ccchHHHHHHHHHHhcc
Q 046167 318 GFWSHCGWNSTLESICEGVPMICM----PFFE---------DQKVNARYLSHVWGVGLELEH-ELERGAVEKAVRKLTVD 383 (424)
Q Consensus 318 ~~i~hgG~~t~~eal~~GvP~v~~----P~~~---------DQ~~na~~~~~~~G~g~~~~~-~~~~~~L~~ai~~ll~~ 383 (424)
+|+-+|..|+ |++++|+|+|++ |... .|..|+..+... ++...+.. +.+++.|.+.+.++|+|
T Consensus 271 -~V~~SGt~tl-Ea~a~G~P~Vv~yk~~pl~~~~~~~~~~~~~~~~~nil~~~-~~~pel~q~~~~~~~l~~~~~~ll~~ 347 (385)
T TIGR00215 271 -ALLASGTAAL-EAALIKTPMVVGYRMKPLTFLIARRLVKTDYISLPNILANR-LLVPELLQEECTPHPLAIALLLLLEN 347 (385)
T ss_pred -EeecCCHHHH-HHHHcCCCEEEEEcCCHHHHHHHHHHHcCCeeeccHHhcCC-ccchhhcCCCCCHHHHHHHHHHHhcC
Confidence 9999999988 999999999999 7621 388899999995 99998876 89999999999999999
Q ss_pred c----c-hHHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHH
Q 046167 384 K----E-GEFLRQRAAQLKEEVELSTRKGGFSYNSLNELLD 419 (424)
Q Consensus 384 ~----~-~~~~~~~a~~l~~~~~~~~~~~g~~~~a~~~~~~ 419 (424)
+ + ...+++..+++.+.+.+ .|.+.++++.+++
T Consensus 348 ~~~~~~~~~~~~~~~~~~~~~l~~----~~~~~~~a~~i~~ 384 (385)
T TIGR00215 348 GLKAYKEMHRERQFFEELRQRIYC----NADSERAAQAVLE 384 (385)
T ss_pred CcccHHHHHHHHHHHHHHHHHhcC----CCHHHHHHHHHhh
Confidence 4 3 34555555555555533 3667788877765
No 36
>COG4671 Predicted glycosyl transferase [General function prediction only]
Probab=99.78 E-value=2.6e-17 Score=147.31 Aligned_cols=340 Identities=15% Similarity=0.123 Sum_probs=200.4
Q ss_pred ceEEEEcCC--CccChHHHHHHHHHHHhC--CCeEEEEeCCCCCCCCCCCCCceEEeCCCCCCC--Cc----cccccHHH
Q 046167 9 RRVVLVPSP--HQGHINPMLQLGTILHSK--GFSITVVHTQFNSPNPSNHPEFEFQSIPDGLMD--VN----ISARNLVD 78 (424)
Q Consensus 9 ~ril~~~~~--~~GH~~p~~~la~~L~~~--Gh~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~--~~----~~~~~~~~ 78 (424)
+||+|++.. |.||+.++..||++|++. |.+|+++++......+....|++++.+|.-.-. +. +...+
T Consensus 10 ~Ri~~Yshd~~GlGHlrR~~~Ia~aLv~d~~~~~Il~IsG~~~~~~F~~~~gVd~V~LPsl~k~~~G~~~~~d~~~~--- 86 (400)
T COG4671 10 PRILFYSHDLLGLGHLRRALRIAHALVEDYLGFDILIISGGPPAGGFPGPAGVDFVKLPSLIKGDNGEYGLVDLDGD--- 86 (400)
T ss_pred ceEEEEehhhccchHHHHHHHHHHHHhhcccCceEEEEeCCCccCCCCCcccCceEecCceEecCCCceeeeecCCC---
Confidence 599999965 779999999999999998 999999999766666555479999999942211 11 22222
Q ss_pred HHHHHHHhchhHHHHHHHHHHhhcCCCCCceEEEecCccchHHHHHHHhCCceEEE---ecchH-HHHHHHHhhhccccc
Q 046167 79 SILLLNENCREPFRNWLVQMIKEQQPGDEIVCIIYDEVMYFAEASASQLNVQSIIL---RTSGA-VTVVARLVLFQLKEE 154 (424)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pDlvi~d~~~~~~~~~A~~lgiP~v~~---~~~~~-~~~~~~~~~~~~~~~ 154 (424)
+..+.+.-...+...++.+ +||++|+|.+.++.. -+. .|.+.+ ..+.. ......... +
T Consensus 87 -l~e~~~~Rs~lil~t~~~f--------kPDi~IVd~~P~Glr--~EL--~ptL~yl~~~~t~~vL~lr~i~D~-----p 148 (400)
T COG4671 87 -LEETKKLRSQLILSTAETF--------KPDIFIVDKFPFGLR--FEL--LPTLEYLKTTGTRLVLGLRSIRDI-----P 148 (400)
T ss_pred -HHHHHHHHHHHHHHHHHhc--------CCCEEEEeccccchh--hhh--hHHHHHHhhcCCcceeehHhhhhc-----h
Confidence 2222221122333344444 999999997554421 111 111110 00000 000000000 0
Q ss_pred CCCCCChh---HHHHHHHhhhccCCceEEec---ChhhhhHHHHHHHHhccCCCeeeecccccCCCCCCCCCcccccccc
Q 046167 155 GYNPLKES---YVQLINNAYSARTSSAVISN---TIYCLEESVLSQLQQYFKVPNFPIGPLHKFAPSSNGSLLKEDTSCI 228 (424)
Q Consensus 155 ~~~p~~~~---~~~~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~~~~~~~vGp~~~~~~~~~~~~~~~~~~l~ 228 (424)
+..-..++ ..+.+++ .-+.+.+- .|..+...+ . +....-..+.|+|-+ -++.+ ....|..
T Consensus 149 ~~~~~~w~~~~~~~~I~r-----~yD~V~v~GdP~f~d~~~~~-~-~~~~i~~k~~ytG~v-q~~~~--~~~~p~~---- 214 (400)
T COG4671 149 QELEADWRRAETVRLINR-----FYDLVLVYGDPDFYDPLTEF-P-FAPAIRAKMRYTGFV-QRSLP--HLPLPPH---- 214 (400)
T ss_pred hhhccchhhhHHHHHHHH-----hheEEEEecCccccChhhcC-C-ccHhhhhheeEeEEe-eccCc--CCCCCCc----
Confidence 00000110 0111111 12233322 222222110 0 001111348999988 22111 1111111
Q ss_pred cccccCCCCeEEEEEeCCcccCCHHHHHHHHHHHHh-CCCC--eEEEEcCCCCCCCcccccCchhHHHH----hc--CCC
Q 046167 229 SWLNNQSPKSVIYVSLGSVASMDKKELEEMAWGLVN-SKQP--FLWVIRPRTNNAPEGIELLPKVLAED----VQ--ENG 299 (424)
Q Consensus 229 ~~l~~~~~~~~I~vs~Gs~~~~~~~~~~~~~~a~~~-~~~~--~i~~~~~~~~~~~~~~~~l~~~~~~~----~~--~nv 299 (424)
. .+.+..|+||.|.... ..+.+...++|... .+.+ .++++++ .+|.....+ .+ +++
T Consensus 215 ---~-~pE~~~Ilvs~GGG~d-G~eLi~~~l~A~~~l~~l~~~~~ivtGP----------~MP~~~r~~l~~~A~~~p~i 279 (400)
T COG4671 215 ---E-APEGFDILVSVGGGAD-GAELIETALAAAQLLAGLNHKWLIVTGP----------FMPEAQRQKLLASAPKRPHI 279 (400)
T ss_pred ---C-CCccceEEEecCCChh-hHHHHHHHHHHhhhCCCCCcceEEEeCC----------CCCHHHHHHHHHhcccCCCe
Confidence 1 1445589999887764 67777777777765 3333 4444422 366554433 33 678
Q ss_pred ceeeecchh-hhhccccccccccccchhhHHHhhhcCCceeecCcc---cchhhHHHHHHhhhhcceecCc-ccchHHHH
Q 046167 300 YIVKWAPQK-EVLSHVAVGGFWSHCGWNSTLESICEGVPMICMPFF---EDQKVNARYLSHVWGVGLELEH-ELERGAVE 374 (424)
Q Consensus 300 ~v~~~ip~~-~ll~~~~~~~~i~hgG~~t~~eal~~GvP~v~~P~~---~DQ~~na~~~~~~~G~g~~~~~-~~~~~~L~ 374 (424)
.+..|-.+. .++..++. +|+-||+||++|-|++|+|.+++|.. .||-.-|.|+++ +|+.-++.+ +++++.|+
T Consensus 280 ~I~~f~~~~~~ll~gA~~--vVSm~GYNTvCeILs~~k~aLivPr~~p~eEQliRA~Rl~~-LGL~dvL~pe~lt~~~La 356 (400)
T COG4671 280 SIFEFRNDFESLLAGARL--VVSMGGYNTVCEILSFGKPALIVPRAAPREEQLIRAQRLEE-LGLVDVLLPENLTPQNLA 356 (400)
T ss_pred EEEEhhhhHHHHHHhhhe--eeecccchhhhHHHhCCCceEEeccCCCcHHHHHHHHHHHh-cCcceeeCcccCChHHHH
Confidence 888888765 58877776 99999999999999999999999984 489999999999 899999988 99999999
Q ss_pred HHHHHHhcccc-------hHHHHHHHHHHHHHHH
Q 046167 375 KAVRKLTVDKE-------GEFLRQRAAQLKEEVE 401 (424)
Q Consensus 375 ~ai~~ll~~~~-------~~~~~~~a~~l~~~~~ 401 (424)
++|...++-+. -+....-++.+++.+.
T Consensus 357 ~al~~~l~~P~~~~~~L~L~G~~~~a~~l~e~L~ 390 (400)
T COG4671 357 DALKAALARPSPSKPHLDLEGLEHIARILAELLS 390 (400)
T ss_pred HHHHhcccCCCCCccccCchhhHhHHHHHHHHhh
Confidence 99999998321 1234444555555444
No 37
>PRK13609 diacylglycerol glucosyltransferase; Provisional
Probab=99.76 E-value=2.9e-17 Score=158.96 Aligned_cols=347 Identities=14% Similarity=0.127 Sum_probs=185.2
Q ss_pred cCCCCceEEEEcCC-CccChHHHHHHHHHHHhCCCeEEEEeCCCCCCCCCCCCCc-eE-----EeC-CC--CCCC-Cccc
Q 046167 4 QGQRRRRVVLVPSP-HQGHINPMLQLGTILHSKGFSITVVHTQFNSPNPSNHPEF-EF-----QSI-PD--GLMD-VNIS 72 (424)
Q Consensus 4 m~~~~~ril~~~~~-~~GH~~p~~~la~~L~~~Gh~V~~~~~~~~~~~~~~~~g~-~~-----~~~-~~--~~~~-~~~~ 72 (424)
|++. +||++++.+ |.||..+..+|+++|.++||+|.+++......... ...+ .+ ... |. ++.. ....
T Consensus 1 ~~~~-~rili~t~~~G~GH~~~a~al~~~l~~~g~~~~~~~d~~~~~~~~-~~~~~~~~y~~~~~~~~~~~~~~~~~~~~ 78 (380)
T PRK13609 1 MIKN-PKVLILTAHYGNGHVQVAKTLEQTFRQKGIKDVIVCDLFGESHPV-ITEITKYLYLKSYTIGKELYRLFYYGVEK 78 (380)
T ss_pred CCCC-CeEEEEEcCCCchHHHHHHHHHHHHHhcCCCcEEEEEhHHhcchH-HHHHHHHHHHHHHHHhHHHHHHHHhccCc
Confidence 4444 689888877 55999999999999999999987776643211100 0000 00 000 00 0000 0000
Q ss_pred cccHHHHHHHHHHhchhHHHHHHHHHHhhcCCCCCceEEEecCccchHHHH--HHHhCCceEEEecchHHHHHHHHhhhc
Q 046167 73 ARNLVDSILLLNENCREPFRNWLVQMIKEQQPGDEIVCIIYDEVMYFAEAS--ASQLNVQSIILRTSGAVTVVARLVLFQ 150 (424)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pDlvi~d~~~~~~~~~--A~~lgiP~v~~~~~~~~~~~~~~~~~~ 150 (424)
... ...+..+.......+..++++. +||+||++........+ +..+++|++.+.+... .
T Consensus 79 ~~~-~~~~~~~~~~~~~~l~~~l~~~--------~pD~Vi~~~~~~~~~~~~~~~~~~ip~~~~~td~~----------~ 139 (380)
T PRK13609 79 IYD-KKIFSWYANFGRKRLKLLLQAE--------KPDIVINTFPIIAVPELKKQTGISIPTYNVLTDFC----------L 139 (380)
T ss_pred ccc-hHHHHHHHHHHHHHHHHHHHHh--------CcCEEEEcChHHHHHHHHHhcCCCCCeEEEeCCCC----------C
Confidence 000 0011111111112233344444 89999998644333333 3345689875433210 0
Q ss_pred ccccCCCCCChhHHHHHHHhhhccCCceEEecChhhhhHHHHHHHHh-ccC-CCeeeec-ccccCCCCCCCCCccccccc
Q 046167 151 LKEEGYNPLKESYVQLINNAYSARTSSAVISNTIYCLEESVLSQLQQ-YFK-VPNFPIG-PLHKFAPSSNGSLLKEDTSC 227 (424)
Q Consensus 151 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~-~~~~~vG-p~~~~~~~~~~~~~~~~~~l 227 (424)
+..+ ..+..+.++..+-. ... .+.. ..+ .++..+| |+...... .. ....+
T Consensus 140 ~~~~-----------------~~~~ad~i~~~s~~-~~~----~l~~~gi~~~ki~v~G~p~~~~f~~----~~-~~~~~ 192 (380)
T PRK13609 140 HKIW-----------------VHREVDRYFVATDH-VKK----VLVDIGVPPEQVVETGIPIRSSFEL----KI-NPDII 192 (380)
T ss_pred Cccc-----------------ccCCCCEEEECCHH-HHH----HHHHcCCChhHEEEECcccChHHcC----cC-CHHHH
Confidence 0000 03456677766532 211 1111 111 2466666 33211000 00 11111
Q ss_pred ccccccCCCCeEEEEEeCCcccCCHHHHHHHHHHHHhC-CCCeEEEEcCCCCCCCcccccCchhHHH---HhcCCCceee
Q 046167 228 ISWLNNQSPKSVIYVSLGSVASMDKKELEEMAWGLVNS-KQPFLWVIRPRTNNAPEGIELLPKVLAE---DVQENGYIVK 303 (424)
Q Consensus 228 ~~~l~~~~~~~~I~vs~Gs~~~~~~~~~~~~~~a~~~~-~~~~i~~~~~~~~~~~~~~~~l~~~~~~---~~~~nv~v~~ 303 (424)
..-+...+++++|++..|+... .+.+..+++++.+. +.+++++.+.+. .+.+.+.+ ..++|+.+.+
T Consensus 193 ~~~~~l~~~~~~il~~~G~~~~--~k~~~~li~~l~~~~~~~~viv~G~~~--------~~~~~l~~~~~~~~~~v~~~g 262 (380)
T PRK13609 193 YNKYQLCPNKKILLIMAGAHGV--LGNVKELCQSLMSVPDLQVVVVCGKNE--------ALKQSLEDLQETNPDALKVFG 262 (380)
T ss_pred HHHcCCCCCCcEEEEEcCCCCC--CcCHHHHHHHHhhCCCcEEEEEeCCCH--------HHHHHHHHHHhcCCCcEEEEe
Confidence 1222222345677777787763 22345566666544 345655553221 11222222 2335889999
Q ss_pred ecchh-hhhccccccccccccchhhHHHhhhcCCceeec-CcccchhhHHHHHHhhhhcceecCcccchHHHHHHHHHHh
Q 046167 304 WAPQK-EVLSHVAVGGFWSHCGWNSTLESICEGVPMICM-PFFEDQKVNARYLSHVWGVGLELEHELERGAVEKAVRKLT 381 (424)
Q Consensus 304 ~ip~~-~ll~~~~~~~~i~hgG~~t~~eal~~GvP~v~~-P~~~DQ~~na~~~~~~~G~g~~~~~~~~~~~L~~ai~~ll 381 (424)
|+++. .++..+++ +|+.+|..|+.||+++|+|+|+. |..+.|..|+..+++ .|+++.. .+++.|.++|.+++
T Consensus 263 ~~~~~~~l~~~aD~--~v~~~gg~t~~EA~a~g~PvI~~~~~~g~~~~n~~~~~~-~G~~~~~---~~~~~l~~~i~~ll 336 (380)
T PRK13609 263 YVENIDELFRVTSC--MITKPGGITLSEAAALGVPVILYKPVPGQEKENAMYFER-KGAAVVI---RDDEEVFAKTEALL 336 (380)
T ss_pred chhhHHHHHHhccE--EEeCCCchHHHHHHHhCCCEEECCCCCCcchHHHHHHHh-CCcEEEE---CCHHHHHHHHHHHH
Confidence 99874 69988887 99999988999999999999985 666777899999988 4988754 37899999999999
Q ss_pred cccchHHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHH
Q 046167 382 VDKEGEFLRQRAAQLKEEVELSTRKGGFSYNSLNELLDLI 421 (424)
Q Consensus 382 ~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~a~~~~~~~~ 421 (424)
+| +..+++ +++..++. ....+..+.++.+++.+
T Consensus 337 ~~---~~~~~~---m~~~~~~~-~~~~s~~~i~~~i~~~~ 369 (380)
T PRK13609 337 QD---DMKLLQ---MKEAMKSL-YLPEPADHIVDDILAEN 369 (380)
T ss_pred CC---HHHHHH---HHHHHHHh-CCCchHHHHHHHHHHhh
Confidence 98 333333 33333322 12244555566555544
No 38
>PRK00025 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=99.71 E-value=9.2e-16 Score=148.50 Aligned_cols=345 Identities=15% Similarity=0.122 Sum_probs=172.6
Q ss_pred ceEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCCCCC-CCCCCCCCceEEeCCCCCCCCccccccHHHHHHHHHHhc
Q 046167 9 RRVVLVPSPHQGHINPMLQLGTILHSKGFSITVVHTQFNS-PNPSNHPEFEFQSIPDGLMDVNISARNLVDSILLLNENC 87 (424)
Q Consensus 9 ~ril~~~~~~~GH~~p~~~la~~L~~~Gh~V~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (424)
|||+|+++++.||++|.. ++++|+++++++.+++..... +......++.+..++ ...+.+.+..+....
T Consensus 2 ~ki~i~~Ggt~G~i~~a~-l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~---------~~g~~~~~~~~~~~~ 71 (380)
T PRK00025 2 LRIAIVAGEVSGDLLGAG-LIRALKARAPNLEFVGVGGPRMQAAGCESLFDMEELA---------VMGLVEVLPRLPRLL 71 (380)
T ss_pred ceEEEEecCcCHHHHHHH-HHHHHHhcCCCcEEEEEccHHHHhCCCccccCHHHhh---------hccHHHHHHHHHHHH
Confidence 689999999999999999 999999998888888753211 110000122222222 112222322222111
Q ss_pred --hhHHHHHHHHHHhhcCCCCCceEEEecCc-cchH--HHHHHHhCCceEEEecchHHHHHHHHhhhcccccCCCCCChh
Q 046167 88 --REPFRNWLVQMIKEQQPGDEIVCIIYDEV-MYFA--EASASQLNVQSIILRTSGAVTVVARLVLFQLKEEGYNPLKES 162 (424)
Q Consensus 88 --~~~~~~~~~~~~~~~~~~~~pDlvi~d~~-~~~~--~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 162 (424)
...++.+++++ +||+|+.... ..+. ...|++.|||++.+.+.... .+.+..
T Consensus 72 ~~~~~~~~~l~~~--------kPdivi~~~~~~~~~~~a~~a~~~~ip~i~~~~~~~~--------------~~~~~~-- 127 (380)
T PRK00025 72 KIRRRLKRRLLAE--------PPDVFIGIDAPDFNLRLEKKLRKAGIPTIHYVSPSVW--------------AWRQGR-- 127 (380)
T ss_pred HHHHHHHHHHHHc--------CCCEEEEeCCCCCCHHHHHHHHHCCCCEEEEeCCchh--------------hcCchH--
Confidence 11223344444 8999987432 1233 33477789998876432100 000000
Q ss_pred HHHHHHHhhhccCCceEEecChhhhhHHHHHHHHhccCCCeeeecccccCCCCCCCCCcccccccccccccCCCCeEEEE
Q 046167 163 YVQLINNAYSARTSSAVISNTIYCLEESVLSQLQQYFKVPNFPIGPLHKFAPSSNGSLLKEDTSCISWLNNQSPKSVIYV 242 (424)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vGp~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~I~v 242 (424)
.+.+ ...++.++..+-. ... .+.. .+.++.++|........ ..+....+...+...+++++|++
T Consensus 128 -~~~~-----~~~~d~i~~~~~~--~~~---~~~~-~g~~~~~~G~p~~~~~~----~~~~~~~~~~~l~~~~~~~~il~ 191 (380)
T PRK00025 128 -AFKI-----AKATDHVLALFPF--EAA---FYDK-LGVPVTFVGHPLADAIP----LLPDRAAARARLGLDPDARVLAL 191 (380)
T ss_pred -HHHH-----HHHHhhheeCCcc--CHH---HHHh-cCCCeEEECcCHHHhcc----cccChHHHHHHcCCCCCCCEEEE
Confidence 0111 1223334433311 111 1122 23457778743322110 00011112222332234556777
Q ss_pred EeCCcccCCHHHHHHHHHHHHhC-----CCCeEEEEcCCCCCCCcccccCchhHHHHhc----CCCceeeecchhhhhcc
Q 046167 243 SLGSVASMDKKELEEMAWGLVNS-----KQPFLWVIRPRTNNAPEGIELLPKVLAEDVQ----ENGYIVKWAPQKEVLSH 313 (424)
Q Consensus 243 s~Gs~~~~~~~~~~~~~~a~~~~-----~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~----~nv~v~~~ip~~~ll~~ 313 (424)
..||...........+++++..+ +..++++.+.+ ...+.+.+... -++.+.+ -....+++.
T Consensus 192 ~~gsr~~~~~~~~~~l~~a~~~l~~~~~~~~~ii~~~~~---------~~~~~~~~~~~~~~~~~v~~~~-~~~~~~~~~ 261 (380)
T PRK00025 192 LPGSRGQEIKRLLPPFLKAAQLLQQRYPDLRFVLPLVNP---------KRREQIEEALAEYAGLEVTLLD-GQKREAMAA 261 (380)
T ss_pred ECCCCHHHHHHHHHHHHHHHHHHHHhCCCeEEEEecCCh---------hhHHHHHHHHhhcCCCCeEEEc-ccHHHHHHh
Confidence 77776542223344455554332 23455443211 11122222222 1233322 123458877
Q ss_pred ccccccccccchhhHHHhhhcCCceeecCcccc--------hhhH-----HHHHHhhhhcceecCc-ccchHHHHHHHHH
Q 046167 314 VAVGGFWSHCGWNSTLESICEGVPMICMPFFED--------QKVN-----ARYLSHVWGVGLELEH-ELERGAVEKAVRK 379 (424)
Q Consensus 314 ~~~~~~i~hgG~~t~~eal~~GvP~v~~P~~~D--------Q~~n-----a~~~~~~~G~g~~~~~-~~~~~~L~~ai~~ 379 (424)
+|+ +|+.+|.+++ |++++|+|+|++|.... |..| +..+... +++..+.. ..+++.|.+++.+
T Consensus 262 aDl--~v~~sG~~~l-Ea~a~G~PvI~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~l~~~i~~ 337 (380)
T PRK00025 262 ADA--ALAASGTVTL-ELALLKVPMVVGYKVSPLTFWIAKRLVKVPYVSLPNLLAGR-ELVPELLQEEATPEKLARALLP 337 (380)
T ss_pred CCE--EEECccHHHH-HHHHhCCCEEEEEccCHHHHHHHHHHHcCCeeehHHHhcCC-CcchhhcCCCCCHHHHHHHHHH
Confidence 777 9999998887 99999999999964321 2222 2333332 33444443 6799999999999
Q ss_pred Hhcccc-hHHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHh
Q 046167 380 LTVDKE-GEFLRQRAAQLKEEVELSTRKGGFSYNSLNELLDLIN 422 (424)
Q Consensus 380 ll~~~~-~~~~~~~a~~l~~~~~~~~~~~g~~~~a~~~~~~~~~ 422 (424)
+++|++ .+.++++++++.+.+ .. +...+.++.+.+.+.
T Consensus 338 ll~~~~~~~~~~~~~~~~~~~~-~~----~a~~~~~~~i~~~~~ 376 (380)
T PRK00025 338 LLADGARRQALLEGFTELHQQL-RC----GADERAAQAVLELLK 376 (380)
T ss_pred HhcCHHHHHHHHHHHHHHHHHh-CC----CHHHHHHHHHHHHhh
Confidence 999943 233444444444443 22 556666666666543
No 39
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=99.71 E-value=5.4e-16 Score=142.59 Aligned_cols=253 Identities=14% Similarity=0.177 Sum_probs=148.0
Q ss_pred CccChHHHHHHHHHHHhCCCeEEEEeCCCCCC--CCCCCCCceEEeCCCCCCCCccccccHHHHHHHHHHhchhHHHHHH
Q 046167 18 HQGHINPMLQLGTILHSKGFSITVVHTQFNSP--NPSNHPEFEFQSIPDGLMDVNISARNLVDSILLLNENCREPFRNWL 95 (424)
Q Consensus 18 ~~GH~~p~~~la~~L~~~Gh~V~~~~~~~~~~--~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (424)
|.||++++++||++|+++||+|+|++...... ...+..|+....+++.-. . .....+++
T Consensus 13 G~GHv~Rcl~LA~~l~~~g~~v~f~~~~~~~~~~~~i~~~g~~v~~~~~~~~--------~-----------~~d~~~~~ 73 (279)
T TIGR03590 13 GLGHVMRCLTLARALHAQGAEVAFACKPLPGDLIDLLLSAGFPVYELPDESS--------R-----------YDDALELI 73 (279)
T ss_pred cccHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHcCCeEEEecCCCc--------h-----------hhhHHHHH
Confidence 78999999999999999999999999863332 111236788777763311 0 11122233
Q ss_pred HHHHhhcCCCCCceEEEecCccchHH--HHHHHhCCceEEEecchHHHHHHHHhhhcccccCCCCCChhHHHHHHHhhhc
Q 046167 96 VQMIKEQQPGDEIVCIIYDEVMYFAE--ASASQLNVQSIILRTSGAVTVVARLVLFQLKEEGYNPLKESYVQLINNAYSA 173 (424)
Q Consensus 96 ~~~~~~~~~~~~pDlvi~d~~~~~~~--~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~ 173 (424)
+.+.+. +||+||+|....... ...+..+.+.+.+.-... . .
T Consensus 74 ~~l~~~-----~~d~vV~D~y~~~~~~~~~~k~~~~~l~~iDD~~~--------------~------------------~ 116 (279)
T TIGR03590 74 NLLEEE-----KFDILIVDHYGLDADWEKLIKEFGRKILVIDDLAD--------------R------------------P 116 (279)
T ss_pred HHHHhc-----CCCEEEEcCCCCCHHHHHHHHHhCCeEEEEecCCC--------------C------------------C
Confidence 333322 899999997542222 233344666665432110 0 1
Q ss_pred cCCceEEecChhhhhHHHHHHHHhccC-CCeeeecc---cccCCCCCCCCCcccccccccccccCCCCeEEEEEeCCccc
Q 046167 174 RTSSAVISNTIYCLEESVLSQLQQYFK-VPNFPIGP---LHKFAPSSNGSLLKEDTSCISWLNNQSPKSVIYVSLGSVAS 249 (424)
Q Consensus 174 ~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~~vGp---~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~I~vs~Gs~~~ 249 (424)
..++.++-.+.. .+. ..+ ....+ ...++.|| ++.+ +++... .......+.+.|+|++|+...
T Consensus 117 ~~~D~vin~~~~-~~~--~~y-~~~~~~~~~~l~G~~Y~~lr~------eF~~~~----~~~~~~~~~~~iLi~~GG~d~ 182 (279)
T TIGR03590 117 HDCDLLLDQNLG-ADA--SDY-QGLVPANCRLLLGPSYALLRE------EFYQLA----TANKRRKPLRRVLVSFGGADP 182 (279)
T ss_pred cCCCEEEeCCCC-cCH--hHh-cccCcCCCeEEecchHHhhhH------HHHHhh----HhhhcccccCeEEEEeCCcCC
Confidence 123433333322 111 111 11111 23667787 3322 111110 000001123579999997764
Q ss_pred CCHHHHHHHHHHHHhC--CCCeEEEEcCCCCCCCcccccCchhHHHH--hcCCCceeeecchh-hhhccccccccccccc
Q 046167 250 MDKKELEEMAWGLVNS--KQPFLWVIRPRTNNAPEGIELLPKVLAED--VQENGYIVKWAPQK-EVLSHVAVGGFWSHCG 324 (424)
Q Consensus 250 ~~~~~~~~~~~a~~~~--~~~~i~~~~~~~~~~~~~~~~l~~~~~~~--~~~nv~v~~~ip~~-~ll~~~~~~~~i~hgG 324 (424)
......+++++.+. +.++.++++... ...+.+.+. ..+|+.+.+++++. .+|+.+++ +|++||
T Consensus 183 --~~~~~~~l~~l~~~~~~~~i~vv~G~~~--------~~~~~l~~~~~~~~~i~~~~~~~~m~~lm~~aDl--~Is~~G 250 (279)
T TIGR03590 183 --DNLTLKLLSALAESQINISITLVTGSSN--------PNLDELKKFAKEYPNIILFIDVENMAELMNEADL--AIGAAG 250 (279)
T ss_pred --cCHHHHHHHHHhccccCceEEEEECCCC--------cCHHHHHHHHHhCCCEEEEeCHHHHHHHHHHCCE--EEECCc
Confidence 33445566676654 346666664331 122333322 23588888999875 69988887 999999
Q ss_pred hhhHHHhhhcCCceeecCcccchhhHHHH
Q 046167 325 WNSTLESICEGVPMICMPFFEDQKVNARY 353 (424)
Q Consensus 325 ~~t~~eal~~GvP~v~~P~~~DQ~~na~~ 353 (424)
+|++|+++.|+|+|++|...+|..||+.
T Consensus 251 -~T~~E~~a~g~P~i~i~~~~nQ~~~a~~ 278 (279)
T TIGR03590 251 -STSWERCCLGLPSLAICLAENQQSNSQQ 278 (279)
T ss_pred -hHHHHHHHcCCCEEEEEecccHHHHhhh
Confidence 9999999999999999999999999975
No 40
>PRK13608 diacylglycerol glucosyltransferase; Provisional
Probab=99.70 E-value=3.7e-15 Score=144.36 Aligned_cols=165 Identities=20% Similarity=0.254 Sum_probs=109.5
Q ss_pred CCCeEEEEEeCCcccCCHHHHHHHHHHHHhC--CCCeEEEEcCCCCCCCcccccCchhHHHHh--cCCCceeeecchh-h
Q 046167 235 SPKSVIYVSLGSVASMDKKELEEMAWGLVNS--KQPFLWVIRPRTNNAPEGIELLPKVLAEDV--QENGYIVKWAPQK-E 309 (424)
Q Consensus 235 ~~~~~I~vs~Gs~~~~~~~~~~~~~~a~~~~--~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~--~~nv~v~~~ip~~-~ 309 (424)
+++++|+++.|+.+. ...+..+++++.+. +.+++++++.+ ..+-+.+.+.. .+++.+.+|+++. .
T Consensus 200 ~~~~~ilv~~G~lg~--~k~~~~li~~~~~~~~~~~~vvv~G~~--------~~l~~~l~~~~~~~~~v~~~G~~~~~~~ 269 (391)
T PRK13608 200 PDKQTILMSAGAFGV--SKGFDTMITDILAKSANAQVVMICGKS--------KELKRSLTAKFKSNENVLILGYTKHMNE 269 (391)
T ss_pred CCCCEEEEECCCccc--chhHHHHHHHHHhcCCCceEEEEcCCC--------HHHHHHHHHHhccCCCeEEEeccchHHH
Confidence 346688888888773 23344445554322 34555555321 11222232222 3578888999654 5
Q ss_pred hhccccccccccccchhhHHHhhhcCCceeec-CcccchhhHHHHHHhhhhcceecCcccchHHHHHHHHHHhcccchHH
Q 046167 310 VLSHVAVGGFWSHCGWNSTLESICEGVPMICM-PFFEDQKVNARYLSHVWGVGLELEHELERGAVEKAVRKLTVDKEGEF 388 (424)
Q Consensus 310 ll~~~~~~~~i~hgG~~t~~eal~~GvP~v~~-P~~~DQ~~na~~~~~~~G~g~~~~~~~~~~~L~~ai~~ll~~~~~~~ 388 (424)
+++.+|+ +|+.+|..|+.||+++|+|+|++ |..+.|..|+..+++ .|+|+... +.+++.++|.++++|+ .
T Consensus 270 ~~~~aDl--~I~k~gg~tl~EA~a~G~PvI~~~~~pgqe~~N~~~~~~-~G~g~~~~---~~~~l~~~i~~ll~~~---~ 340 (391)
T PRK13608 270 WMASSQL--MITKPGGITISEGLARCIPMIFLNPAPGQELENALYFEE-KGFGKIAD---TPEEAIKIVASLTNGN---E 340 (391)
T ss_pred HHHhhhE--EEeCCchHHHHHHHHhCCCEEECCCCCCcchhHHHHHHh-CCcEEEeC---CHHHHHHHHHHHhcCH---H
Confidence 8988888 99998888999999999999998 666677899999999 49997654 7889999999999983 2
Q ss_pred HHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHh
Q 046167 389 LRQRAAQLKEEVELSTRKGGFSYNSLNELLDLIN 422 (424)
Q Consensus 389 ~~~~a~~l~~~~~~~~~~~g~~~~a~~~~~~~~~ 422 (424)
..+++++..++. .+..+..+.++.+++.+.
T Consensus 341 ---~~~~m~~~~~~~-~~~~s~~~i~~~l~~l~~ 370 (391)
T PRK13608 341 ---QLTNMISTMEQD-KIKYATQTICRDLLDLIG 370 (391)
T ss_pred ---HHHHHHHHHHHh-cCCCCHHHHHHHHHHHhh
Confidence 223344444332 122455666676666554
No 41
>PLN02605 monogalactosyldiacylglycerol synthase
Probab=99.61 E-value=1.2e-13 Score=133.63 Aligned_cols=114 Identities=15% Similarity=0.201 Sum_probs=82.5
Q ss_pred CCCceeeecchh-hhhccccccccccccchhhHHHhhhcCCceeecCcccchh-hHHHHHHhhhhcceecCcccchHHHH
Q 046167 297 ENGYIVKWAPQK-EVLSHVAVGGFWSHCGWNSTLESICEGVPMICMPFFEDQK-VNARYLSHVWGVGLELEHELERGAVE 374 (424)
Q Consensus 297 ~nv~v~~~ip~~-~ll~~~~~~~~i~hgG~~t~~eal~~GvP~v~~P~~~DQ~-~na~~~~~~~G~g~~~~~~~~~~~L~ 374 (424)
.++++.+|+++. .++..+|+ +|+.+|.+|++||+++|+|+|+.+....|. .|+..+.+. |.|..+ .+++.|.
T Consensus 265 ~~v~~~G~~~~~~~l~~aaDv--~V~~~g~~ti~EAma~g~PvI~~~~~pgqe~gn~~~i~~~-g~g~~~---~~~~~la 338 (382)
T PLN02605 265 IPVKVRGFVTNMEEWMGACDC--IITKAGPGTIAEALIRGLPIILNGYIPGQEEGNVPYVVDN-GFGAFS---ESPKEIA 338 (382)
T ss_pred CCeEEEeccccHHHHHHhCCE--EEECCCcchHHHHHHcCCCEEEecCCCccchhhHHHHHhC-Cceeec---CCHHHHH
Confidence 567888999864 58988887 999999999999999999999998766674 799999984 999765 4899999
Q ss_pred HHHHHHhcccchHHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHh
Q 046167 375 KAVRKLTVDKEGEFLRQRAAQLKEEVELSTRKGGFSYNSLNELLDLIN 422 (424)
Q Consensus 375 ~ai~~ll~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~a~~~~~~~~~ 422 (424)
++|.++++|+ +. ..+++++..++. ....+..+.++.+.+.+.
T Consensus 339 ~~i~~ll~~~--~~---~~~~m~~~~~~~-~~~~a~~~i~~~l~~~~~ 380 (382)
T PLN02605 339 RIVAEWFGDK--SD---ELEAMSENALKL-ARPEAVFDIVHDLHELVR 380 (382)
T ss_pred HHHHHHHcCC--HH---HHHHHHHHHHHh-cCCchHHHHHHHHHHHhh
Confidence 9999999872 12 222333333322 111444556666665543
No 42
>TIGR03492 conserved hypothetical protein. This protein family is restricted to the Cyanobacteria, in one or two copies, save for instances in the genus Deinococcus. This protein shows some sequence similarity, especially toward the C-terminus, to lipid-A-disaccharide synthase (TIGR00215 or pfam02684). The function is unknown.
Probab=99.61 E-value=4.4e-13 Score=129.37 Aligned_cols=312 Identities=15% Similarity=0.039 Sum_probs=175.3
Q ss_pred CccChHHHHHHHHHHHh--CCCeEE---EEeCCCCCCC-CCCCCCceEEeCCCCCCCCccccccHHHHHHHHHH-hchhH
Q 046167 18 HQGHINPMLQLGTILHS--KGFSIT---VVHTQFNSPN-PSNHPEFEFQSIPDGLMDVNISARNLVDSILLLNE-NCREP 90 (424)
Q Consensus 18 ~~GH~~p~~~la~~L~~--~Gh~V~---~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 90 (424)
|+|-=.-.++||++|++ .|++|. |++.....+. .....| .+..+| .+.-...++...+..... .....
T Consensus 6 ghged~~a~ai~~~l~~~~~~~~v~~~p~vG~~~~~e~~~ip~~g-~~~~~~----sgg~~~~~~~~~~~~~~~gl~~~~ 80 (396)
T TIGR03492 6 GHGEDLIAARIAKALLQLSPDLNLEALPLVGEGRAYQNLGIPIIG-PTKELP----SGGFSYQSLRGLLRDLRAGLVGLT 80 (396)
T ss_pred CchHHHHHHHHHHHHHhhCCCCCeEEeCcccCCHHHhhCCCceeC-CCCCCC----CCCccCCCHHHHHHHHHhhHHHHH
Confidence 44444567889999998 699999 9998733332 111123 444444 332333555566666555 33333
Q ss_pred HHH--HHHHHHhhcCCCCCceEEEecCccchHHHHHHHhCCceEE---EecchHHH------HHHHHhhhcccccCCCCC
Q 046167 91 FRN--WLVQMIKEQQPGDEIVCIIYDEVMYFAEASASQLNVQSII---LRTSGAVT------VVARLVLFQLKEEGYNPL 159 (424)
Q Consensus 91 ~~~--~~~~~~~~~~~~~~pDlvi~d~~~~~~~~~A~~lgiP~v~---~~~~~~~~------~~~~~~~~~~~~~~~~p~ 159 (424)
++. +++++.+ +||+||+-..+. ...+|..+|+|++. ..+..... .+..++ ......+.|
T Consensus 81 ~~~~~~~~~~~~------~p~~v~~~Gg~v-~~~aA~~~~~p~~~~~~~esn~~~~~~~~~~~~~~~~--~~~G~~~~p- 150 (396)
T TIGR03492 81 LGQWRALRKWAK------KGDLIVAVGDIV-PLLFAWLSGKPYAFVGTAKSDYYWESGPRRSPSDEYH--RLEGSLYLP- 150 (396)
T ss_pred HHHHHHHHHHhh------cCCEEEEECcHH-HHHHHHHcCCCceEEEeeccceeecCCCCCccchhhh--ccCCCccCH-
Confidence 332 4555532 799999976555 77899999999998 33322100 000000 000011111
Q ss_pred ChhHHHHHHH-hhhccCCceEEecChhhhhHHHHHHHHhccCCCeeeecccccCCCCCCCCCcccccccccccccCCCCe
Q 046167 160 KESYVQLINN-AYSARTSSAVISNTIYCLEESVLSQLQQYFKVPNFPIGPLHKFAPSSNGSLLKEDTSCISWLNNQSPKS 238 (424)
Q Consensus 160 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vGp~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~ 238 (424)
+ ++ .-..+.++.++.+. +. . .+.+.+ .+.++.++|-...+.-. .... .. + .++++
T Consensus 151 ------~-e~n~l~~~~a~~v~~~~-~~-t---~~~l~~-~g~k~~~vGnPv~d~l~------~~~~--~~-l--~~~~~ 206 (396)
T TIGR03492 151 ------W-ERWLMRSRRCLAVFVRD-RL-T---ARDLRR-QGVRASYLGNPMMDGLE------PPER--KP-L--LTGRF 206 (396)
T ss_pred ------H-HHHHhhchhhCEEeCCC-HH-H---HHHHHH-CCCeEEEeCcCHHhcCc------cccc--cc-c--CCCCC
Confidence 1 11 11123344444443 22 1 122332 23579999954433211 0000 01 1 23356
Q ss_pred EEEEEeCCcccCCHHHHHHHHHHHHhC----CCCeEEEEcCCCCCCCcccccCchhHHHHhc------------------
Q 046167 239 VIYVSLGSVASMDKKELEEMAWGLVNS----KQPFLWVIRPRTNNAPEGIELLPKVLAEDVQ------------------ 296 (424)
Q Consensus 239 ~I~vs~Gs~~~~~~~~~~~~~~a~~~~----~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~------------------ 296 (424)
+|.+-.||....-...+..+++++..+ +..+++.+.+.. ..+.+.+...
T Consensus 207 ~lllLpGSR~ae~~~~lp~~l~al~~L~~~~~~~~v~~~~~~~---------~~~~~~~~l~~~g~~~~~~~~~~~~~~~ 277 (396)
T TIGR03492 207 RIALLPGSRPPEAYRNLKLLLRALEALPDSQPFVFLAAIVPSL---------SLEKLQAILEDLGWQLEGSSEDQTSLFQ 277 (396)
T ss_pred EEEEECCCCHHHHHccHHHHHHHHHHHhhCCCeEEEEEeCCCC---------CHHHHHHHHHhcCceecCCccccchhhc
Confidence 888888998653334444555555544 455666663321 1122221111
Q ss_pred -CCCceeeecc-hhhhhccccccccccccchhhHHHhhhcCCceeecCcccchhhHHHHHHhhh----hcceecCcccch
Q 046167 297 -ENGYIVKWAP-QKEVLSHVAVGGFWSHCGWNSTLESICEGVPMICMPFFEDQKVNARYLSHVW----GVGLELEHELER 370 (424)
Q Consensus 297 -~nv~v~~~ip-~~~ll~~~~~~~~i~hgG~~t~~eal~~GvP~v~~P~~~DQ~~na~~~~~~~----G~g~~~~~~~~~ 370 (424)
+++.+..+.. ...+++.+++ +|+.+|..| .|+++.|+|+|++|.-..|. |+..+++ . |.+..+.. .+.
T Consensus 278 ~~~~~v~~~~~~~~~~l~~ADl--vI~rSGt~T-~E~a~lg~P~Ilip~~~~q~-na~~~~~-~~~l~g~~~~l~~-~~~ 351 (396)
T TIGR03492 278 KGTLEVLLGRGAFAEILHWADL--GIAMAGTAT-EQAVGLGKPVIQLPGKGPQF-TYGFAEA-QSRLLGGSVFLAS-KNP 351 (396)
T ss_pred cCceEEEechHhHHHHHHhCCE--EEECcCHHH-HHHHHhCCCEEEEeCCCCHH-HHHHHHh-hHhhcCCEEecCC-CCH
Confidence 1244445543 3568978887 999999766 99999999999999767786 8877665 3 66666655 566
Q ss_pred HHHHHHHHHHhcc
Q 046167 371 GAVEKAVRKLTVD 383 (424)
Q Consensus 371 ~~L~~ai~~ll~~ 383 (424)
+.|.+++.++++|
T Consensus 352 ~~l~~~l~~ll~d 364 (396)
T TIGR03492 352 EQAAQVVRQLLAD 364 (396)
T ss_pred HHHHHHHHHHHcC
Confidence 9999999999998
No 43
>cd03814 GT1_like_2 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=99.59 E-value=3e-12 Score=122.46 Aligned_cols=334 Identities=15% Similarity=0.076 Sum_probs=174.2
Q ss_pred ccChHHHHHHHHHHHhCCCeEEEEeCCCCCCCCCCCCCceEEeCCCCCCCCccccccHHHHHHHHHHhchhHHHHHHHHH
Q 046167 19 QGHINPMLQLGTILHSKGFSITVVHTQFNSPNPSNHPEFEFQSIPDGLMDVNISARNLVDSILLLNENCREPFRNWLVQM 98 (424)
Q Consensus 19 ~GH~~p~~~la~~L~~~Gh~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (424)
.|+...+..|+++|.++||+|++++...............+..++. +.. ..... .+. ....+...++..
T Consensus 14 ~G~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~--~~~--~~~~~--~~~-----~~~~~~~~~~~~ 82 (364)
T cd03814 14 NGVVRTLQRLVEHLRARGHEVLVIAPGPFRESEGPARVVPVPSVPL--PGY--PEIRL--ALP-----PRRRVRRLLDAF 82 (364)
T ss_pred cceehHHHHHHHHHHHCCCEEEEEeCCchhhccCCCCceeeccccc--Ccc--cceEe--ccc-----chhhHHHHHHhc
Confidence 7999999999999999999999999863322211101111111110 000 00000 000 011122223333
Q ss_pred HhhcCCCCCceEEEecCcc---chHHHHHHHhCCceEEEecchHHHHHHHHhhhcccccCCCCCChhHHHHHHH--hhhc
Q 046167 99 IKEQQPGDEIVCIIYDEVM---YFAEASASQLNVQSIILRTSGAVTVVARLVLFQLKEEGYNPLKESYVQLINN--AYSA 173 (424)
Q Consensus 99 ~~~~~~~~~pDlvi~d~~~---~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~--~~~~ 173 (424)
+||+|++.... ..+..++++.++|++...+..+........ ..+ . ...... ....
T Consensus 83 --------~pdii~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~--------~~~--~--~~~~~~~~~~~~ 142 (364)
T cd03814 83 --------APDVVHIATPGPLGLAALRAARRLGIPVVTSYHTDFPEYLRYYG--------LGP--L--SWLAWAYLRWFH 142 (364)
T ss_pred --------CCCEEEEeccchhhHHHHHHHHHcCCCEEEEEecChHHHhhhcc--------cch--H--hHhhHHHHHHHH
Confidence 89999876433 445678888999999876654332111100 000 0 111111 1223
Q ss_pred cCCceEEecChhhhhHHHHHHHHhccCCCeeeecccccCCCCCCCCCcccccccccccccCCCCeEEEEEeCCcccCCHH
Q 046167 174 RTSSAVISNTIYCLEESVLSQLQQYFKVPNFPIGPLHKFAPSSNGSLLKEDTSCISWLNNQSPKSVIYVSLGSVASMDKK 253 (424)
Q Consensus 174 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vGp~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~I~vs~Gs~~~~~~~ 253 (424)
..++.++..+....+ ........++..+.+......- ............+. ..++.+++..|+... .+
T Consensus 143 ~~~d~i~~~s~~~~~-----~~~~~~~~~~~~~~~g~~~~~~---~~~~~~~~~~~~~~--~~~~~~i~~~G~~~~--~k 210 (364)
T cd03814 143 NRADRVLVPSPSLAD-----ELRARGFRRVRLWPRGVDTELF---HPRRRDEALRARLG--PPDRPVLLYVGRLAP--EK 210 (364)
T ss_pred HhCCEEEeCCHHHHH-----HHhccCCCceeecCCCcccccc---CcccccHHHHHHhC--CCCCeEEEEEecccc--cc
Confidence 456777776654333 1122111334433332221100 00000000011111 223456677787653 22
Q ss_pred HHHHHHHHHHhC----CCCeEEEEcCCCCCCCcccccCchhHHHHhcCCCceeeecchhh---hhccccccccccccc--
Q 046167 254 ELEEMAWGLVNS----KQPFLWVIRPRTNNAPEGIELLPKVLAEDVQENGYIVKWAPQKE---VLSHVAVGGFWSHCG-- 324 (424)
Q Consensus 254 ~~~~~~~a~~~~----~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~nv~v~~~ip~~~---ll~~~~~~~~i~hgG-- 324 (424)
-+..+++++..+ +..++ +++.+. ..+.+. ...+|+.+.+++++.+ ++..+++ +|+.+.
T Consensus 211 ~~~~~i~~~~~l~~~~~~~l~-i~G~~~---------~~~~~~-~~~~~v~~~g~~~~~~~~~~~~~~d~--~l~~s~~e 277 (364)
T cd03814 211 NLEALLDADLPLRRRPPVRLV-IVGDGP---------ARARLE-ARYPNVHFLGFLDGEELAAAYASADV--FVFPSRTE 277 (364)
T ss_pred CHHHHHHHHHHhhhcCCceEE-EEeCCc---------hHHHHh-ccCCcEEEEeccCHHHHHHHHHhCCE--EEECcccc
Confidence 233344444433 23443 332211 111111 3457889999998765 7877777 776654
Q ss_pred --hhhHHHhhhcCCceeecCcccchhhHHHHHHhhhhcceecCcccchHHHHHHHHHHhcccchHHHHHHHHHHHHHHHH
Q 046167 325 --WNSTLESICEGVPMICMPFFEDQKVNARYLSHVWGVGLELEHELERGAVEKAVRKLTVDKEGEFLRQRAAQLKEEVEL 402 (424)
Q Consensus 325 --~~t~~eal~~GvP~v~~P~~~DQ~~na~~~~~~~G~g~~~~~~~~~~~L~~ai~~ll~~~~~~~~~~~a~~l~~~~~~ 402 (424)
.+++.||+++|+|+|+.+.. .+...+++ .+.|..... .+.+++.++|.++++|+ ..+++..+-+.+..+
T Consensus 278 ~~~~~~lEa~a~g~PvI~~~~~----~~~~~i~~-~~~g~~~~~-~~~~~l~~~i~~l~~~~---~~~~~~~~~~~~~~~ 348 (364)
T cd03814 278 TFGLVVLEAMASGLPVVAPDAG----GPADIVTD-GENGLLVEP-GDAEAFAAALAALLADP---ELRRRMAARARAEAE 348 (364)
T ss_pred cCCcHHHHHHHcCCCEEEcCCC----CchhhhcC-CcceEEcCC-CCHHHHHHHHHHHHcCH---HHHHHHHHHHHHHHh
Confidence 47899999999999998654 45667777 489988876 67888999999999984 333333332222222
Q ss_pred HhhcCCCcHHHHHHHHHHH
Q 046167 403 STRKGGFSYNSLNELLDLI 421 (424)
Q Consensus 403 ~~~~~g~~~~a~~~~~~~~ 421 (424)
. -+....++++++.+
T Consensus 349 ~----~~~~~~~~~~~~~~ 363 (364)
T cd03814 349 R----RSWEAFLDNLLEAY 363 (364)
T ss_pred h----cCHHHHHHHHHHhh
Confidence 2 45566777776654
No 44
>PLN02871 UDP-sulfoquinovose:DAG sulfoquinovosyltransferase
Probab=99.57 E-value=9e-12 Score=123.75 Aligned_cols=331 Identities=13% Similarity=0.036 Sum_probs=169.7
Q ss_pred CCceEEEEcCCC-----ccChHHHHHHHHHHHhCCCeEEEEeCCCCCCCCCCCCCceEEeCCCCCCCCccccccHHHHHH
Q 046167 7 RRRRVVLVPSPH-----QGHINPMLQLGTILHSKGFSITVVHTQFNSPNPSNHPEFEFQSIPDGLMDVNISARNLVDSIL 81 (424)
Q Consensus 7 ~~~ril~~~~~~-----~GH~~p~~~la~~L~~~Gh~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (424)
++|||+++..+. .|=-+.+..++++|.++||+|++++....... ...++....+.. .+.... .. . .
T Consensus 57 ~~mrI~~~~~~~~~~~~gG~~~~~~~l~~~L~~~G~eV~vlt~~~~~~~--~~~g~~v~~~~~-~~~~~~--~~---~-~ 127 (465)
T PLN02871 57 RPRRIALFVEPSPFSYVSGYKNRFQNFIRYLREMGDEVLVVTTDEGVPQ--EFHGAKVIGSWS-FPCPFY--QK---V-P 127 (465)
T ss_pred CCceEEEEECCcCCcccccHHHHHHHHHHHHHHCCCeEEEEecCCCCCc--cccCceeeccCC-cCCccC--CC---c-e
Confidence 379998885321 34446889999999999999999998633211 113444332211 000000 00 0 0
Q ss_pred HHHHhchhHHHHHHHHHHhhcCCCCCceEEEecCcc---chHHHHHHHhCCceEEEecchHHHHHHHHhhhcccccCCCC
Q 046167 82 LLNENCREPFRNWLVQMIKEQQPGDEIVCIIYDEVM---YFAEASASQLNVQSIILRTSGAVTVVARLVLFQLKEEGYNP 158 (424)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~pDlvi~d~~~---~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~~~p 158 (424)
... .....+...++.. +||+|++.... ..+..+|+..++|+|...+....... +.. .+
T Consensus 128 ~~~-~~~~~l~~~i~~~--------kpDiIh~~~~~~~~~~~~~~ak~~~ip~V~~~h~~~~~~~-----~~~---~~-- 188 (465)
T PLN02871 128 LSL-ALSPRIISEVARF--------KPDLIHASSPGIMVFGALFYAKLLCVPLVMSYHTHVPVYI-----PRY---TF-- 188 (465)
T ss_pred eec-cCCHHHHHHHHhC--------CCCEEEECCCchhHHHHHHHHHHhCCCEEEEEecCchhhh-----hcc---cc--
Confidence 000 0111222333343 89999876432 34456788999999986654321111 000 00
Q ss_pred CChhHHHHHHH--hhhccCCceEEecChhhhhHHHHHHHHhcc---CCCeeeecccccCCCCCCCCCccccccccccccc
Q 046167 159 LKESYVQLINN--AYSARTSSAVISNTIYCLEESVLSQLQQYF---KVPNFPIGPLHKFAPSSNGSLLKEDTSCISWLNN 233 (424)
Q Consensus 159 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~---~~~~~~vGp~~~~~~~~~~~~~~~~~~l~~~l~~ 233 (424)
. ...+.+.. ....+.++.++..+....+ .+.... ..++..+..-+.... .............+..
T Consensus 189 -~-~~~~~~~~~~r~~~~~ad~ii~~S~~~~~-----~l~~~~~~~~~kv~vi~nGvd~~~---f~p~~~~~~~~~~~~~ 258 (465)
T PLN02871 189 -S-WLVKPMWDIIRFLHRAADLTLVTSPALGK-----ELEAAGVTAANRIRVWNKGVDSES---FHPRFRSEEMRARLSG 258 (465)
T ss_pred -h-hhHHHHHHHHHHHHhhCCEEEECCHHHHH-----HHHHcCCCCcCeEEEeCCccCccc---cCCccccHHHHHHhcC
Confidence 0 00111111 1113456777776643221 111111 123333322111100 0000011111111111
Q ss_pred CCCCeEEEEEeCCcccCCHHHHHHHHHHHHhCC-CCeEEEEcCCCCCCCcccccCchhHHHHh-cCCCceeeecchhh--
Q 046167 234 QSPKSVIYVSLGSVASMDKKELEEMAWGLVNSK-QPFLWVIRPRTNNAPEGIELLPKVLAEDV-QENGYIVKWAPQKE-- 309 (424)
Q Consensus 234 ~~~~~~I~vs~Gs~~~~~~~~~~~~~~a~~~~~-~~~i~~~~~~~~~~~~~~~~l~~~~~~~~-~~nv~v~~~ip~~~-- 309 (424)
..++..+++..|+.. ..+.++.+++++++.+ .+++ +++.+ ...+.+.+.. ..|+.+.+++++.+
T Consensus 259 ~~~~~~~i~~vGrl~--~~K~~~~li~a~~~~~~~~l~-ivG~G---------~~~~~l~~~~~~~~V~f~G~v~~~ev~ 326 (465)
T PLN02871 259 GEPEKPLIVYVGRLG--AEKNLDFLKRVMERLPGARLA-FVGDG---------PYREELEKMFAGTPTVFTGMLQGDELS 326 (465)
T ss_pred CCCCCeEEEEeCCCc--hhhhHHHHHHHHHhCCCcEEE-EEeCC---------hHHHHHHHHhccCCeEEeccCCHHHHH
Confidence 122334556668876 4455666777877654 4443 33221 1122332222 25788889998654
Q ss_pred -hhccccccccccccc----hhhHHHhhhcCCceeecCcccchhhHHHHHHh---hhhcceecCcccchHHHHHHHHHHh
Q 046167 310 -VLSHVAVGGFWSHCG----WNSTLESICEGVPMICMPFFEDQKVNARYLSH---VWGVGLELEHELERGAVEKAVRKLT 381 (424)
Q Consensus 310 -ll~~~~~~~~i~hgG----~~t~~eal~~GvP~v~~P~~~DQ~~na~~~~~---~~G~g~~~~~~~~~~~L~~ai~~ll 381 (424)
++..+++ +|.-.. ..++.||+++|+|+|+.... .....+++ . +.|..++. -++++++++|.+++
T Consensus 327 ~~~~~aDv--~V~pS~~E~~g~~vlEAmA~G~PVI~s~~g----g~~eiv~~~~~~-~~G~lv~~-~d~~~la~~i~~ll 398 (465)
T PLN02871 327 QAYASGDV--FVMPSESETLGFVVLEAMASGVPVVAARAG----GIPDIIPPDQEG-KTGFLYTP-GDVDDCVEKLETLL 398 (465)
T ss_pred HHHHHCCE--EEECCcccccCcHHHHHHHcCCCEEEcCCC----CcHhhhhcCCCC-CceEEeCC-CCHHHHHHHHHHHH
Confidence 8877787 775433 35789999999999987543 23444444 5 78888876 58999999999999
Q ss_pred cccc-hHHHHHHHHH
Q 046167 382 VDKE-GEFLRQRAAQ 395 (424)
Q Consensus 382 ~~~~-~~~~~~~a~~ 395 (424)
+|++ ...+.+++++
T Consensus 399 ~~~~~~~~~~~~a~~ 413 (465)
T PLN02871 399 ADPELRERMGAAARE 413 (465)
T ss_pred hCHHHHHHHHHHHHH
Confidence 9843 2234444443
No 45
>PF04101 Glyco_tran_28_C: Glycosyltransferase family 28 C-terminal domain; InterPro: IPR007235 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC). Structural analysis suggests the C-terminal domain contains the UDP-GlcNAc binding site.; GO: 0016758 transferase activity, transferring hexosyl groups, 0030246 carbohydrate binding, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2KS6_A 2JZC_A 1NLM_B 1F0K_B.
Probab=99.51 E-value=1.1e-15 Score=129.96 Aligned_cols=134 Identities=22% Similarity=0.283 Sum_probs=94.0
Q ss_pred EEEEEeCCcccCCHHHHH---HHHHHHHh--CCCCeEEEEcCCCCCCCcccccCchhHHHHhcCCCceeeecc-hhhhhc
Q 046167 239 VIYVSLGSVASMDKKELE---EMAWGLVN--SKQPFLWVIRPRTNNAPEGIELLPKVLAEDVQENGYIVKWAP-QKEVLS 312 (424)
Q Consensus 239 ~I~vs~Gs~~~~~~~~~~---~~~~a~~~--~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~nv~v~~~ip-~~~ll~ 312 (424)
+|+|+.||.+. ..+.. .+...+.. ...+++++++... .......+ .....|+.+.+|++ ...++.
T Consensus 1 tilv~gGs~g~--~~l~~~v~~~~~~~~~~~~~~~viv~~G~~~------~~~~~~~~-~~~~~~v~~~~~~~~m~~~m~ 71 (167)
T PF04101_consen 1 TILVTGGSQGA--RDLNRLVLKILELLAEKHKNIQVIVQTGKNN------YEELKIKV-ENFNPNVKVFGFVDNMAELMA 71 (167)
T ss_dssp -EEEEETTTSH--HHHHCCCCCHHHHHHHHHHHCCCCCCCTTCE------CHHHCCCH-CCTTCCCEEECSSSSHHHHHH
T ss_pred CEEEEECCCCH--HHHHHHHHHHHHHHhhcCCCcEEEEEECCCc------HHHHHHHH-hccCCcEEEEechhhHHHHHH
Confidence 58999998874 22222 22333322 1367777774331 11111111 11226788999999 677998
Q ss_pred cccccccccccchhhHHHhhhcCCceeecCccc----chhhHHHHHHhhhhcceecCc-ccchHHHHHHHHHHhccc
Q 046167 313 HVAVGGFWSHCGWNSTLESICEGVPMICMPFFE----DQKVNARYLSHVWGVGLELEH-ELERGAVEKAVRKLTVDK 384 (424)
Q Consensus 313 ~~~~~~~i~hgG~~t~~eal~~GvP~v~~P~~~----DQ~~na~~~~~~~G~g~~~~~-~~~~~~L~~ai~~ll~~~ 384 (424)
.+|+ +|||||.+|++|++++|+|+|++|... +|..||..+++ .|+|..+.. ..+.+.|.++|.++++++
T Consensus 72 ~aDl--vIs~aG~~Ti~E~l~~g~P~I~ip~~~~~~~~q~~na~~~~~-~g~~~~~~~~~~~~~~L~~~i~~l~~~~ 145 (167)
T PF04101_consen 72 AADL--VISHAGAGTIAEALALGKPAIVIPLPGAADNHQEENAKELAK-KGAAIMLDESELNPEELAEAIEELLSDP 145 (167)
T ss_dssp HHSE--EEECS-CHHHHHHHHCT--EEEE--TTT-T-CHHHHHHHHHH-CCCCCCSECCC-SCCCHHHHHHCHCCCH
T ss_pred HcCE--EEeCCCccHHHHHHHcCCCeeccCCCCcchHHHHHHHHHHHH-cCCccccCcccCCHHHHHHHHHHHHcCc
Confidence 8888 999999999999999999999999987 99999999999 599999988 778999999999999983
No 46
>cd03823 GT1_ExpE7_like This family is most closely related to the GT1 family of glycosyltransferases. ExpE7 in Sinorhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucans (exopolysaccharide II).
Probab=99.49 E-value=4.6e-11 Score=113.92 Aligned_cols=308 Identities=13% Similarity=0.073 Sum_probs=158.5
Q ss_pred eEEEEcCC-----CccChHHHHHHHHHHHhCCCeEEEEeCCCCCCCCC-CCCCceEEeCCCCCCCCccccccHHHHHHHH
Q 046167 10 RVVLVPSP-----HQGHINPMLQLGTILHSKGFSITVVHTQFNSPNPS-NHPEFEFQSIPDGLMDVNISARNLVDSILLL 83 (424)
Q Consensus 10 ril~~~~~-----~~GH~~p~~~la~~L~~~Gh~V~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (424)
||++++.. ..|+-.-...++++|.++||+|++++......... ...+...........................
T Consensus 1 kIl~i~~~~~~~~~gG~~~~~~~l~~~L~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (359)
T cd03823 1 RILVVNHLYPPRSVGGAEVVAHDLAEALAKRGHEVAVLTAGEDPPRQDKEVIGVVVYGRPIDEVLRSALPRDLFHLSDYD 80 (359)
T ss_pred CeeEEcccCCcccccchHHHHHHHHHHHHhcCCceEEEeCCCCCCCcccccccceeeccccccccCCCchhhhhHHHhcc
Confidence 46666522 25777778899999999999999999863332211 1111211111100000000000011111111
Q ss_pred HHhchhHHHHHHHHHHhhcCCCCCceEEEecCccc---hHHHHHHHhCCceEEEecchHHHHHHHHhhhcccccCCCCCC
Q 046167 84 NENCREPFRNWLVQMIKEQQPGDEIVCIIYDEVMY---FAEASASQLNVQSIILRTSGAVTVVARLVLFQLKEEGYNPLK 160 (424)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~pDlvi~d~~~~---~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 160 (424)
...+...++.+++.. +||+|++..... .....++..++|++...+..+......
T Consensus 81 ~~~~~~~~~~~~~~~--------~~dii~~~~~~~~~~~~~~~~~~~~~~~i~~~hd~~~~~~~~--------------- 137 (359)
T cd03823 81 NPAVVAEFARLLEDF--------RPDVVHFHHLQGLGVSILRAARDRGIPIVLTLHDYWLICPRQ--------------- 137 (359)
T ss_pred CHHHHHHHHHHHHHc--------CCCEEEECCccchHHHHHHHHHhcCCCEEEEEeeeeeecchh---------------
Confidence 111222233334443 899999886442 233467788999998766432110000
Q ss_pred hhHHHHHHHhhhccCCceEEecChhhhhHHHHHHHHhccC--CCeeeecccccCCCCCCCCCcccccccccccccCCCCe
Q 046167 161 ESYVQLINNAYSARTSSAVISNTIYCLEESVLSQLQQYFK--VPNFPIGPLHKFAPSSNGSLLKEDTSCISWLNNQSPKS 238 (424)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~--~~~~~vGp~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~ 238 (424)
.......+.++..+-...+ .+..... .++..+........ .... .. ....++
T Consensus 138 ---------~~~~~~~d~ii~~s~~~~~-----~~~~~~~~~~~~~vi~n~~~~~~------~~~~---~~---~~~~~~ 191 (359)
T cd03823 138 ---------GLFKKGGDAVIAPSRFLLD-----RYVANGLFAEKISVIRNGIDLDR------AKRP---RR---APPGGR 191 (359)
T ss_pred ---------hhhccCCCEEEEeCHHHHH-----HHHHcCCCccceEEecCCcChhh------cccc---cc---CCCCCc
Confidence 0001222555555532211 1222111 23444433222211 0000 00 123345
Q ss_pred EEEEEeCCcccCCHHHHHHHHHHHHhC---CCCeEEEEcCCCCCCCcccccCchhHHHHhcCCCceeeecchhh---hhc
Q 046167 239 VIYVSLGSVASMDKKELEEMAWGLVNS---KQPFLWVIRPRTNNAPEGIELLPKVLAEDVQENGYIVKWAPQKE---VLS 312 (424)
Q Consensus 239 ~I~vs~Gs~~~~~~~~~~~~~~a~~~~---~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~nv~v~~~ip~~~---ll~ 312 (424)
.+++..|+... .+.+..+++++..+ +.+++ +++... . ...........+++.+.+++++.+ ++.
T Consensus 192 ~~i~~~G~~~~--~k~~~~li~~~~~l~~~~~~l~-i~G~~~-~------~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~ 261 (359)
T cd03823 192 LRFGFIGQLTP--HKGVDLLLEAFKRLPRGDIELV-IVGNGL-E------LEEESYELEGDPRVEFLGAYPQEEIDDFYA 261 (359)
T ss_pred eEEEEEecCcc--ccCHHHHHHHHHHHHhcCcEEE-EEcCch-h------hhHHHHhhcCCCeEEEeCCCCHHHHHHHHH
Confidence 66777788764 33344445555443 34443 332211 0 000010002347888899997655 687
Q ss_pred cccccccccc----cc-hhhHHHhhhcCCceeecCcccchhhHHHHHHhhhhcceecCcccchHHHHHHHHHHhccc
Q 046167 313 HVAVGGFWSH----CG-WNSTLESICEGVPMICMPFFEDQKVNARYLSHVWGVGLELEHELERGAVEKAVRKLTVDK 384 (424)
Q Consensus 313 ~~~~~~~i~h----gG-~~t~~eal~~GvP~v~~P~~~DQ~~na~~~~~~~G~g~~~~~~~~~~~L~~ai~~ll~~~ 384 (424)
.+++ +|+. .| ..++.||+++|+|+|+.+. ......+.+. +.|..+.. .+.+++.+++.++++|+
T Consensus 262 ~ad~--~i~ps~~~e~~~~~~~Ea~a~G~Pvi~~~~----~~~~e~i~~~-~~g~~~~~-~d~~~l~~~i~~l~~~~ 330 (359)
T cd03823 262 EIDV--LVVPSIWPENFPLVIREALAAGVPVIASDI----GGMAELVRDG-VNGLLFPP-GDAEDLAAALERLIDDP 330 (359)
T ss_pred hCCE--EEEcCcccCCCChHHHHHHHCCCCEEECCC----CCHHHHhcCC-CcEEEECC-CCHHHHHHHHHHHHhCh
Confidence 7777 6632 33 4578999999999999754 4566777773 78888877 57999999999999983
No 47
>cd03818 GT1_ExpC_like This family is most closely related to the GT1 family of glycosyltransferases. ExpC in Rhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucan (exopolysaccharide II).
Probab=99.48 E-value=3.2e-11 Score=117.46 Aligned_cols=337 Identities=12% Similarity=0.062 Sum_probs=165.5
Q ss_pred eEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCCCCCCCCCCCCCceEEeCCCCCCCCccccccHHHHHHHHHHhchh
Q 046167 10 RVVLVPSPHQGHINPMLQLGTILHSKGFSITVVHTQFNSPNPSNHPEFEFQSIPDGLMDVNISARNLVDSILLLNENCRE 89 (424)
Q Consensus 10 ril~~~~~~~GH~~p~~~la~~L~~~Gh~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (424)
||||+.....|. +..||++|.++||+|+++|......... |++.+.++..-.... ........+.........
T Consensus 1 ~il~~~~~~p~~---~~~la~~L~~~G~~v~~~~~~~~~~~~~---~v~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 73 (396)
T cd03818 1 RILFVHQNFPGQ---FRHLAPALAAQGHEVVFLTEPNAAPPPG---GVRVVRYRPPRGPTS-GTHPYLREFEEAVLRGQA 73 (396)
T ss_pred CEEEECCCCchh---HHHHHHHHHHCCCEEEEEecCCCCCCCC---CeeEEEecCCCCCCC-CCCccchhHHHHHHHHHH
Confidence 577776555544 5779999999999999999864433211 677777763322111 111111112211111112
Q ss_pred HHHHHHHHHHhhcCCCCCceEEEecCccchHHHHHHHh-CCceEEEecchHHHHHHHHhhhcccccCCCCCC-hhH--HH
Q 046167 90 PFRNWLVQMIKEQQPGDEIVCIIYDEVMYFAEASASQL-NVQSIILRTSGAVTVVARLVLFQLKEEGYNPLK-ESY--VQ 165 (424)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~pDlvi~d~~~~~~~~~A~~l-giP~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~-~~~--~~ 165 (424)
.++ .+..+... +. +||+|++......+..+.+.+ ++|.+.+......... ....+.+.. ... ..
T Consensus 74 ~~~-~~~~~~~~-~~--~pdvi~~h~~~~~~~~l~~~~~~~~~v~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~ 141 (396)
T cd03818 74 VAR-ALLALRAK-GF--RPDVIVAHPGWGETLFLKDVWPDAPLIGYFEFYYRAEG--------ADVGFDPEFPPSLDDAL 141 (396)
T ss_pred HHH-HHHHHHhc-CC--CCCEEEECCccchhhhHHHhCCCCCEEEEEeeeecCCC--------CCCCCCCCCCCchhHHH
Confidence 222 22222211 12 799999997665566666665 5898886543221110 001111110 000 01
Q ss_pred HHHH-----hhhccCCceEEecChhhhhHHHHHHHHhccCCCeeeecccccCCCCCCCCCccccccccccccc--CCCCe
Q 046167 166 LINN-----AYSARTSSAVISNTIYCLEESVLSQLQQYFKVPNFPIGPLHKFAPSSNGSLLKEDTSCISWLNN--QSPKS 238 (424)
Q Consensus 166 ~~~~-----~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vGp~~~~~~~~~~~~~~~~~~l~~~l~~--~~~~~ 238 (424)
.++. ......++.++..+-...+ .+.+.++.++..+..-+.... ..+....-...-.. ..++.
T Consensus 142 ~~~~~~~~~~~~~~~ad~vi~~s~~~~~-----~~~~~~~~ki~vI~ngvd~~~-----f~~~~~~~~~~~~~~~~~~~~ 211 (396)
T cd03818 142 RLRNRNALILLALAQADAGVSPTRWQRS-----TFPAELRSRISVIHDGIDTDR-----LRPDPQARLRLPNGRVLTPGD 211 (396)
T ss_pred HHHHhhhHhHHHHHhCCEEECCCHHHHh-----hCcHhhccceEEeCCCccccc-----cCCCchhhhcccccccCCCCC
Confidence 1111 1335667888877644322 111112233333332221110 00000000000000 01222
Q ss_pred EEEEEeCC-cccCCHHHHHHHHHHHHhC-----CCCeEEEEcCCC-CCCCcc--cccCchhHHHHh-----cCCCceeee
Q 046167 239 VIYVSLGS-VASMDKKELEEMAWGLVNS-----KQPFLWVIRPRT-NNAPEG--IELLPKVLAEDV-----QENGYIVKW 304 (424)
Q Consensus 239 ~I~vs~Gs-~~~~~~~~~~~~~~a~~~~-----~~~~i~~~~~~~-~~~~~~--~~~l~~~~~~~~-----~~nv~v~~~ 304 (424)
.+++..|. .. +.+-+..+++++..+ +.+++ +++++. ..|... .+...+.+.+.. .++|.+.++
T Consensus 212 ~~i~~vgR~l~--~~Kg~~~ll~a~~~l~~~~~~~~lv-ivG~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~V~f~G~ 288 (396)
T cd03818 212 EVITFVARNLE--PYRGFHVFMRALPRLLRARPDARVV-IVGGDGVSYGAPPPDGESWKQHMLDELGGRLDLSRVHFLGR 288 (396)
T ss_pred eEEEEECCCcc--cccCHHHHHHHHHHHHHHCCCcEEE-EEcCCCcccCCCCCCcccHHHHHHHHhhcccCcceEEEeCC
Confidence 34445564 43 233333344444322 33443 333221 011000 000111222222 368888999
Q ss_pred cchhh---hhccccccccccc-cc-hhhHHHhhhcCCceeecCcccchhhHHHHHHhhhhcceecCcccchHHHHHHHHH
Q 046167 305 APQKE---VLSHVAVGGFWSH-CG-WNSTLESICEGVPMICMPFFEDQKVNARYLSHVWGVGLELEHELERGAVEKAVRK 379 (424)
Q Consensus 305 ip~~~---ll~~~~~~~~i~h-gG-~~t~~eal~~GvP~v~~P~~~DQ~~na~~~~~~~G~g~~~~~~~~~~~L~~ai~~ 379 (424)
+|+.+ ++..+++-++.+. .| ..++.||+++|+|+|+. |.......+... ..|..++. .++++|+++|.+
T Consensus 289 v~~~~~~~~l~~adv~v~~s~~e~~~~~llEAmA~G~PVIas----~~~g~~e~i~~~-~~G~lv~~-~d~~~la~~i~~ 362 (396)
T cd03818 289 VPYDQYLALLQVSDVHVYLTYPFVLSWSLLEAMACGCLVVGS----DTAPVREVITDG-ENGLLVDF-FDPDALAAAVIE 362 (396)
T ss_pred CCHHHHHHHHHhCcEEEEcCcccccchHHHHHHHCCCCEEEc----CCCCchhhcccC-CceEEcCC-CCHHHHHHHHHH
Confidence 99765 6777777322232 22 24789999999999997 344566677764 67887776 689999999999
Q ss_pred Hhccc
Q 046167 380 LTVDK 384 (424)
Q Consensus 380 ll~~~ 384 (424)
+++|+
T Consensus 363 ll~~~ 367 (396)
T cd03818 363 LLDDP 367 (396)
T ss_pred HHhCH
Confidence 99984
No 48
>cd04962 GT1_like_5 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=99.45 E-value=6.4e-11 Score=114.06 Aligned_cols=350 Identities=14% Similarity=0.087 Sum_probs=176.3
Q ss_pred ceEEEEcCC-CccChHHHHHHHHHHHhCCCeEEEEeCCCCCCCCCCCCCceEEeCCCCCCCCccccccHHHHHHHHHHhc
Q 046167 9 RRVVLVPSP-HQGHINPMLQLGTILHSKGFSITVVHTQFNSPNPSNHPEFEFQSIPDGLMDVNISARNLVDSILLLNENC 87 (424)
Q Consensus 9 ~ril~~~~~-~~GH~~p~~~la~~L~~~Gh~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (424)
|||++++.| .+|.-.-...+|+.|.++||+|++++...........+++.+..++...... . .... ... ..
T Consensus 1 mki~~~~~p~~gG~~~~~~~la~~L~~~G~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~----~~~-~~ 72 (371)
T cd04962 1 MKIGIVCYPTYGGSGVVATELGKALARRGHEVHFITSSRPFRLDEYSPNIFFHEVEVPQYPL--F-QYPP----YDL-AL 72 (371)
T ss_pred CceeEEEEeCCCCccchHHHHHHHHHhcCCceEEEecCCCcchhhhccCeEEEEecccccch--h-hcch----hHH-HH
Confidence 477777765 4466666889999999999999999875332222222455554433110000 0 0000 000 01
Q ss_pred hhHHHHHHHHHHhhcCCCCCceEEEecCccc--hHHHHHHH-h---CCceEEEecchHHHHHHHHhhhcccccCCCCCCh
Q 046167 88 REPFRNWLVQMIKEQQPGDEIVCIIYDEVMY--FAEASASQ-L---NVQSIILRTSGAVTVVARLVLFQLKEEGYNPLKE 161 (424)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~pDlvi~d~~~~--~~~~~A~~-l---giP~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 161 (424)
...+..+++.. +||+|.+..... ....++.+ . ++|++...+....... ...+.
T Consensus 73 ~~~l~~~i~~~--------~~divh~~~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~-----------~~~~~-- 131 (371)
T cd04962 73 ASKIAEVAKRY--------KLDLLHVHYAVPHAVAAYLAREILGKKDLPVVTTLHGTDITLV-----------GQDPS-- 131 (371)
T ss_pred HHHHHHHHhcC--------CccEEeecccCCccHHHHHHHHhcCcCCCcEEEEEcCCccccc-----------ccccc--
Confidence 11222233333 899999864321 22233433 2 7999887664321100 00000
Q ss_pred hHHHHHHHhhhccCCceEEecChhhhhHHHHHHHHhcc--CCCeeeecccccCCCCCCCCCcccccccccccccCCCCeE
Q 046167 162 SYVQLINNAYSARTSSAVISNTIYCLEESVLSQLQQYF--KVPNFPIGPLHKFAPSSNGSLLKEDTSCISWLNNQSPKSV 239 (424)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~--~~~~~~vGp~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~ 239 (424)
...+.+ .....++.++..+-...+ .+...+ ..++..++........ .. ..+....+... ..++..
T Consensus 132 --~~~~~~-~~~~~~d~ii~~s~~~~~-----~~~~~~~~~~~i~vi~n~~~~~~~---~~-~~~~~~~~~~~-~~~~~~ 198 (371)
T cd04962 132 --FQPATR-FSIEKSDGVTAVSESLRQ-----ETYELFDITKEIEVIPNFVDEDRF---RP-KPDEALKRRLG-APEGEK 198 (371)
T ss_pred --chHHHH-HHHhhCCEEEEcCHHHHH-----HHHHhcCCcCCEEEecCCcCHhhc---CC-CchHHHHHhcC-CCCCCe
Confidence 011111 113456777766643222 111111 1334455433322110 00 01111111122 122346
Q ss_pred EEEEeCCcccCCHHHHHHHHHHHHh----CCCCeEEEEcCCCCCCCcccccCchhHHH-HhcCCCceeeecchh-hhhcc
Q 046167 240 IYVSLGSVASMDKKELEEMAWGLVN----SKQPFLWVIRPRTNNAPEGIELLPKVLAE-DVQENGYIVKWAPQK-EVLSH 313 (424)
Q Consensus 240 I~vs~Gs~~~~~~~~~~~~~~a~~~----~~~~~i~~~~~~~~~~~~~~~~l~~~~~~-~~~~nv~v~~~ip~~-~ll~~ 313 (424)
+++.+|.... .+.+..+++++.. .+.++++.- .+. . ...+.....+ ...+++.+.++.++. .++..
T Consensus 199 ~il~~g~l~~--~K~~~~li~a~~~l~~~~~~~l~i~G-~g~-~----~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~ 270 (371)
T cd04962 199 VLIHISNFRP--VKRIDDVIRIFAKVRKEVPARLLLVG-DGP-E----RSPAERLARELGLQDDVLFLGKQDHVEELLSI 270 (371)
T ss_pred EEEEeccccc--ccCHHHHHHHHHHHHhcCCceEEEEc-CCc-C----HHHHHHHHHHcCCCceEEEecCcccHHHHHHh
Confidence 6677787763 3333444444432 244444332 211 0 0111111111 123678888887653 48877
Q ss_pred ccccccccc----cchhhHHHhhhcCCceeecCcccchhhHHHHHHhhhhcceecCcccchHHHHHHHHHHhcccc-hHH
Q 046167 314 VAVGGFWSH----CGWNSTLESICEGVPMICMPFFEDQKVNARYLSHVWGVGLELEHELERGAVEKAVRKLTVDKE-GEF 388 (424)
Q Consensus 314 ~~~~~~i~h----gG~~t~~eal~~GvP~v~~P~~~DQ~~na~~~~~~~G~g~~~~~~~~~~~L~~ai~~ll~~~~-~~~ 388 (424)
+++ +|.- |...++.||+++|+|+|+... ...+..+++. ..|..++. .+.+++.++|.++++|++ ...
T Consensus 271 ~d~--~v~ps~~E~~~~~~~EAma~g~PvI~s~~----~~~~e~i~~~-~~G~~~~~-~~~~~l~~~i~~l~~~~~~~~~ 342 (371)
T cd04962 271 ADL--FLLPSEKESFGLAALEAMACGVPVVASNA----GGIPEVVKHG-ETGFLVDV-GDVEAMAEYALSLLEDDELWQE 342 (371)
T ss_pred cCE--EEeCCCcCCCccHHHHHHHcCCCEEEeCC----CCchhhhcCC-CceEEcCC-CCHHHHHHHHHHHHhCHHHHHH
Confidence 777 5532 335689999999999999643 4566777774 77877766 688999999999998842 223
Q ss_pred HHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHhc
Q 046167 389 LRQRAAQLKEEVELSTRKGGFSYNSLNELLDLINK 423 (424)
Q Consensus 389 ~~~~a~~l~~~~~~~~~~~g~~~~a~~~~~~~~~~ 423 (424)
+++++++. +.+. -+....++.+.+.+++
T Consensus 343 ~~~~~~~~---~~~~----fs~~~~~~~~~~~y~~ 370 (371)
T cd04962 343 FSRAARNR---AAER----FDSERIVPQYEALYRR 370 (371)
T ss_pred HHHHHHHH---HHHh----CCHHHHHHHHHHHHHh
Confidence 33333332 1222 5566778888877765
No 49
>PRK10307 putative glycosyl transferase; Provisional
Probab=99.44 E-value=1.6e-10 Score=113.13 Aligned_cols=366 Identities=12% Similarity=0.005 Sum_probs=178.7
Q ss_pred ceEEEEcC---CCcc-ChHHHHHHHHHHHhCCCeEEEEeCCCCCCC-------------CCCCCCceEEeCCCCCCCCcc
Q 046167 9 RRVVLVPS---PHQG-HINPMLQLGTILHSKGFSITVVHTQFNSPN-------------PSNHPEFEFQSIPDGLMDVNI 71 (424)
Q Consensus 9 ~ril~~~~---~~~G-H~~p~~~la~~L~~~Gh~V~~~~~~~~~~~-------------~~~~~g~~~~~~~~~~~~~~~ 71 (424)
|||++++. |..| =-.....|+++|.++||+|+++|+.+.... .....|+++..++...+..
T Consensus 1 mkIlii~~~~~P~~~g~~~~~~~l~~~L~~~G~~V~vit~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~r~~~~~~~~-- 78 (412)
T PRK10307 1 MKILVYGINYAPELTGIGKYTGEMAEWLAARGHEVRVITAPPYYPQWRVGEGYSAWRYRRESEGGVTVWRCPLYVPKQ-- 78 (412)
T ss_pred CeEEEEecCCCCCccchhhhHHHHHHHHHHCCCeEEEEecCCCCCCCCCCcccccccceeeecCCeEEEEccccCCCC--
Confidence 57888872 3222 112467999999999999999997632111 1112466666665322111
Q ss_pred ccccHHHHHHHHHHhchhHHHHHHHHHHhhcCCCCCceEEEecCcc----chHHHHHHHhCCceEEEecchHHHHHHHHh
Q 046167 72 SARNLVDSILLLNENCREPFRNWLVQMIKEQQPGDEIVCIIYDEVM----YFAEASASQLNVQSIILRTSGAVTVVARLV 147 (424)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pDlvi~d~~~----~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~ 147 (424)
.......+... ......+..+.+.+. . +||+|++.... ..+..+|+.+++|++.............
T Consensus 79 -~~~~~~~~~~~-~~~~~~~~~~~~~~~-~-----~~Div~~~~p~~~~~~~~~~~~~~~~~~~v~~~~d~~~~~~~~-- 148 (412)
T PRK10307 79 -PSGLKRLLHLG-SFALSSFFPLLAQRR-W-----RPDRVIGVVPTLFCAPGARLLARLSGARTWLHIQDYEVDAAFG-- 148 (412)
T ss_pred -ccHHHHHHHHH-HHHHHHHHHHhhccC-C-----CCCEEEEeCCcHHHHHHHHHHHHhhCCCEEEEeccCCHHHHHH--
Confidence 11111111111 011111222222221 1 89999996422 3455788899999987654432111100
Q ss_pred hhcccccCCCCCCh--hHHHHHHHhhhccCCceEEecChhhhhHHHHHHHHhc-cC-CCeeeecccccCCCCCCCCCccc
Q 046167 148 LFQLKEEGYNPLKE--SYVQLINNAYSARTSSAVISNTIYCLEESVLSQLQQY-FK-VPNFPIGPLHKFAPSSNGSLLKE 223 (424)
Q Consensus 148 ~~~~~~~~~~p~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~-~~~~~vGp~~~~~~~~~~~~~~~ 223 (424)
.+...... .....+.+ .....++.++..+-...+ .+... .+ .++..+..-.....- .....+.
T Consensus 149 ------~~~~~~~~~~~~~~~~~~-~~~~~ad~ii~~S~~~~~-----~~~~~~~~~~~i~vi~ngvd~~~~-~~~~~~~ 215 (412)
T PRK10307 149 ------LGLLKGGKVARLATAFER-SLLRRFDNVSTISRSMMN-----KAREKGVAAEKVIFFPNWSEVARF-QPVADAD 215 (412)
T ss_pred ------hCCccCcHHHHHHHHHHH-HHHhhCCEEEecCHHHHH-----HHHHcCCCcccEEEECCCcCHhhc-CCCCccc
Confidence 01111000 00111111 123457777776543222 11221 11 234444322211100 0000000
Q ss_pred ccccccccccCCCCeEEEEEeCCcccCCHHHHHHHHHHHHhCC--CCeEEEEcCCCCCCCcccccCchhHHHH---h-cC
Q 046167 224 DTSCISWLNNQSPKSVIYVSLGSVASMDKKELEEMAWGLVNSK--QPFLWVIRPRTNNAPEGIELLPKVLAED---V-QE 297 (424)
Q Consensus 224 ~~~l~~~l~~~~~~~~I~vs~Gs~~~~~~~~~~~~~~a~~~~~--~~~i~~~~~~~~~~~~~~~~l~~~~~~~---~-~~ 297 (424)
...+.+-+. .++++.+++..|+.. +.+-++.++++++.+. .++.+.+-|++ ...+.+.+. . .+
T Consensus 216 ~~~~~~~~~-~~~~~~~i~~~G~l~--~~kg~~~li~a~~~l~~~~~~~l~ivG~g--------~~~~~l~~~~~~~~l~ 284 (412)
T PRK10307 216 VDALRAQLG-LPDGKKIVLYSGNIG--EKQGLELVIDAARRLRDRPDLIFVICGQG--------GGKARLEKMAQCRGLP 284 (412)
T ss_pred hHHHHHHcC-CCCCCEEEEEcCccc--cccCHHHHHHHHHHhccCCCeEEEEECCC--------hhHHHHHHHHHHcCCC
Confidence 000111111 123345666678876 3444555556655432 22333333321 112222221 1 15
Q ss_pred CCceeeecchhh---hhccccccccccccc------hhhHHHhhhcCCceeecCcccchhhHHHHHHhhhhcceecCccc
Q 046167 298 NGYIVKWAPQKE---VLSHVAVGGFWSHCG------WNSTLESICEGVPMICMPFFEDQKVNARYLSHVWGVGLELEHEL 368 (424)
Q Consensus 298 nv~v~~~ip~~~---ll~~~~~~~~i~hgG------~~t~~eal~~GvP~v~~P~~~DQ~~na~~~~~~~G~g~~~~~~~ 368 (424)
|+.+.+++|+.+ ++..+++-++.+..+ .+.+.|++++|+|+|+....+. .....++ +.|+.++. -
T Consensus 285 ~v~f~G~~~~~~~~~~~~~aDi~v~ps~~e~~~~~~p~kl~eama~G~PVi~s~~~g~--~~~~~i~---~~G~~~~~-~ 358 (412)
T PRK10307 285 NVHFLPLQPYDRLPALLKMADCHLLPQKAGAADLVLPSKLTNMLASGRNVVATAEPGT--ELGQLVE---GIGVCVEP-E 358 (412)
T ss_pred ceEEeCCCCHHHHHHHHHhcCEeEEeeccCcccccCcHHHHHHHHcCCCEEEEeCCCc--hHHHHHh---CCcEEeCC-C
Confidence 788899998764 788888744444433 2347899999999999865331 1122222 56766765 6
Q ss_pred chHHHHHHHHHHhcccc-hHHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHhc
Q 046167 369 ERGAVEKAVRKLTVDKE-GEFLRQRAAQLKEEVELSTRKGGFSYNSLNELLDLINK 423 (424)
Q Consensus 369 ~~~~L~~ai~~ll~~~~-~~~~~~~a~~l~~~~~~~~~~~g~~~~a~~~~~~~~~~ 423 (424)
+.++|+++|.++++|++ ...+++++++.. ++.-+....++.+++.+++
T Consensus 359 d~~~la~~i~~l~~~~~~~~~~~~~a~~~~-------~~~fs~~~~~~~~~~~~~~ 407 (412)
T PRK10307 359 SVEALVAAIAALARQALLRPKLGTVAREYA-------ERTLDKENVLRQFIADIRG 407 (412)
T ss_pred CHHHHHHHHHHHHhCHHHHHHHHHHHHHHH-------HHHcCHHHHHHHHHHHHHH
Confidence 89999999999998842 223344443322 2224556677777776654
No 50
>TIGR03449 mycothiol_MshA UDP-N-acetylglucosamine: 1L-myo-inositol-1-phosphate 1-alpha-D-N-acetylglucosaminyltransferase. Members of this protein family, found exclusively in the Actinobacteria, are MshA, the glycosyltransferase of mycothiol biosynthesis. Mycothiol replaces glutathione in these species.
Probab=99.41 E-value=2.4e-10 Score=111.69 Aligned_cols=357 Identities=13% Similarity=0.055 Sum_probs=177.1
Q ss_pred CccChHHHHHHHHHHHhCCCeEEEEeCCCCCC---CCCCCCCceEEeCCCCCCCCccccccHHHHHHHHHHhchhHHHHH
Q 046167 18 HQGHINPMLQLGTILHSKGFSITVVHTQFNSP---NPSNHPEFEFQSIPDGLMDVNISARNLVDSILLLNENCREPFRNW 94 (424)
Q Consensus 18 ~~GH~~p~~~la~~L~~~Gh~V~~~~~~~~~~---~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (424)
.+|--.-...||++|.++||+|+++|+..... ......|+++..++..--.. .........+..... ..
T Consensus 19 ~GG~e~~v~~la~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~----~~~~~~~~~~~~~~~----~~ 90 (405)
T TIGR03449 19 AGGMNVYILETATELARRGIEVDIFTRATRPSQPPVVEVAPGVRVRNVVAGPYEG----LDKEDLPTQLCAFTG----GV 90 (405)
T ss_pred CCCceehHHHHHHHHhhCCCEEEEEecccCCCCCCccccCCCcEEEEecCCCccc----CCHHHHHHHHHHHHH----HH
Confidence 35666778999999999999999999753221 12223577777765321110 011111111111111 12
Q ss_pred HHHHHhhcCCCCCceEEEecCcc--chHHHHHHHhCCceEEEecchHHHHHHHHhhhcccccCCCCCChhHHHHHHHhhh
Q 046167 95 LVQMIKEQQPGDEIVCIIYDEVM--YFAEASASQLNVQSIILRTSGAVTVVARLVLFQLKEEGYNPLKESYVQLINNAYS 172 (424)
Q Consensus 95 ~~~~~~~~~~~~~pDlvi~d~~~--~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~ 172 (424)
+..+...... +||+|.+.... ..+..+++.+++|+|.+.+.......... . ....+... ...+.....
T Consensus 91 ~~~~~~~~~~--~~Diih~h~~~~~~~~~~~~~~~~~p~v~t~h~~~~~~~~~~--~----~~~~~~~~--~~~~~e~~~ 160 (405)
T TIGR03449 91 LRAEARHEPG--YYDLIHSHYWLSGQVGWLLRDRWGVPLVHTAHTLAAVKNAAL--A----DGDTPEPE--ARRIGEQQL 160 (405)
T ss_pred HHHHhhccCC--CCCeEEechHHHHHHHHHHHHhcCCCEEEeccchHHHHHHhc--c----CCCCCchH--HHHHHHHHH
Confidence 2222221111 79999887633 44556778889999987776432111100 0 00011100 111111112
Q ss_pred ccCCceEEecChhhhhHHHHHHHHhccCCCeeeecccccCCCCCCCCCccc-ccccccccccCCCCeEEEEEeCCcccCC
Q 046167 173 ARTSSAVISNTIYCLEESVLSQLQQYFKVPNFPIGPLHKFAPSSNGSLLKE-DTSCISWLNNQSPKSVIYVSLGSVASMD 251 (424)
Q Consensus 173 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vGp~~~~~~~~~~~~~~~-~~~l~~~l~~~~~~~~I~vs~Gs~~~~~ 251 (424)
...++.++..+-..... ...... .-..++..+..-..... ..+. .......+. .++++.+++.+|+...
T Consensus 161 ~~~~d~vi~~s~~~~~~-~~~~~~-~~~~ki~vi~ngvd~~~-----~~~~~~~~~~~~~~-~~~~~~~i~~~G~l~~-- 230 (405)
T TIGR03449 161 VDNADRLIANTDEEARD-LVRHYD-ADPDRIDVVAPGADLER-----FRPGDRATERARLG-LPLDTKVVAFVGRIQP-- 230 (405)
T ss_pred HHhcCeEEECCHHHHHH-HHHHcC-CChhhEEEECCCcCHHH-----cCCCcHHHHHHhcC-CCCCCcEEEEecCCCc--
Confidence 45677777776433221 111110 00122433332221100 0000 111111122 1223466677788774
Q ss_pred HHHHHHHHHHHHhC----C-CCeEE-EEcCCCCCCCcccccCchhHHH---H--hcCCCceeeecchhh---hhcccccc
Q 046167 252 KKELEEMAWGLVNS----K-QPFLW-VIRPRTNNAPEGIELLPKVLAE---D--VQENGYIVKWAPQKE---VLSHVAVG 317 (424)
Q Consensus 252 ~~~~~~~~~a~~~~----~-~~~i~-~~~~~~~~~~~~~~~l~~~~~~---~--~~~nv~v~~~ip~~~---ll~~~~~~ 317 (424)
.+.+..++++++.+ + .++.+ ++++....|. ...+.+.+ . +.+++.+.+++++.+ ++..+++
T Consensus 231 ~K~~~~li~a~~~l~~~~~~~~~~l~ivG~~~~~g~----~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~l~~ad~- 305 (405)
T TIGR03449 231 LKAPDVLLRAVAELLDRDPDRNLRVIVVGGPSGSGL----ATPDALIELAAELGIADRVRFLPPRPPEELVHVYRAADV- 305 (405)
T ss_pred ccCHHHHHHHHHHHHhhCCCcceEEEEEeCCCCCcc----hHHHHHHHHHHHcCCCceEEECCCCCHHHHHHHHHhCCE-
Confidence 33333344444322 2 12333 3332211110 11122221 2 236788999998754 7878887
Q ss_pred ccccc---cc-hhhHHHhhhcCCceeecCcccchhhHHHHHHhhhhcceecCcccchHHHHHHHHHHhcccc-hHHHHHH
Q 046167 318 GFWSH---CG-WNSTLESICEGVPMICMPFFEDQKVNARYLSHVWGVGLELEHELERGAVEKAVRKLTVDKE-GEFLRQR 392 (424)
Q Consensus 318 ~~i~h---gG-~~t~~eal~~GvP~v~~P~~~DQ~~na~~~~~~~G~g~~~~~~~~~~~L~~ai~~ll~~~~-~~~~~~~ 392 (424)
+|.- .| ..++.||+++|+|+|+... ......+.+. +.|..++. -+.++++++|.++++|++ ...++++
T Consensus 306 -~v~ps~~E~~g~~~lEAma~G~Pvi~~~~----~~~~e~i~~~-~~g~~~~~-~d~~~la~~i~~~l~~~~~~~~~~~~ 378 (405)
T TIGR03449 306 -VAVPSYNESFGLVAMEAQACGTPVVAARV----GGLPVAVADG-ETGLLVDG-HDPADWADALARLLDDPRTRIRMGAA 378 (405)
T ss_pred -EEECCCCCCcChHHHHHHHcCCCEEEecC----CCcHhhhccC-CceEECCC-CCHHHHHHHHHHHHhCHHHHHHHHHH
Confidence 5532 23 4589999999999999754 3455566664 77887776 689999999999999842 2233334
Q ss_pred HHHHHHHHHHHhhcCCCcHHHHHHHHHHHh
Q 046167 393 AAQLKEEVELSTRKGGFSYNSLNELLDLIN 422 (424)
Q Consensus 393 a~~l~~~~~~~~~~~g~~~~a~~~~~~~~~ 422 (424)
+++.. +. -+-...++++++.+.
T Consensus 379 ~~~~~----~~----fsw~~~~~~~~~~y~ 400 (405)
T TIGR03449 379 AVEHA----AG----FSWAATADGLLSSYR 400 (405)
T ss_pred HHHHH----Hh----CCHHHHHHHHHHHHH
Confidence 33322 21 344555666665554
No 51
>cd03794 GT1_wbuB_like This family is most closely related to the GT1 family of glycosyltransferases. wbuB in E. coli is involved in the biosynthesis of the O26 O-antigen. It has been proposed to function as an N-acetyl-L-fucosamine (L-FucNAc) transferase.
Probab=99.41 E-value=1.8e-10 Score=110.88 Aligned_cols=328 Identities=16% Similarity=0.080 Sum_probs=165.2
Q ss_pred eEEEEcCC----CccChHHHHHHHHHHHhCCCeEEEEeCCCCCCCCC--------CCCCceEEeCCCCCCCCccccccHH
Q 046167 10 RVVLVPSP----HQGHINPMLQLGTILHSKGFSITVVHTQFNSPNPS--------NHPEFEFQSIPDGLMDVNISARNLV 77 (424)
Q Consensus 10 ril~~~~~----~~GH~~p~~~la~~L~~~Gh~V~~~~~~~~~~~~~--------~~~g~~~~~~~~~~~~~~~~~~~~~ 77 (424)
||++++.. ..|+-.....++++|+++||+|++++......... ...++.+..++...... ....
T Consensus 1 kIl~i~~~~~~~~~G~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~ 76 (394)
T cd03794 1 KILILSQYFPPELGGGAFRTTELAEELVKRGHEVTVITGSPNYPSGKIYKGYKREEVDGVRVHRVPLPPYKK----NGLL 76 (394)
T ss_pred CEEEEecccCCccCCcceeHHHHHHHHHhCCceEEEEecCCCcccccccccceEEecCCeEEEEEecCCCCc----cchH
Confidence 46666633 25899999999999999999999999753332211 22466666555321111 1111
Q ss_pred HHHHHHHHhchhHHHHHHHHHHhhcCCCCCceEEEecCcc----chHHHHHHHhCCceEEEecchHHHHHHHHhhhcccc
Q 046167 78 DSILLLNENCREPFRNWLVQMIKEQQPGDEIVCIIYDEVM----YFAEASASQLNVQSIILRTSGAVTVVARLVLFQLKE 153 (424)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pDlvi~d~~~----~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~ 153 (424)
..+................ ... +||+|++.... ..+..+++..++|++...+..+.......
T Consensus 77 ~~~~~~~~~~~~~~~~~~~--~~~-----~~D~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~------- 142 (394)
T cd03794 77 KRLLNYLSFALSALLALLK--RRR-----RPDVIIATSPPLLIALAALLLARLKGAPFVLEVRDLWPESAVAL------- 142 (394)
T ss_pred HHHHhhhHHHHHHHHHHHh--ccc-----CCCEEEEcCChHHHHHHHHHHHHhcCCCEEEEehhhcchhHHHc-------
Confidence 1111111111111111111 111 89999998622 33345666679999987665432211110
Q ss_pred cCCCCCChhHHHHHHH--hhhccCCceEEecChhhhhHHHHHHHH-hcc-CCCeeeecccccCCCCCCCCCccccccccc
Q 046167 154 EGYNPLKESYVQLINN--AYSARTSSAVISNTIYCLEESVLSQLQ-QYF-KVPNFPIGPLHKFAPSSNGSLLKEDTSCIS 229 (424)
Q Consensus 154 ~~~~p~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~-~~~~~~vGp~~~~~~~~~~~~~~~~~~l~~ 229 (424)
............+.. ......++.++..+-...+ .+. ... ..++..+......... ...........
T Consensus 143 -~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~s~~~~~-----~~~~~~~~~~~~~~i~~~~~~~~~---~~~~~~~~~~~ 213 (394)
T cd03794 143 -GLLKNGSLLYRLLRKLERLIYRRADAIVVISPGMRE-----YLVRRGVPPEKISVIPNGVDLELF---KPPPADESLRK 213 (394)
T ss_pred -cCccccchHHHHHHHHHHHHHhcCCEEEEECHHHHH-----HHHhcCCCcCceEEcCCCCCHHHc---CCccchhhhhh
Confidence 000000000022222 2224556777766543222 111 111 1234444433322110 00000000011
Q ss_pred ccccCCCCeEEEEEeCCccc-CCHHHHHHHHHHHHhC-CCCeEEEEcCCCCCCCcccccCchhHHH----HhcCCCceee
Q 046167 230 WLNNQSPKSVIYVSLGSVAS-MDKKELEEMAWGLVNS-KQPFLWVIRPRTNNAPEGIELLPKVLAE----DVQENGYIVK 303 (424)
Q Consensus 230 ~l~~~~~~~~I~vs~Gs~~~-~~~~~~~~~~~a~~~~-~~~~i~~~~~~~~~~~~~~~~l~~~~~~----~~~~nv~v~~ 303 (424)
.. ...++.+++..|+... ...+.+..++..+.+. +..++ +++.+. ..+.+.+ ...+|+.+.+
T Consensus 214 ~~--~~~~~~~i~~~G~~~~~k~~~~l~~~~~~l~~~~~~~l~-i~G~~~---------~~~~~~~~~~~~~~~~v~~~g 281 (394)
T cd03794 214 EL--GLDDKFVVLYAGNIGRAQGLDTLLEAAALLKDRPDIRFL-IVGDGP---------EKEELKELAKALGLDNVTFLG 281 (394)
T ss_pred cc--CCCCcEEEEEecCcccccCHHHHHHHHHHHhhcCCeEEE-EeCCcc---------cHHHHHHHHHHcCCCcEEEeC
Confidence 11 2234567777788764 2233333333333333 33443 332211 1122221 2337888889
Q ss_pred ecchhh---hhccccccccccccc---------hhhHHHhhhcCCceeecCcccchhhHHHHHHhhhhcceecCcccchH
Q 046167 304 WAPQKE---VLSHVAVGGFWSHCG---------WNSTLESICEGVPMICMPFFEDQKVNARYLSHVWGVGLELEHELERG 371 (424)
Q Consensus 304 ~ip~~~---ll~~~~~~~~i~hgG---------~~t~~eal~~GvP~v~~P~~~DQ~~na~~~~~~~G~g~~~~~~~~~~ 371 (424)
++++.+ ++..+++ +|.... .+++.||+++|+|+|+.+..+. ...+... +.|..++. .+.+
T Consensus 282 ~~~~~~~~~~~~~~di--~i~~~~~~~~~~~~~p~~~~Ea~~~G~pvi~~~~~~~----~~~~~~~-~~g~~~~~-~~~~ 353 (394)
T cd03794 282 RVPKEELPELLAAADV--GLVPLKPGPAFEGVSPSKLFEYMAAGKPVLASVDGES----AELVEEA-GAGLVVPP-GDPE 353 (394)
T ss_pred CCChHHHHHHHHhhCe--eEEeccCcccccccCchHHHHHHHCCCcEEEecCCCc----hhhhccC-CcceEeCC-CCHH
Confidence 998665 7777777 664322 3457999999999999876543 3344453 67777766 5899
Q ss_pred HHHHHHHHHhccc
Q 046167 372 AVEKAVRKLTVDK 384 (424)
Q Consensus 372 ~L~~ai~~ll~~~ 384 (424)
++.++|.++++|+
T Consensus 354 ~l~~~i~~~~~~~ 366 (394)
T cd03794 354 ALAAAILELLDDP 366 (394)
T ss_pred HHHHHHHHHHhCh
Confidence 9999999999884
No 52
>cd03801 GT1_YqgM_like This family is most closely related to the GT1 family of glycosyltransferases and named after YqgM in Bacillus licheniformis about which little is known. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold.
Probab=99.40 E-value=7.6e-10 Score=105.32 Aligned_cols=337 Identities=14% Similarity=0.074 Sum_probs=176.5
Q ss_pred ccChHHHHHHHHHHHhCCCeEEEEeCCCCCCCCCCC-CCceEEeCCCCCCCCccccccHHHHHHHHHHhchhHHHHHHHH
Q 046167 19 QGHINPMLQLGTILHSKGFSITVVHTQFNSPNPSNH-PEFEFQSIPDGLMDVNISARNLVDSILLLNENCREPFRNWLVQ 97 (424)
Q Consensus 19 ~GH~~p~~~la~~L~~~Gh~V~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (424)
.|+...+..+++.|.+.||+|++++........... ........ . .... .............+...++.
T Consensus 14 ~G~~~~~~~l~~~L~~~g~~v~i~~~~~~~~~~~~~~~~~~~~~~-------~--~~~~-~~~~~~~~~~~~~~~~~~~~ 83 (374)
T cd03801 14 GGAERHVLELARALAARGHEVTVLTPGDGGLPDEEEVGGIVVVRP-------P--PLLR-VRRLLLLLLLALRLRRLLRR 83 (374)
T ss_pred CcHhHHHHHHHHHHHhcCceEEEEecCCCCCCceeeecCcceecC-------C--cccc-cchhHHHHHHHHHHHHHhhh
Confidence 788999999999999999999999986333321110 00000000 0 0000 00000000111112222333
Q ss_pred HHhhcCCCCCceEEEecCccchHH--HHHHHhCCceEEEecchHHHHHHHHhhhcccccCCCCCChhHHHHHHH--hhhc
Q 046167 98 MIKEQQPGDEIVCIIYDEVMYFAE--ASASQLNVQSIILRTSGAVTVVARLVLFQLKEEGYNPLKESYVQLINN--AYSA 173 (424)
Q Consensus 98 ~~~~~~~~~~pDlvi~d~~~~~~~--~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~--~~~~ 173 (424)
. +||+|+......... ..+...++|++...+.......... .......... ....
T Consensus 84 ~--------~~Dii~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~-------------~~~~~~~~~~~~~~~~ 142 (374)
T cd03801 84 E--------RFDVVHAHDWLALLAAALAARLLGIPLVLTVHGLEFGRPGNE-------------LGLLLKLARALERRAL 142 (374)
T ss_pred c--------CCcEEEEechhHHHHHHHHHHhcCCcEEEEeccchhhccccc-------------hhHHHHHHHHHHHHHH
Confidence 3 899999987664433 4788889999988776543211000 0000111111 2224
Q ss_pred cCCceEEecChhhhhHHHHHHHHhccCC---CeeeecccccCCCCCCCCCcccccccccccccCCCCeEEEEEeCCcccC
Q 046167 174 RTSSAVISNTIYCLEESVLSQLQQYFKV---PNFPIGPLHKFAPSSNGSLLKEDTSCISWLNNQSPKSVIYVSLGSVASM 250 (424)
Q Consensus 174 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~---~~~~vGp~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~I~vs~Gs~~~~ 250 (424)
...+.++..+....+ .+...++. ++..+++-...... .+.......-.. ...+...++.+|+...
T Consensus 143 ~~~d~~i~~s~~~~~-----~~~~~~~~~~~~~~~i~~~~~~~~~-----~~~~~~~~~~~~-~~~~~~~i~~~g~~~~- 210 (374)
T cd03801 143 RRADRIIAVSEATRE-----ELRELGGVPPEKITVIPNGVDTERF-----RPAPRAARRRLG-IPEDEPVILFVGRLVP- 210 (374)
T ss_pred HhCCEEEEecHHHHH-----HHHhcCCCCCCcEEEecCccccccc-----CccchHHHhhcC-CcCCCeEEEEecchhh-
Confidence 556777766643222 22222222 45555433322110 000000000111 1233456677787663
Q ss_pred CHHHHHHHHHHHHhCC---CCeEEEEcCCCCCCCcccccCchhHHH-----HhcCCCceeeecchhh---hhcccccccc
Q 046167 251 DKKELEEMAWGLVNSK---QPFLWVIRPRTNNAPEGIELLPKVLAE-----DVQENGYIVKWAPQKE---VLSHVAVGGF 319 (424)
Q Consensus 251 ~~~~~~~~~~a~~~~~---~~~i~~~~~~~~~~~~~~~~l~~~~~~-----~~~~nv~v~~~ip~~~---ll~~~~~~~~ 319 (424)
.+.+..+++++..+. .++.+.+-+.. .....+.+ ...+++.+.+++++.+ ++..+++ +
T Consensus 211 -~k~~~~~i~~~~~~~~~~~~~~l~i~G~~--------~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~~di--~ 279 (374)
T cd03801 211 -RKGVDLLLEALAKLRKEYPDVRLVIVGDG--------PLREELEALAAELGLGDRVTFLGFVPDEDLPALYAAADV--F 279 (374)
T ss_pred -hcCHHHHHHHHHHHhhhcCCeEEEEEeCc--------HHHHHHHHHHHHhCCCcceEEEeccChhhHHHHHHhcCE--E
Confidence 333344444444322 23333332221 11122221 2447888999997554 7877777 6
Q ss_pred cc----ccchhhHHHhhhcCCceeecCcccchhhHHHHHHhhhhcceecCcccchHHHHHHHHHHhcccchHHHHHHHHH
Q 046167 320 WS----HCGWNSTLESICEGVPMICMPFFEDQKVNARYLSHVWGVGLELEHELERGAVEKAVRKLTVDKEGEFLRQRAAQ 395 (424)
Q Consensus 320 i~----hgG~~t~~eal~~GvP~v~~P~~~DQ~~na~~~~~~~G~g~~~~~~~~~~~L~~ai~~ll~~~~~~~~~~~a~~ 395 (424)
|+ -|..+++.||+++|+|+|+.+. ......+++. +.|...+. .+++++.++|.++++|+ +..++..+.
T Consensus 280 i~~~~~~~~~~~~~Ea~~~g~pvI~~~~----~~~~~~~~~~-~~g~~~~~-~~~~~l~~~i~~~~~~~--~~~~~~~~~ 351 (374)
T cd03801 280 VLPSLYEGFGLVLLEAMAAGLPVVASDV----GGIPEVVEDG-ETGLLVPP-GDPEALAEAILRLLDDP--ELRRRLGEA 351 (374)
T ss_pred EecchhccccchHHHHHHcCCcEEEeCC----CChhHHhcCC-cceEEeCC-CCHHHHHHHHHHHHcCh--HHHHHHHHH
Confidence 63 2456789999999999999754 5567777764 88888777 57999999999999984 223333333
Q ss_pred HHHHHHHHhhcCCCcHHHHHHHHHHH
Q 046167 396 LKEEVELSTRKGGFSYNSLNELLDLI 421 (424)
Q Consensus 396 l~~~~~~~~~~~g~~~~a~~~~~~~~ 421 (424)
..+.+.+. -+....++++.+.+
T Consensus 352 ~~~~~~~~----~~~~~~~~~~~~~~ 373 (374)
T cd03801 352 ARERVAER----FSWDRVAARTEEVY 373 (374)
T ss_pred HHHHHHHh----cCHHHHHHHHHHhh
Confidence 33344443 55666667766654
No 53
>cd03816 GT1_ALG1_like This family is most closely related to the GT1 family of glycosyltransferases. The yeast gene ALG1 has been shown to function as a mannosyltransferase that catalyzes the formation of dolichol pyrophosphate (Dol-PP)-GlcNAc2Man from GDP-Man and Dol-PP-Glc-NAc2, and participates in the formation of the lipid-linked precursor oligosaccharide for N-glycosylation. In humans ALG1 has been associated with the congenital disorders of glycosylation (CDG) designated as subtype CDG-Ik.
Probab=99.40 E-value=1.8e-10 Score=112.62 Aligned_cols=344 Identities=15% Similarity=0.118 Sum_probs=174.5
Q ss_pred CceEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCCCCCCC-C-CCCCCceEEeCCCCCCCCccccccHHHHHHHHHH
Q 046167 8 RRRVVLVPSPHQGHINPMLQLGTILHSKGFSITVVHTQFNSPN-P-SNHPEFEFQSIPDGLMDVNISARNLVDSILLLNE 85 (424)
Q Consensus 8 ~~ril~~~~~~~GH~~p~~~la~~L~~~Gh~V~~~~~~~~~~~-~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (424)
++|+.+++....|+-.++..+|++|+++||+|++++....... . ....|+.++.++..- .. .......+.....
T Consensus 3 ~~~~~~~~~~~~~~~~R~~~~a~~L~~~G~~V~ii~~~~~~~~~~~~~~~~v~~~~~~~~~-~~---~~~~~~~~~~~~~ 78 (415)
T cd03816 3 RKRVCVLVLGDIGRSPRMQYHALSLAKHGWKVDLVGYLETPPHDEILSNPNITIHPLPPPP-QR---LNKLPFLLFAPLK 78 (415)
T ss_pred ccEEEEEEecccCCCHHHHHHHHHHHhcCceEEEEEecCCCCCHHHhcCCCEEEEECCCCc-cc---cccchHHHHHHHH
Confidence 4688888888888889999999999999999999997532211 1 234678888876321 00 0111111111111
Q ss_pred hchhHHHHHHHHHHhhcCCCCCceEEEecCcc-----chHHHHHHHhCCceEEEecchHHHHHHHHhhhcccccCCCCCC
Q 046167 86 NCREPFRNWLVQMIKEQQPGDEIVCIIYDEVM-----YFAEASASQLNVQSIILRTSGAVTVVARLVLFQLKEEGYNPLK 160 (424)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~pDlvi~d~~~-----~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 160 (424)
... .+..++..+.... +||+|++.... ..+..+++..++|+|...+..+...... . +....
T Consensus 79 ~~~-~~~~~~~~l~~~~----~~Dvi~~~~~~~~~~~~~a~~~~~~~~~~~V~~~h~~~~~~~~~---~------~~~~~ 144 (415)
T cd03816 79 VLW-QFFSLLWLLYKLR----PADYILIQNPPSIPTLLIAWLYCLLRRTKLIIDWHNYGYTILAL---K------LGENH 144 (415)
T ss_pred HHH-HHHHHHHHHHhcC----CCCEEEEeCCCCchHHHHHHHHHHHhCCeEEEEcCCchHHHHhc---c------cCCCC
Confidence 111 1111222222211 79999985322 1244456778999998766543221100 0 00000
Q ss_pred h--hHHHHHHHhhhccCCceEEecChhhhhHHHHHHHHhccCCCeeeecccccCCCCCCCCCccccccccccc-------
Q 046167 161 E--SYVQLINNAYSARTSSAVISNTIYCLEESVLSQLQQYFKVPNFPIGPLHKFAPSSNGSLLKEDTSCISWL------- 231 (424)
Q Consensus 161 ~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vGp~~~~~~~~~~~~~~~~~~l~~~l------- 231 (424)
. .....+.+ ...+.++.++..+-..-+. ... .. ..+.++..+.......- ...+....-..+.
T Consensus 145 ~~~~~~~~~e~-~~~~~ad~ii~vS~~~~~~-l~~-~~-~~~~ki~vI~Ng~~~~f----~p~~~~~~~~~~~~~~~~~~ 216 (415)
T cd03816 145 PLVRLAKWYEK-LFGRLADYNLCVTKAMKED-LQQ-FN-NWKIRATVLYDRPPEQF----RPLPLEEKHELFLKLAKTFL 216 (415)
T ss_pred HHHHHHHHHHH-HHhhcCCEeeecCHHHHHH-HHh-hh-ccCCCeeecCCCCHHHc----eeCcHHHHHHHHHhcccccc
Confidence 0 01122222 1134567777776442221 111 10 11123332221100000 0000000000000
Q ss_pred ---------ccCCCCeEEEEEeCCcccCCHHHHHHHHHHHHhCC---------CCeEEEEcCCCCCCCcccccCchhHHH
Q 046167 232 ---------NNQSPKSVIYVSLGSVASMDKKELEEMAWGLVNSK---------QPFLWVIRPRTNNAPEGIELLPKVLAE 293 (424)
Q Consensus 232 ---------~~~~~~~~I~vs~Gs~~~~~~~~~~~~~~a~~~~~---------~~~i~~~~~~~~~~~~~~~~l~~~~~~ 293 (424)
...+++..++++.|.... .+-++.+++|+..+. .++.+.+-|++. ..+.+.+
T Consensus 217 ~~~~~~~~~~~~~~~~~vi~~~grl~~--~K~~~~li~A~~~l~~~~~~~~~~~~i~l~ivG~G~--------~~~~l~~ 286 (415)
T cd03816 217 TRELRIGAVQLSEERPALLVSSTSWTP--DEDFGILLDALVAYEKSAATGPKLPKLLCIITGKGP--------LKEKYLE 286 (415)
T ss_pred ccccccccceecCCCceEEEEeccccC--CCCHHHHHHHHHHHHHhhcccccCCCEEEEEEecCc--------cHHHHHH
Confidence 011234466666787663 333344444444321 123334333321 1222222
Q ss_pred H---hc-CCCcee-eecchhh---hhcccccccccc----c---cchhhHHHhhhcCCceeecCcccchhhHHHHHHhhh
Q 046167 294 D---VQ-ENGYIV-KWAPQKE---VLSHVAVGGFWS----H---CGWNSTLESICEGVPMICMPFFEDQKVNARYLSHVW 358 (424)
Q Consensus 294 ~---~~-~nv~v~-~~ip~~~---ll~~~~~~~~i~----h---gG~~t~~eal~~GvP~v~~P~~~DQ~~na~~~~~~~ 358 (424)
. .+ +|+.+. +|+|..+ +|..+++ +|. . |-..++.||+++|+|+|+... ......++++
T Consensus 287 ~~~~~~l~~~~~~~g~~~~~~~~~~l~~aDv--~v~~~~~~~~~~~p~~~~Eama~G~PVI~s~~----~~~~eiv~~~- 359 (415)
T cd03816 287 RIKELKLKKVTIRTPWLSAEDYPKLLASADL--GVSLHTSSSGLDLPMKVVDMFGCGLPVCALDF----KCIDELVKHG- 359 (415)
T ss_pred HHHHcCCCcEEEEcCcCCHHHHHHHHHhCCE--EEEccccccccCCcHHHHHHHHcCCCEEEeCC----CCHHHHhcCC-
Confidence 2 22 455555 6888655 6878887 552 1 124579999999999999643 4566777774
Q ss_pred hcceecCcccchHHHHHHHHHHhcc---cc-hHHHHHHHHHHH
Q 046167 359 GVGLELEHELERGAVEKAVRKLTVD---KE-GEFLRQRAAQLK 397 (424)
Q Consensus 359 G~g~~~~~~~~~~~L~~ai~~ll~~---~~-~~~~~~~a~~l~ 397 (424)
+.|..+. ++++|+++|.++++| ++ ...+++++++.+
T Consensus 360 ~~G~lv~---d~~~la~~i~~ll~~~~~~~~~~~m~~~~~~~~ 399 (415)
T cd03816 360 ENGLVFG---DSEELAEQLIDLLSNFPNRGKLNSLKKGAQEES 399 (415)
T ss_pred CCEEEEC---CHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhh
Confidence 8888873 899999999999998 43 445555555544
No 54
>COG3980 spsG Spore coat polysaccharide biosynthesis protein, predicted glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=99.38 E-value=1.4e-10 Score=101.51 Aligned_cols=290 Identities=17% Similarity=0.157 Sum_probs=174.4
Q ss_pred ceEEEEcCC----CccChHHHHHHHHHHHhCCCeEEEEeCCCCCCCC-CCCCCceEEeCCCCCCCCccccccHHHHHHHH
Q 046167 9 RRVVLVPSP----HQGHINPMLQLGTILHSKGFSITVVHTQFNSPNP-SNHPEFEFQSIPDGLMDVNISARNLVDSILLL 83 (424)
Q Consensus 9 ~ril~~~~~----~~GH~~p~~~la~~L~~~Gh~V~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (424)
|||+|.+-+ |.||+.+++.||++|.++|..++|++.+-..... ....++.+.-.
T Consensus 1 M~V~i~~Dgg~~iGmGHV~R~l~LA~~l~k~~~~~~fl~k~~~e~~~~~~~~~f~~~~~--------------------- 59 (318)
T COG3980 1 MKVLIRCDGGLEIGMGHVMRTLTLARELEKRGFACLFLTKQDIEAIIHKVYEGFKVLEG--------------------- 59 (318)
T ss_pred CcEEEEecCCcccCcchhhhHHHHHHHHHhcCceEEEecccchhhhhhhhhhhccceee---------------------
Confidence 578888743 6799999999999999999999999884211100 00011111100
Q ss_pred HHhchhHHHHHHHHHHhhcCCCCCceEEEecCccchH---HHHHHHhCCceEEEecchHHHHHHHHhhhcccccCCCCCC
Q 046167 84 NENCREPFRNWLVQMIKEQQPGDEIVCIIYDEVMYFA---EASASQLNVQSIILRTSGAVTVVARLVLFQLKEEGYNPLK 160 (424)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~pDlvi~d~~~~~~---~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 160 (424)
...+.+... ++|++|.|...... -.+..+.+.|.+.+.......+..... .
T Consensus 60 ------~~~n~ik~~--------k~d~lI~Dsygl~~dd~k~ik~e~~~k~l~fDd~~~~~~~d~d~---i--------- 113 (318)
T COG3980 60 ------RGNNLIKEE--------KFDLLIFDSYGLNADDFKLIKEEAGSKILIFDDENAKSFKDNDL---I--------- 113 (318)
T ss_pred ------ecccccccc--------cCCEEEEeccCCCHHHHHHHHHHhCCcEEEecCCCccchhhhHh---h---------
Confidence 000123333 89999999865333 356668899999875543322211000 0
Q ss_pred hhHHHHHHHhhhccCCceEEecChhhhhHHHHHHHHhccCCC-eeeecccccCCCCCCCCCcccccccccccccCCCCeE
Q 046167 161 ESYVQLINNAYSARTSSAVISNTIYCLEESVLSQLQQYFKVP-NFPIGPLHKFAPSSNGSLLKEDTSCISWLNNQSPKSV 239 (424)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~vGp~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~ 239 (424)
.+...+ .+..+.+ .+.+ .++.||-+..... ++....+ .-+. .+..-
T Consensus 114 ---------vN~~~~-----a~~~y~~-----------v~~k~~~~lGp~y~~lr~---eF~~~r~---~~~~--r~~r~ 160 (318)
T COG3980 114 ---------VNAILN-----ANDYYGL-----------VPNKTRYYLGPGYAPLRP---EFYALRE---ENTE--RPKRD 160 (318)
T ss_pred ---------hhhhhc-----chhhccc-----------cCcceEEEecCCceeccH---HHHHhHH---HHhh--cchhe
Confidence 000000 0000000 1122 4666664433211 1111110 0011 13446
Q ss_pred EEEEeCCcccCCHHHHHHHHHHHHhCCCCeEEEEcCCCCCCCcccccCchhHHHHhc--CCCceeeecc-hhhhhccccc
Q 046167 240 IYVSLGSVASMDKKELEEMAWGLVNSKQPFLWVIRPRTNNAPEGIELLPKVLAEDVQ--ENGYIVKWAP-QKEVLSHVAV 316 (424)
Q Consensus 240 I~vs~Gs~~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~--~nv~v~~~ip-~~~ll~~~~~ 316 (424)
|+|++|... +.....+++..+.+..+.+-++++.. +.-.++...+.. +|+.+.-... ...+++.+++
T Consensus 161 ilI~lGGsD--pk~lt~kvl~~L~~~~~nl~iV~gs~--------~p~l~~l~k~~~~~~~i~~~~~~~dma~LMke~d~ 230 (318)
T COG3980 161 ILITLGGSD--PKNLTLKVLAELEQKNVNLHIVVGSS--------NPTLKNLRKRAEKYPNINLYIDTNDMAELMKEADL 230 (318)
T ss_pred EEEEccCCC--hhhhHHHHHHHhhccCeeEEEEecCC--------CcchhHHHHHHhhCCCeeeEecchhHHHHHHhcch
Confidence 999999766 56666778888887776666666422 122333333322 5556554444 5569988887
Q ss_pred cccccccchhhHHHhhhcCCceeecCcccchhhHHHHHHhhhhcceecCcccchHHHHHHHHHHhcccchHHHHHHHHH
Q 046167 317 GGFWSHCGWNSTLESICEGVPMICMPFFEDQKVNARYLSHVWGVGLELEHELERGAVEKAVRKLTVDKEGEFLRQRAAQ 395 (424)
Q Consensus 317 ~~~i~hgG~~t~~eal~~GvP~v~~P~~~DQ~~na~~~~~~~G~g~~~~~~~~~~~L~~ai~~ll~~~~~~~~~~~a~~ 395 (424)
.|+-||. |++|++..|+|.+++|....|...|+.++. +|+-..+.-.+.......-+.++.+| ...|++.-.
T Consensus 231 --aI~AaGs-tlyEa~~lgvP~l~l~~a~NQ~~~a~~f~~-lg~~~~l~~~l~~~~~~~~~~~i~~d---~~~rk~l~~ 302 (318)
T COG3980 231 --AISAAGS-TLYEALLLGVPSLVLPLAENQIATAKEFEA-LGIIKQLGYHLKDLAKDYEILQIQKD---YARRKNLSF 302 (318)
T ss_pred --heeccch-HHHHHHHhcCCceEEeeeccHHHHHHHHHh-cCchhhccCCCchHHHHHHHHHhhhC---HHHhhhhhh
Confidence 8887765 899999999999999999999999999999 79988887557788888888999988 454544433
No 55
>TIGR02468 sucrsPsyn_pln sucrose phosphate synthase/possible sucrose phosphate phosphatase, plant. Members of this family are sucrose-phosphate synthases of plants. This enzyme is known to exist in multigene families in several species of both monocots and dicots. The N-terminal domain is the glucosyltransferase domain. Members of this family also have a variable linker region and a C-terminal domain that resembles sucrose phosphate phosphatase (SPP) (EC 3.1.3.24) (see TIGR01485), the next and final enzyme of sucrose biosynthesis. The SPP-like domain likely serves a binding and not a catalytic function, as the reported SPP is always encoded by a distinct protein.
Probab=99.36 E-value=6.7e-10 Score=115.86 Aligned_cols=391 Identities=16% Similarity=0.096 Sum_probs=202.3
Q ss_pred CceEEEEcCC---------------CccChHHHHHHHHHHHhCC--CeEEEEeCCCCCCC--------------------
Q 046167 8 RRRVVLVPSP---------------HQGHINPMLQLGTILHSKG--FSITVVHTQFNSPN-------------------- 50 (424)
Q Consensus 8 ~~ril~~~~~---------------~~GH~~p~~~la~~L~~~G--h~V~~~~~~~~~~~-------------------- 50 (424)
++.|++++.. ++|+..=.+.||++|+++| |+|.++|.......
T Consensus 169 ~~~I~liS~HG~~~~~~~elg~~~DtGGq~vYV~ELAraLa~~~gv~~Vdl~TR~~~~~~~~~~y~~p~e~~~~~~~~~~ 248 (1050)
T TIGR02468 169 KLYIVLISLHGLVRGENMELGRDSDTGGQVKYVVELARALGSMPGVYRVDLLTRQVSSPDVDWSYGEPTEMLTPRSSEND 248 (1050)
T ss_pred ceEEEEEccccCccccCcccCCCCCCCChHHHHHHHHHHHHhCCCCCEEEEEeCCcCccccccccCCccccccccccccc
Confidence 5778777633 2345555789999999999 99999998532110
Q ss_pred ---CCCCCCceEEeCCCCCCCCccccccHHHHHHHHHHhchhHHHHH----HHHHHhhcCCCCCceEEEecCcc--chHH
Q 046167 51 ---PSNHPEFEFQSIPDGLMDVNISARNLVDSILLLNENCREPFRNW----LVQMIKEQQPGDEIVCIIYDEVM--YFAE 121 (424)
Q Consensus 51 ---~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~pDlvi~d~~~--~~~~ 121 (424)
....+|+.++.+|.+..........+...+..|...+...+..+ .+.+...... .||+|.++... .++.
T Consensus 249 ~~~~~~~~g~rIvRip~GP~~~~l~Ke~L~~~l~ef~d~~l~~~~~~~~~~~~~~~~~~~~--~pDvIHaHyw~sG~aa~ 326 (1050)
T TIGR02468 249 GDEMGESSGAYIIRIPFGPRDKYIPKEELWPYIPEFVDGALSHIVNMSKVLGEQIGSGHPV--WPYVIHGHYADAGDSAA 326 (1050)
T ss_pred cccccCCCCeEEEEeccCCCCCCcCHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccccCC--CCCEEEECcchHHHHHH
Confidence 01124788888886643233344445555555555444443322 2222111111 49999999654 7777
Q ss_pred HHHHHhCCceEEEecchHHHHHHHH-hhhcccccCCCCCChhH---HHHHHH-hhhccCCceEEecChhhhhHHHHHH--
Q 046167 122 ASASQLNVQSIILRTSGAVTVVARL-VLFQLKEEGYNPLKESY---VQLINN-AYSARTSSAVISNTIYCLEESVLSQ-- 194 (424)
Q Consensus 122 ~~A~~lgiP~v~~~~~~~~~~~~~~-~~~~~~~~~~~p~~~~~---~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~-- 194 (424)
.+++.+|||+|.+.++......... ..+. ...+..+.. ..++.. -.....++.++..|-.+.+.-+-.|
T Consensus 327 ~L~~~lgVP~V~T~HSLgr~K~~~ll~~g~----~~~~~~~~~y~~~~Ri~~Ee~~l~~Ad~VIasT~qE~~eq~~lY~~ 402 (1050)
T TIGR02468 327 LLSGALNVPMVLTGHSLGRDKLEQLLKQGR----MSKEEINSTYKIMRRIEAEELSLDASEIVITSTRQEIEEQWGLYDG 402 (1050)
T ss_pred HHHHhhCCCEEEECccchhhhhhhhccccc----ccccccccccchHHHHHHHHHHHHhcCEEEEeCHHHHHHHHHHhcc
Confidence 8999999999998887432211100 0000 000111111 112221 2335677888888766555322111
Q ss_pred HHh------------c------cCCC--eeeecccccCCCCCC-C-------------C-CcccccccccccccCCCCeE
Q 046167 195 LQQ------------Y------FKVP--NFPIGPLHKFAPSSN-G-------------S-LLKEDTSCISWLNNQSPKSV 239 (424)
Q Consensus 195 ~~~------------~------~~~~--~~~vGp~~~~~~~~~-~-------------~-~~~~~~~l~~~l~~~~~~~~ 239 (424)
+.+ . +.++ +++.|--.....+.. . . ..+....+..|+.. ++ ..
T Consensus 403 ~~~~~~~~~~~~~~~gv~~~g~~~~ri~VIPpGVD~~~F~P~~~~~~~~~~~~~~~~~~~~~~~~~~l~r~~~~-pd-kp 480 (1050)
T TIGR02468 403 FDVILERKLRARARRGVSCYGRFMPRMAVIPPGMEFSHIVPHDGDMDGETEGNEEHPAKPDPPIWSEIMRFFTN-PR-KP 480 (1050)
T ss_pred CCchhhhhhhhhhcccccccccCCCCeEEeCCCCcHHHccCCCccccchhcccccccccccchhhHHHHhhccc-CC-Cc
Confidence 000 0 0113 344442111100000 0 0 00011124455542 33 34
Q ss_pred EEEEeCCcccCCHHHHHHHHHHHHhCC-----CCeEEEEcCCCCCCCc--ccccCchhHH---HH--hcCCCceeeecch
Q 046167 240 IYVSLGSVASMDKKELEEMAWGLVNSK-----QPFLWVIRPRTNNAPE--GIELLPKVLA---ED--VQENGYIVKWAPQ 307 (424)
Q Consensus 240 I~vs~Gs~~~~~~~~~~~~~~a~~~~~-----~~~i~~~~~~~~~~~~--~~~~l~~~~~---~~--~~~nv~v~~~ip~ 307 (424)
+++..|... +.+-+..+++|+..+. .++.++++.+...... .....-..+. ++ +.++|.+.+++++
T Consensus 481 vIL~VGRL~--p~KGi~~LIeAf~~L~~l~~~~nL~LIiG~gdd~d~l~~~~~~~l~~L~~li~~lgL~g~V~FlG~v~~ 558 (1050)
T TIGR02468 481 MILALARPD--PKKNITTLVKAFGECRPLRELANLTLIMGNRDDIDEMSSGSSSVLTSVLKLIDKYDLYGQVAYPKHHKQ 558 (1050)
T ss_pred EEEEEcCCc--cccCHHHHHHHHHHhHhhccCCCEEEEEecCchhhhhhccchHHHHHHHHHHHHhCCCCeEEecCCCCH
Confidence 556668777 4555566667775542 2444455432110000 0000001111 22 3367888888887
Q ss_pred hh---hhcccc--cccccccc---c-hhhHHHhhhcCCceeecCcccchhhHHHHHHhhhhcceecCcccchHHHHHHHH
Q 046167 308 KE---VLSHVA--VGGFWSHC---G-WNSTLESICEGVPMICMPFFEDQKVNARYLSHVWGVGLELEHELERGAVEKAVR 378 (424)
Q Consensus 308 ~~---ll~~~~--~~~~i~hg---G-~~t~~eal~~GvP~v~~P~~~DQ~~na~~~~~~~G~g~~~~~~~~~~~L~~ai~ 378 (424)
.+ ++..++ .++||+-. | ..++.||+++|+|+|+.... .....++.. ..|+.++. .+++.|+++|.
T Consensus 559 edvp~lYr~Ad~s~DVFV~PS~~EgFGLvlLEAMAcGlPVVASdvG----G~~EII~~g-~nGlLVdP-~D~eaLA~AL~ 632 (1050)
T TIGR02468 559 SDVPDIYRLAAKTKGVFINPAFIEPFGLTLIEAAAHGLPMVATKNG----GPVDIHRVL-DNGLLVDP-HDQQAIADALL 632 (1050)
T ss_pred HHHHHHHHHhhhcCCeeeCCcccCCCCHHHHHHHHhCCCEEEeCCC----CcHHHhccC-CcEEEECC-CCHHHHHHHHH
Confidence 65 665552 12377642 3 35889999999999998543 334455553 67887777 68999999999
Q ss_pred HHhcccc-hHHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHh
Q 046167 379 KLTVDKE-GEFLRQRAAQLKEEVELSTRKGGFSYNSLNELLDLIN 422 (424)
Q Consensus 379 ~ll~~~~-~~~~~~~a~~l~~~~~~~~~~~g~~~~a~~~~~~~~~ 422 (424)
++++|++ ...+.+++.+..+ . -+-...++.+++.+.
T Consensus 633 ~LL~Dpelr~~m~~~gr~~v~----~----FSWe~ia~~yl~~i~ 669 (1050)
T TIGR02468 633 KLVADKQLWAECRQNGLKNIH----L----FSWPEHCKTYLSRIA 669 (1050)
T ss_pred HHhhCHHHHHHHHHHHHHHHH----H----CCHHHHHHHHHHHHH
Confidence 9999843 2233333333222 1 333455565655544
No 56
>PF03033 Glyco_transf_28: Glycosyltransferase family 28 N-terminal domain; InterPro: IPR004276 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC).; GO: 0016758 transferase activity, transferring hexosyl groups, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2IYF_B 2YJN_A 2P6P_A 1PNV_A 3H4T_A 3H4I_A 1PN3_B 3IA7_B 1NLM_B 1F0K_B ....
Probab=99.35 E-value=2.5e-13 Score=111.79 Aligned_cols=126 Identities=17% Similarity=0.165 Sum_probs=78.0
Q ss_pred EEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCCCCCCCCCCCCCceEEeCCCCCCCCccccccHHHHHHHHHHh--ch
Q 046167 11 VVLVPSPHQGHINPMLQLGTILHSKGFSITVVHTQFNSPNPSNHPEFEFQSIPDGLMDVNISARNLVDSILLLNEN--CR 88 (424)
Q Consensus 11 il~~~~~~~GH~~p~~~la~~L~~~Gh~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~ 88 (424)
|+|++.|+.||++|+++||++|++|||+|++++++...+.. ...|++|.+++.. ............+...... ..
T Consensus 1 Ili~~~Gt~Ghv~P~lala~~L~~rGh~V~~~~~~~~~~~v-~~~Gl~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 77 (139)
T PF03033_consen 1 ILIATGGTRGHVYPFLALARALRRRGHEVRLATPPDFRERV-EAAGLEFVPIPGD--SRLPRSLEPLANLRRLARLIRGL 77 (139)
T ss_dssp EEEEEESSHHHHHHHHHHHHHHHHTT-EEEEEETGGGHHHH-HHTT-EEEESSSC--GGGGHHHHHHHHHHCHHHHHHHH
T ss_pred CEEEEcCChhHHHHHHHHHHHHhccCCeEEEeecccceecc-cccCceEEEecCC--cCcCcccchhhhhhhHHHHhhhh
Confidence 78999999999999999999999999999999986444333 3489999999855 0000100111111111111 01
Q ss_pred hHHHHHHHHHH-----hhcCCCCCceEEEecCccchHHHHHHHhCCceEEEecchHH
Q 046167 89 EPFRNWLVQMI-----KEQQPGDEIVCIIYDEVMYFAEASASQLNVQSIILRTSGAV 140 (424)
Q Consensus 89 ~~~~~~~~~~~-----~~~~~~~~pDlvi~d~~~~~~~~~A~~lgiP~v~~~~~~~~ 140 (424)
..+.+.++... ...+.+ .+|+++++.....+..+|+++|||++.....+.+
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~vaE~~~iP~~~~~~~p~~ 133 (139)
T PF03033_consen 78 EEAMRILARFRPDLVVAAGGYV-ADDVIIAAPLAFAAALVAEQLGIPGVANRLFPWF 133 (139)
T ss_dssp HHHHHHHHHHHHCCCCHCTTTT-ECCEECHHHHHTHHHHHHHHHTS-EEEEESSGGG
T ss_pred hHHHHHhhccCcchhhhccCcc-cchHHHhhhhcCccceeEhhhCchHHHHhhCCcC
Confidence 11111222221 111111 5788888887788999999999999998777653
No 57
>cd03808 GT1_cap1E_like This family is most closely related to the GT1 family of glycosyltransferases. cap1E in Streptococcus pneumoniae is required for the synthesis of type 1 capsular polysaccharides.
Probab=99.35 E-value=1.1e-09 Score=103.92 Aligned_cols=316 Identities=14% Similarity=0.078 Sum_probs=161.6
Q ss_pred eEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCCCCCCCCCCCCCceEEeCCCCCCCCccccccHHHHHHHHHHhchh
Q 046167 10 RVVLVPSPHQGHINPMLQLGTILHSKGFSITVVHTQFNSPNPSNHPEFEFQSIPDGLMDVNISARNLVDSILLLNENCRE 89 (424)
Q Consensus 10 ril~~~~~~~GH~~p~~~la~~L~~~Gh~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (424)
||++++....|+......++++|.++||+|++++............++.+..++.... ..+....+....
T Consensus 1 kIl~i~~~~~g~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~----- 70 (359)
T cd03808 1 KILHIVTVDGGLYSFRLPLIKALRAAGYEVHVVAPPGDELEELEALGVKVIPIPLDRR-----GINPFKDLKALL----- 70 (359)
T ss_pred CeeEEEecchhHHHHHHHHHHHHHhcCCeeEEEecCCCcccccccCCceEEecccccc-----ccChHhHHHHHH-----
Confidence 5777777788888899999999999999999999864433222235677776663210 011111111111
Q ss_pred HHHHHHHHHHhhcCCCCCceEEEecCcc--chHHHHHHHhCCceEEEecchHHHHHHHHhhhcccccCCCCCChhHHHHH
Q 046167 90 PFRNWLVQMIKEQQPGDEIVCIIYDEVM--YFAEASASQLNVQSIILRTSGAVTVVARLVLFQLKEEGYNPLKESYVQLI 167 (424)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~pDlvi~d~~~--~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 167 (424)
.+...++.. +||+|++.... ..+..+++..+.|.+............. ... .......+
T Consensus 71 ~~~~~~~~~--------~~dvv~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~--------~~~---~~~~~~~~ 131 (359)
T cd03808 71 RLYRLLRKE--------RPDIVHTHTPKPGILGRLAARLAGVPKVIYTVHGLGFVFTS--------GGL---KRRLYLLL 131 (359)
T ss_pred HHHHHHHhc--------CCCEEEEccccchhHHHHHHHHcCCCCEEEEecCcchhhcc--------chh---HHHHHHHH
Confidence 122233333 89999987543 2333455546666555443322111000 000 00011112
Q ss_pred HHhhhccCCceEEecChhhhhHHHHHHHHhccC---CC-eeeecccccCCCCCCCCCcccccccccccccCCCCeEEEEE
Q 046167 168 NNAYSARTSSAVISNTIYCLEESVLSQLQQYFK---VP-NFPIGPLHKFAPSSNGSLLKEDTSCISWLNNQSPKSVIYVS 243 (424)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~---~~-~~~vGp~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~I~vs 243 (424)
.+ .....++.++..+-...+ .+..... .. +...+....... ..+.. .. ..+++.+++.
T Consensus 132 ~~-~~~~~~d~ii~~s~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~----~~---~~~~~~~i~~ 193 (359)
T cd03808 132 ER-LALRFTDKVIFQNEDDRD-----LALKLGIIKKKKTVLIPGSGVDLDR-----FSPSP----EP---IPEDDPVFLF 193 (359)
T ss_pred HH-HHHhhccEEEEcCHHHHH-----HHHHhcCCCcCceEEecCCCCChhh-----cCccc----cc---cCCCCcEEEE
Confidence 22 113345677766643222 1111111 12 332222221110 00000 00 1234577777
Q ss_pred eCCcccC-CHHHHHHHHHHHHhCCCCeEEEEcCCCCCCCcccccCchh-HHH-HhcCCCceeeecch-hhhhcccccccc
Q 046167 244 LGSVASM-DKKELEEMAWGLVNSKQPFLWVIRPRTNNAPEGIELLPKV-LAE-DVQENGYIVKWAPQ-KEVLSHVAVGGF 319 (424)
Q Consensus 244 ~Gs~~~~-~~~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~l~~~-~~~-~~~~nv~v~~~ip~-~~ll~~~~~~~~ 319 (424)
.|+.... ..+.+..++..+.+.+.++.+.+-+...... ..... ..+ ...+++.+.++..+ ..++..+++ +
T Consensus 194 ~G~~~~~k~~~~li~~~~~l~~~~~~~~l~i~G~~~~~~----~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~adi--~ 267 (359)
T cd03808 194 VARLLKDKGIDELLEAARILKAKGPNVRLLLVGDGDEEN----PAAILEIEKLGLEGRVEFLGFRDDVPELLAAADV--F 267 (359)
T ss_pred EeccccccCHHHHHHHHHHHHhcCCCeEEEEEcCCCcch----hhHHHHHHhcCCcceEEEeeccccHHHHHHhccE--E
Confidence 7887642 2333333333333323333333322221110 01000 111 12357777777543 348888887 6
Q ss_pred ccccc----hhhHHHhhhcCCceeecCcccchhhHHHHHHhhhhcceecCcccchHHHHHHHHHHhccc
Q 046167 320 WSHCG----WNSTLESICEGVPMICMPFFEDQKVNARYLSHVWGVGLELEHELERGAVEKAVRKLTVDK 384 (424)
Q Consensus 320 i~hgG----~~t~~eal~~GvP~v~~P~~~DQ~~na~~~~~~~G~g~~~~~~~~~~~L~~ai~~ll~~~ 384 (424)
|.-+. .+++.||+++|+|+|+.+. ......+++. +.|..++. -+++.+.++|.+++.|+
T Consensus 268 i~ps~~e~~~~~~~Ea~~~G~Pvi~s~~----~~~~~~i~~~-~~g~~~~~-~~~~~~~~~i~~l~~~~ 330 (359)
T cd03808 268 VLPSYREGLPRVLLEAMAMGRPVIATDV----PGCREAVIDG-VNGFLVPP-GDAEALADAIERLIEDP 330 (359)
T ss_pred EecCcccCcchHHHHHHHcCCCEEEecC----CCchhhhhcC-cceEEECC-CCHHHHHHHHHHHHhCH
Confidence 65433 6789999999999999754 3445666664 78877776 57999999999999884
No 58
>cd03800 GT1_Sucrose_synthase This family is most closely related to the GT1 family of glycosyltransferases. The sucrose-phosphate synthases in this family may be unique to plants and photosynthetic bacteria. This enzyme catalyzes the synthesis of sucrose 6-phosphate from fructose 6-phosphate and uridine 5'-diphosphate-glucose, a key regulatory step of sucrose metabolism. The activity of this enzyme is regulated by phosphorylation and moderated by the concentration of various metabolites and light.
Probab=99.35 E-value=6e-10 Score=108.31 Aligned_cols=325 Identities=15% Similarity=0.119 Sum_probs=165.0
Q ss_pred CccChHHHHHHHHHHHhCCCeEEEEeCCCCCCC---CCCCCCceEEeCCCCCCCCccccccHHHHHHHHHHhchhHHHHH
Q 046167 18 HQGHINPMLQLGTILHSKGFSITVVHTQFNSPN---PSNHPEFEFQSIPDGLMDVNISARNLVDSILLLNENCREPFRNW 94 (424)
Q Consensus 18 ~~GH~~p~~~la~~L~~~Gh~V~~~~~~~~~~~---~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (424)
.+|.-..+..|+++|+++||+|++++....... .....++.+..++..-. ....... .+..... ....+
T Consensus 20 ~GG~~~~~~~l~~~L~~~g~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~---~~~~~~~----~~~~~ 91 (398)
T cd03800 20 TGGQNVYVLELARALARLGHEVDIFTRRIDDALPPIVELAPGVRVVRVPAGPA-EYLPKEE---LWPYLDE----FADDL 91 (398)
T ss_pred CCceeehHHHHHHHHhccCceEEEEEecCCcccCCccccccceEEEecccccc-cCCChhh---cchhHHH----HHHHH
Confidence 357888999999999999999999987533221 12235677766652110 0000000 1111111 11112
Q ss_pred HHHHHhhcCCCCCceEEEecCcc--chHHHHHHHhCCceEEEecchHHHHHHHHhhhcccccCCCCCCh-hHHHHHHH-h
Q 046167 95 LVQMIKEQQPGDEIVCIIYDEVM--YFAEASASQLNVQSIILRTSGAVTVVARLVLFQLKEEGYNPLKE-SYVQLINN-A 170 (424)
Q Consensus 95 ~~~~~~~~~~~~~pDlvi~d~~~--~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~~-~~~~~~~~-~ 170 (424)
++.+.... . +||+|+++... ..+..+++.+++|++...+....... ........ ........ .
T Consensus 92 ~~~~~~~~-~--~~Div~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~----------~~~~~~~~~~~~~~~~~~~ 158 (398)
T cd03800 92 LRFLRREG-G--RPDLIHAHYWDSGLVALLLARRLGIPLVHTFHSLGAVKR----------RHLGAADTYEPARRIEAEE 158 (398)
T ss_pred HHHHHhcC-C--CccEEEEecCccchHHHHHHhhcCCceEEEeecccccCC----------cccccccccchhhhhhHHH
Confidence 22232221 1 79999997533 45567888999999876553211000 00000000 00000111 2
Q ss_pred hhccCCceEEecChhhhhHHHHHHHHhccCCCeeeecccccCCCCCCCCCcccccc-cccccccCCCCeEEEEEeCCccc
Q 046167 171 YSARTSSAVISNTIYCLEESVLSQLQQYFKVPNFPIGPLHKFAPSSNGSLLKEDTS-CISWLNNQSPKSVIYVSLGSVAS 249 (424)
Q Consensus 171 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vGp~~~~~~~~~~~~~~~~~~-l~~~l~~~~~~~~I~vs~Gs~~~ 249 (424)
.....++.++..+......- ...... -..++..+.+-.....- ........ ...+ . ..++..+++..|+...
T Consensus 159 ~~~~~ad~ii~~s~~~~~~~-~~~~~~-~~~~~~vi~ng~~~~~~---~~~~~~~~~~~~~-~-~~~~~~~i~~~gr~~~ 231 (398)
T cd03800 159 RLLRAADRVIASTPQEAEEL-YSLYGA-YPRRIRVVPPGVDLERF---TPYGRAEARRARL-L-RDPDKPRILAVGRLDP 231 (398)
T ss_pred HHHhhCCEEEEcCHHHHHHH-HHHccc-cccccEEECCCCCccce---ecccchhhHHHhh-c-cCCCCcEEEEEccccc
Confidence 22456777777765432211 111100 01124444433321100 00000000 1111 1 1223466677788764
Q ss_pred CCHHHHHHHHHHHHhC-----CCCeEEEEcCCCCCCCcccccCch---hHHHH--hcCCCceeeecchhh---hhccccc
Q 046167 250 MDKKELEEMAWGLVNS-----KQPFLWVIRPRTNNAPEGIELLPK---VLAED--VQENGYIVKWAPQKE---VLSHVAV 316 (424)
Q Consensus 250 ~~~~~~~~~~~a~~~~-----~~~~i~~~~~~~~~~~~~~~~l~~---~~~~~--~~~nv~v~~~ip~~~---ll~~~~~ 316 (424)
...+..+++++..+ +..++++-++.. ... ..... ...+. ..+|+.+.+++|+.+ ++..+++
T Consensus 232 --~k~~~~ll~a~~~l~~~~~~~~l~i~G~~~~-~~~---~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~adi 305 (398)
T cd03800 232 --RKGIDTLIRAYAELPELRERANLVIVGGPRD-DIL---AMDEEELRELARELGVIDRVDFPGRVSREDLPALYRAADV 305 (398)
T ss_pred --ccCHHHHHHHHHHHHHhCCCeEEEEEECCCC-cch---hhhhHHHHHHHHhcCCCceEEEeccCCHHHHHHHHHhCCE
Confidence 23333444555433 234444432221 100 00001 11111 236888899999865 6877777
Q ss_pred cccccc----cchhhHHHhhhcCCceeecCcccchhhHHHHHHhhhhcceecCcccchHHHHHHHHHHhccc
Q 046167 317 GGFWSH----CGWNSTLESICEGVPMICMPFFEDQKVNARYLSHVWGVGLELEHELERGAVEKAVRKLTVDK 384 (424)
Q Consensus 317 ~~~i~h----gG~~t~~eal~~GvP~v~~P~~~DQ~~na~~~~~~~G~g~~~~~~~~~~~L~~ai~~ll~~~ 384 (424)
+++. |-..++.||+++|+|+|+... ......+++. +.|..++. .+.+++.++|.++++|+
T Consensus 306 --~l~ps~~e~~~~~l~Ea~a~G~Pvi~s~~----~~~~e~i~~~-~~g~~~~~-~~~~~l~~~i~~l~~~~ 369 (398)
T cd03800 306 --FVNPALYEPFGLTALEAMACGLPVVATAV----GGPRDIVVDG-VTGLLVDP-RDPEALAAALRRLLTDP 369 (398)
T ss_pred --EEecccccccCcHHHHHHhcCCCEEECCC----CCHHHHccCC-CCeEEeCC-CCHHHHHHHHHHHHhCH
Confidence 6644 224689999999999998754 3456667774 88988876 57999999999999884
No 59
>cd03817 GT1_UGDG_like This family is most closely related to the GT1 family of glycosyltransferases. UDP-glucose-diacylglycerol glucosyltransferase (UGDG; also known as 1,2-diacylglycerol 3-glucosyltransferase) catalyzes the transfer of glucose from UDP-glucose to 1,2-diacylglycerol forming 3-D-glucosyl-1,2-diacylglycerol.
Probab=99.35 E-value=2.5e-09 Score=102.34 Aligned_cols=319 Identities=13% Similarity=0.073 Sum_probs=161.0
Q ss_pred eEEEEc----CCCccChHHHHHHHHHHHhCCCeEEEEeCCCCCCCCCC-CCCceEEeCCCCCCCCccccccHHHHHHHHH
Q 046167 10 RVVLVP----SPHQGHINPMLQLGTILHSKGFSITVVHTQFNSPNPSN-HPEFEFQSIPDGLMDVNISARNLVDSILLLN 84 (424)
Q Consensus 10 ril~~~----~~~~GH~~p~~~la~~L~~~Gh~V~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (424)
||++++ ....|+......++++|.++||+|+++++......... ..++....+. ........
T Consensus 1 kil~~~~~~~p~~~G~~~~~~~l~~~L~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~--- 67 (374)
T cd03817 1 KIGIFTDTYLPQVNGVATSIRRLAEELEKRGHEVYVVAPSYPGAPEEEEVVVVRPFRVP----------TFKYPDFR--- 67 (374)
T ss_pred CeeEeehhccCCCCCeehHHHHHHHHHHHcCCeEEEEeCCCCCCCcccccccccccccc----------cchhhhhh---
Confidence 455553 33678999999999999999999999998533222111 0111111100 00000000
Q ss_pred HhchhHHHHHHHHHHhhcCCCCCceEEEecCcc---chHHHHHHHhCCceEEEecchHHHHHHHHhhhcccccCCCCCCh
Q 046167 85 ENCREPFRNWLVQMIKEQQPGDEIVCIIYDEVM---YFAEASASQLNVQSIILRTSGAVTVVARLVLFQLKEEGYNPLKE 161 (424)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~pDlvi~d~~~---~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 161 (424)
........+...+.+. +||+|++.... ..+..++++.++|++...+..+..+........ .. .
T Consensus 68 -~~~~~~~~~~~~~~~~-----~~Div~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~----~~----~ 133 (374)
T cd03817 68 -LPLPIPRALIIILKEL-----GPDIVHTHTPFSLGLLGLRVARKLGIPVVATYHTMYEDYTHYVPLGR----LL----A 133 (374)
T ss_pred -ccccHHHHHHHHHhhc-----CCCEEEECCchhhhhHHHHHHHHcCCCEEEEecCCHHHHHHHHhccc----ch----h
Confidence 0001111111222222 89999987533 234467788999999877765543222111000 00 0
Q ss_pred hHHHHHH-H--hhhccCCceEEecChhhhhHHHHHHHHh-ccCCCeeeecccccCCCCCCCCCcccccccccccccCCCC
Q 046167 162 SYVQLIN-N--AYSARTSSAVISNTIYCLEESVLSQLQQ-YFKVPNFPIGPLHKFAPSSNGSLLKEDTSCISWLNNQSPK 237 (424)
Q Consensus 162 ~~~~~~~-~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~vGp~~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 237 (424)
..... . ......++.++..+-... . .+.. ....++..+.+-.....- ...+....... .. ..++
T Consensus 134 --~~~~~~~~~~~~~~~~d~i~~~s~~~~--~---~~~~~~~~~~~~vi~~~~~~~~~---~~~~~~~~~~~-~~-~~~~ 201 (374)
T cd03817 134 --RAVVRRKLSRRFYNRCDAVIAPSEKIA--D---LLREYGVKRPIEVIPTGIDLDRF---EPVDGDDERRK-LG-IPED 201 (374)
T ss_pred --HHHHHHHHHHHHhhhCCEEEeccHHHH--H---HHHhcCCCCceEEcCCccchhcc---CccchhHHHHh-cC-CCCC
Confidence 11111 1 222455677776654311 1 1111 111233444332221100 00000000001 11 1233
Q ss_pred eEEEEEeCCcccC-CHHHHHHHHHHHHhCCCCeEEEEcCCCCCCCcccccCchhHHH-----HhcCCCceeeecchhh--
Q 046167 238 SVIYVSLGSVASM-DKKELEEMAWGLVNSKQPFLWVIRPRTNNAPEGIELLPKVLAE-----DVQENGYIVKWAPQKE-- 309 (424)
Q Consensus 238 ~~I~vs~Gs~~~~-~~~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~-----~~~~nv~v~~~ip~~~-- 309 (424)
+.+++..|+.... ..+.+..++..+.+.+.++.+.+-+.+ ...+.+.+ ...+|+.+.+++|+.+
T Consensus 202 ~~~i~~~G~~~~~k~~~~l~~~~~~~~~~~~~~~l~i~G~~--------~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~ 273 (374)
T cd03817 202 EPVLLYVGRLAKEKNIDFLIRAFARLLKEEPDVKLVIVGDG--------PEREELEELARELGLADRVIFTGFVPREELP 273 (374)
T ss_pred CeEEEEEeeeecccCHHHHHHHHHHHHHhCCCeEEEEEeCC--------chHHHHHHHHHHcCCCCcEEEeccCChHHHH
Confidence 4566667876642 233333333444332233333332221 11122222 2347888999998765
Q ss_pred -hhccccccccccc----cchhhHHHhhhcCCceeecCcccchhhHHHHHHhhhhcceecCcccchHHHHHHHHHHhccc
Q 046167 310 -VLSHVAVGGFWSH----CGWNSTLESICEGVPMICMPFFEDQKVNARYLSHVWGVGLELEHELERGAVEKAVRKLTVDK 384 (424)
Q Consensus 310 -ll~~~~~~~~i~h----gG~~t~~eal~~GvP~v~~P~~~DQ~~na~~~~~~~G~g~~~~~~~~~~~L~~ai~~ll~~~ 384 (424)
++..+++ ++.. |...++.||+++|+|+|+... ...+..++.. +.|..++. .+. ++.+++.++++|+
T Consensus 274 ~~~~~ad~--~l~~s~~e~~~~~~~Ea~~~g~PvI~~~~----~~~~~~i~~~-~~g~~~~~-~~~-~~~~~i~~l~~~~ 344 (374)
T cd03817 274 DYYKAADL--FVFASTTETQGLVLLEAMAAGLPVVAVDA----PGLPDLVADG-ENGFLFPP-GDE-ALAEALLRLLQDP 344 (374)
T ss_pred HHHHHcCE--EEecccccCcChHHHHHHHcCCcEEEeCC----CChhhheecC-ceeEEeCC-CCH-HHHHHHHHHHhCh
Confidence 7877777 6643 335789999999999999754 4566777774 88888876 223 9999999999984
No 60
>TIGR02472 sucr_P_syn_N sucrose-phosphate synthase, putative, glycosyltransferase domain. This family consists of the N-terminal regions, or in some cases the entirety, of bacterial proteins closely related to plant sucrose-phosphate synthases (SPS). The C-terminal domain (TIGR02471), found with most members of this family, resembles both bona fide plant sucrose-phosphate phosphatases (SPP) and the SPP-like domain of plant SPS. At least two members of this family lack the SPP-like domain, which may have binding or regulatory rather than enzymatic activity by analogy to plant SPS. This enzyme produces sucrose 6-phosphate and UDP from UDP-glucose and D-fructose 6-phosphate, and may be encoded near the gene for fructokinase.
Probab=99.31 E-value=3.6e-09 Score=104.36 Aligned_cols=363 Identities=15% Similarity=0.104 Sum_probs=175.4
Q ss_pred cChHHHHHHHHHHHhCCC--eEEEEeCCCCC---------CCCCCCCCceEEeCCCCCCCCccccccHHHHHHHHHHhch
Q 046167 20 GHINPMLQLGTILHSKGF--SITVVHTQFNS---------PNPSNHPEFEFQSIPDGLMDVNISARNLVDSILLLNENCR 88 (424)
Q Consensus 20 GH~~p~~~la~~L~~~Gh--~V~~~~~~~~~---------~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (424)
|=-.-+..||++|+++|| +|+++|..... .......|+++..++.+-. ... ........+ .
T Consensus 27 G~~~~v~~La~~L~~~G~~~~V~v~t~~~~~~~~~~~~~~~~~~~~~gv~v~r~~~~~~-~~~---~~~~~~~~~-~--- 98 (439)
T TIGR02472 27 GQTKYVLELARALARRSEVEQVDLVTRLIKDAKVSPDYAQPIERIAPGARIVRLPFGPR-RYL---RKELLWPYL-D--- 98 (439)
T ss_pred CcchHHHHHHHHHHhCCCCcEEEEEeccccCcCCCCccCCCeeEeCCCcEEEEecCCCC-CCc---ChhhhhhhH-H---
Confidence 333457789999999998 99999964211 1111125777777763211 100 111111111 1
Q ss_pred hHHHHHHHHHHhhcCCCCCceEEEecCcc--chHHHHHHHhCCceEEEecchHHHHHHHHhhhcccccCCCCCChh-H--
Q 046167 89 EPFRNWLVQMIKEQQPGDEIVCIIYDEVM--YFAEASASQLNVQSIILRTSGAVTVVARLVLFQLKEEGYNPLKES-Y-- 163 (424)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~pDlvi~d~~~--~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~-- 163 (424)
.....+.+.+.+.. . +||+|.+.... ..+..+++.+++|+|.+.+........ .....+..+.... .
T Consensus 99 ~~~~~l~~~~~~~~-~--~~DvIH~h~~~~~~~~~~~~~~~~~p~V~t~H~~~~~~~~-----~~~~~~~~~~~~~~~~~ 170 (439)
T TIGR02472 99 ELADNLLQHLRQQG-H--LPDLIHAHYADAGYVGARLSRLLGVPLIFTGHSLGREKRR-----RLLAAGLKPQQIEKQYN 170 (439)
T ss_pred HHHHHHHHHHHHcC-C--CCCEEEEcchhHHHHHHHHHHHhCCCEEEecccccchhhh-----hcccCCCChhhhhhhcc
Confidence 11112233332221 1 69999998633 455567888999998877653211100 0000011000000 0
Q ss_pred -HHHHHH-hhhccCCceEEecChhhhhHHHHHHHHhccC-CCeeeecccccCCCCCCCCCccccccc----ccccccCCC
Q 046167 164 -VQLINN-AYSARTSSAVISNTIYCLEESVLSQLQQYFK-VPNFPIGPLHKFAPSSNGSLLKEDTSC----ISWLNNQSP 236 (424)
Q Consensus 164 -~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~~vGp~~~~~~~~~~~~~~~~~~l----~~~l~~~~~ 236 (424)
...+.. ......++.++..+..+.......+ ..++ .++..+..-.....-.+.........+ ..+.. .+
T Consensus 171 ~~~~~~~~~~~~~~ad~ii~~s~~~~~~~~~~~--~~~~~~ki~vIpnGvd~~~f~~~~~~~~~~~~~~~~~~~~~--~~ 246 (439)
T TIGR02472 171 ISRRIEAEEETLAHASLVITSTHQEIEEQYALY--DSYQPERMQVIPPGVDLSRFYPPQSSEETSEIDNLLAPFLK--DP 246 (439)
T ss_pred hHHHHHHHHHHHHhCCEEEECCHHHHHHHHHhc--cCCCccceEEECCCcChhhcCCCCccccchhHHHHHHhhcc--cc
Confidence 011111 1224556777776543322111110 0121 234444322211100000000000001 11211 22
Q ss_pred CeEEEEEeCCcccCCHHHHHHHHHHHHhC-----CCCeEEEEcCCCCCCCcccccCch-------hH---HHH--hcCCC
Q 046167 237 KSVIYVSLGSVASMDKKELEEMAWGLVNS-----KQPFLWVIRPRTNNAPEGIELLPK-------VL---AED--VQENG 299 (424)
Q Consensus 237 ~~~I~vs~Gs~~~~~~~~~~~~~~a~~~~-----~~~~i~~~~~~~~~~~~~~~~l~~-------~~---~~~--~~~nv 299 (424)
...++++.|... +.+-++.+++|+..+ ..+++++++.+. .. ..+.. .+ .++ +.++|
T Consensus 247 ~~~~i~~vGrl~--~~Kg~~~li~A~~~l~~~~~~~~l~li~G~g~-~~----~~l~~~~~~~~~~~~~~~~~~~l~~~V 319 (439)
T TIGR02472 247 EKPPILAISRPD--RRKNIPSLVEAYGRSPKLQEMANLVLVLGCRD-DI----RKMESQQREVLQKVLLLIDRYDLYGKV 319 (439)
T ss_pred CCcEEEEEcCCc--ccCCHHHHHHHHHhChhhhhhccEEEEeCCcc-cc----ccccHHHHHHHHHHHHHHHHcCCCceE
Confidence 234666778876 445556666776532 234444443321 11 11111 11 111 34677
Q ss_pred ceeeecchhh---hhccc--ccccccccc---c-hhhHHHhhhcCCceeecCcccchhhHHHHHHhhhhcceecCcccch
Q 046167 300 YIVKWAPQKE---VLSHV--AVGGFWSHC---G-WNSTLESICEGVPMICMPFFEDQKVNARYLSHVWGVGLELEHELER 370 (424)
Q Consensus 300 ~v~~~ip~~~---ll~~~--~~~~~i~hg---G-~~t~~eal~~GvP~v~~P~~~DQ~~na~~~~~~~G~g~~~~~~~~~ 370 (424)
.+.+++++.+ +++.+ ++++||... | ..++.||+++|+|+|+... ......+.+. ..|..++. -++
T Consensus 320 ~f~g~~~~~~~~~~~~~a~~~~Dv~v~pS~~E~fg~~~lEAma~G~PvV~s~~----gg~~eiv~~~-~~G~lv~~-~d~ 393 (439)
T TIGR02472 320 AYPKHHRPDDVPELYRLAARSRGIFVNPALTEPFGLTLLEAAACGLPIVATDD----GGPRDIIANC-RNGLLVDV-LDL 393 (439)
T ss_pred EecCCCCHHHHHHHHHHHhhcCCEEecccccCCcccHHHHHHHhCCCEEEeCC----CCcHHHhcCC-CcEEEeCC-CCH
Confidence 7778877655 46544 223377643 3 4589999999999999844 4455666663 67887776 689
Q ss_pred HHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHH
Q 046167 371 GAVEKAVRKLTVDKEGEFLRQRAAQLKEEVELSTRKGGFSYNSLNELLDLI 421 (424)
Q Consensus 371 ~~L~~ai~~ll~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~a~~~~~~~~ 421 (424)
++|+++|.++++|+ ..+ +++++..++.+.+.-+-...++.+++.|
T Consensus 394 ~~la~~i~~ll~~~---~~~---~~~~~~a~~~~~~~fsw~~~~~~~~~l~ 438 (439)
T TIGR02472 394 EAIASALEDALSDS---SQW---QLWSRNGIEGVRRHYSWDAHVEKYLRIL 438 (439)
T ss_pred HHHHHHHHHHHhCH---HHH---HHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 99999999999983 322 3333333322222245555666666554
No 61
>cd03820 GT1_amsD_like This family is most closely related to the GT1 family of glycosyltransferases. AmSD in Erwinia amylovora has been shown to be involved in the biosynthesis of amylovoran, the acidic exopolysaccharide acting as a virulence factor. This enzyme may be responsible for the formation of galactose alpha-1,6 linkages in amylovoran.
Probab=99.30 E-value=3.4e-09 Score=100.15 Aligned_cols=295 Identities=15% Similarity=0.125 Sum_probs=148.0
Q ss_pred ccChHHHHHHHHHHHhCCCeEEEEeCCCCC-CCCCCCCCceEEeCCCCCCCCccccccHHHHHHHHHHhchhHHHHHHHH
Q 046167 19 QGHINPMLQLGTILHSKGFSITVVHTQFNS-PNPSNHPEFEFQSIPDGLMDVNISARNLVDSILLLNENCREPFRNWLVQ 97 (424)
Q Consensus 19 ~GH~~p~~~la~~L~~~Gh~V~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (424)
+|...-+..++++|.++||+|++++..... .......++....++..... .....+ .....+...++.
T Consensus 13 gG~~~~~~~l~~~L~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~--~~~~~~~~~l~~ 81 (348)
T cd03820 13 GGAERVLSNLANALAEKGHEVTIISLDKGEPPFYELDPKIKVIDLGDKRDS---------KLLARF--KKLRRLRKLLKN 81 (348)
T ss_pred CChHHHHHHHHHHHHhCCCeEEEEecCCCCCCccccCCccceeeccccccc---------chhccc--cchHHHHHhhcc
Confidence 455556778999999999999999986443 11122234444444321100 000000 001112222222
Q ss_pred HHhhcCCCCCceEEEecCccchHHHHHHHhCC-ceEEEecchHHHHHHHHhhhcccccCCCCCChhHHHHHHHhhhccCC
Q 046167 98 MIKEQQPGDEIVCIIYDEVMYFAEASASQLNV-QSIILRTSGAVTVVARLVLFQLKEEGYNPLKESYVQLINNAYSARTS 176 (424)
Q Consensus 98 ~~~~~~~~~~pDlvi~d~~~~~~~~~A~~lgi-P~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~ 176 (424)
. +||+|++..........+...+. |++...+.......... ............+
T Consensus 82 ~--------~~d~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~ 136 (348)
T cd03820 82 N--------KPDVVISFLTSLLTFLASLGLKIVKLIVSEHNSPDAYKKRL-----------------RRLLLRRLLYRRA 136 (348)
T ss_pred c--------CCCEEEEcCchHHHHHHHHhhccccEEEecCCCccchhhhh-----------------HHHHHHHHHHhcC
Confidence 2 89999998755334444445555 77766554322111100 0000001224556
Q ss_pred ceEEecChhhhhHHHHHHHHhccCCCeeeecccccCCCCCCCCCcccccccccccccCCCCeEEEEEeCCccc-CCHHHH
Q 046167 177 SAVISNTIYCLEESVLSQLQQYFKVPNFPIGPLHKFAPSSNGSLLKEDTSCISWLNNQSPKSVIYVSLGSVAS-MDKKEL 255 (424)
Q Consensus 177 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vGp~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~I~vs~Gs~~~-~~~~~~ 255 (424)
+.++..+.... .......+.++..+++....... .. . ...+..+++.+|+... -..+.+
T Consensus 137 d~ii~~s~~~~-----~~~~~~~~~~~~vi~~~~~~~~~------~~-------~--~~~~~~~i~~~g~~~~~K~~~~l 196 (348)
T cd03820 137 DAVVVLTEEDR-----ALYYKKFNKNVVVIPNPLPFPPE------EP-------S--SDLKSKRILAVGRLVPQKGFDLL 196 (348)
T ss_pred CEEEEeCHHHH-----HHhhccCCCCeEEecCCcChhhc------cc-------c--CCCCCcEEEEEEeeccccCHHHH
Confidence 77776664432 11112222446666544432110 00 0 1223345566677654 122333
Q ss_pred HHHHHHHHhCCCCeEEEEcCCCCCCCcccccCchhHH---HH--hcCCCceeeecch-hhhhccccccccccccc----h
Q 046167 256 EEMAWGLVNSKQPFLWVIRPRTNNAPEGIELLPKVLA---ED--VQENGYIVKWAPQ-KEVLSHVAVGGFWSHCG----W 325 (424)
Q Consensus 256 ~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~---~~--~~~nv~v~~~ip~-~~ll~~~~~~~~i~hgG----~ 325 (424)
..++..+.+...++-+.+-+.+ ...+.+. ++ ..+++.+.++... ..++..+++ +|.-.. .
T Consensus 197 ~~~~~~l~~~~~~~~l~i~G~~--------~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~ad~--~i~ps~~e~~~ 266 (348)
T cd03820 197 IEAWAKIAKKHPDWKLRIVGDG--------PEREALEALIKELGLEDRVILLGFTKNIEEYYAKASI--FVLTSRFEGFP 266 (348)
T ss_pred HHHHHHHHhcCCCeEEEEEeCC--------CCHHHHHHHHHHcCCCCeEEEcCCcchHHHHHHhCCE--EEeCccccccC
Confidence 3333333322333333332221 1112221 11 2356666676332 348877777 665542 5
Q ss_pred hhHHHhhhcCCceeecCcccchhhHHHHHHhhhhcceecCcccchHHHHHHHHHHhccc
Q 046167 326 NSTLESICEGVPMICMPFFEDQKVNARYLSHVWGVGLELEHELERGAVEKAVRKLTVDK 384 (424)
Q Consensus 326 ~t~~eal~~GvP~v~~P~~~DQ~~na~~~~~~~G~g~~~~~~~~~~~L~~ai~~ll~~~ 384 (424)
.++.||+++|+|+|+.+..+.+. .+......|..++. .+.+++.++|.++++|+
T Consensus 267 ~~~~Ea~a~G~Pvi~~~~~~~~~----~~~~~~~~g~~~~~-~~~~~~~~~i~~ll~~~ 320 (348)
T cd03820 267 MVLLEAMAFGLPVISFDCPTGPS----EIIEDGVNGLLVPN-GDVEALAEALLRLMEDE 320 (348)
T ss_pred HHHHHHHHcCCCEEEecCCCchH----hhhccCcceEEeCC-CCHHHHHHHHHHHHcCH
Confidence 78999999999999875543332 23342137877776 67899999999999994
No 62
>cd03798 GT1_wlbH_like This family is most closely related to the GT1 family of glycosyltransferases. wlbH in Bordetella parapertussis has been shown to be required for the biosynthesis of a trisaccharide that, when attached to the B. pertussis lipopolysaccharide (LPS) core (band B), generates band A LPS.
Probab=99.28 E-value=7.5e-09 Score=98.75 Aligned_cols=345 Identities=15% Similarity=0.069 Sum_probs=174.4
Q ss_pred CccChHHHHHHHHHHHhCCCeEEEEeCCCCCCCCCCC-CCceEEeCCCCCCCCccccccHHHHHHHHHHhchhHHHHHHH
Q 046167 18 HQGHINPMLQLGTILHSKGFSITVVHTQFNSPNPSNH-PEFEFQSIPDGLMDVNISARNLVDSILLLNENCREPFRNWLV 96 (424)
Q Consensus 18 ~~GH~~p~~~la~~L~~~Gh~V~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (424)
.+|+-.-...+++.|.+.||+|++++........... ....................... .... .....+...++
T Consensus 13 ~~g~~~~~~~~~~~l~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-~~~~~~~~~l~ 88 (377)
T cd03798 13 NGGGGIFVKELARALAKRGVEVTVLAPGPWGPKLLDLLKGRLVGVERLPVLLPVVPLLKGP---LLYL-LAARALLKLLK 88 (377)
T ss_pred CchHHHHHHHHHHHHHHCCCceEEEecCCCCCCchhhcccccccccccccCcchhhccccc---hhHH-HHHHHHHHHHh
Confidence 4788888999999999999999999986333221110 00000000000000000000000 0011 11111222232
Q ss_pred HHHhhcCCCCCceEEEecCcc---chHHHHHHHhCCceEEEecchHHHHHHHHhhhcccccCCCCCChhHHHHHHHhhhc
Q 046167 97 QMIKEQQPGDEIVCIIYDEVM---YFAEASASQLNVQSIILRTSGAVTVVARLVLFQLKEEGYNPLKESYVQLINNAYSA 173 (424)
Q Consensus 97 ~~~~~~~~~~~pDlvi~d~~~---~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~ 173 (424)
. ... +||+|++.... .....+++..++|++...+.......... . ...... ....
T Consensus 89 ~-~~~-----~~dii~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~-------------~--~~~~~~-~~~~ 146 (377)
T cd03798 89 L-KRF-----RPDLIHAHFAYPDGFAAALLKRKLGIPLVVTLHGSDVNLLPRK-------------R--LLRALL-RRAL 146 (377)
T ss_pred c-ccC-----CCCEEEEeccchHHHHHHHHHHhcCCCEEEEeecchhcccCch-------------h--hHHHHH-HHHH
Confidence 1 011 89999988544 33446677788899987765432211000 0 011111 2224
Q ss_pred cCCceEEecChhhhhHHHHHHHHhc--cCCCeeeecccccCCCCCCCCCcccccccccccccCCCCeEEEEEeCCccc-C
Q 046167 174 RTSSAVISNTIYCLEESVLSQLQQY--FKVPNFPIGPLHKFAPSSNGSLLKEDTSCISWLNNQSPKSVIYVSLGSVAS-M 250 (424)
Q Consensus 174 ~~~~~~~~~~~~~l~~~~~~~~~~~--~~~~~~~vGp~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~I~vs~Gs~~~-~ 250 (424)
...+.++..+....+ .+... ...++..++.......- .+....-..... ...+..+++..|+... .
T Consensus 147 ~~~d~ii~~s~~~~~-----~~~~~~~~~~~~~~i~~~~~~~~~-----~~~~~~~~~~~~-~~~~~~~i~~~g~~~~~k 215 (377)
T cd03798 147 RRADAVIAVSEALAD-----ELKALGIDPEKVTVIPNGVDTERF-----SPADRAEARKLG-LPEDKKVILFVGRLVPRK 215 (377)
T ss_pred hcCCeEEeCCHHHHH-----HHHHhcCCCCceEEcCCCcCcccC-----CCcchHHHHhcc-CCCCceEEEEeccCcccc
Confidence 556777776643222 11221 12345555544332110 000000000011 1224466677787664 1
Q ss_pred CHHHHHHHHHHHHhCCCCeEEEEcCCCCCCCcccccCchhHHHH-----hcCCCceeeecchhh---hhcccccccccc-
Q 046167 251 DKKELEEMAWGLVNSKQPFLWVIRPRTNNAPEGIELLPKVLAED-----VQENGYIVKWAPQKE---VLSHVAVGGFWS- 321 (424)
Q Consensus 251 ~~~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~-----~~~nv~v~~~ip~~~---ll~~~~~~~~i~- 321 (424)
..+.+..++..+.+.+..+.+.+.+... ..+.+.+. ..+|+.+.+++++.+ ++..+++ +|.
T Consensus 216 ~~~~li~~~~~~~~~~~~~~l~i~g~~~--------~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~ad~--~i~~ 285 (377)
T cd03798 216 GIDYLIEALARLLKKRPDVHLVIVGDGP--------LREALEALAAELGLEDRVTFLGAVPHEEVPAYYAAADV--FVLP 285 (377)
T ss_pred CHHHHHHHHHHHHhcCCCeEEEEEcCCc--------chHHHHHHHHhcCCcceEEEeCCCCHHHHHHHHHhcCe--eecc
Confidence 2233333333333332344444433311 11122211 346888899998754 7777777 552
Q ss_pred ---ccchhhHHHhhhcCCceeecCcccchhhHHHHHHhhhhcceecCcccchHHHHHHHHHHhcccchHHHHHHHHHHHH
Q 046167 322 ---HCGWNSTLESICEGVPMICMPFFEDQKVNARYLSHVWGVGLELEHELERGAVEKAVRKLTVDKEGEFLRQRAAQLKE 398 (424)
Q Consensus 322 ---hgG~~t~~eal~~GvP~v~~P~~~DQ~~na~~~~~~~G~g~~~~~~~~~~~L~~ai~~ll~~~~~~~~~~~a~~l~~ 398 (424)
-|..+++.||+++|+|+|+.+. ......+.+ .+.|...+. .+.+++.++|.+++++. .. +...+-..
T Consensus 286 ~~~~~~~~~~~Ea~~~G~pvI~~~~----~~~~~~~~~-~~~g~~~~~-~~~~~l~~~i~~~~~~~---~~-~~~~~~~~ 355 (377)
T cd03798 286 SLREGFGLVLLEAMACGLPVVATDV----GGIPEIITD-GENGLLVPP-GDPEALAEAILRLLADP---WL-RLGRAARR 355 (377)
T ss_pred hhhccCChHHHHHHhcCCCEEEecC----CChHHHhcC-CcceeEECC-CCHHHHHHHHHHHhcCc---HH-HHhHHHHH
Confidence 2456789999999999998754 345566777 377777776 68999999999999983 42 22233233
Q ss_pred HHHHHhhcCCCcHHHHHHHHHHHhc
Q 046167 399 EVELSTRKGGFSYNSLNELLDLINK 423 (424)
Q Consensus 399 ~~~~~~~~~g~~~~a~~~~~~~~~~ 423 (424)
.+.+. -+....++++.+.+++
T Consensus 356 ~~~~~----~s~~~~~~~~~~~~~~ 376 (377)
T cd03798 356 RVAER----FSWENVAERLLELYRE 376 (377)
T ss_pred HHHHH----hhHHHHHHHHHHHHhh
Confidence 33333 4445667777777665
No 63
>cd03825 GT1_wcfI_like This family is most closely related to the GT1 family of glycosyltransferases. wcfI in Bacteroides fragilis has been shown to be involved in the capsular polysaccharide biosynthesis.
Probab=99.28 E-value=2.2e-09 Score=102.97 Aligned_cols=114 Identities=16% Similarity=0.084 Sum_probs=76.3
Q ss_pred hcCCCceeeecc-hh---hhhcccccccccccc----chhhHHHhhhcCCceeecCcccchhhHHHHHHhhhhcceecCc
Q 046167 295 VQENGYIVKWAP-QK---EVLSHVAVGGFWSHC----GWNSTLESICEGVPMICMPFFEDQKVNARYLSHVWGVGLELEH 366 (424)
Q Consensus 295 ~~~nv~v~~~ip-~~---~ll~~~~~~~~i~hg----G~~t~~eal~~GvP~v~~P~~~DQ~~na~~~~~~~G~g~~~~~ 366 (424)
..+++.+.+|++ +. .+++.+++ ++.-. ...++.||+++|+|+|+... ......+... +.|..++.
T Consensus 242 ~~~~v~~~g~~~~~~~~~~~~~~ad~--~l~ps~~e~~g~~~~Eam~~g~PvI~~~~----~~~~e~~~~~-~~g~~~~~ 314 (365)
T cd03825 242 LPFPVHYLGSLNDDESLALIYSAADV--FVVPSLQENFPNTAIEALACGTPVVAFDV----GGIPDIVDHG-VTGYLAKP 314 (365)
T ss_pred CCCceEecCCcCCHHHHHHHHHhCCE--EEeccccccccHHHHHHHhcCCCEEEecC----CCChhheeCC-CceEEeCC
Confidence 456778889998 43 36877777 76643 35789999999999998744 3334455553 57776666
Q ss_pred ccchHHHHHHHHHHhcccc-hHHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHhc
Q 046167 367 ELERGAVEKAVRKLTVDKE-GEFLRQRAAQLKEEVELSTRKGGFSYNSLNELLDLINK 423 (424)
Q Consensus 367 ~~~~~~L~~ai~~ll~~~~-~~~~~~~a~~l~~~~~~~~~~~g~~~~a~~~~~~~~~~ 423 (424)
.+.+++.+++.++++|++ ...+.+++++ ..++. -+....++++++.+++
T Consensus 315 -~~~~~~~~~l~~l~~~~~~~~~~~~~~~~---~~~~~----~s~~~~~~~~~~~y~~ 364 (365)
T cd03825 315 -GDPEDLAEGIEWLLADPDEREELGEAARE---LAENE----FDSRVQAKRYLSLYEE 364 (365)
T ss_pred -CCHHHHHHHHHHHHhCHHHHHHHHHHHHH---HHHHh----cCHHHHHHHHHHHHhh
Confidence 689999999999998842 1122223222 22222 5666778888877765
No 64
>cd03796 GT1_PIG-A_like This family is most closely related to the GT1 family of glycosyltransferases. Phosphatidylinositol glycan-class A (PIG-A), an X-linked gene in humans, is necessary for the synthesis of N-acetylglucosaminyl-phosphatidylinositol, a very early intermediate in glycosyl phosphatidylinositol (GPI)-anchor biosynthesis. The GPI-anchor is an important cellular structure that facilitates the attachment of many proteins to cell surfaces. Somatic mutations in PIG-A have been associated with Paroxysmal Nocturnal Hemoglobinuria (PNH), an acquired hematological disorder.
Probab=99.27 E-value=3.2e-09 Score=103.40 Aligned_cols=340 Identities=12% Similarity=0.097 Sum_probs=166.7
Q ss_pred eEEEEcC---C-CccChHHHHHHHHHHHhCCCeEEEEeCCCCCCC--CCCCCCceEEeCCCCCCCCccccccHHHHHHHH
Q 046167 10 RVVLVPS---P-HQGHINPMLQLGTILHSKGFSITVVHTQFNSPN--PSNHPEFEFQSIPDGLMDVNISARNLVDSILLL 83 (424)
Q Consensus 10 ril~~~~---~-~~GH~~p~~~la~~L~~~Gh~V~~~~~~~~~~~--~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (424)
||++++. | .+|--.-...++++|.++||+|+++++...... .....++....+|....... ......+.
T Consensus 1 kI~~v~~~~~p~~GG~e~~~~~la~~L~~~G~~V~v~~~~~~~~~~~~~~~~~i~v~~~p~~~~~~~---~~~~~~~~-- 75 (398)
T cd03796 1 RICMVSDFFYPNLGGVETHIYQLSQCLIKRGHKVVVITHAYGNRVGIRYLTNGLKVYYLPFVVFYNQ---STLPTFFG-- 75 (398)
T ss_pred CeeEEeeccccccccHHHHHHHHHHHHHHcCCeeEEEeccCCcCCCcccccCceeEEEecceeccCC---ccccchhh--
Confidence 4555543 2 345556788999999999999999997533221 11124666666652111000 00000111
Q ss_pred HHhchhHHHHHHHHHHhhcCCCCCceEEEecCcc----chHHHHHHHhCCceEEEecchHHHHHHHHhhhcccccCCCCC
Q 046167 84 NENCREPFRNWLVQMIKEQQPGDEIVCIIYDEVM----YFAEASASQLNVQSIILRTSGAVTVVARLVLFQLKEEGYNPL 159 (424)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~pDlvi~d~~~----~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~~~p~ 159 (424)
....++..+.+. +||+|.+.... ..+..+++..++|++.+.+.... . ...
T Consensus 76 ---~~~~l~~~~~~~--------~~DiIh~~~~~~~~~~~~~~~~~~~~~~~v~t~h~~~~-~------~~~-------- 129 (398)
T cd03796 76 ---TFPLLRNILIRE--------RITIVHGHQAFSALAHEALLHARTMGLKTVFTDHSLFG-F------ADA-------- 129 (398)
T ss_pred ---hHHHHHHHHHhc--------CCCEEEECCCCchHHHHHHHHhhhcCCcEEEEeccccc-c------cch--------
Confidence 111222333333 89999998533 22456788899999987554210 0 000
Q ss_pred ChhHHHHHHHhhhccCCceEEecChhhhhHHHHHHHHhccC-CCeeeecccccCCCCCCCCCcccccccccccccCCCCe
Q 046167 160 KESYVQLINNAYSARTSSAVISNTIYCLEESVLSQLQQYFK-VPNFPIGPLHKFAPSSNGSLLKEDTSCISWLNNQSPKS 238 (424)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~~vGp~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~ 238 (424)
.......+.+ ....+++.++..+-...+.... ....+ .++..+..-.... ...+.. . ...++.
T Consensus 130 ~~~~~~~~~~-~~~~~~d~ii~~s~~~~~~~~~---~~~~~~~k~~vi~ngvd~~-----~f~~~~----~---~~~~~~ 193 (398)
T cd03796 130 SSIHTNKLLR-FSLADVDHVICVSHTSKENTVL---RASLDPERVSVIPNAVDSS-----DFTPDP----S---KRDNDK 193 (398)
T ss_pred hhHHhhHHHH-HhhccCCEEEEecHhHhhHHHH---HhCCChhhEEEEcCccCHH-----HcCCCc----c---cCCCCc
Confidence 0000111111 1134566666655432221100 11121 2233332211110 000000 0 012344
Q ss_pred EEEEEeCCcccCCHHHHHHHHHHH---HhCCCCeEEEEcCCCCCCCcccccCchhHHH---H--hcCCCceeeecchhh-
Q 046167 239 VIYVSLGSVASMDKKELEEMAWGL---VNSKQPFLWVIRPRTNNAPEGIELLPKVLAE---D--VQENGYIVKWAPQKE- 309 (424)
Q Consensus 239 ~I~vs~Gs~~~~~~~~~~~~~~a~---~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~---~--~~~nv~v~~~ip~~~- 309 (424)
.+++..|+... .+-+..+++++ .+...++.+.+.+++. ..+.+.+ + ..+++.+.+|+|+.+
T Consensus 194 ~~i~~~grl~~--~Kg~~~li~a~~~l~~~~~~~~l~i~G~g~--------~~~~l~~~~~~~~l~~~v~~~G~~~~~~~ 263 (398)
T cd03796 194 ITIVVISRLVY--RKGIDLLVGIIPEICKKHPNVRFIIGGDGP--------KRILLEEMREKYNLQDRVELLGAVPHERV 263 (398)
T ss_pred eEEEEEeccch--hcCHHHHHHHHHHHHhhCCCEEEEEEeCCc--------hHHHHHHHHHHhCCCCeEEEeCCCCHHHH
Confidence 67777787764 23333334443 3222333333333211 1122222 2 236788899998654
Q ss_pred --hhccccccccccc---cch-hhHHHhhhcCCceeecCcccchhhHHHHHHhhhhcceecCcccchHHHHHHHHHHhcc
Q 046167 310 --VLSHVAVGGFWSH---CGW-NSTLESICEGVPMICMPFFEDQKVNARYLSHVWGVGLELEHELERGAVEKAVRKLTVD 383 (424)
Q Consensus 310 --ll~~~~~~~~i~h---gG~-~t~~eal~~GvP~v~~P~~~DQ~~na~~~~~~~G~g~~~~~~~~~~~L~~ai~~ll~~ 383 (424)
+++.+++ +|.- -|. .++.||+++|+|+|+.+..+ ....+.+ |.+.... .+.+++.+++.+++++
T Consensus 264 ~~~l~~ad~--~v~pS~~E~~g~~~~EAma~G~PVI~s~~gg----~~e~i~~--~~~~~~~--~~~~~l~~~l~~~l~~ 333 (398)
T cd03796 264 RDVLVQGHI--FLNTSLTEAFCIAIVEAASCGLLVVSTRVGG----IPEVLPP--DMILLAE--PDVESIVRKLEEAISI 333 (398)
T ss_pred HHHHHhCCE--EEeCChhhccCHHHHHHHHcCCCEEECCCCC----chhheeC--CceeecC--CCHHHHHHHHHHHHhC
Confidence 7877777 6542 233 48999999999999976642 3344444 4333333 3789999999999986
Q ss_pred cchHHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHh
Q 046167 384 KEGEFLRQRAAQLKEEVELSTRKGGFSYNSLNELLDLIN 422 (424)
Q Consensus 384 ~~~~~~~~~a~~l~~~~~~~~~~~g~~~~a~~~~~~~~~ 422 (424)
.. .-+...+...+.+++. -+....++++++.++
T Consensus 334 ~~--~~~~~~~~~~~~~~~~----fs~~~~~~~~~~~y~ 366 (398)
T cd03796 334 LR--TGKHDPWSFHNRVKKM----YSWEDVAKRTEKVYD 366 (398)
T ss_pred hh--hhhhHHHHHHHHHHhh----CCHHHHHHHHHHHHH
Confidence 31 1111112222333332 555666666666554
No 65
>cd03795 GT1_like_4 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP-linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=99.27 E-value=1.9e-09 Score=103.05 Aligned_cols=310 Identities=16% Similarity=0.121 Sum_probs=158.0
Q ss_pred eEEEEc---CC-CccChHHHHHHHHHHHhCCCeEEEEeCCCCCCCC-CCCCCceEEeCCCCCCCCccccccHHHHHHHHH
Q 046167 10 RVVLVP---SP-HQGHINPMLQLGTILHSKGFSITVVHTQFNSPNP-SNHPEFEFQSIPDGLMDVNISARNLVDSILLLN 84 (424)
Q Consensus 10 ril~~~---~~-~~GH~~p~~~la~~L~~~Gh~V~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (424)
|||.++ .| .+|.-.-...++++|.++||+|++++........ ....+..+..++...... ... ...
T Consensus 1 kil~i~~~~~p~~gG~~~~~~~l~~~L~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~---~~~--- 71 (357)
T cd03795 1 RVLHVGKFYPPDRGGIEQVIRDLAEGLAARGIEVAVLCASPEPKGRDEERNGHRVIRAPSLLNVA---STP---FSP--- 71 (357)
T ss_pred CeeEecCCCCCCCCcHHHHHHHHHHHHHhCCCceEEEecCCCCcchhhhccCceEEEeecccccc---ccc---ccH---
Confidence 455554 22 5577778889999999999999999986333221 111333444433111000 000 000
Q ss_pred HhchhHHHHHHHHHHhhcCCCCCceEEEecCccchHHH--HHHHhCCceEEEecchHHHHHHHHhhhcccccCCCCCChh
Q 046167 85 ENCREPFRNWLVQMIKEQQPGDEIVCIIYDEVMYFAEA--SASQLNVQSIILRTSGAVTVVARLVLFQLKEEGYNPLKES 162 (424)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~pDlvi~d~~~~~~~~--~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 162 (424)
.+...+. +... +||+|+++........ .....++|++...+........ . ..
T Consensus 72 -----~~~~~~~-~~~~-----~~Dii~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~-----------~----~~ 125 (357)
T cd03795 72 -----SFFKQLK-KLAK-----KADVIHLHFPNPLADLALLLLPRKKPVVVHWHSDIVKQKL-----------L----LK 125 (357)
T ss_pred -----HHHHHHH-hcCC-----CCCEEEEecCcchHHHHHHHhccCceEEEEEcChhhccch-----------h----hh
Confidence 0000011 1111 8999988764432222 2222488998876643211100 0 00
Q ss_pred HHHHHHHhhhccCCceEEecChhhhhHHHHHHHHhccCCCeeeecccccCCCCCCCCCccccccc--ccccccCCCCeEE
Q 046167 163 YVQLINNAYSARTSSAVISNTIYCLEESVLSQLQQYFKVPNFPIGPLHKFAPSSNGSLLKEDTSC--ISWLNNQSPKSVI 240 (424)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vGp~~~~~~~~~~~~~~~~~~l--~~~l~~~~~~~~I 240 (424)
....+. ......++.++..+-..... +.... ..+.++..+..-..... ++..... .... ...+..+
T Consensus 126 ~~~~~~-~~~~~~~d~vi~~s~~~~~~--~~~~~-~~~~~~~~i~~gi~~~~------~~~~~~~~~~~~~--~~~~~~~ 193 (357)
T cd03795 126 LYRPLQ-RRFLRRADAIVATSPNYAET--SPVLR-RFRDKVRVIPLGLDPAR------YPRPDALEEAIWR--RAAGRPF 193 (357)
T ss_pred hhhHHH-HHHHHhcCEEEeCcHHHHHH--HHHhc-CCccceEEecCCCChhh------cCCcchhhhHhhc--CCCCCcE
Confidence 011111 11234566676655432221 11111 11133444433322210 1110000 0011 1223456
Q ss_pred EEEeCCcccCCHHHHHHHHHHHHhCC-CCeEEEEcCCCCCCCcccccCchhHHH-----HhcCCCceeeecchhh---hh
Q 046167 241 YVSLGSVASMDKKELEEMAWGLVNSK-QPFLWVIRPRTNNAPEGIELLPKVLAE-----DVQENGYIVKWAPQKE---VL 311 (424)
Q Consensus 241 ~vs~Gs~~~~~~~~~~~~~~a~~~~~-~~~i~~~~~~~~~~~~~~~~l~~~~~~-----~~~~nv~v~~~ip~~~---ll 311 (424)
++..|+.. +.+-+..+++++.++. ..++++- .+ ...+.+.+ ...+||.+.+|+|+.+ ++
T Consensus 194 i~~~G~~~--~~K~~~~li~a~~~l~~~~l~i~G--~g--------~~~~~~~~~~~~~~~~~~V~~~g~v~~~~~~~~~ 261 (357)
T cd03795 194 FLFVGRLV--YYKGLDVLLEAAAALPDAPLVIVG--EG--------PLEAELEALAAALGLLDRVRFLGRLDDEEKAALL 261 (357)
T ss_pred EEEecccc--cccCHHHHHHHHHhccCcEEEEEe--CC--------hhHHHHHHHHHhcCCcceEEEcCCCCHHHHHHHH
Confidence 67778776 3445566777777766 4443332 21 11222221 2347899999999754 77
Q ss_pred cccccccccc---ccc-hhhHHHhhhcCCceeecCcccchhhHHHHHH-hhhhcceecCcccchHHHHHHHHHHhccc
Q 046167 312 SHVAVGGFWS---HCG-WNSTLESICEGVPMICMPFFEDQKVNARYLS-HVWGVGLELEHELERGAVEKAVRKLTVDK 384 (424)
Q Consensus 312 ~~~~~~~~i~---hgG-~~t~~eal~~GvP~v~~P~~~DQ~~na~~~~-~~~G~g~~~~~~~~~~~L~~ai~~ll~~~ 384 (424)
..+++-++.+ +.| ..++.||+++|+|+|+....+.. ..+. .+ +.|...+. .+.+++.++|.++++|+
T Consensus 262 ~~ad~~i~ps~~~~e~~g~~~~Ea~~~g~Pvi~~~~~~~~----~~i~~~~-~~g~~~~~-~d~~~~~~~i~~l~~~~ 333 (357)
T cd03795 262 AACDVFVFPSVERSEAFGIVLLEAMAFGKPVISTEIGTGG----SYVNLHG-VTGLVVPP-GDPAALAEAIRRLLEDP 333 (357)
T ss_pred HhCCEEEeCCcccccccchHHHHHHHcCCCEEecCCCCch----hHHhhCC-CceEEeCC-CCHHHHHHHHHHHHHCH
Confidence 7788733333 233 45789999999999997554443 3333 34 77777766 68999999999999984
No 66
>cd03819 GT1_WavL_like This family is most closely related to the GT1 family of glycosyltransferases. WavL in Vibrio cholerae has been shown to be involved in the biosynthesis of the lipopolysaccharide core.
Probab=99.24 E-value=6.1e-09 Score=99.55 Aligned_cols=318 Identities=10% Similarity=0.002 Sum_probs=160.2
Q ss_pred CccChHHHHHHHHHHHhCCCeEEEEeCCCCCCCCCCCCCceEEeCCCCCCCCccccccHHHHHHHHHHhchhHHHHHHHH
Q 046167 18 HQGHINPMLQLGTILHSKGFSITVVHTQFNSPNPSNHPEFEFQSIPDGLMDVNISARNLVDSILLLNENCREPFRNWLVQ 97 (424)
Q Consensus 18 ~~GH~~p~~~la~~L~~~Gh~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (424)
.+|--.-...||++|+++||+|++++............++++..++.. . .+....+... ..+...++.
T Consensus 9 ~gG~e~~~~~l~~~L~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~~~~--~-----~~~~~~~~~~-----~~l~~~~~~ 76 (355)
T cd03819 9 SGGVERGTLELARALVERGHRSLVASAGGRLVAELEAEGSRHIKLPFI--S-----KNPLRILLNV-----ARLRRLIRE 76 (355)
T ss_pred cCcHHHHHHHHHHHHHHcCCEEEEEcCCCchHHHHHhcCCeEEEcccc--c-----cchhhhHHHH-----HHHHHHHHH
Confidence 355556678999999999999999987532222112245666555411 0 1111111111 112223333
Q ss_pred HHhhcCCCCCceEEEecCcc--chHHHHHHHhCCceEEEecchHHHHHHHHhhhcccccCCCCCChhHHHHHHHhhhccC
Q 046167 98 MIKEQQPGDEIVCIIYDEVM--YFAEASASQLNVQSIILRTSGAVTVVARLVLFQLKEEGYNPLKESYVQLINNAYSART 175 (424)
Q Consensus 98 ~~~~~~~~~~pDlvi~d~~~--~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~ 175 (424)
. +||+|++.... +.+..+++.+++|++...+........ .. .....
T Consensus 77 ~--------~~dii~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~-------------------~~-----~~~~~ 124 (355)
T cd03819 77 E--------KVDIVHARSRAPAWSAYLAARRTRPPFVTTVHGFYSVNFR-------------------YN-----AIMAR 124 (355)
T ss_pred c--------CCCEEEECCCchhHHHHHHHHhcCCCEEEEeCCchhhHHH-------------------HH-----HHHHh
Confidence 3 89999997543 444566778899999877654322210 00 01234
Q ss_pred CceEEecChhhhhHHHHHHHHhccC---CCeeeecccccCCCCCCCCCccccccc---ccccccCCCCeEEEEEeCCccc
Q 046167 176 SSAVISNTIYCLEESVLSQLQQYFK---VPNFPIGPLHKFAPSSNGSLLKEDTSC---ISWLNNQSPKSVIYVSLGSVAS 249 (424)
Q Consensus 176 ~~~~~~~~~~~l~~~~~~~~~~~~~---~~~~~vGp~~~~~~~~~~~~~~~~~~l---~~~l~~~~~~~~I~vs~Gs~~~ 249 (424)
++.++..+-...+ .+...++ .++..++.-.....- .......... .+-.. .+++..+++..|+...
T Consensus 125 ~~~vi~~s~~~~~-----~~~~~~~~~~~k~~~i~ngi~~~~~--~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~Gr~~~ 196 (355)
T cd03819 125 GDRVIAVSNFIAD-----HIRENYGVDPDRIRVIPRGVDLDRF--DPGAVPPERILALAREWP-LPKGKPVILLPGRLTR 196 (355)
T ss_pred cCEEEEeCHHHHH-----HHHHhcCCChhhEEEecCCcccccc--CccccchHHHHHHHHHcC-CCCCceEEEEeecccc
Confidence 5666655432211 1122222 234444432221100 0000000000 00011 1234466677787664
Q ss_pred -CCHHHHHHHHHHHHhCCCCeEEEEcCCCCCCCcccccCchhHH---H--HhcCCCceeeecch-hhhhcccccccccc-
Q 046167 250 -MDKKELEEMAWGLVNSKQPFLWVIRPRTNNAPEGIELLPKVLA---E--DVQENGYIVKWAPQ-KEVLSHVAVGGFWS- 321 (424)
Q Consensus 250 -~~~~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~---~--~~~~nv~v~~~ip~-~~ll~~~~~~~~i~- 321 (424)
...+.+..++..+.+.+.++.+.+-+..... ......+. + ...++|.+.++.+. ..++..+++-.+-+
T Consensus 197 ~Kg~~~li~~~~~l~~~~~~~~l~ivG~~~~~----~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~l~~ad~~i~ps~ 272 (355)
T cd03819 197 WKGQEVFIEALARLKKDDPDVHLLIVGDAQGR----RFYYAELLELIKRLGLQDRVTFVGHCSDMPAAYALADIVVSAST 272 (355)
T ss_pred ccCHHHHHHHHHHHHhcCCCeEEEEEECCccc----chHHHHHHHHHHHcCCcceEEEcCCcccHHHHHHhCCEEEecCC
Confidence 2234444444445443333333333322111 11111111 1 23367888888543 34888888733323
Q ss_pred -ccc-hhhHHHhhhcCCceeecCcccchhhHHHHHHhhhhcceecCcccchHHHHHHHHHHhc-ccc-hHHHHHHHHHHH
Q 046167 322 -HCG-WNSTLESICEGVPMICMPFFEDQKVNARYLSHVWGVGLELEHELERGAVEKAVRKLTV-DKE-GEFLRQRAAQLK 397 (424)
Q Consensus 322 -hgG-~~t~~eal~~GvP~v~~P~~~DQ~~na~~~~~~~G~g~~~~~~~~~~~L~~ai~~ll~-~~~-~~~~~~~a~~l~ 397 (424)
+-| ..+++||+++|+|+|+... ......+.+. +.|..++. -+.+.+.++|..++. +++ ...+++++++..
T Consensus 273 ~~e~~~~~l~EA~a~G~PvI~~~~----~~~~e~i~~~-~~g~~~~~-~~~~~l~~~i~~~~~~~~~~~~~~~~~a~~~~ 346 (355)
T cd03819 273 EPEAFGRTAVEAQAMGRPVIASDH----GGARETVRPG-ETGLLVPP-GDAEALAQALDQILSLLPEGRAKMFAKARMCV 346 (355)
T ss_pred CCCCCchHHHHHHhcCCCEEEcCC----CCcHHHHhCC-CceEEeCC-CCHHHHHHHHHHHHhhCHHHHHHHHHHHHHHH
Confidence 123 4689999999999998743 3455666663 68888776 699999999976554 422 233444444443
No 67
>PRK05749 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed
Probab=99.21 E-value=7.1e-09 Score=101.91 Aligned_cols=80 Identities=20% Similarity=0.183 Sum_probs=58.1
Q ss_pred Cceeeecch-hhhhccccccccccc-----cchhhHHHhhhcCCceeecCcccchhhHHHHHHhhhhcceecCcccchHH
Q 046167 299 GYIVKWAPQ-KEVLSHVAVGGFWSH-----CGWNSTLESICEGVPMICMPFFEDQKVNARYLSHVWGVGLELEHELERGA 372 (424)
Q Consensus 299 v~v~~~ip~-~~ll~~~~~~~~i~h-----gG~~t~~eal~~GvP~v~~P~~~DQ~~na~~~~~~~G~g~~~~~~~~~~~ 372 (424)
+.+.+...+ ..+++.+++ ++.. +|..++.||+++|+|+|+.|..+++......+.+. |.++.. -++++
T Consensus 304 v~l~~~~~el~~~y~~aDi--~~v~~S~~e~~g~~~lEAma~G~PVI~g~~~~~~~e~~~~~~~~-g~~~~~---~d~~~ 377 (425)
T PRK05749 304 VLLGDTMGELGLLYAIADI--AFVGGSLVKRGGHNPLEPAAFGVPVISGPHTFNFKEIFERLLQA-GAAIQV---EDAED 377 (425)
T ss_pred EEEEecHHHHHHHHHhCCE--EEECCCcCCCCCCCHHHHHHhCCCEEECCCccCHHHHHHHHHHC-CCeEEE---CCHHH
Confidence 333343333 347877776 3331 34446899999999999999988888888777663 766542 37899
Q ss_pred HHHHHHHHhccc
Q 046167 373 VEKAVRKLTVDK 384 (424)
Q Consensus 373 L~~ai~~ll~~~ 384 (424)
|+++|.++++|+
T Consensus 378 La~~l~~ll~~~ 389 (425)
T PRK05749 378 LAKAVTYLLTDP 389 (425)
T ss_pred HHHHHHHHhcCH
Confidence 999999999984
No 68
>cd03805 GT1_ALG2_like This family is most closely related to the GT1 family of glycosyltransferases. ALG2, a 1,3-mannosyltransferase, in yeast catalyzes the mannosylation of Man(2)GlcNAc(2)-dolichol diphosphate and Man(1)GlcNAc(2)-dolichol diphosphate to form Man(3)GlcNAc(2)-dolichol diphosphate. A deficiency of this enzyme causes an abnormal accumulation of Man1GlcNAc2-PP-dolichol and Man2GlcNAc2-PP-dolichol, which is associated with a type of congenital disorders of glycosylation (CDG), designated CDG-Ii, in humans.
Probab=99.20 E-value=2.3e-08 Score=97.18 Aligned_cols=80 Identities=16% Similarity=0.120 Sum_probs=60.2
Q ss_pred cCCCceeeecchhh---hhcccccccccccc---c-hhhHHHhhhcCCceeecCcccchhhHHHHHHhhhhcceecCccc
Q 046167 296 QENGYIVKWAPQKE---VLSHVAVGGFWSHC---G-WNSTLESICEGVPMICMPFFEDQKVNARYLSHVWGVGLELEHEL 368 (424)
Q Consensus 296 ~~nv~v~~~ip~~~---ll~~~~~~~~i~hg---G-~~t~~eal~~GvP~v~~P~~~DQ~~na~~~~~~~G~g~~~~~~~ 368 (424)
.+||.+.+++|..+ ++..+++ ++... | ..++.||+++|+|+|+.-. ......+... +.|...+.
T Consensus 279 ~~~V~f~g~~~~~~~~~~l~~ad~--~l~~s~~E~~g~~~lEAma~G~PvI~s~~----~~~~e~i~~~-~~g~~~~~-- 349 (392)
T cd03805 279 EDQVIFLPSISDSQKELLLSSARA--LLYTPSNEHFGIVPLEAMYAGKPVIACNS----GGPLETVVDG-ETGFLCEP-- 349 (392)
T ss_pred CceEEEeCCCChHHHHHHHhhCeE--EEECCCcCCCCchHHHHHHcCCCEEEECC----CCcHHHhccC-CceEEeCC--
Confidence 47889999999764 7777777 55422 1 3577999999999999744 3344556663 77877654
Q ss_pred chHHHHHHHHHHhccc
Q 046167 369 ERGAVEKAVRKLTVDK 384 (424)
Q Consensus 369 ~~~~L~~ai~~ll~~~ 384 (424)
++++++++|.++++|+
T Consensus 350 ~~~~~a~~i~~l~~~~ 365 (392)
T cd03805 350 TPEEFAEAMLKLANDP 365 (392)
T ss_pred CHHHHHHHHHHHHhCh
Confidence 8999999999999984
No 69
>PF04007 DUF354: Protein of unknown function (DUF354); InterPro: IPR007152 Members of this family are around 350 amino acids in length. They are found in archaea and some bacteria and have no known function.
Probab=99.20 E-value=3.4e-09 Score=98.76 Aligned_cols=292 Identities=17% Similarity=0.092 Sum_probs=160.6
Q ss_pred CccChHHHHHHHHHHHhCCCeEEEEeCCCCCCC-CCCCCCceEEeCCCCCCCCccccccHHHHHHHHHHhchhHHHHHHH
Q 046167 18 HQGHINPMLQLGTILHSKGFSITVVHTQFNSPN-PSNHPEFEFQSIPDGLMDVNISARNLVDSILLLNENCREPFRNWLV 96 (424)
Q Consensus 18 ~~GH~~p~~~la~~L~~~Gh~V~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (424)
..-|+.=+..+.++|.++||+|.+.+.+..... ..+..|+++..+...- .+....+..... ....+++
T Consensus 9 ~p~hvhfFk~~I~eL~~~GheV~it~R~~~~~~~LL~~yg~~y~~iG~~g-------~~~~~Kl~~~~~----R~~~l~~ 77 (335)
T PF04007_consen 9 HPAHVHFFKNIIRELEKRGHEVLITARDKDETEELLDLYGIDYIVIGKHG-------DSLYGKLLESIE----RQYKLLK 77 (335)
T ss_pred CchHHHHHHHHHHHHHhCCCEEEEEEeccchHHHHHHHcCCCeEEEcCCC-------CCHHHHHHHHHH----HHHHHHH
Confidence 445999999999999999999999998754322 3333688888877321 122222222111 1122333
Q ss_pred HHHhhcCCCCCceEEEecCccchHHHHHHHhCCceEEEecchHHHHHHHHhhhcccccCCCCCChhHHHHHHHhhhccCC
Q 046167 97 QMIKEQQPGDEIVCIIYDEVMYFAEASASQLNVQSIILRTSGAVTVVARLVLFQLKEEGYNPLKESYVQLINNAYSARTS 176 (424)
Q Consensus 97 ~~~~~~~~~~~pDlvi~d~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~ 176 (424)
.+.+. +||++|+-. +..+..+|..+|+|+|.+.-+..........+| .+
T Consensus 78 ~~~~~-----~pDv~is~~-s~~a~~va~~lgiP~I~f~D~e~a~~~~~Lt~P-------------------------la 126 (335)
T PF04007_consen 78 LIKKF-----KPDVAISFG-SPEAARVAFGLGIPSIVFNDTEHAIAQNRLTLP-------------------------LA 126 (335)
T ss_pred HHHhh-----CCCEEEecC-cHHHHHHHHHhCCCeEEEecCchhhccceeehh-------------------------cC
Confidence 33333 899999864 678888999999999998776433322211111 12
Q ss_pred ceEEecChhhhhHHHHHHHHhccCCC--ee-eecccccCCCCCCCCCcccccccccccccCCCCeEEEEEeCCccc----
Q 046167 177 SAVISNTIYCLEESVLSQLQQYFKVP--NF-PIGPLHKFAPSSNGSLLKEDTSCISWLNNQSPKSVIYVSLGSVAS---- 249 (424)
Q Consensus 177 ~~~~~~~~~~l~~~~~~~~~~~~~~~--~~-~vGp~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~I~vs~Gs~~~---- 249 (424)
+.++.+.....+. ...++.. +. +-| +....-. ....+++.+.+.++ .++++.|++-+-+..+
T Consensus 127 ~~i~~P~~~~~~~------~~~~G~~~~i~~y~G-~~E~ayl---~~F~Pd~~vl~~lg-~~~~~yIvvR~~~~~A~y~~ 195 (335)
T PF04007_consen 127 DVIITPEAIPKEF------LKRFGAKNQIRTYNG-YKELAYL---HPFKPDPEVLKELG-LDDEPYIVVRPEAWKASYDN 195 (335)
T ss_pred CeeECCcccCHHH------HHhcCCcCCEEEECC-eeeEEee---cCCCCChhHHHHcC-CCCCCEEEEEeccccCeeec
Confidence 3333322110000 0111111 22 211 1110000 01223333444455 3356788887766443
Q ss_pred CCHHHHHHHHHHHHhCCCCeEEEEcCCCCCCCcccccCchhHHHHhcCCCcee-eecchhhhhccccccccccccchhhH
Q 046167 250 MDKKELEEMAWGLVNSKQPFLWVIRPRTNNAPEGIELLPKVLAEDVQENGYIV-KWAPQKEVLSHVAVGGFWSHCGWNST 328 (424)
Q Consensus 250 ~~~~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~nv~v~-~~ip~~~ll~~~~~~~~i~hgG~~t~ 328 (424)
.....+..+++.+++.+..+++..+.. ..++-+ +.. ++.+. .-++..+++.++++ +|+-|| +..
T Consensus 196 ~~~~i~~~ii~~L~~~~~~vV~ipr~~---------~~~~~~-~~~--~~~i~~~~vd~~~Ll~~a~l--~Ig~gg-TMa 260 (335)
T PF04007_consen 196 GKKSILPEIIEELEKYGRNVVIIPRYE---------DQRELF-EKY--GVIIPPEPVDGLDLLYYADL--VIGGGG-TMA 260 (335)
T ss_pred CccchHHHHHHHHHhhCceEEEecCCc---------chhhHH-hcc--CccccCCCCCHHHHHHhcCE--EEeCCc-HHH
Confidence 234566778889988877644444222 111111 111 13332 45555679988887 888666 788
Q ss_pred HHhhhcCCceeecCcccchhhHHHHHHhhhhcceecCcccchHHHHHHHHHHhc
Q 046167 329 LESICEGVPMICMPFFEDQKVNARYLSHVWGVGLELEHELERGAVEKAVRKLTV 382 (424)
Q Consensus 329 ~eal~~GvP~v~~P~~~DQ~~na~~~~~~~G~g~~~~~~~~~~~L~~ai~~ll~ 382 (424)
.||...|+|.|-+ +-++-...-+.+.+ .|. .... .+++++.+.+.+.+.
T Consensus 261 ~EAA~LGtPaIs~-~~g~~~~vd~~L~~-~Gl--l~~~-~~~~ei~~~v~~~~~ 309 (335)
T PF04007_consen 261 REAALLGTPAISC-FPGKLLAVDKYLIE-KGL--LYHS-TDPDEIVEYVRKNLG 309 (335)
T ss_pred HHHHHhCCCEEEe-cCCcchhHHHHHHH-CCC--eEec-CCHHHHHHHHHHhhh
Confidence 9999999999974 22233334455666 365 2222 477777776655443
No 70
>cd03822 GT1_ecORF704_like This family is most closely related to the GT1 family of glycosyltransferases. ORF704 in E. coli has been shown to be involved in the biosynthesis of O-specific mannose homopolysaccharides.
Probab=99.18 E-value=2.3e-08 Score=95.70 Aligned_cols=110 Identities=23% Similarity=0.267 Sum_probs=71.5
Q ss_pred hcCCCceee-ecchhh---hhcccccccccc--c----cchhhHHHhhhcCCceeecCcccchhhHHHHHHhhhhcceec
Q 046167 295 VQENGYIVK-WAPQKE---VLSHVAVGGFWS--H----CGWNSTLESICEGVPMICMPFFEDQKVNARYLSHVWGVGLEL 364 (424)
Q Consensus 295 ~~~nv~v~~-~ip~~~---ll~~~~~~~~i~--h----gG~~t~~eal~~GvP~v~~P~~~DQ~~na~~~~~~~G~g~~~ 364 (424)
..+|+.+.+ |+|+.+ +++.+++ +|. . |-.+++.||+++|+|+|+.+..+ ...+... +.|..+
T Consensus 245 ~~~~v~~~~~~~~~~~~~~~~~~ad~--~v~ps~~e~~~~~~~~~Ea~a~G~PvI~~~~~~-----~~~i~~~-~~g~~~ 316 (366)
T cd03822 245 LADRVIFINRYLPDEELPELFSAADV--VVLPYRSADQTQSGVLAYAIGFGKPVISTPVGH-----AEEVLDG-GTGLLV 316 (366)
T ss_pred CCCcEEEecCcCCHHHHHHHHhhcCE--EEecccccccccchHHHHHHHcCCCEEecCCCC-----hheeeeC-CCcEEE
Confidence 346777774 488653 7877777 553 2 33568999999999999986643 3445553 778777
Q ss_pred CcccchHHHHHHHHHHhcccc-hHHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHH
Q 046167 365 EHELERGAVEKAVRKLTVDKE-GEFLRQRAAQLKEEVELSTRKGGFSYNSLNELLDLI 421 (424)
Q Consensus 365 ~~~~~~~~L~~ai~~ll~~~~-~~~~~~~a~~l~~~~~~~~~~~g~~~~a~~~~~~~~ 421 (424)
+. .+.+++.+++.++++|++ ...+++++++..++ -+....++++.+.+
T Consensus 317 ~~-~d~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~--------~s~~~~~~~~~~~~ 365 (366)
T cd03822 317 PP-GDPAALAEAIRRLLADPELAQALRARAREYARA--------MSWERVAERYLRLL 365 (366)
T ss_pred cC-CCHHHHHHHHHHHHcChHHHHHHHHHHHHHHhh--------CCHHHHHHHHHHHh
Confidence 76 579999999999999832 22233333332222 34455666665544
No 71
>cd03821 GT1_Bme6_like This family is most closely related to the GT1 family of glycosyltransferases. Bme6 in Brucella melitensis has been shown to be involved in the biosynthesis of a polysaccharide.
Probab=99.18 E-value=7.5e-08 Score=92.02 Aligned_cols=79 Identities=13% Similarity=0.138 Sum_probs=57.7
Q ss_pred cCCCceeeecchhh---hhcccccccccccc---c-hhhHHHhhhcCCceeecCcccchhhHHHHHHhhhhcceecCccc
Q 046167 296 QENGYIVKWAPQKE---VLSHVAVGGFWSHC---G-WNSTLESICEGVPMICMPFFEDQKVNARYLSHVWGVGLELEHEL 368 (424)
Q Consensus 296 ~~nv~v~~~ip~~~---ll~~~~~~~~i~hg---G-~~t~~eal~~GvP~v~~P~~~DQ~~na~~~~~~~G~g~~~~~~~ 368 (424)
.+++.+.+|+++.+ ++..+++ +|.-. | ..++.||+++|+|+|+.+. ......+.. +.|...+.
T Consensus 261 ~~~v~~~g~~~~~~~~~~~~~adv--~v~ps~~e~~~~~~~Eama~G~PvI~~~~----~~~~~~~~~--~~~~~~~~-- 330 (375)
T cd03821 261 EDRVTFTGMLYGEDKAAALADADL--FVLPSHSENFGIVVAEALACGTPVVTTDK----VPWQELIEY--GCGWVVDD-- 330 (375)
T ss_pred cceEEEcCCCChHHHHHHHhhCCE--EEeccccCCCCcHHHHHHhcCCCEEEcCC----CCHHHHhhc--CceEEeCC--
Confidence 47888889999654 6777777 55432 2 5688999999999999754 333444433 66666655
Q ss_pred chHHHHHHHHHHhccc
Q 046167 369 ERGAVEKAVRKLTVDK 384 (424)
Q Consensus 369 ~~~~L~~ai~~ll~~~ 384 (424)
+.+++.++|.++++|+
T Consensus 331 ~~~~~~~~i~~l~~~~ 346 (375)
T cd03821 331 DVDALAAALRRALELP 346 (375)
T ss_pred ChHHHHHHHHHHHhCH
Confidence 5599999999999983
No 72
>cd03802 GT1_AviGT4_like This family is most closely related to the GT1 family of glycosyltransferases. aviGT4 in Streptomyces viridochromogenes has been shown to be involved in biosynthesis of oligosaccharide antibiotic avilamycin A. Inactivation of aviGT4 resulted in a mutant that accumulated a novel avilamycin derivative lacking the terminal eurekanate residue.
Probab=99.17 E-value=1.2e-08 Score=96.74 Aligned_cols=155 Identities=12% Similarity=0.039 Sum_probs=93.8
Q ss_pred EEEEEeCCcccCCHHHHHHHHHHHHhCCCCeEEEEcCCCCCCCcccccCchhHHHH--hcCCCceeeecchhh---hhcc
Q 046167 239 VIYVSLGSVASMDKKELEEMAWGLVNSKQPFLWVIRPRTNNAPEGIELLPKVLAED--VQENGYIVKWAPQKE---VLSH 313 (424)
Q Consensus 239 ~I~vs~Gs~~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~--~~~nv~v~~~ip~~~---ll~~ 313 (424)
.+++..|... +.+-...+++++++.+.++++.-.+.. . ..+.....+. ..+++.+.+++++.+ +++.
T Consensus 172 ~~i~~~Gr~~--~~Kg~~~li~~~~~~~~~l~i~G~~~~-~-----~~~~~~~~~~~~~~~~v~~~G~~~~~~~~~~~~~ 243 (335)
T cd03802 172 DYLLFLGRIS--PEKGPHLAIRAARRAGIPLKLAGPVSD-P-----DYFYREIAPELLDGPDIEYLGEVGGAEKAELLGN 243 (335)
T ss_pred CEEEEEEeec--cccCHHHHHHHHHhcCCeEEEEeCCCC-H-----HHHHHHHHHhcccCCcEEEeCCCCHHHHHHHHHh
Confidence 3445557775 344455677788877777654432211 0 1111111122 258889999998754 6777
Q ss_pred ccccccccc--cc-hhhHHHhhhcCCceeecCcccchhhHHHHHHhhhhcceecCcccchHHHHHHHHHHhcccchHHHH
Q 046167 314 VAVGGFWSH--CG-WNSTLESICEGVPMICMPFFEDQKVNARYLSHVWGVGLELEHELERGAVEKAVRKLTVDKEGEFLR 390 (424)
Q Consensus 314 ~~~~~~i~h--gG-~~t~~eal~~GvP~v~~P~~~DQ~~na~~~~~~~G~g~~~~~~~~~~~L~~ai~~ll~~~~~~~~~ 390 (424)
+++-++-+. -| ..++.||+++|+|+|+... ......+.+. ..|...+. .+++.++|.++++. . +
T Consensus 244 ~d~~v~ps~~~E~~~~~~lEAma~G~PvI~~~~----~~~~e~i~~~-~~g~l~~~---~~~l~~~l~~l~~~---~--~ 310 (335)
T cd03802 244 ARALLFPILWEEPFGLVMIEAMACGTPVIAFRR----GAVPEVVEDG-VTGFLVDS---VEELAAAVARADRL---D--R 310 (335)
T ss_pred CcEEEeCCcccCCcchHHHHHHhcCCCEEEeCC----CCchhheeCC-CcEEEeCC---HHHHHHHHHHHhcc---H--H
Confidence 777333232 33 3579999999999998754 4445556552 46776654 89999999999765 2 2
Q ss_pred HHHHHHHHHHHHHhhcCCCcHHHHHHHHHHH
Q 046167 391 QRAAQLKEEVELSTRKGGFSYNSLNELLDLI 421 (424)
Q Consensus 391 ~~a~~l~~~~~~~~~~~g~~~~a~~~~~~~~ 421 (424)
+++++. ..+. -+....++++++.+
T Consensus 311 ~~~~~~---~~~~----~s~~~~~~~~~~~y 334 (335)
T cd03802 311 AACRRR---AERR----FSAARMVDDYLALY 334 (335)
T ss_pred HHHHHH---HHHh----CCHHHHHHHHHHHh
Confidence 333332 2233 56666777776654
No 73
>cd05844 GT1_like_7 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=99.16 E-value=2.5e-08 Score=95.84 Aligned_cols=82 Identities=17% Similarity=0.161 Sum_probs=63.9
Q ss_pred hcCCCceeeecchhh---hhccccccccccc----------cchhhHHHhhhcCCceeecCcccchhhHHHHHHhhhhcc
Q 046167 295 VQENGYIVKWAPQKE---VLSHVAVGGFWSH----------CGWNSTLESICEGVPMICMPFFEDQKVNARYLSHVWGVG 361 (424)
Q Consensus 295 ~~~nv~v~~~ip~~~---ll~~~~~~~~i~h----------gG~~t~~eal~~GvP~v~~P~~~DQ~~na~~~~~~~G~g 361 (424)
..+++.+.+++|+.+ ++..+++ +|.- |-..++.||+++|+|+|+.+.. .+...+.+. +.|
T Consensus 243 ~~~~v~~~g~~~~~~l~~~~~~ad~--~v~ps~~~~~~~~E~~~~~~~EA~a~G~PvI~s~~~----~~~e~i~~~-~~g 315 (367)
T cd05844 243 LGGRVTFLGAQPHAEVRELMRRARI--FLQPSVTAPSGDAEGLPVVLLEAQASGVPVVATRHG----GIPEAVEDG-ETG 315 (367)
T ss_pred CCCeEEECCCCCHHHHHHHHHhCCE--EEECcccCCCCCccCCchHHHHHHHcCCCEEEeCCC----CchhheecC-Cee
Confidence 357788889998754 6877777 5532 2357899999999999997663 466777774 888
Q ss_pred eecCcccchHHHHHHHHHHhccc
Q 046167 362 LELEHELERGAVEKAVRKLTVDK 384 (424)
Q Consensus 362 ~~~~~~~~~~~L~~ai~~ll~~~ 384 (424)
..++. .+.+++.++|.++++|+
T Consensus 316 ~~~~~-~d~~~l~~~i~~l~~~~ 337 (367)
T cd05844 316 LLVPE-GDVAALAAALGRLLADP 337 (367)
T ss_pred EEECC-CCHHHHHHHHHHHHcCH
Confidence 88876 68899999999999984
No 74
>cd03786 GT1_UDP-GlcNAc_2-Epimerase Bacterial members of the UDP-N-Acetylglucosamine (GlcNAc) 2-Epimerase family are known to catalyze the reversible interconversion of UDP-GlcNAc and UDP-N-acetylmannosamine (UDP-ManNAc). The enzyme serves to produce an activated form of ManNAc residues (UDP-ManNAc) for use in the biosynthesis of a variety of cell surface polysaccharides; The mammalian enzyme is bifunctional, catalyzing both the inversion of stereochemistry at C-2 and the hydrolysis of the UDP-sugar linkage to generate free ManNAc. It also catalyzes the phosphorylation of ManNAc to generate ManNAc 6-phosphate, a precursor to salic acids. In mammals, sialic acids are found at the termini of oligosaccharides in a large variety of cell surface glycoconjugates and are key mediators of cell-cell recognition events. Mutations in human members of this family have been associated with Sialuria, a rare disease caused by the disorders of sialic acid metabolism. This family belongs to the GT-B st
Probab=99.16 E-value=8.6e-10 Score=106.06 Aligned_cols=134 Identities=19% Similarity=0.197 Sum_probs=85.7
Q ss_pred CCeEEEEEeCCcccC-CHHHHHHHHHHHHhCCC-CeEEEEcCCCCCCCcccccCchhHHHHh--cCCCceeeecchh---
Q 046167 236 PKSVIYVSLGSVASM-DKKELEEMAWGLVNSKQ-PFLWVIRPRTNNAPEGIELLPKVLAEDV--QENGYIVKWAPQK--- 308 (424)
Q Consensus 236 ~~~~I~vs~Gs~~~~-~~~~~~~~~~a~~~~~~-~~i~~~~~~~~~~~~~~~~l~~~~~~~~--~~nv~v~~~ip~~--- 308 (424)
+++.++++.|..... ..+.+..++++++++.. +++++..++.. +. ..+.+...+.. .+|+.+.+..++.
T Consensus 197 ~~~~vlv~~~r~~~~~~~k~~~~l~~al~~l~~~~~~vi~~~~~~-~~---~~l~~~~~~~~~~~~~v~~~~~~~~~~~~ 272 (363)
T cd03786 197 PKKYILVTLHRVENVDDGEQLEEILEALAELAEEDVPVVFPNHPR-TR---PRIREAGLEFLGHHPNVLLISPLGYLYFL 272 (363)
T ss_pred CCCEEEEEeCCccccCChHHHHHHHHHHHHHHhcCCEEEEECCCC-hH---HHHHHHHHhhccCCCCEEEECCcCHHHHH
Confidence 456788888876642 45667778888876543 25545433211 10 11222111111 3677777766544
Q ss_pred hhhccccccccccccchhhHHHhhhcCCceeecCcccchhhHHHHHHhhhhcceecCcccchHHHHHHHHHHhcc
Q 046167 309 EVLSHVAVGGFWSHCGWNSTLESICEGVPMICMPFFEDQKVNARYLSHVWGVGLELEHELERGAVEKAVRKLTVD 383 (424)
Q Consensus 309 ~ll~~~~~~~~i~hgG~~t~~eal~~GvP~v~~P~~~DQ~~na~~~~~~~G~g~~~~~~~~~~~L~~ai~~ll~~ 383 (424)
.++..+++ +|+.+| |.+.||+++|+|+|+++.. |. +..+.+. |++..+.. +.+.|.++|.+++++
T Consensus 273 ~l~~~ad~--~v~~Sg-gi~~Ea~~~g~PvI~~~~~--~~--~~~~~~~-g~~~~~~~--~~~~i~~~i~~ll~~ 337 (363)
T cd03786 273 LLLKNADL--VLTDSG-GIQEEASFLGVPVLNLRDR--TE--RPETVES-GTNVLVGT--DPEAILAAIEKLLSD 337 (363)
T ss_pred HHHHcCcE--EEEcCc-cHHhhhhhcCCCEEeeCCC--Cc--cchhhhe-eeEEecCC--CHHHHHHHHHHHhcC
Confidence 36766777 999998 7788999999999998643 22 3344553 77765543 689999999999998
No 75
>TIGR02470 sucr_synth sucrose synthase. This model represents sucrose synthase, an enzyme that, despite its name, generally uses rather produces sucrose. Sucrose plus UDP (or ADP) becomes D-fructose plus UDP-glucose (or ADP-glucose), which is then available for cell wall (or starch) biosynthesis. The enzyme is homologous to sucrose phosphate synthase, which catalyzes the penultimate step in sucrose synthesis. Sucrose synthase is found, so far, exclusively in plants and cyanobacteria.
Probab=99.13 E-value=2.1e-07 Score=95.40 Aligned_cols=348 Identities=14% Similarity=0.093 Sum_probs=170.5
Q ss_pred ceEEEEcCCC-------------ccChHHHHHHHHH--------HHhCCC----eEEEEeCCCC-CC---------CCCC
Q 046167 9 RRVVLVPSPH-------------QGHINPMLQLGTI--------LHSKGF----SITVVHTQFN-SP---------NPSN 53 (424)
Q Consensus 9 ~ril~~~~~~-------------~GH~~p~~~la~~--------L~~~Gh----~V~~~~~~~~-~~---------~~~~ 53 (424)
+||++++..+ +|+..=.+.+|++ |+++|| +|.++|.... .. ....
T Consensus 256 ~rIa~lS~Hg~~~~~~~lG~~DtGGq~vYV~elaraL~~~~~~~La~~G~~v~~~V~I~TR~~~~~~~~~~~~~~e~~~~ 335 (784)
T TIGR02470 256 FNVVILSPHGYFGQENVLGLPDTGGQVVYILDQVRALENEMLQRIKLQGLEITPKILIVTRLIPDAEGTTCNQRLEKVYG 335 (784)
T ss_pred ceEEEEecccccCCccccCCCCCCCceeHHHHHHHHHHHHHHHHHHhcCCCccceEEEEecCCCCccccccccccccccC
Confidence 7888877554 5666556667776 578999 7789997522 11 1122
Q ss_pred CCCceEEeCCCCCCCCc-----cccccHHHHHHHHHHhchhHHHHHHHHHHhhcCCCCCceEEEecCcc--chHHHHHHH
Q 046167 54 HPEFEFQSIPDGLMDVN-----ISARNLVDSILLLNENCREPFRNWLVQMIKEQQPGDEIVCIIYDEVM--YFAEASASQ 126 (424)
Q Consensus 54 ~~g~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pDlvi~d~~~--~~~~~~A~~ 126 (424)
.+|..++.+|-+-.... .........+..+. .++.+.+....+. +||+|++...- ..+..+|++
T Consensus 336 ~~~~~I~rvp~g~~~~~~~~~~i~k~~l~p~l~~f~-------~~~~~~~~~~~~~--~pDlIHahy~d~glva~lla~~ 406 (784)
T TIGR02470 336 TEHAWILRVPFRTENGIILRNWISRFEIWPYLETFA-------EDAEKEILAELQG--KPDLIIGNYSDGNLVASLLARK 406 (784)
T ss_pred CCceEEEEecCCCCcccccccccCHHHHHHHHHHHH-------HHHHHHHHHhcCC--CCCEEEECCCchHHHHHHHHHh
Confidence 25777777775432211 12222222232222 2233333322222 79999998644 567789999
Q ss_pred hCCceEEEecchHHHHHHHHhhhcccccCCCCCChhHHH---HHHH-hhhccCCceEEecChhhhhH--HHHHHHH--h-
Q 046167 127 LNVQSIILRTSGAVTVVARLVLFQLKEEGYNPLKESYVQ---LINN-AYSARTSSAVISNTIYCLEE--SVLSQLQ--Q- 197 (424)
Q Consensus 127 lgiP~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~---~~~~-~~~~~~~~~~~~~~~~~l~~--~~~~~~~--~- 197 (424)
+|||.+.+.++..... +.. ...+.......++ .+.. ......++.++..+..+... .....+. .
T Consensus 407 lgVP~v~t~HsL~~~K--~~~-----~g~~~~~~e~~~~~~~r~~ae~~~~~~AD~IItsT~qEi~~~~~~v~qY~s~~~ 479 (784)
T TIGR02470 407 LGVTQCTIAHALEKTK--YPD-----SDIYWQEFEDKYHFSCQFTADLIAMNAADFIITSTYQEIAGTKDSVGQYESHQA 479 (784)
T ss_pred cCCCEEEECCcchhhc--ccc-----cccccccchhHHHhhhhhhHHHHHHhcCCEEEECcHHHhhhhhhhhhhhhhccc
Confidence 9999888766542211 000 0111111111111 2222 34466688888888655331 1111110 0
Q ss_pred -----c---------cCCCeeeecccccCC---CCCC-CCCc----c-------ccccccccccc-CCCCeEEEEEeCCc
Q 046167 198 -----Y---------FKVPNFPIGPLHKFA---PSSN-GSLL----K-------EDTSCISWLNN-QSPKSVIYVSLGSV 247 (424)
Q Consensus 198 -----~---------~~~~~~~vGp~~~~~---~~~~-~~~~----~-------~~~~l~~~l~~-~~~~~~I~vs~Gs~ 247 (424)
. .++++..+.|=.... |... .... + ...+..+.+.. .++...++++.|..
T Consensus 480 ft~p~Ly~vvnGid~~~~Ki~VVpPGVD~~iF~P~~~~~~r~~~~~~~ie~ll~~~~~~~~~~G~l~d~~kpiIl~VGRL 559 (784)
T TIGR02470 480 FTMPGLYRVVHGIDVFDPKFNIVSPGADESIYFPYSDKEKRLTNLHPEIEELLFSLEDNDEHYGYLKDPNKPIIFSMARL 559 (784)
T ss_pred ccccceeeeecCccCCcCCeEEECCCcChhhcCCCCchhhhhhhhhcchhhhccchhhHHHHhCCCCCCCCcEEEEEeCC
Confidence 0 011222222211110 0000 0000 0 00000111110 12233456667877
Q ss_pred ccCCHHHHHHHHHHHHhC-----CCCeEEEEcCCCC-CCCcccccCc--hh---HHHH--hcCCCceeeec-ch---hhh
Q 046167 248 ASMDKKELEEMAWGLVNS-----KQPFLWVIRPRTN-NAPEGIELLP--KV---LAED--VQENGYIVKWA-PQ---KEV 310 (424)
Q Consensus 248 ~~~~~~~~~~~~~a~~~~-----~~~~i~~~~~~~~-~~~~~~~~l~--~~---~~~~--~~~nv~v~~~i-p~---~~l 310 (424)
. +.+-+..+++++.+. ..+++ +++++.. ..+...+... .. +.++ +.++|.+.++. +. ..+
T Consensus 560 ~--~~KGid~LIeA~~~l~~l~~~~~LV-IVGGg~~~~~s~d~ee~~~i~~L~~la~~~gL~g~V~flG~~~~~~~~~el 636 (784)
T TIGR02470 560 D--RVKNLTGLVECYGRSPKLRELVNLV-VVAGKLDAKESKDREEQAEIEKMHNLIDQYQLHGQIRWIGAQLNRVRNGEL 636 (784)
T ss_pred C--ccCCHHHHHHHHHHhHhhCCCeEEE-EEeCCcccccccchhHHHHHHHHHHHHHHhCCCCeEEEccCcCCcccHHHH
Confidence 7 445566666776442 23444 4433211 0000000000 01 1112 23677777764 32 235
Q ss_pred hcc-cc-cccccccc---c-hhhHHHhhhcCCceeecCcccchhhHHHHHHhhhhcceecCcccchHHHHHHHHHHh
Q 046167 311 LSH-VA-VGGFWSHC---G-WNSTLESICEGVPMICMPFFEDQKVNARYLSHVWGVGLELEHELERGAVEKAVRKLT 381 (424)
Q Consensus 311 l~~-~~-~~~~i~hg---G-~~t~~eal~~GvP~v~~P~~~DQ~~na~~~~~~~G~g~~~~~~~~~~~L~~ai~~ll 381 (424)
+.. ++ .++||.-+ | .-++.||+++|+|+|+.-. ......++++ ..|..+++ .++++++++|.+++
T Consensus 637 yr~iAd~adVfV~PS~~EpFGLvvLEAMAcGlPVVAT~~----GG~~EiV~dg-~tGfLVdp-~D~eaLA~aL~~ll 707 (784)
T TIGR02470 637 YRYIADTKGIFVQPALYEAFGLTVLEAMTCGLPTFATRF----GGPLEIIQDG-VSGFHIDP-YHGEEAAEKIVDFF 707 (784)
T ss_pred HHHhhccCcEEEECCcccCCCHHHHHHHHcCCCEEEcCC----CCHHHHhcCC-CcEEEeCC-CCHHHHHHHHHHHH
Confidence 542 22 12366432 2 4588999999999999744 4566677775 78988887 68899999998876
No 76
>cd04951 GT1_WbdM_like This family is most closely related to the GT1 family of glycosyltransferases and is named after WbdM in Escherichia coli. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have
Probab=99.11 E-value=2.8e-08 Score=95.03 Aligned_cols=111 Identities=9% Similarity=0.037 Sum_probs=71.5
Q ss_pred cCCCceeeecch-hhhhccccccccccccc----hhhHHHhhhcCCceeecCcccchhhHHHHHHhhhhcceecCcccch
Q 046167 296 QENGYIVKWAPQ-KEVLSHVAVGGFWSHCG----WNSTLESICEGVPMICMPFFEDQKVNARYLSHVWGVGLELEHELER 370 (424)
Q Consensus 296 ~~nv~v~~~ip~-~~ll~~~~~~~~i~hgG----~~t~~eal~~GvP~v~~P~~~DQ~~na~~~~~~~G~g~~~~~~~~~ 370 (424)
.+|+.+.++..+ ..++..+++ +|.-.. ..++.||+++|+|+|+. |...+...+++ .|.. +.. .+.
T Consensus 244 ~~~v~~~g~~~~~~~~~~~ad~--~v~~s~~e~~~~~~~Ea~a~G~PvI~~----~~~~~~e~i~~-~g~~--~~~-~~~ 313 (360)
T cd04951 244 SNRVKLLGLRDDIAAYYNAADL--FVLSSAWEGFGLVVAEAMACELPVVAT----DAGGVREVVGD-SGLI--VPI-SDP 313 (360)
T ss_pred CCcEEEecccccHHHHHHhhce--EEecccccCCChHHHHHHHcCCCEEEe----cCCChhhEecC-CceE--eCC-CCH
Confidence 367888887755 458888887 554332 57899999999999985 44555556655 2543 333 589
Q ss_pred HHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHh
Q 046167 371 GAVEKAVRKLTVDKEGEFLRQRAAQLKEEVELSTRKGGFSYNSLNELLDLIN 422 (424)
Q Consensus 371 ~~L~~ai~~ll~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~a~~~~~~~~~ 422 (424)
+++.++|.++++++ +..++...+-++.+.+. -+....++++.+.++
T Consensus 314 ~~~~~~i~~ll~~~--~~~~~~~~~~~~~~~~~----~s~~~~~~~~~~~y~ 359 (360)
T cd04951 314 EALANKIDEILKMS--GEERDIIGARRERIVKK----FSINSIVQQWLTLYT 359 (360)
T ss_pred HHHHHHHHHHHhCC--HHHHHHHHHHHHHHHHh----cCHHHHHHHHHHHhh
Confidence 99999999998542 34444333333334433 455566666666553
No 77
>cd03799 GT1_amsK_like This is a family of GT1 glycosyltransferases found specifically in certain bacteria. amsK in Erwinia amylovora, has been reported to be involved in the biosynthesis of amylovoran, a exopolysaccharide acting as a virulence factor.
Probab=99.09 E-value=6.5e-08 Score=92.33 Aligned_cols=82 Identities=17% Similarity=0.166 Sum_probs=61.6
Q ss_pred hcCCCceeeecchhh---hhcccccccccc--c--------cchhhHHHhhhcCCceeecCcccchhhHHHHHHhhhhcc
Q 046167 295 VQENGYIVKWAPQKE---VLSHVAVGGFWS--H--------CGWNSTLESICEGVPMICMPFFEDQKVNARYLSHVWGVG 361 (424)
Q Consensus 295 ~~~nv~v~~~ip~~~---ll~~~~~~~~i~--h--------gG~~t~~eal~~GvP~v~~P~~~DQ~~na~~~~~~~G~g 361 (424)
.++|+.+.+++|+.+ ++..+++ ++. . |...++.||+++|+|+|+.+.. .....++.. ..|
T Consensus 234 ~~~~v~~~g~~~~~~l~~~~~~adi--~l~~s~~~~~~~~e~~~~~~~Ea~a~G~Pvi~~~~~----~~~~~i~~~-~~g 306 (355)
T cd03799 234 LEDRVTLLGAKSQEEVRELLRAADL--FVLPSVTAADGDREGLPVVLMEAMAMGLPVISTDVS----GIPELVEDG-ETG 306 (355)
T ss_pred CCCeEEECCcCChHHHHHHHHhCCE--EEecceecCCCCccCccHHHHHHHHcCCCEEecCCC----CcchhhhCC-Cce
Confidence 347888999998654 7777777 555 2 3357899999999999997542 233455552 588
Q ss_pred eecCcccchHHHHHHHHHHhccc
Q 046167 362 LELEHELERGAVEKAVRKLTVDK 384 (424)
Q Consensus 362 ~~~~~~~~~~~L~~ai~~ll~~~ 384 (424)
..+.. -+.+++.++|.++++|+
T Consensus 307 ~~~~~-~~~~~l~~~i~~~~~~~ 328 (355)
T cd03799 307 LLVPP-GDPEALADAIERLLDDP 328 (355)
T ss_pred EEeCC-CCHHHHHHHHHHHHhCH
Confidence 77776 58999999999999984
No 78
>cd04955 GT1_like_6 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=99.08 E-value=4.6e-08 Score=93.76 Aligned_cols=334 Identities=13% Similarity=0.096 Sum_probs=157.0
Q ss_pred ccChHHHHHHHHHHHhCCCeEEEEeCCCCCCC-CCCCCCceEEeCCCCCCCCccccccHHHHHHHHHHhchhHHHHHHHH
Q 046167 19 QGHINPMLQLGTILHSKGFSITVVHTQFNSPN-PSNHPEFEFQSIPDGLMDVNISARNLVDSILLLNENCREPFRNWLVQ 97 (424)
Q Consensus 19 ~GH~~p~~~la~~L~~~Gh~V~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (424)
+|=-.-...++++|.++||+|++++....... .....|+++..++..- ..........+. .+...
T Consensus 15 gG~~~~~~~la~~L~~~g~~v~v~~~~~~~~~~~~~~~~i~~~~~~~~~------~~~~~~~~~~~~--------~~~~~ 80 (363)
T cd04955 15 GGFETFVEELAPRLVARGHEVTVYCRSPYPKQKETEYNGVRLIHIPAPE------IGGLGTIIYDIL--------AILHA 80 (363)
T ss_pred CcHHHHHHHHHHHHHhcCCCEEEEEccCCCCCcccccCCceEEEcCCCC------ccchhhhHHHHH--------HHHHH
Confidence 34344566899999999999999998633322 2333678887776321 011111111111 11111
Q ss_pred HHhhcCCCCCceEEEecCcc-chHHHHHHHhCCceEEEecchHHHHHHHHhhhcccccCCCCCChhHHHHHHHhhhccCC
Q 046167 98 MIKEQQPGDEIVCIIYDEVM-YFAEASASQLNVQSIILRTSGAVTVVARLVLFQLKEEGYNPLKESYVQLINNAYSARTS 176 (424)
Q Consensus 98 ~~~~~~~~~~pDlvi~d~~~-~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~ 176 (424)
+.. .. ++|++...... ......++..++|++...+..... . ..+............+ .....+
T Consensus 81 ~~~--~~--~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~h~~~~~--------~---~~~~~~~~~~~~~~~~-~~~~~a 144 (363)
T cd04955 81 LFV--KR--DIDHVHALGPAIAPFLPLLRLKGKKVVVNMDGLEWK--------R---AKWGRPAKRYLKFGEK-LAVKFA 144 (363)
T ss_pred Hhc--cC--CeEEEEecCccHHHHHHHHHhcCCCEEEEccCccee--------e---cccccchhHHHHHHHH-HHHhhc
Confidence 111 11 67777765322 233456667799999875542110 0 0000000001111111 123456
Q ss_pred ceEEecChhhhhHHHHHHHHhccCCCeeeecccccCCCCCCCCCcccccccccccccCCCCeEEEEEeCCcccCCHHHHH
Q 046167 177 SAVISNTIYCLEESVLSQLQQYFKVPNFPIGPLHKFAPSSNGSLLKEDTSCISWLNNQSPKSVIYVSLGSVASMDKKELE 256 (424)
Q Consensus 177 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vGp~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~I~vs~Gs~~~~~~~~~~ 256 (424)
+.++..+-...+ .+...++.+...+..-..... ..+ .......... +++. .++..|+... .+-+.
T Consensus 145 d~ii~~s~~~~~-----~~~~~~~~~~~~i~ngv~~~~-----~~~-~~~~~~~~~~-~~~~-~i~~~G~~~~--~Kg~~ 209 (363)
T cd04955 145 DRLIADSPGIKE-----YLKEKYGRDSTYIPYGADHVV-----SSE-EDEILKKYGL-EPGR-YYLLVGRIVP--ENNID 209 (363)
T ss_pred cEEEeCCHHHHH-----HHHHhcCCCCeeeCCCcChhh-----cch-hhhhHHhcCC-CCCc-EEEEEecccc--cCCHH
Confidence 677766643222 122223222222222111100 000 0001111121 1222 3445688763 34455
Q ss_pred HHHHHHHhCC--CCeEEEEcCCCCCCCcccccCchhHHH--HhcCCCceeeecchhh---hhccccccccccccc-----
Q 046167 257 EMAWGLVNSK--QPFLWVIRPRTNNAPEGIELLPKVLAE--DVQENGYIVKWAPQKE---VLSHVAVGGFWSHCG----- 324 (424)
Q Consensus 257 ~~~~a~~~~~--~~~i~~~~~~~~~~~~~~~~l~~~~~~--~~~~nv~v~~~ip~~~---ll~~~~~~~~i~hgG----- 324 (424)
.++++++++. .+++ .++.+... ..+...+.+ ...++|.+.+++++.+ ++..+++ ++.++-
T Consensus 210 ~li~a~~~l~~~~~l~-ivG~~~~~-----~~~~~~~~~~~~~~~~V~~~g~~~~~~~~~~~~~ad~--~v~ps~~~e~~ 281 (363)
T cd04955 210 DLIEAFSKSNSGKKLV-IVGNADHN-----TPYGKLLKEKAAADPRIIFVGPIYDQELLELLRYAAL--FYLHGHSVGGT 281 (363)
T ss_pred HHHHHHHhhccCceEE-EEcCCCCc-----chHHHHHHHHhCCCCcEEEccccChHHHHHHHHhCCE--EEeCCccCCCC
Confidence 5666776654 3443 33222111 112222221 2347888999999865 5655666 544432
Q ss_pred hhhHHHhhhcCCceeecCcccchhhHHHHHHhhhhcceecCcccchHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHh
Q 046167 325 WNSTLESICEGVPMICMPFFEDQKVNARYLSHVWGVGLELEHELERGAVEKAVRKLTVDKEGEFLRQRAAQLKEEVELST 404 (424)
Q Consensus 325 ~~t~~eal~~GvP~v~~P~~~DQ~~na~~~~~~~G~g~~~~~~~~~~~L~~ai~~ll~~~~~~~~~~~a~~l~~~~~~~~ 404 (424)
..++.||+++|+|+|+....+ +...++. .|..... -+. ++++|.++++|+ ...++ +++..++.+
T Consensus 282 ~~~~~EAma~G~PvI~s~~~~----~~e~~~~---~g~~~~~-~~~--l~~~i~~l~~~~---~~~~~---~~~~~~~~~ 345 (363)
T cd04955 282 NPSLLEAMAYGCPVLASDNPF----NREVLGD---KAIYFKV-GDD--LASLLEELEADP---EEVSA---MAKAARERI 345 (363)
T ss_pred ChHHHHHHHcCCCEEEecCCc----cceeecC---CeeEecC-chH--HHHHHHHHHhCH---HHHHH---HHHHHHHHH
Confidence 257899999999999875432 2222222 2222332 122 999999999983 22222 222222222
Q ss_pred hcCCCcHHHHHHHHHHH
Q 046167 405 RKGGFSYNSLNELLDLI 421 (424)
Q Consensus 405 ~~~g~~~~a~~~~~~~~ 421 (424)
.+.-+....++.+++.+
T Consensus 346 ~~~fs~~~~~~~~~~~y 362 (363)
T cd04955 346 REKYTWEKIADQYEELY 362 (363)
T ss_pred HHhCCHHHHHHHHHHHh
Confidence 22245566777777654
No 79
>TIGR02149 glgA_Coryne glycogen synthase, Corynebacterium family. This model describes Corynebacterium glutamicum GlgA and closely related proteins in several other species. This enzyme is required for glycogen biosynthesis and appears to replace the distantly related TIGR02095 family of ADP-glucose type glycogen synthase in Corynebacterium glutamicum, Mycobacterium tuberculosis, Bifidobacterium longum, and Streptomyces coelicolor.
Probab=99.07 E-value=6.9e-08 Score=93.64 Aligned_cols=164 Identities=13% Similarity=0.106 Sum_probs=94.7
Q ss_pred CeEEEEEeCCcccCCHHHHHHHHHHHHhC--CCCeEEEEcCCCCCCCcccccCchhHHHH---hc---CCCcee-eecch
Q 046167 237 KSVIYVSLGSVASMDKKELEEMAWGLVNS--KQPFLWVIRPRTNNAPEGIELLPKVLAED---VQ---ENGYIV-KWAPQ 307 (424)
Q Consensus 237 ~~~I~vs~Gs~~~~~~~~~~~~~~a~~~~--~~~~i~~~~~~~~~~~~~~~~l~~~~~~~---~~---~nv~v~-~~ip~ 307 (424)
+.++++..|+.. +.+-+..++++++++ +..++++.++.. . ..+.+.+.+. .. +++.+. +++++
T Consensus 200 ~~~~i~~~Grl~--~~Kg~~~li~a~~~l~~~~~l~i~g~g~~--~----~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 271 (388)
T TIGR02149 200 SRPYILFVGRIT--RQKGVPHLLDAVHYIPKDVQVVLCAGAPD--T----PEVAEEVRQAVALLDRNRTGIIWINKMLPK 271 (388)
T ss_pred CceEEEEEcccc--cccCHHHHHHHHHHHhhcCcEEEEeCCCC--c----HHHHHHHHHHHHHhccccCceEEecCCCCH
Confidence 335566668776 344455566666654 345554443221 1 1111222221 11 234443 67776
Q ss_pred hh---hhccccccccccc----cchhhHHHhhhcCCceeecCcccchhhHHHHHHhhhhcceecCcccch------HHHH
Q 046167 308 KE---VLSHVAVGGFWSH----CGWNSTLESICEGVPMICMPFFEDQKVNARYLSHVWGVGLELEHELER------GAVE 374 (424)
Q Consensus 308 ~~---ll~~~~~~~~i~h----gG~~t~~eal~~GvP~v~~P~~~DQ~~na~~~~~~~G~g~~~~~~~~~------~~L~ 374 (424)
.+ ++..+++ +|.- |...++.||+++|+|+|+... ......++.. +.|..++. -+. +.+.
T Consensus 272 ~~~~~~~~~aDv--~v~ps~~e~~g~~~lEA~a~G~PvI~s~~----~~~~e~i~~~-~~G~~~~~-~~~~~~~~~~~l~ 343 (388)
T TIGR02149 272 EELVELLSNAEV--FVCPSIYEPLGIVNLEAMACGTPVVASAT----GGIPEVVVDG-ETGFLVPP-DNSDADGFQAELA 343 (388)
T ss_pred HHHHHHHHhCCE--EEeCCccCCCChHHHHHHHcCCCEEEeCC----CCHHHHhhCC-CceEEcCC-CCCcccchHHHHH
Confidence 54 7877777 6643 224577999999999999754 4566677774 78888876 344 8999
Q ss_pred HHHHHHhcccc-hHHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHhc
Q 046167 375 KAVRKLTVDKE-GEFLRQRAAQLKEEVELSTRKGGFSYNSLNELLDLINK 423 (424)
Q Consensus 375 ~ai~~ll~~~~-~~~~~~~a~~l~~~~~~~~~~~g~~~~a~~~~~~~~~~ 423 (424)
++|.++++|++ ...+.+++++ .+++. -+....++.+++.+++
T Consensus 344 ~~i~~l~~~~~~~~~~~~~a~~---~~~~~----~s~~~~~~~~~~~y~~ 386 (388)
T TIGR02149 344 KAINILLADPELAKKMGIAGRK---RAEEE----FSWGSIAKKTVEMYRK 386 (388)
T ss_pred HHHHHHHhCHHHHHHHHHHHHH---HHHHh----CCHHHHHHHHHHHHHh
Confidence 99999999842 1122223222 22222 4555667777766654
No 80
>TIGR00236 wecB UDP-N-acetylglucosamine 2-epimerase. Epimerase activity was also demonstrated in a bifunctional rat enzyme, for which the N-terminal domain appears to be orthologous. The set of proteins found above the suggested cutoff includes E. coli WecB in one of two deeply branched clusters and the rat UDP-N-acetylglucosamine 2-epimerase domain in the other.
Probab=99.06 E-value=7.7e-09 Score=99.53 Aligned_cols=345 Identities=11% Similarity=0.088 Sum_probs=168.2
Q ss_pred ceEEEEcCCCccChHHHHHHHHHHHhC-CCeEEEEeCCCCCCC---CCCCCCceE-EeCCCCCCCCccccccHHHHHHHH
Q 046167 9 RRVVLVPSPHQGHINPMLQLGTILHSK-GFSITVVHTQFNSPN---PSNHPEFEF-QSIPDGLMDVNISARNLVDSILLL 83 (424)
Q Consensus 9 ~ril~~~~~~~GH~~p~~~la~~L~~~-Gh~V~~~~~~~~~~~---~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 83 (424)
|||++++ ++..|+.=+.++.++|.++ +.++.++.+...... ..+.-++.. +.+. + +. ...+........
T Consensus 1 ~~i~~~~-gtr~~~~~~~p~~~~l~~~~~~~~~~~~tg~h~~~~~~~~~~~~i~~~~~~~--~--~~-~~~~~~~~~~~~ 74 (365)
T TIGR00236 1 LKVSIVL-GTRPEAIKMAPLIRALKKYPEIDSYVIVTAQHREMLDQVLDLFHLPPDYDLN--I--MS-PGQTLGEITSNM 74 (365)
T ss_pred CeEEEEE-ecCHHHHHHHHHHHHHhhCCCCCEEEEEeCCCHHHHHHHHHhcCCCCCeeee--c--CC-CCCCHHHHHHHH
Confidence 4676655 4888888899999999987 556666655422211 010011110 0001 0 00 112222222221
Q ss_pred HHhchhHHHHHHHHHHhhcCCCCCceEEEecCc-c--chHHHHHHHhCCceEEEecchHHHHHHHHhhhcccccCCCCCC
Q 046167 84 NENCREPFRNWLVQMIKEQQPGDEIVCIIYDEV-M--YFAEASASQLNVQSIILRTSGAVTVVARLVLFQLKEEGYNPLK 160 (424)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~pDlvi~d~~-~--~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 160 (424)
. ..+.+++++. +||+|++..- . .++..+|..+|||++.+.... . .. ..+.+..
T Consensus 75 ~----~~l~~~l~~~--------~pDiv~~~gd~~~~la~a~aa~~~~ipv~h~~~g~-~------s~-----~~~~~~~ 130 (365)
T TIGR00236 75 L----EGLEELLLEE--------KPDIVLVQGDTTTTLAGALAAFYLQIPVGHVEAGL-R------TG-----DRYSPMP 130 (365)
T ss_pred H----HHHHHHHHHc--------CCCEEEEeCCchHHHHHHHHHHHhCCCEEEEeCCC-C------cC-----CCCCCCc
Confidence 1 2333345555 8999999742 2 567789999999998653221 0 00 0011111
Q ss_pred hhHHHHHHHhhhccCCceEEecChhhhhHHHHHHHHhccCC-CeeeecccccCCCCCCCCCcccccccccccccCCCCeE
Q 046167 161 ESYVQLINNAYSARTSSAVISNTIYCLEESVLSQLQQYFKV-PNFPIGPLHKFAPSSNGSLLKEDTSCISWLNNQSPKSV 239 (424)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~vGp~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~ 239 (424)
....+.+ . ...++.++..+-. ..... .....++ +++.+|....+.... .........+.+.+. .+++.
T Consensus 131 ~~~~r~~--~--~~~ad~~~~~s~~-~~~~l---~~~G~~~~~I~vign~~~d~~~~-~~~~~~~~~~~~~~~--~~~~~ 199 (365)
T TIGR00236 131 EEINRQL--T--GHIADLHFAPTEQ-AKDNL---LRENVKADSIFVTGNTVIDALLT-NVEIAYSSPVLSEFG--EDKRY 199 (365)
T ss_pred cHHHHHH--H--HHHHHhccCCCHH-HHHHH---HHcCCCcccEEEeCChHHHHHHH-HHhhccchhHHHhcC--CCCCE
Confidence 1000000 0 1113344443322 11111 1111222 377777543111000 000000111222222 22346
Q ss_pred EEEEeCCcccCCHHHHHHHHHHHHhC-----CCCeEEEEcCCCCCCCcccccCchhHHHHh--cCCCceeeecchh---h
Q 046167 240 IYVSLGSVASMDKKELEEMAWGLVNS-----KQPFLWVIRPRTNNAPEGIELLPKVLAEDV--QENGYIVKWAPQK---E 309 (424)
Q Consensus 240 I~vs~Gs~~~~~~~~~~~~~~a~~~~-----~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~--~~nv~v~~~ip~~---~ 309 (424)
++++.+.... ..+.+..+++++.++ +..+++...++. .....+.+.. .+|+++.+.+++. .
T Consensus 200 vl~~~hr~~~-~~k~~~~ll~a~~~l~~~~~~~~~vi~~~~~~--------~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 270 (365)
T TIGR00236 200 ILLTLHRREN-VGEPLENIFKAIREIVEEFEDVQIVYPVHLNP--------VVREPLHKHLGDSKRVHLIEPLEYLDFLN 270 (365)
T ss_pred EEEecCchhh-hhhHHHHHHHHHHHHHHHCCCCEEEEECCCCh--------HHHHHHHHHhCCCCCEEEECCCChHHHHH
Confidence 6666543322 123466666766553 344554432210 1111122222 2578888777654 4
Q ss_pred hhccccccccccccchhhHHHhhhcCCceeecCcccchhhHHHHHHhhhhcceecCcccchHHHHHHHHHHhcccchHHH
Q 046167 310 VLSHVAVGGFWSHCGWNSTLESICEGVPMICMPFFEDQKVNARYLSHVWGVGLELEHELERGAVEKAVRKLTVDKEGEFL 389 (424)
Q Consensus 310 ll~~~~~~~~i~hgG~~t~~eal~~GvP~v~~P~~~DQ~~na~~~~~~~G~g~~~~~~~~~~~L~~ai~~ll~~~~~~~~ 389 (424)
+++.+++ +|+.+|.. +.||+++|+|+|.++..++++. +... |.+..+. .+++.|.+++.++++| +..
T Consensus 271 ~l~~ad~--vv~~Sg~~-~~EA~a~g~PvI~~~~~~~~~e----~~~~-g~~~lv~--~d~~~i~~ai~~ll~~---~~~ 337 (365)
T TIGR00236 271 LAANSHL--ILTDSGGV-QEEAPSLGKPVLVLRDTTERPE----TVEA-GTNKLVG--TDKENITKAAKRLLTD---PDE 337 (365)
T ss_pred HHHhCCE--EEECChhH-HHHHHHcCCCEEECCCCCCChH----HHhc-CceEEeC--CCHHHHHHHHHHHHhC---hHH
Confidence 6666666 88877644 7999999999999976565542 2233 7666554 4899999999999988 444
Q ss_pred HHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHhcC
Q 046167 390 RQRAAQLKEEVELSTRKGGFSYNSLNELLDLINKF 424 (424)
Q Consensus 390 ~~~a~~l~~~~~~~~~~~g~~~~a~~~~~~~~~~~ 424 (424)
+++... ..+.. |. ..+.+.+++.|.+|
T Consensus 338 ~~~~~~---~~~~~----g~-~~a~~ri~~~l~~~ 364 (365)
T TIGR00236 338 YKKMSN---ASNPY----GD-GEASERIVEELLNH 364 (365)
T ss_pred HHHhhh---cCCCC----cC-chHHHHHHHHHHhh
Confidence 444332 22222 22 35556666665543
No 81
>cd03807 GT1_WbnK_like This family is most closely related to the GT1 family of glycosyltransferases. WbnK in Shigella dysenteriae has been shown to be involved in the type 7 O-antigen biosynthesis.
Probab=99.03 E-value=3.5e-07 Score=86.99 Aligned_cols=109 Identities=17% Similarity=0.184 Sum_probs=69.5
Q ss_pred CCCceeeecch-hhhhccccccccccccc----hhhHHHhhhcCCceeecCcccchhhHHHHHHhhhhcceecCcccchH
Q 046167 297 ENGYIVKWAPQ-KEVLSHVAVGGFWSHCG----WNSTLESICEGVPMICMPFFEDQKVNARYLSHVWGVGLELEHELERG 371 (424)
Q Consensus 297 ~nv~v~~~ip~-~~ll~~~~~~~~i~hgG----~~t~~eal~~GvP~v~~P~~~DQ~~na~~~~~~~G~g~~~~~~~~~~ 371 (424)
+++.+.+.... ..++..+++ +|..+. .+++.||+++|+|+|+... ..+...+.+ .|..++. -+.+
T Consensus 251 ~~v~~~g~~~~~~~~~~~adi--~v~ps~~e~~~~~~~Ea~a~g~PvI~~~~----~~~~e~~~~---~g~~~~~-~~~~ 320 (365)
T cd03807 251 DKVILLGERSDVPALLNALDV--FVLSSLSEGFPNVLLEAMACGLPVVATDV----GDNAELVGD---TGFLVPP-GDPE 320 (365)
T ss_pred ceEEEccccccHHHHHHhCCE--EEeCCccccCCcHHHHHHhcCCCEEEcCC----CChHHHhhc---CCEEeCC-CCHH
Confidence 56666665443 358877877 665433 4789999999999998643 444555544 3444554 4799
Q ss_pred HHHHHHHHHhcccchHHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHH
Q 046167 372 AVEKAVRKLTVDKEGEFLRQRAAQLKEEVELSTRKGGFSYNSLNELLDLI 421 (424)
Q Consensus 372 ~L~~ai~~ll~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~a~~~~~~~~ 421 (424)
++.++|.++++|+ +.+++..+...+.+++. -+..+.++.+.+.+
T Consensus 321 ~l~~~i~~l~~~~--~~~~~~~~~~~~~~~~~----~s~~~~~~~~~~~y 364 (365)
T cd03807 321 ALAEAIEALLADP--ALRQALGEAARERIEEN----FSIEAMVEAYEELY 364 (365)
T ss_pred HHHHHHHHHHhCh--HHHHHHHHHHHHHHHHh----CCHHHHHHHHHHHh
Confidence 9999999999984 22333333333333333 56666777766654
No 82
>PRK14089 ipid-A-disaccharide synthase; Provisional
Probab=99.02 E-value=4.3e-08 Score=92.25 Aligned_cols=318 Identities=14% Similarity=0.055 Sum_probs=169.4
Q ss_pred ceEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCCCCCCCCCCCCCceEEeCCCCCCCCccccccHHHHHHHHHHhch
Q 046167 9 RRVVLVPSPHQGHINPMLQLGTILHSKGFSITVVHTQFNSPNPSNHPEFEFQSIPDGLMDVNISARNLVDSILLLNENCR 88 (424)
Q Consensus 9 ~ril~~~~~~~GH~~p~~~la~~L~~~Gh~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (424)
+||+++++=..|++.- ..|.++|++ ++.+.+-..... +..-++......-++.+.+..+. ...
T Consensus 2 ~~i~i~aGE~SGD~~g-a~l~~~l~~---~~~~~G~GG~~m------------~~~~~~~~~lsv~G~~evl~~~~-~~~ 64 (347)
T PRK14089 2 MKILVSALEPSANLHL-KELLKNLPK---DYELIGIFDKSL------------GNPLYDSREFSIMGFVDVLPKLF-FAK 64 (347)
T ss_pred cEEEEEeccccHHHHH-HHHHHHHhc---CCEEEEEechHH------------HHhcCChHHhhhhhHHHHHHHHH-HHH
Confidence 4898888888898764 457788877 555554431111 01011111122234555554443 223
Q ss_pred hHHHHHHHHHHhhcCCCCCceEEEe-cCcc--chHHHHHHHh--CCceEEEecchHHHHHHHHhhhcccccCCCCCChhH
Q 046167 89 EPFRNWLVQMIKEQQPGDEIVCIIY-DEVM--YFAEASASQL--NVQSIILRTSGAVTVVARLVLFQLKEEGYNPLKESY 163 (424)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~pDlvi~-d~~~--~~~~~~A~~l--giP~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 163 (424)
..++++.+.. . +||++|. |+-. ......+++. |||++.+.+ |+. |.+.+.+
T Consensus 65 ~~~~~~~~~~--~-----~pd~~i~iD~p~Fnl~lak~~k~~~~~i~viyyi~------------Pqv--WAWr~~R--- 120 (347)
T PRK14089 65 KAIKEMVELA--K-----QADKVLLMDSSSFNIPLAKKIKKAYPKKEIIYYIL------------PQV--WAWKKGR--- 120 (347)
T ss_pred HHHHHHHHHh--c-----CCCEEEEeCCCCCCHHHHHHHHhcCCCCCEEEEEC------------ccc--eeeCcch---
Confidence 3334444443 1 8998776 6422 4444566677 799886532 222 2222221
Q ss_pred HHHHHHhhhccCCceEEecChhhhhHHHHHHHHhccCCCeeeec-ccccCCCCCCCCCcccccccccccccCCCCeEEEE
Q 046167 164 VQLINNAYSARTSSAVISNTIYCLEESVLSQLQQYFKVPNFPIG-PLHKFAPSSNGSLLKEDTSCISWLNNQSPKSVIYV 242 (424)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vG-p~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~I~v 242 (424)
.+.+.+ ..+.-..++ -+|.+. ++.++.++| |+....+. .+ . . + +++++|.+
T Consensus 121 ~~~i~k---~~d~vl~if----PFE~~~-------yg~~~~~VGhPl~d~~~~-----~~-~----~-~---~~~~~I~l 172 (347)
T PRK14089 121 AKILEK---YCDFLASIL----PFEVQF-------YQSKATYVGHPLLDEIKE-----FK-K----D-L---DKEGTIAF 172 (347)
T ss_pred HHHHHH---HHhhhhccC----CCCHHH-------hCCCCEEECCcHHHhhhh-----hh-h----h-c---CCCCEEEE
Confidence 111111 111111111 122221 246788999 54432110 00 0 0 2 22368999
Q ss_pred EeCCcccCCHHHHHHHHHHHHhCCCC-eEEEEcCCCCCCCcccccCchhHHHHhcC--CCceeeecchhhhhcccccccc
Q 046167 243 SLGSVASMDKKELEEMAWGLVNSKQP-FLWVIRPRTNNAPEGIELLPKVLAEDVQE--NGYIVKWAPQKEVLSHVAVGGF 319 (424)
Q Consensus 243 s~Gs~~~~~~~~~~~~~~a~~~~~~~-~i~~~~~~~~~~~~~~~~l~~~~~~~~~~--nv~v~~~ip~~~ll~~~~~~~~ 319 (424)
-.||....-...+..++++..++... .++.+.... .. +.+.+...+ .+.+.+ ...+++..+++ +
T Consensus 173 lPGSR~~Ei~~llP~~~~aa~~L~~~~~~~~i~~a~--------~~-~~i~~~~~~~~~~~~~~--~~~~~m~~aDl--a 239 (347)
T PRK14089 173 MPGSRKSEIKRLMPIFKELAKKLEGKEKILVVPSFF--------KG-KDLKEIYGDISEFEISY--DTHKALLEAEF--A 239 (347)
T ss_pred ECCCCHHHHHHHHHHHHHHHHHHhhcCcEEEEeCCC--------cH-HHHHHHHhcCCCcEEec--cHHHHHHhhhH--H
Confidence 99998863335555455555544322 333332110 01 223222222 222222 33458877777 9
Q ss_pred ccccchhhHHHhhhcCCceeecC-cccchhhHHHHHH---hhhhcceec-------------Cc-ccchHHHHHHHHHHh
Q 046167 320 WSHCGWNSTLESICEGVPMICMP-FFEDQKVNARYLS---HVWGVGLEL-------------EH-ELERGAVEKAVRKLT 381 (424)
Q Consensus 320 i~hgG~~t~~eal~~GvP~v~~P-~~~DQ~~na~~~~---~~~G~g~~~-------------~~-~~~~~~L~~ai~~ll 381 (424)
|+-+|..|+ |++.+|+|+|+.= ...-|+.||+++. . .|+.-.+ .. +.|++.|.+.+.+ +
T Consensus 240 l~~SGT~TL-E~al~g~P~Vv~Yk~~~lty~iak~lv~~~~-igL~Nii~~~~~~~~vvPEllQ~~~t~~~la~~i~~-~ 316 (347)
T PRK14089 240 FICSGTATL-EAALIGTPFVLAYKAKAIDYFIAKMFVKLKH-IGLANIFFDFLGKEPLHPELLQEFVTVENLLKAYKE-M 316 (347)
T ss_pred HhcCcHHHH-HHHHhCCCEEEEEeCCHHHHHHHHHHHcCCe-eehHHHhcCCCcccccCchhhcccCCHHHHHHHHHH-H
Confidence 999999999 9999999999832 2346899999998 4 3555333 22 6899999999988 2
Q ss_pred cccchHHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHH
Q 046167 382 VDKEGEFLRQRAAQLKEEVELSTRKGGFSYNSLNELLD 419 (424)
Q Consensus 382 ~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~a~~~~~~ 419 (424)
.. +.+++...++.+.+. . +.+.++++.+.|
T Consensus 317 ~~---~~~~~~~~~l~~~l~-~----~a~~~~A~~i~~ 346 (347)
T PRK14089 317 DR---EKFFKKSKELREYLK-H----GSAKNVAKILKE 346 (347)
T ss_pred HH---HHHHHHHHHHHHHhc-C----CHHHHHHHHHhc
Confidence 22 567777777666663 2 566666665554
No 83
>PLN02275 transferase, transferring glycosyl groups
Probab=99.02 E-value=3.1e-07 Score=88.54 Aligned_cols=322 Identities=12% Similarity=0.072 Sum_probs=160.7
Q ss_pred ceEEEEcCCCccChHHHHHHHHHHHhCCC-eEEEEeCCCCCCC--CCCCCCceEEeCCCCCCCCccccccHHHHHHHHHH
Q 046167 9 RRVVLVPSPHQGHINPMLQLGTILHSKGF-SITVVHTQFNSPN--PSNHPEFEFQSIPDGLMDVNISARNLVDSILLLNE 85 (424)
Q Consensus 9 ~ril~~~~~~~GH~~p~~~la~~L~~~Gh-~V~~~~~~~~~~~--~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (424)
.|+.+...+-.|.-..+..++..|+++|| +|++++....... .....|+....++. +............+..+..
T Consensus 5 ~~~~~~~~~~~g~~~r~~~~~~~l~~~~~~~v~vi~~~~~~~~~~~~~~~~v~v~r~~~--~~~~~~~~~~~~~~~~~~~ 82 (371)
T PLN02275 5 GRAAVVVLGDFGRSPRMQYHALSLARQASFQVDVVAYGGSEPIPALLNHPSIHIHLMVQ--PRLLQRLPRVLYALALLLK 82 (371)
T ss_pred cEEEEEEecCCCCCHHHHHHHHHHHhcCCceEEEEEecCCCCCHHHhcCCcEEEEECCC--cccccccccchHHHHHHHH
Confidence 46667777888888999999999999986 7999987533222 22235688888874 1111111112221111111
Q ss_pred hchhHHHHHHHHH--HhhcCCCCCceEEEecCcc-----chHHHHHHHhCCceEEEecchHHHHHHHHhhhcccccCCCC
Q 046167 86 NCREPFRNWLVQM--IKEQQPGDEIVCIIYDEVM-----YFAEASASQLNVQSIILRTSGAVTVVARLVLFQLKEEGYNP 158 (424)
Q Consensus 86 ~~~~~~~~~~~~~--~~~~~~~~~pDlvi~d~~~-----~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~~~p 158 (424)
. ...+..++..+ +.. +||+|++.... ..+..+++..++|++...+..+... . .... ...+
T Consensus 83 ~-~~~~~~~~~~~~~~~~-----~~DvV~~~~~~~~~~~~~~~~~~~~~~~p~v~~~h~~~~~~--~-~~~~----~~~~ 149 (371)
T PLN02275 83 V-AIQFLMLLWFLCVKIP-----RPDVFLVQNPPSVPTLAVVKLACWLRRAKFVIDWHNFGYTL--L-ALSL----GRSH 149 (371)
T ss_pred H-HHHHHHHHHHHHhhCC-----CCCEEEEeCCCCcHHHHHHHHHHHHhCCCEEEEcCCccHHH--H-hccc----CCCC
Confidence 0 00111111111 112 89999986322 2334567778999998766543111 0 0000 0000
Q ss_pred CChhHHHHHHHhhhccCCceEEecChhhhhHHHHHHHHhccCCCeeeecccccCCCCCCCCCcccccccccccccCCCCe
Q 046167 159 LKESYVQLINNAYSARTSSAVISNTIYCLEESVLSQLQQYFKVPNFPIGPLHKFAPSSNGSLLKEDTSCISWLNNQSPKS 238 (424)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vGp~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~ 238 (424)
........+.+ ...+.++.++..|-...+ .+...++.++..+-..... ...+.... .. +. .+++
T Consensus 150 ~~~~~~~~~e~-~~~~~ad~ii~~S~~~~~-----~l~~~~g~~i~vi~n~~~~------~f~~~~~~-~~-~~--~~~~ 213 (371)
T PLN02275 150 PLVRLYRWYER-HYGKMADGHLCVTKAMQH-----ELDQNWGIRATVLYDQPPE------FFRPASLE-IR-LR--PNRP 213 (371)
T ss_pred HHHHHHHHHHH-HHHhhCCEEEECCHHHHH-----HHHHhcCCCeEEECCCCHH------HcCcCCch-hc-cc--CCCc
Confidence 00001122222 123557777776643222 1122122222222111000 00010000 01 11 2233
Q ss_pred EEEEEeCCcccCCHHHHHHHHHHHHhC--------------------CCCeEEEEcCCCCCCCcccccCchhHHHHh---
Q 046167 239 VIYVSLGSVASMDKKELEEMAWGLVNS--------------------KQPFLWVIRPRTNNAPEGIELLPKVLAEDV--- 295 (424)
Q Consensus 239 ~I~vs~Gs~~~~~~~~~~~~~~a~~~~--------------------~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~--- 295 (424)
.++++.|.... .+-+..+++++... ..++.+.+-|++. ..+.+.+..
T Consensus 214 ~~i~~~grl~~--~k~~~~li~a~~~l~~~~~~~~~~~~~~~~~~~~~~~i~l~ivG~G~--------~~~~l~~~~~~~ 283 (371)
T PLN02275 214 ALVVSSTSWTP--DEDFGILLEAAVMYDRRVAARLNESDSASGKQSLYPRLLFIITGKGP--------QKAMYEEKISRL 283 (371)
T ss_pred EEEEEeCceec--cCCHHHHHHHHHHHHhhhhhccccccccccccccCCCeEEEEEeCCC--------CHHHHHHHHHHc
Confidence 45556677663 22233333443321 1233333333321 122332222
Q ss_pred c-CCCceee-ecchhh---hhcccccccccc----c--cc-hhhHHHhhhcCCceeecCcccchhhHHHHHHhhhhccee
Q 046167 296 Q-ENGYIVK-WAPQKE---VLSHVAVGGFWS----H--CG-WNSTLESICEGVPMICMPFFEDQKVNARYLSHVWGVGLE 363 (424)
Q Consensus 296 ~-~nv~v~~-~ip~~~---ll~~~~~~~~i~----h--gG-~~t~~eal~~GvP~v~~P~~~DQ~~na~~~~~~~G~g~~ 363 (424)
+ +|+.+.+ |+|..+ +|+.+|+ +|. . -| .+++.||+++|+|+|+... ..+...++++ +.|..
T Consensus 284 ~l~~v~~~~~~~~~~~~~~~l~~aDv--~v~~~~s~~~e~~p~~llEAmA~G~PVVa~~~----gg~~eiv~~g-~~G~l 356 (371)
T PLN02275 284 NLRHVAFRTMWLEAEDYPLLLGSADL--GVSLHTSSSGLDLPMKVVDMFGCGLPVCAVSY----SCIGELVKDG-KNGLL 356 (371)
T ss_pred CCCceEEEcCCCCHHHHHHHHHhCCE--EEEeccccccccccHHHHHHHHCCCCEEEecC----CChHHHccCC-CCeEE
Confidence 2 5566654 788765 6878887 663 1 12 4579999999999999743 3466777775 78988
Q ss_pred cCcccchHHHHHHHHHHh
Q 046167 364 LEHELERGAVEKAVRKLT 381 (424)
Q Consensus 364 ~~~~~~~~~L~~ai~~ll 381 (424)
++ ++++|+++|.++|
T Consensus 357 v~---~~~~la~~i~~l~ 371 (371)
T PLN02275 357 FS---SSSELADQLLELL 371 (371)
T ss_pred EC---CHHHHHHHHHHhC
Confidence 76 5889999998875
No 84
>cd03811 GT1_WabH_like This family is most closely related to the GT1 family of glycosyltransferases. WabH in Klebsiella pneumoniae has been shown to transfer a GlcNAc residue from UDP-GlcNAc onto the acceptor GalUA residue in the cellular outer core.
Probab=99.01 E-value=1.5e-07 Score=88.95 Aligned_cols=311 Identities=15% Similarity=0.139 Sum_probs=155.7
Q ss_pred eEEEEcCC--CccChHHHHHHHHHHHhCCCeEEEEeCCCCCCCCCCCC-CceEEeCCCCCCCCccccccHHHHHHHHHHh
Q 046167 10 RVVLVPSP--HQGHINPMLQLGTILHSKGFSITVVHTQFNSPNPSNHP-EFEFQSIPDGLMDVNISARNLVDSILLLNEN 86 (424)
Q Consensus 10 ril~~~~~--~~GH~~p~~~la~~L~~~Gh~V~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (424)
||++++.. .+|+-..+..++++|.+.||+|++++............ ........ . ..........
T Consensus 1 kIl~~~~~~~~gG~~~~~~~l~~~l~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~~~------~-~~~~~~~~~~----- 68 (353)
T cd03811 1 KILFVIPSLGGGGAERVLLNLANGLDKRGYDVTLVVLRDEGDYLELLPSNVKLIPVR------V-LKLKSLRDLL----- 68 (353)
T ss_pred CeEEEeecccCCCcchhHHHHHHHHHhcCceEEEEEcCCCCccccccccchhhhcee------e-eecccccchh-----
Confidence 45555543 67888889999999999999999999853332211100 00000000 0 0000000000
Q ss_pred chhHHHHHHHHHHhhcCCCCCceEEEecCc--cchHHHHHHHhCCceEEEecchHHHHHHHHhhhcccccCCCCCChhHH
Q 046167 87 CREPFRNWLVQMIKEQQPGDEIVCIIYDEV--MYFAEASASQLNVQSIILRTSGAVTVVARLVLFQLKEEGYNPLKESYV 164 (424)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~pDlvi~d~~--~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 164 (424)
....+...++.. +||+|++... ......++...++|++...+............ .
T Consensus 69 ~~~~~~~~~~~~--------~~dii~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~---------------~ 125 (353)
T cd03811 69 AILRLRRLLRKE--------KPDVVISHLTTTPNVLALLAARLGTKLIVWEHNSLSLELKRKLR---------------L 125 (353)
T ss_pred HHHHHHHHHHhc--------CCCEEEEcCccchhHHHHHHhhcCCceEEEEcCcchhhhccchh---------------H
Confidence 011122333443 7999999875 22233344444789998777654332111000 0
Q ss_pred HHHHHhhhccCCceEEecChhhhhHHHHHHHHhccC---CCeeeecccccCCCCCCCCCcccccccccccccCCCCeEEE
Q 046167 165 QLINNAYSARTSSAVISNTIYCLEESVLSQLQQYFK---VPNFPIGPLHKFAPSSNGSLLKEDTSCISWLNNQSPKSVIY 241 (424)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~---~~~~~vGp~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~I~ 241 (424)
. ..........+.++..+-...+ .+...++ .++..+.+....... ...... .. . . ....++.++
T Consensus 126 ~-~~~~~~~~~~d~ii~~s~~~~~-----~~~~~~~~~~~~~~vi~~~~~~~~~---~~~~~~-~~-~-~-~~~~~~~~i 192 (353)
T cd03811 126 L-LLIRKLYRRADKIVAVSEGVKE-----DLLKLLGIPPDKIEVIYNPIDIEEI---RALAEE-PL-E-L-GIPPDGPVI 192 (353)
T ss_pred H-HHHHhhccccceEEEeccchhh-----hHHHhhcCCccccEEecCCcChhhc---Ccccch-hh-h-c-CCCCCceEE
Confidence 0 0002224556666665533221 1112122 334444433322110 000000 00 0 0 112345677
Q ss_pred EEeCCcccCCHHHHHHHHHHHHhCC---CCeEEEEcCCCCCCCcccccCchhHHHH--hcCCCceeeecchh-hhhcccc
Q 046167 242 VSLGSVASMDKKELEEMAWGLVNSK---QPFLWVIRPRTNNAPEGIELLPKVLAED--VQENGYIVKWAPQK-EVLSHVA 315 (424)
Q Consensus 242 vs~Gs~~~~~~~~~~~~~~a~~~~~---~~~i~~~~~~~~~~~~~~~~l~~~~~~~--~~~nv~v~~~ip~~-~ll~~~~ 315 (424)
+..|+... .+.+..+++++..+. .++.+.+-+.+... ..+. ...++ ..+++.+.++.+.. .++..++
T Consensus 193 ~~~g~~~~--~k~~~~~i~~~~~l~~~~~~~~l~i~G~~~~~----~~~~-~~~~~~~~~~~v~~~g~~~~~~~~~~~~d 265 (353)
T cd03811 193 LAVGRLSP--QKGFDTLIRAFALLRKEGPDARLVILGDGPLR----EELE-ALAKELGLADRVHFLGFQSNPYPYLKAAD 265 (353)
T ss_pred EEEecchh--hcChHHHHHHHHHhhhcCCCceEEEEcCCccH----HHHH-HHHHhcCCCccEEEecccCCHHHHHHhCC
Confidence 77788763 333444445554432 23333332221100 0111 11122 23677888887654 4887887
Q ss_pred ccccccc----cchhhHHHhhhcCCceeecCcccchhhHHHHHHhhhhcceecCcccchHHH---HHHHHHHhcc
Q 046167 316 VGGFWSH----CGWNSTLESICEGVPMICMPFFEDQKVNARYLSHVWGVGLELEHELERGAV---EKAVRKLTVD 383 (424)
Q Consensus 316 ~~~~i~h----gG~~t~~eal~~GvP~v~~P~~~DQ~~na~~~~~~~G~g~~~~~~~~~~~L---~~ai~~ll~~ 383 (424)
+ +|+- |...++.||+++|+|+|+... ......+++. +.|...+. -+.+.+ .+.+..++.+
T Consensus 266 ~--~i~ps~~e~~~~~~~Ea~~~G~PvI~~~~----~~~~e~i~~~-~~g~~~~~-~~~~~~~~~~~~i~~~~~~ 332 (353)
T cd03811 266 L--FVLSSRYEGFPNVLLEAMALGTPVVATDC----PGPREILEDG-ENGLLVPV-GDEAALAAAALALLDLLLD 332 (353)
T ss_pred E--EEeCcccCCCCcHHHHHHHhCCCEEEcCC----CChHHHhcCC-CceEEECC-CCHHHHHHHHHHHHhccCC
Confidence 7 5532 335789999999999998644 3667778884 88888877 577777 6666666766
No 85
>PRK09922 UDP-D-galactose:(glucosyl)lipopolysaccharide-1,6-D-galactosyltransferase; Provisional
Probab=99.00 E-value=7.5e-08 Score=92.45 Aligned_cols=137 Identities=13% Similarity=0.102 Sum_probs=81.6
Q ss_pred eEEEEEeCCcccCCHHHHHHHHHHHHhCCCCeEEEEcCCCCCCCcccccCchhHHH-HhcCCCceeeecch--hh---hh
Q 046167 238 SVIYVSLGSVASMDKKELEEMAWGLVNSKQPFLWVIRPRTNNAPEGIELLPKVLAE-DVQENGYIVKWAPQ--KE---VL 311 (424)
Q Consensus 238 ~~I~vs~Gs~~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~-~~~~nv~v~~~ip~--~~---ll 311 (424)
+.+++..|+......+.+..+++++......+-+.+-+++... +.+.....+ .++++|.+.+|+++ .. .+
T Consensus 180 ~~~i~~~Grl~~~~~k~~~~l~~a~~~~~~~~~l~ivG~g~~~----~~l~~~~~~~~l~~~v~f~G~~~~~~~~~~~~~ 255 (359)
T PRK09922 180 PAVFLYVGRLKFEGQKNVKELFDGLSQTTGEWQLHIIGDGSDF----EKCKAYSRELGIEQRIIWHGWQSQPWEVVQQKI 255 (359)
T ss_pred CcEEEEEEEEecccCcCHHHHHHHHHhhCCCeEEEEEeCCccH----HHHHHHHHHcCCCCeEEEecccCCcHHHHHHHH
Confidence 3556666776532234455566666655333333333221110 112111111 23478899999854 22 44
Q ss_pred ccccccccccc----cchhhHHHhhhcCCceeecCcccchhhHHHHHHhhhhcceecCcccchHHHHHHHHHHhcccc
Q 046167 312 SHVAVGGFWSH----CGWNSTLESICEGVPMICMPFFEDQKVNARYLSHVWGVGLELEHELERGAVEKAVRKLTVDKE 385 (424)
Q Consensus 312 ~~~~~~~~i~h----gG~~t~~eal~~GvP~v~~P~~~DQ~~na~~~~~~~G~g~~~~~~~~~~~L~~ai~~ll~~~~ 385 (424)
..+++ +|.. |-..++.||+++|+|+|+.-. .......++++ ..|..++. -+.++++++|.++++|++
T Consensus 256 ~~~d~--~v~~s~~Egf~~~~lEAma~G~Pvv~s~~---~~g~~eiv~~~-~~G~lv~~-~d~~~la~~i~~l~~~~~ 326 (359)
T PRK09922 256 KNVSA--LLLTSKFEGFPMTLLEAMSYGIPCISSDC---MSGPRDIIKPG-LNGELYTP-GNIDEFVGKLNKVISGEV 326 (359)
T ss_pred hcCcE--EEECCcccCcChHHHHHHHcCCCEEEeCC---CCChHHHccCC-CceEEECC-CCHHHHHHHHHHHHhCcc
Confidence 44555 6643 336799999999999999741 22233456664 67877766 699999999999999954
No 86
>PRK15427 colanic acid biosynthesis glycosyltransferase WcaL; Provisional
Probab=98.98 E-value=6.3e-07 Score=87.41 Aligned_cols=163 Identities=17% Similarity=0.173 Sum_probs=100.0
Q ss_pred CeEEEEEeCCcccCCHHHHHHHHHHHHh---CCCCeEEEEcCCCCCCCcccccCchhHHH---H--hcCCCceeeecchh
Q 046167 237 KSVIYVSLGSVASMDKKELEEMAWGLVN---SKQPFLWVIRPRTNNAPEGIELLPKVLAE---D--VQENGYIVKWAPQK 308 (424)
Q Consensus 237 ~~~I~vs~Gs~~~~~~~~~~~~~~a~~~---~~~~~i~~~~~~~~~~~~~~~~l~~~~~~---~--~~~nv~v~~~ip~~ 308 (424)
.+..+++.|.... .+-+..++++++. .+.++-+.+-+++ ...+.+.+ + +.+++.+.+|+|+.
T Consensus 221 ~~~~il~vGrl~~--~Kg~~~ll~a~~~l~~~~~~~~l~ivG~G--------~~~~~l~~~~~~~~l~~~V~~~G~~~~~ 290 (406)
T PRK15427 221 TPLEIISVARLTE--KKGLHVAIEACRQLKEQGVAFRYRILGIG--------PWERRLRTLIEQYQLEDVVEMPGFKPSH 290 (406)
T ss_pred CCeEEEEEeCcch--hcCHHHHHHHHHHHHhhCCCEEEEEEECc--------hhHHHHHHHHHHcCCCCeEEEeCCCCHH
Confidence 3455666788773 3444444555543 2334433333321 11222221 2 34778899999976
Q ss_pred h---hhccccccccccc---------cch-hhHHHhhhcCCceeecCcccchhhHHHHHHhhhhcceecCcccchHHHHH
Q 046167 309 E---VLSHVAVGGFWSH---------CGW-NSTLESICEGVPMICMPFFEDQKVNARYLSHVWGVGLELEHELERGAVEK 375 (424)
Q Consensus 309 ~---ll~~~~~~~~i~h---------gG~-~t~~eal~~GvP~v~~P~~~DQ~~na~~~~~~~G~g~~~~~~~~~~~L~~ 375 (424)
+ ++..+++ +|.- -|. .+++||+++|+|+|+... ......+++. ..|..++. -++++|++
T Consensus 291 el~~~l~~aDv--~v~pS~~~~~g~~Eg~p~~llEAma~G~PVI~t~~----~g~~E~v~~~-~~G~lv~~-~d~~~la~ 362 (406)
T PRK15427 291 EVKAMLDDADV--FLLPSVTGADGDMEGIPVALMEAMAVGIPVVSTLH----SGIPELVEAD-KSGWLVPE-NDAQALAQ 362 (406)
T ss_pred HHHHHHHhCCE--EEECCccCCCCCccCccHHHHHHHhCCCCEEEeCC----CCchhhhcCC-CceEEeCC-CCHHHHHH
Confidence 5 7877777 6542 233 678999999999999754 3455666664 68887776 68999999
Q ss_pred HHHHHhc-ccc-hHHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHhcC
Q 046167 376 AVRKLTV-DKE-GEFLRQRAAQLKEEVELSTRKGGFSYNSLNELLDLINKF 424 (424)
Q Consensus 376 ai~~ll~-~~~-~~~~~~~a~~l~~~~~~~~~~~g~~~~a~~~~~~~~~~~ 424 (424)
+|.++++ |++ ...+.++++ +.+.+. -+....++++.+.++++
T Consensus 363 ai~~l~~~d~~~~~~~~~~ar---~~v~~~----f~~~~~~~~l~~~~~~~ 406 (406)
T PRK15427 363 RLAAFSQLDTDELAPVVKRAR---EKVETD----FNQQVINRELASLLQAL 406 (406)
T ss_pred HHHHHHhCCHHHHHHHHHHHH---HHHHHh----cCHHHHHHHHHHHHhhC
Confidence 9999998 732 122222322 222232 56677888888887754
No 87
>TIGR03088 stp2 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=98.96 E-value=1.1e-07 Score=91.91 Aligned_cols=112 Identities=14% Similarity=0.114 Sum_probs=73.4
Q ss_pred CCCceeeecch-hhhhccccccccc--cc--cchhhHHHhhhcCCceeecCcccchhhHHHHHHhhhhcceecCcccchH
Q 046167 297 ENGYIVKWAPQ-KEVLSHVAVGGFW--SH--CGWNSTLESICEGVPMICMPFFEDQKVNARYLSHVWGVGLELEHELERG 371 (424)
Q Consensus 297 ~nv~v~~~ip~-~~ll~~~~~~~~i--~h--gG~~t~~eal~~GvP~v~~P~~~DQ~~na~~~~~~~G~g~~~~~~~~~~ 371 (424)
+++.+.++..+ ..++..+++ +| ++ |-..++.||+++|+|+|+... ..+...+++. ..|..++. -+.+
T Consensus 255 ~~v~~~g~~~~~~~~~~~adi--~v~pS~~Eg~~~~~lEAma~G~Pvv~s~~----~g~~e~i~~~-~~g~~~~~-~d~~ 326 (374)
T TIGR03088 255 HLVWLPGERDDVPALMQALDL--FVLPSLAEGISNTILEAMASGLPVIATAV----GGNPELVQHG-VTGALVPP-GDAV 326 (374)
T ss_pred ceEEEcCCcCCHHHHHHhcCE--EEeccccccCchHHHHHHHcCCCEEEcCC----CCcHHHhcCC-CceEEeCC-CCHH
Confidence 45666665443 458888887 55 33 335789999999999999755 3456666664 67877776 6889
Q ss_pred HHHHHHHHHhcccc-hHHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHhc
Q 046167 372 AVEKAVRKLTVDKE-GEFLRQRAAQLKEEVELSTRKGGFSYNSLNELLDLINK 423 (424)
Q Consensus 372 ~L~~ai~~ll~~~~-~~~~~~~a~~l~~~~~~~~~~~g~~~~a~~~~~~~~~~ 423 (424)
+++++|.++++|++ ...+.+++++ .+.+. -+....++++++.+++
T Consensus 327 ~la~~i~~l~~~~~~~~~~~~~a~~---~~~~~----fs~~~~~~~~~~~y~~ 372 (374)
T TIGR03088 327 ALARALQPYVSDPAARRAHGAAGRA---RAEQQ----FSINAMVAAYAGLYDQ 372 (374)
T ss_pred HHHHHHHHHHhCHHHHHHHHHHHHH---HHHHh----CCHHHHHHHHHHHHHH
Confidence 99999999998832 1122223322 22222 4556677777766654
No 88
>PLN00142 sucrose synthase
Probab=98.94 E-value=3.6e-07 Score=93.81 Aligned_cols=79 Identities=10% Similarity=0.106 Sum_probs=52.1
Q ss_pred CCCceeee----cchhhhhc----cccccccccc---cch-hhHHHhhhcCCceeecCcccchhhHHHHHHhhhhcceec
Q 046167 297 ENGYIVKW----APQKEVLS----HVAVGGFWSH---CGW-NSTLESICEGVPMICMPFFEDQKVNARYLSHVWGVGLEL 364 (424)
Q Consensus 297 ~nv~v~~~----ip~~~ll~----~~~~~~~i~h---gG~-~t~~eal~~GvP~v~~P~~~DQ~~na~~~~~~~G~g~~~ 364 (424)
++|.+.+. .+..+++. .+++ ||.- -|. .++.||+++|+|+|+... ......++++ ..|..+
T Consensus 642 ~~V~flG~~~~~~~~~eLyr~iadaaDV--fVlPS~~EgFGLvvLEAMA~GlPVVATdv----GG~~EIV~dG-~tG~LV 714 (815)
T PLN00142 642 GQFRWIAAQTNRVRNGELYRYIADTKGA--FVQPALYEAFGLTVVEAMTCGLPTFATCQ----GGPAEIIVDG-VSGFHI 714 (815)
T ss_pred CcEEEcCCcCCcccHHHHHHHHHhhCCE--EEeCCcccCCCHHHHHHHHcCCCEEEcCC----CCHHHHhcCC-CcEEEe
Confidence 55655543 33344443 2344 6643 344 488999999999999754 4456677774 778888
Q ss_pred CcccchHHHHHHHHHH----hcc
Q 046167 365 EHELERGAVEKAVRKL----TVD 383 (424)
Q Consensus 365 ~~~~~~~~L~~ai~~l----l~~ 383 (424)
++ .+++.++++|.++ ++|
T Consensus 715 ~P-~D~eaLA~aI~~lLekLl~D 736 (815)
T PLN00142 715 DP-YHGDEAANKIADFFEKCKED 736 (815)
T ss_pred CC-CCHHHHHHHHHHHHHHhcCC
Confidence 87 6788888887654 467
No 89
>PLN02316 synthase/transferase
Probab=98.90 E-value=5.4e-07 Score=94.82 Aligned_cols=118 Identities=7% Similarity=-0.007 Sum_probs=69.1
Q ss_pred cCCCceeeecchh---hhhcccccccccccc---c-hhhHHHhhhcCCceeecCccc--chhhH-------HHHHHhhhh
Q 046167 296 QENGYIVKWAPQK---EVLSHVAVGGFWSHC---G-WNSTLESICEGVPMICMPFFE--DQKVN-------ARYLSHVWG 359 (424)
Q Consensus 296 ~~nv~v~~~ip~~---~ll~~~~~~~~i~hg---G-~~t~~eal~~GvP~v~~P~~~--DQ~~n-------a~~~~~~~G 359 (424)
++++.+....+.. .+++.+|+ |+.-+ | .-+.+||+++|+|.|+....| |.-.. +...... +
T Consensus 899 ~~rV~f~g~~de~lah~iyaaADi--flmPS~~EP~GLvqLEAMa~GtppVvs~vGGL~DtV~d~d~~~~~~~~~g~~-~ 975 (1036)
T PLN02316 899 HDRARLCLTYDEPLSHLIYAGADF--ILVPSIFEPCGLTQLTAMRYGSIPVVRKTGGLFDTVFDVDHDKERAQAQGLE-P 975 (1036)
T ss_pred CCeEEEEecCCHHHHHHHHHhCcE--EEeCCcccCccHHHHHHHHcCCCeEEEcCCCcHhhccccccccccccccccC-C
Confidence 3567776555543 47877777 77542 2 357899999999999865533 22111 1111111 4
Q ss_pred cceecCcccchHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHh
Q 046167 360 VGLELEHELERGAVEKAVRKLTVDKEGEFLRQRAAQLKEEVELSTRKGGFSYNSLNELLDLIN 422 (424)
Q Consensus 360 ~g~~~~~~~~~~~L~~ai~~ll~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~a~~~~~~~~~ 422 (424)
.|..++. .+++.|..+|.+++.+ +.+....+++..+..+...-+-.+.++..++.++
T Consensus 976 tGflf~~-~d~~aLa~AL~raL~~-----~~~~~~~~~~~~r~~m~~dFSW~~~A~~Y~~LY~ 1032 (1036)
T PLN02316 976 NGFSFDG-ADAAGVDYALNRAISA-----WYDGRDWFNSLCKRVMEQDWSWNRPALDYMELYH 1032 (1036)
T ss_pred ceEEeCC-CCHHHHHHHHHHHHhh-----hhhhHHHHHHHHHHHHHhhCCHHHHHHHHHHHHH
Confidence 6777776 7899999999999976 2222333333333332222455556666665554
No 90
>cd03792 GT1_Trehalose_phosphorylase Trehalose phosphorylase (TP) reversibly catalyzes trehalose synthesis and degradation from alpha-glucose-1-phosphate (alpha-Glc-1-P) and glucose. The catalyzing activity includes the phosphorolysis of trehalose, which produce alpha-Glc-1-P and glucose, and the subsequent synthesis of trehalose. This family is most closely related to the GT1 family of glycosyltransferases.
Probab=98.89 E-value=3.8e-07 Score=88.07 Aligned_cols=111 Identities=17% Similarity=0.155 Sum_probs=71.1
Q ss_pred cCCCceeeec--chh---hhhcccccccccccc---c-hhhHHHhhhcCCceeecCcccchhhHHHHHHhhhhcceecCc
Q 046167 296 QENGYIVKWA--PQK---EVLSHVAVGGFWSHC---G-WNSTLESICEGVPMICMPFFEDQKVNARYLSHVWGVGLELEH 366 (424)
Q Consensus 296 ~~nv~v~~~i--p~~---~ll~~~~~~~~i~hg---G-~~t~~eal~~GvP~v~~P~~~DQ~~na~~~~~~~G~g~~~~~ 366 (424)
.+++.+.++. ++. .+++.+++ ++.-+ | ..++.||+++|+|+|+.... .....+..+ ..|...+
T Consensus 251 ~~~v~~~~~~~~~~~~~~~~~~~ad~--~v~~s~~Eg~g~~~lEA~a~G~Pvv~s~~~----~~~~~i~~~-~~g~~~~- 322 (372)
T cd03792 251 DPDIHVLTLPPVSDLEVNALQRASTV--VLQKSIREGFGLTVTEALWKGKPVIAGPVG----GIPLQIEDG-ETGFLVD- 322 (372)
T ss_pred CCCeEEEecCCCCHHHHHHHHHhCeE--EEeCCCccCCCHHHHHHHHcCCCEEEcCCC----CchhhcccC-CceEEeC-
Confidence 3577777776 433 37777777 77543 2 45899999999999997543 334456663 6676554
Q ss_pred ccchHHHHHHHHHHhcccchHHHHHHHHHHHHH-HHHHhhcCCCcHHHHHHHHHHHhc
Q 046167 367 ELERGAVEKAVRKLTVDKEGEFLRQRAAQLKEE-VELSTRKGGFSYNSLNELLDLINK 423 (424)
Q Consensus 367 ~~~~~~L~~ai~~ll~~~~~~~~~~~a~~l~~~-~~~~~~~~g~~~~a~~~~~~~~~~ 423 (424)
+.+.++.+|.++++| +..++...+-+.+ +.+. -+....++++++.+++
T Consensus 323 --~~~~~a~~i~~ll~~---~~~~~~~~~~a~~~~~~~----~s~~~~~~~~~~~~~~ 371 (372)
T cd03792 323 --TVEEAAVRILYLLRD---PELRRKMGANAREHVREN----FLITRHLKDYLYLISK 371 (372)
T ss_pred --CcHHHHHHHHHHHcC---HHHHHHHHHHHHHHHHHH----cCHHHHHHHHHHHHHh
Confidence 467788899999988 3333332222222 2222 5566788888887765
No 91
>cd03809 GT1_mtfB_like This family is most closely related to the GT1 family of glycosyltransferases. mtfB (mannosyltransferase B) in E. coli has been shown to direct the growth of the O9-specific polysaccharide chain. It transfers two mannoses into the position 3 of the previously synthesized polysaccharide.
Probab=98.85 E-value=9.3e-07 Score=84.43 Aligned_cols=90 Identities=17% Similarity=0.188 Sum_probs=60.4
Q ss_pred hcCCCceeeecchhh---hhccccccccccc----cchhhHHHhhhcCCceeecCcccchhhHHHHHHhhhhcceecCcc
Q 046167 295 VQENGYIVKWAPQKE---VLSHVAVGGFWSH----CGWNSTLESICEGVPMICMPFFEDQKVNARYLSHVWGVGLELEHE 367 (424)
Q Consensus 295 ~~~nv~v~~~ip~~~---ll~~~~~~~~i~h----gG~~t~~eal~~GvP~v~~P~~~DQ~~na~~~~~~~G~g~~~~~~ 367 (424)
..+|+.+.+++|+.+ ++..+++ ++.- |...++.||+++|+|+|+.... .....+.+ .|..+..
T Consensus 251 ~~~~v~~~g~~~~~~~~~~~~~~d~--~l~ps~~e~~~~~~~Ea~a~G~pvI~~~~~----~~~e~~~~---~~~~~~~- 320 (365)
T cd03809 251 LGDRVRFLGYVSDEELAALYRGARA--FVFPSLYEGFGLPVLEAMACGTPVIASNIS----SLPEVAGD---AALYFDP- 320 (365)
T ss_pred CCCeEEECCCCChhHHHHHHhhhhh--hcccchhccCCCCHHHHhcCCCcEEecCCC----CccceecC---ceeeeCC-
Confidence 457888889998764 7777777 5533 3356899999999999986542 22222323 2334444
Q ss_pred cchHHHHHHHHHHhcccchHHHHHHHHHHH
Q 046167 368 LERGAVEKAVRKLTVDKEGEFLRQRAAQLK 397 (424)
Q Consensus 368 ~~~~~L~~ai~~ll~~~~~~~~~~~a~~l~ 397 (424)
.+.+++.++|.++++| +..+++..+-+
T Consensus 321 ~~~~~~~~~i~~l~~~---~~~~~~~~~~~ 347 (365)
T cd03809 321 LDPEALAAAIERLLED---PALREELRERG 347 (365)
T ss_pred CCHHHHHHHHHHHhcC---HHHHHHHHHHH
Confidence 4899999999999998 45444444433
No 92
>PLN02846 digalactosyldiacylglycerol synthase
Probab=98.84 E-value=3.4e-06 Score=82.31 Aligned_cols=72 Identities=13% Similarity=0.145 Sum_probs=51.6
Q ss_pred eeeecchhhhhccccccccccccc----hhhHHHhhhcCCceeecCcccchhhHHHHHHhhhhcceecCcccchHHHHHH
Q 046167 301 IVKWAPQKEVLSHVAVGGFWSHCG----WNSTLESICEGVPMICMPFFEDQKVNARYLSHVWGVGLELEHELERGAVEKA 376 (424)
Q Consensus 301 v~~~ip~~~ll~~~~~~~~i~hgG----~~t~~eal~~GvP~v~~P~~~DQ~~na~~~~~~~G~g~~~~~~~~~~~L~~a 376 (424)
+.++.+..+++...++ ||.-+- ..++.||+++|+|+|+.-.. .+ ..+.+. +-|... -+.+++.++
T Consensus 288 f~G~~~~~~~~~~~Dv--Fv~pS~~Et~g~v~lEAmA~G~PVVa~~~~----~~-~~v~~~-~ng~~~---~~~~~~a~a 356 (462)
T PLN02846 288 YPGRDHADPLFHDYKV--FLNPSTTDVVCTTTAEALAMGKIVVCANHP----SN-EFFKQF-PNCRTY---DDGKGFVRA 356 (462)
T ss_pred ECCCCCHHHHHHhCCE--EEECCCcccchHHHHHHHHcCCcEEEecCC----Cc-ceeecC-CceEec---CCHHHHHHH
Confidence 3466666678877776 887643 56889999999999998443 22 444443 555444 278899999
Q ss_pred HHHHhcc
Q 046167 377 VRKLTVD 383 (424)
Q Consensus 377 i~~ll~~ 383 (424)
+.++|.+
T Consensus 357 i~~~l~~ 363 (462)
T PLN02846 357 TLKALAE 363 (462)
T ss_pred HHHHHcc
Confidence 9999986
No 93
>cd03812 GT1_CapH_like This family is most closely related to the GT1 family of glycosyltransferases. capH in Staphylococcus aureus has been shown to be required for the biosynthesis of the type 1 capsular polysaccharide (CP1).
Probab=98.84 E-value=7.3e-07 Score=85.26 Aligned_cols=136 Identities=13% Similarity=0.074 Sum_probs=77.3
Q ss_pred CCeEEEEEeCCccc-CCHHHHHHHHHHHHhCCCCeEEEEcCCCCCCCcccccCchhHH-HHhcCCCceeeecch-hhhhc
Q 046167 236 PKSVIYVSLGSVAS-MDKKELEEMAWGLVNSKQPFLWVIRPRTNNAPEGIELLPKVLA-EDVQENGYIVKWAPQ-KEVLS 312 (424)
Q Consensus 236 ~~~~I~vs~Gs~~~-~~~~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~-~~~~~nv~v~~~ip~-~~ll~ 312 (424)
+++.+++..|+... -..+.+...+..+.+...++.+.+-|++... ..+..... ....+++.+.++..+ ..++.
T Consensus 190 ~~~~~i~~vGr~~~~Kg~~~li~a~~~l~~~~~~~~l~ivG~g~~~----~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~ 265 (358)
T cd03812 190 EDKFVIGHVGRFSEQKNHEFLIEIFAELLKKNPNAKLLLVGDGELE----EEIKKKVKELGLEDKVIFLGVRNDVPELLQ 265 (358)
T ss_pred CCCEEEEEEeccccccChHHHHHHHHHHHHhCCCeEEEEEeCCchH----HHHHHHHHhcCCCCcEEEecccCCHHHHHH
Confidence 34466777787763 1233333333444333334343433321110 11111111 123467888887544 35888
Q ss_pred cccccccccc----cchhhHHHhhhcCCceeecCcccchhhHHHHHHhhhhcceecCcccchHHHHHHHHHHhccc
Q 046167 313 HVAVGGFWSH----CGWNSTLESICEGVPMICMPFFEDQKVNARYLSHVWGVGLELEHELERGAVEKAVRKLTVDK 384 (424)
Q Consensus 313 ~~~~~~~i~h----gG~~t~~eal~~GvP~v~~P~~~DQ~~na~~~~~~~G~g~~~~~~~~~~~L~~ai~~ll~~~ 384 (424)
.+++ +|+- |-..+++||+++|+|+|+....+ ....+.. +.+..... -++++++++|.++++|+
T Consensus 266 ~adi--~v~ps~~E~~~~~~lEAma~G~PvI~s~~~~----~~~~i~~--~~~~~~~~-~~~~~~a~~i~~l~~~~ 332 (358)
T cd03812 266 AMDV--FLFPSLYEGLPLVLIEAQASGLPCILSDTIT----KEVDLTD--LVKFLSLD-ESPEIWAEEILKLKSED 332 (358)
T ss_pred hcCE--EEecccccCCCHHHHHHHHhCCCEEEEcCCc----hhhhhcc--CccEEeCC-CCHHHHHHHHHHHHhCc
Confidence 8887 5543 34678999999999999875433 3344444 44444443 46899999999999994
No 94
>cd03806 GT1_ALG11_like This family is most closely related to the GT1 family of glycosyltransferases. ALG11 in yeast is involved in adding the final 1,2-linked Man to the Man5GlcNAc2-PP-Dol synthesized on the cytosolic face of the ER. The deletion analysis of ALG11 was shown to block the early steps of core biosynthesis that takes place on the cytoplasmic face of the ER and lead to a defect in the assembly of lipid-linked oligosaccharides.
Probab=98.83 E-value=2.5e-06 Score=83.59 Aligned_cols=81 Identities=14% Similarity=0.035 Sum_probs=56.8
Q ss_pred hcCCCceeeecchhh---hhcccccccccccc---c-hhhHHHhhhcCCceeecCcccchhhHHHHHH---hhhhcceec
Q 046167 295 VQENGYIVKWAPQKE---VLSHVAVGGFWSHC---G-WNSTLESICEGVPMICMPFFEDQKVNARYLS---HVWGVGLEL 364 (424)
Q Consensus 295 ~~~nv~v~~~ip~~~---ll~~~~~~~~i~hg---G-~~t~~eal~~GvP~v~~P~~~DQ~~na~~~~---~~~G~g~~~ 364 (424)
+.++|.+.+++|+.+ +|..+++ +|+-. | .-++.||+++|+|.|+.-..+.- ...++ .+ ..|...
T Consensus 303 l~~~V~f~g~v~~~~l~~~l~~adv--~v~~s~~E~Fgi~~lEAMa~G~pvIa~~~ggp~---~~iv~~~~~g-~~G~l~ 376 (419)
T cd03806 303 LEDKVEFVVNAPFEELLEELSTASI--GLHTMWNEHFGIGVVEYMAAGLIPLAHASGGPL---LDIVVPWDGG-PTGFLA 376 (419)
T ss_pred CCCeEEEecCCCHHHHHHHHHhCeE--EEECCccCCcccHHHHHHHcCCcEEEEcCCCCc---hheeeccCCC-CceEEe
Confidence 347899999998765 7877777 55432 2 34779999999999986443311 12232 43 567654
Q ss_pred CcccchHHHHHHHHHHhccc
Q 046167 365 EHELERGAVEKAVRKLTVDK 384 (424)
Q Consensus 365 ~~~~~~~~L~~ai~~ll~~~ 384 (424)
. ++++++++|.++++++
T Consensus 377 ~---d~~~la~ai~~ll~~~ 393 (419)
T cd03806 377 S---TAEEYAEAIEKILSLS 393 (419)
T ss_pred C---CHHHHHHHHHHHHhCC
Confidence 2 8999999999999874
No 95
>PRK00654 glgA glycogen synthase; Provisional
Probab=98.82 E-value=8.2e-07 Score=88.28 Aligned_cols=132 Identities=10% Similarity=0.090 Sum_probs=74.2
Q ss_pred CeEEEEEeCCcccCCHHHHHHHHHHHHh---CCCCeEEEEcCCCCCCCcccccCchhH---HHHhcCCCce-eeecchh-
Q 046167 237 KSVIYVSLGSVASMDKKELEEMAWGLVN---SKQPFLWVIRPRTNNAPEGIELLPKVL---AEDVQENGYI-VKWAPQK- 308 (424)
Q Consensus 237 ~~~I~vs~Gs~~~~~~~~~~~~~~a~~~---~~~~~i~~~~~~~~~~~~~~~~l~~~~---~~~~~~nv~v-~~~ip~~- 308 (424)
+..+++..|.... .+-++.+++++.+ .+.+++++-.+. ....+.+ .++.++++.+ .++-...
T Consensus 281 ~~~~i~~vGRl~~--~KG~~~li~a~~~l~~~~~~lvivG~g~--------~~~~~~l~~l~~~~~~~v~~~~g~~~~~~ 350 (466)
T PRK00654 281 DAPLFAMVSRLTE--QKGLDLVLEALPELLEQGGQLVLLGTGD--------PELEEAFRALAARYPGKVGVQIGYDEALA 350 (466)
T ss_pred CCcEEEEeecccc--ccChHHHHHHHHHHHhcCCEEEEEecCc--------HHHHHHHHHHHHHCCCcEEEEEeCCHHHH
Confidence 3456677788773 3444445555543 355555442111 0111222 2334456554 3553221
Q ss_pred -hhhccccccccccc---cch-hhHHHhhhcCCceeecCccc--chhhHHHHHHhhhhcceecCcccchHHHHHHHHHHh
Q 046167 309 -EVLSHVAVGGFWSH---CGW-NSTLESICEGVPMICMPFFE--DQKVNARYLSHVWGVGLELEHELERGAVEKAVRKLT 381 (424)
Q Consensus 309 -~ll~~~~~~~~i~h---gG~-~t~~eal~~GvP~v~~P~~~--DQ~~na~~~~~~~G~g~~~~~~~~~~~L~~ai~~ll 381 (424)
.+++.+++ +|.- -|. .+.+||+++|+|.|+....+ |.-.+...-... +.|..++. .++++|.++|.+++
T Consensus 351 ~~~~~~aDv--~v~PS~~E~~gl~~lEAma~G~p~V~~~~gG~~e~v~~~~~~~~~-~~G~lv~~-~d~~~la~~i~~~l 426 (466)
T PRK00654 351 HRIYAGADM--FLMPSRFEPCGLTQLYALRYGTLPIVRRTGGLADTVIDYNPEDGE-ATGFVFDD-FNAEDLLRALRRAL 426 (466)
T ss_pred HHHHhhCCE--EEeCCCCCCchHHHHHHHHCCCCEEEeCCCCccceeecCCCCCCC-CceEEeCC-CCHHHHHHHHHHHH
Confidence 47777777 6643 244 47899999999999875432 211111011232 77888876 68999999999988
Q ss_pred c
Q 046167 382 V 382 (424)
Q Consensus 382 ~ 382 (424)
+
T Consensus 427 ~ 427 (466)
T PRK00654 427 E 427 (466)
T ss_pred H
Confidence 6
No 96
>TIGR03087 stp1 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=98.80 E-value=1.4e-06 Score=84.84 Aligned_cols=110 Identities=20% Similarity=0.135 Sum_probs=71.3
Q ss_pred cCCCceeeecchh-hhhccccccccc--cc--cch-hhHHHhhhcCCceeecCcccchhhHHHHHHhhhhcceecCcccc
Q 046167 296 QENGYIVKWAPQK-EVLSHVAVGGFW--SH--CGW-NSTLESICEGVPMICMPFFEDQKVNARYLSHVWGVGLELEHELE 369 (424)
Q Consensus 296 ~~nv~v~~~ip~~-~ll~~~~~~~~i--~h--gG~-~t~~eal~~GvP~v~~P~~~DQ~~na~~~~~~~G~g~~~~~~~~ 369 (424)
.++|.+.+++++. .++..+++ +| ++ .|. +.+.||+++|+|+|+.+...+.. .+.. |.|..+. .+
T Consensus 279 ~~~V~~~G~v~~~~~~~~~adv--~v~Ps~~~eG~~~~~lEAma~G~PVV~t~~~~~~i-----~~~~-~~g~lv~--~~ 348 (397)
T TIGR03087 279 LPGVTVTGSVADVRPYLAHAAV--AVAPLRIARGIQNKVLEAMAMAKPVVASPEAAEGI-----DALP-GAELLVA--AD 348 (397)
T ss_pred CCCeEEeeecCCHHHHHHhCCE--EEecccccCCcccHHHHHHHcCCCEEecCcccccc-----cccC-CcceEeC--CC
Confidence 3678889999864 48878887 55 32 344 46999999999999987643221 1232 6676665 48
Q ss_pred hHHHHHHHHHHhcccc-hHHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHh
Q 046167 370 RGAVEKAVRKLTVDKE-GEFLRQRAAQLKEEVELSTRKGGFSYNSLNELLDLIN 422 (424)
Q Consensus 370 ~~~L~~ai~~ll~~~~-~~~~~~~a~~l~~~~~~~~~~~g~~~~a~~~~~~~~~ 422 (424)
+++++++|.++++|++ ...+.+++++. +.+. -+-...++.+.+.++
T Consensus 349 ~~~la~ai~~ll~~~~~~~~~~~~ar~~---v~~~----fsw~~~~~~~~~~l~ 395 (397)
T TIGR03087 349 PADFAAAILALLANPAEREELGQAARRR---VLQH----YHWPRNLARLDALLE 395 (397)
T ss_pred HHHHHHHHHHHHcCHHHHHHHHHHHHHH---HHHh----CCHHHHHHHHHHHhc
Confidence 9999999999999832 12233333222 2222 455566666666554
No 97
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.80 E-value=7.9e-06 Score=83.88 Aligned_cols=113 Identities=14% Similarity=0.076 Sum_probs=74.7
Q ss_pred cCCCceeeecchh-hhhcccccccccc---ccc-hhhHHHhhhcCCceeecCcccchhhHHHHHHhhhhcceecCc-ccc
Q 046167 296 QENGYIVKWAPQK-EVLSHVAVGGFWS---HCG-WNSTLESICEGVPMICMPFFEDQKVNARYLSHVWGVGLELEH-ELE 369 (424)
Q Consensus 296 ~~nv~v~~~ip~~-~ll~~~~~~~~i~---hgG-~~t~~eal~~GvP~v~~P~~~DQ~~na~~~~~~~G~g~~~~~-~~~ 369 (424)
.++|.+.+|.++. .++..+++ +|. +.| .+++.||+++|+|+|+... ......+.+. ..|..++. ..+
T Consensus 573 ~~~V~flG~~~dv~~ll~aaDv--~VlpS~~Egfp~vlLEAMA~G~PVVat~~----gG~~EiV~dg-~~GlLv~~~d~~ 645 (694)
T PRK15179 573 GERILFTGLSRRVGYWLTQFNA--FLLLSRFEGLPNVLIEAQFSGVPVVTTLA----GGAGEAVQEG-VTGLTLPADTVT 645 (694)
T ss_pred CCcEEEcCCcchHHHHHHhcCE--EEeccccccchHHHHHHHHcCCeEEEECC----CChHHHccCC-CCEEEeCCCCCC
Confidence 3788888998754 48877887 554 344 5788999999999999854 3455667774 67888876 556
Q ss_pred hHHHHHHHHHHhcccc-hHHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHh
Q 046167 370 RGAVEKAVRKLTVDKE-GEFLRQRAAQLKEEVELSTRKGGFSYNSLNELLDLIN 422 (424)
Q Consensus 370 ~~~L~~ai~~ll~~~~-~~~~~~~a~~l~~~~~~~~~~~g~~~~a~~~~~~~~~ 422 (424)
++++.+++.+++.+.. .+.+++++++.. ++. -+....++.+++.++
T Consensus 646 ~~~La~aL~~ll~~l~~~~~l~~~ar~~a---~~~----FS~~~~~~~~~~lY~ 692 (694)
T PRK15179 646 APDVAEALARIHDMCAADPGIARKAADWA---SAR----FSLNQMIASTVRCYQ 692 (694)
T ss_pred hHHHHHHHHHHHhChhccHHHHHHHHHHH---HHh----CCHHHHHHHHHHHhC
Confidence 6677777766654311 155666554433 222 455566677766654
No 98
>cd03804 GT1_wbaZ_like This family is most closely related to the GT1 family of glycosyltransferases. wbaZ in Salmonella enterica has been shown to possess the mannosyl transferase activity. The members of this family are found in certain bacteria and Archaea.
Probab=98.79 E-value=6.7e-07 Score=85.53 Aligned_cols=127 Identities=13% Similarity=0.112 Sum_probs=87.8
Q ss_pred EEEEeCCcccCCHHHHHHHHHHHHhCCCCeEEEEcCCCCCCCcccccCchhHHHHhcCCCceeeecchhh---hhccccc
Q 046167 240 IYVSLGSVASMDKKELEEMAWGLVNSKQPFLWVIRPRTNNAPEGIELLPKVLAEDVQENGYIVKWAPQKE---VLSHVAV 316 (424)
Q Consensus 240 I~vs~Gs~~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~nv~v~~~ip~~~---ll~~~~~ 316 (424)
.++..|+.. +.+.++.+++++++++.+++++-.+. ..+.+.+...+||.+.+++|+.+ +++.+++
T Consensus 197 ~il~~G~~~--~~K~~~~li~a~~~~~~~l~ivG~g~----------~~~~l~~~~~~~V~~~g~~~~~~~~~~~~~ad~ 264 (351)
T cd03804 197 YYLSVGRLV--PYKRIDLAIEAFNKLGKRLVVIGDGP----------ELDRLRAKAGPNVTFLGRVSDEELRDLYARARA 264 (351)
T ss_pred EEEEEEcCc--cccChHHHHHHHHHCCCcEEEEECCh----------hHHHHHhhcCCCEEEecCCCHHHHHHHHHhCCE
Confidence 345567776 44556677888888887765444221 22334345668999999999854 7878887
Q ss_pred cccccccch-hhHHHhhhcCCceeecCcccchhhHHHHHHhhhhcceecCcccchHHHHHHHHHHhccc
Q 046167 317 GGFWSHCGW-NSTLESICEGVPMICMPFFEDQKVNARYLSHVWGVGLELEHELERGAVEKAVRKLTVDK 384 (424)
Q Consensus 317 ~~~i~hgG~-~t~~eal~~GvP~v~~P~~~DQ~~na~~~~~~~G~g~~~~~~~~~~~L~~ai~~ll~~~ 384 (424)
-++-+.-|. .++.||+++|+|+|+....+ ....+++. +.|..++. -+++.++++|.++++|+
T Consensus 265 ~v~ps~e~~g~~~~Eama~G~Pvi~~~~~~----~~e~i~~~-~~G~~~~~-~~~~~la~~i~~l~~~~ 327 (351)
T cd03804 265 FLFPAEEDFGIVPVEAMASGTPVIAYGKGG----ALETVIDG-VTGILFEE-QTVESLAAAVERFEKNE 327 (351)
T ss_pred EEECCcCCCCchHHHHHHcCCCEEEeCCCC----CcceeeCC-CCEEEeCC-CCHHHHHHHHHHHHhCc
Confidence 333334343 45689999999999985533 44556664 78888876 58899999999999984
No 99
>TIGR02095 glgA glycogen/starch synthases, ADP-glucose type. This family consists of glycogen (or starch) synthases that use ADP-glucose (EC 2.4.1.21), rather than UDP-glucose (EC 2.4.1.11) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.
Probab=98.78 E-value=1.6e-06 Score=86.41 Aligned_cols=160 Identities=14% Similarity=0.074 Sum_probs=90.7
Q ss_pred CeEEEEEeCCcccCCHHHHHHHHHHHHh---CCCCeEEEEcCCCCCCCcccccCchhH---HHHhcCCCceeeecchh--
Q 046167 237 KSVIYVSLGSVASMDKKELEEMAWGLVN---SKQPFLWVIRPRTNNAPEGIELLPKVL---AEDVQENGYIVKWAPQK-- 308 (424)
Q Consensus 237 ~~~I~vs~Gs~~~~~~~~~~~~~~a~~~---~~~~~i~~~~~~~~~~~~~~~~l~~~~---~~~~~~nv~v~~~ip~~-- 308 (424)
+..+++..|+... .+-++.+++++.+ .+.+++++- .+. ....+.+ .++.+.++.+....+..
T Consensus 290 ~~~~i~~vGrl~~--~Kg~~~li~a~~~l~~~~~~lvi~G-~g~-------~~~~~~l~~~~~~~~~~v~~~~~~~~~~~ 359 (473)
T TIGR02095 290 DVPLFGVISRLTQ--QKGVDLLLAALPELLELGGQLVVLG-TGD-------PELEEALRELAERYPGNVRVIIGYDEALA 359 (473)
T ss_pred CCCEEEEEecCcc--ccChHHHHHHHHHHHHcCcEEEEEC-CCC-------HHHHHHHHHHHHHCCCcEEEEEcCCHHHH
Confidence 3456666788774 3334444444433 344544332 210 0112222 22344666666555553
Q ss_pred -hhhcccccccccccc---ch-hhHHHhhhcCCceeecCcccchhhHHHHHHhhh------hcceecCcccchHHHHHHH
Q 046167 309 -EVLSHVAVGGFWSHC---GW-NSTLESICEGVPMICMPFFEDQKVNARYLSHVW------GVGLELEHELERGAVEKAV 377 (424)
Q Consensus 309 -~ll~~~~~~~~i~hg---G~-~t~~eal~~GvP~v~~P~~~DQ~~na~~~~~~~------G~g~~~~~~~~~~~L~~ai 377 (424)
.+++.+++ ++.-. |. .+.+||+++|+|.|+....+ ....+.+ . +.|..++. .++++|.++|
T Consensus 360 ~~~~~~aDv--~l~pS~~E~~gl~~lEAma~G~pvI~s~~gg----~~e~v~~-~~~~~~~~~G~l~~~-~d~~~la~~i 431 (473)
T TIGR02095 360 HLIYAGADF--ILMPSRFEPCGLTQLYAMRYGTVPIVRRTGG----LADTVVD-GDPEAESGTGFLFEE-YDPGALLAAL 431 (473)
T ss_pred HHHHHhCCE--EEeCCCcCCcHHHHHHHHHCCCCeEEccCCC----ccceEec-CCCCCCCCceEEeCC-CCHHHHHHHH
Confidence 37777777 66432 33 37799999999999875533 2222222 2 67877776 6899999999
Q ss_pred HHHhc----ccchHHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHhc
Q 046167 378 RKLTV----DKEGEFLRQRAAQLKEEVELSTRKGGFSYNSLNELLDLINK 423 (424)
Q Consensus 378 ~~ll~----~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~a~~~~~~~~~~ 423 (424)
.+++. | +..+ +++++.... +.-+-.+.++++++.+++
T Consensus 432 ~~~l~~~~~~---~~~~---~~~~~~~~~---~~fsw~~~a~~~~~~Y~~ 472 (473)
T TIGR02095 432 SRALRLYRQD---PSLW---EALQKNAMS---QDFSWDKSAKQYVELYRS 472 (473)
T ss_pred HHHHHHHhcC---HHHH---HHHHHHHhc---cCCCcHHHHHHHHHHHHh
Confidence 99987 5 2222 223322221 124666778888877765
No 100
>TIGR03568 NeuC_NnaA UDP-N-acetyl-D-glucosamine 2-epimerase, UDP-hydrolysing. This family of enzymes catalyzes the combined epimerization and UDP-hydrolysis of UDP-N-acetylglucosamine to N-acetylmannosamine. This is in contrast to the related enzyme WecB (TIGR00236) which retains the UDP moiety. NeuC acts in concert with NeuA and NeuB to synthesize CMP-N5-acetyl-neuraminate.
Probab=98.73 E-value=1.2e-06 Score=84.00 Aligned_cols=317 Identities=14% Similarity=0.125 Sum_probs=157.6
Q ss_pred ceEEEEcCCCccChHHHHHHHHHHHhC-CCeEEEEeCCCCCCC-------CCCCCCceEEeCCCCCCCCccccccHHHHH
Q 046167 9 RRVVLVPSPHQGHINPMLQLGTILHSK-GFSITVVHTQFNSPN-------PSNHPEFEFQSIPDGLMDVNISARNLVDSI 80 (424)
Q Consensus 9 ~ril~~~~~~~GH~~p~~~la~~L~~~-Gh~V~~~~~~~~~~~-------~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 80 (424)
+||+++. |+.-.+.-+.++.++|++. +.++.++.+.-.... .....++.... ...+.-......+....+
T Consensus 1 ~ki~~v~-GtRpe~iklapv~~~l~~~~~~~~~lv~tGqH~~~~~g~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 78 (365)
T TIGR03568 1 KKICVVT-GTRADYGLLRPLLKALQDDPDLELQLIVTGMHLSPEYGNTVNEIEKDGFDIDE-KIEILLDSDSNAGMAKSM 78 (365)
T ss_pred CeEEEEE-ecChhHHHHHHHHHHHhcCCCCcEEEEEeCCCCChhhccHHHHHHHcCCCCCC-ccccccCCCCCCCHHHHH
Confidence 3666655 4777888888889999884 788888887522211 00002221110 000000001122333333
Q ss_pred HHHHHhchhHHHHHHHHHHhhcCCCCCceEEEecC--cc-chHHHHHHHhCCceEEEecchHHHHHHHHhhhcccccCCC
Q 046167 81 LLLNENCREPFRNWLVQMIKEQQPGDEIVCIIYDE--VM-YFAEASASQLNVQSIILRTSGAVTVVARLVLFQLKEEGYN 157 (424)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~pDlvi~d~--~~-~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (424)
.... ..+.+++++. +||+||+-. .. .++..+|..++||++-+.-.-... + .
T Consensus 79 ~~~~----~~~~~~~~~~--------~Pd~vlv~GD~~~~la~alaA~~~~IPv~HveaG~rs~-------------~-~ 132 (365)
T TIGR03568 79 GLTI----IGFSDAFERL--------KPDLVVVLGDRFEMLAAAIAAALLNIPIAHIHGGEVTE-------------G-A 132 (365)
T ss_pred HHHH----HHHHHHHHHh--------CCCEEEEeCCchHHHHHHHHHHHhCCcEEEEECCccCC-------------C-C
Confidence 2222 2333455555 899999854 22 577889999999999654431100 0 0
Q ss_pred CCChhHHHHHHHhhhccCCceEEecChhhhhHHHHHHHHhcc-CCCeeeecccccCCCCCCCCCcccccccccccccCCC
Q 046167 158 PLKESYVQLINNAYSARTSSAVISNTIYCLEESVLSQLQQYF-KVPNFPIGPLHKFAPSSNGSLLKEDTSCISWLNNQSP 236 (424)
Q Consensus 158 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~vGp~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 236 (424)
| .....+.. .+.++..+.++.. .. -...+... +.+++.+|....+.-.... ......+.+.+.-..+
T Consensus 133 ~-eE~~r~~i-----~~la~l~f~~t~~-~~---~~L~~eg~~~~~i~~tG~~~iD~l~~~~--~~~~~~~~~~lgl~~~ 200 (365)
T TIGR03568 133 I-DESIRHAI-----TKLSHLHFVATEE-YR---QRVIQMGEDPDRVFNVGSPGLDNILSLD--LLSKEELEEKLGIDLD 200 (365)
T ss_pred c-hHHHHHHH-----HHHHhhccCCCHH-HH---HHHHHcCCCCCcEEEECCcHHHHHHhhh--ccCHHHHHHHhCCCCC
Confidence 0 00000000 0111122222211 00 01111112 1236666653322110000 0011122222221123
Q ss_pred CeEEEEEeCCcc--c-CCHHHHHHHHHHHHhCCCCeEEEEcCCCCCCCcccccCchhHHHHh--cCCCceeeecchhh--
Q 046167 237 KSVIYVSLGSVA--S-MDKKELEEMAWGLVNSKQPFLWVIRPRTNNAPEGIELLPKVLAEDV--QENGYIVKWAPQKE-- 309 (424)
Q Consensus 237 ~~~I~vs~Gs~~--~-~~~~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~--~~nv~v~~~ip~~~-- 309 (424)
++.|+|++=... . ...+.+..+++++.+.+.+++++...... +. ....+.+.+.. .+|+.+.+.+++.+
T Consensus 201 ~~~vlvt~Hp~~~~~~~~~~~l~~li~~L~~~~~~~~vi~P~~~p-~~---~~i~~~i~~~~~~~~~v~l~~~l~~~~~l 276 (365)
T TIGR03568 201 KPYALVTFHPVTLEKESAEEQIKELLKALDELNKNYIFTYPNADA-GS---RIINEAIEEYVNEHPNFRLFKSLGQERYL 276 (365)
T ss_pred CCEEEEEeCCCcccccCchHHHHHHHHHHHHhccCCEEEEeCCCC-Cc---hHHHHHHHHHhcCCCCEEEECCCChHHHH
Confidence 468778775433 2 45678889999998877666655422211 10 11122222222 36788887766554
Q ss_pred -hhccccccccccccchhhHHHhhhcCCceeecCcccchhhHHHHHHhhhhccee-cCcccchHHHHHHHHHHhc
Q 046167 310 -VLSHVAVGGFWSHCGWNSTLESICEGVPMICMPFFEDQKVNARYLSHVWGVGLE-LEHELERGAVEKAVRKLTV 382 (424)
Q Consensus 310 -ll~~~~~~~~i~hgG~~t~~eal~~GvP~v~~P~~~DQ~~na~~~~~~~G~g~~-~~~~~~~~~L~~ai~~ll~ 382 (424)
+++++++ +|+.++.+. .||.+.|+|.|.+- +.+ .-++. |..+. +. .++++|.++++++++
T Consensus 277 ~Ll~~a~~--vitdSSggi-~EA~~lg~Pvv~l~---~R~---e~~~~--g~nvl~vg--~~~~~I~~a~~~~~~ 338 (365)
T TIGR03568 277 SLLKNADA--VIGNSSSGI-IEAPSFGVPTINIG---TRQ---KGRLR--ADSVIDVD--PDKEEIVKAIEKLLD 338 (365)
T ss_pred HHHHhCCE--EEEcChhHH-HhhhhcCCCEEeec---CCc---hhhhh--cCeEEEeC--CCHHHHHHHHHHHhC
Confidence 8878887 998876555 99999999999873 211 11122 33322 32 589999999999654
No 101
>PRK01021 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=98.72 E-value=8.5e-06 Score=80.77 Aligned_cols=345 Identities=14% Similarity=0.129 Sum_probs=175.5
Q ss_pred ceEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCCCCCCCCCCCCCceEEeCCCCCCCCccccccHHHHHHHHHHhch
Q 046167 9 RRVVLVPSPHQGHINPMLQLGTILHSKGFSITVVHTQFNSPNPSNHPEFEFQSIPDGLMDVNISARNLVDSILLLNENCR 88 (424)
Q Consensus 9 ~ril~~~~~~~GH~~p~~~la~~L~~~Gh~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (424)
.||+++++=..|++.- -.|.++|+++.=++.+.+-....... .|++.. .+.+...--++.+.+..+. ...
T Consensus 227 ~kIfI~AGE~SGDlhg-A~Li~aLk~~~P~i~~~GvGG~~M~a---aG~e~l-----~d~~eLsVmG~~EVL~~l~-~l~ 296 (608)
T PRK01021 227 TSCFISAGEHSGDTLG-GNLLKEIKALYPDIHCFGVGGPQMRA---EGFHPL-----FNMEEFQVSGFWEVLLALF-KLW 296 (608)
T ss_pred CeEEEEeccccHHHHH-HHHHHHHHhcCCCcEEEEEccHHHHh---CcCccc-----CChHHhhhhhHHHHHHHHH-HHH
Confidence 5888888878888664 45778888887667777653222211 222211 1111122234555555544 344
Q ss_pred hHHHHHHHHHHhhcCCCCCceEEEe-cCcc--chHHHHHHHhCC--ceEEEecchHHHHHHHHhhhcccccCCCCCChhH
Q 046167 89 EPFRNWLVQMIKEQQPGDEIVCIIY-DEVM--YFAEASASQLNV--QSIILRTSGAVTVVARLVLFQLKEEGYNPLKESY 163 (424)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~pDlvi~-d~~~--~~~~~~A~~lgi--P~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 163 (424)
..++++.+.+.+. +||++|. |+-. .-....+++.|+ |++.+.+ |+. +.+.+.+
T Consensus 297 ~~~~~l~~~i~~~-----kPD~vIlID~PgFNlrLAK~lkk~Gi~ipviyYVs------------PqV--WAWR~~R--- 354 (608)
T PRK01021 297 YRYRKLYKTILKT-----NPRTVICIDFPDFHFLLIKKLRKRGYKGKIVHYVC------------PSI--WAWRPKR--- 354 (608)
T ss_pred HHHHHHHHHHHhc-----CCCEEEEeCCCCCCHHHHHHHHhcCCCCCEEEEEC------------ccc--eeeCcch---
Confidence 4555566666655 8998887 6422 445567788896 9876422 222 2222211
Q ss_pred HHHHHHhhhccCCceEEecChhhhhHHHHHHHHhccCCCeeeec-ccccCCCCCCCCCcccccccccccccCCCCeEEEE
Q 046167 164 VQLINNAYSARTSSAVISNTIYCLEESVLSQLQQYFKVPNFPIG-PLHKFAPSSNGSLLKEDTSCISWLNNQSPKSVIYV 242 (424)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vG-p~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~I~v 242 (424)
.+.+.+ ..+.-..+++ +|.+. +. ..+.++.+|| |+....+. .+......+.+.-.+++++|-+
T Consensus 355 ikki~k---~vD~ll~IfP----FE~~~---y~-~~gv~v~yVGHPL~d~i~~-----~~~~~~~r~~lgl~~~~~iIaL 418 (608)
T PRK01021 355 KTILEK---YLDLLLLILP----FEQNL---FK-DSPLRTVYLGHPLVETISS-----FSPNLSWKEQLHLPSDKPIVAA 418 (608)
T ss_pred HHHHHH---HhhhheecCc----cCHHH---HH-hcCCCeEEECCcHHhhccc-----CCCHHHHHHHcCCCCCCCEEEE
Confidence 111111 1112222222 33332 22 3457899999 77654321 1111112223333346679999
Q ss_pred EeCCcccCCHHHHHHHHHHHH--hC--CCCeEEEEcCCCCCCCcccccCchhHHHHhcC-C---Cceeeecchhhhhccc
Q 046167 243 SLGSVASMDKKELEEMAWGLV--NS--KQPFLWVIRPRTNNAPEGIELLPKVLAEDVQE-N---GYIVKWAPQKEVLSHV 314 (424)
Q Consensus 243 s~Gs~~~~~~~~~~~~~~a~~--~~--~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~-n---v~v~~~ip~~~ll~~~ 314 (424)
-.||....=...+..++++.+ .. +.++++..... ...+.+.+...+ + +.+..--...++++.|
T Consensus 419 LPGSR~~EI~rllPv~l~aa~~~~l~~~l~fvvp~a~~---------~~~~~i~~~~~~~~~~~~~ii~~~~~~~~m~aa 489 (608)
T PRK01021 419 FPGSRRGDILRNLTIQVQAFLASSLASTHQLLVSSANP---------KYDHLILEVLQQEGCLHSHIVPSQFRYELMREC 489 (608)
T ss_pred ECCCCHHHHHHHHHHHHHHHHHHHhccCeEEEEecCch---------hhHHHHHHHHhhcCCCCeEEecCcchHHHHHhc
Confidence 999988633455556666666 43 23443332110 111222222221 1 1222100124688777
Q ss_pred cccccccccchhhHHHhhhcCCceeecCccc-chhhHHHHHHhh-----------h--hcceecC--c-ccchHHHHHHH
Q 046167 315 AVGGFWSHCGWNSTLESICEGVPMICMPFFE-DQKVNARYLSHV-----------W--GVGLELE--H-ELERGAVEKAV 377 (424)
Q Consensus 315 ~~~~~i~hgG~~t~~eal~~GvP~v~~P~~~-DQ~~na~~~~~~-----------~--G~g~~~~--~-~~~~~~L~~ai 377 (424)
++ .+.-+| +.|+|+...|+|||++=... =-...++++.+. . .+-..+- . +.++++|.+++
T Consensus 490 D~--aLaaSG-TaTLEaAL~g~PmVV~YK~s~Lty~Iak~Lvki~i~yIsLpNIIagr~VvPEllqgQ~~~tpe~La~~l 566 (608)
T PRK01021 490 DC--ALAKCG-TIVLETALNQTPTIVTCQLRPFDTFLAKYIFKIILPAYSLPNIILGSTIFPEFIGGKKDFQPEEVAAAL 566 (608)
T ss_pred Ce--eeecCC-HHHHHHHHhCCCEEEEEecCHHHHHHHHHHHhccCCeeehhHHhcCCCcchhhcCCcccCCHHHHHHHH
Confidence 76 666555 45789999999999853221 123445555440 0 1112222 2 57899999997
Q ss_pred HHHhcccc-hHHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHH
Q 046167 378 RKLTVDKE-GEFLRQRAAQLKEEVELSTRKGGFSYNSLNELLDLI 421 (424)
Q Consensus 378 ~~ll~~~~-~~~~~~~a~~l~~~~~~~~~~~g~~~~a~~~~~~~~ 421 (424)
++|.|++ ++.+++..+++.+.+ |+...+-+|.+..+
T Consensus 567 -~lL~d~~~r~~~~~~l~~lr~~L-------g~~~~~~~~~~~~~ 603 (608)
T PRK01021 567 -DILKTSQSKEKQKDACRDLYQAM-------NESASTMKECLSLI 603 (608)
T ss_pred -HHhcCHHHHHHHHHHHHHHHHHh-------cCCCCCHHHHHHHH
Confidence 7777742 234444444444444 44445555554443
No 102
>cd03791 GT1_Glycogen_synthase_DULL1_like This family is most closely related to the GT1 family of glycosyltransferases. Glycogen synthase catalyzes the formation and elongation of the alpha-1,4-glucose backbone using ADP-glucose, the second and key step of glycogen biosynthesis. This family includes starch synthases of plants, such as DULL1 in Zea mays and glycogen synthases of various organisms.
Probab=98.72 E-value=3.9e-06 Score=83.87 Aligned_cols=166 Identities=11% Similarity=0.033 Sum_probs=88.1
Q ss_pred CeEEEEEeCCcccCCHHHHHHHHHHHH---hCCCCeEEEEcCCCCCCCcccccCchhHH---HHhcCCCceeeecchh--
Q 046167 237 KSVIYVSLGSVASMDKKELEEMAWGLV---NSKQPFLWVIRPRTNNAPEGIELLPKVLA---EDVQENGYIVKWAPQK-- 308 (424)
Q Consensus 237 ~~~I~vs~Gs~~~~~~~~~~~~~~a~~---~~~~~~i~~~~~~~~~~~~~~~~l~~~~~---~~~~~nv~v~~~ip~~-- 308 (424)
+..+++..|.... .+-+..+++++. +.+.+++++-.++ ....+.+. ++.++|+.+....++.
T Consensus 295 ~~~~i~~vGrl~~--~Kg~~~li~a~~~l~~~~~~lvi~G~g~--------~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 364 (476)
T cd03791 295 DAPLFGFVGRLTE--QKGIDLLLEALPELLELGGQLVILGSGD--------PEYEEALRELAARYPGRVAVLIGYDEALA 364 (476)
T ss_pred CCCEEEEEeeccc--cccHHHHHHHHHHHHHcCcEEEEEecCC--------HHHHHHHHHHHHhCCCcEEEEEeCCHHHH
Confidence 4456667787774 333444444443 3344544333221 11112222 2234677765434433
Q ss_pred -hhhcccccccccccc---c-hhhHHHhhhcCCceeecCccc--chhhHHHHHHhhhhcceecCcccchHHHHHHHHHHh
Q 046167 309 -EVLSHVAVGGFWSHC---G-WNSTLESICEGVPMICMPFFE--DQKVNARYLSHVWGVGLELEHELERGAVEKAVRKLT 381 (424)
Q Consensus 309 -~ll~~~~~~~~i~hg---G-~~t~~eal~~GvP~v~~P~~~--DQ~~na~~~~~~~G~g~~~~~~~~~~~L~~ai~~ll 381 (424)
.++..+++ ++.-. | ..+.+||+++|+|.|+....+ |.-.+....... |.|..++. .++++|.++|.+++
T Consensus 365 ~~~~~~aDv--~l~pS~~E~~gl~~lEAma~G~pvI~~~~gg~~e~v~~~~~~~~~-~~G~~~~~-~~~~~l~~~i~~~l 440 (476)
T cd03791 365 HLIYAGADF--FLMPSRFEPCGLTQMYAMRYGTVPIVRATGGLADTVIDYNEDTGE-GTGFVFEG-YNADALLAALRRAL 440 (476)
T ss_pred HHHHHhCCE--EECCCCCCCCcHHHHHHhhCCCCCEECcCCCccceEeCCcCCCCC-CCeEEeCC-CCHHHHHHHHHHHH
Confidence 37777777 66431 2 246799999999999875533 211111111132 58888887 68999999999998
Q ss_pred cccchHHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHh
Q 046167 382 VDKEGEFLRQRAAQLKEEVELSTRKGGFSYNSLNELLDLIN 422 (424)
Q Consensus 382 ~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~a~~~~~~~~~ 422 (424)
+... -++...+++++..+. .-+-.+.++++++.++
T Consensus 441 ~~~~---~~~~~~~~~~~~~~~---~fsw~~~a~~~~~~y~ 475 (476)
T cd03791 441 ALYR---DPEAWRKLQRNAMAQ---DFSWDRSAKEYLELYR 475 (476)
T ss_pred HHHc---CHHHHHHHHHHHhcc---CCChHHHHHHHHHHHh
Confidence 6411 122333333333322 2344566777776654
No 103
>PRK15484 lipopolysaccharide 1,2-N-acetylglucosaminetransferase; Provisional
Probab=98.69 E-value=2.9e-05 Score=75.12 Aligned_cols=116 Identities=12% Similarity=0.106 Sum_probs=77.8
Q ss_pred HhcCCCceeeecchhh---hhccccccccccc----cch-hhHHHhhhcCCceeecCcccchhhHHHHHHhhhhcceecC
Q 046167 294 DVQENGYIVKWAPQKE---VLSHVAVGGFWSH----CGW-NSTLESICEGVPMICMPFFEDQKVNARYLSHVWGVGLELE 365 (424)
Q Consensus 294 ~~~~nv~v~~~ip~~~---ll~~~~~~~~i~h----gG~-~t~~eal~~GvP~v~~P~~~DQ~~na~~~~~~~G~g~~~~ 365 (424)
..+.++.+.+++|+.+ +++.+++ +|.. .|. .++.||+++|+|+|+... ..+...+++. ..|..+.
T Consensus 254 ~l~~~v~~~G~~~~~~l~~~~~~aDv--~v~pS~~~E~f~~~~lEAma~G~PVI~s~~----gg~~Eiv~~~-~~G~~l~ 326 (380)
T PRK15484 254 RIGDRCIMLGGQPPEKMHNYYPLADL--VVVPSQVEEAFCMVAVEAMAAGKPVLASTK----GGITEFVLEG-ITGYHLA 326 (380)
T ss_pred hcCCcEEEeCCCCHHHHHHHHHhCCE--EEeCCCCccccccHHHHHHHcCCCEEEeCC----CCcHhhcccC-CceEEEe
Confidence 3456788889998654 6877887 6542 333 577899999999999755 3455666664 6787553
Q ss_pred cccchHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHhc
Q 046167 366 HELERGAVEKAVRKLTVDKEGEFLRQRAAQLKEEVELSTRKGGFSYNSLNELLDLINK 423 (424)
Q Consensus 366 ~~~~~~~L~~ai~~ll~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~a~~~~~~~~~~ 423 (424)
...++++++++|.++++| +..++..++-++...+. -+....++++++.+.+
T Consensus 327 ~~~d~~~la~~I~~ll~d---~~~~~~~~~ar~~~~~~----fsw~~~a~~~~~~l~~ 377 (380)
T PRK15484 327 EPMTSDSIISDINRTLAD---PELTQIAEQAKDFVFSK----YSWEGVTQRFEEQIHN 377 (380)
T ss_pred CCCCHHHHHHHHHHHHcC---HHHHHHHHHHHHHHHHh----CCHHHHHHHHHHHHHH
Confidence 336899999999999999 44333332222222222 5666777777777654
No 104
>PRK10125 putative glycosyl transferase; Provisional
Probab=98.63 E-value=1.2e-05 Score=78.40 Aligned_cols=154 Identities=10% Similarity=0.025 Sum_probs=84.8
Q ss_pred EEEEeCCcccCCHHHHHHHHHHHHhCCCCeEEEEcCCCCCCCcccccCchhHHHHhcCCCceeeecch----hhhhcccc
Q 046167 240 IYVSLGSVASMDKKELEEMAWGLVNSKQPFLWVIRPRTNNAPEGIELLPKVLAEDVQENGYIVKWAPQ----KEVLSHVA 315 (424)
Q Consensus 240 I~vs~Gs~~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~nv~v~~~ip~----~~ll~~~~ 315 (424)
+++..|.....+.+.+..+++++..++.++.+.+-|.+. .. ..+++...++... ..+++.++
T Consensus 243 ~il~v~~~~~~~~Kg~~~li~A~~~l~~~~~L~ivG~g~------~~--------~~~~v~~~g~~~~~~~l~~~y~~aD 308 (405)
T PRK10125 243 KIAVVAHDLRYDGKTDQQLVREMMALGDKIELHTFGKFS------PF--------TAGNVVNHGFETDKRKLMSALNQMD 308 (405)
T ss_pred EEEEEEeccccCCccHHHHHHHHHhCCCCeEEEEEcCCC------cc--------cccceEEecCcCCHHHHHHHHHhCC
Confidence 344445533223344566788888765554333322210 00 1134455565532 23666667
Q ss_pred ccccccc----cchhhHHHhhhcCCceeecCcccchhhHHHHHHhhhhcceecCcccchHHHHHHHHHHhcccchHHHHH
Q 046167 316 VGGFWSH----CGWNSTLESICEGVPMICMPFFEDQKVNARYLSHVWGVGLELEHELERGAVEKAVRKLTVDKEGEFLRQ 391 (424)
Q Consensus 316 ~~~~i~h----gG~~t~~eal~~GvP~v~~P~~~DQ~~na~~~~~~~G~g~~~~~~~~~~~L~~ai~~ll~~~~~~~~~~ 391 (424)
+ ||.- |-..++.||+++|+|+|.....+ ....+ .+ +.|..++. -+++.|+++++..+.+ ..+.+
T Consensus 309 v--fV~pS~~Egfp~vilEAmA~G~PVVat~~gG----~~Eiv-~~-~~G~lv~~-~d~~~La~~~~~~~~~---~~~~~ 376 (405)
T PRK10125 309 A--LVFSSRVDNYPLILCEALSIGVPVIATHSDA----AREVL-QK-SGGKTVSE-EEVLQLAQLSKPEIAQ---AVFGT 376 (405)
T ss_pred E--EEECCccccCcCHHHHHHHcCCCEEEeCCCC----hHHhE-eC-CcEEEECC-CCHHHHHhccCHHHHH---Hhhhh
Confidence 6 6654 33568899999999999987654 33333 33 57888877 6888888754332222 11211
Q ss_pred HHHHHHHHHHHHhhcCCCcHHHHHHHHHHHhc
Q 046167 392 RAAQLKEEVELSTRKGGFSYNSLNELLDLINK 423 (424)
Q Consensus 392 ~a~~l~~~~~~~~~~~g~~~~a~~~~~~~~~~ 423 (424)
.....+++..+. -+....+++.++.+++
T Consensus 377 ~~~~~r~~~~~~----fs~~~~~~~y~~lY~~ 404 (405)
T PRK10125 377 TLAEFSQRSRAA----YSGQQMLEEYVNFYQN 404 (405)
T ss_pred HHHHHHHHHHHh----CCHHHHHHHHHHHHHh
Confidence 112223333333 5666777777777665
No 105
>cd03813 GT1_like_3 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=98.62 E-value=7.1e-06 Score=81.84 Aligned_cols=82 Identities=17% Similarity=0.213 Sum_probs=59.9
Q ss_pred cCCCceeeecchhhhhccccccccccc----cchhhHHHhhhcCCceeecCcccchhhHHHHHHhh----h-hcceecCc
Q 046167 296 QENGYIVKWAPQKEVLSHVAVGGFWSH----CGWNSTLESICEGVPMICMPFFEDQKVNARYLSHV----W-GVGLELEH 366 (424)
Q Consensus 296 ~~nv~v~~~ip~~~ll~~~~~~~~i~h----gG~~t~~eal~~GvP~v~~P~~~DQ~~na~~~~~~----~-G~g~~~~~ 366 (424)
.+||.+.+......++..+++ +|.- |-..++.||+++|+|+|+... ......++.. + ..|..++.
T Consensus 353 ~~~V~f~G~~~v~~~l~~aDv--~vlpS~~Eg~p~~vlEAma~G~PVVatd~----g~~~elv~~~~~~~~g~~G~lv~~ 426 (475)
T cd03813 353 EDNVKFTGFQNVKEYLPKLDV--LVLTSISEGQPLVILEAMAAGIPVVATDV----GSCRELIEGADDEALGPAGEVVPP 426 (475)
T ss_pred CCeEEEcCCccHHHHHHhCCE--EEeCchhhcCChHHHHHHHcCCCEEECCC----CChHHHhcCCcccccCCceEEECC
Confidence 478888885555668877777 5543 335789999999999999633 4444555541 0 37777776
Q ss_pred ccchHHHHHHHHHHhccc
Q 046167 367 ELERGAVEKAVRKLTVDK 384 (424)
Q Consensus 367 ~~~~~~L~~ai~~ll~~~ 384 (424)
.++++++++|.++++|+
T Consensus 427 -~d~~~la~ai~~ll~~~ 443 (475)
T cd03813 427 -ADPEALARAILRLLKDP 443 (475)
T ss_pred -CCHHHHHHHHHHHhcCH
Confidence 68999999999999984
No 106
>PLN02949 transferase, transferring glycosyl groups
Probab=98.58 E-value=6e-05 Score=74.47 Aligned_cols=112 Identities=10% Similarity=-0.019 Sum_probs=67.8
Q ss_pred hcCCCceeeecchhh---hhccccccccccc---cchh-hHHHhhhcCCceeecCcccchhhHHHHHHh--hhhcceecC
Q 046167 295 VQENGYIVKWAPQKE---VLSHVAVGGFWSH---CGWN-STLESICEGVPMICMPFFEDQKVNARYLSH--VWGVGLELE 365 (424)
Q Consensus 295 ~~~nv~v~~~ip~~~---ll~~~~~~~~i~h---gG~~-t~~eal~~GvP~v~~P~~~DQ~~na~~~~~--~~G~g~~~~ 365 (424)
+.++|.+.+++|+.+ +|..+++ +|+- -|.| ++.||+++|+|.|+....+--. ..+.. +-..|...
T Consensus 333 L~~~V~f~g~v~~~el~~ll~~a~~--~v~~s~~E~FGivvlEAMA~G~PVIa~~~gGp~~---eIV~~~~~g~tG~l~- 406 (463)
T PLN02949 333 LDGDVEFHKNVSYRDLVRLLGGAVA--GLHSMIDEHFGISVVEYMAAGAVPIAHNSAGPKM---DIVLDEDGQQTGFLA- 406 (463)
T ss_pred CCCcEEEeCCCCHHHHHHHHHhCcE--EEeCCccCCCChHHHHHHHcCCcEEEeCCCCCcc---eeeecCCCCcccccC-
Confidence 357899999998765 7777776 6632 3333 7899999999999986543100 00111 00123332
Q ss_pred cccchHHHHHHHHHHhccc-c-hHHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHh
Q 046167 366 HELERGAVEKAVRKLTVDK-E-GEFLRQRAAQLKEEVELSTRKGGFSYNSLNELLDLIN 422 (424)
Q Consensus 366 ~~~~~~~L~~ai~~ll~~~-~-~~~~~~~a~~l~~~~~~~~~~~g~~~~a~~~~~~~~~ 422 (424)
-++++++++|.++++++ + ...+.+++++..++ =+.++..+++.+.++
T Consensus 407 --~~~~~la~ai~~ll~~~~~~r~~m~~~ar~~~~~--------FS~e~~~~~~~~~i~ 455 (463)
T PLN02949 407 --TTVEEYADAILEVLRMRETERLEIAAAARKRANR--------FSEQRFNEDFKDAIR 455 (463)
T ss_pred --CCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH--------cCHHHHHHHHHHHHH
Confidence 28899999999999852 1 23455555543332 344456666655554
No 107
>PRK14098 glycogen synthase; Provisional
Probab=98.55 E-value=4.5e-05 Score=76.08 Aligned_cols=117 Identities=12% Similarity=-0.007 Sum_probs=70.5
Q ss_pred HhcCCCceeeecchh---hhhcccccccccccc---ch-hhHHHhhhcCCceeecCcccchhhHHHHHHhhhhcceecCc
Q 046167 294 DVQENGYIVKWAPQK---EVLSHVAVGGFWSHC---GW-NSTLESICEGVPMICMPFFEDQKVNARYLSHVWGVGLELEH 366 (424)
Q Consensus 294 ~~~~nv~v~~~ip~~---~ll~~~~~~~~i~hg---G~-~t~~eal~~GvP~v~~P~~~DQ~~na~~~~~~~G~g~~~~~ 366 (424)
+.++++.+.+.++.. .+++.+|+ ++.-+ |. .+.+||+++|+|.|+....+-........++. +.|..++.
T Consensus 359 ~~~~~V~~~g~~~~~~~~~~~a~aDi--~l~PS~~E~~Gl~~lEAma~G~ppVv~~~GGl~d~v~~~~~~~-~~G~l~~~ 435 (489)
T PRK14098 359 EHPEQVSVQTEFTDAFFHLAIAGLDM--LLMPGKIESCGMLQMFAMSYGTIPVAYAGGGIVETIEEVSEDK-GSGFIFHD 435 (489)
T ss_pred HCCCCEEEEEecCHHHHHHHHHhCCE--EEeCCCCCCchHHHHHHHhCCCCeEEecCCCCceeeecCCCCC-CceeEeCC
Confidence 445788888888874 47877777 66543 22 36789999999988876543211111111233 67777776
Q ss_pred ccchHHHHHHHHHHh---cccchHHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHhc
Q 046167 367 ELERGAVEKAVRKLT---VDKEGEFLRQRAAQLKEEVELSTRKGGFSYNSLNELLDLINK 423 (424)
Q Consensus 367 ~~~~~~L~~ai~~ll---~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~a~~~~~~~~~~ 423 (424)
.+++.|.++|.+++ +| +. ..++++.+.. .+.-+-.+.++++++.+++
T Consensus 436 -~d~~~la~ai~~~l~~~~~---~~---~~~~~~~~~~---~~~fsw~~~a~~y~~lY~~ 485 (489)
T PRK14098 436 -YTPEALVAKLGEALALYHD---EE---RWEELVLEAM---ERDFSWKNSAEEYAQLYRE 485 (489)
T ss_pred -CCHHHHHHHHHHHHHHHcC---HH---HHHHHHHHHh---cCCCChHHHHHHHHHHHHH
Confidence 68999999999876 44 22 2222222211 1224556666777666553
No 108
>cd04950 GT1_like_1 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=98.55 E-value=9.9e-05 Score=71.27 Aligned_cols=109 Identities=15% Similarity=0.074 Sum_probs=67.6
Q ss_pred cCCCceeeecchhh---hhcccccccccc------ccc-hhhHHHhhhcCCceeecCcccchhhHHHHHHhhhhcceecC
Q 046167 296 QENGYIVKWAPQKE---VLSHVAVGGFWS------HCG-WNSTLESICEGVPMICMPFFEDQKVNARYLSHVWGVGLELE 365 (424)
Q Consensus 296 ~~nv~v~~~ip~~~---ll~~~~~~~~i~------hgG-~~t~~eal~~GvP~v~~P~~~DQ~~na~~~~~~~G~g~~~~ 365 (424)
.+||++.+++|+.+ .+.++++..+-. .++ ...+.|++++|+|+|..+. ....+. .+.+....
T Consensus 253 ~~nV~~~G~~~~~~l~~~l~~~Dv~l~P~~~~~~~~~~~P~Kl~EylA~G~PVVat~~-------~~~~~~-~~~~~~~~ 324 (373)
T cd04950 253 LPNVHYLGPKPYKELPAYLAGFDVAILPFRLNELTRATSPLKLFEYLAAGKPVVATPL-------PEVRRY-EDEVVLIA 324 (373)
T ss_pred CCCEEEeCCCCHHHHHHHHHhCCEEecCCccchhhhcCCcchHHHHhccCCCEEecCc-------HHHHhh-cCcEEEeC
Confidence 37899999999766 677788733321 223 3568999999999998753 222333 24233333
Q ss_pred cccchHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHhc
Q 046167 366 HELERGAVEKAVRKLTVDKEGEFLRQRAAQLKEEVELSTRKGGFSYNSLNELLDLINK 423 (424)
Q Consensus 366 ~~~~~~~L~~ai~~ll~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~a~~~~~~~~~~ 423 (424)
-+++++.++|++++.++.....+ ++ .+ +.+. .+-...++.+++.+++
T Consensus 325 --~d~~~~~~ai~~~l~~~~~~~~~-~~---~~-~~~~----~sW~~~a~~~~~~l~~ 371 (373)
T cd04950 325 --DDPEEFVAAIEKALLEDGPARER-RR---LR-LAAQ----NSWDARAAEMLEALQE 371 (373)
T ss_pred --CCHHHHHHHHHHHHhcCCchHHH-HH---HH-HHHH----CCHHHHHHHHHHHHHh
Confidence 38999999999987553211111 11 11 3333 5666777777766654
No 109
>PF02350 Epimerase_2: UDP-N-acetylglucosamine 2-epimerase; InterPro: IPR003331 UDP-N-acetylglucosamine 2-epimerase 5.1.3.14 from EC catalyses the production of UDP-ManNAc from UDP-GlcNAc. Some of the enzymes is this family are bifunctional. In microorganisms the epimerase is involved in in the synthesis of the capsule precursor UDP-ManNAcA [, ]. The protein from rat liver displays both epimerase and kinase activity [].; GO: 0008761 UDP-N-acetylglucosamine 2-epimerase activity, 0006047 UDP-N-acetylglucosamine metabolic process, 0009103 lipopolysaccharide biosynthetic process; PDB: 1V4V_B 3BEO_B 3DZC_B 3OT5_B 1O6C_B 1VGV_D 1F6D_C.
Probab=98.53 E-value=1e-06 Score=83.64 Aligned_cols=244 Identities=16% Similarity=0.120 Sum_probs=117.1
Q ss_pred hHHHHHHHHHHhhcCCCCCceEEEe--cCcc-chHHHHHHHhCCceEEEecchHHHHHHHHhhhcccccCCCCCChhHHH
Q 046167 89 EPFRNWLVQMIKEQQPGDEIVCIIY--DEVM-YFAEASASQLNVQSIILRTSGAVTVVARLVLFQLKEEGYNPLKESYVQ 165 (424)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~pDlvi~--d~~~-~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 165 (424)
..+.+.+++. +||+||. |-.. .+++.+|..++||++-+... ...... ..|..+
T Consensus 57 ~~~~~~~~~~--------~Pd~Vlv~GD~~~~la~alaA~~~~ipv~HieaG-lRs~d~-----------~~g~~d---- 112 (346)
T PF02350_consen 57 IELADVLERE--------KPDAVLVLGDRNEALAAALAAFYLNIPVAHIEAG-LRSGDR-----------TEGMPD---- 112 (346)
T ss_dssp HHHHHHHHHH--------T-SEEEEETTSHHHHHHHHHHHHTT-EEEEES------S-T-----------TSSTTH----
T ss_pred HHHHHHHHhc--------CCCEEEEEcCCchHHHHHHHHHHhCCCEEEecCC-CCcccc-----------CCCCch----
Confidence 3444566666 8998877 5444 67788999999997765443 111000 001111
Q ss_pred HHHHhhhccCCceEEecChhhhhHHHHHHHHhcc-CCCeeeecccccCCCCCCCCCcccc-ccc--ccccccCCCCeEEE
Q 046167 166 LINNAYSARTSSAVISNTIYCLEESVLSQLQQYF-KVPNFPIGPLHKFAPSSNGSLLKED-TSC--ISWLNNQSPKSVIY 241 (424)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~vGp~~~~~~~~~~~~~~~~-~~l--~~~l~~~~~~~~I~ 241 (424)
...|......++..+..+-...+ ...+... +.+++.+|....+.-. ...+.. ..+ ...+. ..+++.++
T Consensus 113 e~~R~~i~~la~lhf~~t~~~~~----~L~~~G~~~~rI~~vG~~~~D~l~---~~~~~~~~~~~~~~i~~-~~~~~~iL 184 (346)
T PF02350_consen 113 EINRHAIDKLAHLHFAPTEEARE----RLLQEGEPPERIFVVGNPGIDALL---QNKEEIEEKYKNSGILQ-DAPKPYIL 184 (346)
T ss_dssp HHHHHHHHHH-SEEEESSHHHHH----HHHHTT--GGGEEE---HHHHHHH---HHHHTTCC-HHHHHHHH-CTTSEEEE
T ss_pred hhhhhhhhhhhhhhccCCHHHHH----HHHhcCCCCCeEEEEChHHHHHHH---HhHHHHhhhhhhHHHHh-ccCCCEEE
Confidence 11111112335555555533221 1111112 1348888865333100 000000 001 01111 25678999
Q ss_pred EEeCCcccCC----HHHHHHHHHHHHhC-CCCeEEEEcCCCCCCCcccccCchhHHHHhc--CCCceeeecchh---hhh
Q 046167 242 VSLGSVASMD----KKELEEMAWGLVNS-KQPFLWVIRPRTNNAPEGIELLPKVLAEDVQ--ENGYIVKWAPQK---EVL 311 (424)
Q Consensus 242 vs~Gs~~~~~----~~~~~~~~~a~~~~-~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~--~nv~v~~~ip~~---~ll 311 (424)
|++=...... ...+..++.++.+. +..+||.+-... .....+.+... +|+.+.+.+++. .++
T Consensus 185 vt~H~~t~~~~~~~~~~i~~~l~~L~~~~~~~vi~~~hn~p--------~~~~~i~~~l~~~~~v~~~~~l~~~~~l~ll 256 (346)
T PF02350_consen 185 VTLHPVTNEDNPERLEQILEALKALAERQNVPVIFPLHNNP--------RGSDIIIEKLKKYDNVRLIEPLGYEEYLSLL 256 (346)
T ss_dssp EE-S-CCCCTHH--HHHHHHHHHHHHHHTTEEEEEE--S-H--------HHHHHHHHHHTT-TTEEEE----HHHHHHHH
T ss_pred EEeCcchhcCChHHHHHHHHHHHHHHhcCCCcEEEEecCCc--------hHHHHHHHHhcccCCEEEECCCCHHHHHHHH
Confidence 9884444433 34555556666655 667877773211 11122222222 588888766654 488
Q ss_pred ccccccccccccchhhHHHhhhcCCceeecCcccchhhHHHHHHhh-hhcceecCcccchHHHHHHHHHHhcc
Q 046167 312 SHVAVGGFWSHCGWNSTLESICEGVPMICMPFFEDQKVNARYLSHV-WGVGLELEHELERGAVEKAVRKLTVD 383 (424)
Q Consensus 312 ~~~~~~~~i~hgG~~t~~eal~~GvP~v~~P~~~DQ~~na~~~~~~-~G~g~~~~~~~~~~~L~~ai~~ll~~ 383 (424)
+++++ +|+.+| |-.-||.+.|+|.|.+ .++..|-+-. .|..+.+. .+.+.|.+++++++++
T Consensus 257 ~~a~~--vvgdSs-GI~eEa~~lg~P~v~i------R~~geRqe~r~~~~nvlv~--~~~~~I~~ai~~~l~~ 318 (346)
T PF02350_consen 257 KNADL--VVGDSS-GIQEEAPSLGKPVVNI------RDSGERQEGRERGSNVLVG--TDPEAIIQAIEKALSD 318 (346)
T ss_dssp HHESE--EEESSH-HHHHHGGGGT--EEEC------SSS-S-HHHHHTTSEEEET--SSHHHHHHHHHHHHH-
T ss_pred hcceE--EEEcCc-cHHHHHHHhCCeEEEe------cCCCCCHHHHhhcceEEeC--CCHHHHHHHHHHHHhC
Confidence 88888 999999 5555999999999999 3333222220 14444433 6999999999999986
No 110
>COG1519 KdtA 3-deoxy-D-manno-octulosonic-acid transferase [Cell envelope biogenesis, outer membrane]
Probab=98.46 E-value=0.00033 Score=66.05 Aligned_cols=328 Identities=15% Similarity=0.165 Sum_probs=184.5
Q ss_pred EEEEcCCCccChHHHHHHHHHHHhC--CCeEEEEe-CCCCCCCC-CCC-CCceEEeCCCCCCCCccccccHHHHHHHHHH
Q 046167 11 VVLVPSPHQGHINPMLQLGTILHSK--GFSITVVH-TQFNSPNP-SNH-PEFEFQSIPDGLMDVNISARNLVDSILLLNE 85 (424)
Q Consensus 11 il~~~~~~~GH~~p~~~la~~L~~~--Gh~V~~~~-~~~~~~~~-~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (424)
.+-+-.-+.|-++-.++|.++|+++ ++.|++-| ++...+.. ... ..+....+|=+ ...
T Consensus 51 ~vWiHaaSVGEv~a~~pLv~~l~~~~P~~~ilvTt~T~Tg~e~a~~~~~~~v~h~YlP~D----------~~~------- 113 (419)
T COG1519 51 LVWIHAASVGEVLAALPLVRALRERFPDLRILVTTMTPTGAERAAALFGDSVIHQYLPLD----------LPI------- 113 (419)
T ss_pred eEEEEecchhHHHHHHHHHHHHHHhCCCCCEEEEecCccHHHHHHHHcCCCeEEEecCcC----------chH-------
Confidence 3444444779999999999999999 88888877 43333331 111 23555555511 111
Q ss_pred hchhHHHHHHHHHHhhcCCCCCceEEEecCcc--chHHHHHHHhCCceEEEecchHHHHHHHHhhhcccccCCCCCChhH
Q 046167 86 NCREPFRNWLVQMIKEQQPGDEIVCIIYDEVM--YFAEASASQLNVQSIILRTSGAVTVVARLVLFQLKEEGYNPLKESY 163 (424)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~pDlvi~d~~~--~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 163 (424)
.++..++.+ +||++|.---. +....-+++.|+|.+.+..-- ...++. .
T Consensus 114 ----~v~rFl~~~--------~P~l~Ii~EtElWPnli~e~~~~~~p~~LvNaRL-------------S~rS~~-----~ 163 (419)
T COG1519 114 ----AVRRFLRKW--------RPKLLIIMETELWPNLINELKRRGIPLVLVNARL-------------SDRSFA-----R 163 (419)
T ss_pred ----HHHHHHHhc--------CCCEEEEEeccccHHHHHHHHHcCCCEEEEeeee-------------chhhhH-----H
Confidence 122245556 89987765433 555567888999999874421 001100 0
Q ss_pred HHHHHH-hhh-ccCCceEEecChhhhhHHHHHHHHhccC-CCeeeecccccCCCCCCCCCcccccccccccccCCCCeEE
Q 046167 164 VQLINN-AYS-ARTSSAVISNTIYCLEESVLSQLQQYFK-VPNFPIGPLHKFAPSSNGSLLKEDTSCISWLNNQSPKSVI 240 (424)
Q Consensus 164 ~~~~~~-~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~~vGp~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~I 240 (424)
+..+.+ .+. ..+-+.++..+-..-+ .+.. ++ .++..+|.+-......+. ....-..+...++. ++ .+
T Consensus 164 y~k~~~~~~~~~~~i~li~aQse~D~~-----Rf~~-LGa~~v~v~GNlKfd~~~~~~-~~~~~~~~r~~l~~--~r-~v 233 (419)
T COG1519 164 YAKLKFLARLLFKNIDLILAQSEEDAQ-----RFRS-LGAKPVVVTGNLKFDIEPPPQ-LAAELAALRRQLGG--HR-PV 233 (419)
T ss_pred HHHHHHHHHHHHHhcceeeecCHHHHH-----HHHh-cCCcceEEecceeecCCCChh-hHHHHHHHHHhcCC--CC-ce
Confidence 111222 111 3344555555432221 2222 32 457888887544322000 00001112333332 13 45
Q ss_pred EEEeCCcccCCHHHHHHHHHHHHhCC--CCeEEEEcCCCCCCCcccccCchhHH---HHh------------------cC
Q 046167 241 YVSLGSVASMDKKELEEMAWGLVNSK--QPFLWVIRPRTNNAPEGIELLPKVLA---EDV------------------QE 297 (424)
Q Consensus 241 ~vs~Gs~~~~~~~~~~~~~~a~~~~~--~~~i~~~~~~~~~~~~~~~~l~~~~~---~~~------------------~~ 297 (424)
.|..+|... ..+.+..+..++.+.. ..+||+-+ .|+.+. +.+ ..
T Consensus 234 ~iaaSTH~G-Eeei~l~~~~~l~~~~~~~llIlVPR------------HpERf~~v~~l~~~~gl~~~~rS~~~~~~~~t 300 (419)
T COG1519 234 WVAASTHEG-EEEIILDAHQALKKQFPNLLLILVPR------------HPERFKAVENLLKRKGLSVTRRSQGDPPFSDT 300 (419)
T ss_pred EEEecCCCc-hHHHHHHHHHHHHhhCCCceEEEecC------------ChhhHHHHHHHHHHcCCeEEeecCCCCCCCCC
Confidence 555566543 5566666666666544 33444432 232222 111 12
Q ss_pred CCceeeecch-hhhhccccc----cccccccchhhHHHhhhcCCceeecCcccchhhHHHHHHhhhhcceecCcccchHH
Q 046167 298 NGYIVKWAPQ-KEVLSHVAV----GGFWSHCGWNSTLESICEGVPMICMPFFEDQKVNARYLSHVWGVGLELEHELERGA 372 (424)
Q Consensus 298 nv~v~~~ip~-~~ll~~~~~----~~~i~hgG~~t~~eal~~GvP~v~~P~~~DQ~~na~~~~~~~G~g~~~~~~~~~~~ 372 (424)
+|.+.|-+-- ..++.-+++ +.++-+||+| ..|++++|+|+|.=|+...|.+-++++... |.|+.++. .+.
T Consensus 301 dV~l~DtmGEL~l~y~~adiAFVGGSlv~~GGHN-~LEpa~~~~pvi~Gp~~~Nf~ei~~~l~~~-ga~~~v~~---~~~ 375 (419)
T COG1519 301 DVLLGDTMGELGLLYGIADIAFVGGSLVPIGGHN-PLEPAAFGTPVIFGPYTFNFSDIAERLLQA-GAGLQVED---ADL 375 (419)
T ss_pred cEEEEecHhHHHHHHhhccEEEECCcccCCCCCC-hhhHHHcCCCEEeCCccccHHHHHHHHHhc-CCeEEECC---HHH
Confidence 4455555543 235555555 4466788887 579999999999999999999999999995 99999884 888
Q ss_pred HHHHHHHHhcccc-hHHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHhc
Q 046167 373 VEKAVRKLTVDKE-GEFLRQRAAQLKEEVELSTRKGGFSYNSLNELLDLINK 423 (424)
Q Consensus 373 L~~ai~~ll~~~~-~~~~~~~a~~l~~~~~~~~~~~g~~~~a~~~~~~~~~~ 423 (424)
|.+++..+++|++ +..|.+++.++-+..+ .+.++.++.|.+
T Consensus 376 l~~~v~~l~~~~~~r~~~~~~~~~~v~~~~----------gal~r~l~~l~~ 417 (419)
T COG1519 376 LAKAVELLLADEDKREAYGRAGLEFLAQNR----------GALARTLEALKP 417 (419)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHhh----------HHHHHHHHHhhh
Confidence 9999999999843 2333344443333332 367777776654
No 111
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.45 E-value=0.00026 Score=70.09 Aligned_cols=113 Identities=19% Similarity=0.113 Sum_probs=70.9
Q ss_pred cCCCceeeecchh-hhhccccccccccc---cc-hhhHHHhhhcCCceeecCcccchhhHHHHHHhhhhcceecCcccch
Q 046167 296 QENGYIVKWAPQK-EVLSHVAVGGFWSH---CG-WNSTLESICEGVPMICMPFFEDQKVNARYLSHVWGVGLELEHELER 370 (424)
Q Consensus 296 ~~nv~v~~~ip~~-~ll~~~~~~~~i~h---gG-~~t~~eal~~GvP~v~~P~~~DQ~~na~~~~~~~G~g~~~~~~~~~ 370 (424)
.++|.+.+|..+. .+|..+++ ||.. -| ..++.||+++|+|+|+... ..+...+.++ ..|..++. .++
T Consensus 454 ~d~V~FlG~~~Dv~~~LaaADV--fVlPS~~EGfp~vlLEAMA~GlPVVATdv----GG~~EiV~dG-~nG~LVp~-~D~ 525 (578)
T PRK15490 454 LERILFVGASRDVGYWLQKMNV--FILFSRYEGLPNVLIEAQMVGVPVISTPA----GGSAECFIEG-VSGFILDD-AQT 525 (578)
T ss_pred CCcEEECCChhhHHHHHHhCCE--EEEcccccCccHHHHHHHHhCCCEEEeCC----CCcHHHcccC-CcEEEECC-CCh
Confidence 4788888886543 47877777 7753 34 5689999999999998754 4566777774 88888876 455
Q ss_pred HHHHHHH---HHHhcccc-hHHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHhc
Q 046167 371 GAVEKAV---RKLTVDKE-GEFLRQRAAQLKEEVELSTRKGGFSYNSLNELLDLINK 423 (424)
Q Consensus 371 ~~L~~ai---~~ll~~~~-~~~~~~~a~~l~~~~~~~~~~~g~~~~a~~~~~~~~~~ 423 (424)
+.+.+++ .++..+.+ ...+.+++++ .+.+.-+....++.+.+.+.+
T Consensus 526 ~aLa~ai~lA~aL~~ll~~~~~mg~~ARe-------~V~e~FS~e~Mv~~y~ki~~~ 575 (578)
T PRK15490 526 VNLDQACRYAEKLVNLWRSRTGICQQTQS-------FLQERFTVEHMVGTFVKTIAS 575 (578)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHhhCCHHHHHHHHHHHHHh
Confidence 5565554 23332210 0122233332 222225667777777776654
No 112
>PF02684 LpxB: Lipid-A-disaccharide synthetase; InterPro: IPR003835 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. These enzymes belong to the glycosyltransferase family 19 GT19 from CAZY. Lipid-A-disaccharide synthetase 2.4.1.182 from EC is involved with acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase 2.3.1.129 from EC and tetraacyldisaccharide 4'-kinase 2.7.1.130 from EC in the biosynthesis of the phosphorylated glycolipid, lipid A, in the outer membrane of Escherichia coli and other bacteria. These enzymes catalyse the first disaccharide step in the synthesis of lipid-A-disaccharide.; GO: 0008915 lipid-A-disaccharide synthase activity, 0009245 lipid A biosynthetic process
Probab=98.43 E-value=9.5e-05 Score=70.24 Aligned_cols=327 Identities=16% Similarity=0.122 Sum_probs=164.5
Q ss_pred EEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCCCCCCCCCCCCCceEEeCCCCCCCCccccccHHHHHHHHHHhchhH
Q 046167 11 VVLVPSPHQGHINPMLQLGTILHSKGFSITVVHTQFNSPNPSNHPEFEFQSIPDGLMDVNISARNLVDSILLLNENCREP 90 (424)
Q Consensus 11 il~~~~~~~GH~~p~~~la~~L~~~Gh~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (424)
|+++++=..|++. ...|.++|+++.=++.+.+-...... . .|++... +......-++.+.+..+. .....
T Consensus 1 I~i~AGE~SGD~~-ga~Li~~Lk~~~p~~~~~GvGG~~M~-~--~G~~~l~-----d~~~lsvmG~~Evl~~l~-~~~~~ 70 (373)
T PF02684_consen 1 IFISAGEASGDLH-GARLIRALKARDPDIEFYGVGGPRMQ-A--AGVESLF-----DMEELSVMGFVEVLKKLP-KLKRL 70 (373)
T ss_pred CEEEeeCccHHHH-HHHHHHHHHhhCCCcEEEEEechHHH-h--CCCceec-----chHHhhhccHHHHHHHHH-HHHHH
Confidence 4556665667755 35688999998867777665322211 1 2333221 111122334555555544 33444
Q ss_pred HHHHHHHHHhhcCCCCCceEEEe-cCcc--chHHHHHHHhCCc--eEE-EecchHHHHHHHHhhhcccccCCCCCChhHH
Q 046167 91 FRNWLVQMIKEQQPGDEIVCIIY-DEVM--YFAEASASQLNVQ--SII-LRTSGAVTVVARLVLFQLKEEGYNPLKESYV 164 (424)
Q Consensus 91 ~~~~~~~~~~~~~~~~~pDlvi~-d~~~--~~~~~~A~~lgiP--~v~-~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 164 (424)
.+++.+.+.+. +||++|. |+-. .-....+++.|+| ++. ++++.|.+ -+.+ .
T Consensus 71 ~~~~~~~~~~~-----~pd~vIlID~pgFNlrlak~lk~~~~~~~viyYI~PqvWAW---------------r~~R---~ 127 (373)
T PF02684_consen 71 FRKLVERIKEE-----KPDVVILIDYPGFNLRLAKKLKKRGIPIKVIYYISPQVWAW---------------RPGR---A 127 (373)
T ss_pred HHHHHHHHHHc-----CCCEEEEeCCCCccHHHHHHHHHhCCCceEEEEECCceeee---------------CccH---H
Confidence 55566666555 8997765 6422 4445567788888 554 33332221 1111 1
Q ss_pred HHHHHhhhccCCceEEecChhhhhHHHHHHHHhccCCCeeeec-ccccCCCCCCCCCcccccccccccccCCCCeEEEEE
Q 046167 165 QLINNAYSARTSSAVISNTIYCLEESVLSQLQQYFKVPNFPIG-PLHKFAPSSNGSLLKEDTSCISWLNNQSPKSVIYVS 243 (424)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vG-p~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~I~vs 243 (424)
+.+.+ ....-..+++ +|.+ ++ ...+.++.||| |+....+. . .......+.+ -.+++++|-+-
T Consensus 128 ~~i~~---~~D~ll~ifP----FE~~---~y-~~~g~~~~~VGHPl~d~~~~----~-~~~~~~~~~~-l~~~~~iIaLL 190 (373)
T PF02684_consen 128 KKIKK---YVDHLLVIFP----FEPE---FY-KKHGVPVTYVGHPLLDEVKP----E-PDRAEAREKL-LDPDKPIIALL 190 (373)
T ss_pred HHHHH---HHhheeECCc----ccHH---HH-hccCCCeEEECCcchhhhcc----C-CCHHHHHHhc-CCCCCcEEEEe
Confidence 11111 1111122221 2222 22 23447899999 76655332 1 1111122222 23567899999
Q ss_pred eCCcccCCHHHHHHHHHHHHh---C--CCCeEEEEcCCCCCCCcccccCchhHHH---HhcCCCceeee-cchhhhhccc
Q 046167 244 LGSVASMDKKELEEMAWGLVN---S--KQPFLWVIRPRTNNAPEGIELLPKVLAE---DVQENGYIVKW-APQKEVLSHV 314 (424)
Q Consensus 244 ~Gs~~~~~~~~~~~~~~a~~~---~--~~~~i~~~~~~~~~~~~~~~~l~~~~~~---~~~~nv~v~~~-ip~~~ll~~~ 314 (424)
.||....=...+..++++.+. . +..+++.+... ...+.+.+ ....++.+.-. -.-.+++..+
T Consensus 191 PGSR~~EI~rllP~~l~aa~~l~~~~p~l~fvvp~a~~---------~~~~~i~~~~~~~~~~~~~~~~~~~~~~~m~~a 261 (373)
T PF02684_consen 191 PGSRKSEIKRLLPIFLEAAKLLKKQRPDLQFVVPVAPE---------VHEELIEEILAEYPPDVSIVIIEGESYDAMAAA 261 (373)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHhCCCeEEEEecCCH---------HHHHHHHHHHHhhCCCCeEEEcCCchHHHHHhC
Confidence 999876223333444555433 2 33444443111 11111111 11222333221 2344578777
Q ss_pred cccccccccchhhHHHhhhcCCceeecCccc-chhhHHHHHHhhhhc-c-----------eecCc-ccchHHHHHHHHHH
Q 046167 315 AVGGFWSHCGWNSTLESICEGVPMICMPFFE-DQKVNARYLSHVWGV-G-----------LELEH-ELERGAVEKAVRKL 380 (424)
Q Consensus 315 ~~~~~i~hgG~~t~~eal~~GvP~v~~P~~~-DQ~~na~~~~~~~G~-g-----------~~~~~-~~~~~~L~~ai~~l 380 (424)
++ .+.-+| +.|+|+...|+|+|++=-.. =....|+++.+ ... | ..+-. +.+++.|.+++..+
T Consensus 262 d~--al~~SG-TaTLE~Al~g~P~Vv~Yk~~~lt~~iak~lvk-~~~isL~Niia~~~v~PEliQ~~~~~~~i~~~~~~l 337 (373)
T PF02684_consen 262 DA--ALAASG-TATLEAALLGVPMVVAYKVSPLTYFIAKRLVK-VKYISLPNIIAGREVVPELIQEDATPENIAAELLEL 337 (373)
T ss_pred cc--hhhcCC-HHHHHHHHhCCCEEEEEcCcHHHHHHHHHhhc-CCEeechhhhcCCCcchhhhcccCCHHHHHHHHHHH
Confidence 76 555444 46799999999999863321 23445566544 221 1 11112 68999999999999
Q ss_pred hcccchHHHHHHHHHHHHHHHHH
Q 046167 381 TVDKEGEFLRQRAAQLKEEVELS 403 (424)
Q Consensus 381 l~~~~~~~~~~~a~~l~~~~~~~ 403 (424)
|.|. ..++......+.+++.
T Consensus 338 l~~~---~~~~~~~~~~~~~~~~ 357 (373)
T PF02684_consen 338 LENP---EKRKKQKELFREIRQL 357 (373)
T ss_pred hcCH---HHHHHHHHHHHHHHHh
Confidence 9994 4344444444455444
No 113
>PLN02501 digalactosyldiacylglycerol synthase
Probab=98.40 E-value=0.00011 Score=73.77 Aligned_cols=76 Identities=14% Similarity=0.117 Sum_probs=52.2
Q ss_pred CCceeeecchh-hhhcccccccccccc---c-hhhHHHhhhcCCceeecCcccchhhHHHHHHhhhhcceecCcccchHH
Q 046167 298 NGYIVKWAPQK-EVLSHVAVGGFWSHC---G-WNSTLESICEGVPMICMPFFEDQKVNARYLSHVWGVGLELEHELERGA 372 (424)
Q Consensus 298 nv~v~~~ip~~-~ll~~~~~~~~i~hg---G-~~t~~eal~~GvP~v~~P~~~DQ~~na~~~~~~~G~g~~~~~~~~~~~ 372 (424)
++.+.++.++. .+++.+++ ||.-+ | ..++.||+++|+|+|+.-..+.. . +... +.|. +. -+.++
T Consensus 602 ~V~FLG~~dd~~~lyasaDV--FVlPS~sEgFGlVlLEAMA~GlPVVATd~pG~e----~-V~~g-~nGl-l~--~D~Ea 670 (794)
T PLN02501 602 NLNFLKGRDHADDSLHGYKV--FINPSISDVLCTATAEALAMGKFVVCADHPSNE----F-FRSF-PNCL-TY--KTSED 670 (794)
T ss_pred EEEecCCCCCHHHHHHhCCE--EEECCCcccchHHHHHHHHcCCCEEEecCCCCc----e-Eeec-CCeE-ec--CCHHH
Confidence 35566777765 48877777 76642 2 46889999999999998664422 1 3231 3332 22 37999
Q ss_pred HHHHHHHHhccc
Q 046167 373 VEKAVRKLTVDK 384 (424)
Q Consensus 373 L~~ai~~ll~~~ 384 (424)
+.++|.++|.++
T Consensus 671 fAeAI~~LLsd~ 682 (794)
T PLN02501 671 FVAKVKEALANE 682 (794)
T ss_pred HHHHHHHHHhCc
Confidence 999999999884
No 114
>COG0763 LpxB Lipid A disaccharide synthetase [Cell envelope biogenesis, outer membrane]
Probab=98.29 E-value=0.00059 Score=63.70 Aligned_cols=348 Identities=14% Similarity=0.123 Sum_probs=179.8
Q ss_pred ceEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCCCCCCCCCCCCCceEEeCCCCCCCCccccccHHHHHHHHHHhch
Q 046167 9 RRVVLVPSPHQGHINPMLQLGTILHSKGFSITVVHTQFNSPNPSNHPEFEFQSIPDGLMDVNISARNLVDSILLLNENCR 88 (424)
Q Consensus 9 ~ril~~~~~~~GH~~p~~~la~~L~~~Gh~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (424)
+||+++++=..|++.- -.|.++|+++==+|.|++-....... .|++. -++.......++.+.+..+.. ..
T Consensus 2 ~ki~i~AGE~SGDllG-a~LikaLk~~~~~~efvGvgG~~m~a---eG~~s-----l~~~~elsvmGf~EVL~~lp~-ll 71 (381)
T COG0763 2 LKIALSAGEASGDLLG-AGLIKALKARYPDVEFVGVGGEKMEA---EGLES-----LFDMEELSVMGFVEVLGRLPR-LL 71 (381)
T ss_pred ceEEEEecccchhhHH-HHHHHHHHhhCCCeEEEEeccHHHHh---ccCcc-----ccCHHHHHHhhHHHHHHHHHH-HH
Confidence 5899999888898654 45778888873388888764222221 12111 112222233455666665543 34
Q ss_pred hHHHHHHHHHHhhcCCCCCceEEEe-cCc--cchHHHHHHHhC--CceEEEecchHHHHHHHHhhhcccccCCCCCChhH
Q 046167 89 EPFRNWLVQMIKEQQPGDEIVCIIY-DEV--MYFAEASASQLN--VQSIILRTSGAVTVVARLVLFQLKEEGYNPLKESY 163 (424)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~pDlvi~-d~~--~~~~~~~A~~lg--iP~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 163 (424)
...+++++.+..+ +||++|. |.. ..-...-.++.| +|.|.+.. |+. |.|.|.+-
T Consensus 72 k~~~~~~~~i~~~-----kpD~~i~IDsPdFnl~vak~lrk~~p~i~iihYV~------------PsV--WAWr~~Ra-- 130 (381)
T COG0763 72 KIRRELVRYILAN-----KPDVLILIDSPDFNLRVAKKLRKAGPKIKIIHYVS------------PSV--WAWRPKRA-- 130 (381)
T ss_pred HHHHHHHHHHHhc-----CCCEEEEeCCCCCchHHHHHHHHhCCCCCeEEEEC------------cce--eeechhhH--
Confidence 4455677776665 8998776 532 233334455667 88776422 222 22222110
Q ss_pred HHHHHHhhhccCCceEEecChhhhhHHHHHHHHhccCCCeeeec-ccccCCCCCCCCCcccccccccccccCCCCeEEEE
Q 046167 164 VQLINNAYSARTSSAVISNTIYCLEESVLSQLQQYFKVPNFPIG-PLHKFAPSSNGSLLKEDTSCISWLNNQSPKSVIYV 242 (424)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vG-p~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~I~v 242 (424)
.. . ..-.+.++. +--+|.. ++. .++-+.+||| |+....+. .+......+-+....+++++.+
T Consensus 131 -~~---i--~~~~D~lLa--ilPFE~~---~y~-k~g~~~~yVGHpl~d~i~~-----~~~r~~ar~~l~~~~~~~~lal 193 (381)
T COG0763 131 -VK---I--AKYVDHLLA--ILPFEPA---FYD-KFGLPCTYVGHPLADEIPL-----LPDREAAREKLGIDADEKTLAL 193 (381)
T ss_pred -HH---H--HHHhhHeee--ecCCCHH---HHH-hcCCCeEEeCChhhhhccc-----cccHHHHHHHhCCCCCCCeEEE
Confidence 00 0 111122211 1112222 222 2445699999 66554321 1222223333444466789999
Q ss_pred EeCCcccCCHHHHHHHHHHHHhC-----CCCeEEEEcCCCCCCCcccccCchhHH-HHhcCCC-ceeeecch---hhhhc
Q 046167 243 SLGSVASMDKKELEEMAWGLVNS-----KQPFLWVIRPRTNNAPEGIELLPKVLA-EDVQENG-YIVKWAPQ---KEVLS 312 (424)
Q Consensus 243 s~Gs~~~~~~~~~~~~~~a~~~~-----~~~~i~~~~~~~~~~~~~~~~l~~~~~-~~~~~nv-~v~~~ip~---~~ll~ 312 (424)
-.||..+.=......+.++.+++ +.++++.+... .-+... +....+. ...-++.. ...+.
T Consensus 194 LPGSR~sEI~rl~~~f~~a~~~l~~~~~~~~~vlp~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 263 (381)
T COG0763 194 LPGSRRSEIRRLLPPFVQAAQELKARYPDLKFVLPLVNA----------KYRRIIEEALKWEVAGLSLILIDGEKRKAFA 263 (381)
T ss_pred ecCCcHHHHHHHHHHHHHHHHHHHhhCCCceEEEecCcH----------HHHHHHHHHhhccccCceEEecCchHHHHHH
Confidence 99998862223333344444332 35665555211 001111 1121221 12223322 23666
Q ss_pred cccccccccccchhhHHHhhhcCCceeecCccc-chhhHHHHHHhhhhcc------------eecCc-ccchHHHHHHHH
Q 046167 313 HVAVGGFWSHCGWNSTLESICEGVPMICMPFFE-DQKVNARYLSHVWGVG------------LELEH-ELERGAVEKAVR 378 (424)
Q Consensus 313 ~~~~~~~i~hgG~~t~~eal~~GvP~v~~P~~~-DQ~~na~~~~~~~G~g------------~~~~~-~~~~~~L~~ai~ 378 (424)
.||+ .+.-+| +-++|+..+|+|||+.=-.. =-...++++.. .... ..+-. ..+++.|++++.
T Consensus 264 ~aD~--al~aSG-T~tLE~aL~g~P~Vv~Yk~~~it~~iak~lvk-~~yisLpNIi~~~~ivPEliq~~~~pe~la~~l~ 339 (381)
T COG0763 264 AADA--ALAASG-TATLEAALAGTPMVVAYKVKPITYFIAKRLVK-LPYVSLPNILAGREIVPELIQEDCTPENLARALE 339 (381)
T ss_pred HhhH--HHHhcc-HHHHHHHHhCCCEEEEEeccHHHHHHHHHhcc-CCcccchHHhcCCccchHHHhhhcCHHHHHHHHH
Confidence 6776 555544 35689999999999752111 11233444333 1211 11111 588999999999
Q ss_pred HHhcccc-hHHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHh
Q 046167 379 KLTVDKE-GEFLRQRAAQLKEEVELSTRKGGFSYNSLNELLDLIN 422 (424)
Q Consensus 379 ~ll~~~~-~~~~~~~a~~l~~~~~~~~~~~g~~~~a~~~~~~~~~ 422 (424)
.++.|.. ...+++...++.+.++. ++.++.+++.+++.+.
T Consensus 340 ~ll~~~~~~~~~~~~~~~l~~~l~~----~~~~e~aA~~vl~~~~ 380 (381)
T COG0763 340 ELLLNGDRREALKEKFRELHQYLRE----DPASEIAAQAVLELLL 380 (381)
T ss_pred HHhcChHhHHHHHHHHHHHHHHHcC----CcHHHHHHHHHHHHhc
Confidence 9999952 34566666666666654 2577888888888764
No 115
>KOG3349 consensus Predicted glycosyltransferase [General function prediction only]
Probab=98.25 E-value=6.2e-06 Score=65.51 Aligned_cols=117 Identities=17% Similarity=0.133 Sum_probs=76.5
Q ss_pred eEEEEEeCCcccCCHHHHH-----HHHHHHHhCCC-CeEEEEcCCCCCCCcccccCchhHHHHh-cCCCc--eeeecch-
Q 046167 238 SVIYVSLGSVASMDKKELE-----EMAWGLVNSKQ-PFLWVIRPRTNNAPEGIELLPKVLAEDV-QENGY--IVKWAPQ- 307 (424)
Q Consensus 238 ~~I~vs~Gs~~~~~~~~~~-----~~~~a~~~~~~-~~i~~~~~~~~~~~~~~~~l~~~~~~~~-~~nv~--v~~~ip~- 307 (424)
..+|||.||... .+.+. ..++.+.+.|. +.|+.++.+... .++.+.... .+... ..+|-|.
T Consensus 4 ~~vFVTVGtT~F--d~LI~~Vl~~~~~~~L~k~G~~kLiiQ~Grg~~~-------~~d~~~~~~k~~gl~id~y~f~psl 74 (170)
T KOG3349|consen 4 MTVFVTVGTTSF--DDLISCVLSEEFLQELQKRGFTKLIIQIGRGQPF-------FGDPIDLIRKNGGLTIDGYDFSPSL 74 (170)
T ss_pred eEEEEEeccccH--HHHHHHHcCHHHHHHHHHcCccEEEEEecCCccC-------CCCHHHhhcccCCeEEEEEecCccH
Confidence 489999999873 22222 24566677776 566777554211 223322111 11112 2366776
Q ss_pred hhhhccccccccccccchhhHHHhhhcCCceeecCc----ccchhhHHHHHHhhhhcceecCc
Q 046167 308 KEVLSHVAVGGFWSHCGWNSTLESICEGVPMICMPF----FEDQKVNARYLSHVWGVGLELEH 366 (424)
Q Consensus 308 ~~ll~~~~~~~~i~hgG~~t~~eal~~GvP~v~~P~----~~DQ~~na~~~~~~~G~g~~~~~ 366 (424)
.+..+.+++ ||+|+|.||++|.|..|+|.|+++. -..|-.-|..+++ .|-=..-..
T Consensus 75 ~e~I~~Adl--VIsHAGaGS~letL~l~KPlivVvNd~LMDNHQ~ELA~qL~~-egyL~~C~p 134 (170)
T KOG3349|consen 75 TEDIRSADL--VISHAGAGSCLETLRLGKPLIVVVNDSLMDNHQLELAKQLAE-EGYLYYCTP 134 (170)
T ss_pred HHHHhhccE--EEecCCcchHHHHHHcCCCEEEEeChHhhhhHHHHHHHHHHh-cCcEEEeec
Confidence 446666777 9999999999999999999999996 4568999999988 475444433
No 116
>TIGR02918 accessory Sec system glycosylation protein GtfA. Members of this protein family are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus. Members are associated with glycosylation of serine-rich glycoproteins exported by the accessory Sec system.
Probab=98.21 E-value=0.0006 Score=68.12 Aligned_cols=164 Identities=15% Similarity=0.180 Sum_probs=97.0
Q ss_pred EEEEEeCCcccCCHHHHHHHHHHHHhC---CCCeEE-EEcCCCCCCCcccccCchhHHH-HhcCCCceeeecchhhhhcc
Q 046167 239 VIYVSLGSVASMDKKELEEMAWGLVNS---KQPFLW-VIRPRTNNAPEGIELLPKVLAE-DVQENGYIVKWAPQKEVLSH 313 (424)
Q Consensus 239 ~I~vs~Gs~~~~~~~~~~~~~~a~~~~---~~~~i~-~~~~~~~~~~~~~~~l~~~~~~-~~~~nv~v~~~ip~~~ll~~ 313 (424)
.++++.|+.. +.+.+..+++|+..+ ..++-+ +++.+. + .+.+.+-..+ .+.++|.+.++.+...++..
T Consensus 320 ~~il~vGrl~--~~Kg~~~li~A~~~l~~~~p~~~l~i~G~G~----~-~~~l~~~i~~~~l~~~V~f~G~~~~~~~~~~ 392 (500)
T TIGR02918 320 FSIITASRLA--KEKHIDWLVKAVVKAKKSVPELTFDIYGEGG----E-KQKLQKIINENQAQDYIHLKGHRNLSEVYKD 392 (500)
T ss_pred eEEEEEeccc--cccCHHHHHHHHHHHHhhCCCeEEEEEECch----h-HHHHHHHHHHcCCCCeEEEcCCCCHHHHHHh
Confidence 5566668876 444555556665432 223333 343221 0 0112111111 12467788898887889988
Q ss_pred ccccccccc---cc-hhhHHHhhhcCCceeecCcccchhhHHHHHHhhhhcceecCc---ccc----hHHHHHHHHHHhc
Q 046167 314 VAVGGFWSH---CG-WNSTLESICEGVPMICMPFFEDQKVNARYLSHVWGVGLELEH---ELE----RGAVEKAVRKLTV 382 (424)
Q Consensus 314 ~~~~~~i~h---gG-~~t~~eal~~GvP~v~~P~~~DQ~~na~~~~~~~G~g~~~~~---~~~----~~~L~~ai~~ll~ 382 (424)
+++ +|.- -| .-++.||+++|+|+|+.-.. ..+...++.+ ..|..++. .-+ .+.|+++|.++++
T Consensus 393 adv--~v~pS~~Egfgl~~lEAma~G~PVI~~dv~---~G~~eiI~~g-~nG~lv~~~~~~~d~~~~~~~la~~I~~ll~ 466 (500)
T TIGR02918 393 YEL--YLSASTSEGFGLTLMEAVGSGLGMIGFDVN---YGNPTFIEDN-KNGYLIPIDEEEDDEDQIITALAEKIVEYFN 466 (500)
T ss_pred CCE--EEEcCccccccHHHHHHHHhCCCEEEecCC---CCCHHHccCC-CCEEEEeCCccccchhHHHHHHHHHHHHHhC
Confidence 887 6653 23 46889999999999997431 1345666664 67777762 122 7889999999996
Q ss_pred ccchHHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHhc
Q 046167 383 DKEGEFLRQRAAQLKEEVELSTRKGGFSYNSLNELLDLINK 423 (424)
Q Consensus 383 ~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~a~~~~~~~~~~ 423 (424)
++....+.+++.+.++. -+....++.+.+.+++
T Consensus 467 ~~~~~~~~~~a~~~a~~--------fs~~~v~~~w~~ll~~ 499 (500)
T TIGR02918 467 SNDIDAFHEYSYQIAEG--------FLTANIIEKWKKLVRE 499 (500)
T ss_pred hHHHHHHHHHHHHHHHh--------cCHHHHHHHHHHHHhh
Confidence 53234455555554433 3445677777776665
No 117
>cd04946 GT1_AmsK_like This family is most closely related to the GT1 family of glycosyltransferases. AmsK is involved in the biosynthesis of amylovoran, which functions as a virulence factor. It functions as a glycosyl transferase which transfers galactose from UDP-galactose to a lipid-linked amylovoran-subunit precursor. The members of this family are found mainly in bacteria and Archaea.
Probab=98.17 E-value=4.1e-05 Score=74.84 Aligned_cols=133 Identities=16% Similarity=0.144 Sum_probs=84.1
Q ss_pred CeEEEEEeCCcccCCHHHHHHHHHHHHhC-----CCCeEEEEcCCCCCCCcccccCchhHHHH-----hcCCCceeeecc
Q 046167 237 KSVIYVSLGSVASMDKKELEEMAWGLVNS-----KQPFLWVIRPRTNNAPEGIELLPKVLAED-----VQENGYIVKWAP 306 (424)
Q Consensus 237 ~~~I~vs~Gs~~~~~~~~~~~~~~a~~~~-----~~~~i~~~~~~~~~~~~~~~~l~~~~~~~-----~~~nv~v~~~ip 306 (424)
++..+++.|.... .+.+..+++++.++ +.++.|..-+++. ..+.+.+. ..++|.+.+|++
T Consensus 229 ~~~~il~~Grl~~--~Kg~~~li~a~~~l~~~~p~~~l~~~iiG~g~--------~~~~l~~~~~~~~~~~~V~f~G~v~ 298 (407)
T cd04946 229 DTLRIVSCSYLVP--VKRVDLIIKALAALAKARPSIKIKWTHIGGGP--------LEDTLKELAESKPENISVNFTGELS 298 (407)
T ss_pred CCEEEEEeecccc--ccCHHHHHHHHHHHHHhCCCceEEEEEEeCch--------HHHHHHHHHHhcCCCceEEEecCCC
Confidence 3456667787774 22333444444332 2356665543321 11222211 235678889999
Q ss_pred hhh---hhccccccccccccc----hhhHHHhhhcCCceeecCcccchhhHHHHHHhhhhcceecCcccchHHHHHHHHH
Q 046167 307 QKE---VLSHVAVGGFWSHCG----WNSTLESICEGVPMICMPFFEDQKVNARYLSHVWGVGLELEHELERGAVEKAVRK 379 (424)
Q Consensus 307 ~~~---ll~~~~~~~~i~hgG----~~t~~eal~~GvP~v~~P~~~DQ~~na~~~~~~~G~g~~~~~~~~~~~L~~ai~~ 379 (424)
+.+ ++..++++++|...- ..+++||+++|+|+|+... ......+.++ +.|..+....++++++++|.+
T Consensus 299 ~~e~~~~~~~~~~~v~v~~S~~Eg~p~~llEAma~G~PVIas~v----gg~~e~i~~~-~~G~l~~~~~~~~~la~~I~~ 373 (407)
T cd04946 299 NSEVYKLYKENPVDVFVNLSESEGLPVSIMEAMSFGIPVIATNV----GGTPEIVDNG-GNGLLLSKDPTPNELVSSLSK 373 (407)
T ss_pred hHHHHHHHhhcCCCEEEeCCccccccHHHHHHHHcCCCEEeCCC----CCcHHHhcCC-CcEEEeCCCCCHHHHHHHHHH
Confidence 765 555555555765543 5689999999999999743 4466677763 688877764589999999999
Q ss_pred Hhccc
Q 046167 380 LTVDK 384 (424)
Q Consensus 380 ll~~~ 384 (424)
+++|+
T Consensus 374 ll~~~ 378 (407)
T cd04946 374 FIDNE 378 (407)
T ss_pred HHhCH
Confidence 99984
No 118
>cd04949 GT1_gtfA_like This family is most closely related to the GT1 family of glycosyltransferases and is named after gtfA in Streptococcus gordonii, where it plays a role in the O-linked glycosylation of GspB, a cell surface glycoprotein involved in platelet binding. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltra
Probab=98.16 E-value=9.3e-05 Score=71.30 Aligned_cols=99 Identities=15% Similarity=0.128 Sum_probs=68.3
Q ss_pred cCCCceeeecchh-hhhccccccccccc--cchhhHHHhhhcCCceeecCcccchhhHHHHHHhhhhcceecCcccchHH
Q 046167 296 QENGYIVKWAPQK-EVLSHVAVGGFWSH--CGWNSTLESICEGVPMICMPFFEDQKVNARYLSHVWGVGLELEHELERGA 372 (424)
Q Consensus 296 ~~nv~v~~~ip~~-~ll~~~~~~~~i~h--gG~~t~~eal~~GvP~v~~P~~~DQ~~na~~~~~~~G~g~~~~~~~~~~~ 372 (424)
++++.+.++.++. .++..+++-++.++ |...++.||+++|+|+|+.... ......+..+ ..|..++. .+.++
T Consensus 260 ~~~v~~~g~~~~~~~~~~~ad~~v~~S~~Eg~~~~~lEAma~G~PvI~~~~~---~g~~~~v~~~-~~G~lv~~-~d~~~ 334 (372)
T cd04949 260 EDYVFLKGYTRDLDEVYQKAQLSLLTSQSEGFGLSLMEALSHGLPVISYDVN---YGPSEIIEDG-ENGYLVPK-GDIEA 334 (372)
T ss_pred cceEEEcCCCCCHHHHHhhhhEEEecccccccChHHHHHHhCCCCEEEecCC---CCcHHHcccC-CCceEeCC-CcHHH
Confidence 4677777876654 48888888444444 2356899999999999996432 1245566664 78888876 68999
Q ss_pred HHHHHHHHhcccc-hHHHHHHHHHHHHH
Q 046167 373 VEKAVRKLTVDKE-GEFLRQRAAQLKEE 399 (424)
Q Consensus 373 L~~ai~~ll~~~~-~~~~~~~a~~l~~~ 399 (424)
++++|.++++|++ ...+.+++++.+++
T Consensus 335 la~~i~~ll~~~~~~~~~~~~a~~~~~~ 362 (372)
T cd04949 335 LAEAIIELLNDPKLLQKFSEAAYENAER 362 (372)
T ss_pred HHHHHHHHHcCHHHHHHHHHHHHHHHHH
Confidence 9999999999853 23445555544433
No 119
>cd01635 Glycosyltransferase_GTB_type Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. The structures of the formed glycoconjugates are extremely diverse, reflecting a wide range of biological functions. The members of this family share a common GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=98.12 E-value=0.00021 Score=63.03 Aligned_cols=48 Identities=19% Similarity=0.138 Sum_probs=35.6
Q ss_pred cCCCceeeecchhh----hhccccccccccccc----hhhHHHhhhcCCceeecCccc
Q 046167 296 QENGYIVKWAPQKE----VLSHVAVGGFWSHCG----WNSTLESICEGVPMICMPFFE 345 (424)
Q Consensus 296 ~~nv~v~~~ip~~~----ll~~~~~~~~i~hgG----~~t~~eal~~GvP~v~~P~~~ 345 (424)
.+|+.+.++++..+ ++..+++ +++-.. .+++.||+++|+|+|+.+..+
T Consensus 160 ~~~v~~~~~~~~~~~~~~~~~~~di--~l~~~~~e~~~~~~~Eam~~g~pvi~s~~~~ 215 (229)
T cd01635 160 LDRVIFLGGLDPEELLALLLAAADV--FVLPSLREGFGLVVLEAMACGLPVIATDVGG 215 (229)
T ss_pred cccEEEeCCCCcHHHHHHHhhcCCE--EEecccccCcChHHHHHHhCCCCEEEcCCCC
Confidence 46888888873322 4444666 777766 789999999999999987644
No 120
>PF00534 Glycos_transf_1: Glycosyl transferases group 1; InterPro: IPR001296 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Proteins containign this domain transfer UDP, ADP, GDP or CMP linked sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. The bacterial enzymes are involved in various biosynthetic processes that include exopolysaccharide biosynthesis, lipopolysaccharide core biosynthesis and the biosynthesis of the slime polysaccaride colanic acid. Mutations in this domain of the human N-acetylglucosaminyl-phosphatidylinositol biosynthetic protein are the cause of paroxysmal nocturnal hemoglobinuria (PNH), an acquired hemolytic blood disorder characterised by venous thrombosis, erythrocyte hemolysis, infections and defective hematopoiesis.; GO: 0009058 biosynthetic process; PDB: 2L7C_A 2IV3_B 2IUY_B 2XA9_A 2XA1_B 2X6R_A 2XMP_B 2XA2_B 2X6Q_A 3QHP_B ....
Probab=98.09 E-value=7.1e-06 Score=69.77 Aligned_cols=81 Identities=23% Similarity=0.276 Sum_probs=63.8
Q ss_pred hcCCCceeeecchh---hhhccccccccccc----cchhhHHHhhhcCCceeecCcccchhhHHHHHHhhhhcceecCcc
Q 046167 295 VQENGYIVKWAPQK---EVLSHVAVGGFWSH----CGWNSTLESICEGVPMICMPFFEDQKVNARYLSHVWGVGLELEHE 367 (424)
Q Consensus 295 ~~~nv~v~~~ip~~---~ll~~~~~~~~i~h----gG~~t~~eal~~GvP~v~~P~~~DQ~~na~~~~~~~G~g~~~~~~ 367 (424)
..+++.+.+++++. .++..+++ +|+. |...++.||+++|+|+|+. +-..+...+... +.|..++.
T Consensus 71 ~~~~i~~~~~~~~~~l~~~~~~~di--~v~~s~~e~~~~~~~Ea~~~g~pvI~~----~~~~~~e~~~~~-~~g~~~~~- 142 (172)
T PF00534_consen 71 LKENIIFLGYVPDDELDELYKSSDI--FVSPSRNEGFGLSLLEAMACGCPVIAS----DIGGNNEIINDG-VNGFLFDP- 142 (172)
T ss_dssp CGTTEEEEESHSHHHHHHHHHHTSE--EEE-BSSBSS-HHHHHHHHTT-EEEEE----SSTHHHHHSGTT-TSEEEEST-
T ss_pred cccccccccccccccccccccccee--ccccccccccccccccccccccceeec----cccCCceeeccc-cceEEeCC-
Confidence 44688888999833 38877777 7766 5677999999999999986 456777788774 77888888
Q ss_pred cchHHHHHHHHHHhcc
Q 046167 368 LERGAVEKAVRKLTVD 383 (424)
Q Consensus 368 ~~~~~L~~ai~~ll~~ 383 (424)
.+.+++.++|.+++++
T Consensus 143 ~~~~~l~~~i~~~l~~ 158 (172)
T PF00534_consen 143 NDIEELADAIEKLLND 158 (172)
T ss_dssp TSHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHCC
Confidence 5999999999999998
No 121
>PRK14099 glycogen synthase; Provisional
Probab=98.06 E-value=0.0021 Score=64.15 Aligned_cols=116 Identities=13% Similarity=0.089 Sum_probs=61.0
Q ss_pred cCCC-ceeeecchhh-hh-ccccccccccc---cch-hhHHHhhhcCCceeecCccc--chhhHHHHH-Hhh-hhcceec
Q 046167 296 QENG-YIVKWAPQKE-VL-SHVAVGGFWSH---CGW-NSTLESICEGVPMICMPFFE--DQKVNARYL-SHV-WGVGLEL 364 (424)
Q Consensus 296 ~~nv-~v~~~ip~~~-ll-~~~~~~~~i~h---gG~-~t~~eal~~GvP~v~~P~~~--DQ~~na~~~-~~~-~G~g~~~ 364 (424)
++++ .+.++-.... ++ +.+++ |+.- =|. .+.+||+++|+|.|+....+ |.-...... +.. -+.|..+
T Consensus 349 ~~~v~~~~G~~~~l~~~~~a~aDi--fv~PS~~E~fGl~~lEAma~G~ppVvs~~GGl~d~V~~~~~~~~~~~~~~G~l~ 426 (485)
T PRK14099 349 PGQIGVVIGYDEALAHLIQAGADA--LLVPSRFEPCGLTQLCALRYGAVPVVARVGGLADTVVDANEMAIATGVATGVQF 426 (485)
T ss_pred CCCEEEEeCCCHHHHHHHHhcCCE--EEECCccCCCcHHHHHHHHCCCCcEEeCCCCccceeecccccccccCCCceEEe
Confidence 4454 3456633222 33 34566 6642 333 46789999998777764422 221111000 000 0467777
Q ss_pred CcccchHHHHHHHHH---HhcccchHHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHhc
Q 046167 365 EHELERGAVEKAVRK---LTVDKEGEFLRQRAAQLKEEVELSTRKGGFSYNSLNELLDLINK 423 (424)
Q Consensus 365 ~~~~~~~~L~~ai~~---ll~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~a~~~~~~~~~~ 423 (424)
+. .+++.|.++|.+ +++| +..+++..+ ..... .-+-.+.++++++.+++
T Consensus 427 ~~-~d~~~La~ai~~a~~l~~d---~~~~~~l~~---~~~~~---~fSw~~~a~~y~~lY~~ 478 (485)
T PRK14099 427 SP-VTADALAAALRKTAALFAD---PVAWRRLQR---NGMTT---DVSWRNPAQHYAALYRS 478 (485)
T ss_pred CC-CCHHHHHHHHHHHHHHhcC---HHHHHHHHH---Hhhhh---cCChHHHHHHHHHHHHH
Confidence 76 689999999997 6666 333332222 22111 13445566666665543
No 122
>PF13844 Glyco_transf_41: Glycosyl transferase family 41; PDB: 3PE4_C 3PE3_D 3TAX_C 2XGO_A 2JLB_B 2XGM_A 2VSY_B 2XGS_B 2VSN_A.
Probab=98.03 E-value=0.00015 Score=70.45 Aligned_cols=177 Identities=19% Similarity=0.211 Sum_probs=96.8
Q ss_pred CCCeEEEEEeCCcccCCHHHHHHHHHHHHhCCCCeEEEEcCCCCCCCcccccCchhHHHH--hcCCCceeeecchhh---
Q 046167 235 SPKSVIYVSLGSVASMDKKELEEMAWGLVNSKQPFLWVIRPRTNNAPEGIELLPKVLAED--VQENGYIVKWAPQKE--- 309 (424)
Q Consensus 235 ~~~~~I~vs~Gs~~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~--~~~nv~v~~~ip~~~--- 309 (424)
+++.++|.+|.......++.++.-.+.+++.+.-.+|..+.+. .+ ...+...+.+. .++++.+.++.|..+
T Consensus 282 p~d~vvF~~fn~~~KI~p~~l~~W~~IL~~vP~S~L~L~~~~~-~~---~~~l~~~~~~~Gv~~~Ri~f~~~~~~~ehl~ 357 (468)
T PF13844_consen 282 PEDAVVFGSFNNLFKISPETLDLWARILKAVPNSRLWLLRFPA-SG---EARLRRRFAAHGVDPDRIIFSPVAPREEHLR 357 (468)
T ss_dssp -SSSEEEEE-S-GGG--HHHHHHHHHHHHHSTTEEEEEEETST-TH---HHHHHHHHHHTTS-GGGEEEEE---HHHHHH
T ss_pred CCCceEEEecCccccCCHHHHHHHHHHHHhCCCcEEEEeeCCH-HH---HHHHHHHHHHcCCChhhEEEcCCCCHHHHHH
Confidence 4567999999999989999999999999999888888875432 11 11122222110 126677778777655
Q ss_pred hhcccccccc---ccccchhhHHHhhhcCCceeecCccc-chhhHHHHHHhhhhcceecCcccchHHHHHHHHHHhcccc
Q 046167 310 VLSHVAVGGF---WSHCGWNSTLESICEGVPMICMPFFE-DQKVNARYLSHVWGVGLELEHELERGAVEKAVRKLTVDKE 385 (424)
Q Consensus 310 ll~~~~~~~~---i~hgG~~t~~eal~~GvP~v~~P~~~-DQ~~na~~~~~~~G~g~~~~~~~~~~~L~~ai~~ll~~~~ 385 (424)
.+..+|+ + ...+|.+|++|||+.|||+|..|--. =...-+..+.. +|+.-.+-. +.++-.+.--++-+|.
T Consensus 358 ~~~~~DI--~LDT~p~nG~TTt~dALwmGVPvVTl~G~~~~sR~~aSiL~~-lGl~ElIA~--s~~eYv~~Av~La~D~- 431 (468)
T PF13844_consen 358 RYQLADI--CLDTFPYNGGTTTLDALWMGVPVVTLPGETMASRVGASILRA-LGLPELIAD--SEEEYVEIAVRLATDP- 431 (468)
T ss_dssp HGGG-SE--EE--SSS--SHHHHHHHHHT--EEB---SSGGGSHHHHHHHH-HT-GGGB-S--SHHHHHHHHHHHHH-H-
T ss_pred HhhhCCE--EeeCCCCCCcHHHHHHHHcCCCEEeccCCCchhHHHHHHHHH-cCCchhcCC--CHHHHHHHHHHHhCCH-
Confidence 3334444 3 35678999999999999999998522 23444556666 688765554 7777777777777773
Q ss_pred hHHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHhcC
Q 046167 386 GEFLRQRAAQLKEEVELSTRKGGFSYNSLNELLDLINKF 424 (424)
Q Consensus 386 ~~~~~~~a~~l~~~~~~~~~~~g~~~~a~~~~~~~~~~~ 424 (424)
+..++--++++++..+. .-.+..+.+.++++.+++|
T Consensus 432 -~~l~~lR~~Lr~~~~~S--pLfd~~~~ar~lE~a~~~m 467 (468)
T PF13844_consen 432 -ERLRALRAKLRDRRSKS--PLFDPKRFARNLEAAYRQM 467 (468)
T ss_dssp -HHHHHHHHHHHHHHHHS--GGG-HHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHhhC--CCCCHHHHHHHHHHHHHHh
Confidence 22222222333332211 1235567788888877653
No 123
>PLN02939 transferase, transferring glycosyl groups
Probab=97.99 E-value=0.0017 Score=68.12 Aligned_cols=82 Identities=9% Similarity=0.030 Sum_probs=55.1
Q ss_pred CCCceeeecchh---hhhcccccccccccc---c-hhhHHHhhhcCCceeecCccc--chhhH--HHHH-Hhhhhcceec
Q 046167 297 ENGYIVKWAPQK---EVLSHVAVGGFWSHC---G-WNSTLESICEGVPMICMPFFE--DQKVN--ARYL-SHVWGVGLEL 364 (424)
Q Consensus 297 ~nv~v~~~ip~~---~ll~~~~~~~~i~hg---G-~~t~~eal~~GvP~v~~P~~~--DQ~~n--a~~~-~~~~G~g~~~ 364 (424)
++|.+.++.+.. .+++.+++ ||.-+ | ..+.+||+++|+|.|+....| |.-.+ ...+ +.. +-|..+
T Consensus 837 drV~FlG~~de~lah~IYAaADI--FLmPSr~EPfGLvqLEAMAyGtPPVVs~vGGL~DtV~d~d~e~i~~eg-~NGfLf 913 (977)
T PLN02939 837 NNIRLILKYDEALSHSIYAASDM--FIIPSMFEPCGLTQMIAMRYGSVPIVRKTGGLNDSVFDFDDETIPVEL-RNGFTF 913 (977)
T ss_pred CeEEEEeccCHHHHHHHHHhCCE--EEECCCccCCcHHHHHHHHCCCCEEEecCCCCcceeecCCccccccCC-CceEEe
Confidence 578888888764 48877777 77532 2 457899999999999876644 22111 1111 222 567777
Q ss_pred CcccchHHHHHHHHHHhc
Q 046167 365 EHELERGAVEKAVRKLTV 382 (424)
Q Consensus 365 ~~~~~~~~L~~ai~~ll~ 382 (424)
+. .+++.|.++|.+++.
T Consensus 914 ~~-~D~eaLa~AL~rAL~ 930 (977)
T PLN02939 914 LT-PDEQGLNSALERAFN 930 (977)
T ss_pred cC-CCHHHHHHHHHHHHH
Confidence 66 689999999988764
No 124
>COG0381 WecB UDP-N-acetylglucosamine 2-epimerase [Cell envelope biogenesis, outer membrane]
Probab=97.86 E-value=0.00049 Score=64.36 Aligned_cols=348 Identities=14% Similarity=0.096 Sum_probs=172.6
Q ss_pred ceEEEEcCCCccChHHHHHHHHHHHhCC-CeEEEEeCCCCC--CCCCCCCCceEEeCC-CCCCCCc-cccccHHHHHHHH
Q 046167 9 RRVVLVPSPHQGHINPMLQLGTILHSKG-FSITVVHTQFNS--PNPSNHPEFEFQSIP-DGLMDVN-ISARNLVDSILLL 83 (424)
Q Consensus 9 ~ril~~~~~~~GH~~p~~~la~~L~~~G-h~V~~~~~~~~~--~~~~~~~g~~~~~~~-~~~~~~~-~~~~~~~~~~~~~ 83 (424)
+||++ -+|+.=.+.-+.+|.+++.+.+ .+..++.+.-.. +... ..++...++ +...-.. ....+..+.....
T Consensus 4 ~Kv~~-I~GTRPE~iKmapli~~~~~~~~~~~~vi~TGQH~d~em~~--~~le~~~i~~pdy~L~i~~~~~tl~~~t~~~ 80 (383)
T COG0381 4 LKVLT-IFGTRPEAIKMAPLVKALEKDPDFELIVIHTGQHRDYEMLD--QVLELFGIRKPDYDLNIMKPGQTLGEITGNI 80 (383)
T ss_pred eEEEE-EEecCHHHHHHhHHHHHHHhCCCCceEEEEecccccHHHHH--HHHHHhCCCCCCcchhccccCCCHHHHHHHH
Confidence 35544 4568899999999999999997 666555553111 1100 001111111 0110000 1122333332222
Q ss_pred HHhchhHHHHHHHHHHhhcCCCCCceEEEecC--cc-chHHHHHHHhCCceEEEecchHHHHHHHHhhhcccccCCCCCC
Q 046167 84 NENCREPFRNWLVQMIKEQQPGDEIVCIIYDE--VM-YFAEASASQLNVQSIILRTSGAVTVVARLVLFQLKEEGYNPLK 160 (424)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~pDlvi~d~--~~-~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 160 (424)
-..+.+++++. +||+|+... .. .++..+|.+++||+.-+...--+. ..++|..
T Consensus 81 ----i~~~~~vl~~~--------kPD~VlVhGDT~t~lA~alaa~~~~IpV~HvEAGlRt~------------~~~~PEE 136 (383)
T COG0381 81 ----IEGLSKVLEEE--------KPDLVLVHGDTNTTLAGALAAFYLKIPVGHVEAGLRTG------------DLYFPEE 136 (383)
T ss_pred ----HHHHHHHHHhh--------CCCEEEEeCCcchHHHHHHHHHHhCCceEEEecccccC------------CCCCcHH
Confidence 23344455555 899988853 22 666789999999998775542211 1111211
Q ss_pred hhHHHHHHHhhhccCCceEEecChhhhhHHHHHHHHhccCCC-eeeecccccCCCCCCCCCcccccccccc-cccCCCCe
Q 046167 161 ESYVQLINNAYSARTSSAVISNTIYCLEESVLSQLQQYFKVP-NFPIGPLHKFAPSSNGSLLKEDTSCISW-LNNQSPKS 238 (424)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~vGp~~~~~~~~~~~~~~~~~~l~~~-l~~~~~~~ 238 (424)
+.|.-...-++..+.++-. ..-...++..++. ++.+|....+.-..-......+...... +. ...+.
T Consensus 137 ------~NR~l~~~~S~~hfapte~----ar~nLl~EG~~~~~IfvtGnt~iDal~~~~~~~~~~~~~~~~~~~-~~~~~ 205 (383)
T COG0381 137 ------INRRLTSHLSDLHFAPTEI----ARKNLLREGVPEKRIFVTGNTVIDALLNTRDRVLEDSKILAKGLD-DKDKK 205 (383)
T ss_pred ------HHHHHHHHhhhhhcCChHH----HHHHHHHcCCCccceEEeCChHHHHHHHHHhhhccchhhHHhhhc-cccCc
Confidence 0110001112222222211 1112333334333 6667753322110000001111111111 12 23355
Q ss_pred EEEEEeCCcccCCHHHHHHHHH----HHHhCCCCeEEEEcCCCCCCCcccccCchhHHHHhc--CCCcee---eecchhh
Q 046167 239 VIYVSLGSVASMDKKELEEMAW----GLVNSKQPFLWVIRPRTNNAPEGIELLPKVLAEDVQ--ENGYIV---KWAPQKE 309 (424)
Q Consensus 239 ~I~vs~Gs~~~~~~~~~~~~~~----a~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~--~nv~v~---~~ip~~~ 309 (424)
.|.+|+=...... +-+..+++ .+++. ..+.+++..+.+ . ...+-....+. +|+.+. ++.+...
T Consensus 206 ~iLvT~HRreN~~-~~~~~i~~al~~i~~~~-~~~~viyp~H~~-~-----~v~e~~~~~L~~~~~v~li~pl~~~~f~~ 277 (383)
T COG0381 206 YILVTAHRRENVG-EPLEEICEALREIAEEY-PDVIVIYPVHPR-P-----RVRELVLKRLKNVERVKLIDPLGYLDFHN 277 (383)
T ss_pred EEEEEcchhhccc-ccHHHHHHHHHHHHHhC-CCceEEEeCCCC-h-----hhhHHHHHHhCCCCcEEEeCCcchHHHHH
Confidence 8888765444322 33344444 34444 344445533321 0 01111112344 346765 5667777
Q ss_pred hhccccccccccccchhhHHHhhhcCCceeecCcccchhhHHHHHHhhhhcceecCcccchHHHHHHHHHHhcccchHHH
Q 046167 310 VLSHVAVGGFWSHCGWNSTLESICEGVPMICMPFFEDQKVNARYLSHVWGVGLELEHELERGAVEKAVRKLTVDKEGEFL 389 (424)
Q Consensus 310 ll~~~~~~~~i~hgG~~t~~eal~~GvP~v~~P~~~DQ~~na~~~~~~~G~g~~~~~~~~~~~L~~ai~~ll~~~~~~~~ 389 (424)
++.++.+ +++-+|. -.-||-..|+|.+++=..-||+. +++. |.-+.+. .+.+.+.+++..++++ +..
T Consensus 278 L~~~a~~--iltDSGg-iqEEAp~lg~Pvl~lR~~TERPE---~v~a--gt~~lvg--~~~~~i~~~~~~ll~~---~~~ 344 (383)
T COG0381 278 LMKNAFL--ILTDSGG-IQEEAPSLGKPVLVLRDTTERPE---GVEA--GTNILVG--TDEENILDAATELLED---EEF 344 (383)
T ss_pred HHHhceE--EEecCCc-hhhhHHhcCCcEEeeccCCCCcc---ceec--CceEEeC--ccHHHHHHHHHHHhhC---hHH
Confidence 9988877 8887663 45799999999999977777776 3332 4444444 5889999999999999 555
Q ss_pred HHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHhc
Q 046167 390 RQRAAQLKEEVELSTRKGGFSYNSLNELLDLINK 423 (424)
Q Consensus 390 ~~~a~~l~~~~~~~~~~~g~~~~a~~~~~~~~~~ 423 (424)
.++...... .. |+.. +.+++++.|.+
T Consensus 345 ~~~m~~~~n---pY----gdg~-as~rIv~~l~~ 370 (383)
T COG0381 345 YERMSNAKN---PY----GDGN-ASERIVEILLN 370 (383)
T ss_pred HHHHhcccC---CC----cCcc-hHHHHHHHHHH
Confidence 554443322 22 3332 56666665543
No 125
>COG5017 Uncharacterized conserved protein [Function unknown]
Probab=97.84 E-value=0.00013 Score=56.98 Aligned_cols=125 Identities=16% Similarity=0.127 Sum_probs=78.1
Q ss_pred EEEEeCCcccCCHHHHHH--HHHHHHhCCCCeEEEEcCCCCCCCcccccCchhHHHHhcCCCceeeec--ch-hhhhccc
Q 046167 240 IYVSLGSVASMDKKELEE--MAWGLVNSKQPFLWVIRPRTNNAPEGIELLPKVLAEDVQENGYIVKWA--PQ-KEVLSHV 314 (424)
Q Consensus 240 I~vs~Gs~~~~~~~~~~~--~~~a~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~nv~v~~~i--p~-~~ll~~~ 314 (424)
||||.||....-...+.. +.+-.+....++|+.++.+. ..| +.+ .++.+|. +. ..+...+
T Consensus 2 ifVTvGstf~~f~rlv~k~e~~el~~~i~e~lIvQyGn~d--------~kp------vag-l~v~~F~~~~kiQsli~da 66 (161)
T COG5017 2 IFVTVGSTFYPFNRLVLKIEVLELTELIQEELIVQYGNGD--------IKP------VAG-LRVYGFDKEEKIQSLIHDA 66 (161)
T ss_pred eEEEecCccchHHHHHhhHHHHHHHHHhhhheeeeecCCC--------ccc------ccc-cEEEeechHHHHHHHhhcc
Confidence 789999985411122221 22223333457888885532 122 011 2455554 32 2366666
Q ss_pred cccccccccchhhHHHhhhcCCceeecCccc--------chhhHHHHHHhhhhcceecCc-cc-chHHHHHHHHHHhc
Q 046167 315 AVGGFWSHCGWNSTLESICEGVPMICMPFFE--------DQKVNARYLSHVWGVGLELEH-EL-ERGAVEKAVRKLTV 382 (424)
Q Consensus 315 ~~~~~i~hgG~~t~~eal~~GvP~v~~P~~~--------DQ~~na~~~~~~~G~g~~~~~-~~-~~~~L~~ai~~ll~ 382 (424)
++ +|+|+|.||++.++..++|.|++|... .|-..|..+.+ ++.-....+ +. -.+.|......++.
T Consensus 67 rI--VISHaG~GSIL~~~rl~kplIv~pr~s~y~elvDdHQvela~klae-~~~vv~~spte~~L~a~l~~s~~~v~~ 141 (161)
T COG5017 67 RI--VISHAGEGSILLLLRLDKPLIVVPRSSQYQELVDDHQVELALKLAE-INYVVACSPTELVLQAGLQVSVADVLH 141 (161)
T ss_pred eE--EEeccCcchHHHHhhcCCcEEEEECchhHHHhhhhHHHHHHHHHHh-cCceEEEcCCchhhHHhHhhhhhhhcC
Confidence 76 999999999999999999999999743 47888888888 687777765 22 33444555555553
No 126
>PRK10017 colanic acid biosynthesis protein; Provisional
Probab=97.72 E-value=0.056 Score=52.83 Aligned_cols=346 Identities=12% Similarity=0.108 Sum_probs=168.9
Q ss_pred ceEEEEcCCC---ccChHHHHHHHHHHHhC--CCeEEEEeCCCCCCCCCCCCCceEEeCCCCCCCCcccccc-------H
Q 046167 9 RRVVLVPSPH---QGHINPMLQLGTILHSK--GFSITVVHTQFNSPNPSNHPEFEFQSIPDGLMDVNISARN-------L 76 (424)
Q Consensus 9 ~ril~~~~~~---~GH~~p~~~la~~L~~~--Gh~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-------~ 76 (424)
|||+++-.-| .|+=-=+.++...|.++ +.++++++..+...... +.-..+++.+-.......+ .
T Consensus 1 ~~i~i~G~~g~~N~GdeAil~~ii~~l~~~~p~~~i~v~S~~P~~t~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~v 76 (426)
T PRK10017 1 MKLLILGNHTCGNRGDSAILRGLLDAINILNPHAEVDVMSRYPVSSSWL----LNRPVMGDPLFLQMKQHNSAAGVVGRV 76 (426)
T ss_pred CeEEEEccccCCCccHHHHHHHHHHHHHhhCCCCeEEEEecCccchhhh----cccccccchhhhhhhhcccccccchhH
Confidence 4777776443 36766677899999997 58999998853332200 0001111111000000000 1
Q ss_pred HHHHH--H----HHH-----------hchhHHHHHHHHHHhhcCCCCCceEEEecCccc----------hHHHHHHHhCC
Q 046167 77 VDSIL--L----LNE-----------NCREPFRNWLVQMIKEQQPGDEIVCIIYDEVMY----------FAEASASQLNV 129 (424)
Q Consensus 77 ~~~~~--~----~~~-----------~~~~~~~~~~~~~~~~~~~~~~pDlvi~d~~~~----------~~~~~A~~lgi 129 (424)
..... . ++. .....+.+.++.++ +.|++|...... .-..+|+.+|.
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-------~aDlvI~gGG~lfqD~y~~~~~~y~l~A~l~gk 149 (426)
T PRK10017 77 KKVLRRRYQHQVLLSRVTDTGKLRNIAIAQGFTDFVRLLS-------GYDAIIQVGGSFFVDLYGVPQFEHALCAFMAKK 149 (426)
T ss_pred HHHHHhhhhHHHHHhhhccccccccccchhhHHHHHHHHH-------hCCEEEECCCCccccCcccHHHHHHHHHHHcCC
Confidence 11111 0 000 01123444555665 689998854331 12457889999
Q ss_pred ceEEEecchHHHHHHHHhhhcccccCCCCCChhHHHHHHHhhhccCCceEEecChhhhhHHHHHHHHhccCC---Ceeee
Q 046167 130 QSIILRTSGAVTVVARLVLFQLKEEGYNPLKESYVQLINNAYSARTSSAVISNTIYCLEESVLSQLQQYFKV---PNFPI 206 (424)
Q Consensus 130 P~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~---~~~~v 206 (424)
|++.+..+.. |......+.+.+ ....+++.+.++.-.. .+++.. ++. ++..+
T Consensus 150 pv~l~gqsiG------------------Pf~~~~~r~l~r-~vl~~~~~ItvRD~~S-----~~~Lk~-lGv~~~~v~~~ 204 (426)
T PRK10017 150 PLYMIGHSVG------------------PFQDEQFNQLAN-YVFGHCDALILRESVS-----LDLMKR-SNITTAKVEHG 204 (426)
T ss_pred CEEEECCcCC------------------CcCCHHHHHHHH-HHHhcCCEEEEccHHH-----HHHHHH-hCCCccceEEe
Confidence 9887755421 112111122211 2245677777764322 222222 222 23322
Q ss_pred c-ccccCCCCCCCCCcccccccccccccCCCCeEEEEEeCCccc----------CCHHHHHHHHHHHHhCCCCeEEEEcC
Q 046167 207 G-PLHKFAPSSNGSLLKEDTSCISWLNNQSPKSVIYVSLGSVAS----------MDKKELEEMAWGLVNSKQPFLWVIRP 275 (424)
Q Consensus 207 G-p~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~I~vs~Gs~~~----------~~~~~~~~~~~a~~~~~~~~i~~~~~ 275 (424)
. |.+.-.+. ..... ....+..|+.....+++|.|+...... ...+.+..+++.+.+.+++++++.-.
T Consensus 205 aDpAF~L~~~-~~~~~-~~~~~~~~~~~~~~~~~Vgisvr~~~~~~~~~~~~~~~Y~~~la~~i~~Li~~g~~Vv~lp~~ 282 (426)
T PRK10017 205 VDTAWLVDHH-TEDFT-ASYAVQHWLDVAAQQKTVAITLRELAPFDKRLGTTQQAYEKAFAGVVNRIIDEGYQVIALSTC 282 (426)
T ss_pred cChhhhCCcc-ccccc-cchhhhhhhcccccCCEEEEEecccccccccccccHHHHHHHHHHHHHHHHHCCCeEEEEecc
Confidence 2 32222111 00000 111123455433445688888654331 01233444556565568887766532
Q ss_pred CCC--CCCcccccCchhHHHHhc--CCCcee--eecchh--hhhccccccccccccchhhHHHhhhcCCceeecCcccch
Q 046167 276 RTN--NAPEGIELLPKVLAEDVQ--ENGYIV--KWAPQK--EVLSHVAVGGFWSHCGWNSTLESICEGVPMICMPFFEDQ 347 (424)
Q Consensus 276 ~~~--~~~~~~~~l~~~~~~~~~--~nv~v~--~~ip~~--~ll~~~~~~~~i~hgG~~t~~eal~~GvP~v~~P~~~DQ 347 (424)
.+. .+.. -......+.+.++ +++++. ++-|.. .+++++++ +|..= .=++.-|+..|+|.|.++- |.
T Consensus 283 ~~~~~~~~d-D~~~~~~l~~~~~~~~~~~vi~~~~~~~e~~~iIs~~dl--~ig~R-lHa~I~a~~~gvP~i~i~Y--~~ 356 (426)
T PRK10017 283 TGIDSYNKD-DRMVALNLRQHVSDPARYHVVMDELNDLEMGKILGACEL--TVGTR-LHSAIISMNFGTPAIAINY--EH 356 (426)
T ss_pred cCccCCCCc-hHHHHHHHHHhcccccceeEecCCCChHHHHHHHhhCCE--EEEec-chHHHHHHHcCCCEEEeee--hH
Confidence 110 0000 0001122323333 233433 222333 47766665 77532 3345567889999999987 44
Q ss_pred hhHHHHHHhhhhccee-cCc-ccchHHHHHHHHHHhcccchHHHHHHHHHHHHHHHH
Q 046167 348 KVNARYLSHVWGVGLE-LEH-ELERGAVEKAVRKLTVDKEGEFLRQRAAQLKEEVEL 402 (424)
Q Consensus 348 ~~na~~~~~~~G~g~~-~~~-~~~~~~L~~ai~~ll~~~~~~~~~~~a~~l~~~~~~ 402 (424)
. ....+.. +|..-. .+. +++.++|.+.++++++|. +.++++.++--++.+.
T Consensus 357 K-~~~~~~~-lg~~~~~~~~~~l~~~~Li~~v~~~~~~r--~~~~~~l~~~v~~~r~ 409 (426)
T PRK10017 357 K-SAGIMQQ-LGLPEMAIDIRHLLDGSLQAMVADTLGQL--PALNARLAEAVSRERQ 409 (426)
T ss_pred H-HHHHHHH-cCCccEEechhhCCHHHHHHHHHHHHhCH--HHHHHHHHHHHHHHHH
Confidence 3 3344466 787755 444 789999999999999997 4555555555555543
No 127
>COG1817 Uncharacterized protein conserved in archaea [Function unknown]
Probab=97.72 E-value=0.0035 Score=56.64 Aligned_cols=110 Identities=16% Similarity=0.103 Sum_probs=71.3
Q ss_pred CCCccChHHHHHHHHHHHhCCCeEEEEeCCCCCCC-CCCCCCceEEeCCCCCCCCccccccHHHHHHHHHHhchhHHHHH
Q 046167 16 SPHQGHINPMLQLGTILHSKGFSITVVHTQFNSPN-PSNHPEFEFQSIPDGLMDVNISARNLVDSILLLNENCREPFRNW 94 (424)
Q Consensus 16 ~~~~GH~~p~~~la~~L~~~Gh~V~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (424)
.+..-|+.=+..+-.+|+++||+|.+.|.++.... .-+.-|+.+..+.+.- ...+.+.+...... ...+.++
T Consensus 7 I~n~~hvhfFk~lI~elekkG~ev~iT~rd~~~v~~LLd~ygf~~~~Igk~g------~~tl~~Kl~~~~eR-~~~L~ki 79 (346)
T COG1817 7 IGNPPHVHFFKNLIWELEKKGHEVLITCRDFGVVTELLDLYGFPYKSIGKHG------GVTLKEKLLESAER-VYKLSKI 79 (346)
T ss_pred cCCcchhhHHHHHHHHHHhCCeEEEEEEeecCcHHHHHHHhCCCeEeecccC------CccHHHHHHHHHHH-HHHHHHH
Confidence 34556777788999999999999999998755543 2233678888877321 11222222222110 1112223
Q ss_pred HHHHHhhcCCCCCceEEEecCccchHHHHHHHhCCceEEEecchHHH
Q 046167 95 LVQMIKEQQPGDEIVCIIYDEVMYFAEASASQLNVQSIILRTSGAVT 141 (424)
Q Consensus 95 ~~~~~~~~~~~~~pDlvi~d~~~~~~~~~A~~lgiP~v~~~~~~~~~ 141 (424)
...+ +||+.+. -.++-.+.+|.-+|+|.+.+..+.-..
T Consensus 80 ~~~~--------kpdv~i~-~~s~~l~rvafgLg~psIi~~D~ehA~ 117 (346)
T COG1817 80 IAEF--------KPDVAIG-KHSPELPRVAFGLGIPSIIFVDNEHAE 117 (346)
T ss_pred Hhhc--------CCceEee-cCCcchhhHHhhcCCceEEecCChhHH
Confidence 3333 8999999 457889999999999999987665433
No 128
>PRK09814 beta-1,6-galactofuranosyltransferase; Provisional
Probab=97.60 E-value=0.00028 Score=66.99 Aligned_cols=112 Identities=15% Similarity=0.268 Sum_probs=81.6
Q ss_pred hcCCCceeeecchhhh---hcccccccccccc-------------chhhHHHhhhcCCceeecCcccchhhHHHHHHhhh
Q 046167 295 VQENGYIVKWAPQKEV---LSHVAVGGFWSHC-------------GWNSTLESICEGVPMICMPFFEDQKVNARYLSHVW 358 (424)
Q Consensus 295 ~~~nv~v~~~ip~~~l---l~~~~~~~~i~hg-------------G~~t~~eal~~GvP~v~~P~~~DQ~~na~~~~~~~ 358 (424)
..+||.+.+|+|+.++ |.. +.+++...- -.+-+.+++++|+|+|+. ++...+..+++.
T Consensus 205 ~~~~V~f~G~~~~eel~~~l~~-~~gLv~~~~~~~~~~~~y~~~~~P~K~~~ymA~G~PVI~~----~~~~~~~~V~~~- 278 (333)
T PRK09814 205 NSANISYKGWFDPEELPNELSK-GFGLVWDGDTNDGEYGEYYKYNNPHKLSLYLAAGLPVIVW----SKAAIADFIVEN- 278 (333)
T ss_pred cCCCeEEecCCCHHHHHHHHhc-CcCeEEcCCCCCccchhhhhccchHHHHHHHHCCCCEEEC----CCccHHHHHHhC-
Confidence 4478899999998874 433 333332211 134578899999999996 557788999995
Q ss_pred hcceecCcccchHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHH
Q 046167 359 GVGLELEHELERGAVEKAVRKLTVDKEGEFLRQRAAQLKEEVELSTRKGGFSYNSLNELLDL 420 (424)
Q Consensus 359 G~g~~~~~~~~~~~L~~ai~~ll~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~a~~~~~~~ 420 (424)
++|..++ +.+++.++++++. +++...++++++++++++++. ....+|+++++..
T Consensus 279 ~~G~~v~---~~~el~~~l~~~~-~~~~~~m~~n~~~~~~~~~~g----~~~~~~~~~~~~~ 332 (333)
T PRK09814 279 GLGFVVD---SLEELPEIIDNIT-EEEYQEMVENVKKISKLLRNG----YFTKKALVDAIKE 332 (333)
T ss_pred CceEEeC---CHHHHHHHHHhcC-HHHHHHHHHHHHHHHHHHhcc----hhHHHHHHHHHhc
Confidence 9999987 5678999998864 333467899999999999864 5666777777653
No 129
>TIGR02193 heptsyl_trn_I lipopolysaccharide heptosyltransferase I. This family consists of examples of ADP-heptose:LPS heptosyltransferase I, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=97.52 E-value=0.0071 Score=56.98 Aligned_cols=304 Identities=12% Similarity=0.048 Sum_probs=148.9
Q ss_pred eEEEEcCCCccChHHHHHHHHHHHhC--CCeEEEEeCCCCCCCCCCCCCce-EEeCCCCCCCCccccccHHHHHHHHHHh
Q 046167 10 RVVLVPSPHQGHINPMLQLGTILHSK--GFSITVVHTQFNSPNPSNHPEFE-FQSIPDGLMDVNISARNLVDSILLLNEN 86 (424)
Q Consensus 10 ril~~~~~~~GH~~p~~~la~~L~~~--Gh~V~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (424)
|||++-....|++.-..++.++|+++ +.+|++++.+.........+.+. ++.++.. .. .... +. ..
T Consensus 1 ~ILiir~~~iGD~vl~~p~l~~Lr~~~P~a~I~~l~~~~~~~~~~~~p~vd~v~~~~~~-~~----~~~~---~~---~~ 69 (319)
T TIGR02193 1 RILIVKTSSLGDVIHTLPALTDIKRALPDVEIDWVVEEGFADIVRLHPAVDEVIPVALR-RW----RKTL---FS---AA 69 (319)
T ss_pred CEEEEecccHHHHHHHHHHHHHHHHhCCCCEEEEEEChhHhhhhhcCCCccEEEEechh-hh----hhcc---cc---ch
Confidence 68899999999999999999999998 99999999976666655556664 4544411 00 0000 00 00
Q ss_pred chhHHHHHHHHHHhhcCCCCCceEEEecCccchHHHHHHHhCCceEEEecchHH-HHHHHHhhhcccccCCCCCChhHHH
Q 046167 87 CREPFRNWLVQMIKEQQPGDEIVCIIYDEVMYFAEASASQLNVQSIILRTSGAV-TVVARLVLFQLKEEGYNPLKESYVQ 165 (424)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~pDlvi~d~~~~~~~~~A~~lgiP~v~~~~~~~~-~~~~~~~~~~~~~~~~~p~~~~~~~ 165 (424)
....+..+.+.+++. ++|++|.-........++...+.+.+-+...... ....... . ...
T Consensus 70 ~~~~~~~~~~~lr~~-----~yD~vi~~~~~~~s~~l~~~~~~~r~g~~~~~~~~~~~~~~~-~----~~~--------- 130 (319)
T TIGR02193 70 TWREIKALRALLRAE-----RYDAVIDAQGLIKSALVARMARGPRHGFDWRSAREPLASLFY-N----KRV--------- 130 (319)
T ss_pred hHHHHHHHHHHHhhc-----cchhhhhhhhhHHHHHHHHhhCCceecCCCCccccHHHHHHh-c----Ccc---------
Confidence 011122334445444 8999986544444556666666443322111000 0000000 0 000
Q ss_pred HHHHhhhccCCceEEecChhhhhHHHHHHHHhccCCCeeeecccccCCCCCCCCCcccccccccccccCCCCeEEEEEeC
Q 046167 166 LINNAYSARTSSAVISNTIYCLEESVLSQLQQYFKVPNFPIGPLHKFAPSSNGSLLKEDTSCISWLNNQSPKSVIYVSLG 245 (424)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vGp~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~I~vs~G 245 (424)
. .-...... ......+...++.+.....+... ..+..+ ...++....+++.|.+..|
T Consensus 131 --------~-----~~~~~h~~-~~~~~ll~~~lg~~~~~~~~~~~--------~~~~~~-~~~~~~~~~~~~~i~i~~g 187 (319)
T TIGR02193 131 --------G-----ISYQQHAV-ERNRKLFALALGYPPPIAETIDY--------GLARRA-AVAFLGHALPAPYAVLLHA 187 (319)
T ss_pred --------C-----CCcccCHH-HHHHHHHHHHcCCCCCCCCcccc--------Cccchh-hhhhhhccCCCCEEEEEeC
Confidence 0 00000000 11111111111111100000000 001110 1223332234567777777
Q ss_pred Cccc---CCHHHHHHHHHHHHhCCCCeEEEEcCCCCCCCcccccCchhHHHHhcCCCceeee--cchh-hhhcccccccc
Q 046167 246 SVAS---MDKKELEEMAWGLVNSKQPFLWVIRPRTNNAPEGIELLPKVLAEDVQENGYIVKW--APQK-EVLSHVAVGGF 319 (424)
Q Consensus 246 s~~~---~~~~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~nv~v~~~--ip~~-~ll~~~~~~~~ 319 (424)
+... .+.+.+..+++.+.+.+.++++..++.. .....+.+.+..+ +..+.+- +++. .+++++++ +
T Consensus 188 as~~~K~wp~e~~~~l~~~l~~~~~~~vl~~g~~~------e~~~~~~i~~~~~-~~~l~g~~sL~el~ali~~a~l--~ 258 (319)
T TIGR02193 188 TSRDDKTWPEERWRELARLLLARGLQIVLPWGNDA------EKQRAERIAEALP-GAVVLPKMSLAEVAALLAGADA--V 258 (319)
T ss_pred CCcccCCCCHHHHHHHHHHHHHCCCeEEEeCCCHH------HHHHHHHHHhhCC-CCeecCCCCHHHHHHHHHcCCE--E
Confidence 5443 6788899998888766777665543221 0111222322222 2233433 3333 48877776 7
Q ss_pred ccccchhhHHHhhhcCCceeecCcccchhhHHHHHHhhhhcc---eecC-c-ccchHHHHHHHHHHh
Q 046167 320 WSHCGWNSTLESICEGVPMICMPFFEDQKVNARYLSHVWGVG---LELE-H-ELERGAVEKAVRKLT 381 (424)
Q Consensus 320 i~hgG~~t~~eal~~GvP~v~~P~~~DQ~~na~~~~~~~G~g---~~~~-~-~~~~~~L~~ai~~ll 381 (424)
|+. -.|.++=|.+.|+|+|.+ ++ +.+..+..- +|-. +.-. . .++++++.++++++|
T Consensus 259 I~~-DSgp~HlAaa~g~P~i~l--fg--~t~p~~~~P-~~~~~~~~~~~~~~~I~~~~V~~ai~~~~ 319 (319)
T TIGR02193 259 VGV-DTGLTHLAAALDKPTVTL--YG--ATDPGRTGG-YGKPNVALLGESGANPTPDEVLAALEELL 319 (319)
T ss_pred EeC-CChHHHHHHHcCCCEEEE--EC--CCCHhhccc-CCCCceEEccCccCCCCHHHHHHHHHhhC
Confidence 774 567888899999999975 11 111111111 1111 1111 2 689999999998875
No 130
>PF13692 Glyco_trans_1_4: Glycosyl transferases group 1; PDB: 3OY2_A 3OY7_B 2Q6V_A 2HY7_A 3CV3_A 3CUY_A.
Probab=97.46 E-value=0.00029 Score=57.07 Aligned_cols=80 Identities=21% Similarity=0.218 Sum_probs=50.0
Q ss_pred cCCCceeeecchh-hhhccccccccccc---cchhhHHHhhhcCCceeecCcccchhhHHHHHHhhhhcceecCcccchH
Q 046167 296 QENGYIVKWAPQK-EVLSHVAVGGFWSH---CGWNSTLESICEGVPMICMPFFEDQKVNARYLSHVWGVGLELEHELERG 371 (424)
Q Consensus 296 ~~nv~v~~~ip~~-~ll~~~~~~~~i~h---gG~~t~~eal~~GvP~v~~P~~~DQ~~na~~~~~~~G~g~~~~~~~~~~ 371 (424)
.+|+.+.+|++.. ++++.+++....+. +-.+++.|++++|+|+|+.+. .....++. .+.|..+. -+++
T Consensus 52 ~~~v~~~g~~~e~~~~l~~~dv~l~p~~~~~~~~~k~~e~~~~G~pvi~~~~-----~~~~~~~~-~~~~~~~~--~~~~ 123 (135)
T PF13692_consen 52 RPNVRFHGFVEELPEILAAADVGLIPSRFNEGFPNKLLEAMAAGKPVIASDN-----GAEGIVEE-DGCGVLVA--NDPE 123 (135)
T ss_dssp HCTEEEE-S-HHHHHHHHC-SEEEE-BSS-SCC-HHHHHHHCTT--EEEEHH-----HCHCHS----SEEEE-T--T-HH
T ss_pred CCCEEEcCCHHHHHHHHHhCCEEEEEeeCCCcCcHHHHHHHHhCCCEEECCc-----chhhheee-cCCeEEEC--CCHH
Confidence 4688999999643 48888888555442 235899999999999999754 12334444 37887773 4999
Q ss_pred HHHHHHHHHhcc
Q 046167 372 AVEKAVRKLTVD 383 (424)
Q Consensus 372 ~L~~ai~~ll~~ 383 (424)
++.++|.++++|
T Consensus 124 ~l~~~i~~l~~d 135 (135)
T PF13692_consen 124 ELAEAIERLLND 135 (135)
T ss_dssp HHHHHHHHHHH-
T ss_pred HHHHHHHHHhcC
Confidence 999999999875
No 131
>PF13477 Glyco_trans_4_2: Glycosyl transferase 4-like
Probab=97.42 E-value=0.00092 Score=54.45 Aligned_cols=105 Identities=11% Similarity=0.163 Sum_probs=66.8
Q ss_pred eEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCCCCCCCCCCCCCceEEeCCCCCCCCccccccHHHHHHHHHHhchh
Q 046167 10 RVVLVPSPHQGHINPMLQLGTILHSKGFSITVVHTQFNSPNPSNHPEFEFQSIPDGLMDVNISARNLVDSILLLNENCRE 89 (424)
Q Consensus 10 ril~~~~~~~GH~~p~~~la~~L~~~Gh~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (424)
|||+++.....| ...+++.|+++||+|++++.....+......++.+..++... ......+. + .
T Consensus 1 KIl~i~~~~~~~---~~~~~~~L~~~g~~V~ii~~~~~~~~~~~~~~i~~~~~~~~~-------k~~~~~~~-~----~- 64 (139)
T PF13477_consen 1 KILLIGNTPSTF---IYNLAKELKKRGYDVHIITPRNDYEKYEIIEGIKVIRLPSPR-------KSPLNYIK-Y----F- 64 (139)
T ss_pred CEEEEecCcHHH---HHHHHHHHHHCCCEEEEEEcCCCchhhhHhCCeEEEEecCCC-------CccHHHHH-H----H-
Confidence 577777766666 457799999999999999996444343334788888875221 11222221 1 1
Q ss_pred HHHHHHHHHHhhcCCCCCceEEEecCccc---hHHHHHHHhC-CceEEEecch
Q 046167 90 PFRNWLVQMIKEQQPGDEIVCIIYDEVMY---FAEASASQLN-VQSIILRTSG 138 (424)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~pDlvi~d~~~~---~~~~~A~~lg-iP~v~~~~~~ 138 (424)
.+..++++. +||+|.+..... .+..+++..+ +|++...+..
T Consensus 65 ~l~k~ik~~--------~~DvIh~h~~~~~~~~~~l~~~~~~~~~~i~~~hg~ 109 (139)
T PF13477_consen 65 RLRKIIKKE--------KPDVIHCHTPSPYGLFAMLAKKLLKNKKVIYTVHGS 109 (139)
T ss_pred HHHHHhccC--------CCCEEEEecCChHHHHHHHHHHHcCCCCEEEEecCC
Confidence 223344444 899999886543 2334667788 9999776643
No 132
>PRK10422 lipopolysaccharide core biosynthesis protein; Provisional
Probab=97.22 E-value=0.028 Score=53.79 Aligned_cols=111 Identities=16% Similarity=0.149 Sum_probs=73.6
Q ss_pred cCCCCceEEEEcCCCccChHHHHHHHHHHHhC--CCeEEEEeCCCCCCCCCCCCCceE-EeCCCCCCCCccccccHHHHH
Q 046167 4 QGQRRRRVVLVPSPHQGHINPMLQLGTILHSK--GFSITVVHTQFNSPNPSNHPEFEF-QSIPDGLMDVNISARNLVDSI 80 (424)
Q Consensus 4 m~~~~~ril~~~~~~~GH~~p~~~la~~L~~~--Gh~V~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~~ 80 (424)
|++.++|||++-....|++.=..++.++|+++ +.+|++++.+.........+.+.- +.++.. .......+
T Consensus 1 ~~~~~~~ILii~~~~iGD~vl~~P~l~~Lk~~~P~a~I~~l~~~~~~~l~~~~P~id~vi~~~~~-------~~~~~~~~ 73 (352)
T PRK10422 1 MDKPFRRILIIKMRFHGDMLLTTPVISSLKKNYPDAKIDVLLYQDTIPILSENPEINALYGIKNK-------KAGASEKI 73 (352)
T ss_pred CCCCCceEEEEEecccCceeeHHHHHHHHHHHCCCCeEEEEeccChHHHhccCCCceEEEEeccc-------cccHHHHH
Confidence 55556899999999999999999999999997 899999999766655555455543 333311 00111111
Q ss_pred HHHHHhchhHHHHHHHHHHhhcCCCCCceEEEecCccchHHHHHHHhCCceEEE
Q 046167 81 LLLNENCREPFRNWLVQMIKEQQPGDEIVCIIYDEVMYFAEASASQLNVQSIIL 134 (424)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~pDlvi~d~~~~~~~~~A~~lgiP~v~~ 134 (424)
. .+..++..+++. ++|++|.-........++...|.|..+-
T Consensus 74 ~--------~~~~l~~~lr~~-----~yD~vidl~~~~~s~ll~~l~~a~~rig 114 (352)
T PRK10422 74 K--------NFFSLIKVLRAN-----KYDLIVNLTDQWMVALLVRLLNARVKIS 114 (352)
T ss_pred H--------HHHHHHHHHhhC-----CCCEEEEcccchHHHHHHHHhCCCeEEe
Confidence 1 112244556554 8999997554455556777778887653
No 133
>TIGR02400 trehalose_OtsA alpha,alpha-trehalose-phosphate synthase [UDP-forming]. This enzyme catalyzes the key, penultimate step in biosynthesis of trehalose, a compatible solute made as an osmoprotectant in some species in all three domains of life. The gene symbol OtsA stands for osmotically regulated trehalose synthesis A. Trehalose helps protect against both osmotic and thermal stresses, and is made from two glucose subunits. This model excludes glucosylglycerol-phosphate synthase, an enzyme of an analogous osmoprotectant system in many cyanobacterial strains. This model does not identify archaeal examples, as they are more divergent than glucosylglycerol-phosphate synthase. Sequences that score in the gray zone between the trusted and noise cutoffs include a number of yeast multidomain proteins in which the N-terminal domain may be functionally equivalent to this family. The gray zone also includes the OtsA of Cornyebacterium glutamicum (and related species), shown to be responsib
Probab=97.11 E-value=0.041 Score=54.38 Aligned_cols=104 Identities=13% Similarity=0.081 Sum_probs=70.9
Q ss_pred eecchhh---hhccccccccccc---cch-hhHHHhhhcCCc----eeecCcccchhhHHHHHHhhhhcceecCcccchH
Q 046167 303 KWAPQKE---VLSHVAVGGFWSH---CGW-NSTLESICEGVP----MICMPFFEDQKVNARYLSHVWGVGLELEHELERG 371 (424)
Q Consensus 303 ~~ip~~~---ll~~~~~~~~i~h---gG~-~t~~eal~~GvP----~v~~P~~~DQ~~na~~~~~~~G~g~~~~~~~~~~ 371 (424)
+.+++.+ +++.+++ ++.- =|+ .+..||+++|+| +|+.-+.|-. . . ++-|+.+++ .+++
T Consensus 342 ~~~~~~el~aly~aaDv--~vv~S~~EG~~Lv~lEamA~g~P~~g~vVlS~~~G~~----~---~-l~~gllVnP-~d~~ 410 (456)
T TIGR02400 342 RSYDREELMALYRAADV--GLVTPLRDGMNLVAKEYVAAQDPKDGVLILSEFAGAA----Q---E-LNGALLVNP-YDID 410 (456)
T ss_pred CCCCHHHHHHHHHhCcE--EEECccccccCccHHHHHHhcCCCCceEEEeCCCCCh----H---H-hCCcEEECC-CCHH
Confidence 4556654 6777777 6653 355 467899999999 7776544322 1 2 234666666 7899
Q ss_pred HHHHHHHHHhcccchHHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHhc
Q 046167 372 AVEKAVRKLTVDKEGEFLRQRAAQLKEEVELSTRKGGFSYNSLNELLDLINK 423 (424)
Q Consensus 372 ~L~~ai~~ll~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~a~~~~~~~~~~ 423 (424)
+++++|.++|+++. +.-+++.+++.+.+.. .+...-++.+++.+.+
T Consensus 411 ~lA~aI~~aL~~~~-~er~~r~~~~~~~v~~-----~~~~~W~~~~l~~l~~ 456 (456)
T TIGR02400 411 GMADAIARALTMPL-EEREERHRAMMDKLRK-----NDVQRWREDFLSDLNS 456 (456)
T ss_pred HHHHHHHHHHcCCH-HHHHHHHHHHHHHHhh-----CCHHHHHHHHHHHhhC
Confidence 99999999998642 3456666666666543 6777888888887754
No 134
>KOG1111 consensus N-acetylglucosaminyltransferase complex, subunit PIG-A/SPT14, required for phosphatidylinositol biosynthesis/Sulfolipid synthase [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Lipid transport and metabolism]
Probab=97.10 E-value=0.077 Score=49.16 Aligned_cols=46 Identities=17% Similarity=0.258 Sum_probs=35.8
Q ss_pred HhcCCCceeeecchhh---hhccccccccccccc----hhhHHHhhhcCCceeec
Q 046167 294 DVQENGYIVKWAPQKE---VLSHVAVGGFWSHCG----WNSTLESICEGVPMICM 341 (424)
Q Consensus 294 ~~~~nv~v~~~ip~~~---ll~~~~~~~~i~hgG----~~t~~eal~~GvP~v~~ 341 (424)
.+.++|.+.+-+|++. +|..-++ |++-.= .-++.||..+|.|+|..
T Consensus 249 ~l~~rV~~lG~v~h~~Vr~vl~~G~I--FlntSlTEafc~~ivEAaScGL~VVsT 301 (426)
T KOG1111|consen 249 FLQDRVVMLGTVPHDRVRDVLVRGDI--FLNTSLTEAFCMVIVEAASCGLPVVST 301 (426)
T ss_pred hccCceEEecccchHHHHHHHhcCcE--EeccHHHHHHHHHHHHHHhCCCEEEEe
Confidence 3668999999999876 7777777 777654 24678999999999853
No 135
>PF06258 Mito_fiss_Elm1: Mitochondrial fission ELM1; InterPro: IPR009367 This family consists of several hypothetical eukaryotic and prokaryotic proteins. The function of this family is unknown.
Probab=96.99 E-value=0.045 Score=51.08 Aligned_cols=204 Identities=17% Similarity=0.091 Sum_probs=103.9
Q ss_pred CceEEEecCcc--chHHHHHHHhCC--ceEEEecchHHHHHHHHhhhcccccCCCCCChhHHHHHHHhhhccCCceEEec
Q 046167 107 EIVCIIYDEVM--YFAEASASQLNV--QSIILRTSGAVTVVARLVLFQLKEEGYNPLKESYVQLINNAYSARTSSAVISN 182 (424)
Q Consensus 107 ~pDlvi~d~~~--~~~~~~A~~lgi--P~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 182 (424)
.||+||+-... .....+.+..|- ++|.+-. |.. . ....+.++.+
T Consensus 57 ~pdLiIsaGr~t~~~~~~l~r~~gg~~~~V~i~~------------P~~----~----------------~~~FDlvi~p 104 (311)
T PF06258_consen 57 WPDLIISAGRRTAPAALALRRASGGRTKTVQIMD------------PRL----P----------------PRPFDLVIVP 104 (311)
T ss_pred CCcEEEECCCchHHHHHHHHHHcCCCceEEEEcC------------CCC----C----------------ccccCEEEEC
Confidence 69999998655 445566677776 5554411 111 0 2345667776
Q ss_pred ChhhhhHHHHHHHHhccCCC-eeeecccccCCCCCCCCCcccccccccccccCCCCeEEEEEeCCccc---CCHHHHH--
Q 046167 183 TIYCLEESVLSQLQQYFKVP-NFPIGPLHKFAPSSNGSLLKEDTSCISWLNNQSPKSVIYVSLGSVAS---MDKKELE-- 256 (424)
Q Consensus 183 ~~~~l~~~~~~~~~~~~~~~-~~~vGp~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~I~vs~Gs~~~---~~~~~~~-- 256 (424)
..+.+.. +++ +...|+++.-.+. ...+....+...+. .-+++.+-|-.|.-.. .+.+...
T Consensus 105 ~HD~~~~----------~~Nvl~t~ga~~~i~~~---~l~~a~~~~~~~~~-~l~~p~~avLIGG~s~~~~~~~~~~~~l 170 (311)
T PF06258_consen 105 EHDRLPR----------GPNVLPTLGAPNRITPE---RLAEAAAAWAPRLA-ALPRPRVAVLIGGDSKHYRWDEEDAERL 170 (311)
T ss_pred cccCcCC----------CCceEecccCCCcCCHH---HHHHHHHhhhhhhc-cCCCCeEEEEECcCCCCcccCHHHHHHH
Confidence 6554321 144 4556666654321 00011111112222 1235566666665333 4455333
Q ss_pred --HHHHHHHhCCCCeEEEEcCCCCCCCcccccCchhHHHHhc--CCCcee---eecchhhhhccccccccccccc-hhhH
Q 046167 257 --EMAWGLVNSKQPFLWVIRPRTNNAPEGIELLPKVLAEDVQ--ENGYIV---KWAPQKEVLSHVAVGGFWSHCG-WNST 328 (424)
Q Consensus 257 --~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~--~nv~v~---~~ip~~~ll~~~~~~~~i~hgG-~~t~ 328 (424)
.+...++..+..+.++.+... . ......+.+... +.+++. +.=|+..+|..++. ++.-+. .+-+
T Consensus 171 ~~~l~~~~~~~~~~~~vttSRRT--p----~~~~~~L~~~~~~~~~~~~~~~~~~nPy~~~La~ad~--i~VT~DSvSMv 242 (311)
T PF06258_consen 171 LDQLAALAAAYGGSLLVTTSRRT--P----PEAEAALRELLKDNPGVYIWDGTGENPYLGFLAAADA--IVVTEDSVSMV 242 (311)
T ss_pred HHHHHHHHHhCCCeEEEEcCCCC--c----HHHHHHHHHhhcCCCceEEecCCCCCcHHHHHHhCCE--EEEcCccHHHH
Confidence 344444445545554543221 1 111222222232 233233 22366778877776 666666 4677
Q ss_pred HHhhhcCCceeecCcccchhh----HHHHHHhhhhcceecCc
Q 046167 329 LESICEGVPMICMPFFEDQKV----NARYLSHVWGVGLELEH 366 (424)
Q Consensus 329 ~eal~~GvP~v~~P~~~DQ~~----na~~~~~~~G~g~~~~~ 366 (424)
.||+..|+|+.++|.-. +.. -...+++ .|+-..+..
T Consensus 243 sEA~~tG~pV~v~~l~~-~~~r~~r~~~~L~~-~g~~r~~~~ 282 (311)
T PF06258_consen 243 SEAAATGKPVYVLPLPG-RSGRFRRFHQSLEE-RGAVRPFTG 282 (311)
T ss_pred HHHHHcCCCEEEecCCC-cchHHHHHHHHHHH-CCCEEECCC
Confidence 99999999999999865 322 2344555 366665554
No 136
>PHA01633 putative glycosyl transferase group 1
Probab=96.89 E-value=0.0096 Score=56.05 Aligned_cols=85 Identities=15% Similarity=0.091 Sum_probs=55.7
Q ss_pred hcCCCcee---eecchh---hhhcccccccccccc---c-hhhHHHhhhcCCceeecCc------ccch------hhHHH
Q 046167 295 VQENGYIV---KWAPQK---EVLSHVAVGGFWSHC---G-WNSTLESICEGVPMICMPF------FEDQ------KVNAR 352 (424)
Q Consensus 295 ~~~nv~v~---~~ip~~---~ll~~~~~~~~i~hg---G-~~t~~eal~~GvP~v~~P~------~~DQ------~~na~ 352 (424)
.++++.+. +++++. .+++.+++ ||.-+ | ..++.||+++|+|+|+.-. .+|+ .++..
T Consensus 199 l~~~V~f~g~~G~~~~~dl~~~y~~aDi--fV~PS~~EgfGlvlLEAMA~G~PVVas~~~~l~Ei~g~~~~~Li~~~~v~ 276 (335)
T PHA01633 199 VPANVHFVAEFGHNSREYIFAFYGAMDF--TIVPSGTEGFGMPVLESMAMGTPVIHQLMPPLDEFTSWQWNLLIKSSKVE 276 (335)
T ss_pred CCCcEEEEecCCCCCHHHHHHHHHhCCE--EEECCccccCCHHHHHHHHcCCCEEEccCCCceeecCCccceeeCCCCHH
Confidence 45678887 445544 47877777 77542 3 4578999999999998532 2332 23332
Q ss_pred HHH--hhhhcceecCcccchHHHHHHHHHHhcc
Q 046167 353 YLS--HVWGVGLELEHELERGAVEKAVRKLTVD 383 (424)
Q Consensus 353 ~~~--~~~G~g~~~~~~~~~~~L~~ai~~ll~~ 383 (424)
-.. .. |.|..++. .++++++++|.+++..
T Consensus 277 ~~~~~~~-g~g~~~~~-~d~~~la~ai~~~~~~ 307 (335)
T PHA01633 277 EYYDKEH-GQKWKIHK-FQIEDMANAIILAFEL 307 (335)
T ss_pred HhcCccc-CceeeecC-CCHHHHHHHHHHHHhc
Confidence 222 32 66666665 8999999999999543
No 137
>PHA01630 putative group 1 glycosyl transferase
Probab=96.77 E-value=0.047 Score=51.67 Aligned_cols=114 Identities=7% Similarity=0.039 Sum_probs=66.5
Q ss_pred eecchhh---hhccccccccc--cc-cc-hhhHHHhhhcCCceeecCccc--chhh---HHHHHHhh----------hhc
Q 046167 303 KWAPQKE---VLSHVAVGGFW--SH-CG-WNSTLESICEGVPMICMPFFE--DQKV---NARYLSHV----------WGV 360 (424)
Q Consensus 303 ~~ip~~~---ll~~~~~~~~i--~h-gG-~~t~~eal~~GvP~v~~P~~~--DQ~~---na~~~~~~----------~G~ 360 (424)
+++|+.+ +++.+++ ++ ++ .| ..++.||+++|+|+|+.-..+ |.-. |+..+... .++
T Consensus 196 ~~v~~~~l~~~y~~aDv--~v~pS~~E~fgl~~lEAMA~G~PVIas~~gg~~E~i~~~~ng~lv~~~~~~~~~~~~~~~~ 273 (331)
T PHA01630 196 TPLPDDDIYSLFAGCDI--LFYPVRGGAFEIPVIEALALGLDVVVTEKGAWSEWVLSNLDVYWIKSGRKPKLWYTNPIHV 273 (331)
T ss_pred ccCCHHHHHHHHHhCCE--EEECCccccCChHHHHHHHcCCCEEEeCCCCchhhccCCCceEEeeecccccccccCCccc
Confidence 3466544 6877787 55 33 22 457899999999999976543 3211 22111100 134
Q ss_pred ceecCcccchHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHhcC
Q 046167 361 GLELEHELERGAVEKAVRKLTVDKEGEFLRQRAAQLKEEVELSTRKGGFSYNSLNELLDLINKF 424 (424)
Q Consensus 361 g~~~~~~~~~~~L~~ai~~ll~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~a~~~~~~~~~~~ 424 (424)
|..++. +.+++.+++.+++.|.+.+..+++...-+....+. -+....++++++.++++
T Consensus 274 G~~v~~--~~~~~~~~ii~~l~~~~~~~~~~~~~~~~~~~~~~----fs~~~ia~k~~~l~~~~ 331 (331)
T PHA01630 274 GYFLDP--DIEDAYQKLLEALANWTPEKKKENLEGRAILYREN----YSYNAIAKMWEKILEKY 331 (331)
T ss_pred ccccCC--CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHh----CCHHHHHHHHHHHHhcC
Confidence 555554 67788888888887621123444444433334443 56667888888887753
No 138
>PRK10916 ADP-heptose:LPS heptosyltransferase II; Provisional
Probab=96.73 E-value=0.16 Score=48.51 Aligned_cols=103 Identities=13% Similarity=0.092 Sum_probs=70.8
Q ss_pred ceEEEEcCCCccChHHHHHHHHHHHhC--CCeEEEEeCCCCCCCCCCCCCceEEe-CCCCCCCCccccccHHHHHHHHHH
Q 046167 9 RRVVLVPSPHQGHINPMLQLGTILHSK--GFSITVVHTQFNSPNPSNHPEFEFQS-IPDGLMDVNISARNLVDSILLLNE 85 (424)
Q Consensus 9 ~ril~~~~~~~GH~~p~~~la~~L~~~--Gh~V~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 85 (424)
||||++-....|++.=..++.++|+++ +.+|+|++.+.........+.+..+. ++.. ..... +
T Consensus 1 mrILii~~~~iGD~il~tP~l~~Lk~~~P~a~I~~l~~~~~~~l~~~~P~vd~vi~~~~~--------~~~~~-~----- 66 (348)
T PRK10916 1 MKILVIGPSWVGDMMMSQSLYRTLKARYPQAIIDVMAPAWCRPLLSRMPEVNEAIPMPLG--------HGALE-I----- 66 (348)
T ss_pred CcEEEEccCcccHHHhHHHHHHHHHHHCCCCeEEEEechhhHHHHhcCCccCEEEecccc--------cchhh-h-----
Confidence 589999999999999999999999996 99999999876655555556665433 2211 00000 0
Q ss_pred hchhHHHHHHHHHHhhcCCCCCceEEEecCccchHHHHHHHhCCceEE
Q 046167 86 NCREPFRNWLVQMIKEQQPGDEIVCIIYDEVMYFAEASASQLNVQSII 133 (424)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~pDlvi~d~~~~~~~~~A~~lgiP~v~ 133 (424)
.....+++.+++. ++|++|.-....-...++...|+|.-+
T Consensus 67 ---~~~~~l~~~lr~~-----~yD~vidl~~~~~s~~l~~~~~~~~ri 106 (348)
T PRK10916 67 ---GERRRLGHSLREK-----RYDRAYVLPNSFKSALVPFFAGIPHRT 106 (348)
T ss_pred ---HHHHHHHHHHHhc-----CCCEEEECCCcHHHHHHHHHcCCCeEe
Confidence 1122345566555 899999765555666777888888664
No 139
>COG4370 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.69 E-value=0.16 Score=45.95 Aligned_cols=106 Identities=15% Similarity=0.069 Sum_probs=60.7
Q ss_pred eecchhhhhccccccccccccchhhH-HHhhhcCCceeecCcccchh--hHHHHHHhhhhcceecCcccchHHHHHHHHH
Q 046167 303 KWAPQKEVLSHVAVGGFWSHCGWNST-LESICEGVPMICMPFFEDQK--VNARYLSHVWGVGLELEHELERGAVEKAVRK 379 (424)
Q Consensus 303 ~~ip~~~ll~~~~~~~~i~hgG~~t~-~eal~~GvP~v~~P~~~DQ~--~na~~~~~~~G~g~~~~~~~~~~~L~~ai~~ 379 (424)
.|-...++|.++++ .|-- .||- -.++-.|+|+|.+|-.+-|+ ..|++=.+-+|+.+.+-. ..++.-..+.++
T Consensus 301 sqqsfadiLH~ada--algm--AGTAtEQavGLGkPvi~fPg~GPQy~pgFA~rQ~rLLG~sltlv~-~~aq~a~~~~q~ 375 (412)
T COG4370 301 SQQSFADILHAADA--ALGM--AGTATEQAVGLGKPVIGFPGQGPQYNPGFAERQQRLLGASLTLVR-PEAQAAAQAVQE 375 (412)
T ss_pred eHHHHHHHHHHHHH--HHHh--ccchHHHhhccCCceeecCCCCCCcChHHHHHHHHHhcceeeecC-CchhhHHHHHHH
Confidence 44444445544443 3322 3333 34678999999999999994 556666664688887766 344444555556
Q ss_pred HhcccchHHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHhc
Q 046167 380 LTVDKEGEFLRQRAAQLKEEVELSTRKGGFSYNSLNELLDLINK 423 (424)
Q Consensus 380 ll~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~a~~~~~~~~~~ 423 (424)
+|.| ....++++ +.-+.. -|...++..|.|.+.+
T Consensus 376 ll~d---p~r~~air---~nGqrR----iGqaGaa~rIAe~l~e 409 (412)
T COG4370 376 LLGD---PQRLTAIR---HNGQRR----IGQAGAARRIAEELGE 409 (412)
T ss_pred HhcC---hHHHHHHH---hcchhh----ccCcchHHHHHHHHHH
Confidence 9999 33333333 211111 2333466666666554
No 140
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=96.65 E-value=0.057 Score=53.44 Aligned_cols=150 Identities=18% Similarity=0.277 Sum_probs=94.1
Q ss_pred CCCeEEEEEeCCcccCCHHHHHHHHHHHHhCCCCeEEEEcCCCCCCCcccccCchhHHH---H---hcCCCceeeecchh
Q 046167 235 SPKSVIYVSLGSVASMDKKELEEMAWGLVNSKQPFLWVIRPRTNNAPEGIELLPKVLAE---D---VQENGYIVKWAPQK 308 (424)
Q Consensus 235 ~~~~~I~vs~Gs~~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~---~---~~~nv~v~~~ip~~ 308 (424)
+++.+||++|-..-..+++.++.-++.+.+.+-.++|..+.+-. |. .+|.. . .++++.+.+-+...
T Consensus 756 p~d~vvf~~FNqLyKidP~~l~~W~~ILk~VPnS~LwllrfPa~-ge-------~rf~ty~~~~Gl~p~riifs~va~k~ 827 (966)
T KOG4626|consen 756 PEDAVVFCNFNQLYKIDPSTLQMWANILKRVPNSVLWLLRFPAV-GE-------QRFRTYAEQLGLEPDRIIFSPVAAKE 827 (966)
T ss_pred CCCeEEEeechhhhcCCHHHHHHHHHHHHhCCcceeEEEecccc-ch-------HHHHHHHHHhCCCccceeeccccchH
Confidence 45669999988777789999999999999999999999976531 21 22221 1 22555665555543
Q ss_pred h-----hhccccccccccccchhhHHHhhhcCCceeecCcccchhhH-HHHHHhhhhcceecCcccchHHHHHHHHHHhc
Q 046167 309 E-----VLSHVAVGGFWSHCGWNSTLESICEGVPMICMPFFEDQKVN-ARYLSHVWGVGLELEHELERGAVEKAVRKLTV 382 (424)
Q Consensus 309 ~-----ll~~~~~~~~i~hgG~~t~~eal~~GvP~v~~P~~~DQ~~n-a~~~~~~~G~g~~~~~~~~~~~L~~ai~~ll~ 382 (424)
+ .|..-.++-..+ .|.+|.++.|++|+|||.+|.-.--... +-.+.. +|+|..+.+ +.++-.+.--++-.
T Consensus 828 eHvrr~~LaDv~LDTplc-nGhTTg~dvLw~GvPmVTmpge~lAsrVa~Sll~~-~Gl~hliak--~~eEY~~iaV~Lat 903 (966)
T KOG4626|consen 828 EHVRRGQLADVCLDTPLC-NGHTTGMDVLWAGVPMVTMPGETLASRVAASLLTA-LGLGHLIAK--NREEYVQIAVRLAT 903 (966)
T ss_pred HHHHhhhhhhhcccCcCc-CCcccchhhhccCCceeecccHHHHHHHHHHHHHH-cccHHHHhh--hHHHHHHHHHHhhc
Confidence 3 221112233444 4788999999999999999973332333 344555 688876654 55555554445555
Q ss_pred ccchHHHHHHHHHHHHHHHH
Q 046167 383 DKEGEFLRQRAAQLKEEVEL 402 (424)
Q Consensus 383 ~~~~~~~~~~a~~l~~~~~~ 402 (424)
| ++..++++.++++
T Consensus 904 d------~~~L~~lr~~l~~ 917 (966)
T KOG4626|consen 904 D------KEYLKKLRAKLRK 917 (966)
T ss_pred C------HHHHHHHHHHHHH
Confidence 5 3334444444443
No 141
>PRK10964 ADP-heptose:LPS heptosyl transferase I; Provisional
Probab=96.63 E-value=0.12 Score=48.62 Aligned_cols=50 Identities=24% Similarity=0.256 Sum_probs=41.1
Q ss_pred ceEEEEcCCCccChHHHHHHHHHHHhC--CCeEEEEeCCCCCCCCCCCCCce
Q 046167 9 RRVVLVPSPHQGHINPMLQLGTILHSK--GFSITVVHTQFNSPNPSNHPEFE 58 (424)
Q Consensus 9 ~ril~~~~~~~GH~~p~~~la~~L~~~--Gh~V~~~~~~~~~~~~~~~~g~~ 58 (424)
||||++-....|++.-..++.+.|+++ +.+|++++.+.........+.+.
T Consensus 1 m~ILii~~~~iGD~v~~~p~~~~lk~~~P~a~I~~l~~~~~~~l~~~~p~vd 52 (322)
T PRK10964 1 MRVLIVKTSSMGDVLHTLPALTDAQQAIPGIQFDWVVEEGFAQIPSWHPAVD 52 (322)
T ss_pred CeEEEEeccchHHHHhHHHHHHHHHHhCCCCEEEEEECHHHHHHHhcCCCcc
Confidence 589999999999999999999999997 99999999875544444334454
No 142
>PF13524 Glyco_trans_1_2: Glycosyl transferases group 1
Probab=96.59 E-value=0.017 Score=43.17 Aligned_cols=83 Identities=14% Similarity=0.108 Sum_probs=54.8
Q ss_pred ccchhhHHHhhhcCCceeecCcccchhhHHHHHHhhhh-cceecCcccchHHHHHHHHHHhcccchHHHHHHHHHHHHHH
Q 046167 322 HCGWNSTLESICEGVPMICMPFFEDQKVNARYLSHVWG-VGLELEHELERGAVEKAVRKLTVDKEGEFLRQRAAQLKEEV 400 (424)
Q Consensus 322 hgG~~t~~eal~~GvP~v~~P~~~DQ~~na~~~~~~~G-~g~~~~~~~~~~~L~~ai~~ll~~~~~~~~~~~a~~l~~~~ 400 (424)
+|-...+.|++++|+|+|.-.. ......+.+ | -++... +.+++.++|+.+++|+ +..++-+++-.+.+
T Consensus 9 ~~~~~r~~E~~a~G~~vi~~~~----~~~~~~~~~--~~~~~~~~---~~~el~~~i~~ll~~~--~~~~~ia~~a~~~v 77 (92)
T PF13524_consen 9 DGPNMRIFEAMACGTPVISDDS----PGLREIFED--GEHIITYN---DPEELAEKIEYLLENP--EERRRIAKNARERV 77 (92)
T ss_pred CCCchHHHHHHHCCCeEEECCh----HHHHHHcCC--CCeEEEEC---CHHHHHHHHHHHHCCH--HHHHHHHHHHHHHH
Confidence 4456688999999999999644 444444433 3 333333 8999999999999995 33344444444444
Q ss_pred HHHhhcCCCcHHHHHHHHH
Q 046167 401 ELSTRKGGFSYNSLNELLD 419 (424)
Q Consensus 401 ~~~~~~~g~~~~a~~~~~~ 419 (424)
++. .+....++.|++
T Consensus 78 ~~~----~t~~~~~~~il~ 92 (92)
T PF13524_consen 78 LKR----HTWEHRAEQILE 92 (92)
T ss_pred HHh----CCHHHHHHHHHC
Confidence 444 777777777753
No 143
>TIGR02201 heptsyl_trn_III lipopolysaccharide heptosyltransferase III, putative. This family consists of examples of the putative ADP-heptose:LPS heptosyltransferase III, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria. This enzyme may be less widely distributed than heptosyltransferases I and II.
Probab=96.58 E-value=0.46 Score=45.23 Aligned_cols=105 Identities=13% Similarity=0.126 Sum_probs=69.9
Q ss_pred eEEEEcCCCccChHHHHHHHHHHHhC--CCeEEEEeCCCCCCCCCCCCCce-EEeCCCCCCCCccccccHHHHHHHHHHh
Q 046167 10 RVVLVPSPHQGHINPMLQLGTILHSK--GFSITVVHTQFNSPNPSNHPEFE-FQSIPDGLMDVNISARNLVDSILLLNEN 86 (424)
Q Consensus 10 ril~~~~~~~GH~~p~~~la~~L~~~--Gh~V~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (424)
|||++-....|++.=..++.++|+++ +.+|++++.+.........+.+. ++.++.... ......+.
T Consensus 1 rILii~~~~iGD~vl~tp~l~~Lk~~~P~a~I~~l~~~~~~~l~~~~p~vd~vi~~~~~~~------~~~~~~~~----- 69 (344)
T TIGR02201 1 RILLIKLRHHGDMLLTTPVISSLKKNYPDAKIDVLLYQETIPILSENPDINALYGLDRKKA------KAGERKLA----- 69 (344)
T ss_pred CEEEEEeccccceeeHHHHHHHHHHHCCCCEEEEEECcChHHHHhcCCCccEEEEeChhhh------cchHHHHH-----
Confidence 68999999999999999999999997 89999999976655555446664 344431100 00000011
Q ss_pred chhHHHHHHHHHHhhcCCCCCceEEEecCccchHHHHHHHhCCceEE
Q 046167 87 CREPFRNWLVQMIKEQQPGDEIVCIIYDEVMYFAEASASQLNVQSII 133 (424)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~pDlvi~d~~~~~~~~~A~~lgiP~v~ 133 (424)
....++..+++. ++|++|.-........++...|.|.-+
T Consensus 70 ---~~~~l~~~lr~~-----~yD~vidl~~~~~s~ll~~l~~a~~ri 108 (344)
T TIGR02201 70 ---NQFHLIKVLRAN-----RYDLVVNLTDQWMVAILVKLLNARVKI 108 (344)
T ss_pred ---HHHHHHHHHHhC-----CCCEEEECCcchHHHHHHHhcCCCeEE
Confidence 111244555544 899999765556667888888999765
No 144
>PF13579 Glyco_trans_4_4: Glycosyl transferase 4-like domain; PDB: 3C4Q_B 3C4V_A 3C48_B 1Z2T_A.
Probab=96.45 E-value=0.0059 Score=50.44 Aligned_cols=97 Identities=13% Similarity=0.141 Sum_probs=47.0
Q ss_pred HHHHHHHHHHhCCCeEEEEeCCCCCCC-CCCCCCceEEeCCCCCCCCccccccHHHHHHHHHHhchhHHHHHHHHHHhhc
Q 046167 24 PMLQLGTILHSKGFSITVVHTQFNSPN-PSNHPEFEFQSIPDGLMDVNISARNLVDSILLLNENCREPFRNWLVQMIKEQ 102 (424)
Q Consensus 24 p~~~la~~L~~~Gh~V~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (424)
-+..|+++|.++||+|++++....... .....++.+..++-.-... .......+. .+..++ ...+.
T Consensus 6 ~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~--------~~~~~l-~~~~~- 72 (160)
T PF13579_consen 6 YVRELARALAARGHEVTVVTPQPDPEDDEEEEDGVRVHRLPLPRRPW---PLRLLRFLR--------RLRRLL-AARRE- 72 (160)
T ss_dssp HHHHHHHHHHHTT-EEEEEEE---GGG-SEEETTEEEEEE--S-SSS---GGGHCCHHH--------HHHHHC-HHCT--
T ss_pred HHHHHHHHHHHCCCEEEEEecCCCCcccccccCCceEEeccCCccch---hhhhHHHHH--------HHHHHH-hhhcc-
Confidence 467899999999999999998633332 1223577777776221110 000111111 111222 11111
Q ss_pred CCCCCceEEEecCcc--chHHHHHHHhCCceEEEecc
Q 046167 103 QPGDEIVCIIYDEVM--YFAEASASQLNVQSIILRTS 137 (424)
Q Consensus 103 ~~~~~pDlvi~d~~~--~~~~~~A~~lgiP~v~~~~~ 137 (424)
+||+|.+.... ..+..+.+..++|++...+.
T Consensus 73 ----~~Dvv~~~~~~~~~~~~~~~~~~~~p~v~~~h~ 105 (160)
T PF13579_consen 73 ----RPDVVHAHSPTAGLVAALARRRRGIPLVVTVHG 105 (160)
T ss_dssp ------SEEEEEHHHHHHHHHHHHHHHT--EEEE-SS
T ss_pred ----CCeEEEecccchhHHHHHHHHccCCcEEEEECC
Confidence 89999998643 22333343889999998775
No 145
>KOG2941 consensus Beta-1,4-mannosyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=96.42 E-value=0.78 Score=42.53 Aligned_cols=349 Identities=13% Similarity=0.139 Sum_probs=175.8
Q ss_pred CceEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCCCC--CCCCCCCCCceEEeCCCCCCCCccccccHHHHHHHHHH
Q 046167 8 RRRVVLVPSPHQGHINPMLQLGTILHSKGFSITVVHTQFN--SPNPSNHPEFEFQSIPDGLMDVNISARNLVDSILLLNE 85 (424)
Q Consensus 8 ~~ril~~~~~~~GH~~p~~~la~~L~~~Gh~V~~~~~~~~--~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (424)
++|+.++..|--||--+|.-=|..|++.|.+|.+++.... .+..-..++++++.++.- +.......-..-.++.++.
T Consensus 12 k~ra~vvVLGDvGRSPRMqYHA~Sla~~gf~VdliGy~~s~p~e~l~~hprI~ih~m~~l-~~~~~~p~~~~l~lKvf~Q 90 (444)
T KOG2941|consen 12 KKRAIVVVLGDVGRSPRMQYHALSLAKLGFQVDLIGYVESIPLEELLNHPRIRIHGMPNL-PFLQGGPRVLFLPLKVFWQ 90 (444)
T ss_pred cceEEEEEecccCCChHHHHHHHHHHHcCCeEEEEEecCCCChHHHhcCCceEEEeCCCC-cccCCCchhhhhHHHHHHH
Confidence 4789999999999999999999999999999999987422 222334688999998832 1111111111112233332
Q ss_pred hchhHHHHHHHHHHhhcCCCCCceEEEecC-ccchHHHHH----HHhCCceEEEecchHHHHHHHHhhhcccccCCCCC-
Q 046167 86 NCREPFRNWLVQMIKEQQPGDEIVCIIYDE-VMYFAEASA----SQLNVQSIILRTSGAVTVVARLVLFQLKEEGYNPL- 159 (424)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~pDlvi~d~-~~~~~~~~A----~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~~~p~- 159 (424)
.+ . ++-.+... . ++|.|+.-. -+.....+| ...|..+++=++...+.......... ..|.
T Consensus 91 fl-~----Ll~aL~~~--~--~~~~ilvQNPP~iPtliv~~~~~~l~~~KfiIDWHNy~Ysl~l~~~~g~-----~h~lV 156 (444)
T KOG2941|consen 91 FL-S----LLWALFVL--R--PPDIILVQNPPSIPTLIVCVLYSILTGAKFIIDWHNYGYSLQLKLKLGF-----QHPLV 156 (444)
T ss_pred HH-H----HHHHHHhc--c--CCcEEEEeCCCCCchHHHHHHHHHHhcceEEEEehhhHHHHHHHhhcCC-----CCchH
Confidence 11 1 22222221 1 789888753 233333333 45588999888876665221111111 0110
Q ss_pred Ch----------------hHHHHHHH--hhhcc-CCceEEecChhhhhHHHHHHHHhccCCCeeeec----ccccCCCCC
Q 046167 160 KE----------------SYVQLINN--AYSAR-TSSAVISNTIYCLEESVLSQLQQYFKVPNFPIG----PLHKFAPSS 216 (424)
Q Consensus 160 ~~----------------~~~~~~~~--~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vG----p~~~~~~~~ 216 (424)
.. --.+..++ .+.+. ....++.+.-+.-+ ..++...+. +..++ |+..+.+.
T Consensus 157 ~l~~~~E~~fgk~a~~nLcVT~AMr~dL~qnWgi~ra~v~YDrPps~~-~~l~~~H~l----f~~l~~d~~~f~ar~~q- 230 (444)
T KOG2941|consen 157 RLVRWLEKYFGKLADYNLCVTKAMREDLIQNWGINRAKVLYDRPPSKP-TPLDEQHEL----FMKLAGDHSPFRAREPQ- 230 (444)
T ss_pred HHHHHHHHHhhcccccchhhHHHHHHHHHHhcCCceeEEEecCCCCCC-CchhHHHHH----Hhhhccccchhhhcccc-
Confidence 00 00222222 11122 12222222211100 000000000 00111 11111110
Q ss_pred CCCCcccccccccc----cccCCCCeEEEEEeCCcccCCHHHHHHHHHHHHhC---------CC-CeEEEEcCCCCCCCc
Q 046167 217 NGSLLKEDTSCISW----LNNQSPKSVIYVSLGSVASMDKKELEEMAWGLVNS---------KQ-PFLWVIRPRTNNAPE 282 (424)
Q Consensus 217 ~~~~~~~~~~l~~~----l~~~~~~~~I~vs~Gs~~~~~~~~~~~~~~a~~~~---------~~-~~i~~~~~~~~~~~~ 282 (424)
........-..+. ....+.++.++||.-|-. +.+-+..+++|+... +. .++.++.+.+
T Consensus 231 -~~~~~~taf~~k~~s~~v~~~~~~pallvsSTswT--pDEdf~ILL~AL~~y~~~~~~~~~~lP~llciITGKG----- 302 (444)
T KOG2941|consen 231 -DKALERTAFTKKDASGDVQLLPERPALLVSSTSWT--PDEDFGILLEALVIYEEQLYDKTHNLPSLLCIITGKG----- 302 (444)
T ss_pred -cchhhhhhHhhhcccchhhhccCCCeEEEecCCCC--CcccHHHHHHHHHhhhhhhhhccCCCCcEEEEEcCCC-----
Confidence 0000000000001 111245678888743333 666777777777621 22 3455554432
Q ss_pred ccccCchhHHHH----hcCCCcee-eec---chhhhhccccccccccccchh-----hHHHhhhcCCceeecCcccchhh
Q 046167 283 GIELLPKVLAED----VQENGYIV-KWA---PQKEVLSHVAVGGFWSHCGWN-----STLESICEGVPMICMPFFEDQKV 349 (424)
Q Consensus 283 ~~~~l~~~~~~~----~~~nv~v~-~~i---p~~~ll~~~~~~~~i~hgG~~-----t~~eal~~GvP~v~~P~~~DQ~~ 349 (424)
.+.+.+... .-.+|.+. .|. ++..+|..+|++..+|-...| .+..-.-+|+|++.+-+ +-
T Consensus 303 ---PlkE~Y~~~I~~~~~~~v~~~tpWL~aEDYP~ll~saDlGVcLHtSSSGLDLPMKVVDMFGcglPvcA~~f----kc 375 (444)
T KOG2941|consen 303 ---PLKEKYSQEIHEKNLQHVQVCTPWLEAEDYPKLLASADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVNF----KC 375 (444)
T ss_pred ---chhHHHHHHHHHhcccceeeeecccccccchhHhhccccceEeeecCcccCcchhHHHhhcCCCceeeecc----hh
Confidence 244443322 22577776 887 455699999998888876655 56777888999988743 44
Q ss_pred HHHHHHhhhhcceecCcccchHHHHHHHHHHhc----ccc-hHHHHHHHHHH
Q 046167 350 NARYLSHVWGVGLELEHELERGAVEKAVRKLTV----DKE-GEFLRQRAAQL 396 (424)
Q Consensus 350 na~~~~~~~G~g~~~~~~~~~~~L~~ai~~ll~----~~~-~~~~~~~a~~l 396 (424)
.-..++++ .-|+... +.++|++.++-+.+ |.+ ...+|+++++-
T Consensus 376 l~ELVkh~-eNGlvF~---Ds~eLa~ql~~lf~~fp~~a~~l~~lkkn~~e~ 423 (444)
T KOG2941|consen 376 LDELVKHG-ENGLVFE---DSEELAEQLQMLFKNFPDNADELNQLKKNLREE 423 (444)
T ss_pred HHHHHhcC-CCceEec---cHHHHHHHHHHHHhcCCCCHHHHHHHHHhhHHH
Confidence 45566664 5666655 67888888888887 322 23455555543
No 146
>cd03788 GT1_TPS Trehalose-6-Phosphate Synthase (TPS) is a glycosyltransferase that catalyses the synthesis of alpha,alpha-1,1-trehalose-6-phosphate from glucose-6-phosphate using a UDP-glucose donor. It is a key enzyme in the trehalose synthesis pathway. Trehalose is a nonreducing disaccharide present in a wide variety of organisms and may serve as a source of energy and carbon. It is characterized most notably in insect, plant, and microbial cells. Its production is often associated with a variety of stress conditions, including desiccation, dehydration, heat, cold, and oxidation. This family represents the catalytic domain of the TPS. Some members of this domain family coexist with a C-terminal trehalose phosphatase domain.
Probab=96.37 E-value=0.42 Score=47.48 Aligned_cols=103 Identities=19% Similarity=0.145 Sum_probs=63.0
Q ss_pred eeecchhh---hhcccccccccc---ccch-hhHHHhhhcCCc----eeecCcccchhhHHHHHHhhhhcceecCcccch
Q 046167 302 VKWAPQKE---VLSHVAVGGFWS---HCGW-NSTLESICEGVP----MICMPFFEDQKVNARYLSHVWGVGLELEHELER 370 (424)
Q Consensus 302 ~~~ip~~~---ll~~~~~~~~i~---hgG~-~t~~eal~~GvP----~v~~P~~~DQ~~na~~~~~~~G~g~~~~~~~~~ 370 (424)
.+++++.+ +++.+++ +|. +-|+ .++.||+++|+| +|+.-..+- + +.. .-|..+++ .+.
T Consensus 346 ~g~v~~~el~~~y~~aDv--~v~pS~~Eg~~lv~lEAma~g~p~~g~vV~S~~~G~----~---~~~-~~g~lv~p-~d~ 414 (460)
T cd03788 346 YRSLPREELAALYRAADV--ALVTPLRDGMNLVAKEYVACQDDDPGVLILSEFAGA----A---EEL-SGALLVNP-YDI 414 (460)
T ss_pred eCCCCHHHHHHHHHhccE--EEeCccccccCcccceeEEEecCCCceEEEeccccc----h---hhc-CCCEEECC-CCH
Confidence 36777665 6877787 664 2354 466999999999 555433221 1 111 33566666 689
Q ss_pred HHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHH
Q 046167 371 GAVEKAVRKLTVDKEGEFLRQRAAQLKEEVELSTRKGGFSYNSLNELLDLI 421 (424)
Q Consensus 371 ~~L~~ai~~ll~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~a~~~~~~~~ 421 (424)
++++++|.++++++. +..+++.++..+.+. . -+...-++.++..+
T Consensus 415 ~~la~ai~~~l~~~~-~e~~~~~~~~~~~v~-~----~~~~~w~~~~l~~l 459 (460)
T cd03788 415 DEVADAIHRALTMPL-EERRERHRKLREYVR-T----HDVQAWANSFLDDL 459 (460)
T ss_pred HHHHHHHHHHHcCCH-HHHHHHHHHHHHHHH-h----CCHHHHHHHHHHhh
Confidence 999999999998742 222333333333333 2 56667777776654
No 147
>TIGR02195 heptsyl_trn_II lipopolysaccharide heptosyltransferase II. This family consists of examples of ADP-heptose:LPS heptosyltransferase II, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=96.32 E-value=0.27 Score=46.53 Aligned_cols=101 Identities=13% Similarity=0.106 Sum_probs=67.4
Q ss_pred eEEEEcCCCccChHHHHHHHHHHHhC--CCeEEEEeCCCCCCCCCCCCCceEE-eCCCCCCCCccccccHHHHHHHHHHh
Q 046167 10 RVVLVPSPHQGHINPMLQLGTILHSK--GFSITVVHTQFNSPNPSNHPEFEFQ-SIPDGLMDVNISARNLVDSILLLNEN 86 (424)
Q Consensus 10 ril~~~~~~~GH~~p~~~la~~L~~~--Gh~V~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (424)
|||++-....|++.=..++.++|++. +.+|+|++.+.........+.+.-+ .++.. ......
T Consensus 1 rILii~~~~iGD~i~~~p~l~~Lk~~~P~a~I~~l~~~~~~~l~~~~p~id~v~~~~~~--------~~~~~~------- 65 (334)
T TIGR02195 1 KILVIGPSWVGDMVMAQSLYRLLKKRYPQAVIDVLAPAWCRPLLERMPEIRQAIDMPLG--------HGALEL------- 65 (334)
T ss_pred CEEEEccchhHHHHHHHHHHHHHHHHCCCCEEEEEechhhHHHHhcCchhceeeecCCc--------ccchhh-------
Confidence 68999999999999999999999997 9999999987555554444555433 22211 000000
Q ss_pred chhHHHHHHHHHHhhcCCCCCceEEEecCccchHHHHHHHhCCceE
Q 046167 87 CREPFRNWLVQMIKEQQPGDEIVCIIYDEVMYFAEASASQLNVQSI 132 (424)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~pDlvi~d~~~~~~~~~A~~lgiP~v 132 (424)
.....+++.+++. ++|++|.-....-...++...++|.-
T Consensus 66 --~~~~~~~~~lr~~-----~yD~vi~l~~~~~s~ll~~~~~~~~r 104 (334)
T TIGR02195 66 --TERRRLGRSLREE-----RYDQAIVLPNSLKSALIPFFAGIPHR 104 (334)
T ss_pred --hHHHHHHHHHhhc-----CCCEEEECCCCHHHHHHHHHcCCCce
Confidence 0112345555554 89999986655556667777788864
No 148
>cd03789 GT1_LPS_heptosyltransferase Lipopolysaccharide heptosyltransferase is involved in the biosynthesis of lipooligosaccharide (LOS). Lipopolysaccharide (LPS) is a major component of the outer membrane of gram-negative bacteria. LPS heptosyltransferase transfers heptose molecules from ADP-heptose to 3-deoxy-D-manno-octulosonic acid (KDO), a part of the inner core component of LPS. This family belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=96.26 E-value=0.31 Score=44.82 Aligned_cols=101 Identities=14% Similarity=0.062 Sum_probs=64.7
Q ss_pred eEEEEcCCCccChHHHHHHHHHHHhCC--CeEEEEeCCCCCCCCCCCCCceE-EeCCCCCCCCccccccHHHHHHHHHHh
Q 046167 10 RVVLVPSPHQGHINPMLQLGTILHSKG--FSITVVHTQFNSPNPSNHPEFEF-QSIPDGLMDVNISARNLVDSILLLNEN 86 (424)
Q Consensus 10 ril~~~~~~~GH~~p~~~la~~L~~~G--h~V~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (424)
|||++-..+.|++.-+.++.++|+++. -+|++++.+.........+.++- ..++... .....
T Consensus 1 kILii~~~~iGD~i~~~p~l~~Lk~~~P~~~I~~l~~~~~~~l~~~~p~id~v~~~~~~~-----~~~~~---------- 65 (279)
T cd03789 1 RILVIRLSWIGDVVLATPLLRALKARYPDARITVLAPPWFAPLLELMPEVDRVIVLPKKH-----GKLGL---------- 65 (279)
T ss_pred CEEEEecccHHHHHHHHHHHHHHHHHCCCCEEEEEEChhhHHHHhcCCccCEEEEcCCcc-----cccch----------
Confidence 688999999999999999999999974 89999999755555444455533 3333110 00011
Q ss_pred chhHHHHHHHHHHhhcCCCCCceEEEecCccchHHHHHHHhCCceE
Q 046167 87 CREPFRNWLVQMIKEQQPGDEIVCIIYDEVMYFAEASASQLNVQSI 132 (424)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~pDlvi~d~~~~~~~~~A~~lgiP~v 132 (424)
..+..++..+++. ++|+++.-........++...+++..
T Consensus 66 --~~~~~~~~~l~~~-----~~D~vi~~~~~~~~~~~~~~~~~~~~ 104 (279)
T cd03789 66 --GARRRLARALRRR-----RYDLAIDLQGSLRSALLPFLAGAPRR 104 (279)
T ss_pred --HHHHHHHHHHhhc-----CCCEEEECCCccHHHHHHHHhCCCeE
Confidence 1122345555544 79999976555444455666666654
No 149
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=96.22 E-value=0.11 Score=51.27 Aligned_cols=107 Identities=14% Similarity=0.138 Sum_probs=73.6
Q ss_pred CCCeEEEEEeCCcccCCHHHHHHHHHHHHhCCCCeEEEEcCCCCCCCcccccCchhHHHHhc---CCCceeeecchhh--
Q 046167 235 SPKSVIYVSLGSVASMDKKELEEMAWGLVNSKQPFLWVIRPRTNNAPEGIELLPKVLAEDVQ---ENGYIVKWAPQKE-- 309 (424)
Q Consensus 235 ~~~~~I~vs~Gs~~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~---~nv~v~~~ip~~~-- 309 (424)
+++-+||++++......++.++.=...++..+--++|...++...+- -..+.+ ..++-+ ++.++.+-.|..+
T Consensus 427 p~~avVf~c~~n~~K~~pev~~~wmqIL~~vP~Svl~L~~~~~~~~~--~~~l~~-la~~~Gv~~eRL~f~p~~~~~~h~ 503 (620)
T COG3914 427 PEDAVVFCCFNNYFKITPEVFALWMQILSAVPNSVLLLKAGGDDAEI--NARLRD-LAEREGVDSERLRFLPPAPNEDHR 503 (620)
T ss_pred CCCeEEEEecCCcccCCHHHHHHHHHHHHhCCCcEEEEecCCCcHHH--HHHHHH-HHHHcCCChhheeecCCCCCHHHH
Confidence 55679999999999888999998888888888889999876522110 001111 111211 5666777777554
Q ss_pred -hhcccccccccc---ccchhhHHHhhhcCCceeecCcccchh
Q 046167 310 -VLSHVAVGGFWS---HCGWNSTLESICEGVPMICMPFFEDQK 348 (424)
Q Consensus 310 -ll~~~~~~~~i~---hgG~~t~~eal~~GvP~v~~P~~~DQ~ 348 (424)
-+..+|+ |+- .||.+|+.|+|..|+|+|..+ |+|+
T Consensus 504 a~~~iADl--vLDTyPY~g~TTa~daLwm~vPVlT~~--G~~F 542 (620)
T COG3914 504 ARYGIADL--VLDTYPYGGHTTASDALWMGVPVLTRV--GEQF 542 (620)
T ss_pred Hhhchhhe--eeecccCCCccchHHHHHhcCceeeec--cHHH
Confidence 3334554 654 599999999999999999874 4664
No 150
>COG0859 RfaF ADP-heptose:LPS heptosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=96.04 E-value=0.59 Score=44.32 Aligned_cols=263 Identities=14% Similarity=0.062 Sum_probs=136.7
Q ss_pred ceEEEEcCCCccChHHHHHHHHHHHhC--CCeEEEEeCCCCCCCCCCCCCceEEeCCCCCCCCccccccHHHHHHHHHHh
Q 046167 9 RRVVLVPSPHQGHINPMLQLGTILHSK--GFSITVVHTQFNSPNPSNHPEFEFQSIPDGLMDVNISARNLVDSILLLNEN 86 (424)
Q Consensus 9 ~ril~~~~~~~GH~~p~~~la~~L~~~--Gh~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (424)
|||+++-....|++.=..++-+.|+++ +.+++|++.+.........+.++-+..-... ... .
T Consensus 2 ~kIliir~~~iGD~vlt~p~~~~lk~~~P~a~i~~~~~~~~~~i~~~~p~I~~vi~~~~~------~~~----------~ 65 (334)
T COG0859 2 MKILVIRLSKLGDVVLTLPLLRTLKKAYPNAKIDVLVPKGFAPILKLNPEIDKVIIIDKK------KKG----------L 65 (334)
T ss_pred ceEEEEeccchhHHHhHHHHHHHHHHHCCCCEEEEEeccchHHHHhcChHhhhhcccccc------ccc----------c
Confidence 699999999999999999999999998 5999999997666655544444433321110 001 1
Q ss_pred chhHHHHHHHHHHhhcCCCCCceEEEecCccchHHHHHHHhCCceEEEecc-hHHHHHHHHhhhcccccCCCCCChhHHH
Q 046167 87 CREPFRNWLVQMIKEQQPGDEIVCIIYDEVMYFAEASASQLNVQSIILRTS-GAVTVVARLVLFQLKEEGYNPLKESYVQ 165 (424)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~pDlvi~d~~~~~~~~~A~~lgiP~v~~~~~-~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 165 (424)
.......+.+.+++. ++|+||.=....-...++...++|.-.-... ..........
T Consensus 66 ~~~~~~~l~~~lr~~-----~yD~vidl~~~~ksa~l~~~~~~~~r~g~~~~~~r~~~~~~~------------------ 122 (334)
T COG0859 66 GLKERLALLRTLRKE-----RYDAVIDLQGLLKSALLALLLGIPFRIGFDKKSARELLLNKF------------------ 122 (334)
T ss_pred chHHHHHHHHHhhcc-----CCCEEEECcccHHHHHHHHHhCCCcccccccccchhHHHHHh------------------
Confidence 111222345555543 7999997665566667777888887653321 1100000000
Q ss_pred HHHHhhhccCCceEEecChhhhhHHHHHHHHhccCCCeeeecccccCCCCCCCCCccccccccccccc--CCCCeEEEEE
Q 046167 166 LINNAYSARTSSAVISNTIYCLEESVLSQLQQYFKVPNFPIGPLHKFAPSSNGSLLKEDTSCISWLNN--QSPKSVIYVS 243 (424)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vGp~~~~~~~~~~~~~~~~~~l~~~l~~--~~~~~~I~vs 243 (424)
... +..+..........+...... ......... .++.......+... ...++.|.+.
T Consensus 123 --------~~~--~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~i~i~ 181 (334)
T COG0859 123 --------YPR--LDKPEGQHVVERYLALLEDLG-LYPPPEPQL----------DFPLPRPPIELAKNLAKFDRPYIVIN 181 (334)
T ss_pred --------hhc--cCcccchhHHHHHHHHHHHhc-CCCCCCCcc----------CcccccCHHHHHHHHHhcCCCeEEEe
Confidence 000 000001111111222222111 000000000 11111111111111 1116799999
Q ss_pred eC-Cccc---CCHHHHHHHHHHHHhCCCCeEEEEcCCCCCCCcccccCchhHHHHhcCCCceeeecc--hh-hhhccccc
Q 046167 244 LG-SVAS---MDKKELEEMAWGLVNSKQPFLWVIRPRTNNAPEGIELLPKVLAEDVQENGYIVKWAP--QK-EVLSHVAV 316 (424)
Q Consensus 244 ~G-s~~~---~~~~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~nv~v~~~ip--~~-~ll~~~~~ 316 (424)
.| +... .+.+.+..+++.+.+.+..+++.. +. .. ...-+.+.+..+..+.+.+-.+ +. .++.++++
T Consensus 182 pg~s~~~~K~wp~e~~~~l~~~l~~~~~~Vvl~g-~~--~e----~e~~~~i~~~~~~~~~l~~k~sL~e~~~li~~a~l 254 (334)
T COG0859 182 PGASRGSAKRWPLEHYAELAELLIAKGYQVVLFG-GP--DE----EERAEEIAKGLPNAVILAGKTSLEELAALIAGADL 254 (334)
T ss_pred ccccccccCCCCHHHHHHHHHHHHHCCCEEEEec-Ch--HH----HHHHHHHHHhcCCccccCCCCCHHHHHHHHhcCCE
Confidence 99 4433 678999999999998885554333 21 00 1122222222333322444433 33 37767775
Q ss_pred cccccccchhhHHHhhhcCCceeec
Q 046167 317 GGFWSHCGWNSTLESICEGVPMICM 341 (424)
Q Consensus 317 ~~~i~hgG~~t~~eal~~GvP~v~~ 341 (424)
||+. -.|-++=|.+.|+|.|.+
T Consensus 255 --~I~~-DSg~~HlAaA~~~P~I~i 276 (334)
T COG0859 255 --VIGN-DSGPMHLAAALGTPTIAL 276 (334)
T ss_pred --EEcc-CChHHHHHHHcCCCEEEE
Confidence 6653 567788899999999975
No 151
>PF13439 Glyco_transf_4: Glycosyltransferase Family 4; PDB: 2JJM_E 3MBO_C 2GEJ_A 2GEK_A.
Probab=95.83 E-value=0.18 Score=42.10 Aligned_cols=102 Identities=13% Similarity=0.133 Sum_probs=50.8
Q ss_pred CccChHHHHHHHHHHHhCCCeEEEEeCCCCCCCCCCCCCceEEeCCCCCCCCccccccHHHHHHHHHHhchhHHHHHHHH
Q 046167 18 HQGHINPMLQLGTILHSKGFSITVVHTQFNSPNPSNHPEFEFQSIPDGLMDVNISARNLVDSILLLNENCREPFRNWLVQ 97 (424)
Q Consensus 18 ~~GH~~p~~~la~~L~~~Gh~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (424)
.+|--.-+..|+++|+++||+|++++.......... ........... ........+.. ...+...+++
T Consensus 11 ~GG~e~~~~~l~~~l~~~G~~v~v~~~~~~~~~~~~----~~~~~~~~~~~---~~~~~~~~~~~-----~~~~~~~i~~ 78 (177)
T PF13439_consen 11 IGGAERVVLNLARALAKRGHEVTVVSPGVKDPIEEE----LVKIFVKIPYP---IRKRFLRSFFF-----MRRLRRLIKK 78 (177)
T ss_dssp SSHHHHHHHHHHHHHHHTT-EEEEEESS-TTS-SST----EEEE---TT-S---STSS--HHHHH-----HHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHCCCEEEEEEcCCCccchhh----ccceeeeeecc---cccccchhHHH-----HHHHHHHHHH
Confidence 445556788999999999999999988533333221 11111100000 00111111111 1223334555
Q ss_pred HHhhcCCCCCceEEEecCcc-chHHHHHHHhCCceEEEecchHH
Q 046167 98 MIKEQQPGDEIVCIIYDEVM-YFAEASASQLNVQSIILRTSGAV 140 (424)
Q Consensus 98 ~~~~~~~~~~pDlvi~d~~~-~~~~~~A~~lgiP~v~~~~~~~~ 140 (424)
. +||+|.+.... .+....+.. ++|.+.+.+..+.
T Consensus 79 ~--------~~DiVh~~~~~~~~~~~~~~~-~~~~v~~~H~~~~ 113 (177)
T PF13439_consen 79 E--------KPDIVHIHGPPAFWIALLACR-KVPIVYTIHGPYF 113 (177)
T ss_dssp H--------T-SEEECCTTHCCCHHHHHHH-CSCEEEEE-HHH-
T ss_pred c--------CCCeEEecccchhHHHHHhcc-CCCEEEEeCCCcc
Confidence 5 89999666544 333333333 9999999887663
No 152
>PF06722 DUF1205: Protein of unknown function (DUF1205); InterPro: IPR010610 This entry represents a conserved region of unknown function within bacterial glycosyl transferases. Many proteins containing this domain are members of the glycosyl transferase family 28 IPR004276 from INTERPRO.; PDB: 3OTH_A 3OTG_A 3OTI_A 3D0R_A 3D0Q_B 2P6P_A 3UYK_A 3UYL_B 3TSA_B 2YJN_A.
Probab=95.53 E-value=0.018 Score=43.47 Aligned_cols=52 Identities=15% Similarity=0.221 Sum_probs=42.5
Q ss_pred ccccccccCCCCeEEEEEeCCcccC---C--HHHHHHHHHHHHhCCCCeEEEEcCCC
Q 046167 226 SCISWLNNQSPKSVIYVSLGSVASM---D--KKELEEMAWGLVNSKQPFLWVIRPRT 277 (424)
Q Consensus 226 ~l~~~l~~~~~~~~I~vs~Gs~~~~---~--~~~~~~~~~a~~~~~~~~i~~~~~~~ 277 (424)
.+..|+...+.++.|+||+||.... . ...+..++++++.++..+|+.+....
T Consensus 29 ~~P~Wl~~~~~RpRVcvT~G~~~~~~~g~~~~~~l~~ll~ala~ldvEvV~a~~~~~ 85 (97)
T PF06722_consen 29 VVPDWLLEPPGRPRVCVTLGTSVRMFFGPGGVPLLRRLLEALAGLDVEVVVALPAAQ 85 (97)
T ss_dssp EEEGGGSSSTSSEEEEEEETHHHCHHHSCHHHCHHHHHHHHHHTSSSEEEEEETTCC
T ss_pred CCCcccccCCCCCEEEEEcCCCccccccccchHHHHHHHHHHhhCCcEEEEECCHHH
Confidence 3667988888999999999998863 2 24888899999999999998886543
No 153
>PF01975 SurE: Survival protein SurE; InterPro: IPR002828 This entry represents a SurE-like structural domain with a 3-layer alpha/bete/alpha topology that bears some topological similarity to the N-terminal domain of the glutaminase/asparaginase family. This domain is found in the stationary phase survival protein SurE, a metal ion-dependent phosphatase found in eubacteria, archaea and eukaryotes. In Escherichia coli, SurE also has activity as a nucleotidase and exopolyphosphatase, and may be involved in the stress response []. E. coli cells with mutations in the surE gene survive poorly in stationary phase []. The structure of SurE homologues have been determined from Thermotoga maritima [] and the archaea Pyrobaculum aerophilum []. The T. maritima SurE homologue has phosphatase activity that is inhibited by vanadate or tungstate, both of which bind adjacent to the divalent metal ion. This domain is found in acid phosphatases (3.1.3.2 from EC), 5'-nucleotidases (3.1.3.5 from EC), 3'-nucleotidases (3.1.3.6 from EC) and exopolyphosphatases (3.6.1.11 from EC).; GO: 0016787 hydrolase activity; PDB: 1L5X_B 2V4O_D 2V4N_A 2WQK_B 2E6G_G 2E69_D 2E6C_C 2E6B_D 2E6E_A 2E6H_A ....
Probab=95.44 E-value=0.12 Score=44.72 Aligned_cols=115 Identities=14% Similarity=0.151 Sum_probs=61.4
Q ss_pred ceEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCCCCCCCCCC----CCCceEEeCCCCCCC-C--c-cccccHHHHH
Q 046167 9 RRVVLVPSPHQGHINPMLQLGTILHSKGFSITVVHTQFNSPNPSN----HPEFEFQSIPDGLMD-V--N-ISARNLVDSI 80 (424)
Q Consensus 9 ~ril~~~~~~~GH~~p~~~la~~L~~~Gh~V~~~~~~~~~~~~~~----~~g~~~~~~~~~~~~-~--~-~~~~~~~~~~ 80 (424)
||||+.-=.|. +.--+.+|+++|++.||+|+++++..++..... ...++......+... + . .-...+.+-.
T Consensus 1 M~ILlTNDDGi-~a~Gi~aL~~~L~~~g~~V~VvAP~~~~Sg~g~sit~~~pl~~~~~~~~~~~~~~~~~~v~GTPaDcv 79 (196)
T PF01975_consen 1 MRILLTNDDGI-DAPGIRALAKALSALGHDVVVVAPDSEQSGTGHSITLHKPLRVTEVEPGHDPGGVEAYAVSGTPADCV 79 (196)
T ss_dssp SEEEEE-SS-T-TSHHHHHHHHHHTTTSSEEEEEEESSSTTTSTTS--SSSEEEEEEEE-TTCCSTTEEEEESS-HHHHH
T ss_pred CeEEEEcCCCC-CCHHHHHHHHHHHhcCCeEEEEeCCCCCcCcceeecCCCCeEEEEEEecccCCCCCEEEEcCcHHHHH
Confidence 67888776555 445577899999888999999999755544221 123344332111111 1 1 1122222222
Q ss_pred HHHHHhchhHHHHHHHHHHhhcCCCCCceEEEec----------Ccc---chHHHHHHHhCCceEEEecchH
Q 046167 81 LLLNENCREPFRNWLVQMIKEQQPGDEIVCIIYD----------EVM---YFAEASASQLNVQSIILRTSGA 139 (424)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~pDlvi~d----------~~~---~~~~~~A~~lgiP~v~~~~~~~ 139 (424)
... +..+... . +|||||+. .++ .+++.-|...|||.+.++....
T Consensus 80 ~~a-----------l~~~~~~--~--~pDLViSGiN~G~N~g~~v~~SGTVgAA~ea~~~GipaIA~S~~~~ 136 (196)
T PF01975_consen 80 KLA-----------LDGLLPD--K--KPDLVISGINHGANLGTDVLYSGTVGAAMEAALRGIPAIAVSLDSD 136 (196)
T ss_dssp HHH-----------HHCTSTT--S--S-SEEEEEEEES---GGGGGG-HHHHHHHHHHHTTSEEEEEEEESS
T ss_pred HHH-----------HHhhhcc--C--CCCEEEECCCCCccCCcCcccccHHHHHHHHHHcCCCeEEEecccc
Confidence 221 2222211 0 59999985 222 4455666788999999987643
No 154
>PF12000 Glyco_trans_4_3: Gkycosyl transferase family 4 group; InterPro: IPR022623 This presumed domain is functionally uncharacterised and found in bacteria. This region is about 170 amino acids in length and is found N-terminal to PF00534 from PFAM. There is a single completely conserved residue G that may be functionally important.
Probab=95.17 E-value=0.23 Score=41.73 Aligned_cols=95 Identities=8% Similarity=-0.083 Sum_probs=54.4
Q ss_pred hCCCeEEEEeCCCCCCCCCCCCCceEEeCCCCCCCCccccccHHHHHHHHHHhchhHHHHHHHHHHhhcCCCCCceEEEe
Q 046167 34 SKGFSITVVHTQFNSPNPSNHPEFEFQSIPDGLMDVNISARNLVDSILLLNENCREPFRNWLVQMIKEQQPGDEIVCIIY 113 (424)
Q Consensus 34 ~~Gh~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pDlvi~ 113 (424)
++||+|+++|....... . +|++.+.+...-.. ..........++.-...... +...+..|++. +. .||+||+
T Consensus 1 q~gh~v~fl~~~~~~~~-~--~GV~~~~y~~~~~~-~~~~~~~~~~~e~~~~rg~a-v~~a~~~L~~~-Gf--~PDvI~~ 72 (171)
T PF12000_consen 1 QRGHEVVFLTERKRPPI-P--PGVRVVRYRPPRGP-TPGTHPYVRDFEAAVLRGQA-VARAARQLRAQ-GF--VPDVIIA 72 (171)
T ss_pred CCCCEEEEEecCCCCCC-C--CCcEEEEeCCCCCC-CCCCCcccccHHHHHHHHHH-HHHHHHHHHHc-CC--CCCEEEE
Confidence 47999999996433322 2 58888888741111 11111111222222111111 22244555554 33 8999999
Q ss_pred cCccchHHHHHHHh-CCceEEEec
Q 046167 114 DEVMYFAEASASQL-NVQSIILRT 136 (424)
Q Consensus 114 d~~~~~~~~~A~~l-giP~v~~~~ 136 (424)
++..-.++.+-+.+ ++|.+.+.=
T Consensus 73 H~GWGe~Lflkdv~P~a~li~Y~E 96 (171)
T PF12000_consen 73 HPGWGETLFLKDVFPDAPLIGYFE 96 (171)
T ss_pred cCCcchhhhHHHhCCCCcEEEEEE
Confidence 98777777888888 899887643
No 155
>PF08660 Alg14: Oligosaccharide biosynthesis protein Alg14 like; InterPro: IPR013969 Alg14 is involved dolichol-linked oligosaccharide biosynthesis and anchors the catalytic subunit Alg13 to the ER membrane [].
Probab=95.11 E-value=0.2 Score=42.22 Aligned_cols=111 Identities=17% Similarity=0.108 Sum_probs=59.1
Q ss_pred EcCCCccChHHHHHHHHHH-Hh-CCCeEEEEeCCCCCCCC-----CC--CCCceEEeCCCCCCCCccccccHHHHHHHHH
Q 046167 14 VPSPHQGHINPMLQLGTIL-HS-KGFSITVVHTQFNSPNP-----SN--HPEFEFQSIPDGLMDVNISARNLVDSILLLN 84 (424)
Q Consensus 14 ~~~~~~GH~~p~~~la~~L-~~-~Gh~V~~~~~~~~~~~~-----~~--~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (424)
+-.+++||..-++.|.+.+ .+ ..++..+++........ ++ ....++..+|..- ..........+..+.
T Consensus 3 ~v~gsGGHt~eml~L~~~~~~~~~~~~~~ivt~~d~~S~~k~~~~~~~~~~~~~~~~~~r~r---~v~q~~~~~~~~~l~ 79 (170)
T PF08660_consen 3 VVLGSGGHTAEMLRLLKALDNDRYQPRTYIVTEGDKQSRSKAEQLEKSSSKRHKILEIPRAR---EVGQSYLTSIFTTLR 79 (170)
T ss_pred EEEcCcHHHHHHHHHHHHhhhhcCCCcEEEEEcCCcccHHHHHHHHHhccccceeeccceEE---EechhhHhhHHHHHH
Confidence 3456889999999999999 33 35666667664322220 00 0011233333110 001111111122221
Q ss_pred HhchhHHHHHHHHHHhhcCCCCCceEEEecCcc--chHHHHHHHh------CCceEEEecc
Q 046167 85 ENCREPFRNWLVQMIKEQQPGDEIVCIIYDEVM--YFAEASASQL------NVQSIILRTS 137 (424)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~pDlvi~d~~~--~~~~~~A~~l------giP~v~~~~~ 137 (424)
..+ ..+.-+.+. +||+||+..-. .....+|+.+ |.+.|.+.+.
T Consensus 80 ----~~~-~~~~il~r~-----rPdvii~nGpg~~vp~~~~~~l~~~~~~~~~kiIyIES~ 130 (170)
T PF08660_consen 80 ----AFL-QSLRILRRE-----RPDVIISNGPGTCVPVCLAAKLLRLLGLRGSKIIYIESF 130 (170)
T ss_pred ----HHH-HHHHHHHHh-----CCCEEEEcCCceeeHHHHHHHHHHHhhccCCcEEEEEee
Confidence 111 122333333 89999998644 5556789999 9999988664
No 156
>PLN03063 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=94.50 E-value=0.34 Score=51.48 Aligned_cols=97 Identities=13% Similarity=0.122 Sum_probs=62.9
Q ss_pred hhhcccccccccccc---chh-hHHHhhhcCCc----eeecCcccchhhHHHHHHhhhh-cceecCcccchHHHHHHHHH
Q 046167 309 EVLSHVAVGGFWSHC---GWN-STLESICEGVP----MICMPFFEDQKVNARYLSHVWG-VGLELEHELERGAVEKAVRK 379 (424)
Q Consensus 309 ~ll~~~~~~~~i~hg---G~~-t~~eal~~GvP----~v~~P~~~DQ~~na~~~~~~~G-~g~~~~~~~~~~~L~~ai~~ 379 (424)
.+++.+++ |+.-. |+| +..|++++|+| +|+.-+.+ .+. . +| -|+.+++ .+.++++++|.+
T Consensus 371 aly~~ADv--fvvtSlrEGmnLv~lEamA~g~p~~gvlVlSe~~G----~~~---~-l~~~allVnP-~D~~~lA~AI~~ 439 (797)
T PLN03063 371 ALYAITDV--MLVTSLRDGMNLVSYEFVACQKAKKGVLVLSEFAG----AGQ---S-LGAGALLVNP-WNITEVSSAIKE 439 (797)
T ss_pred HHHHhCCE--EEeCccccccCcchhhHheeecCCCCCEEeeCCcC----chh---h-hcCCeEEECC-CCHHHHHHHHHH
Confidence 47877887 66553 766 56899999999 44433322 222 1 23 5777777 799999999999
Q ss_pred HhcccchHHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHh
Q 046167 380 LTVDKEGEFLRQRAAQLKEEVELSTRKGGFSYNSLNELLDLIN 422 (424)
Q Consensus 380 ll~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~a~~~~~~~~~ 422 (424)
+|+.+. +.-+++.+++.+.+.. .+...-++.+++.++
T Consensus 440 aL~m~~-~er~~r~~~~~~~v~~-----~~~~~Wa~~fl~~l~ 476 (797)
T PLN03063 440 ALNMSD-EERETRHRHNFQYVKT-----HSAQKWADDFMSELN 476 (797)
T ss_pred HHhCCH-HHHHHHHHHHHHhhhh-----CCHHHHHHHHHHHHH
Confidence 998321 2344555555555544 456666777766654
No 157
>COG3660 Predicted nucleoside-diphosphate-sugar epimerase [Cell envelope biogenesis, outer membrane]
Probab=94.40 E-value=3.6 Score=36.84 Aligned_cols=250 Identities=15% Similarity=0.138 Sum_probs=123.2
Q ss_pred ceEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCCCCCCCCCCCCCceEEeCCCCCCCCccccccHHHHHHHHHHhch
Q 046167 9 RRVVLVPSPHQGHINPMLQLGTILHSKGFSITVVHTQFNSPNPSNHPEFEFQSIPDGLMDVNISARNLVDSILLLNENCR 88 (424)
Q Consensus 9 ~ril~~~~~~~GH~~p~~~la~~L~~~Gh~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (424)
|||-.++-+=.|-..-.++||+.|.+--+.|-.+.. + ...+.+++=... .+.
T Consensus 1 ~ki~aisD~RtGnt~QaiaLa~~l~r~eyttk~l~~--~--~l~~lP~~wl~~------------------------yp~ 52 (329)
T COG3660 1 MKIWAISDGRTGNTHQAIALAEQLTRSEYTTKLLEY--N--NLAKLPNFWLAY------------------------YPI 52 (329)
T ss_pred CceEEeecCCCccHHHHHHHHHHhhccceEEEEeec--c--ccccCchhhhhc------------------------Ccc
Confidence 467778888889999999999999773333333322 1 111111111111 112
Q ss_pred hHHHHHHHHHHhhcCCCCCceEEEecCcc--chHHHHHHHhCCceEEEecchHHHHHHHHhhhcccccCCCCCChhHHHH
Q 046167 89 EPFRNWLVQMIKEQQPGDEIVCIIYDEVM--YFAEASASQLNVQSIILRTSGAVTVVARLVLFQLKEEGYNPLKESYVQL 166 (424)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~pDlvi~d~~~--~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 166 (424)
..+++++........+ ++||++|+-.+- +.+..+-+..|.+.++-...+-.+
T Consensus 53 ~~~~~l~~~~~~r~p~-~~Pdl~I~aGrrta~l~~~lkk~~~~~~vVqI~~Prlp------------------------- 106 (329)
T COG3660 53 HILRELFGPRLSRKPE-QRPDLIITAGRRTAPLAFYLKKKFGGIKVVQIQDPRLP------------------------- 106 (329)
T ss_pred HhHHHhhcCccccCcc-CCCceEEecccchhHHHHHHHHhcCCceEEEeeCCCCC-------------------------
Confidence 2233333332221111 169999987654 444456666776665543332111
Q ss_pred HHHhhhccCCceEEecChhhhhHHHHHHHHhccCCCeeeecccccCCCCCCCCCcccccccc-cccccCCCCeEEEEEeC
Q 046167 167 INNAYSARTSSAVISNTIYCLEESVLSQLQQYFKVPNFPIGPLHKFAPSSNGSLLKEDTSCI-SWLNNQSPKSVIYVSLG 245 (424)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vGp~~~~~~~~~~~~~~~~~~l~-~~l~~~~~~~~I~vs~G 245 (424)
...-+.++++-.+..+.. ..-+++++++-+....... .......+.. +.+.. .++.|=|-.|
T Consensus 107 ------~~~fDlvivp~HD~~~~~------s~~~~Nilpi~Gs~h~Vt~---~~lAa~~e~~~~~~p~--~rq~vAVlVG 169 (329)
T COG3660 107 ------YNHFDLVIVPYHDWREEL------SDQGPNILPINGSPHNVTS---QRLAALREAFKHLLPL--PRQRVAVLVG 169 (329)
T ss_pred ------cccceEEeccchhhhhhh------hccCCceeeccCCCCcccH---HHhhhhHHHHHhhCCC--CCceEEEEec
Confidence 122344555444333321 1122556665444333221 1111111112 22222 2333333333
Q ss_pred -Cccc--CCHHHHHH----HHHHHHhCCCCeEEEEcCCCCCCCcccccCchhHHHHhcCCC-----ce-----eeecchh
Q 046167 246 -SVAS--MDKKELEE----MAWGLVNSKQPFLWVIRPRTNNAPEGIELLPKVLAEDVQENG-----YI-----VKWAPQK 308 (424)
Q Consensus 246 -s~~~--~~~~~~~~----~~~a~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~nv-----~v-----~~~ip~~ 308 (424)
.... .+.+.... +...+++.+..++++.+.. .|+.+...+..|+ .+ .++=|+.
T Consensus 170 g~nk~f~~~~d~a~q~~~~l~k~l~~~g~~~lisfSRR----------Tp~~~~s~l~~~l~s~~~i~w~~~d~g~NPY~ 239 (329)
T COG3660 170 GNNKAFVFQEDKAHQFASLLVKILENQGGSFLISFSRR----------TPDTVKSILKNNLNSSPGIVWNNEDTGYNPYI 239 (329)
T ss_pred CCCCCCccCHHHHHHHHHHHHHHHHhCCceEEEEeecC----------CcHHHHHHHHhccccCceeEeCCCCCCCCchH
Confidence 3333 33333333 3455566788888887433 3444433222222 12 1445889
Q ss_pred hhhccccccccccccch-hhHHHhhhcCCceeec
Q 046167 309 EVLSHVAVGGFWSHCGW-NSTLESICEGVPMICM 341 (424)
Q Consensus 309 ~ll~~~~~~~~i~hgG~-~t~~eal~~GvP~v~~ 341 (424)
++|..++- +|.-... +-..||.+.|+|+.++
T Consensus 240 ~~La~Ady--ii~TaDSinM~sEAasTgkPv~~~ 271 (329)
T COG3660 240 DMLAAADY--IISTADSINMCSEAASTGKPVFIL 271 (329)
T ss_pred HHHhhcce--EEEecchhhhhHHHhccCCCeEEE
Confidence 99966655 8877765 6679999999999653
No 158
>PRK14501 putative bifunctional trehalose-6-phosphate synthase/HAD hydrolase subfamily IIB; Provisional
Probab=93.77 E-value=0.3 Score=51.60 Aligned_cols=110 Identities=14% Similarity=0.085 Sum_probs=66.1
Q ss_pred eeeecchhh---hhccccccccccc---cch-hhHHHhhhcCCceeecCcccchhhHHHHHHhhhhcceecCcccchHHH
Q 046167 301 IVKWAPQKE---VLSHVAVGGFWSH---CGW-NSTLESICEGVPMICMPFFEDQKVNARYLSHVWGVGLELEHELERGAV 373 (424)
Q Consensus 301 v~~~ip~~~---ll~~~~~~~~i~h---gG~-~t~~eal~~GvP~v~~P~~~DQ~~na~~~~~~~G~g~~~~~~~~~~~L 373 (424)
+.+++++.+ +++.+++ ++.- -|+ .+..||+++|+|-..+|...+-..-+ .+ +.-|+.+++ .+++++
T Consensus 346 ~~~~~~~~~l~~ly~~aDv--~v~~S~~EG~~lv~~Eama~~~~~~g~~vls~~~G~~---~~-l~~~llv~P-~d~~~l 418 (726)
T PRK14501 346 FYRSLPFEELVALYRAADV--ALVTPLRDGMNLVAKEYVASRTDGDGVLILSEMAGAA---AE-LAEALLVNP-NDIEGI 418 (726)
T ss_pred EeCCCCHHHHHHHHHhccE--EEecccccccCcccceEEEEcCCCCceEEEecccchh---HH-hCcCeEECC-CCHHHH
Confidence 446777765 7777787 6654 254 46699999987621111111111111 12 233677777 789999
Q ss_pred HHHHHHHhcccchHHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHhc
Q 046167 374 EKAVRKLTVDKEGEFLRQRAAQLKEEVELSTRKGGFSYNSLNELLDLINK 423 (424)
Q Consensus 374 ~~ai~~ll~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~a~~~~~~~~~~ 423 (424)
+++|.++|+.+. +..+++.+++.+.++. .+...-++.+++.+++
T Consensus 419 a~ai~~~l~~~~-~e~~~r~~~~~~~v~~-----~~~~~w~~~~l~~l~~ 462 (726)
T PRK14501 419 AAAIKRALEMPE-EEQRERMQAMQERLRR-----YDVHKWASDFLDELRE 462 (726)
T ss_pred HHHHHHHHcCCH-HHHHHHHHHHHHHHHh-----CCHHHHHHHHHHHHHH
Confidence 999999998532 2344555555555432 5677777777766653
No 159
>COG0438 RfaG Glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=92.91 E-value=4.6 Score=37.25 Aligned_cols=79 Identities=23% Similarity=0.330 Sum_probs=53.4
Q ss_pred CCCceeeecchh---hhhccccccccccc---cchh-hHHHhhhcCCceeecCcccchhhHHHHHHhhhhcceecCcccc
Q 046167 297 ENGYIVKWAPQK---EVLSHVAVGGFWSH---CGWN-STLESICEGVPMICMPFFEDQKVNARYLSHVWGVGLELEHELE 369 (424)
Q Consensus 297 ~nv~v~~~ip~~---~ll~~~~~~~~i~h---gG~~-t~~eal~~GvP~v~~P~~~DQ~~na~~~~~~~G~g~~~~~~~~ 369 (424)
+++.+.+++++. .++..+++ ++.- .|.| ++.||+++|+|+|.... ......+... +.|. +....+
T Consensus 257 ~~v~~~g~~~~~~~~~~~~~~~~--~v~ps~~e~~~~~~~Ea~a~g~pvi~~~~----~~~~e~~~~~-~~g~-~~~~~~ 328 (381)
T COG0438 257 DNVKFLGYVPDEELAELLASADV--FVLPSLSEGFGLVLLEAMAAGTPVIASDV----GGIPEVVEDG-ETGL-LVPPGD 328 (381)
T ss_pred CcEEEecccCHHHHHHHHHhCCE--EEeccccccchHHHHHHHhcCCcEEECCC----CChHHHhcCC-CceE-ecCCCC
Confidence 677788998832 36665665 5555 2443 46999999999988633 4444455442 3466 333137
Q ss_pred hHHHHHHHHHHhcc
Q 046167 370 RGAVEKAVRKLTVD 383 (424)
Q Consensus 370 ~~~L~~ai~~ll~~ 383 (424)
.+.+..++..++++
T Consensus 329 ~~~~~~~i~~~~~~ 342 (381)
T COG0438 329 VEELADALEQLLED 342 (381)
T ss_pred HHHHHHHHHHHhcC
Confidence 89999999999998
No 160
>TIGR02398 gluc_glyc_Psyn glucosylglycerol-phosphate synthase. Glucosylglycerol-phosphate synthase catalyzes the key step in the biosynthesis of the osmolyte glucosylglycerol. It is known in several cyanobacteria and in Pseudomonas anguilliseptica. The enzyme is closely related to the alpha,alpha-trehalose-phosphate synthase, likewise involved in osmolyte biosynthesis, of E. coli and many other bacteria. A close homolog from Xanthomonas campestris is excluded from this model and scores between trusted and noise.
Probab=92.77 E-value=1.6 Score=43.47 Aligned_cols=106 Identities=12% Similarity=0.119 Sum_probs=71.8
Q ss_pred ceeeecchhh---hhccccccccccc---cchhhH-HHhhhcCC----ceeecCcccchhhHHHHHHhhhhcceecCccc
Q 046167 300 YIVKWAPQKE---VLSHVAVGGFWSH---CGWNST-LESICEGV----PMICMPFFEDQKVNARYLSHVWGVGLELEHEL 368 (424)
Q Consensus 300 ~v~~~ip~~~---ll~~~~~~~~i~h---gG~~t~-~eal~~Gv----P~v~~P~~~DQ~~na~~~~~~~G~g~~~~~~~ 368 (424)
++.+.+|+.+ +++.++| ++.- -|+|.+ .|+++++. |+|+--+.|= .+. +.-++.+++ .
T Consensus 365 ~~~~~v~~~el~alYr~ADV--~lvT~lrDGmNLVa~Eyva~~~~~~GvLILSefaGa-------a~~-l~~AllVNP-~ 433 (487)
T TIGR02398 365 FFTRSLPYEEVSAWFAMADV--MWITPLRDGLNLVAKEYVAAQGLLDGVLVLSEFAGA-------AVE-LKGALLTNP-Y 433 (487)
T ss_pred EEcCCCCHHHHHHHHHhCCE--EEECccccccCcchhhHHhhhcCCCCCEEEeccccc-------hhh-cCCCEEECC-C
Confidence 4557788765 7777887 4433 588866 69999988 7776533221 144 555788888 8
Q ss_pred chHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHh
Q 046167 369 ERGAVEKAVRKLTVDKEGEFLRQRAAQLKEEVELSTRKGGFSYNSLNELLDLIN 422 (424)
Q Consensus 369 ~~~~L~~ai~~ll~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~a~~~~~~~~~ 422 (424)
+.++++++|.+.|+.+. .+=++|.+++.+.++. .++..=++.+++.+.
T Consensus 434 d~~~~A~ai~~AL~m~~-~Er~~R~~~l~~~v~~-----~d~~~W~~~fl~~l~ 481 (487)
T TIGR02398 434 DPVRMDETIYVALAMPK-AEQQARMREMFDAVNY-----YDVQRWADEFLAAVS 481 (487)
T ss_pred CHHHHHHHHHHHHcCCH-HHHHHHHHHHHHHHhh-----CCHHHHHHHHHHHhh
Confidence 99999999999998854 3345666666666654 355555666666554
No 161
>PRK13932 stationary phase survival protein SurE; Provisional
Probab=92.53 E-value=3.3 Score=37.39 Aligned_cols=112 Identities=12% Similarity=0.076 Sum_probs=59.5
Q ss_pred CceEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCCCCCCCCC----CCCCceEEeCCCC-CCCCccccccHHHHHHH
Q 046167 8 RRRVVLVPSPHQGHINPMLQLGTILHSKGFSITVVHTQFNSPNPS----NHPEFEFQSIPDG-LMDVNISARNLVDSILL 82 (424)
Q Consensus 8 ~~ril~~~~~~~GH~~p~~~la~~L~~~Gh~V~~~~~~~~~~~~~----~~~g~~~~~~~~~-~~~~~~~~~~~~~~~~~ 82 (424)
+||||+.-=.|. |.--+.+|+++|.+.| +|+++++..+..... ....+++..+... -.....-...+.+-
T Consensus 5 ~M~ILltNDDGi-~a~Gi~aL~~~l~~~g-~V~VvAP~~~~Sg~g~ait~~~pl~~~~~~~~~~~~~y~v~GTPaDC--- 79 (257)
T PRK13932 5 KPHILVCNDDGI-EGEGIHVLAASMKKIG-RVTVVAPAEPHSGMSHAMTLGVPLRIKEYQKNNRFFGYTVSGTPVDC--- 79 (257)
T ss_pred CCEEEEECCCCC-CCHHHHHHHHHHHhCC-CEEEEcCCCCCCCCcccccCCCCeEEEEEccCCCceEEEEcCcHHHH---
Confidence 488887654333 2245678999999888 798888764443321 1123444443310 00001111112111
Q ss_pred HHHhchhHHHHHHHHHHhhcCCCCCceEEEecC----------c---cchHHHHHHHhCCceEEEecc
Q 046167 83 LNENCREPFRNWLVQMIKEQQPGDEIVCIIYDE----------V---MYFAEASASQLNVQSIILRTS 137 (424)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~pDlvi~d~----------~---~~~~~~~A~~lgiP~v~~~~~ 137 (424)
+.--+..+... +|||||+.. + ..+++.-|..+|||.+.+|..
T Consensus 80 --------V~lal~~~~~~-----~pDLVvSGIN~G~N~G~dv~ySGTVgAA~Ea~~~GiPsIA~S~~ 134 (257)
T PRK13932 80 --------IKVALSHILPE-----KPDLIVSGINYGSNTATNTLYSGTVAAALEGAIQGIPSLAFSLT 134 (257)
T ss_pred --------HHHHHHhhcCC-----CCCEEEECCcCCCCCCcCEecchhHHHHHHHHHcCCCeEEEEcc
Confidence 11112223222 799999852 2 245556677889999999864
No 162
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=92.34 E-value=0.37 Score=39.72 Aligned_cols=57 Identities=16% Similarity=0.327 Sum_probs=43.4
Q ss_pred CceEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCCCCCCCCCCCCCceEEeCCCC
Q 046167 8 RRRVVLVPSPHQGHINPMLQLGTILHSKGFSITVVHTQFNSPNPSNHPEFEFQSIPDG 65 (424)
Q Consensus 8 ~~ril~~~~~~~GH~~p~~~la~~L~~~Gh~V~~~~~~~~~~~~~~~~g~~~~~~~~~ 65 (424)
.|||++...||.|-..-.+.+++.|.++|+.|-=+-++ ....-.+--||+.+.+..+
T Consensus 5 ~mki~ITG~PGvGKtTl~~ki~e~L~~~g~kvgGf~t~-EVR~gGkR~GF~Ivdl~tg 61 (179)
T COG1618 5 AMKIFITGRPGVGKTTLVLKIAEKLREKGYKVGGFITP-EVREGGKRIGFKIVDLATG 61 (179)
T ss_pred ceEEEEeCCCCccHHHHHHHHHHHHHhcCceeeeEEee-eeecCCeEeeeEEEEccCC
Confidence 48999999999999999999999999999999755442 1212122258888888744
No 163
>TIGR00715 precor6x_red precorrin-6x reductase. This enzyme was found to be a monomer by gel filtration.
Probab=91.79 E-value=1 Score=40.80 Aligned_cols=33 Identities=9% Similarity=0.116 Sum_probs=25.0
Q ss_pred hhhccccccccccc--cchh----hHHHhhhcCCceeec
Q 046167 309 EVLSHVAVGGFWSH--CGWN----STLESICEGVPMICM 341 (424)
Q Consensus 309 ~ll~~~~~~~~i~h--gG~~----t~~eal~~GvP~v~~ 341 (424)
.++++-+++++||- ||.| -+..|...|+|+|++
T Consensus 191 al~~~~~i~~lVtK~SG~~Gg~~eKi~AA~~lgi~vivI 229 (256)
T TIGR00715 191 ALLREYRIDAVVTKASGEQGGELEKVKAAEALGINVIRI 229 (256)
T ss_pred HHHHHcCCCEEEEcCCCCccchHHHHHHHHHcCCcEEEE
Confidence 48888888889986 4443 346678889999987
No 164
>PRK13933 stationary phase survival protein SurE; Provisional
Probab=91.74 E-value=4.6 Score=36.37 Aligned_cols=39 Identities=10% Similarity=0.150 Sum_probs=25.6
Q ss_pred ceEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCCCCCC
Q 046167 9 RRVVLVPSPHQGHINPMLQLGTILHSKGFSITVVHTQFNSP 49 (424)
Q Consensus 9 ~ril~~~~~~~GH~~p~~~la~~L~~~Gh~V~~~~~~~~~~ 49 (424)
||||+.-=.|. |.--+.+|+++|++ +|+|+++++..++.
T Consensus 1 M~ILvtNDDGi-~apGl~aL~~~l~~-~~~V~VvAP~~~~S 39 (253)
T PRK13933 1 MNILLTNDDGI-NAEGINTLAELLSK-YHEVIIVAPENQRS 39 (253)
T ss_pred CeEEEEcCCCC-CChhHHHHHHHHHh-CCcEEEEccCCCCc
Confidence 46666653333 22337788999965 68999998864444
No 165
>TIGR00087 surE 5'/3'-nucleotidase SurE. E. coli SurE is Recommended cutoffs are 15 for homology, 40 for probable orthology, and 200 for orthology with full-length homology.
Probab=91.43 E-value=4.7 Score=36.16 Aligned_cols=110 Identities=15% Similarity=0.132 Sum_probs=57.5
Q ss_pred ceEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCCCCCCCCC----CCCCceEEeCCC--CCCCCccccccHHHHHHH
Q 046167 9 RRVVLVPSPHQGHINPMLQLGTILHSKGFSITVVHTQFNSPNPS----NHPEFEFQSIPD--GLMDVNISARNLVDSILL 82 (424)
Q Consensus 9 ~ril~~~~~~~GH~~p~~~la~~L~~~Gh~V~~~~~~~~~~~~~----~~~g~~~~~~~~--~~~~~~~~~~~~~~~~~~ 82 (424)
||||+.-=.| =|.--+.+|+++|++.| +|+++.+..++.... ....+++..++. +. ....-...+.+-...
T Consensus 1 M~ILltNDDG-i~a~Gi~aL~~~l~~~g-~V~VvAP~~~~Sg~g~ait~~~pl~~~~~~~~~~~-~~~~v~GTPaDcv~~ 77 (244)
T TIGR00087 1 MKILLTNDDG-IHSPGIRALYQALKELG-EVTVVAPARQRSGTGHSLTLFEPLRVGQVKVKNGA-HIYAVDGTPTDCVIL 77 (244)
T ss_pred CeEEEECCCC-CCCHhHHHHHHHHHhCC-CEEEEeCCCCccccccCcCCCCCeEEEEeccCCCc-cEEEEcCcHHHHHHH
Confidence 4666544323 22234678999999998 899998864443322 112344444431 11 000111111111111
Q ss_pred HHHhchhHHHHHHHHHHhhcCCCCCceEEEecC----------cc---chHHHHHHHhCCceEEEecc
Q 046167 83 LNENCREPFRNWLVQMIKEQQPGDEIVCIIYDE----------VM---YFAEASASQLNVQSIILRTS 137 (424)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~pDlvi~d~----------~~---~~~~~~A~~lgiP~v~~~~~ 137 (424)
-+..+... +|||||+.. ++ .++..-|..+|||.+.++..
T Consensus 78 -----------gl~~l~~~-----~pDLVvSGiN~G~N~g~~v~ySGTVgAA~ea~~~GipaiA~S~~ 129 (244)
T TIGR00087 78 -----------GINELMPE-----VPDLVISGINAGENLGTDVTYSGTVGAAMEAAIHGVPAIAISLQ 129 (244)
T ss_pred -----------HHHHhccC-----CCCeEEeccccCCCCCccEecchhHHHHHHHHHcCCCeEEEEec
Confidence 12222221 799999852 22 45556677889999999864
No 166
>TIGR03713 acc_sec_asp1 accessory Sec system protein Asp1. This protein is designated Asp1 because, along with SecY2, SecA2, and other proteins it is part of the accessory secretory protein system. The system is involved in the export of serine-rich glycoproteins important for virulence in a number of Gram-positive species, including Streptococcus gordonii and Staphylococcus aureus. This protein family is assigned to transport rather than glycosylation function, but the specific molecular role is unknown.
Probab=91.22 E-value=0.5 Score=47.57 Aligned_cols=75 Identities=17% Similarity=0.236 Sum_probs=55.5
Q ss_pred CCCceeeecch--h-hhhcccccccccccc---chhhHHHhhhcCCceeecCcccchhhHHHHHHhhhhcceecCcccch
Q 046167 297 ENGYIVKWAPQ--K-EVLSHVAVGGFWSHC---GWNSTLESICEGVPMICMPFFEDQKVNARYLSHVWGVGLELEHELER 370 (424)
Q Consensus 297 ~nv~v~~~ip~--~-~ll~~~~~~~~i~hg---G~~t~~eal~~GvP~v~~P~~~DQ~~na~~~~~~~G~g~~~~~~~~~ 370 (424)
..|.+.++.+. . ..+..+.+ +|.-+ |.++..||+.+|+|+| .......+++. .=|..+ -+.
T Consensus 409 ~~v~f~gy~~e~dl~~~~~~arl--~id~s~~eg~~~~ieAiS~GiPqI-------nyg~~~~V~d~-~NG~li---~d~ 475 (519)
T TIGR03713 409 ERIAFTTLTNEEDLISALDKLRL--IIDLSKEPDLYTQISGISAGIPQI-------NKVETDYVEHN-KNGYII---DDI 475 (519)
T ss_pred cEEEEEecCCHHHHHHHHhhheE--EEECCCCCChHHHHHHHHcCCCee-------ecCCceeeEcC-CCcEEe---CCH
Confidence 46667788773 2 36756555 77765 5679999999999999 34445666663 666666 388
Q ss_pred HHHHHHHHHHhccc
Q 046167 371 GAVEKAVRKLTVDK 384 (424)
Q Consensus 371 ~~L~~ai~~ll~~~ 384 (424)
.+|.++|..+|.+.
T Consensus 476 ~~l~~al~~~L~~~ 489 (519)
T TIGR03713 476 SELLKALDYYLDNL 489 (519)
T ss_pred HHHHHHHHHHHhCH
Confidence 99999999999993
No 167
>PF10649 DUF2478: Protein of unknown function (DUF2478); InterPro: IPR018912 This is a family of hypothetical bacterial proteins encoded in the vicinity of molybdenum ABC transporter gene-products MobA, MobB and MobC. However the function could not be confirmed.
Probab=90.47 E-value=4.2 Score=33.73 Aligned_cols=113 Identities=12% Similarity=0.076 Sum_probs=63.1
Q ss_pred EEcCCCccChHHHH-HHHHHHHhCCCeEEEEeCCCCCCCCCCCCCceEEeCCCCCCCCc---------cccccHHHHHHH
Q 046167 13 LVPSPHQGHINPML-QLGTILHSKGFSITVVHTQFNSPNPSNHPEFEFQSIPDGLMDVN---------ISARNLVDSILL 82 (424)
Q Consensus 13 ~~~~~~~GH~~p~~-~la~~L~~~Gh~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~---------~~~~~~~~~~~~ 82 (424)
.+.+...+.+..++ .+|++|+.+|++|.=+...................++.+-...- ...-++......
T Consensus 3 av~~~~~~~~d~lL~~~a~~L~~~G~rv~G~vQ~~~~~~~~~~~~m~l~dl~~G~~~~IsQ~LG~gs~gCrLD~~~La~A 82 (159)
T PF10649_consen 3 AVVYDDGGDIDALLAAFAARLRARGVRVAGLVQRNTADGDGGRCDMDLRDLPSGRRIRISQDLGPGSRGCRLDPGALAEA 82 (159)
T ss_pred EEEcCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccCCCCCCccceEEEECCCCCEEEEeeccCCCCcccccCHHHHHHH
Confidence 34455667777766 48999999999998887643222222224566666664422111 111222221111
Q ss_pred HHHhchhHHHHHHHHHHhhcCCCCCceEEEecCcc---------chHHHHHHHhCCceEEEecchH
Q 046167 83 LNENCREPFRNWLVQMIKEQQPGDEIVCIIYDEVM---------YFAEASASQLNVQSIILRTSGA 139 (424)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~pDlvi~d~~~---------~~~~~~A~~lgiP~v~~~~~~~ 139 (424)
- ..++...+. +|||+|..-|. -.....|-..|||+++..+...
T Consensus 83 ~---------~~l~~al~~-----~~DLlivNkFGk~Ea~G~Glr~~i~~A~~~giPVLt~V~~~~ 134 (159)
T PF10649_consen 83 S---------AALRRALAE-----GADLLIVNKFGKQEAEGRGLRDEIAAALAAGIPVLTAVPPRN 134 (159)
T ss_pred H---------HHHHHHHhc-----CCCEEEEcccHHhhhcCCCHHHHHHHHHHCCCCEEEEECHHH
Confidence 1 122333222 79999998654 1222445667999998766543
No 168
>COG0496 SurE Predicted acid phosphatase [General function prediction only]
Probab=90.38 E-value=1.1 Score=40.04 Aligned_cols=110 Identities=17% Similarity=0.171 Sum_probs=57.9
Q ss_pred ceEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCCCCCCCCCC----CCCceEEeCCCCCCCCccccccHHHHHHHHH
Q 046167 9 RRVVLVPSPHQGHINPMLQLGTILHSKGFSITVVHTQFNSPNPSN----HPEFEFQSIPDGLMDVNISARNLVDSILLLN 84 (424)
Q Consensus 9 ~ril~~~~~~~GH~~p~~~la~~L~~~Gh~V~~~~~~~~~~~~~~----~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (424)
||||+.-= -+=|.--..+|+++|. .+++|+++++..++..... ...++...+.. ....-...+.+
T Consensus 1 mrILlTND-DGi~a~Gi~aL~~al~-~~~dV~VVAP~~~qSg~s~slTl~~Plr~~~~~~---~~~av~GTPaD------ 69 (252)
T COG0496 1 MRILLTND-DGIHAPGIRALARALR-EGADVTVVAPDREQSGASHSLTLHEPLRVRQVDN---GAYAVNGTPAD------ 69 (252)
T ss_pred CeEEEecC-CccCCHHHHHHHHHHh-hCCCEEEEccCCCCcccccccccccCceeeEecc---ceEEecCChHH------
Confidence 45655432 2234444667899998 9999999999755544221 11222222221 00000011111
Q ss_pred HhchhHHHHHHHHHHhhcCCCCCceEEEecC-------------ccchHHHHHHHhCCceEEEecch
Q 046167 85 ENCREPFRNWLVQMIKEQQPGDEIVCIIYDE-------------VMYFAEASASQLNVQSIILRTSG 138 (424)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~pDlvi~d~-------------~~~~~~~~A~~lgiP~v~~~~~~ 138 (424)
.+.--+..+.+.. +||+||+.. ...++++=|..+|||.|.+|...
T Consensus 70 -----CV~lal~~l~~~~----~pDLVvSGIN~G~Nlg~dv~ySGTVaaA~Ea~~~GipsIA~S~~~ 127 (252)
T COG0496 70 -----CVILGLNELLKEP----RPDLVVSGINAGANLGDDVIYSGTVAAAMEAALLGIPAIAISLAY 127 (252)
T ss_pred -----HHHHHHHHhccCC----CCCEEEeCccCCCccccceeeeehHHHHHHHHHcCccceeeeehh
Confidence 1111233333210 599999852 22455566778999999998764
No 169
>PRK13982 bifunctional SbtC-like/phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Provisional
Probab=89.76 E-value=1.2 Score=43.94 Aligned_cols=53 Identities=15% Similarity=0.344 Sum_probs=40.5
Q ss_pred CceEEEEcCCCccChHHHH------------HHHHHHHhCCCeEEEEeCCCCCCCCCCCCCceEEeCC
Q 046167 8 RRRVVLVPSPHQGHINPML------------QLGTILHSKGFSITVVHTQFNSPNPSNHPEFEFQSIP 63 (424)
Q Consensus 8 ~~ril~~~~~~~GH~~p~~------------~la~~L~~~Gh~V~~~~~~~~~~~~~~~~g~~~~~~~ 63 (424)
.+|||+.++|+.-.+.|.. +||+++..+|++||+++++.... ...+++++.+.
T Consensus 256 gkkvLITaGpT~E~IDpVR~ItN~SSGkmG~alA~aa~~~GA~VtlI~Gp~~~~---~p~~v~~i~V~ 320 (475)
T PRK13982 256 GRRVLITAGPTHEPIDPVRYIANRSSGKQGFAIAAAAAAAGAEVTLISGPVDLA---DPQGVKVIHVE 320 (475)
T ss_pred CCEEEEecCCccccCCcceeeCCCCchHHHHHHHHHHHHCCCcEEEEeCCcCCC---CCCCceEEEec
Confidence 4799999999999998864 89999999999999999864322 11456655543
No 170
>PRK13935 stationary phase survival protein SurE; Provisional
Probab=89.44 E-value=9.4 Score=34.40 Aligned_cols=40 Identities=10% Similarity=0.100 Sum_probs=26.4
Q ss_pred ceEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCCCCCCC
Q 046167 9 RRVVLVPSPHQGHINPMLQLGTILHSKGFSITVVHTQFNSPN 50 (424)
Q Consensus 9 ~ril~~~~~~~GH~~p~~~la~~L~~~Gh~V~~~~~~~~~~~ 50 (424)
||||+.-=.|. |.--..+|+++|++ +|+|+++++..++..
T Consensus 1 M~ILlTNDDGi-~a~Gi~aL~~~l~~-~~~V~VvAP~~~qSg 40 (253)
T PRK13935 1 MNILVTNDDGI-TSPGIIILAEYLSE-KHEVFVVAPDKERSA 40 (253)
T ss_pred CeEEEECCCCC-CCHHHHHHHHHHHh-CCcEEEEccCCCCcc
Confidence 46766654444 33446778999965 689999988654443
No 171
>PF04127 DFP: DNA / pantothenate metabolism flavoprotein; InterPro: IPR007085 This entry represents the C-terminal domain found in DNA/pantothenate metabolism flavoproteins, which affects synthesis of DNA and pantothenate metabolism. These proteins contain ATP, phosphopantothenate, and cysteine binding sites. The structure of this domain has been determined in human phosphopantothenoylcysteine (PPC) synthetase [] and as the PPC synthase domain (CoaB) from the Escherichia coli coenzyme A bifunctional protein CoaBC []. This domain adopts a 3-layer alpha/beta/alpha fold with mixed beta-sheets, which topologically resembles a combination of Rossmann-like and ribokinase-like folds. The structure of these proteins predicts a ping pong mechanism with initial formation of an acyladenylate intermediate, followed by release of pyrophosphate and attack by cysteine to form the final products PPC and AMP. ; PDB: 1U7W_A 1U7U_A 1U80_C 1U7Z_A 1P9O_B 2GK4_A.
Probab=89.02 E-value=0.87 Score=38.99 Aligned_cols=52 Identities=19% Similarity=0.432 Sum_probs=33.9
Q ss_pred ceEEEEcCCCccChHHH------------HHHHHHHHhCCCeEEEEeCCCCCCCCCCCCCceEEeCC
Q 046167 9 RRVVLVPSPHQGHINPM------------LQLGTILHSKGFSITVVHTQFNSPNPSNHPEFEFQSIP 63 (424)
Q Consensus 9 ~ril~~~~~~~GH~~p~------------~~la~~L~~~Gh~V~~~~~~~~~~~~~~~~g~~~~~~~ 63 (424)
+|||+.++|+.-.+.|. .+||+++.++||+|+++.++..... ..+++.+.+.
T Consensus 4 k~vlITaG~T~E~iD~VR~ItN~SSG~~G~~lA~~~~~~Ga~V~li~g~~~~~~---p~~~~~i~v~ 67 (185)
T PF04127_consen 4 KKVLITAGPTREPIDPVRFITNRSSGKMGAALAEEAARRGAEVTLIHGPSSLPP---PPGVKVIRVE 67 (185)
T ss_dssp -EEEEEESB-EEESSSSEEEEES--SHHHHHHHHHHHHTT-EEEEEE-TTS-------TTEEEEE-S
T ss_pred CEEEEECCCccccCCCceEecCCCcCHHHHHHHHHHHHCCCEEEEEecCccccc---cccceEEEec
Confidence 58888888888887764 4899999999999999999632111 1356666544
No 172
>PRK00346 surE 5'(3')-nucleotidase/polyphosphatase; Provisional
Probab=88.87 E-value=10 Score=34.16 Aligned_cols=108 Identities=14% Similarity=0.150 Sum_probs=57.3
Q ss_pred ceEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCCCCCCCCCC----CCCceEEeCCCCCCCCccccccHHHHHHHHH
Q 046167 9 RRVVLVPSPHQGHINPMLQLGTILHSKGFSITVVHTQFNSPNPSN----HPEFEFQSIPDGLMDVNISARNLVDSILLLN 84 (424)
Q Consensus 9 ~ril~~~~~~~GH~~p~~~la~~L~~~Gh~V~~~~~~~~~~~~~~----~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (424)
||||+.-=.|. |.--+.+|+++|++. |+|+++.+...+..... ...+++..+.++ ...-...+.+
T Consensus 1 M~ILlTNDDGi-~a~Gi~aL~~~l~~~-~~V~VvAP~~~qSg~g~ait~~~pl~~~~~~~~---~~~v~GTPaD------ 69 (250)
T PRK00346 1 MRILLTNDDGI-HAPGIRALAEALREL-ADVTVVAPDRERSGASHSLTLTRPLRVEKVDNG---FYAVDGTPTD------ 69 (250)
T ss_pred CeEEEECCCCC-CChhHHHHHHHHHhC-CCEEEEeCCCCCcCCcccccCCCCeEEEEecCC---eEEECCcHHH------
Confidence 46666554333 334477899999998 79999988644443221 122333333210 0000111111
Q ss_pred HhchhHHHHHHHHHHhhcCCCCCceEEEecC----------cc---chHHHHHHHhCCceEEEecc
Q 046167 85 ENCREPFRNWLVQMIKEQQPGDEIVCIIYDE----------VM---YFAEASASQLNVQSIILRTS 137 (424)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~pDlvi~d~----------~~---~~~~~~A~~lgiP~v~~~~~ 137 (424)
.+.--+..+... +||+||+.. ++ .+++.-|..+|||.+.++..
T Consensus 70 -----cV~~gl~~l~~~-----~pDlVvSGIN~G~N~g~~v~ySGTVgAA~ea~~~GiPaiA~S~~ 125 (250)
T PRK00346 70 -----CVHLALNGLLDP-----KPDLVVSGINHGANLGDDVLYSGTVAAAMEGALLGIPAIAVSLA 125 (250)
T ss_pred -----HHHHHHHhhccC-----CCCEEEeCCccCCCCCCCeeccHHHHHHHHHHhcCCCeEEEecc
Confidence 111122223221 799999852 22 45556677889999999864
No 173
>KOG1387 consensus Glycosyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=88.56 E-value=22 Score=33.43 Aligned_cols=271 Identities=15% Similarity=0.075 Sum_probs=126.1
Q ss_pred CceEEEecCccchH-HHHHHHhCCceEEEecchHHHHHHHHhhhcccccCCC-CCChhHHHHHHH-hhhccC-CceEEec
Q 046167 107 EIVCIIYDEVMYFA-EASASQLNVQSIILRTSGAVTVVARLVLFQLKEEGYN-PLKESYVQLINN-AYSART-SSAVISN 182 (424)
Q Consensus 107 ~pDlvi~d~~~~~~-~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~~~-p~~~~~~~~~~~-~~~~~~-~~~~~~~ 182 (424)
.||+.|-.+.++.. +..++..++|++++.+.|....-....+......++. =....+++.+.. .+..-. ++.+..|
T Consensus 150 ~Pdi~IDtMGY~fs~p~~r~l~~~~V~aYvHYP~iS~DML~~l~qrq~s~~l~~~KlaY~rlFa~lY~~~G~~ad~vm~N 229 (465)
T KOG1387|consen 150 PPDIFIDTMGYPFSYPIFRRLRRIPVVAYVHYPTISTDMLKKLFQRQKSGILVWGKLAYWRLFALLYQSAGSKADIVMTN 229 (465)
T ss_pred CchheEecCCCcchhHHHHHHccCceEEEEecccccHHHHHHHHhhhhcchhhhHHHHHHHHHHHHHHhccccceEEEec
Confidence 79999977766444 4556677999999888776544332221111111111 111234677777 444333 4556666
Q ss_pred ChhhhhHHHHHHHHhccCCCeeee-cccccCCCCCCCCCcccccccccccccCCCCeEEEEEeCCcccCCH-HHHHHHHH
Q 046167 183 TIYCLEESVLSQLQQYFKVPNFPI-GPLHKFAPSSNGSLLKEDTSCISWLNNQSPKSVIYVSLGSVASMDK-KELEEMAW 260 (424)
Q Consensus 183 ~~~~l~~~~~~~~~~~~~~~~~~v-Gp~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~I~vs~Gs~~~~~~-~~~~~~~~ 260 (424)
+-+--. ...+.+.. . ....| .||-.. .+.+-......+-...+++|.+-.... +.++..+-
T Consensus 230 ssWT~n-HI~qiW~~-~--~~~iVyPPC~~e-------------~lks~~~te~~r~~~ll~l~Q~RPEKnH~~Lql~Al 292 (465)
T KOG1387|consen 230 SSWTNN-HIKQIWQS-N--TCSIVYPPCSTE-------------DLKSKFGTEGERENQLLSLAQFRPEKNHKILQLFAL 292 (465)
T ss_pred chhhHH-HHHHHhhc-c--ceeEEcCCCCHH-------------HHHHHhcccCCcceEEEEEeecCcccccHHHHHHHH
Confidence 644211 11222222 1 12222 233221 122222222345567777776654221 22333333
Q ss_pred HHHhCC-------CCeEEEEcCCCCCCC-cccccCchhHHH-HhcCCCceeeecchhh---hhcccccccccc-----cc
Q 046167 261 GLVNSK-------QPFLWVIRPRTNNAP-EGIELLPKVLAE-DVQENGYIVKWAPQKE---VLSHVAVGGFWS-----HC 323 (424)
Q Consensus 261 a~~~~~-------~~~i~~~~~~~~~~~-~~~~~l~~~~~~-~~~~nv~v~~~ip~~~---ll~~~~~~~~i~-----hg 323 (424)
-+.+.+ ...+ .+++..+... +....|.+...+ +++.+|.+..-+|+.+ +|..+.+ -|| |=
T Consensus 293 ~~~~~pl~a~~~~iKL~-ivGScRneeD~ervk~Lkd~a~~L~i~~~v~F~~N~Py~~lv~lL~~a~i--Gvh~MwNEHF 369 (465)
T KOG1387|consen 293 YLKNEPLEASVSPIKLI-IVGSCRNEEDEERVKSLKDLAEELKIPKHVQFEKNVPYEKLVELLGKATI--GVHTMWNEHF 369 (465)
T ss_pred HHhcCchhhccCCceEE-EEeccCChhhHHHHHHHHHHHHhcCCccceEEEecCCHHHHHHHhcccee--ehhhhhhhhc
Confidence 333322 2333 3333322221 111122222111 4668888888899887 5545444 222 11
Q ss_pred chhhHHHhhhcCCceeecCcccchhhHHHHHHhhhhcceecCc-ccchHHHHHHHHHHhcccc--hHHHHHHHHHHHHHH
Q 046167 324 GWNSTLESICEGVPMICMPFFEDQKVNARYLSHVWGVGLELEH-ELERGAVEKAVRKLTVDKE--GEFLRQRAAQLKEEV 400 (424)
Q Consensus 324 G~~t~~eal~~GvP~v~~P~~~DQ~~na~~~~~~~G~g~~~~~-~~~~~~L~~ai~~ll~~~~--~~~~~~~a~~l~~~~ 400 (424)
|. ++.|++++|.=.|+--..|-..+. -..+ .|....- ..|.++-+++|.+++.... +..+|++|++-.++|
T Consensus 370 GI-sVVEyMAAGlIpi~h~SgGP~lDI--V~~~---~G~~tGFla~t~~EYaE~iLkIv~~~~~~r~~~r~~AR~s~~RF 443 (465)
T KOG1387|consen 370 GI-SVVEYMAAGLIPIVHNSGGPLLDI--VTPW---DGETTGFLAPTDEEYAEAILKIVKLNYDERNMMRRNARKSLARF 443 (465)
T ss_pred ch-hHHHHHhcCceEEEeCCCCCceee--eecc---CCccceeecCChHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHh
Confidence 22 678999999755442111111000 0000 0111111 2577788888888875432 345677776666666
Q ss_pred HHH
Q 046167 401 ELS 403 (424)
Q Consensus 401 ~~~ 403 (424)
-+.
T Consensus 444 sE~ 446 (465)
T KOG1387|consen 444 GEL 446 (465)
T ss_pred hHH
Confidence 543
No 174
>PF01075 Glyco_transf_9: Glycosyltransferase family 9 (heptosyltransferase); InterPro: IPR002201 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 9 GT9 from CAZY comprises enzymes with two known activity; lipopolysaccharide N-acetylglucosaminyltransferase (2.4.1.56 from EC), heptosyltransferase (2.4 from EC). Heptosyltransferase I is thought to add L-glycero-D-manno-heptose to the inner 3-deoxy-D-manno-octulosonic acid (Kdo) residue of the lipopolysaccharide core []. Heptosyltransferase II is a glycosyltransferase involved in the synthesis of the inner core region of lipopolysaccharide []. Lipopolysaccharide is a major component of the outer leaflet of the outer membrane in Gram-negative bacteria. It is composed of three domains; lipid A, Core oligosaccharide and the O-antigen. These enzymes transfer heptose to the lipopolysaccharide core [].; GO: 0016757 transferase activity, transferring glycosyl groups, 0008152 metabolic process; PDB: 1PSW_A 2H1F_A 2GT1_A 3TOV_A 2H1H_A.
Probab=87.76 E-value=3.7 Score=36.79 Aligned_cols=95 Identities=13% Similarity=0.141 Sum_probs=51.5
Q ss_pred CCCeEEEEEeCCccc---CCHHHHHHHHHHHHhCCCCeEEEEcCCCCCCCcccccCchhHHHHhcC----CCc-eeeec-
Q 046167 235 SPKSVIYVSLGSVAS---MDKKELEEMAWGLVNSKQPFLWVIRPRTNNAPEGIELLPKVLAEDVQE----NGY-IVKWA- 305 (424)
Q Consensus 235 ~~~~~I~vs~Gs~~~---~~~~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~----nv~-v~~~i- 305 (424)
.+++.|.+..|+... .+.+.+..+++.+.+.++++++..... +. .....+.... ++. +.+-.
T Consensus 103 ~~~~~i~i~~~a~~~~k~wp~e~~~~l~~~l~~~~~~vvl~g~~~--------~~-~~~~~~~~~~~~~~~~~~~~~~~~ 173 (247)
T PF01075_consen 103 KDKPYIGINPGASWPSKRWPAEKWAELIERLKERGYRVVLLGGPE--------EQ-EKEIADQIAAGLQNPVINLAGKTS 173 (247)
T ss_dssp TTSSEEEEE---SSGGGS--HHHHHHHHHHHCCCT-EEEE--SSH--------HH-HHHHHHHHHTTHTTTTEEETTTS-
T ss_pred ccCCeEEEeecCCCccccCCHHHHHHHHHHHHhhCceEEEEccch--------HH-HHHHHHHHHHhcccceEeecCCCC
Confidence 356688888888665 678999999999988776665444211 00 1111122222 222 22222
Q ss_pred -ch-hhhhccccccccccccchhhHHHhhhcCCceeec
Q 046167 306 -PQ-KEVLSHVAVGGFWSHCGWNSTLESICEGVPMICM 341 (424)
Q Consensus 306 -p~-~~ll~~~~~~~~i~hgG~~t~~eal~~GvP~v~~ 341 (424)
.+ ..+++++++ +|+. -.|.++=|.+.|+|+|.+
T Consensus 174 l~e~~ali~~a~~--~I~~-Dtg~~HlA~a~~~p~v~l 208 (247)
T PF01075_consen 174 LRELAALISRADL--VIGN-DTGPMHLAAALGTPTVAL 208 (247)
T ss_dssp HHHHHHHHHTSSE--EEEE-SSHHHHHHHHTT--EEEE
T ss_pred HHHHHHHHhcCCE--EEec-CChHHHHHHHHhCCEEEE
Confidence 22 347877775 7764 567889999999999987
No 175
>PRK13934 stationary phase survival protein SurE; Provisional
Probab=87.70 E-value=15 Score=33.36 Aligned_cols=40 Identities=13% Similarity=0.169 Sum_probs=27.2
Q ss_pred ceEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCCCCCCC
Q 046167 9 RRVVLVPSPHQGHINPMLQLGTILHSKGFSITVVHTQFNSPN 50 (424)
Q Consensus 9 ~ril~~~~~~~GH~~p~~~la~~L~~~Gh~V~~~~~~~~~~~ 50 (424)
||||+.-=.|. |.--+.+|+++|.+.| +|+++.+..++..
T Consensus 1 M~ILlTNDDGi-~apGi~aL~~al~~~g-~V~VvAP~~eqSg 40 (266)
T PRK13934 1 MKILVTNDDGV-HSPGLRLLYEFVSPLG-EVDVVAPETPKSA 40 (266)
T ss_pred CeEEEEcCCCC-CCHHHHHHHHHHHhCC-cEEEEccCCCCcc
Confidence 46666554343 3455778999998888 7998887654433
No 176
>PF02374 ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_A 3IBG_B 3SJA_A 3H84_B 3SJD_A 3ZS9_A 3A37_A 2WOJ_A 3SJC_B 3A36_B ....
Probab=87.49 E-value=1.2 Score=41.60 Aligned_cols=40 Identities=18% Similarity=0.174 Sum_probs=31.9
Q ss_pred ceEEEEc-CCCccChHHHHHHHHHHHhCCCeEEEEeCCCCC
Q 046167 9 RRVVLVP-SPHQGHINPMLQLGTILHSKGFSITVVHTQFNS 48 (424)
Q Consensus 9 ~ril~~~-~~~~GH~~p~~~la~~L~~~Gh~V~~~~~~~~~ 48 (424)
||++|+. -||-|-..-..++|-.++++|++|.+++.++.+
T Consensus 1 ~r~~~~~GKGGVGKTT~aaA~A~~~A~~G~rtLlvS~Dpa~ 41 (305)
T PF02374_consen 1 MRILFFGGKGGVGKTTVAAALALALARRGKRTLLVSTDPAH 41 (305)
T ss_dssp -SEEEEEESTTSSHHHHHHHHHHHHHHTTS-EEEEESSTTT
T ss_pred CeEEEEecCCCCCcHHHHHHHHHHHhhCCCCeeEeecCCCc
Confidence 3555555 567799999999999999999999999998655
No 177
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=87.38 E-value=7.3 Score=36.55 Aligned_cols=42 Identities=17% Similarity=0.149 Sum_probs=33.3
Q ss_pred ceEEEEc-CCCccChHHHHHHHHHHHhCCCeEEEEeCCCCCCC
Q 046167 9 RRVVLVP-SPHQGHINPMLQLGTILHSKGFSITVVHTQFNSPN 50 (424)
Q Consensus 9 ~ril~~~-~~~~GH~~p~~~la~~L~~~Gh~V~~~~~~~~~~~ 50 (424)
+||+|++ -||-|-..-..++|-.|++.|.+|.++++++.+..
T Consensus 2 ~riv~f~GKGGVGKTT~aaA~A~~lA~~g~kvLlvStDPAhsL 44 (322)
T COG0003 2 TRIVFFTGKGGVGKTTIAAATAVKLAESGKKVLLVSTDPAHSL 44 (322)
T ss_pred cEEEEEecCCcccHHHHHHHHHHHHHHcCCcEEEEEeCCCCch
Confidence 3666666 45669999999999999999999999988765543
No 178
>TIGR02919 accessory Sec system glycosyltransferase GtfB. Members of this protein family are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus.
Probab=86.86 E-value=1.4 Score=43.36 Aligned_cols=89 Identities=13% Similarity=0.109 Sum_probs=61.2
Q ss_pred CCCcee-eecc-h-hhhhccccccccccccc--hhhHHHhhhcCCceeecCcccchhhHHHHHHhhhhcceecCcccchH
Q 046167 297 ENGYIV-KWAP-Q-KEVLSHVAVGGFWSHCG--WNSTLESICEGVPMICMPFFEDQKVNARYLSHVWGVGLELEHELERG 371 (424)
Q Consensus 297 ~nv~v~-~~ip-~-~~ll~~~~~~~~i~hgG--~~t~~eal~~GvP~v~~P~~~DQ~~na~~~~~~~G~g~~~~~~~~~~ 371 (424)
+|+.+. ++.+ . ..++..|++=+-|+||. ..++.||+.+|+|++..=.. ..+...+.. |-.++. -+.+
T Consensus 328 ~nvvly~~~~~~~l~~ly~~~dlyLdin~~e~~~~al~eA~~~G~pI~afd~t---~~~~~~i~~----g~l~~~-~~~~ 399 (438)
T TIGR02919 328 DNVKLYPNITTQKIQELYQTCDIYLDINHGNEILNAVRRAFEYNLLILGFEET---AHNRDFIAS----ENIFEH-NEVD 399 (438)
T ss_pred CCcEEECCcChHHHHHHHHhccEEEEccccccHHHHHHHHHHcCCcEEEEecc---cCCcccccC----CceecC-CCHH
Confidence 677766 7677 3 35999999988899977 57999999999999987321 111111111 323333 5789
Q ss_pred HHHHHHHHHhcccchHHHHHHHHH
Q 046167 372 AVEKAVRKLTVDKEGEFLRQRAAQ 395 (424)
Q Consensus 372 ~L~~ai~~ll~~~~~~~~~~~a~~ 395 (424)
++.++|.++|+++ +.++++..+
T Consensus 400 ~m~~~i~~lL~d~--~~~~~~~~~ 421 (438)
T TIGR02919 400 QLISKLKDLLNDP--NQFRELLEQ 421 (438)
T ss_pred HHHHHHHHHhcCH--HHHHHHHHH
Confidence 9999999999994 345555544
No 179
>PF02951 GSH-S_N: Prokaryotic glutathione synthetase, N-terminal domain; InterPro: IPR004215 Prokaryotic glutathione synthetase 6.3.2.3 from EC (glutathione synthase) catalyses the conversion of gamma-L-glutamyl-L-cysteine and glycine to orthophosphate and glutathione in the presence of ATP. This is the second step in glutathione biosynthesis. The enzyme is inhibited by 7,8-dihydrofolate, methotrexate and trimethoprim. This domain is the N terminus of the enzyme.; GO: 0004363 glutathione synthase activity, 0006750 glutathione biosynthetic process; PDB: 1GLV_A 1GSA_A 1GSH_A 2GLT_A.
Probab=86.81 E-value=1.2 Score=35.08 Aligned_cols=37 Identities=11% Similarity=0.167 Sum_probs=26.0
Q ss_pred ceEEEEcCCCcc---ChHHHHHHHHHHHhCCCeEEEEeCC
Q 046167 9 RRVVLVPSPHQG---HINPMLQLGTILHSKGFSITVVHTQ 45 (424)
Q Consensus 9 ~ril~~~~~~~G---H~~p~~~la~~L~~~Gh~V~~~~~~ 45 (424)
|||+|+.-|-.+ .-...++|+.+-++|||+|.+++..
T Consensus 1 Mki~fvmDpi~~i~~~kDTT~alm~eAq~RGhev~~~~~~ 40 (119)
T PF02951_consen 1 MKIAFVMDPIESIKPYKDTTFALMLEAQRRGHEVFYYEPG 40 (119)
T ss_dssp -EEEEEES-GGG--TTT-HHHHHHHHHHHTT-EEEEE-GG
T ss_pred CeEEEEeCCHHHCCCCCChHHHHHHHHHHCCCEEEEEEcC
Confidence 578888776443 3357889999999999999999875
No 180
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=86.45 E-value=4.8 Score=31.42 Aligned_cols=36 Identities=28% Similarity=0.390 Sum_probs=32.6
Q ss_pred ceEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeC
Q 046167 9 RRVVLVPSPHQGHINPMLQLGTILHSKGFSITVVHT 44 (424)
Q Consensus 9 ~ril~~~~~~~GH~~p~~~la~~L~~~Gh~V~~~~~ 44 (424)
.|+++.+.+..-|-.-...+|..|+++||+|.++-.
T Consensus 1 ~~v~~~~~~~~~~~lGl~~la~~l~~~G~~v~~~d~ 36 (121)
T PF02310_consen 1 IRVVLACVPGEVHPLGLLYLAAYLRKAGHEVDILDA 36 (121)
T ss_dssp -EEEEEEBTTSSTSHHHHHHHHHHHHTTBEEEEEES
T ss_pred CEEEEEeeCCcchhHHHHHHHHHHHHCCCeEEEECC
Confidence 378999999999999999999999999999998855
No 181
>COG2894 MinD Septum formation inhibitor-activating ATPase [Cell division and chromosome partitioning]
Probab=84.68 E-value=8.1 Score=33.81 Aligned_cols=41 Identities=22% Similarity=0.368 Sum_probs=32.9
Q ss_pred eEEEEcCC--CccChHHHHHHHHHHHhCCCeEEEEeCCCCCCC
Q 046167 10 RVVLVPSP--HQGHINPMLQLGTILHSKGFSITVVHTQFNSPN 50 (424)
Q Consensus 10 ril~~~~~--~~GH~~p~~~la~~L~~~Gh~V~~~~~~~~~~~ 50 (424)
++.++++| |-|-..-..+|+.+|+++|+.|.++-.+.....
T Consensus 3 ~iIVvTSGKGGVGKTTttAnig~aLA~~GkKv~liD~DiGLRN 45 (272)
T COG2894 3 RIIVVTSGKGGVGKTTTTANIGTALAQLGKKVVLIDFDIGLRN 45 (272)
T ss_pred eEEEEecCCCCcCccchhHHHHHHHHHcCCeEEEEecCcCchh
Confidence 55555554 569999999999999999999999988755444
No 182
>PF09314 DUF1972: Domain of unknown function (DUF1972); InterPro: IPR015393 This domain is functionally uncharacterised and found in bacterial glycosyltransferases and rhamnosyltransferases.
Probab=84.49 E-value=25 Score=30.08 Aligned_cols=54 Identities=22% Similarity=0.336 Sum_probs=38.0
Q ss_pred eEEEEc---CC-CccChHHHH-HHHHHHHhCCCeEEEEeCCCCCCC-CCCCCCceEEeCC
Q 046167 10 RVVLVP---SP-HQGHINPML-QLGTILHSKGFSITVVHTQFNSPN-PSNHPEFEFQSIP 63 (424)
Q Consensus 10 ril~~~---~~-~~GH~~p~~-~la~~L~~~Gh~V~~~~~~~~~~~-~~~~~g~~~~~~~ 63 (424)
||.++. .| -+|=+--++ .|+..|+++||+|+++|....... .....|++.+.+|
T Consensus 3 kIaIiGtrGIPa~YGGfET~ve~L~~~l~~~g~~v~Vyc~~~~~~~~~~~y~gv~l~~i~ 62 (185)
T PF09314_consen 3 KIAIIGTRGIPARYGGFETFVEELAPRLVSKGIDVTVYCRSDYYPYKEFEYNGVRLVYIP 62 (185)
T ss_pred eEEEEeCCCCCcccCcHHHHHHHHHHHHhcCCceEEEEEccCCCCCCCcccCCeEEEEeC
Confidence 565554 33 356666655 489999999999999998744433 3445788888887
No 183
>cd03793 GT1_Glycogen_synthase_GSY2_like Glycogen synthase, which is most closely related to the GT1 family of glycosyltransferases, catalyzes the transfer of a glucose molecule from UDP-glucose to a terminal branch of a glycogen molecule, a rate-limit step of glycogen biosynthesis. GSY2, the member of this family in S. cerevisiae, has been shown to possess glycogen synthase activity.
Probab=84.40 E-value=2.4 Score=42.77 Aligned_cols=75 Identities=9% Similarity=0.029 Sum_probs=46.0
Q ss_pred chhhhhcccccccccc---ccch-hhHHHhhhcCCceeecCcccc-hhhHHHHHHhhhhcceecCc------ccchHHHH
Q 046167 306 PQKEVLSHVAVGGFWS---HCGW-NSTLESICEGVPMICMPFFED-QKVNARYLSHVWGVGLELEH------ELERGAVE 374 (424)
Q Consensus 306 p~~~ll~~~~~~~~i~---hgG~-~t~~eal~~GvP~v~~P~~~D-Q~~na~~~~~~~G~g~~~~~------~~~~~~L~ 374 (424)
++.++++.|++ +|. +=|+ -+..||+++|+|+|+....+= ... -..+...-..|+.+.. ..+.++|.
T Consensus 467 ~y~E~~~g~dl--~v~PS~yE~fG~~~lEAma~G~PvI~t~~~gf~~~v-~E~v~~~~~~gi~V~~r~~~~~~e~v~~La 543 (590)
T cd03793 467 DYEEFVRGCHL--GVFPSYYEPWGYTPAECTVMGIPSITTNLSGFGCFM-EEHIEDPESYGIYIVDRRFKSPDESVQQLT 543 (590)
T ss_pred chHHHhhhceE--EEeccccCCCCcHHHHHHHcCCCEEEccCcchhhhh-HHHhccCCCceEEEecCCccchHHHHHHHH
Confidence 45667877777 554 3344 478999999999999865321 111 1111110014555542 35778889
Q ss_pred HHHHHHhcc
Q 046167 375 KAVRKLTVD 383 (424)
Q Consensus 375 ~ai~~ll~~ 383 (424)
+++.++++.
T Consensus 544 ~~m~~~~~~ 552 (590)
T cd03793 544 QYMYEFCQL 552 (590)
T ss_pred HHHHHHhCC
Confidence 999998865
No 184
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=83.86 E-value=1.7 Score=34.10 Aligned_cols=36 Identities=19% Similarity=0.263 Sum_probs=32.9
Q ss_pred eEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCC
Q 046167 10 RVVLVPSPHQGHINPMLQLGTILHSKGFSITVVHTQ 45 (424)
Q Consensus 10 ril~~~~~~~GH~~p~~~la~~L~~~Gh~V~~~~~~ 45 (424)
|+++.+.++..|.....-++..|.+.|++|.++...
T Consensus 1 ~vl~~~~~~e~H~lG~~~~~~~l~~~G~~V~~lg~~ 36 (119)
T cd02067 1 KVVIATVGGDGHDIGKNIVARALRDAGFEVIDLGVD 36 (119)
T ss_pred CEEEEeeCCchhhHHHHHHHHHHHHCCCEEEECCCC
Confidence 588999999999999999999999999999888754
No 185
>PRK09620 hypothetical protein; Provisional
Probab=83.29 E-value=2.7 Score=37.39 Aligned_cols=37 Identities=16% Similarity=0.231 Sum_probs=30.5
Q ss_pred ceEEEEcCCCccChHHH------------HHHHHHHHhCCCeEEEEeCC
Q 046167 9 RRVVLVPSPHQGHINPM------------LQLGTILHSKGFSITVVHTQ 45 (424)
Q Consensus 9 ~ril~~~~~~~GH~~p~------------~~la~~L~~~Gh~V~~~~~~ 45 (424)
+||++.++|+.-.+.|. .+||++|.++|++|+++.+.
T Consensus 4 k~vlITaG~T~E~iD~VR~itN~SSGfiGs~LA~~L~~~Ga~V~li~g~ 52 (229)
T PRK09620 4 KKVLITSGGCLEKWDQVRGHTNMAKGTIGRIIAEELISKGAHVIYLHGY 52 (229)
T ss_pred CEEEEeCCCccCCcCCeeEecCCCcCHHHHHHHHHHHHCCCeEEEEeCC
Confidence 58898888877776653 47999999999999999874
No 186
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=83.27 E-value=2.7 Score=34.06 Aligned_cols=37 Identities=22% Similarity=0.166 Sum_probs=35.0
Q ss_pred ceEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCC
Q 046167 9 RRVVLVPSPHQGHINPMLQLGTILHSKGFSITVVHTQ 45 (424)
Q Consensus 9 ~ril~~~~~~~GH~~p~~~la~~L~~~Gh~V~~~~~~ 45 (424)
.||++.+.++.+|-.-..-++..|..+|++|++++..
T Consensus 4 ~~vl~~~~~gD~H~lG~~iv~~~lr~~G~eVi~LG~~ 40 (137)
T PRK02261 4 KTVVLGVIGADCHAVGNKILDRALTEAGFEVINLGVM 40 (137)
T ss_pred CEEEEEeCCCChhHHHHHHHHHHHHHCCCEEEECCCC
Confidence 5999999999999999999999999999999999875
No 187
>PF02441 Flavoprotein: Flavoprotein; InterPro: IPR003382 This entry contains a diverse range of flavoprotein enzymes, including epidermin biosynthesis protein, EpiD, which has been shown to be a flavoprotein that binds FMN []. This enzyme catalyzes the removal of two reducing equivalents from the cysteine residue of the C-terminal meso-lanthionine of epidermin to form a --C==C-- double bond. This family also includes the B chain of dipicolinate synthase a small polar molecule that accumulates to high concentrations in bacterial endospores, and is thought to play a role in spore heat resistance, or the maintenance of heat resistance []. Dipicolinate synthase catalyses the formation of dipicolinic acid from dihydroxydipicolinic acid. This family also includes phenylacrylic acid decarboxylase 4.1.1 from EC [].; GO: 0003824 catalytic activity; PDB: 3QJG_L 1G63_G 1G5Q_L 1P3Y_1 1QZU_A 1E20_A 1MVN_A 1MVL_A 3ZQU_A 2EJB_A ....
Probab=83.19 E-value=2.5 Score=33.80 Aligned_cols=38 Identities=18% Similarity=0.213 Sum_probs=30.2
Q ss_pred ceEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCCCC
Q 046167 9 RRVVLVPSPHQGHINPMLQLGTILHSKGFSITVVHTQFN 47 (424)
Q Consensus 9 ~ril~~~~~~~GH~~p~~~la~~L~~~Gh~V~~~~~~~~ 47 (424)
|||++...|+.+-.. ...+.++|+++|++|.++.++..
T Consensus 1 k~i~l~vtGs~~~~~-~~~~l~~L~~~g~~v~vv~S~~A 38 (129)
T PF02441_consen 1 KRILLGVTGSIAAYK-APDLLRRLKRAGWEVRVVLSPSA 38 (129)
T ss_dssp -EEEEEE-SSGGGGG-HHHHHHHHHTTTSEEEEEESHHH
T ss_pred CEEEEEEECHHHHHH-HHHHHHHHhhCCCEEEEEECCcH
Confidence 478777777766656 99999999999999999998633
No 188
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=82.95 E-value=14 Score=30.67 Aligned_cols=96 Identities=16% Similarity=0.172 Sum_probs=57.6
Q ss_pred eEEEEcCCCccChHHHHHHHHHHHhCCCeEEE---EeCC-CCCCC--CCCCCCceEEeCCCCCCCCccccccHHHHHHHH
Q 046167 10 RVVLVPSPHQGHINPMLQLGTILHSKGFSITV---VHTQ-FNSPN--PSNHPEFEFQSIPDGLMDVNISARNLVDSILLL 83 (424)
Q Consensus 10 ril~~~~~~~GH~~p~~~la~~L~~~Gh~V~~---~~~~-~~~~~--~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (424)
-|.+++.++.|-....+.+|-+.+.+|++|.+ +-+. ...+. ..+.+++++.....+..... .+..+...
T Consensus 4 ~i~vy~g~G~Gkt~~a~g~~~ra~~~g~~v~~vQFlKg~~~~gE~~~l~~l~~v~~~~~g~~~~~~~---~~~~~~~~-- 78 (159)
T cd00561 4 LIQVYTGNGKGKTTAALGLALRALGHGYRVGVVQFLKGGWKYGELKALERLPNIEIHRMGRGFFWTT---ENDEEDIA-- 78 (159)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEEeCCCCccCHHHHHHhCCCcEEEECCCCCccCC---CChHHHHH--
Confidence 57788889999999999999999999999999 4442 11111 23336788888775543222 11111111
Q ss_pred HHhchhHHHHHHHHHHhhcCCCCCceEEEecCcc
Q 046167 84 NENCREPFRNWLVQMIKEQQPGDEIVCIIYDEVM 117 (424)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~pDlvi~d~~~ 117 (424)
.....++...+.+... .+|++|-|-..
T Consensus 79 --~a~~~~~~a~~~~~~~-----~~dLlVLDEi~ 105 (159)
T cd00561 79 --AAAEGWAFAKEAIASG-----EYDLVILDEIN 105 (159)
T ss_pred --HHHHHHHHHHHHHhcC-----CCCEEEEechH
Confidence 1122222222233222 79999999754
No 189
>COG2910 Putative NADH-flavin reductase [General function prediction only]
Probab=82.76 E-value=1.4 Score=37.23 Aligned_cols=35 Identities=9% Similarity=0.251 Sum_probs=25.3
Q ss_pred ceEEEEcCCCc-cChHHHHHHHHHHHhCCCeEEEEeCCCCC
Q 046167 9 RRVVLVPSPHQ-GHINPMLQLGTILHSKGFSITVVHTQFNS 48 (424)
Q Consensus 9 ~ril~~~~~~~-GH~~p~~~la~~L~~~Gh~V~~~~~~~~~ 48 (424)
|||.++.-.|. |+ .|+++...|||+||.++.....
T Consensus 1 mKIaiIgAsG~~Gs-----~i~~EA~~RGHeVTAivRn~~K 36 (211)
T COG2910 1 MKIAIIGASGKAGS-----RILKEALKRGHEVTAIVRNASK 36 (211)
T ss_pred CeEEEEecCchhHH-----HHHHHHHhCCCeeEEEEeChHh
Confidence 57766654332 44 6889999999999999985433
No 190
>PF12146 Hydrolase_4: Putative lysophospholipase; InterPro: IPR022742 This domain is found in bacteria and eukaryotes and is approximately 110 amino acids in length. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins.
Probab=82.54 E-value=2.9 Score=30.12 Aligned_cols=37 Identities=16% Similarity=0.308 Sum_probs=32.4
Q ss_pred CceEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeC
Q 046167 8 RRRVVLVPSPHQGHINPMLQLGTILHSKGFSITVVHT 44 (424)
Q Consensus 8 ~~ril~~~~~~~GH~~p~~~la~~L~~~Gh~V~~~~~ 44 (424)
++-++++..+...|...+..+|+.|.++|+.|...=.
T Consensus 15 ~k~~v~i~HG~~eh~~ry~~~a~~L~~~G~~V~~~D~ 51 (79)
T PF12146_consen 15 PKAVVVIVHGFGEHSGRYAHLAEFLAEQGYAVFAYDH 51 (79)
T ss_pred CCEEEEEeCCcHHHHHHHHHHHHHHHhCCCEEEEECC
Confidence 3678888888999999999999999999999986643
No 191
>PRK06732 phosphopantothenate--cysteine ligase; Validated
Probab=82.28 E-value=1.5 Score=39.00 Aligned_cols=37 Identities=14% Similarity=0.312 Sum_probs=30.0
Q ss_pred ceEEEEcCCCccChHHH------------HHHHHHHHhCCCeEEEEeCC
Q 046167 9 RRVVLVPSPHQGHINPM------------LQLGTILHSKGFSITVVHTQ 45 (424)
Q Consensus 9 ~ril~~~~~~~GH~~p~------------~~la~~L~~~Gh~V~~~~~~ 45 (424)
||||+.++|+.-.+.|. .+||++|.++||+|+++...
T Consensus 1 ~~vliT~G~T~e~iD~VR~itN~SSG~iG~aLA~~L~~~G~~V~li~r~ 49 (229)
T PRK06732 1 MKILITSGGTTEPIDSVRGITNHSTGQLGKIIAETFLAAGHEVTLVTTK 49 (229)
T ss_pred CEEEEcCCCcccccCCceeecCccchHHHHHHHHHHHhCCCEEEEEECc
Confidence 57888888887777664 37999999999999999764
No 192
>PF04464 Glyphos_transf: CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase ; InterPro: IPR007554 Wall-associated teichoic acids are a heterogeneous class of phosphate-rich polymers that are covalently linked to the cell wall peptidoglycan of Gram-positive bacteria. They consist of a main chain of phosphodiester-linked polyols and/or sugar moieties attached to peptidoglycan via a linkage unit. CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase is responsible for the polymerisation of the main chain of the teichoic acid by sequential transfer of glycerol-phosphate units from CDP-glycerol to the linkage unit lipid [].; GO: 0047355 CDP-glycerol glycerophosphotransferase activity, 0016020 membrane; PDB: 3L7K_B 3L7L_D 3L7I_A 3L7J_D 3L7M_D.
Probab=81.87 E-value=1.2 Score=42.71 Aligned_cols=332 Identities=11% Similarity=0.073 Sum_probs=144.8
Q ss_pred CceEEEEcCCCccChHHHHHHHHHHHh--CCCeEEEEeCCCCCCCCCCCCCceEEeCCCCCCCCccccccHHHHHHHHHH
Q 046167 8 RRRVVLVPSPHQGHINPMLQLGTILHS--KGFSITVVHTQFNSPNPSNHPEFEFQSIPDGLMDVNISARNLVDSILLLNE 85 (424)
Q Consensus 8 ~~ril~~~~~~~GH~~p~~~la~~L~~--~Gh~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (424)
+.+|+|.+..+.+--.-...|-+.|.+ .+.++.|++..... .....+..++... +.
T Consensus 13 ~~~Ivf~~~~g~~~~dN~~~l~~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~v~~~-----------s~--------- 70 (369)
T PF04464_consen 13 KKKIVFESESGNKFSDNPKALFEYLIKNYPDYKIYWIINKKSP--ELKPKGIKVVKFG-----------SL--------- 70 (369)
T ss_dssp EEEEEEEBTTTTBS-HHHHHHHHHHHHH-TTSEEEEEESSGGG------SS-EEEETT-----------SH---------
T ss_pred CCEEEEEECCCCCCCCCHHHHHHHHHhhCCCcEEEEEEcCchH--hhccCCceEEeec-----------HH---------
Confidence 468888888666666667788888874 47899999885333 1112455555432 11
Q ss_pred hchhHHHHHHHHHHhhcCCCCCceEEEecCccchHHHHHHHhCCceEEEecchHHHHHHHHhhhcccccCCCCCChhHHH
Q 046167 86 NCREPFRNWLVQMIKEQQPGDEIVCIIYDEVMYFAEASASQLNVQSIILRTSGAVTVVARLVLFQLKEEGYNPLKESYVQ 165 (424)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~pDlvi~d~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 165 (424)
+.+..-+ +..++|++.........-.+-+..+|.++++...-. ... .. ..... . .+
T Consensus 71 ------~~~~~~~--------~Ak~~i~~~~~~~~~~~~~~~~~~~i~lwHG~~~K~-~g~--~~---~~~~~-~---~~ 126 (369)
T PF04464_consen 71 ------KHIYYLA--------RAKYIISDSYFPDLIYFKKRKNQKYIQLWHGIPLKK-IGY--DS---PDNKN-Y---RK 126 (369)
T ss_dssp ------HHHHHHH--------HEEEEEESS---T--TS---TTSEEEE--SS--SB---GG--G----S---T-S----H
T ss_pred ------HHHHHHH--------hCcEEEECCCCCcccccccCCCcEEEEecCCCcccc-cch--hc---ccccc-c---hh
Confidence 1111222 688999995443323344456788888888752111 000 00 00000 0 00
Q ss_pred HHHHhhhccCCceEEecChhhhhHHHHHHHHhccC---CCeeeecccccCCCCCCCCCcccccccccccccCCCCeEEEE
Q 046167 166 LINNAYSARTSSAVISNTIYCLEESVLSQLQQYFK---VPNFPIGPLHKFAPSSNGSLLKEDTSCISWLNNQSPKSVIYV 242 (424)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~---~~~~~vGp~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~I~v 242 (424)
.. .......+.++..+...-+ .+.+.++ ..+..+|-...+.-.... . .....+.+.++....+.+|+.
T Consensus 127 ~~--~~~~~~~d~~~~~s~~~~~-----~~~~~f~~~~~~i~~~G~PR~D~l~~~~-~-~~~~~i~~~~~~~~~~k~ILy 197 (369)
T PF04464_consen 127 NY--KRNYRNYDYFIVSSEFEKE-----IFKKAFGYPEDKILVTGYPRNDYLFNKS-K-ENRNRIKKKLGIDKDKKVILY 197 (369)
T ss_dssp HH--HHHHTT-SEEEESSHHHHH-----HHHHHTT--GGGEEES--GGGHHHHHST-T--HHHHHHHHTT--SS-EEEEE
T ss_pred hh--hhhccCCcEEEECCHHHHH-----HHHHHhccCcceEEEeCCCeEhHHhccC-H-HHHHHHHHHhccCCCCcEEEE
Confidence 00 2223445566666533221 1222222 236777754332100000 0 001112233332333444444
Q ss_pred EeCCccc---C-------CHHHHHHHHHHHHhCCCCeEEEEcCCCCCCCcccccCchhHH--HHhcCCCcee-eecchhh
Q 046167 243 SLGSVAS---M-------DKKELEEMAWGLVNSKQPFLWVIRPRTNNAPEGIELLPKVLA--EDVQENGYIV-KWAPQKE 309 (424)
Q Consensus 243 s~Gs~~~---~-------~~~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~--~~~~~nv~v~-~~ip~~~ 309 (424)
.. |.-. . ..-....+. .+.+. +..++++.+.. ...... ....+++... +..+..+
T Consensus 198 aP-T~R~~~~~~~~~~~~~~~~~~~l~-~~~~~--~~~li~k~Hp~--------~~~~~~~~~~~~~~i~~~~~~~~~~~ 265 (369)
T PF04464_consen 198 AP-TWRDNSSNEYFKFFFSDLDFEKLN-FLLKN--NYVLIIKPHPN--------MKKKFKDFKEDNSNIIFVSDNEDIYD 265 (369)
T ss_dssp E-----GGG--GGSS----TT-HHHHH-HHHTT--TEEEEE--SHH--------HHTT----TT-TTTEEE-TT-S-HHH
T ss_pred ee-ccccccccccccccccccCHHHHH-HHhCC--CcEEEEEeCch--------hhhchhhhhccCCcEEECCCCCCHHH
Confidence 32 2111 1 111222333 34433 45555644321 111110 0122444444 3445667
Q ss_pred hhccccccccccccchhhHHHhhhcCCceeecCcccchhhHHHHHHhhhhcceec----Cc--ccchHHHHHHHHHHhcc
Q 046167 310 VLSHVAVGGFWSHCGWNSTLESICEGVPMICMPFFEDQKVNARYLSHVWGVGLEL----EH--ELERGAVEKAVRKLTVD 383 (424)
Q Consensus 310 ll~~~~~~~~i~hgG~~t~~eal~~GvP~v~~P~~~DQ~~na~~~~~~~G~g~~~----~~--~~~~~~L~~ai~~ll~~ 383 (424)
+|..+++ +||-- .+.+.|++..++|+|....-.|..... .|.-... ++ -.+.++|.++|+.++++
T Consensus 266 ll~~aDi--LITDy-SSi~fD~~~l~KPiify~~D~~~Y~~~------rg~~~~~~~~~pg~~~~~~~eL~~~i~~~~~~ 336 (369)
T PF04464_consen 266 LLAAADI--LITDY-SSIIFDFLLLNKPIIFYQPDLEEYEKE------RGFYFDYEEDLPGPIVYNFEELIEAIENIIEN 336 (369)
T ss_dssp HHHT-SE--EEESS--THHHHHGGGT--EEEE-TTTTTTTTT------SSBSS-TTTSSSS-EESSHHHHHHHHTTHHHH
T ss_pred HHHhcCE--EEEec-hhHHHHHHHhCCCEEEEeccHHHHhhc------cCCCCchHhhCCCceeCCHHHHHHHHHhhhhC
Confidence 8977787 99975 457799999999999876544444221 1333222 11 35789999999999987
Q ss_pred cchHHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHH
Q 046167 384 KEGEFLRQRAAQLKEEVELSTRKGGFSYNSLNELL 418 (424)
Q Consensus 384 ~~~~~~~~~a~~l~~~~~~~~~~~g~~~~a~~~~~ 418 (424)
+ ..++++.+++.+++-+ .+.|.++++.++.++
T Consensus 337 ~--~~~~~~~~~~~~~~~~-~~Dg~s~eri~~~I~ 368 (369)
T PF04464_consen 337 P--DEYKEKREKFRDKFFK-YNDGNSSERIVNYIF 368 (369)
T ss_dssp H--HHTHHHHHHHHHHHST-T--S-HHHHHHHHHH
T ss_pred C--HHHHHHHHHHHHHhCC-CCCchHHHHHHHHHh
Confidence 4 4456667777777754 345555555555443
No 193
>PF07429 Glyco_transf_56: 4-alpha-L-fucosyltransferase glycosyl transferase group 56; InterPro: IPR009993 This family contains the bacterial enzyme 4-alpha-L-fucosyltransferase (Fuc4NAc transferase) (approximately 360 residues long). This catalyses the synthesis of Fuc4NAc-ManNAcA-GlcNAc-PP-Und (lipid III) as part of the biosynthetic pathway of enterobacterial common antigen (ECA), a polysaccharide comprised of the trisaccharide repeat unit Fuc4NAc-ManNAcA-GlcNAc [].; GO: 0008417 fucosyltransferase activity, 0009246 enterobacterial common antigen biosynthetic process, 0009276 Gram-negative-bacterium-type cell wall
Probab=81.74 E-value=17 Score=34.16 Aligned_cols=82 Identities=22% Similarity=0.208 Sum_probs=62.1
Q ss_pred CCCcee-eecchh---hhhccccccccccc--cchhhHHHhhhcCCceeecCcccchhhHHHHHHhhhhcceecCc-ccc
Q 046167 297 ENGYIV-KWAPQK---EVLSHVAVGGFWSH--CGWNSTLESICEGVPMICMPFFEDQKVNARYLSHVWGVGLELEH-ELE 369 (424)
Q Consensus 297 ~nv~v~-~~ip~~---~ll~~~~~~~~i~h--gG~~t~~eal~~GvP~v~~P~~~DQ~~na~~~~~~~G~g~~~~~-~~~ 369 (424)
+|+.+. +++|-+ .+|..|+++-|.|. =|.|++.-.|..|+|+++- .+.-.-.-+.+ .|+-+.... .++
T Consensus 245 ~~~~iL~e~mpf~eYl~lL~~cDl~if~~~RQQgiGnI~lLl~~G~~v~L~----~~np~~~~l~~-~~ipVlf~~d~L~ 319 (360)
T PF07429_consen 245 ENFQILTEFMPFDEYLALLSRCDLGIFNHNRQQGIGNICLLLQLGKKVFLS----RDNPFWQDLKE-QGIPVLFYGDELD 319 (360)
T ss_pred cceeEhhhhCCHHHHHHHHHhCCEEEEeechhhhHhHHHHHHHcCCeEEEe----cCChHHHHHHh-CCCeEEeccccCC
Confidence 467654 788754 59989998666654 5899999999999999986 34444455666 488777665 899
Q ss_pred hHHHHHHHHHHhcc
Q 046167 370 RGAVEKAVRKLTVD 383 (424)
Q Consensus 370 ~~~L~~ai~~ll~~ 383 (424)
.+.++++=+++.+=
T Consensus 320 ~~~v~ea~rql~~~ 333 (360)
T PF07429_consen 320 EALVREAQRQLANV 333 (360)
T ss_pred HHHHHHHHHHHhhC
Confidence 99999998888643
No 194
>cd01980 Chlide_reductase_Y Chlide_reductase_Y : Y subunit of chlorophyllide (chlide) reductase (BchY). Chlide reductase participates in photosynthetic pigment synthesis playing a role in the conversion of chlorophylls(Chl) into bacteriochlorophylls (BChl). Chlide reductase catalyzes the reduction of the B-ring of the tetrapyrolle. Chlide reductase is a three subunit enzyme (subunits are designated BchX, BchY and BchZ). The similarity between these three subunits and the subunits for nitrogenase suggests that BchX serves as an electron donor for the BchY-BchY catalytic subunits.
Probab=81.47 E-value=12 Score=36.68 Aligned_cols=27 Identities=7% Similarity=-0.091 Sum_probs=22.7
Q ss_pred CceEEEecCccchHHHHHHHhCCceEEEec
Q 046167 107 EIVCIIYDEVMYFAEASASQLNVQSIILRT 136 (424)
Q Consensus 107 ~pDlvi~d~~~~~~~~~A~~lgiP~v~~~~ 136 (424)
+||++|... .+..+|+++|||++.+..
T Consensus 350 ~pDl~Ig~s---~~~~~a~~~giP~~r~~~ 376 (416)
T cd01980 350 RPDLAIGTT---PLVQYAKEKGIPALYYTN 376 (416)
T ss_pred CCCEEEeCC---hhhHHHHHhCCCEEEecC
Confidence 899999884 466799999999998654
No 195
>cd00550 ArsA_ATPase Oxyanion-translocating ATPase (ArsA). This ATPase is involved in transport of arsenite, antimonite or other oxyanions across biological membranes in all three kingdoms of life. ArsA contains a highly conserved AAA motif present in the AAA+ ATPase superfamily associated with a variety of cellular activities. To form a functional ATP-driven pump, ArsA interacts with the permease ArsB, which is a channel-forming integral membrane protein. One of the most interesting features of ArsA is the allosteric activation by its transport substrates. A divalent cation, typically Mg2+, is required for its enzymatic activity.
Probab=81.32 E-value=14 Score=33.39 Aligned_cols=38 Identities=13% Similarity=0.078 Sum_probs=32.1
Q ss_pred EEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCCCCC
Q 046167 11 VVLVPSPHQGHINPMLQLGTILHSKGFSITVVHTQFNS 48 (424)
Q Consensus 11 il~~~~~~~GH~~p~~~la~~L~~~Gh~V~~~~~~~~~ 48 (424)
+++..-||.|...-..++|..++++|++|.++..+...
T Consensus 3 ~~~~gkgG~GKtt~a~~la~~~a~~g~~vLlvd~D~~~ 40 (254)
T cd00550 3 IFFGGKGGVGKTTISAATAVRLAEQGKKVLLVSTDPAH 40 (254)
T ss_pred EEEECCCCchHHHHHHHHHHHHHHCCCCceEEeCCCcc
Confidence 45555778899999999999999999999999987543
No 196
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=81.09 E-value=37 Score=31.38 Aligned_cols=42 Identities=21% Similarity=0.335 Sum_probs=36.0
Q ss_pred ceEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCCCCCCC
Q 046167 9 RRVVLVPSPHQGHINPMLQLGTILHSKGFSITVVHTQFNSPN 50 (424)
Q Consensus 9 ~ril~~~~~~~GH~~p~~~la~~L~~~Gh~V~~~~~~~~~~~ 50 (424)
-+|-+.-.||-|--.=.-.|.+.|.++||+|-++.-++....
T Consensus 52 ~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~ 93 (323)
T COG1703 52 HVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPF 93 (323)
T ss_pred cEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCCC
Confidence 478888899999988888999999999999999998655443
No 197
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=81.05 E-value=22 Score=30.53 Aligned_cols=97 Identities=13% Similarity=0.136 Sum_probs=60.3
Q ss_pred ceEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCCC-C---CCC--CCCCCCceEEeCCCCCCCCccccccHHHHHHH
Q 046167 9 RRVVLVPSPHQGHINPMLQLGTILHSKGFSITVVHTQF-N---SPN--PSNHPEFEFQSIPDGLMDVNISARNLVDSILL 82 (424)
Q Consensus 9 ~ril~~~~~~~GH~~p~~~la~~L~~~Gh~V~~~~~~~-~---~~~--~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (424)
-.|.+++.++.|-....+.+|-+.+.+|++|.++=--. . .+. ....+++++...+.++.... .+..+..
T Consensus 23 g~v~v~~g~GkGKtt~a~g~a~ra~g~G~~V~ivQFlKg~~~~GE~~~l~~l~~v~~~~~g~~~~~~~---~~~~e~~-- 97 (191)
T PRK05986 23 GLLIVHTGNGKGKSTAAFGMALRAVGHGKKVGVVQFIKGAWSTGERNLLEFGGGVEFHVMGTGFTWET---QDRERDI-- 97 (191)
T ss_pred CeEEEECCCCCChHHHHHHHHHHHHHCCCeEEEEEEecCCCccCHHHHHhcCCCcEEEECCCCCcccC---CCcHHHH--
Confidence 58999999999999999999999999999999885321 1 111 23335788888876543322 1111111
Q ss_pred HHHhchhHHHHHHHHHHhhcCCCCCceEEEecCcc
Q 046167 83 LNENCREPFRNWLVQMIKEQQPGDEIVCIIYDEVM 117 (424)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~pDlvi~d~~~ 117 (424)
..+...+....+.+.+. ++|+||-|-..
T Consensus 98 --~~~~~~~~~a~~~l~~~-----~ydlvVLDEi~ 125 (191)
T PRK05986 98 --AAAREGWEEAKRMLADE-----SYDLVVLDELT 125 (191)
T ss_pred --HHHHHHHHHHHHHHhCC-----CCCEEEEehhh
Confidence 12222333333333322 79999999744
No 198
>TIGR02015 BchY chlorophyllide reductase subunit Y. This model represents the Y subunit of the three-subunit enzyme, (bacterio)chlorophyllide reductase. This enzyme is responsible for the reduction of the chlorin B-ring and is closely related to the protochlorophyllide reductase complex which reduces the D-ring. Both of these complexes in turn are homologous to nitrogenase.
Probab=80.18 E-value=12 Score=36.67 Aligned_cols=95 Identities=13% Similarity=0.032 Sum_probs=53.6
Q ss_pred ceEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCCCCCCCCCCCCCceEEeCCCCCCCCccccccHHHHHHHHHHhch
Q 046167 9 RRVVLVPSPHQGHINPMLQLGTILHSKGFSITVVHTQFNSPNPSNHPEFEFQSIPDGLMDVNISARNLVDSILLLNENCR 88 (424)
Q Consensus 9 ~ril~~~~~~~GH~~p~~~la~~L~~~Gh~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (424)
.|+.++..++. .+++++.|.+-|-+|..+++........+ ..... ++ .+..... ..
T Consensus 286 gkv~v~g~~~~-----~~~l~~~l~elGmevv~~~t~~~~~~~~~-~~~~~--~~-~~~~~v~---------------~~ 341 (422)
T TIGR02015 286 GRVTVSGYEGS-----ELLVVRLLLESGADVPYVGTAIPRTAWGA-EDKRW--LE-MLGVEVK---------------YR 341 (422)
T ss_pred CeEEEEcCCcc-----HHHHHHHHHHCCCEEEEEecCCCCccccH-HHHHH--HH-hcCCCce---------------ec
Confidence 47777776655 88999999999999999877522111100 00000 00 0000000 00
Q ss_pred hHHHHHHHHHHhhcCCCCCceEEEecCccchHHHHHHHhCCceEEEe
Q 046167 89 EPFRNWLVQMIKEQQPGDEIVCIIYDEVMYFAEASASQLNVQSIILR 135 (424)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~pDlvi~d~~~~~~~~~A~~lgiP~v~~~ 135 (424)
..+.+.++.+.+. +||++|... -+..+|+++|||++.+.
T Consensus 342 ~dl~~~~~~l~~~-----~pDllig~s---~~~~~A~k~gIP~vr~g 380 (422)
T TIGR02015 342 ASLEDDMEAVLEF-----EPDLAIGTT---PLVQFAKEHGIPALYFT 380 (422)
T ss_pred cCHHHHHHHHhhC-----CCCEEEcCC---cchHHHHHcCCCEEEec
Confidence 1111122333322 899999884 35568999999999865
No 199
>PRK02797 4-alpha-L-fucosyltransferase; Provisional
Probab=79.66 E-value=23 Score=32.81 Aligned_cols=80 Identities=23% Similarity=0.230 Sum_probs=57.3
Q ss_pred CCCcee-eecc---hhhhhccccccccccc--cchhhHHHhhhcCCceeecCcccchhhHHHHHHhhhhcceecCc-ccc
Q 046167 297 ENGYIV-KWAP---QKEVLSHVAVGGFWSH--CGWNSTLESICEGVPMICMPFFEDQKVNARYLSHVWGVGLELEH-ELE 369 (424)
Q Consensus 297 ~nv~v~-~~ip---~~~ll~~~~~~~~i~h--gG~~t~~eal~~GvP~v~~P~~~DQ~~na~~~~~~~G~g~~~~~-~~~ 369 (424)
+|+.+. +++| +..+|+.|+++-|+|+ =|.||+.-.+..|+|+++--. -+.+.. +.+ .|+-+..+. .++
T Consensus 206 ~~~~~L~e~l~f~eYl~lL~~~Dl~~f~~~RQQgiGnl~lLi~~G~~v~l~r~---n~fwqd-l~e-~gv~Vlf~~d~L~ 280 (322)
T PRK02797 206 ENFQILTEKLPFDDYLALLRQCDLGYFIFARQQGIGTLCLLIQLGKPVVLSRD---NPFWQD-LTE-QGLPVLFTGDDLD 280 (322)
T ss_pred ccEEehhhhCCHHHHHHHHHhCCEEEEeechhhHHhHHHHHHHCCCcEEEecC---CchHHH-HHh-CCCeEEecCCccc
Confidence 566655 7776 4569999999777776 589999999999999998621 233333 444 388776666 788
Q ss_pred hHHHHHHHHHHh
Q 046167 370 RGAVEKAVRKLT 381 (424)
Q Consensus 370 ~~~L~~ai~~ll 381 (424)
...+.++=+++.
T Consensus 281 ~~~v~e~~rql~ 292 (322)
T PRK02797 281 EDIVREAQRQLA 292 (322)
T ss_pred HHHHHHHHHHHH
Confidence 888877755543
No 200
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=79.11 E-value=12 Score=33.77 Aligned_cols=36 Identities=22% Similarity=0.433 Sum_probs=33.2
Q ss_pred ceEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeC
Q 046167 9 RRVVLVPSPHQGHINPMLQLGTILHSKGFSITVVHT 44 (424)
Q Consensus 9 ~ril~~~~~~~GH~~p~~~la~~L~~~Gh~V~~~~~ 44 (424)
..++|+..+|.|-..=..+||.+|.++|+.|+|++.
T Consensus 106 ~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~ 141 (254)
T COG1484 106 ENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITA 141 (254)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEH
Confidence 578999999999999999999999988999999988
No 201
>KOG0853 consensus Glycosyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=77.84 E-value=2.7 Score=41.45 Aligned_cols=61 Identities=21% Similarity=0.296 Sum_probs=45.8
Q ss_pred hHHHhhhcCCceeecCcccchhhHHHHHHhhhhcceecCc-ccchHHHHHHHHHHhcccchHHHHHHHHH
Q 046167 327 STLESICEGVPMICMPFFEDQKVNARYLSHVWGVGLELEH-ELERGAVEKAVRKLTVDKEGEFLRQRAAQ 395 (424)
Q Consensus 327 t~~eal~~GvP~v~~P~~~DQ~~na~~~~~~~G~g~~~~~-~~~~~~L~~ai~~ll~~~~~~~~~~~a~~ 395 (424)
++.||+++|+|+|.+ ++-.-+..++. .-.|...++ .-....+++++.++..| +.++.++.+
T Consensus 381 v~IEAMa~glPvvAt----~~GGP~EiV~~-~~tG~l~dp~~e~~~~~a~~~~kl~~~---p~l~~~~~~ 442 (495)
T KOG0853|consen 381 VPIEAMACGLPVVAT----NNGGPAEIVVH-GVTGLLIDPGQEAVAELADALLKLRRD---PELWARMGK 442 (495)
T ss_pred eeHHHHhcCCCEEEe----cCCCceEEEEc-CCcceeeCCchHHHHHHHHHHHHHhcC---HHHHHHHHH
Confidence 679999999999998 55556667777 477877777 33334799999999999 566555443
No 202
>cd01974 Nitrogenase_MoFe_beta Nitrogenase_MoFe_beta: Nitrogenase MoFe protein, beta subunit. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Molybdenum (Mo-) nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. This group contains the beta subunit of the MoFe protein. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=77.84 E-value=21 Score=35.29 Aligned_cols=93 Identities=10% Similarity=0.081 Sum_probs=52.3
Q ss_pred ceEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCCCCCCCCCCCCCceEEeCCCCCCCCccccccHHHHHHHH-----
Q 046167 9 RRVVLVPSPHQGHINPMLQLGTILHSKGFSITVVHTQFNSPNPSNHPEFEFQSIPDGLMDVNISARNLVDSILLL----- 83 (424)
Q Consensus 9 ~ril~~~~~~~GH~~p~~~la~~L~~~Gh~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 83 (424)
+|+.++.. -.-.+.+++.|.+.|-+|..+.+........ ......+...
T Consensus 304 krv~i~g~-----~~~~~~la~~L~elGm~v~~~~~~~~~~~~~---------------------~~~~~~l~~~~~~~~ 357 (435)
T cd01974 304 KKFALYGD-----PDFLIGLTSFLLELGMEPVHVLTGNGGKRFE---------------------KEMQALLDASPYGAG 357 (435)
T ss_pred CEEEEEcC-----hHHHHHHHHHHHHCCCEEEEEEeCCCCHHHH---------------------HHHHHHHhhcCCCCC
Confidence 57776653 2347888999999999998777632111100 0011111110
Q ss_pred -HHhchhHHHHHHHHHHhhcCCCCCceEEEecCccchHHHHHHHhCCceEEEe
Q 046167 84 -NENCREPFRNWLVQMIKEQQPGDEIVCIIYDEVMYFAEASASQLNVQSIILR 135 (424)
Q Consensus 84 -~~~~~~~~~~~~~~~~~~~~~~~~pDlvi~d~~~~~~~~~A~~lgiP~v~~~ 135 (424)
.-.....+.++.+.+.+. +||++|... ....+|+++|||++.++
T Consensus 358 ~~v~~~~d~~e~~~~i~~~-----~pDliiG~s---~~~~~a~~~gip~v~~~ 402 (435)
T cd01974 358 AKVYPGKDLWHLRSLLFTE-----PVDLLIGNT---YGKYIARDTDIPLVRFG 402 (435)
T ss_pred cEEEECCCHHHHHHHHhhc-----CCCEEEECc---cHHHHHHHhCCCEEEee
Confidence 000112222333333332 899999886 45789999999998764
No 203
>PRK08305 spoVFB dipicolinate synthase subunit B; Reviewed
Probab=77.15 E-value=4 Score=35.18 Aligned_cols=37 Identities=11% Similarity=0.099 Sum_probs=29.2
Q ss_pred ceEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCC
Q 046167 9 RRVVLVPSPHQGHINPMLQLGTILHSKGFSITVVHTQ 45 (424)
Q Consensus 9 ~ril~~~~~~~GH~~p~~~la~~L~~~Gh~V~~~~~~ 45 (424)
+||++.-.|+.|=+.-...++++|+++||+|.++.++
T Consensus 6 k~IllgVTGsiaa~k~a~~lir~L~k~G~~V~vv~T~ 42 (196)
T PRK08305 6 KRIGFGLTGSHCTYDEVMPEIEKLVDEGAEVTPIVSY 42 (196)
T ss_pred CEEEEEEcCHHHHHHHHHHHHHHHHhCcCEEEEEECH
Confidence 5777766655554443799999999999999999986
No 204
>PRK13931 stationary phase survival protein SurE; Provisional
Probab=76.94 E-value=55 Score=29.72 Aligned_cols=110 Identities=10% Similarity=0.040 Sum_probs=55.5
Q ss_pred ceEEEEcCCCccChHHHHHHHHHHHhC---CCeEEEEeCCCCCCCCC----CCCCceEEeCCCCCCCCccccccHHHHHH
Q 046167 9 RRVVLVPSPHQGHINPMLQLGTILHSK---GFSITVVHTQFNSPNPS----NHPEFEFQSIPDGLMDVNISARNLVDSIL 81 (424)
Q Consensus 9 ~ril~~~~~~~GH~~p~~~la~~L~~~---Gh~V~~~~~~~~~~~~~----~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (424)
||||+.-=.|. |.--+.+|+++|.+. |++|+++.+...+.... ....+++..+.++ ...-...+.+-
T Consensus 1 M~ILlTNDDGI-~a~Gl~aL~~~l~~~~~~~~~V~VVAP~~eqSg~ghaiT~~~pl~~~~~~~~---~yav~GTPaDC-- 74 (261)
T PRK13931 1 MRILITNDDGI-NAPGLEVLEQIATELAGPDGEVWTVAPAFEQSGVGHCISYTHPMMIAELGPR---RFAAEGSPADC-- 74 (261)
T ss_pred CeEEEEcCCCC-CCHhHHHHHHHHHHhccCCCeEEEEeCCCCCCCCcccccCCCCeEEEEeCCC---eEEEcCchHHH--
Confidence 35555432222 333456677877763 47999998865544322 1123444443311 01111111111
Q ss_pred HHHHhchhHHHHHHHHHHhhcCCCCCceEEEec----------Ccc---chHHHHHHHhCCceEEEecc
Q 046167 82 LLNENCREPFRNWLVQMIKEQQPGDEIVCIIYD----------EVM---YFAEASASQLNVQSIILRTS 137 (424)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~pDlvi~d----------~~~---~~~~~~A~~lgiP~v~~~~~ 137 (424)
+.-.+..+.+. . +||+||+. .++ .+++.-|..+|||.+.+|..
T Consensus 75 ---------V~lal~~~~~~--~--~pDlVvSGIN~G~N~g~~v~ySGTVgAA~Ea~~~GiPsiA~S~~ 130 (261)
T PRK13931 75 ---------VLAALYDVMKD--A--PPDLVLSGVNRGNNSAENVLYSGTVGGAMEAALQGLPAIALSQY 130 (261)
T ss_pred ---------HHHHHHHhcCC--C--CCCEEEECCccCCCCCcCcccchhHHHHHHHHhcCCCeEEEEee
Confidence 11112222210 1 79999984 222 44556667889999999863
No 205
>PF05159 Capsule_synth: Capsule polysaccharide biosynthesis protein; InterPro: IPR007833 This family includes export proteins involved in capsule polysaccharide biosynthesis, such as KpsS P42218 from SWISSPROT and LipB P57038 from SWISSPROT. Capsule polysaccharide modification protein lipB/A is involved in the phospholipid modification of the capsular polysaccharide and is a strong requirement for its translocation to the cell surface. The capsule of Neisseria meningitidis serogroup B and of other meningococcal serogroups and other Gram-negative bacterial pathogens, are anchored in the outer membrane through a 1,2-diacylglycerol moiety. The lipA and lipB genes are located on the 3' end of the ctr operon. lipA and lipB do not encode proteins responsible for diacylglycerophosphatidic acid substitution of the meningococcal capsule polymer, but they are required for proper translocation and surface expression of the lipidated polymer []. KpsS is an unusual sulphate-modified form of the capsular polysaccharide in Rhizobium loti (Mesorhizobium loti). Many plants, including R. loti, enter into symbiotic relationships with bacteria that allow survival in nutrient-limiting environments. KpsS functions as a fucosyl sulphotransferase in vitro. The kpsS gene product shares no significant amino acid similarity with previously identified sulphotransferases []. Sulphated cell surface polysaccharides are required for optimum nodule formation but limit growth rate and nodule colonisation in M. loti [].; GO: 0000271 polysaccharide biosynthetic process, 0015774 polysaccharide transport
Probab=76.79 E-value=7.7 Score=35.38 Aligned_cols=40 Identities=20% Similarity=0.143 Sum_probs=30.4
Q ss_pred eeeecchhhhhccccccccccccchhhHHHhhhcCCceeecCc
Q 046167 301 IVKWAPQKEVLSHVAVGGFWSHCGWNSTLESICEGVPMICMPF 343 (424)
Q Consensus 301 v~~~ip~~~ll~~~~~~~~i~hgG~~t~~eal~~GvP~v~~P~ 343 (424)
+.+-++-.+++.+++. +||-. .++-.||+.+|+|++++..
T Consensus 187 ~~~~~~~~~Ll~~s~~--Vvtin-StvGlEAll~gkpVi~~G~ 226 (269)
T PF05159_consen 187 IDDDVNLYELLEQSDA--VVTIN-STVGLEALLHGKPVIVFGR 226 (269)
T ss_pred ECCCCCHHHHHHhCCE--EEEEC-CHHHHHHHHcCCceEEecC
Confidence 3366777789988886 77753 3466999999999999753
No 206
>PF02606 LpxK: Tetraacyldisaccharide-1-P 4'-kinase; InterPro: IPR003758 Tetraacyldisaccharide 4'-kinase phosphorylates the 4'-position of a tetraacyldisaccharide 1-phosphate precursor (DS-1-P) of lipid A, but the enzyme has not yet been purified because of instability []. This enzyme is involved in the synthesis of lipid A portion of the bacterial lipopolysaccharide layer (LPS).; GO: 0005524 ATP binding, 0009029 tetraacyldisaccharide 4'-kinase activity, 0009245 lipid A biosynthetic process
Probab=76.67 E-value=8.1 Score=36.39 Aligned_cols=37 Identities=11% Similarity=0.341 Sum_probs=29.9
Q ss_pred EcCCCccChHHHHHHHHHHHhCCCeEEEEeCCCCCCC
Q 046167 14 VPSPHQGHINPMLQLGTILHSKGFSITVVHTQFNSPN 50 (424)
Q Consensus 14 ~~~~~~GH~~p~~~la~~L~~~Gh~V~~~~~~~~~~~ 50 (424)
++.||+|-.-=...|++.|+++|++|.+++..+....
T Consensus 43 ltvGGTGKTP~v~~L~~~L~~~G~~~~IlSRGYg~~~ 79 (326)
T PF02606_consen 43 LTVGGTGKTPLVIWLARLLQARGYRPAILSRGYGRKS 79 (326)
T ss_pred cccCCCCchHHHHHHHHHHHhcCCceEEEcCCCCCCC
Confidence 3467889866677899999999999999998755444
No 207
>PLN03064 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=74.27 E-value=31 Score=37.43 Aligned_cols=101 Identities=11% Similarity=0.002 Sum_probs=58.7
Q ss_pred cchhh---hhccccccccccc---cchhhH-HHhhhcCC---ceeecCcccchhhHHHHHHhhhh-cceecCcccchHHH
Q 046167 305 APQKE---VLSHVAVGGFWSH---CGWNST-LESICEGV---PMICMPFFEDQKVNARYLSHVWG-VGLELEHELERGAV 373 (424)
Q Consensus 305 ip~~~---ll~~~~~~~~i~h---gG~~t~-~eal~~Gv---P~v~~P~~~DQ~~na~~~~~~~G-~g~~~~~~~~~~~L 373 (424)
+|+.+ +++.++| ++.. -|+|.+ .|+++++. -+++++- =..-|. . +| -|+.+.+ .+.+.+
T Consensus 448 l~~eeL~AlY~~ADV--~lvTslrDGmNLva~Eyva~~~~~~GvLILSE---faGaa~---~-L~~~AllVNP-~D~~~v 517 (934)
T PLN03064 448 LDFHALCALYAVTDV--ALVTSLRDGMNLVSYEFVACQDSKKGVLILSE---FAGAAQ---S-LGAGAILVNP-WNITEV 517 (934)
T ss_pred CCHHHHHHHHHhCCE--EEeCccccccCchHHHHHHhhcCCCCCeEEeC---CCchHH---H-hCCceEEECC-CCHHHH
Confidence 55543 7777777 5544 477755 69999965 1222222 112222 2 33 4677777 899999
Q ss_pred HHHHHHHhc-ccchHHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHh
Q 046167 374 EKAVRKLTV-DKEGEFLRQRAAQLKEEVELSTRKGGFSYNSLNELLDLIN 422 (424)
Q Consensus 374 ~~ai~~ll~-~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~a~~~~~~~~~ 422 (424)
+++|.+.|+ ++ +.-+++.+++.+.+.. .+...=++.+++.+.
T Consensus 518 A~AI~~AL~M~~--~Er~~r~~~~~~~V~~-----~d~~~Wa~~fl~~L~ 560 (934)
T PLN03064 518 AASIAQALNMPE--EEREKRHRHNFMHVTT-----HTAQEWAETFVSELN 560 (934)
T ss_pred HHHHHHHHhCCH--HHHHHHHHHHHhhccc-----CCHHHHHHHHHHHHH
Confidence 999999997 42 3334444444444443 355555555555543
No 208
>PRK01077 cobyrinic acid a,c-diamide synthase; Validated
Probab=73.55 E-value=19 Score=35.78 Aligned_cols=35 Identities=17% Similarity=0.307 Sum_probs=28.4
Q ss_pred eEEEEcC-CCccChHHHHHHHHHHHhCCCeEEEEeC
Q 046167 10 RVVLVPS-PHQGHINPMLQLGTILHSKGFSITVVHT 44 (424)
Q Consensus 10 ril~~~~-~~~GH~~p~~~la~~L~~~Gh~V~~~~~ 44 (424)
+|++..- .+.|-..-...|+++|+++|++|..+-+
T Consensus 5 ~i~I~gt~s~~GKT~it~~L~~~L~~~G~~V~~fK~ 40 (451)
T PRK01077 5 ALVIAAPASGSGKTTVTLGLMRALRRRGLRVQPFKV 40 (451)
T ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHhCCCCcceeec
Confidence 5655543 4568888899999999999999998866
No 209
>KOG1250 consensus Threonine/serine dehydratases [Amino acid transport and metabolism]
Probab=72.63 E-value=94 Score=29.94 Aligned_cols=33 Identities=15% Similarity=0.068 Sum_probs=23.2
Q ss_pred CceEEEecCcc--chHHHHHHHhCCceEEEecchH
Q 046167 107 EIVCIIYDEVM--YFAEASASQLNVQSIILRTSGA 139 (424)
Q Consensus 107 ~pDlvi~d~~~--~~~~~~A~~lgiP~v~~~~~~~ 139 (424)
++-+|-+...- .++...|++||||+.++-+...
T Consensus 114 ~~gViasSaGNha~a~Ayaa~~LgipaTIVmP~~t 148 (457)
T KOG1250|consen 114 KAGVIASSAGNHAQAAAYAARKLGIPATIVMPVAT 148 (457)
T ss_pred cCceEEecCccHHHHHHHHHHhcCCceEEEecCCC
Confidence 45555555332 6777899999999988866643
No 210
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=72.00 E-value=22 Score=30.01 Aligned_cols=96 Identities=13% Similarity=0.149 Sum_probs=57.3
Q ss_pred ceEEEEcCCCccChHHHHHHHHHHHhCCCeEEEE---eCC-CCCCC--CCCCCCceEEeCCCCCCCCccccccHHHHHHH
Q 046167 9 RRVVLVPSPHQGHINPMLQLGTILHSKGFSITVV---HTQ-FNSPN--PSNHPEFEFQSIPDGLMDVNISARNLVDSILL 82 (424)
Q Consensus 9 ~ril~~~~~~~GH~~p~~~la~~L~~~Gh~V~~~---~~~-~~~~~--~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (424)
--|.+++..+.|-..-.+.+|-+.+.+|++|.++ -+. ...+. ... .++++.....++..... +..+..
T Consensus 6 Gli~v~~g~GkGKtt~a~g~a~ra~~~g~~v~ivQFlKg~~~~GE~~~l~~-~~~~~~~~g~g~~~~~~---~~~~~~-- 79 (173)
T TIGR00708 6 GIIIVHTGNGKGKTTAAFGMALRALGHGKKVGVIQFIKGAWPNGERAAFEP-HGVEFQVMGTGFTWETQ---NREADT-- 79 (173)
T ss_pred cEEEEECCCCCChHHHHHHHHHHHHHCCCeEEEEEEecCCcccChHHHHHh-cCcEEEECCCCCeecCC---CcHHHH--
Confidence 4678888899999999999999999999999655 332 11111 222 27888888766543321 111111
Q ss_pred HHHhchhHHHHHHHHHHhhcCCCCCceEEEecCcc
Q 046167 83 LNENCREPFRNWLVQMIKEQQPGDEIVCIIYDEVM 117 (424)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~pDlvi~d~~~ 117 (424)
......+....+.+... ++|+||-|-..
T Consensus 80 --~~~~~~~~~a~~~l~~~-----~~DlvVLDEi~ 107 (173)
T TIGR00708 80 --AIAKAAWQHAKEMLADP-----ELDLVLLDELT 107 (173)
T ss_pred --HHHHHHHHHHHHHHhcC-----CCCEEEehhhH
Confidence 11222222233333322 79999999744
No 211
>PF06506 PrpR_N: Propionate catabolism activator; InterPro: IPR010524 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents a domain found at the N terminus of several sigma54- dependent transcriptional activators including PrpR, which activates catabolism of propionate. In Salmonella enterica subsp. enterica serovar Typhimurium, PrpR acts as a sensor of 2-methylcitrate (2-MC), an intermediate of the 2-methylcitric acid cycle used by this bacterium to convert propionate to pyruvate []. ; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay); PDB: 2Q5C_A 2PJU_A.
Probab=71.88 E-value=9.6 Score=32.29 Aligned_cols=111 Identities=13% Similarity=0.088 Sum_probs=57.7
Q ss_pred ccChHHHHHHHHHH-HhCCCeEEEEeCCCCCCCCCCCCCceEEeCCCCC----------C-C-Cc---cccc---cHHHH
Q 046167 19 QGHINPMLQLGTIL-HSKGFSITVVHTQFNSPNPSNHPEFEFQSIPDGL----------M-D-VN---ISAR---NLVDS 79 (424)
Q Consensus 19 ~GH~~p~~~la~~L-~~~Gh~V~~~~~~~~~~~~~~~~g~~~~~~~~~~----------~-~-~~---~~~~---~~~~~ 79 (424)
.+.+.-.+..|+.| .+.|.+|.+.-+......... -++.++.++... . . .. .... .....
T Consensus 16 ~~~~e~~v~~a~~~~~~~g~dViIsRG~ta~~lr~~-~~iPVV~I~~s~~Dil~al~~a~~~~~~Iavv~~~~~~~~~~~ 94 (176)
T PF06506_consen 16 EASLEEAVEEARQLLESEGADVIISRGGTAELLRKH-VSIPVVEIPISGFDILRALAKAKKYGPKIAVVGYPNIIPGLES 94 (176)
T ss_dssp E--HHHHHHHHHHHHTTTT-SEEEEEHHHHHHHHCC--SS-EEEE---HHHHHHHHHHCCCCTSEEEEEEESS-SCCHHH
T ss_pred EecHHHHHHHHHHhhHhcCCeEEEECCHHHHHHHHh-CCCCEEEECCCHhHHHHHHHHHHhcCCcEEEEecccccHHHHH
Confidence 35677889999999 889999999877422222222 255566555110 0 0 00 0000 11122
Q ss_pred HHHHHHh--------chhHHHHHHHHHHhhcCCCCCceEEEecCccchHHHHHHHhCCceEEEecch
Q 046167 80 ILLLNEN--------CREPFRNWLVQMIKEQQPGDEIVCIIYDEVMYFAEASASQLNVQSIILRTSG 138 (424)
Q Consensus 80 ~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~pDlvi~d~~~~~~~~~A~~lgiP~v~~~~~~ 138 (424)
+..+... ....+...++.+.+. +.|+||.+. .+...|+++|+|++.+.++.
T Consensus 95 ~~~ll~~~i~~~~~~~~~e~~~~i~~~~~~-----G~~viVGg~---~~~~~A~~~gl~~v~i~sg~ 153 (176)
T PF06506_consen 95 IEELLGVDIKIYPYDSEEEIEAAIKQAKAE-----GVDVIVGGG---VVCRLARKLGLPGVLIESGE 153 (176)
T ss_dssp HHHHHT-EEEEEEESSHHHHHHHHHHHHHT-----T--EEEESH---HHHHHHHHTTSEEEESS--H
T ss_pred HHHHhCCceEEEEECCHHHHHHHHHHHHHc-----CCcEEECCH---HHHHHHHHcCCcEEEEEecH
Confidence 2222211 133455566777665 899999985 35789999999999876643
No 212
>PRK11519 tyrosine kinase; Provisional
Probab=70.95 E-value=1.1e+02 Score=32.39 Aligned_cols=38 Identities=13% Similarity=0.311 Sum_probs=30.4
Q ss_pred CceEEEEc--CCCccChHHHHHHHHHHHhCCCeEEEEeCC
Q 046167 8 RRRVVLVP--SPHQGHINPMLQLGTILHSKGFSITVVHTQ 45 (424)
Q Consensus 8 ~~ril~~~--~~~~GH~~p~~~la~~L~~~Gh~V~~~~~~ 45 (424)
+.|+++++ .|+.|-..-...||..|+..|++|.++-.+
T Consensus 525 ~~kvi~vts~~~geGKTt~a~nLA~~la~~g~rvLlID~D 564 (719)
T PRK11519 525 QNNVLMMTGVSPSIGKTFVCANLAAVISQTNKRVLLIDCD 564 (719)
T ss_pred CceEEEEECCCCCCCHHHHHHHHHHHHHhCCCcEEEEeCC
Confidence 34555544 457788888999999999999999999775
No 213
>cd01965 Nitrogenase_MoFe_beta_like Nitrogenase_MoFe_beta_like: Nitrogenase MoFe protein, beta subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. This group contains the beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (Fe
Probab=70.59 E-value=14 Score=36.26 Aligned_cols=99 Identities=15% Similarity=0.156 Sum_probs=52.7
Q ss_pred CceEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCCCCCCCCCCCCCceEEeCCCCCCCCccccccHHHHHHHHHHhc
Q 046167 8 RRRVVLVPSPHQGHINPMLQLGTILHSKGFSITVVHTQFNSPNPSNHPEFEFQSIPDGLMDVNISARNLVDSILLLNENC 87 (424)
Q Consensus 8 ~~ril~~~~~~~GH~~p~~~la~~L~~~Gh~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (424)
.+|+++...+ .-.+.+++.|.+.|-+|..+..........+ .+++..-..+.... ...
T Consensus 299 gk~v~i~~~~-----~~~~~l~~~L~e~G~~v~~v~~~~~~~~~~~--~~~~~~~~~~~~~~---------------~v~ 356 (428)
T cd01965 299 GKRVAIAGDP-----DLLLGLSRFLLEMGAEPVAAVTGTDNPPFEK--RMELLASLEGIPAE---------------VVF 356 (428)
T ss_pred CCEEEEEcCh-----HHHHHHHHHHHHcCCcceEEEEcCCCchhHH--HHHHhhhhcCCCce---------------EEE
Confidence 3677777432 3567899999999999987776422222100 00000000000000 001
Q ss_pred hhHHHHHHHHHHhhcCCCCCceEEEecCccchHHHHHHHhCCceEEEec
Q 046167 88 REPFRNWLVQMIKEQQPGDEIVCIIYDEVMYFAEASASQLNVQSIILRT 136 (424)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~pDlvi~d~~~~~~~~~A~~lgiP~v~~~~ 136 (424)
.....++.+.+.+. +||+||.+. ....+|+++|+|++.++.
T Consensus 357 ~~d~~el~~~i~~~-----~pdliig~~---~~~~~a~~~~ip~i~~~~ 397 (428)
T cd01965 357 VGDLWDLESLAKEE-----PVDLLIGNS---HGRYLARDLGIPLVRVGF 397 (428)
T ss_pred CCCHHHHHHHhhcc-----CCCEEEECc---hhHHHHHhcCCCEEEecC
Confidence 11222333333332 799999996 346788999999986543
No 214
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=70.40 E-value=3.3 Score=34.37 Aligned_cols=31 Identities=16% Similarity=0.394 Sum_probs=26.6
Q ss_pred eEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCC
Q 046167 10 RVVLVPSPHQGHINPMLQLGTILHSKGFSITVVHTQ 45 (424)
Q Consensus 10 ril~~~~~~~GH~~p~~~la~~L~~~Gh~V~~~~~~ 45 (424)
||.++..|.+|+ ++|..|.++||+|++++.+
T Consensus 1 KI~ViGaG~~G~-----AlA~~la~~g~~V~l~~~~ 31 (157)
T PF01210_consen 1 KIAVIGAGNWGT-----ALAALLADNGHEVTLWGRD 31 (157)
T ss_dssp EEEEESSSHHHH-----HHHHHHHHCTEEEEEETSC
T ss_pred CEEEECcCHHHH-----HHHHHHHHcCCEEEEEecc
Confidence 577777777776 8999999999999999885
No 215
>PF10093 DUF2331: Uncharacterized protein conserved in bacteria (DUF2331); InterPro: IPR016633 This entry describes a conserved hypothetical protein that typically is encoded next to the gene efp for translation elongation factor P. The function is unknown.
Probab=69.41 E-value=54 Score=31.39 Aligned_cols=163 Identities=15% Similarity=0.166 Sum_probs=0.0
Q ss_pred CcccCCHHHHHHHHHHHHhCCCCeEEEEcCCCCCCCc------ccccCchhHHHHhcCCCcee--eecchhh---hhccc
Q 046167 246 SVASMDKKELEEMAWGLVNSKQPFLWVIRPRTNNAPE------GIELLPKVLAEDVQENGYIV--KWAPQKE---VLSHV 314 (424)
Q Consensus 246 s~~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~------~~~~l~~~~~~~~~~nv~v~--~~ip~~~---ll~~~ 314 (424)
|.+..+..-+..+++++++.+..+...+..+...++- ......... ..+++.+. +|+||.+ +|-.|
T Consensus 188 slF~Ye~~~l~~ll~~~~~~~~pv~llvp~g~~~~~~~~~~~~~~~~~g~~~---~~g~l~l~~lPF~~Q~~yD~LLw~c 264 (374)
T PF10093_consen 188 SLFCYENAALASLLDAWAASPKPVHLLVPEGRALNSLAAWLGDALLQAGDSW---QRGNLTLHVLPFVPQDDYDRLLWAC 264 (374)
T ss_pred EEEeCCchHHHHHHHHHhcCCCCeEEEecCCccHHHHHHHhccccccCcccc---ccCCeEEEECCCCCHHHHHHHHHhC
Q ss_pred cccccccccchhhHHHhhhcCCcee--ecCcccchhhH--HHHHHhhhhcceecCcccchHHHHHHHHHHhcccc-----
Q 046167 315 AVGGFWSHCGWNSTLESICEGVPMI--CMPFFEDQKVN--ARYLSHVWGVGLELEHELERGAVEKAVRKLTVDKE----- 385 (424)
Q Consensus 315 ~~~~~i~hgG~~t~~eal~~GvP~v--~~P~~~DQ~~n--a~~~~~~~G~g~~~~~~~~~~~L~~ai~~ll~~~~----- 385 (424)
|+ .||= |=-|+..|.-+|+|.| +.|+..|=+.. -..++. +.-+........-..+-.+....-....
T Consensus 265 D~-NfVR--GEDSfVRAqwAgkPFvWhIYpQ~d~aHl~KL~AFL~~-y~~~~~~~~~~a~~~~~~~wN~~~~~~~~w~~~ 340 (374)
T PF10093_consen 265 DF-NFVR--GEDSFVRAQWAGKPFVWHIYPQEDDAHLDKLDAFLDR-YCAGLPPEAAAALRAFWRAWNGGQDAPDAWQDL 340 (374)
T ss_pred cc-ceEe--cchHHHHHHHhCCCceEecCcCchhhHHHHHHHHHHH-HhhcCCHHHHHHHHHHHHHHhCCCCchhhHHHH
Q ss_pred ---hHHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHH
Q 046167 386 ---GEFLRQRAAQLKEEVELSTRKGGFSYNSLNELLD 419 (424)
Q Consensus 386 ---~~~~~~~a~~l~~~~~~~~~~~g~~~~a~~~~~~ 419 (424)
.+.+++.++.++..+.+. ++....+..+++
T Consensus 341 ~~~~~~~~~~a~~w~~~l~~~----~dLa~~L~~F~~ 373 (374)
T PF10093_consen 341 LEHLPEWQQHARAWRQQLLAQ----GDLASNLVQFVE 373 (374)
T ss_pred HHHhHHHHHHHHHHHHHHHhc----cCHHHHHHHHHh
No 216
>smart00851 MGS MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase and the domain is also found in Carbamoyl phosphate synthetase (CPS) where it forms a regulatory domain that binds to the allosteric effector ornithine. This family also includes inosicase. The known structures in this family show a common phosphate binding site PUBMED:10526357.
Probab=69.32 E-value=12 Score=27.55 Aligned_cols=79 Identities=14% Similarity=0.096 Sum_probs=44.4
Q ss_pred HHHHHHHHHhCCCeEEEEeCCCCCCCCCCCCCceEE-eCCCCCCCCccccccHHHHHHHHHHhchhHHHHHHHHHHhhcC
Q 046167 25 MLQLGTILHSKGFSITVVHTQFNSPNPSNHPEFEFQ-SIPDGLMDVNISARNLVDSILLLNENCREPFRNWLVQMIKEQQ 103 (424)
Q Consensus 25 ~~~la~~L~~~Gh~V~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (424)
++.+++.|.+.|++| ++|.. ....... .|+.+. .+++. ..+ . .++++.+...
T Consensus 2 ~~~~~~~l~~lG~~i-~AT~g-Ta~~L~~-~Gi~~~~~~~ki-~~~-----~----------------~~i~~~i~~g-- 54 (90)
T smart00851 2 LVELAKRLAELGFEL-VATGG-TAKFLRE-AGLPVKTLHPKV-HGG-----I----------------LAILDLIKNG-- 54 (90)
T ss_pred HHHHHHHHHHCCCEE-EEccH-HHHHHHH-CCCcceeccCCC-CCC-----C----------------HHHHHHhcCC--
Confidence 468999999999999 46553 2222221 455542 22211 000 0 0234444433
Q ss_pred CCCCceEEEecCc---------cchHHHHHHHhCCceEE
Q 046167 104 PGDEIVCIIYDEV---------MYFAEASASQLNVQSII 133 (424)
Q Consensus 104 ~~~~pDlvi~d~~---------~~~~~~~A~~lgiP~v~ 133 (424)
+.|+||..+. ......+|...+||+++
T Consensus 55 ---~id~VIn~~~~~~~~~~~d~~~iRr~A~~~~Ip~~T 90 (90)
T smart00851 55 ---EIDLVINTLYPLGAQPHEDGKALRRAAENIDIPGAT 90 (90)
T ss_pred ---CeEEEEECCCcCcceeccCcHHHHHHHHHcCCCeeC
Confidence 8999998542 12344678888999863
No 217
>COG1797 CobB Cobyrinic acid a,c-diamide synthase [Coenzyme metabolism]
Probab=68.53 E-value=5.6 Score=38.46 Aligned_cols=35 Identities=23% Similarity=0.340 Sum_probs=27.2
Q ss_pred eEEEE-cCCCccChHHHHHHHHHHHhCCCeEEEEeC
Q 046167 10 RVVLV-PSPHQGHINPMLQLGTILHSKGFSITVVHT 44 (424)
Q Consensus 10 ril~~-~~~~~GH~~p~~~la~~L~~~Gh~V~~~~~ 44 (424)
+|++. +..+.|-..-.+.|+++|++||++|.=+-.
T Consensus 2 ~vvIAg~~SG~GKTTvT~glm~aL~~rg~~VqpfKv 37 (451)
T COG1797 2 AVVIAGTSSGSGKTTVTLGLMRALRRRGLKVQPFKV 37 (451)
T ss_pred ceEEecCCCCCcHHHHHHHHHHHHHhcCCccccccc
Confidence 34444 355779999999999999999999975544
No 218
>PF00862 Sucrose_synth: Sucrose synthase; InterPro: IPR000368 Sucrose synthases catalyse the synthesis of sucrose 2.4.1.13 from EC in the following reaction: UDP-glucose + D-fructose = UDP + sucrose This family includes the bulk of the sucrose synthase protein. However the carboxyl terminal region of the sucrose synthases belongs to the glycosyl transferase family IPR001296 from INTERPRO. This enzyme is found mainly in plants but also appears in bacteria.; GO: 0005985 sucrose metabolic process; PDB: 2R60_A 2R66_A 2R68_A 3S27_G 3S29_A 3S28_A.
Probab=68.52 E-value=11 Score=37.22 Aligned_cols=155 Identities=17% Similarity=0.128 Sum_probs=73.3
Q ss_pred CccChHHHHHHHHHHHh--------CCC----eEEEEeCC-CCCCC---------CCCCCCceEEeCCCCCCCC----cc
Q 046167 18 HQGHINPMLQLGTILHS--------KGF----SITVVHTQ-FNSPN---------PSNHPEFEFQSIPDGLMDV----NI 71 (424)
Q Consensus 18 ~~GH~~p~~~la~~L~~--------~Gh----~V~~~~~~-~~~~~---------~~~~~g~~~~~~~~~~~~~----~~ 71 (424)
++|.+.=.+.+|++|.+ .|- +|.++|.- +.... .....+..++.+|=+-..+ ..
T Consensus 295 TGGQVvYVleqarALe~e~~~ri~~~gl~i~p~i~i~TRlIpd~~~t~~~q~le~~~gt~~a~IlRvPF~~~~gi~~kwi 374 (550)
T PF00862_consen 295 TGGQVVYVLEQARALENEMLYRIKLQGLDITPKIDIVTRLIPDAKGTTCNQRLEKVSGTENARILRVPFGPEKGILRKWI 374 (550)
T ss_dssp SSHHHHHHHHHHHHHHHHTHHHHHHTT-----EEEEEEE--TBTTCGGGTSSEEEETTESSEEEEEE-ESESTEEE-S--
T ss_pred CCCcEEEEeHHHHHHHHHHHHHHHhcCCCCCCceeeecccccCCcCCCccccccccCCCCCcEEEEecCCCCcchhhhcc
Confidence 45666667888888864 354 47777653 22211 1111345666666221111 11
Q ss_pred ccccHHHHHHHHHHhchhHHHHHHHHHHhhcCCCCCceEEEecCcc--chHHHHHHHhCCceEEEecchHHHHHHHHhhh
Q 046167 72 SARNLVDSILLLNENCREPFRNWLVQMIKEQQPGDEIVCIIYDEVM--YFAEASASQLNVQSIILRTSGAVTVVARLVLF 149 (424)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pDlvi~d~~~--~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~ 149 (424)
.....+.++..+.. ...+++.+.+ +. +||+|+..+.- ..+..+|+++|||...+.++--...-.
T Consensus 375 srf~lWPyLe~fa~---d~~~~i~~e~----~~--~PdlI~GnYsDgnlvA~LLs~~lgv~~~~iaHsLek~Ky~----- 440 (550)
T PF00862_consen 375 SRFDLWPYLEEFAD---DAEREILAEL----QG--KPDLIIGNYSDGNLVASLLSRKLGVTQCFIAHSLEKTKYE----- 440 (550)
T ss_dssp -GGG-GGGHHHHHH---HHHHHHHHHH----TS----SEEEEEHHHHHHHHHHHHHHHT-EEEEE-SS-HHHHHH-----
T ss_pred chhhchhhHHHHHH---HHHHHHHHHh----CC--CCcEEEeccCcchHHHHHHHhhcCCceehhhhcccccccc-----
Confidence 12233334444433 2222233333 22 79999987532 777789999999999988775332211
Q ss_pred cccccCCCCCChhHHHHHHH----hhhccCCceEEecChhhhh
Q 046167 150 QLKEEGYNPLKESYVQLINN----AYSARTSSAVISNTIYCLE 188 (424)
Q Consensus 150 ~~~~~~~~p~~~~~~~~~~~----~~~~~~~~~~~~~~~~~l~ 188 (424)
....+....+..++...+ .-.+..++.++..|..|..
T Consensus 441 --~s~~~w~e~e~~Yhfs~qftAd~iamn~adfIItST~QEI~ 481 (550)
T PF00862_consen 441 --DSDLYWKEIEEKYHFSCQFTADLIAMNAADFIITSTYQEIA 481 (550)
T ss_dssp --TTTTTSHHHHHHH-HHHHHHHHHHHHHHSSEEEESSHHHHH
T ss_pred --ccCCCHHHHHhhccchhhhhHHHHHhhcCCEEEEcchHhhc
Confidence 011111111122333333 3335667888888876665
No 219
>COG0143 MetG Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=68.18 E-value=9.9 Score=38.51 Aligned_cols=38 Identities=18% Similarity=0.475 Sum_probs=30.0
Q ss_pred eEEEEc-------CCCccChHHHHH---HHHHHHhCCCeEEEEeCCCC
Q 046167 10 RVVLVP-------SPHQGHINPMLQ---LGTILHSKGFSITVVHTQFN 47 (424)
Q Consensus 10 ril~~~-------~~~~GH~~p~~~---la~~L~~~Gh~V~~~~~~~~ 47 (424)
++++.+ .+..||++++++ +|+-++-+||+|.|+|+...
T Consensus 6 ~~~VTtalpY~Ng~~HlGH~~~~l~ADv~aRy~Rl~G~~v~fvtGtDe 53 (558)
T COG0143 6 KILVTTALPYPNGPPHLGHLYTYLAADVYARYLRLRGYEVFFLTGTDE 53 (558)
T ss_pred cEEEecCCCCCCCCcchhhHHHHHHHHHHHHHHHhcCCeEEEEeccCC
Confidence 666665 235699998885 79999999999999998633
No 220
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=68.02 E-value=82 Score=27.42 Aligned_cols=107 Identities=15% Similarity=0.033 Sum_probs=64.6
Q ss_pred HHHHHHhhcCCCCCceEEEecCccchHHHHHHHhCCceEEEecchHHHHHHHHhhhcccccCCCCCChhHHHHHHHhhhc
Q 046167 94 WLVQMIKEQQPGDEIVCIIYDEVMYFAEASASQLNVQSIILRTSGAVTVVARLVLFQLKEEGYNPLKESYVQLINNAYSA 173 (424)
Q Consensus 94 ~~~~~~~~~~~~~~pDlvi~d~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~ 173 (424)
.++...+. +.+++++-.+.......|++.|+|++.=..++.-..... .
T Consensus 72 ~a~~a~~a-----GA~FivsP~~~~~v~~~~~~~~i~~iPG~~TptEi~~A~---------------------------~ 119 (204)
T TIGR01182 72 QLRQAVDA-----GAQFIVSPGLTPELAKHAQDHGIPIIPGVATPSEIMLAL---------------------------E 119 (204)
T ss_pred HHHHHHHc-----CCCEEECCCCCHHHHHHHHHcCCcEECCCCCHHHHHHHH---------------------------H
Confidence 44555554 899999988888888999999999996333222211111 1
Q ss_pred cCCceEEecChhhhh-HHHHHHHHhccC-CCeeeecccccCCCCCCCCCcccccccccccccCCCCeEEEEEeCCccc
Q 046167 174 RTSSAVISNTIYCLE-ESVLSQLQQYFK-VPNFPIGPLHKFAPSSNGSLLKEDTSCISWLNNQSPKSVIYVSLGSVAS 249 (424)
Q Consensus 174 ~~~~~~~~~~~~~l~-~~~~~~~~~~~~-~~~~~vGp~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~I~vs~Gs~~~ 249 (424)
...+.+.+---..+. +.++..+...+| -++.++|.+... .+.+|++.. .+.+..||...
T Consensus 120 ~Ga~~vKlFPA~~~GG~~yikal~~plp~i~~~ptGGV~~~-------------N~~~~l~aG----a~~vg~Gs~L~ 180 (204)
T TIGR01182 120 LGITALKLFPAEVSGGVKMLKALAGPFPQVRFCPTGGINLA-------------NVRDYLAAP----NVACGGGSWLV 180 (204)
T ss_pred CCCCEEEECCchhcCCHHHHHHHhccCCCCcEEecCCCCHH-------------HHHHHHhCC----CEEEEEChhhc
Confidence 222222221112232 566666666563 247788887643 267788832 68888888764
No 221
>PRK03359 putative electron transfer flavoprotein FixA; Reviewed
Probab=67.98 E-value=9.2 Score=34.60 Aligned_cols=31 Identities=13% Similarity=0.014 Sum_probs=25.2
Q ss_pred CceEEEecCcc------chHHHHHHHhCCceEEEecc
Q 046167 107 EIVCIIYDEVM------YFAEASASQLNVQSIILRTS 137 (424)
Q Consensus 107 ~pDlvi~d~~~------~~~~~~A~~lgiP~v~~~~~ 137 (424)
.|||||+...+ ..+..+|+.||+|+++....
T Consensus 112 ~~DLVl~G~~s~D~~tgqvg~~lAe~Lg~P~vt~v~~ 148 (256)
T PRK03359 112 GFDLILCGDGSSDLYAQQVGLLVGEILNIPAINGVSK 148 (256)
T ss_pred CCCEEEEcCccccCCCCcHHHHHHHHhCCCceeeEEE
Confidence 79999996444 57789999999999986543
No 222
>PF06925 MGDG_synth: Monogalactosyldiacylglycerol (MGDG) synthase; InterPro: IPR009695 This entry represents a conserved region of approximately 180 residues found towirds the N terminus of a number of plant and bacterial diacylglycerol glucosyltransferases, such as monogalactosyldiacylglycerol synthase [].; GO: 0016758 transferase activity, transferring hexosyl groups, 0009247 glycolipid biosynthetic process
Probab=67.93 E-value=14 Score=30.98 Aligned_cols=24 Identities=21% Similarity=0.192 Sum_probs=17.4
Q ss_pred ChHHHHHHHHHHHh-CCCeEEEEeC
Q 046167 21 HINPMLQLGTILHS-KGFSITVVHT 44 (424)
Q Consensus 21 H~~p~~~la~~L~~-~Gh~V~~~~~ 44 (424)
|.....+|+++|.+ +|.++.+...
T Consensus 1 H~~aA~Al~eal~~~~~~~~~v~v~ 25 (169)
T PF06925_consen 1 HNSAARALAEALERRRGPDAEVEVV 25 (169)
T ss_pred CHHHHHHHHHHHHhhcCCCCEEEEE
Confidence 77788999999988 5655554443
No 223
>PRK12342 hypothetical protein; Provisional
Probab=67.71 E-value=9.5 Score=34.45 Aligned_cols=92 Identities=10% Similarity=0.041 Sum_probs=51.5
Q ss_pred HHHHHHHHHhCCCeEEEEeCCCCCC--C---C-CCCCCc-eEEeCCCC-CCCCccccccHHHHHHHHHHhchhHHHHHHH
Q 046167 25 MLQLGTILHSKGFSITVVHTQFNSP--N---P-SNHPEF-EFQSIPDG-LMDVNISARNLVDSILLLNENCREPFRNWLV 96 (424)
Q Consensus 25 ~~~la~~L~~~Gh~V~~~~~~~~~~--~---~-~~~~g~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (424)
.+..|-+|++.|.+|++++-.+... . . ....|. +-+.+.+. +. ..+... ....+...++
T Consensus 40 AlE~AlrLk~~g~~Vtvls~Gp~~a~~~~l~r~alamGaD~avli~d~~~~-----g~D~~a--------ta~~La~~i~ 106 (254)
T PRK12342 40 AIEAASQLATDGDEIAALTVGGSLLQNSKVRKDVLSRGPHSLYLVQDAQLE-----HALPLD--------TAKALAAAIE 106 (254)
T ss_pred HHHHHHHHhhcCCEEEEEEeCCChHhHHHHHHHHHHcCCCEEEEEecCccC-----CCCHHH--------HHHHHHHHHH
Confidence 4567888887799999999864331 1 0 111121 11112111 10 011111 1122333455
Q ss_pred HHHhhcCCCCCceEEEecCcc------chHHHHHHHhCCceEEEecc
Q 046167 97 QMIKEQQPGDEIVCIIYDEVM------YFAEASASQLNVQSIILRTS 137 (424)
Q Consensus 97 ~~~~~~~~~~~pDlvi~d~~~------~~~~~~A~~lgiP~v~~~~~ 137 (424)
.+ +||||++...+ ..++.+|+.||+|+++....
T Consensus 107 ~~--------~~DLVl~G~~s~D~~tgqvg~~lA~~Lg~P~vt~v~~ 145 (254)
T PRK12342 107 KI--------GFDLLLFGEGSGDLYAQQVGLLLGELLQLPVINAVSK 145 (254)
T ss_pred Hh--------CCCEEEEcCCcccCCCCCHHHHHHHHhCCCcEeeEEE
Confidence 54 79999996444 55789999999999986543
No 224
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=67.63 E-value=30 Score=33.65 Aligned_cols=38 Identities=18% Similarity=0.260 Sum_probs=34.5
Q ss_pred CceEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCC
Q 046167 8 RRRVVLVPSPHQGHINPMLQLGTILHSKGFSITVVHTQ 45 (424)
Q Consensus 8 ~~ril~~~~~~~GH~~p~~~la~~L~~~Gh~V~~~~~~ 45 (424)
|-.|+++-.=|.|-..-.-.||+.|+++|+.|.+++.+
T Consensus 100 P~vImmvGLQGsGKTTt~~KLA~~lkk~~~kvllVaaD 137 (451)
T COG0541 100 PTVILMVGLQGSGKTTTAGKLAKYLKKKGKKVLLVAAD 137 (451)
T ss_pred CeEEEEEeccCCChHhHHHHHHHHHHHcCCceEEEecc
Confidence 45678888889999999999999999999999999987
No 225
>TIGR00682 lpxK tetraacyldisaccharide 4'-kinase. Also called lipid-A 4'-kinase. This essential gene encodes an enzyme in the pathway of lipid A biosynthesis in Gram-negative organisms. A single copy of this protein is found in Gram-negative bacteria. PSI-BLAST converges on this set of apparent orthologs without identifying any other homologs.
Probab=67.35 E-value=13 Score=34.73 Aligned_cols=34 Identities=18% Similarity=0.373 Sum_probs=28.3
Q ss_pred cCCCccChHHHHHHHHHHHhCCCeEEEEeCCCCC
Q 046167 15 PSPHQGHINPMLQLGTILHSKGFSITVVHTQFNS 48 (424)
Q Consensus 15 ~~~~~GH~~p~~~la~~L~~~Gh~V~~~~~~~~~ 48 (424)
+.||+|-.-=.+.|++.|+++|++|.+++..+..
T Consensus 37 tvGGTGKTP~v~~La~~l~~~G~~~~IlSRGYg~ 70 (311)
T TIGR00682 37 SVGGTGKTPVVVWLAELLKDRGLRVGVLSRGYGS 70 (311)
T ss_pred ccCCcChHHHHHHHHHHHHHCCCEEEEECCCCCC
Confidence 3678888666778999999999999999986554
No 226
>TIGR01283 nifE nitrogenase molybdenum-iron cofactor biosynthesis protein NifE. This protein is part of the NifEN complex involved in biosynthesis of the molybdenum-iron cofactor used by the homologous NifDK complex of nitrogenase. In a few species, the protein is found as a NifEN fusion protein.
Probab=67.25 E-value=51 Score=32.74 Aligned_cols=26 Identities=12% Similarity=0.013 Sum_probs=20.9
Q ss_pred CceEEEecCccchHHHHHHHhCCceEEEe
Q 046167 107 EIVCIIYDEVMYFAEASASQLNVQSIILR 135 (424)
Q Consensus 107 ~pDlvi~d~~~~~~~~~A~~lgiP~v~~~ 135 (424)
+||++|... ....+|+++|||++.+.
T Consensus 395 ~pDl~ig~~---~~~~~a~k~giP~i~~~ 420 (456)
T TIGR01283 395 KADLLIAGG---KERYTALKLGIPFCDIN 420 (456)
T ss_pred CCCEEEEcc---chHHHHHhcCCCEEEcc
Confidence 899999873 44678889999998753
No 227
>TIGR01285 nifN nitrogenase molybdenum-iron cofactor biosynthesis protein NifN. This protein forms a complex with NifE, and appears as a NifEN in some species. NifEN is a required for producing the molybdenum-iron cofactor of molybdenum-requiring nitrogenases. NifN is closely related to the nitrogenase molybdenum-iron protein beta chain NifK. This model describes most examples of NifN but excludes some cases, such as the putative NifN of Chlorobium tepidum, for which a separate model may be created.
Probab=67.25 E-value=35 Score=33.67 Aligned_cols=87 Identities=17% Similarity=0.229 Sum_probs=52.6
Q ss_pred CceEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCCCCCCCCCCCCCceEEeCCCCCCCCccccccHHHHHHHHHHhc
Q 046167 8 RRRVVLVPSPHQGHINPMLQLGTILHSKGFSITVVHTQFNSPNPSNHPEFEFQSIPDGLMDVNISARNLVDSILLLNENC 87 (424)
Q Consensus 8 ~~ril~~~~~~~GH~~p~~~la~~L~~~Gh~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (424)
.+|+.+...+ .....+++.|.+.|-+|..+......+... .++ .+.....+..
T Consensus 311 Gkrvai~~~~-----~~~~~l~~~l~elGm~v~~~~~~~~~~~~~--------~~~----~~~~~~~D~~---------- 363 (432)
T TIGR01285 311 GKKVAIAAEP-----DLLAAWATFFTSMGAQIVAAVTTTGSPLLQ--------KLP----VETVVIGDLE---------- 363 (432)
T ss_pred CCEEEEEcCH-----HHHHHHHHHHHHCCCEEEEEEeCCCCHHHH--------hCC----cCcEEeCCHH----------
Confidence 3677776532 467889999999999998888753322110 011 1000001110
Q ss_pred hhHHHHHHHHHHhhcCCCCCceEEEecCccchHHHHHHHhCCceEEE
Q 046167 88 REPFRNWLVQMIKEQQPGDEIVCIIYDEVMYFAEASASQLNVQSIIL 134 (424)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~pDlvi~d~~~~~~~~~A~~lgiP~v~~ 134 (424)
.+.+.++.. +||++|.+. ....+|+++|||++.+
T Consensus 364 --~l~~~i~~~--------~~dliig~s---~~k~~A~~l~ip~ir~ 397 (432)
T TIGR01285 364 --DLEDLACAA--------GADLLITNS---HGRALAQRLALPLVRA 397 (432)
T ss_pred --HHHHHHhhc--------CCCEEEECc---chHHHHHHcCCCEEEe
Confidence 112233333 899999886 4467999999999965
No 228
>cd02070 corrinoid_protein_B12-BD B12 binding domain of corrinoid proteins. A family of small methanogenic corrinoid proteins that bind methyl-Co(III) 5-hydroxybenzimidazolylcobamide as a cofactor. They play a role on the methanogenesis from trimethylamine, dimethylamine or monomethylamine, which is initiated by a series of corrinoid-dependent methyltransferases.
Probab=67.24 E-value=10 Score=32.87 Aligned_cols=38 Identities=18% Similarity=0.214 Sum_probs=34.8
Q ss_pred CceEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCC
Q 046167 8 RRRVVLVPSPHQGHINPMLQLGTILHSKGFSITVVHTQ 45 (424)
Q Consensus 8 ~~ril~~~~~~~GH~~p~~~la~~L~~~Gh~V~~~~~~ 45 (424)
+.|+++.+.++..|-....-++..|.+.|++|++++..
T Consensus 82 ~~~vl~~~~~gd~H~lG~~~v~~~l~~~G~~vi~lG~~ 119 (201)
T cd02070 82 KGKVVIGTVEGDIHDIGKNLVATMLEANGFEVIDLGRD 119 (201)
T ss_pred CCeEEEEecCCccchHHHHHHHHHHHHCCCEEEECCCC
Confidence 46999999999999999999999999999999988764
No 229
>PRK07952 DNA replication protein DnaC; Validated
Probab=66.73 E-value=32 Score=30.95 Aligned_cols=35 Identities=14% Similarity=0.234 Sum_probs=28.8
Q ss_pred eEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeC
Q 046167 10 RVVLVPSPHQGHINPMLQLGTILHSKGFSITVVHT 44 (424)
Q Consensus 10 ril~~~~~~~GH~~p~~~la~~L~~~Gh~V~~~~~ 44 (424)
-+++...+|.|-..=..++|.+|.++|+.|.+++.
T Consensus 101 ~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~it~ 135 (244)
T PRK07952 101 SFIFSGKPGTGKNHLAAAICNELLLRGKSVLIITV 135 (244)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEH
Confidence 46666677888888888999999999999988854
No 230
>PRK06179 short chain dehydrogenase; Provisional
Probab=66.49 E-value=39 Score=30.47 Aligned_cols=33 Identities=18% Similarity=0.207 Sum_probs=23.7
Q ss_pred eEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCC
Q 046167 10 RVVLVPSPHQGHINPMLQLGTILHSKGFSITVVHTQ 45 (424)
Q Consensus 10 ril~~~~~~~GH~~p~~~la~~L~~~Gh~V~~~~~~ 45 (424)
+.+++++++ |.+ -.+++++|.++|++|+..+..
T Consensus 5 ~~vlVtGas-g~i--G~~~a~~l~~~g~~V~~~~r~ 37 (270)
T PRK06179 5 KVALVTGAS-SGI--GRATAEKLARAGYRVFGTSRN 37 (270)
T ss_pred CEEEEecCC-CHH--HHHHHHHHHHCCCEEEEEeCC
Confidence 445555543 433 358899999999999988764
No 231
>PRK08057 cobalt-precorrin-6x reductase; Reviewed
Probab=65.59 E-value=69 Score=28.84 Aligned_cols=32 Identities=19% Similarity=0.344 Sum_probs=24.4
Q ss_pred ceEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCC
Q 046167 9 RRVVLVPSPHQGHINPMLQLGTILHSKGFSITVVHTQ 45 (424)
Q Consensus 9 ~ril~~~~~~~GH~~p~~~la~~L~~~Gh~V~~~~~~ 45 (424)
++|+++.+-+.|. .||+.|.++|+.|.+.+..
T Consensus 3 ~~IlvlgGT~egr-----~la~~L~~~g~~v~~Svat 34 (248)
T PRK08057 3 PRILLLGGTSEAR-----ALARALAAAGVDIVLSLAG 34 (248)
T ss_pred ceEEEEechHHHH-----HHHHHHHhCCCeEEEEEcc
Confidence 3788877655554 7899999999988877663
No 232
>PRK13768 GTPase; Provisional
Probab=65.05 E-value=21 Score=32.32 Aligned_cols=37 Identities=16% Similarity=0.307 Sum_probs=31.4
Q ss_pred eEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCCC
Q 046167 10 RVVLVPSPHQGHINPMLQLGTILHSKGFSITVVHTQF 46 (424)
Q Consensus 10 ril~~~~~~~GH~~p~~~la~~L~~~Gh~V~~~~~~~ 46 (424)
.+++...+|.|-..=...++..|..+|++|.++..++
T Consensus 4 ~i~v~G~~G~GKTt~~~~~~~~l~~~g~~v~~i~~D~ 40 (253)
T PRK13768 4 IVFFLGTAGSGKTTLTKALSDWLEEQGYDVAIVNLDP 40 (253)
T ss_pred EEEEECCCCccHHHHHHHHHHHHHhcCCceEEEECCC
Confidence 5677777788988888999999999999999997754
No 233
>PRK05632 phosphate acetyltransferase; Reviewed
Probab=65.05 E-value=1.1e+02 Score=32.39 Aligned_cols=102 Identities=16% Similarity=0.236 Sum_probs=60.0
Q ss_pred eEEEEcCC-CccChHHHHHHHHHHHhCCCeEEEEeCCCCCCCCCCCCCceEEeCCCCCCCCccccccHHHHHHHHHH-hc
Q 046167 10 RVVLVPSP-HQGHINPMLQLGTILHSKGFSITVVHTQFNSPNPSNHPEFEFQSIPDGLMDVNISARNLVDSILLLNE-NC 87 (424)
Q Consensus 10 ril~~~~~-~~GH~~p~~~la~~L~~~Gh~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 87 (424)
.|++.+-. +.|-..-.+.|++.|+++|.+|.++=+-.. + | + ........+.. ..
T Consensus 4 ~l~I~~T~t~~GKT~vslgL~~~L~~~G~~Vg~fKPi~~--------~------p--~--------~~~~~~~~~~~~~~ 59 (684)
T PRK05632 4 SIYLAPTGTGVGLTSVSLGLMRALERKGVKVGFFKPIAQ--------P------P--L--------TMSEVEALLASGQL 59 (684)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEeCCccc--------C------C--C--------CHHHHHHHHhccCC
Confidence 56666544 568999999999999999999999854211 1 1 0 00000011100 11
Q ss_pred hhHHHHHHHHHHhhcCCCCCceEEEecCccc---------hHHHHHHHhCCceEEEecch
Q 046167 88 REPFRNWLVQMIKEQQPGDEIVCIIYDEVMY---------FAEASASQLNVQSIILRTSG 138 (424)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~pDlvi~d~~~~---------~~~~~A~~lgiP~v~~~~~~ 138 (424)
...+..+++.+.+.. . +.|++|.|.... ....+|+.++.|++.+....
T Consensus 60 ~~~~~~I~~~~~~l~-~--~~D~VLIEGa~~~~~~~~~~~~na~iA~~L~~pVILV~~~~ 116 (684)
T PRK05632 60 DELLEEIVARYHALA-K--DCDVVLVEGLDPTRKHPFEFSLNAEIAKNLGAEVVLVSSGG 116 (684)
T ss_pred hHHHHHHHHHHHHhc-c--CCCEEEEeCcCCCCcCcccCchHHHHHHHhCCCEEEEECCC
Confidence 122233444443321 1 799999775431 23578999999999887653
No 234
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=64.48 E-value=11 Score=29.59 Aligned_cols=36 Identities=17% Similarity=0.306 Sum_probs=33.5
Q ss_pred eEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCC
Q 046167 10 RVVLVPSPHQGHINPMLQLGTILHSKGFSITVVHTQ 45 (424)
Q Consensus 10 ril~~~~~~~GH~~p~~~la~~L~~~Gh~V~~~~~~ 45 (424)
|+++.+.++..|-....-++.-|...|++|.+....
T Consensus 1 ~vv~~~~~gd~H~lG~~~~~~~l~~~G~~vi~lG~~ 36 (122)
T cd02071 1 RILVAKPGLDGHDRGAKVIARALRDAGFEVIYTGLR 36 (122)
T ss_pred CEEEEecCCChhHHHHHHHHHHHHHCCCEEEECCCC
Confidence 689999999999999999999999999999999874
No 235
>PRK13789 phosphoribosylamine--glycine ligase; Provisional
Probab=64.35 E-value=20 Score=35.25 Aligned_cols=33 Identities=12% Similarity=0.129 Sum_probs=26.6
Q ss_pred CceEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCC
Q 046167 8 RRRVVLVPSPHQGHINPMLQLGTILHSKGFSITVVHTQ 45 (424)
Q Consensus 8 ~~ril~~~~~~~GH~~p~~~la~~L~~~Gh~V~~~~~~ 45 (424)
.||||++-.+++-| +|+.+|++.++-..+++.+
T Consensus 4 ~~kvLviG~g~reh-----al~~~~~~~~~~~~~~~~p 36 (426)
T PRK13789 4 KLKVLLIGSGGRES-----AIAFALRKSNLLSELKVFP 36 (426)
T ss_pred CcEEEEECCCHHHH-----HHHHHHHhCCCCCEEEEEC
Confidence 38999999999888 7999999998655555554
No 236
>COG2861 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=64.26 E-value=77 Score=28.19 Aligned_cols=36 Identities=17% Similarity=0.115 Sum_probs=26.3
Q ss_pred HHHHHHHHHhhcCCCCCceEEEecCcc---chHHHHHHHhCCceEE
Q 046167 91 FRNWLVQMIKEQQPGDEIVCIIYDEVM---YFAEASASQLNVQSII 133 (424)
Q Consensus 91 ~~~~~~~~~~~~~~~~~pDlvi~d~~~---~~~~~~A~~lgiP~v~ 133 (424)
++.+++.+. +-++.+.|..+ .-+..+|+..|||++.
T Consensus 140 M~~~m~~Lk-------~r~l~flDs~T~a~S~a~~iAk~~gVp~~~ 178 (250)
T COG2861 140 MEKLMEALK-------ERGLYFLDSGTIANSLAGKIAKEIGVPVIK 178 (250)
T ss_pred HHHHHHHHH-------HCCeEEEcccccccchhhhhHhhcCCceee
Confidence 334555554 68999999877 3445789999999996
No 237
>TIGR02852 spore_dpaB dipicolinic acid synthetase, B subunit. Members of this family represent the B subunit of dipicolinic acid synthetase, an enzyme that synthesizes a small molecule that appears to confer heat stability to bacterial endospores such as those of Bacillus subtilis. The A and B subunits are together in what was originally designated the spoVF locus for stage V of endospore formation.
Probab=64.01 E-value=9.4 Score=32.67 Aligned_cols=36 Identities=11% Similarity=0.148 Sum_probs=30.0
Q ss_pred eEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCC
Q 046167 10 RVVLVPSPHQGHINPMLQLGTILHSKGFSITVVHTQ 45 (424)
Q Consensus 10 ril~~~~~~~GH~~p~~~la~~L~~~Gh~V~~~~~~ 45 (424)
||++.-.|+.|=+.-.+.+.++|++.|++|+++.++
T Consensus 2 ~I~lgITGs~~a~~a~~~ll~~L~~~g~~V~vI~S~ 37 (187)
T TIGR02852 2 RIGFGLTGSHCTLEAVMPQLEKLVDEGAEVTPIVSE 37 (187)
T ss_pred EEEEEEecHHHHHHHHHHHHHHHHhCcCEEEEEEch
Confidence 677776767777666679999999999999999985
No 238
>PRK10867 signal recognition particle protein; Provisional
Probab=63.25 E-value=43 Score=32.93 Aligned_cols=38 Identities=16% Similarity=0.187 Sum_probs=33.0
Q ss_pred CceEEEEcCCCccChHHHHHHHHHHHhC-CCeEEEEeCC
Q 046167 8 RRRVVLVPSPHQGHINPMLQLGTILHSK-GFSITVVHTQ 45 (424)
Q Consensus 8 ~~ril~~~~~~~GH~~p~~~la~~L~~~-Gh~V~~~~~~ 45 (424)
+..|+++..+|.|-..-...||..|+++ |+.|.+++.+
T Consensus 100 p~vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D 138 (433)
T PRK10867 100 PTVIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAAD 138 (433)
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEcc
Confidence 3456677777999999999999999999 9999999987
No 239
>cd03466 Nitrogenase_NifN_2 Nitrogenase_nifN_2: A subgroup of the NifN subunit of the NifEN complex: NifN forms an alpha2beta2 tetramer with NifE. NifN and nifE are structurally homologous to nitrogenase MoFe protein beta and alpha subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The nifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this nifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco). This group also contains the Clostidium fused NifN-NifB protein.
Probab=63.20 E-value=27 Score=34.35 Aligned_cols=26 Identities=19% Similarity=0.307 Sum_probs=22.0
Q ss_pred CceEEEecCccchHHHHHHHhCCceEEEe
Q 046167 107 EIVCIIYDEVMYFAEASASQLNVQSIILR 135 (424)
Q Consensus 107 ~pDlvi~d~~~~~~~~~A~~lgiP~v~~~ 135 (424)
+||++|.+. ....+|+++|||++.+.
T Consensus 372 ~~dliiG~s---~~~~~a~~~~ip~~~~~ 397 (429)
T cd03466 372 KIDVLIGNS---YGRRIAEKLGIPLIRIG 397 (429)
T ss_pred CCCEEEECc---hhHHHHHHcCCCEEEec
Confidence 899999996 35689999999998763
No 240
>TIGR00379 cobB cobyrinic acid a,c-diamide synthase. This model describes cobyrinic acid a,c-diamide synthase, the cobB (cbiA in Salmonella) protein of cobalamin biosynthesis. It is responsible for the amidation of carboxylic groups at positions A and C of either cobyrinic acid or hydrogenobrynic acid. NH(2) groups are provided by glutamine and one molecule of ATP hydrogenolyzed for each amidation.
Probab=62.90 E-value=42 Score=33.25 Aligned_cols=106 Identities=12% Similarity=0.108 Sum_probs=59.0
Q ss_pred EEEEc-CCCccChHHHHHHHHHHHhCCCeEEEEeCCCCCCCCCCCCCceEEeCCCCCCCCccccccHHHHHHHHHHhchh
Q 046167 11 VVLVP-SPHQGHINPMLQLGTILHSKGFSITVVHTQFNSPNPSNHPEFEFQSIPDGLMDVNISARNLVDSILLLNENCRE 89 (424)
Q Consensus 11 il~~~-~~~~GH~~p~~~la~~L~~~Gh~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (424)
|++.. ..+.|-..-...|+++|+++|++|..+-+...... +.+ ...-.+.+. ..+..+. .-..
T Consensus 2 ~~I~gT~t~vGKT~vt~~L~~~L~~~G~~V~~fK~g~d~~D----~~~--~~~~~g~~~---------~~ld~~~-~~~~ 65 (449)
T TIGR00379 2 VVIAGTSSGVGKTTISTGIMKALSRRKLRVQPFKVGPDYID----PMF--HTQATGRPS---------RNLDSFF-MSEA 65 (449)
T ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHCCCceeEEccCCCCCC----HHH--HHHHhCCch---------hhCCccc-CCHH
Confidence 44553 34568899999999999999999999854211000 000 000000000 0000000 1122
Q ss_pred HHHHHHHHHHhhcCCCCCceEEEecCc---c---------chHHHHHHHhCCceEEEecch
Q 046167 90 PFRNWLVQMIKEQQPGDEIVCIIYDEV---M---------YFAEASASQLNVQSIILRTSG 138 (424)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~pDlvi~d~~---~---------~~~~~~A~~lgiP~v~~~~~~ 138 (424)
.+.+.+.++.+ +.|++|.+.. + .....+|+.++.|++.+....
T Consensus 66 ~i~~~~~~~~~------~~D~viVEGagGl~~g~~p~~~~~s~adlAk~l~~pVILV~~~~ 120 (449)
T TIGR00379 66 QIQECFHRHSK------GTDYSIIEGVRGLYDGISAITDYGSTASVAKALDAPIVLVMNCQ 120 (449)
T ss_pred HHHHHHHHhcc------cCCEEEEecCCccccCCCCCCCCccHHHHHHHhCCCEEEEECCc
Confidence 23333444322 6899996643 1 236689999999999998765
No 241
>PRK06835 DNA replication protein DnaC; Validated
Probab=62.61 E-value=39 Score=31.94 Aligned_cols=36 Identities=11% Similarity=0.084 Sum_probs=31.0
Q ss_pred ceEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeC
Q 046167 9 RRVVLVPSPHQGHINPMLQLGTILHSKGFSITVVHT 44 (424)
Q Consensus 9 ~ril~~~~~~~GH~~p~~~la~~L~~~Gh~V~~~~~ 44 (424)
..++|+..+|.|-..=..++|++|.++|+.|.+++.
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t~ 219 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRTA 219 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEEH
Confidence 467777777888888888999999999999999877
No 242
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=62.58 E-value=31 Score=33.77 Aligned_cols=38 Identities=18% Similarity=0.262 Sum_probs=32.9
Q ss_pred ceEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCCC
Q 046167 9 RRVVLVPSPHQGHINPMLQLGTILHSKGFSITVVHTQF 46 (424)
Q Consensus 9 ~ril~~~~~~~GH~~p~~~la~~L~~~Gh~V~~~~~~~ 46 (424)
..|+|+..+|.|-..-...||..|+++|++|.+++.+.
T Consensus 101 ~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~ 138 (429)
T TIGR01425 101 NVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADT 138 (429)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcc
Confidence 45677777799999999999999999999999999863
No 243
>PF00731 AIRC: AIR carboxylase; InterPro: IPR000031 Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. PurK, N5-carboxyaminoimidazole ribonucleotide (N5_CAIR) synthetase, catalyzes the conversion of 5-aminoimidazole ribonucleotide (AIR), ATP, and bicarbonate to N5-CAIR, ADP, and Pi. PurE converts N5-CAIR to CAIR, the sixth step of de novo purine biosynthesis. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP. Some members of this family contain two copies of this domain []. The crystal structure of PurE indicates a unique quaternary structure that confirms the octameric nature of the enzyme [].; GO: 0004638 phosphoribosylaminoimidazole carboxylase activity, 0006189 'de novo' IMP biosynthetic process; PDB: 3TRH_O 2YWX_A 2NSL_A 1D7A_A 2NSJ_A 1QCZ_A 2ATE_A 2NSH_A 3RG8_C 3RGG_D ....
Probab=62.26 E-value=88 Score=25.72 Aligned_cols=137 Identities=17% Similarity=0.165 Sum_probs=70.9
Q ss_pred EEEEEeCCcccCCHHHHHHHHHHHHhCCCCeEEEEcCCCCCCCcccccCchhHHHHhcCCCceeeecchhhhhccccccc
Q 046167 239 VIYVSLGSVASMDKKELEEMAWGLVNSKQPFLWVIRPRTNNAPEGIELLPKVLAEDVQENGYIVKWAPQKEVLSHVAVGG 318 (424)
Q Consensus 239 ~I~vs~Gs~~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~nv~v~~~ip~~~ll~~~~~~~ 318 (424)
.|-|-.||.. +....+++...+++.+..+-+.+.+- -..|+.+.+. +.. +.+-.++.
T Consensus 2 ~V~Ii~gs~S--D~~~~~~a~~~L~~~gi~~~~~V~sa--------HR~p~~l~~~----------~~~---~~~~~~~v 58 (150)
T PF00731_consen 2 KVAIIMGSTS--DLPIAEEAAKTLEEFGIPYEVRVASA--------HRTPERLLEF----------VKE---YEARGADV 58 (150)
T ss_dssp EEEEEESSGG--GHHHHHHHHHHHHHTT-EEEEEE--T--------TTSHHHHHHH----------HHH---TTTTTESE
T ss_pred eEEEEeCCHH--HHHHHHHHHHHHHHcCCCEEEEEEec--------cCCHHHHHHH----------HHH---hccCCCEE
Confidence 4556667777 68888889999999886655554322 1234443211 111 11112233
Q ss_pred cccccch----hhHHHhhhcCCceeecCcccchhhHH----HHHHhhhhcceecCc---ccchHHHHHHHHHHhcccchH
Q 046167 319 FWSHCGW----NSTLESICEGVPMICMPFFEDQKVNA----RYLSHVWGVGLELEH---ELERGAVEKAVRKLTVDKEGE 387 (424)
Q Consensus 319 ~i~hgG~----~t~~eal~~GvP~v~~P~~~DQ~~na----~~~~~~~G~g~~~~~---~~~~~~L~~ai~~ll~~~~~~ 387 (424)
||.=+|. .++..++ .-+|+|.+|....+.... ..++---|+++..-. ..++..++-.|-.+ .| +
T Consensus 59 iIa~AG~~a~Lpgvva~~-t~~PVIgvP~~~~~~~g~d~l~S~vqMp~g~pvatv~i~~~~nAA~~A~~ILa~-~d---~ 133 (150)
T PF00731_consen 59 IIAVAGMSAALPGVVASL-TTLPVIGVPVSSGYLGGLDSLLSIVQMPSGVPVATVGINNGFNAALLAARILAL-KD---P 133 (150)
T ss_dssp EEEEEESS--HHHHHHHH-SSS-EEEEEE-STTTTTHHHHHHHHT--TTS--EE-SSTHHHHHHHHHHHHHHT-T----H
T ss_pred EEEECCCcccchhhheec-cCCCEEEeecCcccccCcccHHHHHhccCCCCceEEEccCchHHHHHHHHHHhc-CC---H
Confidence 8887774 3444444 489999999876643222 222210144433222 23444444444433 44 6
Q ss_pred HHHHHHHHHHHHHHHH
Q 046167 388 FLRQRAAQLKEEVELS 403 (424)
Q Consensus 388 ~~~~~a~~l~~~~~~~ 403 (424)
.++++.+..+++.++.
T Consensus 134 ~l~~kl~~~~~~~~~~ 149 (150)
T PF00731_consen 134 ELREKLRAYREKMKEK 149 (150)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcc
Confidence 8899998888887653
No 244
>KOG1209 consensus 1-Acyl dihydroxyacetone phosphate reductase and related dehydrogenases [Secondary metabolites biosynthesis, transport and catabolism]
Probab=62.13 E-value=11 Score=32.83 Aligned_cols=38 Identities=18% Similarity=0.257 Sum_probs=26.0
Q ss_pred CcccCCCCceEEEEcC--CCccChHHHHHHHHHHHhCCCeEEEEeC
Q 046167 1 MEEQGQRRRRVVLVPS--PHQGHINPMLQLGTILHSKGFSITVVHT 44 (424)
Q Consensus 1 ~~~m~~~~~ril~~~~--~~~GH~~p~~~la~~L~~~Gh~V~~~~~ 44 (424)
|+-|+++ ++|++... ||.|| +||++|.+.|+.|.-...
T Consensus 1 ~e~~~~~-k~VlItgcs~GGIG~-----ala~ef~~~G~~V~AtaR 40 (289)
T KOG1209|consen 1 SELQSQP-KKVLITGCSSGGIGY-----ALAKEFARNGYLVYATAR 40 (289)
T ss_pred CCcccCC-CeEEEeecCCcchhH-----HHHHHHHhCCeEEEEEcc
Confidence 4456655 56666543 35566 799999999999975544
No 245
>COG0859 RfaF ADP-heptose:LPS heptosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=62.10 E-value=26 Score=33.10 Aligned_cols=98 Identities=12% Similarity=0.159 Sum_probs=57.5
Q ss_pred ceEEEEcCCCcc-----ChHHHHHHHHHHHhCCCeEEEEeCCCCCCCCC-CC-CCceEEeCCCCCCCCccccccHHHHHH
Q 046167 9 RRVVLVPSPHQG-----HINPMLQLGTILHSKGFSITVVHTQFNSPNPS-NH-PEFEFQSIPDGLMDVNISARNLVDSIL 81 (424)
Q Consensus 9 ~ril~~~~~~~G-----H~~p~~~la~~L~~~Gh~V~~~~~~~~~~~~~-~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (424)
..|+|.++.+.| -..-+..|++.|.++|.+|.+..++ ...... .. .++.... .
T Consensus 176 ~~i~i~pg~s~~~~K~wp~e~~~~l~~~l~~~~~~Vvl~g~~-~e~e~~~~i~~~~~~~~----------------~--- 235 (334)
T COG0859 176 PYIVINPGASRGSAKRWPLEHYAELAELLIAKGYQVVLFGGP-DEEERAEEIAKGLPNAV----------------I--- 235 (334)
T ss_pred CeEEEeccccccccCCCCHHHHHHHHHHHHHCCCEEEEecCh-HHHHHHHHHHHhcCCcc----------------c---
Confidence 467777762332 1235788999999999888888774 111100 00 0000000 0
Q ss_pred HHHHhchhHHHHHHHHHHhhcCCCCCceEEEecCccchHHHHHHHhCCceEEEecch
Q 046167 82 LLNENCREPFRNWLVQMIKEQQPGDEIVCIIYDEVMYFAEASASQLNVQSIILRTSG 138 (424)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~pDlvi~d~~~~~~~~~A~~lgiP~v~~~~~~ 138 (424)
-.....+.++..-+. ..|++|+.- .+..++|..+|.|+|.+...+
T Consensus 236 ---l~~k~sL~e~~~li~-------~a~l~I~~D--Sg~~HlAaA~~~P~I~iyg~t 280 (334)
T COG0859 236 ---LAGKTSLEELAALIA-------GADLVIGND--SGPMHLAAALGTPTIALYGPT 280 (334)
T ss_pred ---cCCCCCHHHHHHHHh-------cCCEEEccC--ChHHHHHHHcCCCEEEEECCC
Confidence 012233444444443 789988764 567789999999999986553
No 246
>PRK13234 nifH nitrogenase reductase; Reviewed
Probab=62.02 E-value=15 Score=34.11 Aligned_cols=38 Identities=13% Similarity=0.065 Sum_probs=32.0
Q ss_pred eEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCCCC
Q 046167 10 RVVLVPSPHQGHINPMLQLGTILHSKGFSITVVHTQFN 47 (424)
Q Consensus 10 ril~~~~~~~GH~~p~~~la~~L~~~Gh~V~~~~~~~~ 47 (424)
+|.|..-||-|-..-...||..|+++|++|.++-.++.
T Consensus 6 ~iai~~KGGvGKTt~~~nLa~~la~~g~kVLliD~D~q 43 (295)
T PRK13234 6 QIAFYGKGGIGKSTTSQNTLAALVEMGQKILIVGCDPK 43 (295)
T ss_pred EEEEECCCCccHHHHHHHHHHHHHHCCCeEEEEecccc
Confidence 56666677889999999999999999999999966533
No 247
>PF02702 KdpD: Osmosensitive K+ channel His kinase sensor domain; InterPro: IPR003852 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Signal transducing histidine kinases are the key elements in two-component signal transduction systems, which control complex processes such as the initiation of development in microorganisms [, ]. Examples of histidine kinases are EnvZ, which plays a central role in osmoregulation [], and CheA, which plays a central role in the chemotaxis system []. Histidine kinases usually have an N-terminal ligand-binding domain and a C-terminal kinase domain, but other domains may also be present. The kinase domain is responsible for the autophosphorylation of the histidine with ATP, the phosphotransfer from the kinase to an aspartate of the response regulator, and (with bifunctional enzymes) the phosphotransfer from aspartyl phosphate back to ADP or to water []. The kinase core has a unique fold, distinct from that of the Ser/Thr/Tyr kinase superfamily. HKs can be roughly divided into two classes: orthodox and hybrid kinases [, ]. Most orthodox HKs, typified by the Escherichia coli EnvZ protein, function as periplasmic membrane receptors and have a signal peptide and transmembrane segment(s) that separate the protein into a periplasmic N-terminal sensing domain and a highly conserved cytoplasmic C-terminal kinase core. Members of this family, however, have an integral membrane sensor domain. Not all orthodox kinases are membrane bound, e.g., the nitrogen regulatory kinase NtrB (GlnL) is a soluble cytoplasmic HK []. Hybrid kinases contain multiple phosphodonor and phosphoacceptor sites and use multi-step phospho-relay schemes instead of promoting a single phosphoryl transfer. In addition to the sensor domain and kinase core, they contain a CheY-like receiver domain and a His-containing phosphotransfer (HPt) domain. This entry represents the N-terminal domain found in KdpD sensor kinase proteins, which regulate the kdpFABC operon responsible for potassium transport []. The N-terminal domain forms part of the cytoplasmic region of the protein, which may be the sensor domain responsible for sensing turgor pressure [].; GO: 0000155 two-component sensor activity, 0004673 protein histidine kinase activity, 0000160 two-component signal transduction system (phosphorelay), 0016020 membrane; PDB: 2R8R_B.
Probab=61.98 E-value=13 Score=32.01 Aligned_cols=38 Identities=24% Similarity=0.375 Sum_probs=31.8
Q ss_pred CceEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCC
Q 046167 8 RRRVVLVPSPHQGHINPMLQLGTILHSKGFSITVVHTQ 45 (424)
Q Consensus 8 ~~ril~~~~~~~GH~~p~~~la~~L~~~Gh~V~~~~~~ 45 (424)
+.||++-..+|-|-.+.|+.=|++|+++|.+|.+..-.
T Consensus 5 rLkIflG~apGVGKTy~ML~ea~~l~~~G~DVViG~ve 42 (211)
T PF02702_consen 5 RLKIFLGAAPGVGKTYAMLQEAHRLKEQGVDVVIGYVE 42 (211)
T ss_dssp -EEEEEESSTTSSHHHHHHHHHHHHHHTT--EEEEE--
T ss_pred cEEEEEecCCCCCHHHHHHHHHHHHHHCCCCEEEEEec
Confidence 68999999999999999999999999999999997764
No 248
>CHL00072 chlL photochlorophyllide reductase subunit L
Probab=61.59 E-value=15 Score=34.02 Aligned_cols=39 Identities=8% Similarity=0.099 Sum_probs=35.0
Q ss_pred ceEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCCCC
Q 046167 9 RRVVLVPSPHQGHINPMLQLGTILHSKGFSITVVHTQFN 47 (424)
Q Consensus 9 ~ril~~~~~~~GH~~p~~~la~~L~~~Gh~V~~~~~~~~ 47 (424)
|||.++.-||-|-..-.+.||.+|+++|++|.++=.++.
T Consensus 1 m~ia~~gKGGVGKTTta~nLA~~La~~G~rVLlID~DpQ 39 (290)
T CHL00072 1 MKLAVYGKGGIGKSTTSCNISIALARRGKKVLQIGCDPK 39 (290)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEeccCC
Confidence 578999999999999999999999999999999977543
No 249
>COG4394 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=61.58 E-value=1.3e+02 Score=27.58 Aligned_cols=30 Identities=17% Similarity=0.285 Sum_probs=26.5
Q ss_pred CCCccChHHHHHHHHHHHh-CCCeEEEEeCC
Q 046167 16 SPHQGHINPMLQLGTILHS-KGFSITVVHTQ 45 (424)
Q Consensus 16 ~~~~GH~~p~~~la~~L~~-~Gh~V~~~~~~ 45 (424)
..-+|++--.-.||+.|++ .||+|.+.+-+
T Consensus 11 iDNyGDIGV~wRLARql~re~G~~VrLWvDd 41 (370)
T COG4394 11 IDNYGDIGVAWRLARQLKREHGWQVRLWVDD 41 (370)
T ss_pred hcccchhHHHHHHHHHHHHHhCceeeeecCC
Confidence 4578999999999999988 59999999875
No 250
>cd01968 Nitrogenase_NifE_I Nitrogenase_NifE_I: a subgroup of the NifE subunit of the NifEN complex: NifE forms an alpha2beta2 tetramer with NifN. NifE and NifN are structurally homologous to nitrogenase MoFe protein alpha and beta subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The NifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this NifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco).
Probab=61.47 E-value=70 Score=31.24 Aligned_cols=25 Identities=8% Similarity=-0.051 Sum_probs=20.6
Q ss_pred CceEEEecCccchHHHHHHHhCCceEEE
Q 046167 107 EIVCIIYDEVMYFAEASASQLNVQSIIL 134 (424)
Q Consensus 107 ~pDlvi~d~~~~~~~~~A~~lgiP~v~~ 134 (424)
+||++|.+. ....+|+++|||++..
T Consensus 356 ~pDl~ig~s---~~~~~a~~~gip~~~~ 380 (410)
T cd01968 356 KADLLVAGG---KERYLALKLGIPFCDI 380 (410)
T ss_pred CCCEEEECC---cchhhHHhcCCCEEEc
Confidence 899999985 3357899999999854
No 251
>PRK14478 nitrogenase molybdenum-cofactor biosynthesis protein NifE; Provisional
Probab=61.35 E-value=62 Score=32.37 Aligned_cols=32 Identities=16% Similarity=0.213 Sum_probs=23.8
Q ss_pred ceEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCC
Q 046167 9 RRVVLVPSPHQGHINPMLQLGTILHSKGFSITVVHTQ 45 (424)
Q Consensus 9 ~ril~~~~~~~GH~~p~~~la~~L~~~Gh~V~~~~~~ 45 (424)
+|++++..+ ...+++++.|.+.|-+|..+...
T Consensus 325 k~vaI~~~~-----~~~~~la~~l~ElGm~v~~~~~~ 356 (475)
T PRK14478 325 KRVLLYTGG-----VKSWSVVKALQELGMEVVGTSVK 356 (475)
T ss_pred CEEEEEcCC-----chHHHHHHHHHHCCCEEEEEEEE
Confidence 577775433 34568888899999999988774
No 252
>PRK01175 phosphoribosylformylglycinamidine synthase I; Provisional
Probab=61.16 E-value=77 Score=28.80 Aligned_cols=56 Identities=14% Similarity=0.195 Sum_probs=38.9
Q ss_pred ceEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCCCCCCCCCCCCCceEEeCCCCCC
Q 046167 9 RRVVLVPSPHQGHINPMLQLGTILHSKGFSITVVHTQFNSPNPSNHPEFEFQSIPDGLM 67 (424)
Q Consensus 9 ~ril~~~~~~~GH~~p~~~la~~L~~~Gh~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 67 (424)
+||+++.+++...-. .++.+|.+.|.+|.++..............+..+.+|.|+.
T Consensus 4 ~kvaVl~~pG~n~d~---e~~~Al~~aG~~v~~v~~~~~~~~~~~l~~~DgLvipGGfs 59 (261)
T PRK01175 4 IRVAVLRMEGTNCED---ETVKAFRRLGVEPEYVHINDLAAERKSVSDYDCLVIPGGFS 59 (261)
T ss_pred CEEEEEeCCCCCCHH---HHHHHHHHCCCcEEEEeeccccccccchhhCCEEEECCCCC
Confidence 589999998776443 55799999999999887632222222235788888887753
No 253
>KOG3339 consensus Predicted glycosyltransferase [General function prediction only]
Probab=60.85 E-value=36 Score=28.86 Aligned_cols=24 Identities=33% Similarity=0.344 Sum_probs=19.9
Q ss_pred EEEcCCCccChHHHHHHHHHHHhC
Q 046167 12 VLVPSPHQGHINPMLQLGTILHSK 35 (424)
Q Consensus 12 l~~~~~~~GH~~p~~~la~~L~~~ 35 (424)
.++-.|++||..-|+.|-+.|.++
T Consensus 41 ~lVvlGSGGHT~EMlrLl~~l~~~ 64 (211)
T KOG3339|consen 41 TLVVLGSGGHTGEMLRLLEALQDL 64 (211)
T ss_pred EEEEEcCCCcHHHHHHHHHHHHhh
Confidence 344567899999999999999776
No 254
>PRK12377 putative replication protein; Provisional
Probab=60.79 E-value=1.3e+02 Score=27.14 Aligned_cols=96 Identities=16% Similarity=0.198 Sum_probs=58.3
Q ss_pred eEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCCCCCCCCCCCCCceEEeCCCCCCCCccccccHHHHHHHHHHhchh
Q 046167 10 RVVLVPSPHQGHINPMLQLGTILHSKGFSITVVHTQFNSPNPSNHPEFEFQSIPDGLMDVNISARNLVDSILLLNENCRE 89 (424)
Q Consensus 10 ril~~~~~~~GH~~p~~~la~~L~~~Gh~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (424)
.++|+..+|.|=..=..++|++|.++|+.|.+++.+ .+...+...+.. ..
T Consensus 103 ~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~~~-----------------------------~l~~~l~~~~~~-~~ 152 (248)
T PRK12377 103 NFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVTVP-----------------------------DVMSRLHESYDN-GQ 152 (248)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEHH-----------------------------HHHHHHHHHHhc-cc
Confidence 466777778888888888899998889988777652 111212111111 11
Q ss_pred HHHHHHHHHHhhcCCCCCceEEEecCccc-----hHH-----HHHHHh--CCceEEEecchHHHH
Q 046167 90 PFRNWLVQMIKEQQPGDEIVCIIYDEVMY-----FAE-----ASASQL--NVQSIILRTSGAVTV 142 (424)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~pDlvi~d~~~~-----~~~-----~~A~~l--giP~v~~~~~~~~~~ 142 (424)
...+.++.+. +.||+|.|-+.. +.. .+-+++ +.|++++++......
T Consensus 153 ~~~~~l~~l~-------~~dLLiIDDlg~~~~s~~~~~~l~~ii~~R~~~~~ptiitSNl~~~~l 210 (248)
T PRK12377 153 SGEKFLQELC-------KVDLLVLDEIGIQRETKNEQVVLNQIIDRRTASMRSVGMLTNLNHEAM 210 (248)
T ss_pred hHHHHHHHhc-------CCCEEEEcCCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEcCCCHHHH
Confidence 1234556663 799999997631 111 333444 489998888765443
No 255
>cd02037 MRP-like MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily. Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions as a Na+/H+ antiporter.
Probab=60.67 E-value=37 Score=28.29 Aligned_cols=32 Identities=13% Similarity=0.229 Sum_probs=27.7
Q ss_pred EcCCCccChHHHHHHHHHHHhCCCeEEEEeCC
Q 046167 14 VPSPHQGHINPMLQLGTILHSKGFSITVVHTQ 45 (424)
Q Consensus 14 ~~~~~~GH~~p~~~la~~L~~~Gh~V~~~~~~ 45 (424)
.+-||.|-..-.+.||..|+++|++|.++=.+
T Consensus 6 s~kgG~GKTt~a~~LA~~la~~g~~vllvD~D 37 (169)
T cd02037 6 SGKGGVGKSTVAVNLALALAKLGYKVGLLDAD 37 (169)
T ss_pred cCCCcCChhHHHHHHHHHHHHcCCcEEEEeCC
Confidence 34567899999999999999999999999664
No 256
>PF04413 Glycos_transf_N: 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase); InterPro: IPR007507 This is a domain found in proteins that transfer activated sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. Proteins bearing this domain transfer UDP, ADP, GDP or CMP linked sugars. This region is flanked at the N terminus by a signal peptide and at the C terminus by a glycosyl transferase group 1 domain (IPR001296 from INTERPRO). The eukaryotic glycogen synthases may be distant members of this bacterial family [].; GO: 0005529 sugar binding, 0016740 transferase activity, 0005975 carbohydrate metabolic process; PDB: 2XCI_A 2XCU_B.
Probab=60.47 E-value=18 Score=30.92 Aligned_cols=98 Identities=13% Similarity=0.132 Sum_probs=47.8
Q ss_pred EEEEcCCCccChHHHHHHHHHHHhC--CCeEEEEeCCCC-CCCC-CC-CCCceEEeCCCCCCCCccccccHHHHHHHHHH
Q 046167 11 VVLVPSPHQGHINPMLQLGTILHSK--GFSITVVHTQFN-SPNP-SN-HPEFEFQSIPDGLMDVNISARNLVDSILLLNE 85 (424)
Q Consensus 11 il~~~~~~~GH~~p~~~la~~L~~~--Gh~V~~~~~~~~-~~~~-~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (424)
++-+-..+-|-+.-..+|+++|+++ |+.|.+-++... .+.. .. .+.+....+|-+
T Consensus 23 ~iWiHa~SvGE~~a~~~Li~~l~~~~p~~~illT~~T~tg~~~~~~~~~~~v~~~~~P~D-------------------- 82 (186)
T PF04413_consen 23 LIWIHAASVGEVNAARPLIKRLRKQRPDLRILLTTTTPTGREMARKLLPDRVDVQYLPLD-------------------- 82 (186)
T ss_dssp -EEEE-SSHHHHHHHHHHHHHHTT---TS-EEEEES-CCHHHHHHGG-GGG-SEEE---S--------------------
T ss_pred cEEEEECCHHHHHHHHHHHHHHHHhCCCCeEEEEecCCchHHHHHHhCCCCeEEEEeCcc--------------------
Confidence 3334445789999999999999998 899988887311 1111 10 022333333311
Q ss_pred hchhHHHHHHHHHHhhcCCCCCceEEEecCcc--chHHHHHHHhCCceEEEecc
Q 046167 86 NCREPFRNWLVQMIKEQQPGDEIVCIIYDEVM--YFAEASASQLNVQSIILRTS 137 (424)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~pDlvi~d~~~--~~~~~~A~~lgiP~v~~~~~ 137 (424)
....++..++.+ +||++|.-... +.....|++.|||++.+..-
T Consensus 83 -~~~~~~rfl~~~--------~P~~~i~~EtElWPnll~~a~~~~ip~~LvNar 127 (186)
T PF04413_consen 83 -FPWAVRRFLDHW--------RPDLLIWVETELWPNLLREAKRRGIPVVLVNAR 127 (186)
T ss_dssp -SHHHHHHHHHHH----------SEEEEES----HHHHHH-----S-EEEEEE-
T ss_pred -CHHHHHHHHHHh--------CCCEEEEEccccCHHHHHHHhhcCCCEEEEeee
Confidence 112233456777 89988875444 44446788889999987554
No 257
>COG1663 LpxK Tetraacyldisaccharide-1-P 4'-kinase [Cell envelope biogenesis, outer membrane]
Probab=60.45 E-value=36 Score=31.96 Aligned_cols=35 Identities=17% Similarity=0.343 Sum_probs=30.2
Q ss_pred EcCCCccChHHHHHHHHHHHhCCCeEEEEeCCCCC
Q 046167 14 VPSPHQGHINPMLQLGTILHSKGFSITVVHTQFNS 48 (424)
Q Consensus 14 ~~~~~~GH~~p~~~la~~L~~~Gh~V~~~~~~~~~ 48 (424)
++.||.|-.--.+.||++|++||..|.+++..+..
T Consensus 55 ltvGGtGKTP~vi~la~~l~~rG~~~gvvSRGYgg 89 (336)
T COG1663 55 LTVGGTGKTPVVIWLAEALQARGVRVGVVSRGYGG 89 (336)
T ss_pred EEECCCCcCHHHHHHHHHHHhcCCeeEEEecCcCC
Confidence 35778899888889999999999999999987554
No 258
>PRK00784 cobyric acid synthase; Provisional
Probab=60.09 E-value=1.3e+02 Score=30.32 Aligned_cols=35 Identities=14% Similarity=0.313 Sum_probs=28.2
Q ss_pred eEEEEcCC-CccChHHHHHHHHHHHhCCCeEEEEeC
Q 046167 10 RVVLVPSP-HQGHINPMLQLGTILHSKGFSITVVHT 44 (424)
Q Consensus 10 ril~~~~~-~~GH~~p~~~la~~L~~~Gh~V~~~~~ 44 (424)
+|++..-. +-|-..-...|++.|+++|++|..+=+
T Consensus 4 ~ifItGT~T~vGKT~vt~~L~~~l~~~G~~v~~~Kp 39 (488)
T PRK00784 4 ALMVQGTASDAGKSTLVAGLCRILARRGYRVAPFKA 39 (488)
T ss_pred eEEEEeCCCCCcHHHHHHHHHHHHHHCCCeEecccc
Confidence 56666443 569999999999999999999987754
No 259
>TIGR03029 EpsG chain length determinant protein tyrosine kinase EpsG. The proteins in this family are homologs of the EpsG protein found in Methylobacillus strain 12S and are generally found in operons with other Eps homologs. The protein is believed to function as the protein tyrosine kinase component of the chain length regulator (along with the transmembrane component EpsF).
Probab=59.95 E-value=1.4e+02 Score=27.17 Aligned_cols=37 Identities=16% Similarity=0.230 Sum_probs=27.8
Q ss_pred ceEEEEcC--CCccChHHHHHHHHHHHhCCCeEEEEeCC
Q 046167 9 RRVVLVPS--PHQGHINPMLQLGTILHSKGFSITVVHTQ 45 (424)
Q Consensus 9 ~ril~~~~--~~~GH~~p~~~la~~L~~~Gh~V~~~~~~ 45 (424)
.|++.++. |+.|-..-...||.+|++.|++|.++=.+
T Consensus 103 ~~vi~vts~~~g~Gktt~a~nLA~~la~~g~~VllID~D 141 (274)
T TIGR03029 103 RKALAVVSAKSGEGCSYIAANLAIVFSQLGEKTLLIDAN 141 (274)
T ss_pred CeEEEEECCCCCCCHHHHHHHHHHHHHhcCCeEEEEeCC
Confidence 45544443 35677777888999999999999999554
No 260
>TIGR02370 pyl_corrinoid methyltransferase cognate corrinoid proteins, Methanosarcina family. This model describes a subfamily of the B12 binding domain (pfam02607, pfam02310) proteins. Members of the seed alignment include corrinoid proteins specific to four different, mutally non-homologous enzymes of the genus Methanosarcina. Three of the four cognate enzymes (trimethylamine, dimethylamine, and monomethylamine methyltransferases) all have the unusual, ribosomally incorporated amino acid pyrrolysine at the active site. All act in systems in which a methyl group is transferred to the corrinoid protein to create methylcobalamin, from which the methyl group is later transferred elsewhere.
Probab=59.88 E-value=16 Score=31.54 Aligned_cols=38 Identities=18% Similarity=0.114 Sum_probs=35.5
Q ss_pred CceEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCC
Q 046167 8 RRRVVLVPSPHQGHINPMLQLGTILHSKGFSITVVHTQ 45 (424)
Q Consensus 8 ~~ril~~~~~~~GH~~p~~~la~~L~~~Gh~V~~~~~~ 45 (424)
+.||++.+.++..|-....-++.-|..+|++|++++..
T Consensus 84 ~~~vv~~t~~gd~H~lG~~~v~~~l~~~G~~vi~LG~~ 121 (197)
T TIGR02370 84 LGKVVCGVAEGDVHDIGKNIVVTMLRANGFDVIDLGRD 121 (197)
T ss_pred CCeEEEEeCCCchhHHHHHHHHHHHHhCCcEEEECCCC
Confidence 46999999999999999999999999999999999876
No 261
>cd01981 Pchlide_reductase_B Pchlide_reductase_B: B protein of the NB protein complex of Protochlorophyllide (Pchlide)_reductase. Pchlide reductase catalyzes the reductive formation of chlorophyllide (chlide) from protochlorophyllide (pchlide) during biosynthesis of chlorophylls and bacteriochlorophylls. This group contains both the light-independent Pchlide reductase (DPOR) and light-dependent Pchlide reductase (LPOR). Angiosperms contain only LPOR, cyanobacteria, algae and gymnosperms contain both DPOR and LPOR, primitive anoxygenic photosynthetic bacteria contain only DPOR. NB is structurally similar to the FeMo protein of nitrogenase, forming an N2B2 heterotetramer. N and B are homologous to the FeMo alpha and beta subunits respectively. Also in common with nitrogenase in vitro DPOR activity requires ATP hydrolysis and dithoionite or ferredoxin as electron donor. The NB protein complex may serve as a catalytic site for Pchlide reduction similar to MoFe for nitrogen reduction.
Probab=59.85 E-value=91 Score=30.67 Aligned_cols=27 Identities=11% Similarity=0.206 Sum_probs=21.8
Q ss_pred CceEEEecCccchHHHHHHHhCCceEEEec
Q 046167 107 EIVCIIYDEVMYFAEASASQLNVQSIILRT 136 (424)
Q Consensus 107 ~pDlvi~d~~~~~~~~~A~~lgiP~v~~~~ 136 (424)
+||++|.+. ....+|+++|+|++.++.
T Consensus 370 ~pdliig~~---~~~~~a~~~gip~~~~~~ 396 (430)
T cd01981 370 EPELIFGTQ---MERHIGKRLDIPCAVISA 396 (430)
T ss_pred CCCEEEecc---hhhHHHHHcCCCEEEEeC
Confidence 899999986 344568999999997744
No 262
>PRK06921 hypothetical protein; Provisional
Probab=59.68 E-value=1.4e+02 Score=27.22 Aligned_cols=36 Identities=17% Similarity=0.264 Sum_probs=29.7
Q ss_pred ceEEEEcCCCccChHHHHHHHHHHHhC-CCeEEEEeC
Q 046167 9 RRVVLVPSPHQGHINPMLQLGTILHSK-GFSITVVHT 44 (424)
Q Consensus 9 ~ril~~~~~~~GH~~p~~~la~~L~~~-Gh~V~~~~~ 44 (424)
..++|+..+|.|=..=..++|++|.++ |+.|.+++.
T Consensus 118 ~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~~ 154 (266)
T PRK06921 118 NSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFPF 154 (266)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEEH
Confidence 457777777888887888999999988 999988865
No 263
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=59.64 E-value=15 Score=35.11 Aligned_cols=37 Identities=16% Similarity=0.326 Sum_probs=33.3
Q ss_pred ceEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCC
Q 046167 9 RRVVLVPSPHQGHINPMLQLGTILHSKGFSITVVHTQ 45 (424)
Q Consensus 9 ~ril~~~~~~~GH~~p~~~la~~L~~~Gh~V~~~~~~ 45 (424)
--|+|+..-|.|-...+-.+|..++++|+.+.++|.+
T Consensus 102 sVimfVGLqG~GKTTtc~KlA~y~kkkG~K~~LvcaD 138 (483)
T KOG0780|consen 102 SVIMFVGLQGSGKTTTCTKLAYYYKKKGYKVALVCAD 138 (483)
T ss_pred cEEEEEeccCCCcceeHHHHHHHHHhcCCceeEEeec
Confidence 4567777889999999999999999999999999997
No 264
>PRK05784 phosphoribosylamine--glycine ligase; Provisional
Probab=58.88 E-value=41 Score=33.70 Aligned_cols=31 Identities=23% Similarity=0.442 Sum_probs=26.3
Q ss_pred ceEEEEcCCCccChHHHHHHHHHHHhC--CCeEEEEeC
Q 046167 9 RRVVLVPSPHQGHINPMLQLGTILHSK--GFSITVVHT 44 (424)
Q Consensus 9 ~ril~~~~~~~GH~~p~~~la~~L~~~--Gh~V~~~~~ 44 (424)
||||++..++..| +|+.+|++. |++|.++-.
T Consensus 1 mkVLviG~Ggreh-----al~~~l~~s~~g~~v~~~~g 33 (486)
T PRK05784 1 MKVLLVGDGAREH-----ALAEALEKSTKGYKVYALSS 33 (486)
T ss_pred CEEEEECCchhHH-----HHHHHHHhCCCCCEEEEEEC
Confidence 6899999988888 688888887 999988854
No 265
>PF01075 Glyco_transf_9: Glycosyltransferase family 9 (heptosyltransferase); InterPro: IPR002201 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 9 GT9 from CAZY comprises enzymes with two known activity; lipopolysaccharide N-acetylglucosaminyltransferase (2.4.1.56 from EC), heptosyltransferase (2.4 from EC). Heptosyltransferase I is thought to add L-glycero-D-manno-heptose to the inner 3-deoxy-D-manno-octulosonic acid (Kdo) residue of the lipopolysaccharide core []. Heptosyltransferase II is a glycosyltransferase involved in the synthesis of the inner core region of lipopolysaccharide []. Lipopolysaccharide is a major component of the outer leaflet of the outer membrane in Gram-negative bacteria. It is composed of three domains; lipid A, Core oligosaccharide and the O-antigen. These enzymes transfer heptose to the lipopolysaccharide core [].; GO: 0016757 transferase activity, transferring glycosyl groups, 0008152 metabolic process; PDB: 1PSW_A 2H1F_A 2GT1_A 3TOV_A 2H1H_A.
Probab=58.71 E-value=91 Score=27.65 Aligned_cols=94 Identities=11% Similarity=0.084 Sum_probs=50.6
Q ss_pred ceEEEEcCCCc-cChHH---HHHHHHHHHhCCCeEEEEeCCCCCCCCCCCCCceEEeCCCCCCCCccccccHHHHHHHHH
Q 046167 9 RRVVLVPSPHQ-GHINP---MLQLGTILHSKGFSITVVHTQFNSPNPSNHPEFEFQSIPDGLMDVNISARNLVDSILLLN 84 (424)
Q Consensus 9 ~ril~~~~~~~-GH~~p---~~~la~~L~~~Gh~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (424)
..|+|.++.+. .--.| +..|++.|.++|.+|.+++++... -.+......
T Consensus 106 ~~i~i~~~a~~~~k~wp~e~~~~l~~~l~~~~~~vvl~g~~~~~---------------------------~~~~~~~~~ 158 (247)
T PF01075_consen 106 PYIGINPGASWPSKRWPAEKWAELIERLKERGYRVVLLGGPEEQ---------------------------EKEIADQIA 158 (247)
T ss_dssp SEEEEE---SSGGGS--HHHHHHHHHHHCCCT-EEEE--SSHHH---------------------------HHHHHHHHH
T ss_pred CeEEEeecCCCccccCCHHHHHHHHHHHHhhCceEEEEccchHH---------------------------HHHHHHHHH
Confidence 45666665544 22223 589999999999888888774110 011111111
Q ss_pred Hh---------chhHHHHHHHHHHhhcCCCCCceEEEecCccchHHHHHHHhCCceEEEecch
Q 046167 85 EN---------CREPFRNWLVQMIKEQQPGDEIVCIIYDEVMYFAEASASQLNVQSIILRTSG 138 (424)
Q Consensus 85 ~~---------~~~~~~~~~~~~~~~~~~~~~pDlvi~d~~~~~~~~~A~~lgiP~v~~~~~~ 138 (424)
.. ....+.++..-+. ..|++|+.- .+..++|..+|+|++.+....
T Consensus 159 ~~~~~~~~~~~~~~~l~e~~ali~-------~a~~~I~~D--tg~~HlA~a~~~p~v~lfg~t 212 (247)
T PF01075_consen 159 AGLQNPVINLAGKTSLRELAALIS-------RADLVIGND--TGPMHLAAALGTPTVALFGPT 212 (247)
T ss_dssp TTHTTTTEEETTTS-HHHHHHHHH-------TSSEEEEES--SHHHHHHHHTT--EEEEESSS
T ss_pred HhcccceEeecCCCCHHHHHHHHh-------cCCEEEecC--ChHHHHHHHHhCCEEEEecCC
Confidence 11 1123444444443 789999864 577789999999999987654
No 266
>TIGR02114 coaB_strep phosphopantothenate--cysteine ligase, streptococcal. In most bacteria, a single bifunctional protein catalyses phosphopantothenoylcysteine decarboxylase and phosphopantothenate--cysteine ligase activities, sequential steps in coenzyme A biosynthesis (see TIGR00521). These activities reside in separate proteins encoded by tandem genes in some bacterial lineages. This model describes proteins from the genera Streptococcus and Enterococcus homologous to the C-terminal region of TIGR00521, corresponding to phosphopantothenate--cysteine ligase activity.
Probab=58.40 E-value=9.5 Score=33.88 Aligned_cols=35 Identities=17% Similarity=0.320 Sum_probs=26.0
Q ss_pred eEEEEcCCCccChHHH------------HHHHHHHHhCCCeEEEEeC
Q 046167 10 RVVLVPSPHQGHINPM------------LQLGTILHSKGFSITVVHT 44 (424)
Q Consensus 10 ril~~~~~~~GH~~p~------------~~la~~L~~~Gh~V~~~~~ 44 (424)
|||+.++|+.-.+.|. .++|++|.++|++|+++..
T Consensus 1 ~vliT~G~T~e~iD~VR~itN~SSGgIG~AIA~~la~~Ga~Vvlv~~ 47 (227)
T TIGR02114 1 KILVTSGGTSEPIDSVRSITNHSTGHLGKIITETFLSAGHEVTLVTT 47 (227)
T ss_pred CEEEccCCccCCCCCceeecCCcccHHHHHHHHHHHHCCCEEEEEcC
Confidence 4566666666666553 3799999999999998854
No 267
>TIGR00345 arsA arsenite-activated ATPase (arsA). The N-terminal 50 amino acids hits Pfam families NB-ARC and fer4_NifH. residues 4-11 of the seed alignment contain a potential ATP binding site. The function of the gene product is to catalyze the extrusion of the oxyanions arsenite, antimonite and arsenate for detoxification. Some members of this family contain a duplication so the model finds hits twice.
Probab=58.16 E-value=96 Score=28.54 Aligned_cols=24 Identities=17% Similarity=0.128 Sum_probs=19.9
Q ss_pred HHHHHHHHhCCCeEEEEeCCCCCC
Q 046167 26 LQLGTILHSKGFSITVVHTQFNSP 49 (424)
Q Consensus 26 ~~la~~L~~~Gh~V~~~~~~~~~~ 49 (424)
.++|..++++|++|.++..++...
T Consensus 3 ~a~a~~~a~~g~~vllv~~Dp~~~ 26 (284)
T TIGR00345 3 CATAIRLAEQGKKVLLVSTDPAHS 26 (284)
T ss_pred HHHHHHHHHCCCeEEEEECCCCCC
Confidence 468899999999999999975543
No 268
>PRK06849 hypothetical protein; Provisional
Probab=58.10 E-value=19 Score=34.80 Aligned_cols=34 Identities=15% Similarity=0.429 Sum_probs=26.9
Q ss_pred CceEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCC
Q 046167 8 RRRVVLVPSPHQGHINPMLQLGTILHSKGFSITVVHTQ 45 (424)
Q Consensus 8 ~~ril~~~~~~~GH~~p~~~la~~L~~~Gh~V~~~~~~ 45 (424)
+++||++... ..-.+.+|+.|.++||+|.++...
T Consensus 4 ~~~VLI~G~~----~~~~l~iar~l~~~G~~Vi~~d~~ 37 (389)
T PRK06849 4 KKTVLITGAR----APAALELARLFHNAGHTVILADSL 37 (389)
T ss_pred CCEEEEeCCC----cHHHHHHHHHHHHCCCEEEEEeCC
Confidence 3788887432 235899999999999999999774
No 269
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=58.09 E-value=16 Score=29.67 Aligned_cols=37 Identities=22% Similarity=0.293 Sum_probs=34.1
Q ss_pred CceEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeC
Q 046167 8 RRRVVLVPSPHQGHINPMLQLGTILHSKGFSITVVHT 44 (424)
Q Consensus 8 ~~ril~~~~~~~GH~~p~~~la~~L~~~Gh~V~~~~~ 44 (424)
+.||++.+.+..||-...--+++.|+..|.+|...+.
T Consensus 12 rprvlvak~GlDgHd~gakvia~~l~d~GfeVi~~g~ 48 (143)
T COG2185 12 RPRVLVAKLGLDGHDRGAKVIARALADAGFEVINLGL 48 (143)
T ss_pred CceEEEeccCccccccchHHHHHHHHhCCceEEecCC
Confidence 5799999999999999999999999999999988765
No 270
>TIGR02128 G6PI_arch bifunctional phosphoglucose/phosphomannose isomerase. This bifunctional isomerase is a member of the larger PGI superfamily and only distantly related to other glucose-6-phosphate isomerases. The family is limited to the archaea.
Probab=58.05 E-value=73 Score=29.76 Aligned_cols=117 Identities=14% Similarity=0.113 Sum_probs=61.7
Q ss_pred eEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCCCCCCCCCCCCCceEEeCCCCCCCCccccccHHHHHHHHHHhchh
Q 046167 10 RVVLVPSPHQGHINPMLQLGTILHSKGFSITVVHTQFNSPNPSNHPEFEFQSIPDGLMDVNISARNLVDSILLLNENCRE 89 (424)
Q Consensus 10 ril~~~~~~~GH~~p~~~la~~L~~~Gh~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (424)
+-+++.....|...-.+..++..+++|..|..+|.........+..|.....+|.+.........-....+..+...+..
T Consensus 67 ~dlvI~iS~SG~t~e~~~a~~~A~~~g~~ii~iT~~g~L~~~a~~~~~~~i~vP~~~~~R~s~~~~~~~~l~~l~~~~g~ 146 (308)
T TIGR02128 67 KTLLIAVSYSGNTEETLSAVEEAKKKGAKVIAITSGGRLEEMAKERGLDVIKIPKGLQPRAAFPYLLTPLILMLIKPLGI 146 (308)
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHcCCEEEEECCCcHHHHHHHhcCCeEEEcCCCCCCeeeHHHHHHHHHHHHHHHcCC
Confidence 33455555566667777788888899999998886432222222247788888876554321111111112222222222
Q ss_pred HHHHHHHHHHhhcCCCCCceEEEecCccchHHHHHHHhC--CceEEEec
Q 046167 90 PFRNWLVQMIKEQQPGDEIVCIIYDEVMYFAEASASQLN--VQSIILRT 136 (424)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~pDlvi~d~~~~~~~~~A~~lg--iP~v~~~~ 136 (424)
.+.+....+. .||. +.+...+-.+|..+. +|++.-+.
T Consensus 147 d~~~~~~~l~-------~~~~---~~~~n~Ak~LA~~l~~~~pvi~~~~ 185 (308)
T TIGR02128 147 DIEEAELLEG-------GLDT---PKLKALAKRLAEEIYNRIPVIYSSS 185 (308)
T ss_pred ChHHHHHHhc-------CCcc---ccccCHHHHHHHHhhCCCCEEEeCC
Confidence 2222222221 4552 334456666776664 88887654
No 271
>cd01423 MGS_CPS_I_III Methylglyoxal synthase-like domain found in pyr1 and URA1-like carbamoyl phosphate synthetases (CPS), including ammonia-dependent CPS Type I, and glutamine-dependent CPS Type III. These are multidomain proteins, in which MGS is the C-terminal domain.
Probab=57.77 E-value=26 Score=27.15 Aligned_cols=94 Identities=11% Similarity=0.074 Sum_probs=51.4
Q ss_pred EEcCCCccChHHHHHHHHHHHhCCCeEEEEeCCCCCCCCCCCCCceEEeCCCCCCCCccccccHHHHHHHHHHhchhHHH
Q 046167 13 LVPSPHQGHINPMLQLGTILHSKGFSITVVHTQFNSPNPSNHPEFEFQSIPDGLMDVNISARNLVDSILLLNENCREPFR 92 (424)
Q Consensus 13 ~~~~~~~GH~~p~~~la~~L~~~Gh~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (424)
|++.... +-.-++.+|+.|.+.|++|. +|.. ...... ..|+.+..+.+....+. .+ ..
T Consensus 4 lisv~~~-dk~~~~~~a~~l~~~G~~i~-aT~g-Ta~~L~-~~gi~~~~v~~~~~~~~---~~------------~~--- 61 (116)
T cd01423 4 LISIGSY-SKPELLPTAQKLSKLGYKLY-ATEG-TADFLL-ENGIPVTPVAWPSEEPQ---ND------------KP--- 61 (116)
T ss_pred EEecCcc-cchhHHHHHHHHHHCCCEEE-EccH-HHHHHH-HcCCCceEeeeccCCCC---CC------------ch---
Confidence 4444433 44568899999999999994 4442 222211 14554444421100000 00 01
Q ss_pred HHHHHHHhhcCCCCCceEEEecCc---------cchHHHHHHHhCCceEE
Q 046167 93 NWLVQMIKEQQPGDEIVCIIYDEV---------MYFAEASASQLNVQSII 133 (424)
Q Consensus 93 ~~~~~~~~~~~~~~~pDlvi~d~~---------~~~~~~~A~~lgiP~v~ 133 (424)
++++.+.+. +.|+||.-+- .+.....|-.+|||+++
T Consensus 62 ~i~~~i~~~-----~idlVIn~~~~~~~~~~~~~~~iRr~Av~~~ip~iT 106 (116)
T cd01423 62 SLRELLAEG-----KIDLVINLPSNRGKRVLDNDYVMRRAADDFAVPLIT 106 (116)
T ss_pred hHHHHHHcC-----CceEEEECCCCCCCccccCcEeeehhhHhhCCcccc
Confidence 133333332 8999999532 24455788899999974
No 272
>PRK07206 hypothetical protein; Provisional
Probab=57.66 E-value=33 Score=33.46 Aligned_cols=31 Identities=23% Similarity=0.348 Sum_probs=24.4
Q ss_pred eEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCC
Q 046167 10 RVVLVPSPHQGHINPMLQLGTILHSKGFSITVVHTQ 45 (424)
Q Consensus 10 ril~~~~~~~GH~~p~~~la~~L~~~Gh~V~~~~~~ 45 (424)
+++++-....| ..++++++++|++|..++..
T Consensus 4 ~~liv~~~~~~-----~~~~~a~~~~G~~~v~v~~~ 34 (416)
T PRK07206 4 KVVIVDPFSSG-----KFLAPAFKKRGIEPIAVTSS 34 (416)
T ss_pred eEEEEcCCchH-----HHHHHHHHHcCCeEEEEEcC
Confidence 78887764333 46899999999999999874
No 273
>cd00532 MGS-like MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase, which catalyzes the enolization of dihydroxyacetone phosphate (DHAP) to produce methylglyoxal. The family also includes the C-terminal domain in carbamoyl phosphate synthetase (CPS) where it catalyzes the last phosphorylation of a coaboxyphosphate intermediate to form the product carbamoyl phosphate and may also play a regulatory role. This family also includes inosine monophosphate cyclohydrolase. The known structures in this family show a common phosphate binding site.
Probab=57.61 E-value=22 Score=27.50 Aligned_cols=85 Identities=9% Similarity=0.019 Sum_probs=49.4
Q ss_pred ChHHHHHHHHHHHhCCCeEEEEeCCCCCCCCCCCCCceEEeCCCCCCCCccccccHHHHHHHHHHhchhHHHHHHHHHHh
Q 046167 21 HINPMLQLGTILHSKGFSITVVHTQFNSPNPSNHPEFEFQSIPDGLMDVNISARNLVDSILLLNENCREPFRNWLVQMIK 100 (424)
Q Consensus 21 H~~p~~~la~~L~~~Gh~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (424)
+=.-++.+|+.|.+.|+++ ++|.. ....... .|+.+..+...- .+ ... ++.+.+.+
T Consensus 10 ~K~~~~~~a~~l~~~G~~i-~AT~g-Ta~~L~~-~Gi~~~~v~~~~-~~-----------------g~~---~i~~~i~~ 65 (112)
T cd00532 10 VKAMLVDLAPKLSSDGFPL-FATGG-TSRVLAD-AGIPVRAVSKRH-ED-----------------GEP---TVDAAIAE 65 (112)
T ss_pred cHHHHHHHHHHHHHCCCEE-EECcH-HHHHHHH-cCCceEEEEecC-CC-----------------CCc---HHHHHHhC
Confidence 4456889999999999999 35543 2222222 566665543210 00 111 12333332
Q ss_pred -hcCCCCCceEEEecCc----------cchHHHHHHHhCCceEEE
Q 046167 101 -EQQPGDEIVCIIYDEV----------MYFAEASASQLNVQSIIL 134 (424)
Q Consensus 101 -~~~~~~~pDlvi~d~~----------~~~~~~~A~~lgiP~v~~ 134 (424)
. +.|+||.-+- .+....+|-..+||+++.
T Consensus 66 ~g-----~idlVIn~~~~~~~~~~~~dg~~iRR~A~~~~Ip~~T~ 105 (112)
T cd00532 66 KG-----KFDVVINLRDPRRDRCTDEDGTALLRLARLYKIPVTTP 105 (112)
T ss_pred CC-----CEEEEEEcCCCCcccccCCChHHHHHHHHHcCCCEEEC
Confidence 2 8999998431 134446788999999974
No 274
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=57.60 E-value=59 Score=27.34 Aligned_cols=92 Identities=11% Similarity=0.075 Sum_probs=56.3
Q ss_pred HHHHHHHHHhCCCeEEEEeCCCCCCC------CCCCCCceEEeCCCCCCCCccccccHHHHHHHHHHhchhHHHHHHHHH
Q 046167 25 MLQLGTILHSKGFSITVVHTQFNSPN------PSNHPEFEFQSIPDGLMDVNISARNLVDSILLLNENCREPFRNWLVQM 98 (424)
Q Consensus 25 ~~~la~~L~~~Gh~V~~~~~~~~~~~------~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (424)
+-.|.+...++|.+|.++++...... ...+++++++-...+.- .....+++++.+
T Consensus 37 ~~~l~~~~~~~~~~ifllG~~~~~~~~~~~~l~~~yP~l~ivg~~~g~f-------------------~~~~~~~i~~~I 97 (172)
T PF03808_consen 37 FPDLLRRAEQRGKRIFLLGGSEEVLEKAAANLRRRYPGLRIVGYHHGYF-------------------DEEEEEAIINRI 97 (172)
T ss_pred HHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHHHCCCeEEEEecCCCC-------------------ChhhHHHHHHHH
Confidence 33556666678999999988633211 34457777776543311 112233355666
Q ss_pred HhhcCCCCCceEEEecCcc----chHHHHHHHhCCceEEEecchHHH
Q 046167 99 IKEQQPGDEIVCIIYDEVM----YFAEASASQLNVQSIILRTSGAVT 141 (424)
Q Consensus 99 ~~~~~~~~~pDlvi~d~~~----~~~~~~A~~lgiP~v~~~~~~~~~ 141 (424)
.++ +||+|++.... .+.......++.+ +.+.....+.
T Consensus 98 ~~~-----~pdiv~vglG~PkQE~~~~~~~~~l~~~-v~i~vG~~~d 138 (172)
T PF03808_consen 98 NAS-----GPDIVFVGLGAPKQERWIARHRQRLPAG-VIIGVGGAFD 138 (172)
T ss_pred HHc-----CCCEEEEECCCCHHHHHHHHHHHHCCCC-EEEEECchhh
Confidence 555 89999998766 5666777788888 4444444433
No 275
>PRK08116 hypothetical protein; Validated
Probab=57.59 E-value=1.4e+02 Score=27.16 Aligned_cols=34 Identities=21% Similarity=0.192 Sum_probs=27.1
Q ss_pred EEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeC
Q 046167 11 VVLVPSPHQGHINPMLQLGTILHSKGFSITVVHT 44 (424)
Q Consensus 11 il~~~~~~~GH~~p~~~la~~L~~~Gh~V~~~~~ 44 (424)
++|+..+|.|-..=+.+++++|.++|+.|.+++.
T Consensus 117 l~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~~ 150 (268)
T PRK08116 117 LLLWGSVGTGKTYLAACIANELIEKGVPVIFVNF 150 (268)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEH
Confidence 6677777888777777899999988988877754
No 276
>COG2109 BtuR ATP:corrinoid adenosyltransferase [Coenzyme metabolism]
Probab=57.32 E-value=98 Score=26.54 Aligned_cols=97 Identities=14% Similarity=0.195 Sum_probs=56.3
Q ss_pred eEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCC----CCCCC--CCC-CCCceEEeCCCCCCCCccccccHHHHHHH
Q 046167 10 RVVLVPSPHQGHINPMLQLGTILHSKGFSITVVHTQ----FNSPN--PSN-HPEFEFQSIPDGLMDVNISARNLVDSILL 82 (424)
Q Consensus 10 ril~~~~~~~GH~~p~~~la~~L~~~Gh~V~~~~~~----~~~~~--~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (424)
-|.+.++.|-|-....+.+|-+-..+|.+|.++--- ...+. ... ..++.|+.+++++.+....... +.
T Consensus 30 li~V~TG~GKGKTTAAlG~alRa~GhG~rv~vvQFiKg~~~~GE~~~~~~~~~~v~~~~~~~g~tw~~~~~~~--d~--- 104 (198)
T COG2109 30 LIIVFTGNGKGKTTAALGLALRALGHGLRVGVVQFIKGGWKYGEEAALEKFGLGVEFHGMGEGFTWETQDREA--DI--- 104 (198)
T ss_pred eEEEEecCCCChhHHHHHHHHHHhcCCCEEEEEEEeecCcchhHHHHHHhhccceeEEecCCceeCCCcCcHH--HH---
Confidence 466777778888777777776666677777665321 11111 111 1468888888777665422211 11
Q ss_pred HHHhchhHHHHHHHHHHhhcCCCCCceEEEecCccc
Q 046167 83 LNENCREPFRNWLVQMIKEQQPGDEIVCIIYDEVMY 118 (424)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~pDlvi~d~~~~ 118 (424)
..+...+....+.+.+. ++|+||.|-+.+
T Consensus 105 --~aa~~~w~~a~~~l~~~-----~ydlviLDEl~~ 133 (198)
T COG2109 105 --AAAKAGWEHAKEALADG-----KYDLVILDELNY 133 (198)
T ss_pred --HHHHHHHHHHHHHHhCC-----CCCEEEEehhhH
Confidence 23333444445555443 799999997553
No 277
>PRK01906 tetraacyldisaccharide 4'-kinase; Provisional
Probab=57.08 E-value=23 Score=33.59 Aligned_cols=36 Identities=22% Similarity=0.349 Sum_probs=29.5
Q ss_pred EcCCCccChHHHHHHHHHHHhCCCeEEEEeCCCCCC
Q 046167 14 VPSPHQGHINPMLQLGTILHSKGFSITVVHTQFNSP 49 (424)
Q Consensus 14 ~~~~~~GH~~p~~~la~~L~~~Gh~V~~~~~~~~~~ 49 (424)
++.||+|-.-=.+.||+.|+++|++|.+++..+...
T Consensus 64 itvGGTGKTP~v~~La~~l~~~G~~~~IlSRGYg~~ 99 (338)
T PRK01906 64 VTVGGTGKTPTVIALVDALRAAGFTPGVVSRGYGAK 99 (338)
T ss_pred ccCCCCChHHHHHHHHHHHHHcCCceEEEecCCCCC
Confidence 346788986667789999999999999999875543
No 278
>COG0297 GlgA Glycogen synthase [Carbohydrate transport and metabolism]
Probab=57.07 E-value=2.2e+02 Score=28.62 Aligned_cols=169 Identities=13% Similarity=0.012 Sum_probs=91.2
Q ss_pred CeEEEEEeCCcccC-CHHHHHHHHHHHHhCCCCeEEEEcCCCCCCCcccccCchhHH---HHhcCCCceeeecch-hh--
Q 046167 237 KSVIYVSLGSVASM-DKKELEEMAWGLVNSKQPFLWVIRPRTNNAPEGIELLPKVLA---EDVQENGYIVKWAPQ-KE-- 309 (424)
Q Consensus 237 ~~~I~vs~Gs~~~~-~~~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~---~~~~~nv~v~~~ip~-~~-- 309 (424)
..+++...|..... ..+....++.-+-+.+.++++.-.++ ..+.+.+. ++.++++.+.-|.+. ..
T Consensus 293 ~~pl~~~vsRl~~QKG~dl~~~~i~~~l~~~~~~vilG~gd--------~~le~~~~~la~~~~~~~~~~i~~~~~la~~ 364 (487)
T COG0297 293 PGPLFGFVSRLTAQKGLDLLLEAIDELLEQGWQLVLLGTGD--------PELEEALRALASRHPGRVLVVIGYDEPLAHL 364 (487)
T ss_pred CCcEEEEeeccccccchhHHHHHHHHHHHhCceEEEEecCc--------HHHHHHHHHHHHhcCceEEEEeeecHHHHHH
Confidence 33555555666652 23555555555555566665444321 12333332 345566666655543 22
Q ss_pred hhccccccccccccc-hh-hHHHhhhcCCceeecCccc--ch----hhHHHHHHhhhhcceecCcccchHHHHHHHHHHh
Q 046167 310 VLSHVAVGGFWSHCG-WN-STLESICEGVPMICMPFFE--DQ----KVNARYLSHVWGVGLELEHELERGAVEKAVRKLT 381 (424)
Q Consensus 310 ll~~~~~~~~i~hgG-~~-t~~eal~~GvP~v~~P~~~--DQ----~~na~~~~~~~G~g~~~~~~~~~~~L~~ai~~ll 381 (424)
+++.+|+=++-+.+- .| |=++|+++|++-|+.+..| |- ..+. .... |.|..+.. .+++.|..++.+.+
T Consensus 365 i~agaD~~lmPSrfEPcGL~ql~amryGtvpIv~~tGGLadTV~~~~~~~--~~~~-gtGf~f~~-~~~~~l~~al~rA~ 440 (487)
T COG0297 365 IYAGADVILMPSRFEPCGLTQLYAMRYGTLPIVRETGGLADTVVDRNEWL--IQGV-GTGFLFLQ-TNPDHLANALRRAL 440 (487)
T ss_pred HHhcCCEEEeCCcCcCCcHHHHHHHHcCCcceEcccCCccceecCccchh--ccCc-eeEEEEec-CCHHHHHHHHHHHH
Confidence 665555522223322 23 4489999999888888755 32 2222 4553 88888888 49999999999887
Q ss_pred cccchHHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHh
Q 046167 382 VDKEGEFLRQRAAQLKEEVELSTRKGGFSYNSLNELLDLIN 422 (424)
Q Consensus 382 ~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~a~~~~~~~~~ 422 (424)
.= ++.....++...+..+..--+-..++.+.++..+
T Consensus 441 ~~-----y~~~~~~w~~~~~~~m~~d~sw~~sa~~y~~lY~ 476 (487)
T COG0297 441 VL-----YRAPPLLWRKVQPNAMGADFSWDLSAKEYVELYK 476 (487)
T ss_pred HH-----hhCCHHHHHHHHHhhcccccCchhHHHHHHHHHH
Confidence 42 3333222333333332211234556666665544
No 279
>PRK07313 phosphopantothenoylcysteine decarboxylase; Validated
Probab=56.82 E-value=15 Score=31.38 Aligned_cols=38 Identities=21% Similarity=0.334 Sum_probs=29.8
Q ss_pred ceEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCCCC
Q 046167 9 RRVVLVPSPHQGHINPMLQLGTILHSKGFSITVVHTQFN 47 (424)
Q Consensus 9 ~ril~~~~~~~GH~~p~~~la~~L~~~Gh~V~~~~~~~~ 47 (424)
+||++.-.|+.|=+ -...+.+.|+++|++|.++.++..
T Consensus 2 k~Ill~vtGsiaa~-~~~~li~~L~~~g~~V~vv~T~~A 39 (182)
T PRK07313 2 KNILLAVSGSIAAY-KAADLTSQLTKRGYQVTVLMTKAA 39 (182)
T ss_pred CEEEEEEeChHHHH-HHHHHHHHHHHCCCEEEEEEChhH
Confidence 36777766665554 489999999999999999998643
No 280
>TIGR02195 heptsyl_trn_II lipopolysaccharide heptosyltransferase II. This family consists of examples of ADP-heptose:LPS heptosyltransferase II, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=56.69 E-value=1.7e+02 Score=27.36 Aligned_cols=99 Identities=15% Similarity=0.200 Sum_probs=56.2
Q ss_pred ceEEEEcCCCccC-----hHHHHHHHHHHHhCCCeEEEEeCCCCCCCCCCCCCceEEeCCCCCCCCccccccHHHHHHHH
Q 046167 9 RRVVLVPSPHQGH-----INPMLQLGTILHSKGFSITVVHTQFNSPNPSNHPEFEFQSIPDGLMDVNISARNLVDSILLL 83 (424)
Q Consensus 9 ~ril~~~~~~~GH-----~~p~~~la~~L~~~Gh~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (424)
..|++.++.+.|. ..-+..|++.|.++|.+|.+++++...+... .+.-. .+ . . .
T Consensus 175 ~~i~i~pga~~~~~K~Wp~e~~~~li~~l~~~~~~ivl~G~~~e~~~~~---~i~~~-~~----~------~-------~ 233 (334)
T TIGR02195 175 PIIAFCPGAEFGPAKRWPHEHYAELAKRLIDQGYQVVLFGSAKDHPAGN---EIEAL-LP----G------E-------L 233 (334)
T ss_pred CEEEEcCCCCCCccCCCCHHHHHHHHHHHHHCCCEEEEEEChhhHHHHH---HHHHh-CC----c------c-------c
Confidence 3455655543332 2247789999998999998887742221100 00000 00 0 0 0
Q ss_pred HHh-chhHHHHHHHHHHhhcCCCCCceEEEecCccchHHHHHHHhCCceEEEecc
Q 046167 84 NEN-CREPFRNWLVQMIKEQQPGDEIVCIIYDEVMYFAEASASQLNVQSIILRTS 137 (424)
Q Consensus 84 ~~~-~~~~~~~~~~~~~~~~~~~~~pDlvi~d~~~~~~~~~A~~lgiP~v~~~~~ 137 (424)
... -...+.++..-+. +.|++|+.- .+..++|..+|+|++.+...
T Consensus 234 ~~l~g~~sL~el~ali~-------~a~l~I~~D--SGp~HlAaA~~~P~i~lfG~ 279 (334)
T TIGR02195 234 RNLAGETSLDEAVDLIA-------LAKAVVTND--SGLMHVAAALNRPLVALYGS 279 (334)
T ss_pred ccCCCCCCHHHHHHHHH-------hCCEEEeeC--CHHHHHHHHcCCCEEEEECC
Confidence 001 1123445555554 689999864 56778999999999988654
No 281
>cd02032 Bchl_like This family of proteins contains bchL and chlL. Protochlorophyllide reductase catalyzes the reductive formation of chlorophyllide from protochlorophyllide during biosynthesis of chlorophylls and bacteriochlorophylls. Three genes, bchL, bchN and bchB, are involved in light-independent protochlorophyllide reduction in bacteriochlorophyll biosynthesis. In cyanobacteria, algae, and gymnosperms, three similar genes, chlL, chlN and chlB are involved in protochlorophyllide reduction during chlorophylls biosynthesis. BchL/chlL, bchN/chlN and bchB/chlB exhibit significant sequence similarity to the nifH, nifD and nifK subunits of nitrogenase, respectively. Nitrogenase catalyzes the reductive formation of ammonia from dinitrogen.
Probab=56.63 E-value=19 Score=32.77 Aligned_cols=37 Identities=11% Similarity=0.102 Sum_probs=32.8
Q ss_pred ceEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCC
Q 046167 9 RRVVLVPSPHQGHINPMLQLGTILHSKGFSITVVHTQ 45 (424)
Q Consensus 9 ~ril~~~~~~~GH~~p~~~la~~L~~~Gh~V~~~~~~ 45 (424)
|+|.+..-||-|-..-...||..|+++|++|.++=.+
T Consensus 1 ~~i~v~gKGGvGKTT~a~nLA~~la~~G~rvlliD~D 37 (267)
T cd02032 1 MVLAVYGKGGIGKSTTSSNLSVALAKRGKKVLQIGCD 37 (267)
T ss_pred CEEEEecCCCCCHHHHHHHHHHHHHHCCCcEEEEecC
Confidence 5788887788999999999999999999999998665
No 282
>TIGR01281 DPOR_bchL light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein. The BchL peptide (ChlL in chloroplast and cyanobacteria) is an ATP-binding iron-sulfur protein of the dark form protochlorophyllide reductase, an enzyme similar to nitrogenase. This subunit resembles the nitrogenase NifH subunit.
Probab=56.09 E-value=20 Score=32.64 Aligned_cols=37 Identities=8% Similarity=0.035 Sum_probs=32.5
Q ss_pred ceEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCC
Q 046167 9 RRVVLVPSPHQGHINPMLQLGTILHSKGFSITVVHTQ 45 (424)
Q Consensus 9 ~ril~~~~~~~GH~~p~~~la~~L~~~Gh~V~~~~~~ 45 (424)
|+|.+..-||-|-..-...||.+|+++|++|.++=.+
T Consensus 1 ~~i~~~gKGGVGKTT~~~nLA~~La~~g~rVLliD~D 37 (268)
T TIGR01281 1 MILAVYGKGGIGKSTTSSNLSVAFAKLGKRVLQIGCD 37 (268)
T ss_pred CEEEEEcCCcCcHHHHHHHHHHHHHhCCCeEEEEecC
Confidence 5787887788899999999999999999999998554
No 283
>PRK14477 bifunctional nitrogenase molybdenum-cofactor biosynthesis protein NifE/NifN; Provisional
Probab=55.68 E-value=86 Score=34.32 Aligned_cols=94 Identities=13% Similarity=0.003 Sum_probs=51.5
Q ss_pred CceEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCCCCCCC-CCCCCCceEEeCCCCCCCCccccccHHHHHH-HHHH
Q 046167 8 RRRVVLVPSPHQGHINPMLQLGTILHSKGFSITVVHTQFNSPN-PSNHPEFEFQSIPDGLMDVNISARNLVDSIL-LLNE 85 (424)
Q Consensus 8 ~~ril~~~~~~~GH~~p~~~la~~L~~~Gh~V~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 85 (424)
.+|++++..+. ....+++.|.+.|-+|..+++...... ... ...... ...-
T Consensus 320 GKrv~i~~g~~-----~~~~la~~l~elGmevv~~g~~~~~~~d~~~----------------------~~~~~~~~~~v 372 (917)
T PRK14477 320 GKRVVLFTGGV-----KTWSMVNALRELGVEVLAAGTQNSTLEDFAR----------------------MKALMHKDAHI 372 (917)
T ss_pred CCEEEEECCCc-----hHHHHHHHHHHCCCEEEEEcCCCCCHHHHHH----------------------HHHhcCCCCEE
Confidence 46888876442 356788899999999988665321110 000 000000 0000
Q ss_pred hchhHHHHHHHHHHhhcCCCCCceEEEecCccchHHHHHHHhCCceEEEec
Q 046167 86 NCREPFRNWLVQMIKEQQPGDEIVCIIYDEVMYFAEASASQLNVQSIILRT 136 (424)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~pDlvi~d~~~~~~~~~A~~lgiP~v~~~~ 136 (424)
.......++.+.+++. +||++|.+. -...+|+++|||++...+
T Consensus 373 i~~~d~~el~~~i~~~-----~pDLlig~~---~~~~~a~k~giP~~~~~~ 415 (917)
T PRK14477 373 IEDTSTAGLLRVMREK-----MPDLIVAGG---KTKFLALKTRTPFLDINH 415 (917)
T ss_pred EECCCHHHHHHHHHhc-----CCCEEEecC---chhhHHHHcCCCeEEccC
Confidence 0011122223333332 899999865 345689999999997553
No 284
>PF00551 Formyl_trans_N: Formyl transferase; InterPro: IPR002376 A number of formyl transferases belong to this group. Methionyl-tRNA formyltransferase transfers a formyl group onto the amino terminus of the acyl moiety of the methionyl aminoacyl-tRNA. The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and by impairing its binding to EFTU-GTP. Formyltetrahydrofolate dehydrogenase produces formate from formyl- tetrahydrofolate. This is the N-terminal domain of these enzymes and is found upstream of the C-terminal domain (IPR005793 from INTERPRO). The trifunctional glycinamide ribonucleotide synthetase-aminoimidazole ribonucleotide synthetase-glycinamide ribonucleotide transformylase catalyses the second, third and fifth steps in de novo purine biosynthesis. The glycinamide ribonucleotide transformylase belongs to this group.; GO: 0016742 hydroxymethyl-, formyl- and related transferase activity, 0009058 biosynthetic process; PDB: 3P9X_B 3OBI_A 3R8X_A 3KCQ_C 3RFO_D 3AV3_A 3N0V_D 3LOU_A 3O1L_A 4DS3_A ....
Probab=55.60 E-value=22 Score=30.23 Aligned_cols=33 Identities=27% Similarity=0.315 Sum_probs=22.9
Q ss_pred ceEEEEcCCCccChHHHHHHHHHHHhCCCe--EEEEeC
Q 046167 9 RRVVLVPSPHQGHINPMLQLGTILHSKGFS--ITVVHT 44 (424)
Q Consensus 9 ~ril~~~~~~~GH~~p~~~la~~L~~~Gh~--V~~~~~ 44 (424)
|||+|+..++. .-+..+.++|.+++|+ +..+.+
T Consensus 1 mrI~~~~Sg~~---~~~~~~l~~l~~~~~~~~iv~Vit 35 (181)
T PF00551_consen 1 MRIVFFGSGSG---SFLKALLEALKARGHNVEIVLVIT 35 (181)
T ss_dssp EEEEEEESSSS---HHHHHHHHHHHTTSSEEEEEEEEE
T ss_pred CEEEEEEcCCC---HHHHHHHHHHHhCCCCceEEEEec
Confidence 58888866544 4466678899999998 444443
No 285
>COG0052 RpsB Ribosomal protein S2 [Translation, ribosomal structure and biogenesis]
Probab=55.42 E-value=1.1e+02 Score=27.28 Aligned_cols=30 Identities=17% Similarity=0.159 Sum_probs=22.7
Q ss_pred ceEEEe-cCcc-chHHHHHHHhCCceEEEecc
Q 046167 108 IVCIIY-DEVM-YFAEASASQLNVQSIILRTS 137 (424)
Q Consensus 108 pDlvi~-d~~~-~~~~~~A~~lgiP~v~~~~~ 137 (424)
||+++. |+.. .-+..=|.++|||+|.+.-+
T Consensus 157 Pd~l~ViDp~~e~iAv~EA~klgIPVvAlvDT 188 (252)
T COG0052 157 PDVLFVIDPRKEKIAVKEANKLGIPVVALVDT 188 (252)
T ss_pred CCEEEEeCCcHhHHHHHHHHHcCCCEEEEecC
Confidence 997655 6655 56667889999999987554
No 286
>cd01424 MGS_CPS_II Methylglyoxal synthase-like domain from type II glutamine-dependent carbamoyl phosphate synthetase (CSP). CSP, a CarA and CarB heterodimer, catalyzes the production of carbamoyl phosphate which is subsequently employed in the metabolic pathways responsible for the synthesis of pyrimidine nucleotides or arginine. The MGS-like domain is the C-terminal domain of CarB and appears to play a regulatory role in CPS function by binding allosteric effector molecules, including UMP and ornithine.
Probab=55.11 E-value=26 Score=26.83 Aligned_cols=85 Identities=12% Similarity=0.104 Sum_probs=50.7
Q ss_pred cChHHHHHHHHHHHhCCCeEEEEeCCCCCCCCCCCCCceEEeCCCCCCCCccccccHHHHHHHHHHhchhHHHHHHHHHH
Q 046167 20 GHINPMLQLGTILHSKGFSITVVHTQFNSPNPSNHPEFEFQSIPDGLMDVNISARNLVDSILLLNENCREPFRNWLVQMI 99 (424)
Q Consensus 20 GH~~p~~~la~~L~~~Gh~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (424)
.+-.-++++++.|.+.|+++. +|.. ....... .|+.+..+...- ... .++.+.+.
T Consensus 10 ~~k~~~~~~~~~l~~~G~~l~-aT~g-T~~~l~~-~gi~~~~v~~~~-------------------~~~---~~i~~~i~ 64 (110)
T cd01424 10 RDKPEAVEIAKRLAELGFKLV-ATEG-TAKYLQE-AGIPVEVVNKVS-------------------EGR---PNIVDLIK 64 (110)
T ss_pred CcHhHHHHHHHHHHHCCCEEE-EchH-HHHHHHH-cCCeEEEEeecC-------------------CCc---hhHHHHHH
Confidence 355678899999999999994 5442 2222221 466655443110 011 12333343
Q ss_pred hhcCCCCCceEEEecCc-------cchHHHHHHHhCCceEEE
Q 046167 100 KEQQPGDEIVCIIYDEV-------MYFAEASASQLNVQSIIL 134 (424)
Q Consensus 100 ~~~~~~~~pDlvi~d~~-------~~~~~~~A~~lgiP~v~~ 134 (424)
+. +.|+||..+- .+.....|-.+|||+++.
T Consensus 65 ~~-----~id~vIn~~~~~~~~~~~~~iRR~Av~~~ipl~T~ 101 (110)
T cd01424 65 NG-----EIQLVINTPSGKRAIRDGFSIRRAALEYKVPYFTT 101 (110)
T ss_pred cC-----CeEEEEECCCCCccCccHHHHHHHHHHhCCCEEec
Confidence 32 8999998531 245567888999999953
No 287
>PF08323 Glyco_transf_5: Starch synthase catalytic domain; InterPro: IPR013534 This region represents the catalytic domain of glycogen (or starch) synthases that use ADP-glucose (2.4.1.21 from EC), rather than UDP-glucose (2.4.1.11 from EC) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.; PDB: 2BIS_C 3L01_A 3FRO_A 2R4U_A 2R4T_A 3D1J_A 3COP_A 3GUH_A 2QZS_A 3CX4_A ....
Probab=54.85 E-value=16 Score=32.79 Aligned_cols=25 Identities=16% Similarity=0.289 Sum_probs=19.3
Q ss_pred hHHHHHHHHHHHhCCCeEEEEeCCC
Q 046167 22 INPMLQLGTILHSKGFSITVVHTQF 46 (424)
Q Consensus 22 ~~p~~~la~~L~~~Gh~V~~~~~~~ 46 (424)
-.-.-.|+++|+++||+|+++++..
T Consensus 19 gdv~~~L~kaL~~~G~~V~Vi~P~y 43 (245)
T PF08323_consen 19 GDVVGSLPKALAKQGHDVRVIMPKY 43 (245)
T ss_dssp HHHHHHHHHHHHHTT-EEEEEEE-T
T ss_pred hHHHHHHHHHHHhcCCeEEEEEccc
Confidence 3345679999999999999999864
No 288
>TIGR02201 heptsyl_trn_III lipopolysaccharide heptosyltransferase III, putative. This family consists of examples of the putative ADP-heptose:LPS heptosyltransferase III, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria. This enzyme may be less widely distributed than heptosyltransferases I and II.
Probab=54.74 E-value=1.9e+02 Score=27.24 Aligned_cols=86 Identities=12% Similarity=0.083 Sum_probs=48.8
Q ss_pred HHHHHHHHHHhCCCeEEEEeCCCCCCCCCCCCCceEEeCCCCCCCCccccccHHHHHHHHHH-hchhHHHHHHHHHHhhc
Q 046167 24 PMLQLGTILHSKGFSITVVHTQFNSPNPSNHPEFEFQSIPDGLMDVNISARNLVDSILLLNE-NCREPFRNWLVQMIKEQ 102 (424)
Q Consensus 24 p~~~la~~L~~~Gh~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 102 (424)
-+..|++.|.++|++|.+++++...+... ...+ ...... .. ... .-...+.++..-+.
T Consensus 201 ~~~~l~~~l~~~~~~ivl~g~p~~~e~~~-~~~i-----~~~~~~-----~~-------~~~l~g~~sL~el~ali~--- 259 (344)
T TIGR02201 201 RFSALIDALHARGYEVVLTSGPDKDELAM-VNEI-----AQGCQT-----PR-------VTSLAGKLTLPQLAALID--- 259 (344)
T ss_pred HHHHHHHHHHhCCCeEEEecCCCHHHHHH-HHHH-----HhhCCC-----Cc-------ccccCCCCCHHHHHHHHH---
Confidence 46789999988899988886632111000 0000 000000 00 000 11123455555554
Q ss_pred CCCCCceEEEecCccchHHHHHHHhCCceEEEec
Q 046167 103 QPGDEIVCIIYDEVMYFAEASASQLNVQSIILRT 136 (424)
Q Consensus 103 ~~~~~pDlvi~d~~~~~~~~~A~~lgiP~v~~~~ 136 (424)
+.|++|+.- .+..++|..+|+|+|.+..
T Consensus 260 ----~a~l~Vs~D--SGp~HlAaA~g~p~v~Lfg 287 (344)
T TIGR02201 260 ----HARLFIGVD--SVPMHMAAALGTPLVALFG 287 (344)
T ss_pred ----hCCEEEecC--CHHHHHHHHcCCCEEEEEC
Confidence 789999874 5777899999999998865
No 289
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=53.83 E-value=60 Score=31.94 Aligned_cols=37 Identities=16% Similarity=0.230 Sum_probs=31.6
Q ss_pred ceEEEEcCCCccChHHHHHHHHHHH-hCCCeEEEEeCC
Q 046167 9 RRVVLVPSPHQGHINPMLQLGTILH-SKGFSITVVHTQ 45 (424)
Q Consensus 9 ~ril~~~~~~~GH~~p~~~la~~L~-~~Gh~V~~~~~~ 45 (424)
..++++..+|.|-..-...||..|. ++|.+|.+++.+
T Consensus 100 ~vi~~vG~~GsGKTTtaakLA~~l~~~~g~kV~lV~~D 137 (428)
T TIGR00959 100 TVILMVGLQGSGKTTTCGKLAYYLKKKQGKKVLLVACD 137 (428)
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHhCCCeEEEEecc
Confidence 3456666778999999999999997 589999999987
No 290
>PF04321 RmlD_sub_bind: RmlD substrate binding domain; InterPro: IPR005913 dTDP-4-dehydrorhamnose reductase (1.1.1.133 from EC) catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS molecules such as core antigen and O-antigen. dTDP-6-deoxy-L-mannose + NADP+ = dTDP-4-dehydro-6-deoxy-L-mannose + NADPH ; GO: 0008831 dTDP-4-dehydrorhamnose reductase activity, 0045226 extracellular polysaccharide biosynthetic process; PDB: 2YDX_D 2YDY_A 3SC6_C 1VL0_B 2GGS_A 1KBZ_A 1KC3_A 1KC1_A 1N2S_A.
Probab=53.73 E-value=30 Score=31.85 Aligned_cols=31 Identities=16% Similarity=0.409 Sum_probs=22.7
Q ss_pred ceEEEEcCCCc-cChHHHHHHHHHHHhCCCeEEEEeC
Q 046167 9 RRVVLVPSPHQ-GHINPMLQLGTILHSKGFSITVVHT 44 (424)
Q Consensus 9 ~ril~~~~~~~-GH~~p~~~la~~L~~~Gh~V~~~~~ 44 (424)
||||++-..|. |. +|.+.|.++||+|.-.+.
T Consensus 1 MriLI~GasG~lG~-----~l~~~l~~~~~~v~~~~r 32 (286)
T PF04321_consen 1 MRILITGASGFLGS-----ALARALKERGYEVIATSR 32 (286)
T ss_dssp EEEEEETTTSHHHH-----HHHHHHTTTSEEEEEEST
T ss_pred CEEEEECCCCHHHH-----HHHHHHhhCCCEEEEeCc
Confidence 68888765433 43 678999999999887744
No 291
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=53.73 E-value=1.7e+02 Score=27.57 Aligned_cols=38 Identities=16% Similarity=0.232 Sum_probs=34.8
Q ss_pred CceEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCC
Q 046167 8 RRRVVLVPSPHQGHINPMLQLGTILHSKGFSITVVHTQ 45 (424)
Q Consensus 8 ~~ril~~~~~~~GH~~p~~~la~~L~~~Gh~V~~~~~~ 45 (424)
+--|+|+...|.|-..-.-.||..|++.|+.|.++..+
T Consensus 139 p~Vil~vGVNG~GKTTTIaKLA~~l~~~g~~VllaA~D 176 (340)
T COG0552 139 PFVILFVGVNGVGKTTTIAKLAKYLKQQGKSVLLAAGD 176 (340)
T ss_pred cEEEEEEecCCCchHhHHHHHHHHHHHCCCeEEEEecc
Confidence 45678888999999999999999999999999999985
No 292
>TIGR00347 bioD dethiobiotin synthase. Dethiobiotin synthase is involved in biotin biosynthesis and catalyses the reaction (CO2 + 7,8-diaminononanoate + ATP = dethiobiotin + phosphate + ADP). The enzyme binds ATP (see motif in first 12 residues of the SEED alignment) and requires magnesium as a co-factor.
Probab=53.55 E-value=1.2e+02 Score=24.98 Aligned_cols=28 Identities=18% Similarity=0.237 Sum_probs=24.6
Q ss_pred cCCCccChHHHHHHHHHHHhCCCeEEEE
Q 046167 15 PSPHQGHINPMLQLGTILHSKGFSITVV 42 (424)
Q Consensus 15 ~~~~~GH~~p~~~la~~L~~~Gh~V~~~ 42 (424)
+.++.|-..-.+.|++.|+++|.+|.++
T Consensus 5 t~~~~GKT~va~~L~~~l~~~g~~V~~~ 32 (166)
T TIGR00347 5 TDTGVGKTVASSALAAKLKKAGYSVGYY 32 (166)
T ss_pred CCCCccHHHHHHHHHHHHHHCCCcEEEE
Confidence 3457789899999999999999999986
No 293
>PRK06029 3-octaprenyl-4-hydroxybenzoate carboxy-lyase; Provisional
Probab=53.50 E-value=19 Score=30.84 Aligned_cols=38 Identities=18% Similarity=0.166 Sum_probs=30.4
Q ss_pred ceEEEEcCCCccChHHHHHHHHHHHh-CCCeEEEEeCCCC
Q 046167 9 RRVVLVPSPHQGHINPMLQLGTILHS-KGFSITVVHTQFN 47 (424)
Q Consensus 9 ~ril~~~~~~~GH~~p~~~la~~L~~-~Gh~V~~~~~~~~ 47 (424)
+||++.-.|+.| .+-...+.++|.+ .||+|.++.++..
T Consensus 2 k~IllgVTGsia-a~ka~~l~~~L~k~~g~~V~vv~T~~A 40 (185)
T PRK06029 2 KRLIVGISGASG-AIYGVRLLQVLRDVGEIETHLVISQAA 40 (185)
T ss_pred CEEEEEEECHHH-HHHHHHHHHHHHhhcCCeEEEEECHHH
Confidence 367777666666 6779999999999 5999999999633
No 294
>cd01425 RPS2 Ribosomal protein S2 (RPS2), involved in formation of the translation initiation complex, where it might contact the messenger RNA and several components of the ribosome. It has been shown that in Escherichia coli RPS2 is essential for the binding of ribosomal protein S1 to the 30s ribosomal subunit. In humans, most likely in all vertebrates, and perhaps in all metazoans, the protein also functions as the 67 kDa laminin receptor (LAMR1 or 67LR), which is formed from a 37 kDa precursor, and is overexpressed in many tumors. 67LR is a cell surface receptor which interacts with a variety of ligands, laminin-1 and others. It is assumed that the ligand interactions are mediated via the conserved C-terminus, which becomes extracellular as the protein undergoes conformational changes which are not well understood. Specifically, a conserved palindromic motif, LMWWML, may participate in the interactions. 67LR plays essential roles in the adhesion of cells to the basement membrane an
Probab=53.21 E-value=55 Score=28.17 Aligned_cols=32 Identities=19% Similarity=0.047 Sum_probs=23.8
Q ss_pred CceEEEecC-cc-chHHHHHHHhCCceEEEecch
Q 046167 107 EIVCIIYDE-VM-YFAEASASQLNVQSIILRTSG 138 (424)
Q Consensus 107 ~pDlvi~d~-~~-~~~~~~A~~lgiP~v~~~~~~ 138 (424)
.||+||.-. .. ..+..=|.++|||++.+..+.
T Consensus 127 ~Pdlviv~~~~~~~~ai~Ea~~l~IP~I~i~Dtn 160 (193)
T cd01425 127 LPDLVIVLDPRKEHQAIREASKLGIPVIAIVDTN 160 (193)
T ss_pred CCCEEEEeCCccchHHHHHHHHcCCCEEEEecCC
Confidence 699887743 22 566678889999999986553
No 295
>PRK05920 aromatic acid decarboxylase; Validated
Probab=52.49 E-value=20 Score=31.15 Aligned_cols=38 Identities=18% Similarity=0.240 Sum_probs=29.9
Q ss_pred ceEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCCCC
Q 046167 9 RRVVLVPSPHQGHINPMLQLGTILHSKGFSITVVHTQFN 47 (424)
Q Consensus 9 ~ril~~~~~~~GH~~p~~~la~~L~~~Gh~V~~~~~~~~ 47 (424)
+||++.-.|+.+ .+-...+.+.|++.||+|.++.++..
T Consensus 4 krIllgITGsia-a~ka~~lvr~L~~~g~~V~vi~T~~A 41 (204)
T PRK05920 4 KRIVLAITGASG-AIYGVRLLECLLAADYEVHLVISKAA 41 (204)
T ss_pred CEEEEEEeCHHH-HHHHHHHHHHHHHCCCEEEEEEChhH
Confidence 477766555444 47889999999999999999999643
No 296
>PRK08674 bifunctional phosphoglucose/phosphomannose isomerase; Validated
Probab=52.41 E-value=1e+02 Score=29.22 Aligned_cols=58 Identities=10% Similarity=0.167 Sum_probs=40.4
Q ss_pred eEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCCCCCCCCCCCCCceEEeCCCCCC
Q 046167 10 RVVLVPSPHQGHINPMLQLGTILHSKGFSITVVHTQFNSPNPSNHPEFEFQSIPDGLM 67 (424)
Q Consensus 10 ril~~~~~~~GH~~p~~~la~~L~~~Gh~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 67 (424)
+-+++...-.|...-.+..++.++++|..|..+|............+..++.+|.+..
T Consensus 79 ~dlvI~iS~SG~T~e~~~a~~~a~~~ga~vIaIT~~~~L~~~a~~~~~~~i~ip~~~~ 136 (337)
T PRK08674 79 KTLVIAVSYSGNTEETLSAVEQALKRGAKIIAITSGGKLKEMAKEHGLPVIIVPGGYQ 136 (337)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHCCCeEEEECCCchHHHHHHhcCCeEEEeCCCCc
Confidence 3455555577888889999999999999999888643222222224777888886553
No 297
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=52.16 E-value=1.3e+02 Score=24.52 Aligned_cols=35 Identities=20% Similarity=0.278 Sum_probs=31.2
Q ss_pred EEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCC
Q 046167 11 VVLVPSPHQGHINPMLQLGTILHSKGFSITVVHTQ 45 (424)
Q Consensus 11 il~~~~~~~GH~~p~~~la~~L~~~Gh~V~~~~~~ 45 (424)
+.++..++.|-..-...++..|.++|++|.++..+
T Consensus 2 i~~~G~~GsGKTt~~~~l~~~~~~~g~~v~ii~~D 36 (148)
T cd03114 2 IGITGVPGAGKSTLIDALITALRARGKRVAVLAID 36 (148)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEeC
Confidence 66777789999999999999999999999998876
No 298
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=52.14 E-value=17 Score=33.97 Aligned_cols=33 Identities=18% Similarity=0.372 Sum_probs=27.3
Q ss_pred CceEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCC
Q 046167 8 RRRVVLVPSPHQGHINPMLQLGTILHSKGFSITVVHTQ 45 (424)
Q Consensus 8 ~~ril~~~~~~~GH~~p~~~la~~L~~~Gh~V~~~~~~ 45 (424)
+|||+++-.|+.|= .+|..|.+.||+|++++..
T Consensus 5 ~m~I~IiG~GaiG~-----~lA~~L~~~g~~V~~~~r~ 37 (313)
T PRK06249 5 TPRIGIIGTGAIGG-----FYGAMLARAGFDVHFLLRS 37 (313)
T ss_pred CcEEEEECCCHHHH-----HHHHHHHHCCCeEEEEEeC
Confidence 47999997777764 5678899999999999875
No 299
>cd01977 Nitrogenase_VFe_alpha Nitrogenase_VFe_alpha -like: Nitrogenase VFe protein, alpha subunit like. This group contains proteins similar to the alpha subunits of, the VFe protein of the vanadium-dependent (V-) nitrogenase and the FeFe protein of the iron only (Fe-) nitrogenase Nitrogenase catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. In addition to V- and Fe- nitrogenases there is a molybdenum (Mo)-dependent nitrogenase which is the most widespread and best characterized of these systems. These systems consist of component 1 (VFe protein, FeFe protein or, MoFe protein respectively) and, component 2 (Fe protein). MoFe is an alpha2beta2 tetramer, V-and Fe- nitrogenases are alpha2beta2delta2 hexamers. The alpha and beta subunits of VFe and FeFe are similar to the alpha and beta subunits of MoFe. For MoFe each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha sub
Probab=51.81 E-value=51 Score=32.28 Aligned_cols=25 Identities=12% Similarity=0.097 Sum_probs=20.6
Q ss_pred CceEEEecCccchHHHHHHHhCCceEEE
Q 046167 107 EIVCIIYDEVMYFAEASASQLNVQSIIL 134 (424)
Q Consensus 107 ~pDlvi~d~~~~~~~~~A~~lgiP~v~~ 134 (424)
+||+||..... ..+|+++|||++.+
T Consensus 358 ~pdliig~s~~---~~~a~~lgip~~~~ 382 (415)
T cd01977 358 KPDIILTGPRV---GELVKKLHVPYVNI 382 (415)
T ss_pred CCCEEEecCcc---chhhhhcCCCEEec
Confidence 89999988633 36899999999976
No 300
>PRK08181 transposase; Validated
Probab=51.52 E-value=78 Score=28.94 Aligned_cols=36 Identities=19% Similarity=0.360 Sum_probs=26.7
Q ss_pred ceEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeC
Q 046167 9 RRVVLVPSPHQGHINPMLQLGTILHSKGFSITVVHT 44 (424)
Q Consensus 9 ~ril~~~~~~~GH~~p~~~la~~L~~~Gh~V~~~~~ 44 (424)
..++|+..+|.|-..=..++|.++.++|+.|.|++.
T Consensus 107 ~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~~ 142 (269)
T PRK08181 107 ANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTRT 142 (269)
T ss_pred ceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeeeH
Confidence 457777777777777777788888888888877754
No 301
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=51.40 E-value=77 Score=28.08 Aligned_cols=35 Identities=14% Similarity=0.322 Sum_probs=28.9
Q ss_pred EEEEcCCCccChHHHHHHHHHHHhC-CCeEEEEeCC
Q 046167 11 VVLVPSPHQGHINPMLQLGTILHSK-GFSITVVHTQ 45 (424)
Q Consensus 11 il~~~~~~~GH~~p~~~la~~L~~~-Gh~V~~~~~~ 45 (424)
+++...++.|=..=.+.++..++.+ |+.|.|++.+
T Consensus 16 ~lI~G~~G~GKT~~~~~~~~~~~~~~g~~vly~s~E 51 (242)
T cd00984 16 IIIAARPSMGKTAFALNIAENIAKKQGKPVLFFSLE 51 (242)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHHhCCCceEEEeCC
Confidence 3555566889988888998888887 9999999986
No 302
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=51.14 E-value=78 Score=31.02 Aligned_cols=36 Identities=14% Similarity=0.255 Sum_probs=29.9
Q ss_pred eEEEEcCCCccChHHHHHHHHHHH-hCCCeEEEEeCC
Q 046167 10 RVVLVPSPHQGHINPMLQLGTILH-SKGFSITVVHTQ 45 (424)
Q Consensus 10 ril~~~~~~~GH~~p~~~la~~L~-~~Gh~V~~~~~~ 45 (424)
=+++...|+.|-..=.+.+|..++ +.|+.|.|++.+
T Consensus 196 liviag~pg~GKT~~al~ia~~~a~~~g~~v~~fSlE 232 (421)
T TIGR03600 196 LIVIGARPSMGKTTLALNIAENVALREGKPVLFFSLE 232 (421)
T ss_pred eEEEEeCCCCCHHHHHHHHHHHHHHhCCCcEEEEECC
Confidence 346666779999999999998887 679999999876
No 303
>PF09001 DUF1890: Domain of unknown function (DUF1890); InterPro: IPR012033 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. The structure of the Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) protein has been determined but no evidence as to the function is available yet.; PDB: 1KJN_B.
Probab=51.10 E-value=18 Score=28.97 Aligned_cols=26 Identities=27% Similarity=0.335 Sum_probs=21.1
Q ss_pred cChHHHHHHHHHHHhCCCeEEEEeCC
Q 046167 20 GHINPMLQLGTILHSKGFSITVVHTQ 45 (424)
Q Consensus 20 GH~~p~~~la~~L~~~Gh~V~~~~~~ 45 (424)
-.+--++-++..|+++||+|++++++
T Consensus 11 vq~p~alYl~~~Lk~~G~~v~Va~np 36 (139)
T PF09001_consen 11 VQTPSALYLSYKLKKKGFEVVVAGNP 36 (139)
T ss_dssp THHHHHHHHHHHHHCTTEEEEEEE-H
T ss_pred chhHHHHHHHHHHHhcCCeEEEecCH
Confidence 44455778999999999999999986
No 304
>PF02571 CbiJ: Precorrin-6x reductase CbiJ/CobK; InterPro: IPR003723 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CobK and CbiJ precorrin-6x reductase (1.3.1.54 from EC). In the aerobic pathway, CobK catalyses the reduction of the macrocycle of precorrin-6X to produce precorrin-6Y; while in the anaerobic pathway CbiJ catalyses the reduction of the macrocycle of cobalt-precorrin-6X into cobalt-precorrin-6Y [, ].; GO: 0016994 precorrin-6A reductase activity, 0009236 cobalamin biosynthetic process, 0055114 oxidation-reduction process
Probab=50.79 E-value=1.1e+02 Score=27.70 Aligned_cols=33 Identities=12% Similarity=0.227 Sum_probs=23.0
Q ss_pred hhhccccccccccc--cchh---hHHHhhhcCCceeec
Q 046167 309 EVLSHVAVGGFWSH--CGWN---STLESICEGVPMICM 341 (424)
Q Consensus 309 ~ll~~~~~~~~i~h--gG~~---t~~eal~~GvP~v~~ 341 (424)
.++++-.++++||- ||.| -+..|...|+|+|++
T Consensus 188 al~~~~~i~~lVtK~SG~~g~~eKi~AA~~lgi~vivI 225 (249)
T PF02571_consen 188 ALFRQYGIDVLVTKESGGSGFDEKIEAARELGIPVIVI 225 (249)
T ss_pred HHHHHcCCCEEEEcCCCchhhHHHHHHHHHcCCeEEEE
Confidence 37777777778875 4442 345678888888876
No 305
>PRK06395 phosphoribosylamine--glycine ligase; Provisional
Probab=50.73 E-value=94 Score=30.67 Aligned_cols=31 Identities=19% Similarity=0.214 Sum_probs=26.0
Q ss_pred ceEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeC
Q 046167 9 RRVVLVPSPHQGHINPMLQLGTILHSKGFSITVVHT 44 (424)
Q Consensus 9 ~ril~~~~~~~GH~~p~~~la~~L~~~Gh~V~~~~~ 44 (424)
||||++..++..| +|+.+|++.|++|.++-.
T Consensus 3 ~kVLvlG~G~re~-----al~~~l~~~g~~v~~~~~ 33 (435)
T PRK06395 3 MKVMLVGSGGRED-----AIARAIKRSGAILFSVIG 33 (435)
T ss_pred eEEEEECCcHHHH-----HHHHHHHhCCCeEEEEEC
Confidence 5999998888877 789999999988888744
No 306
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=50.52 E-value=33 Score=27.60 Aligned_cols=37 Identities=16% Similarity=0.162 Sum_probs=34.0
Q ss_pred ceEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCC
Q 046167 9 RRVVLVPSPHQGHINPMLQLGTILHSKGFSITVVHTQ 45 (424)
Q Consensus 9 ~ril~~~~~~~GH~~p~~~la~~L~~~Gh~V~~~~~~ 45 (424)
.+|++.+.++.+|-.----++..|...|++|..++..
T Consensus 2 ~~vvigtv~~D~HdiGk~iv~~~l~~~GfeVi~LG~~ 38 (134)
T TIGR01501 2 KTIVLGVIGSDCHAVGNKILDHAFTNAGFNVVNLGVL 38 (134)
T ss_pred CeEEEEEecCChhhHhHHHHHHHHHHCCCEEEECCCC
Confidence 5899999999999999988999999999999999875
No 307
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=50.49 E-value=85 Score=28.85 Aligned_cols=34 Identities=18% Similarity=0.258 Sum_probs=28.7
Q ss_pred ceEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCCCC
Q 046167 9 RRVVLVPSPHQGHINPMLQLGTILHSKGFSITVVHTQFN 47 (424)
Q Consensus 9 ~ril~~~~~~~GH~~p~~~la~~L~~~Gh~V~~~~~~~~ 47 (424)
++|+++-.|..|. .+|+.|+++||.|.++..+..
T Consensus 4 ~~v~IvG~GliG~-----s~a~~l~~~g~~v~i~g~d~~ 37 (279)
T COG0287 4 MKVGIVGLGLMGG-----SLARALKEAGLVVRIIGRDRS 37 (279)
T ss_pred cEEEEECCchHHH-----HHHHHHHHcCCeEEEEeecCc
Confidence 5888888887776 589999999999999988643
No 308
>PRK11823 DNA repair protein RadA; Provisional
Probab=49.50 E-value=2.2e+02 Score=28.21 Aligned_cols=36 Identities=22% Similarity=0.274 Sum_probs=30.3
Q ss_pred eEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCC
Q 046167 10 RVVLVPSPHQGHINPMLQLGTILHSKGFSITVVHTQ 45 (424)
Q Consensus 10 ril~~~~~~~GH~~p~~~la~~L~~~Gh~V~~~~~~ 45 (424)
-+++...|+.|-..=++.++..+.++|++|.|++..
T Consensus 82 ~~lI~G~pG~GKTtL~lq~a~~~a~~g~~vlYvs~E 117 (446)
T PRK11823 82 VVLIGGDPGIGKSTLLLQVAARLAAAGGKVLYVSGE 117 (446)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEcc
Confidence 345666778899999999999999899999999875
No 309
>PRK12815 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=49.18 E-value=1.8e+02 Score=32.53 Aligned_cols=38 Identities=16% Similarity=0.303 Sum_probs=29.3
Q ss_pred CceEEEEcCCCc--cCh----HHHHHHHHHHHhCCCeEEEEeCC
Q 046167 8 RRRVVLVPSPHQ--GHI----NPMLQLGTILHSKGFSITVVHTQ 45 (424)
Q Consensus 8 ~~ril~~~~~~~--GH~----~p~~~la~~L~~~Gh~V~~~~~~ 45 (424)
-+|||++..|.. |+. +.-..++++|++.|++|.++.+.
T Consensus 7 ~~kvlviG~G~~~igq~~E~d~sg~q~~~aL~e~G~~vi~v~~n 50 (1068)
T PRK12815 7 IQKILVIGSGPIVIGQAAEFDYSGTQACLALKEEGYQVVLVNPN 50 (1068)
T ss_pred CCEEEEECCCcchhcchhhhhhHHHHHHHHHHHcCCEEEEEeCC
Confidence 368888887643 543 35678999999999999999764
No 310
>cd02069 methionine_synthase_B12_BD B12 binding domain of methionine synthase. This domain binds methylcobalamin, which it uses as an intermediate methyl carrier from methyltetrahydrofolate (CH3H4folate) to homocysteine (Hcy).
Probab=49.05 E-value=31 Score=30.24 Aligned_cols=38 Identities=18% Similarity=0.267 Sum_probs=35.3
Q ss_pred CceEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCC
Q 046167 8 RRRVVLVPSPHQGHINPMLQLGTILHSKGFSITVVHTQ 45 (424)
Q Consensus 8 ~~ril~~~~~~~GH~~p~~~la~~L~~~Gh~V~~~~~~ 45 (424)
+.||++.+.++..|-....=++..|..+|++|.+++..
T Consensus 88 ~~~vvl~t~~gd~HdiG~~iv~~~l~~~G~~Vi~LG~~ 125 (213)
T cd02069 88 KGKIVLATVKGDVHDIGKNLVGVILSNNGYEVIDLGVM 125 (213)
T ss_pred CCeEEEEeCCCchhHHHHHHHHHHHHhCCCEEEECCCC
Confidence 46999999999999999999999999999999999875
No 311
>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4.1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....
Probab=48.99 E-value=1.8e+02 Score=25.19 Aligned_cols=110 Identities=16% Similarity=0.037 Sum_probs=63.6
Q ss_pred HHHHHHhhcCCCCCceEEEecCccchHHHHHHHhCCceEEEecchHHHHHHHHhhhcccccCCCCCChhHHHHHHHhhhc
Q 046167 94 WLVQMIKEQQPGDEIVCIIYDEVMYFAEASASQLNVQSIILRTSGAVTVVARLVLFQLKEEGYNPLKESYVQLINNAYSA 173 (424)
Q Consensus 94 ~~~~~~~~~~~~~~pDlvi~d~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~ 173 (424)
.++...+. +.+++++-.+.......|++.|+|++.=..++.--.....
T Consensus 72 ~a~~a~~a-----GA~FivSP~~~~~v~~~~~~~~i~~iPG~~TptEi~~A~~--------------------------- 119 (196)
T PF01081_consen 72 QAEAAIAA-----GAQFIVSPGFDPEVIEYAREYGIPYIPGVMTPTEIMQALE--------------------------- 119 (196)
T ss_dssp HHHHHHHH-----T-SEEEESS--HHHHHHHHHHTSEEEEEESSHHHHHHHHH---------------------------
T ss_pred HHHHHHHc-----CCCEEECCCCCHHHHHHHHHcCCcccCCcCCHHHHHHHHH---------------------------
Confidence 45555555 8999999988899999999999999975555433322221
Q ss_pred cCCceEEecChhhhh-HHHHHHHHhccC-CCeeeecccccCCCCCCCCCcccccccccccccCCCCeEEEEEeCCcccCC
Q 046167 174 RTSSAVISNTIYCLE-ESVLSQLQQYFK-VPNFPIGPLHKFAPSSNGSLLKEDTSCISWLNNQSPKSVIYVSLGSVASMD 251 (424)
Q Consensus 174 ~~~~~~~~~~~~~l~-~~~~~~~~~~~~-~~~~~vGp~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~I~vs~Gs~~~~~ 251 (424)
...+.+-+---..+. +.++..+...+| .++.++|.+...+ +.+|++.. .+.+..||... +
T Consensus 120 ~G~~~vK~FPA~~~GG~~~ik~l~~p~p~~~~~ptGGV~~~N-------------~~~~l~ag----~~~vg~Gs~L~-~ 181 (196)
T PF01081_consen 120 AGADIVKLFPAGALGGPSYIKALRGPFPDLPFMPTGGVNPDN-------------LAEYLKAG----AVAVGGGSWLF-P 181 (196)
T ss_dssp TT-SEEEETTTTTTTHHHHHHHHHTTTTT-EEEEBSS--TTT-------------HHHHHTST----TBSEEEESGGG-S
T ss_pred CCCCEEEEecchhcCcHHHHHHHhccCCCCeEEEcCCCCHHH-------------HHHHHhCC----CEEEEECchhc-C
Confidence 122222222222233 566666666564 2477888877542 67898843 46677777664 4
Q ss_pred HH
Q 046167 252 KK 253 (424)
Q Consensus 252 ~~ 253 (424)
.+
T Consensus 182 ~~ 183 (196)
T PF01081_consen 182 KD 183 (196)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 312
>cd02034 CooC The accessory protein CooC, which contains a nucleotide-binding domain (P-loop) near the N-terminus, participates in the maturation of the nickel center of carbon monoxide dehydrogenase (CODH). CODH from Rhodospirillum rubrum catalyzes the reversible oxidation of CO to CO2. CODH contains a nickel-iron-sulfur cluster (C-center) and an iron-sulfur cluster (B-center). CO oxidation occurs at the C-center. Three accessory proteins encoded by cooCTJ genes are involved in nickel incorporation into a nickel site. CooC functions as a nickel insertase that mobilizes nickel to apoCODH using energy released from ATP hydrolysis. CooC is a homodimer and has NTPase activities. Mutation at the P-loop abolishs its function.
Probab=48.91 E-value=44 Score=26.02 Aligned_cols=37 Identities=14% Similarity=0.188 Sum_probs=33.3
Q ss_pred eEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCCC
Q 046167 10 RVVLVPSPHQGHINPMLQLGTILHSKGFSITVVHTQF 46 (424)
Q Consensus 10 ril~~~~~~~GH~~p~~~la~~L~~~Gh~V~~~~~~~ 46 (424)
||++...++.|-..-...+++.|+++|.+|.++-.+.
T Consensus 1 ~i~~~GkgG~GKTt~a~~la~~l~~~g~~V~~id~D~ 37 (116)
T cd02034 1 KIAITGKGGVGKTTIAALLARYLAEKGKPVLAIDADP 37 (116)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEECCc
Confidence 4788888999999999999999999999999998865
No 313
>TIGR02113 coaC_strep phosphopantothenoylcysteine decarboxylase, streptococcal. In most bacteria, a single bifunctional protein catalyses phosphopantothenoylcysteine decarboxylase and phosphopantothenate--cysteine ligase activities, sequential steps in coenzyme A biosynthesis (see TIGR00521). These activities reside in separate proteins encoded by tandem genes in some bacterial lineages. This model describes proteins from the genera Streptococcus and Enterococcus homologous to the N-terminal region of TIGR00521, corresponding to phosphopantothenoylcysteine decarboxylase activity.
Probab=48.84 E-value=24 Score=29.96 Aligned_cols=36 Identities=22% Similarity=0.297 Sum_probs=27.7
Q ss_pred eEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCCC
Q 046167 10 RVVLVPSPHQGHINPMLQLGTILHSKGFSITVVHTQF 46 (424)
Q Consensus 10 ril~~~~~~~GH~~p~~~la~~L~~~Gh~V~~~~~~~ 46 (424)
||++.-.|+. ..+-...+.+.|+++|++|.++.++.
T Consensus 2 ~I~lgvtGs~-~a~~~~~ll~~L~~~g~~V~vi~T~~ 37 (177)
T TIGR02113 2 KILLAVTGSI-AAYKAADLTSQLTKLGYDVTVLMTQA 37 (177)
T ss_pred EEEEEEcCHH-HHHHHHHHHHHHHHCCCEEEEEEChH
Confidence 6666555544 45566799999999999999999863
No 314
>COG1090 Predicted nucleoside-diphosphate sugar epimerase [General function prediction only]
Probab=48.83 E-value=79 Score=28.91 Aligned_cols=23 Identities=17% Similarity=0.232 Sum_probs=18.8
Q ss_pred HHHHHHHHhCCCeEEEEeCCCCC
Q 046167 26 LQLGTILHSKGFSITVVHTQFNS 48 (424)
Q Consensus 26 ~~la~~L~~~Gh~V~~~~~~~~~ 48 (424)
.+|..+|.+.||+|++++.....
T Consensus 12 ~~L~~~L~~~gh~v~iltR~~~~ 34 (297)
T COG1090 12 RALTARLRKGGHQVTILTRRPPK 34 (297)
T ss_pred HHHHHHHHhCCCeEEEEEcCCcc
Confidence 36788999999999999986433
No 315
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=48.73 E-value=3.6e+02 Score=28.70 Aligned_cols=39 Identities=8% Similarity=0.307 Sum_probs=29.8
Q ss_pred CceEEEEcC--CCccChHHHHHHHHHHHhCCCeEEEEeCCC
Q 046167 8 RRRVVLVPS--PHQGHINPMLQLGTILHSKGFSITVVHTQF 46 (424)
Q Consensus 8 ~~ril~~~~--~~~GH~~p~~~la~~L~~~Gh~V~~~~~~~ 46 (424)
+.|++++++ |+.|-..-...||..|+..|++|.++=.+.
T Consensus 530 ~~kvI~vtS~~~g~GKTtva~nLA~~la~~G~rVLlID~D~ 570 (726)
T PRK09841 530 ENNILMITGATPDSGKTFVSSTLAAVIAQSDQKVLFIDADL 570 (726)
T ss_pred CCeEEEEecCCCCCCHHHHHHHHHHHHHhCCCeEEEEeCCC
Confidence 345554443 466888888899999999999999997653
No 316
>PF07355 GRDB: Glycine/sarcosine/betaine reductase selenoprotein B (GRDB); InterPro: IPR022787 This entry represents selenoprotein B of glycine reductase, sarcosine reductase, betaine reductase, D-proline reductase, and perhaps others. All members are expected to contain an internal UGA codon, encoding selenocysteine, which may be misinterpreted as a stop codon. ; GO: 0030699 glycine reductase activity, 0050485 oxidoreductase activity, acting on X-H and Y-H to form an X-Y bond, with a disulfide as acceptor, 0055114 oxidation-reduction process, 0030700 glycine reductase complex
Probab=48.71 E-value=28 Score=32.78 Aligned_cols=22 Identities=18% Similarity=0.397 Sum_probs=17.6
Q ss_pred cccccchhhHHHhhhcCCceeecCc
Q 046167 319 FWSHCGWNSTLESICEGVPMICMPF 343 (424)
Q Consensus 319 ~i~hgG~~t~~eal~~GvP~v~~P~ 343 (424)
.++|||+.... +..-|-.++|.
T Consensus 272 ~~~HgGYD~~~---an~D~N~v~Pl 293 (349)
T PF07355_consen 272 MTIHGGYDPAY---ANEDPNRVFPL 293 (349)
T ss_pred EeeccccChhH---hccCCCeeeeH
Confidence 89999987654 34788899987
No 317
>COG1348 NifH Nitrogenase subunit NifH (ATPase) [Inorganic ion transport and metabolism]
Probab=48.62 E-value=43 Score=29.76 Aligned_cols=41 Identities=15% Similarity=0.182 Sum_probs=36.4
Q ss_pred ceEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCCCCCC
Q 046167 9 RRVVLVPSPHQGHINPMLQLGTILHSKGFSITVVHTQFNSP 49 (424)
Q Consensus 9 ~ril~~~~~~~GH~~p~~~la~~L~~~Gh~V~~~~~~~~~~ 49 (424)
++|.++--++.|--.-...++.+|++.||+|..++.++...
T Consensus 2 r~iAiYGKGGIGKSTts~N~aAAla~~GkkVl~vGCDPKaD 42 (278)
T COG1348 2 RQIAIYGKGGIGKSTTSQNLAAALAELGKKVLIVGCDPKAD 42 (278)
T ss_pred ceEEEecCCCcCcchhHHHHHHHHHHcCCeEEEEcCCCCcc
Confidence 48999999999999999999999999999999998864443
No 318
>TIGR00421 ubiX_pad polyprenyl P-hydroxybenzoate and phenylacrylic acid decarboxylases. In E.coli, the protein UbiX (3-octaprenyl-4-hydroxybenzoate carboxy-lyase) has been shown to be involved in the third step of ubiquinone biosynthesis. It catalyzes the reaction [3-octaprenyl-4-hydroxybenzoate = 2-octaprenylphenol + CO2]. The knockout of the homologous protein in yeast confers sensitivity to phenylacrylic acid. Members are not restricted to ubiquinone-synthesizing species. This family represents a distinct clade within the flavoprotein family of Pfam model pfam02441.
Probab=48.60 E-value=20 Score=30.58 Aligned_cols=36 Identities=19% Similarity=0.327 Sum_probs=26.9
Q ss_pred eEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCCC
Q 046167 10 RVVLVPSPHQGHINPMLQLGTILHSKGFSITVVHTQF 46 (424)
Q Consensus 10 ril~~~~~~~GH~~p~~~la~~L~~~Gh~V~~~~~~~ 46 (424)
||++.-.|+.|- +-...+.+.|+++|++|.++.++.
T Consensus 1 ~illgvtGsiaa-~ka~~lir~L~~~g~~V~vv~T~~ 36 (181)
T TIGR00421 1 RIVVAMTGASGV-IYGIRLLEVLKEAGVEVHLVISDW 36 (181)
T ss_pred CEEEEEECHHHH-HHHHHHHHHHHHCCCEEEEEECcc
Confidence 355554545554 555889999999999999999963
No 319
>PF00142 Fer4_NifH: 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family; InterPro: IPR000392 This entry represents members of the NifH/BchL/ChlL family. Nitrogen fixing bacteria possess a nitrogenase enzyme complex that catalyses the reduction of molecular nitrogen to ammonia [, , ]. The nitrogenase enzyme complex consists of two components: Component I is nitrogenase MoFe protein or dinitrogenase, which contains 2 molecules each of 2 non-identical subunits. Component II is nitrogenase Fe protein or dinitrogenase reductase, which is a homodimer. The monomer is encoded by the nifH gene []. Component II has 2 ATP-binding domains and one 4Fe-4S cluster per homodimer: it supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component I for the reduction of molecular nitrogen to ammonia []. There are a number of conserved regions in the sequence of these proteins: in the N-terminal section there is an ATP-binding site motif 'A' (P-loop) IPR001687 from INTERPRO and in the central section there are two conserved cysteines which have been shown, in nifH, to be the ligands of the 4Fe-4S cluster. Protochlorophyllide reductase is involved in light-independent chlorophyll biosynthesis. The light-independent reaction uses Mg-ATP and reduced ferredoxin to reduce ring D of protochlorophyllide (Pchlide) to form chlorophyllide a (Chlide). This enzyme complex is composed of three subunits: ChlL, ChlN and ChlB. ChlL is present as a homodimer, and binds one 4Fe-4S cluster per dimer. The conserved domains, including the ATP-binding motif and the Fe-S binding motif found in the three subunits, are similar to those in nitrogenases []. ; GO: 0005524 ATP binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1CP2_A 2AFI_F 1N2C_F 1FP6_C 2AFK_G 1M34_M 1XD8_A 1NIP_A 1M1Y_N 1G21_H ....
Probab=48.57 E-value=37 Score=30.81 Aligned_cols=42 Identities=12% Similarity=0.162 Sum_probs=35.0
Q ss_pred ceEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCCCCCCC
Q 046167 9 RRVVLVPSPHQGHINPMLQLGTILHSKGFSITVVHTQFNSPN 50 (424)
Q Consensus 9 ~ril~~~~~~~GH~~p~~~la~~L~~~Gh~V~~~~~~~~~~~ 50 (424)
+||.|+--++.|--.-...|+.+|++.|++|..++.++....
T Consensus 1 r~IAiYGKGGIGKST~~~Nlsaala~~G~kVl~iGCDPK~DS 42 (273)
T PF00142_consen 1 RKIAIYGKGGIGKSTTASNLSAALAEMGKKVLQIGCDPKADS 42 (273)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESSSSTS
T ss_pred CeEEEEcCCCcccChhhhHHHHHHHhccceeeEecccCCCcc
Confidence 489999999999999999999999999999999998644433
No 320
>TIGR01284 alt_nitrog_alph nitrogenase alpha chain. This model represents the alpha chains of various forms of the nitrogen-fixing enzyme nitrogenase: vanadium-iron, iron-iron, and molybdenum-iron. Most examples of NifD, the molybdenum-iron type nitrogenase alpha chain, are excluded from this model and described instead by equivalog model TIGR01282. It appears by phylogenetic and UPGMA trees that this model represents a distinct clade of NifD homologs, in which arose several molybdenum-independent forms.
Probab=48.50 E-value=1.3e+02 Score=29.98 Aligned_cols=26 Identities=19% Similarity=0.068 Sum_probs=21.5
Q ss_pred CceEEEecCccchHHHHHHHhCCceEEEe
Q 046167 107 EIVCIIYDEVMYFAEASASQLNVQSIILR 135 (424)
Q Consensus 107 ~pDlvi~d~~~~~~~~~A~~lgiP~v~~~ 135 (424)
+||++|... ....+|+++|||++.+.
T Consensus 395 ~pDllig~~---~~~~~a~k~gip~~~~~ 420 (457)
T TIGR01284 395 KPDIILTGI---REGELAKKLGVPYINIH 420 (457)
T ss_pred CCCEEEecC---CcchhhhhcCCCEEEcc
Confidence 899999885 34679999999999763
No 321
>PRK10916 ADP-heptose:LPS heptosyltransferase II; Provisional
Probab=48.27 E-value=1.4e+02 Score=28.24 Aligned_cols=101 Identities=10% Similarity=0.095 Sum_probs=55.0
Q ss_pred eEEEEcCCCcc--Ch---HHHHHHHHHHHhCCCeEEEEeCCCCCCCCCCCCCceEEeCCCCCCCCccccccHHHHHHHHH
Q 046167 10 RVVLVPSPHQG--HI---NPMLQLGTILHSKGFSITVVHTQFNSPNPSNHPEFEFQSIPDGLMDVNISARNLVDSILLLN 84 (424)
Q Consensus 10 ril~~~~~~~G--H~---~p~~~la~~L~~~Gh~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (424)
-|+|.|+.+.| =- ..+.+|++.|.++|++|.+++++...+.... +.- ..+.... .. ..
T Consensus 182 ~i~i~pga~~~~~K~Wp~e~~a~l~~~l~~~~~~vvl~Gg~~e~~~~~~---i~~-~~~~~~~------~~-------~~ 244 (348)
T PRK10916 182 IIGFCPGAEFGPAKRWPHYHYAELAQQLIDEGYQVVLFGSAKDHEAGNE---ILA-ALNTEQQ------AW-------CR 244 (348)
T ss_pred EEEEeCCCCCccccCCCHHHHHHHHHHHHHCCCeEEEEeCHHhHHHHHH---HHH-hcccccc------cc-------ee
Confidence 45666643322 11 2478899999888999988876422211000 000 0000000 00 00
Q ss_pred Hhc-hhHHHHHHHHHHhhcCCCCCceEEEecCccchHHHHHHHhCCceEEEec
Q 046167 85 ENC-REPFRNWLVQMIKEQQPGDEIVCIIYDEVMYFAEASASQLNVQSIILRT 136 (424)
Q Consensus 85 ~~~-~~~~~~~~~~~~~~~~~~~~pDlvi~d~~~~~~~~~A~~lgiP~v~~~~ 136 (424)
..+ ...+.++..-+. +.|++|+.- .+..++|..+|+|++.+..
T Consensus 245 ~l~g~~sL~el~ali~-------~a~l~I~nD--TGp~HlAaA~g~P~valfG 288 (348)
T PRK10916 245 NLAGETQLEQAVILIA-------ACKAIVTND--SGLMHVAAALNRPLVALYG 288 (348)
T ss_pred eccCCCCHHHHHHHHH-------hCCEEEecC--ChHHHHHHHhCCCEEEEEC
Confidence 001 113455555554 689999864 5777899999999998865
No 322
>PRK02910 light-independent protochlorophyllide reductase subunit B; Provisional
Probab=48.18 E-value=1.4e+02 Score=30.31 Aligned_cols=26 Identities=12% Similarity=0.224 Sum_probs=21.9
Q ss_pred CceEEEecCccchHHHHHHHhCCceEEEe
Q 046167 107 EIVCIIYDEVMYFAEASASQLNVQSIILR 135 (424)
Q Consensus 107 ~pDlvi~d~~~~~~~~~A~~lgiP~v~~~ 135 (424)
+||+||.+. ....+|+++|||++.++
T Consensus 362 ~PdliiG~~---~er~~a~~lgiP~~~i~ 387 (519)
T PRK02910 362 APELVLGTQ---MERHSAKRLGIPCAVIS 387 (519)
T ss_pred CCCEEEEcc---hHHHHHHHcCCCEEEec
Confidence 899999875 55678999999998775
No 323
>PLN02735 carbamoyl-phosphate synthase
Probab=47.70 E-value=1.7e+02 Score=32.85 Aligned_cols=38 Identities=11% Similarity=0.309 Sum_probs=29.8
Q ss_pred ceEEEEcCCC--ccCh----HHHHHHHHHHHhCCCeEEEEeCCC
Q 046167 9 RRVVLVPSPH--QGHI----NPMLQLGTILHSKGFSITVVHTQF 46 (424)
Q Consensus 9 ~ril~~~~~~--~GH~----~p~~~la~~L~~~Gh~V~~~~~~~ 46 (424)
+|||++..|. .|+. +.-..++++|++.|++|..+-+.+
T Consensus 24 kkVLiiGsG~~~igqa~e~d~SG~q~~kaLke~G~~Vi~vd~np 67 (1102)
T PLN02735 24 KKIMILGAGPIVIGQACEFDYSGTQACKALKEEGYEVVLINSNP 67 (1102)
T ss_pred CEEEEECCCccccccceeecchHHHHHHHHHHcCCEEEEEeCCc
Confidence 6898888775 3544 457889999999999999997643
No 324
>PF02572 CobA_CobO_BtuR: ATP:corrinoid adenosyltransferase BtuR/CobO/CobP; InterPro: IPR003724 ATP:cob(I)alamin (or ATP:corrinoid) adenosyltransferases (2.5.1.17 from EC), catalyse the conversion of cobalamin (vitamin B12) into its coenzyme form, adenosylcobalamin (coenzyme B12) []. Adenosylcobalamin (AdoCbl) is required for the ativity of certain enzymes. AdoCbl contains an adenosyl moiety liganded to the cobalt ion of cobalamin via a covalent Co-C bond, and its synthesis is unique to certain prokaryotes. ATP:cob(I)alamin adenosyltransferases are classed into three groups: CobA-type [], EutT-type [] and PduO-type []. Each of the three enzyme types appears to be specialised for particular AdoCbl-dependent enzymes or for the de novo synthesis AdoCbl. PduO and EutT are distantly related, sharing short conserved motifs, while CobA is evolutionarily unrelated and is an example of convergent evolution. This entry represents the ATP:cob(I)alamin adenosyltransferases CobA (Salmonella typhimurium), CobO (Pseudomonas denitrificans), and ButR (Escherichia coli). There is a high degree of sequence identity between these proteins []. CobA is responsible for attaching the adenosyl moiety from ATP to the cobalt ion of the corrin ring, necessary for the convertion of cobalamin to adenosylcobalamin [, ]. ; GO: 0005524 ATP binding, 0008817 cob(I)yrinic acid a,c-diamide adenosyltransferase activity, 0009236 cobalamin biosynthetic process; PDB: 1G64_A 1G5T_A 1G5R_A.
Probab=47.29 E-value=98 Score=26.12 Aligned_cols=95 Identities=17% Similarity=0.209 Sum_probs=43.6
Q ss_pred ceEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCCCCCCC--------CCCCCCceEEeCCCCCCCCccccccHHHHH
Q 046167 9 RRVVLVPSPHQGHINPMLQLGTILHSKGFSITVVHTQFNSPN--------PSNHPEFEFQSIPDGLMDVNISARNLVDSI 80 (424)
Q Consensus 9 ~ril~~~~~~~GH~~p~~~la~~L~~~Gh~V~~~~~~~~~~~--------~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 80 (424)
-.|.+++..+-|-....+.+|-+-.-+|.+|.++= |.+-. ....+++++.....++........ .+
T Consensus 4 G~i~vytG~GKGKTTAAlGlalRA~G~G~rV~ivQ--FlKg~~~~GE~~~l~~l~~~~~~~~g~~f~~~~~~~~--~~-- 77 (172)
T PF02572_consen 4 GLIQVYTGDGKGKTTAALGLALRAAGHGMRVLIVQ--FLKGGRYSGELKALKKLPNVEIERFGKGFVWRMNEEE--ED-- 77 (172)
T ss_dssp --EEEEESSSS-HHHHHHHHHHHHHCTT--EEEEE--SS--SS--HHHHHHGGGT--EEEE--TT----GGGHH--HH--
T ss_pred cEEEEEeCCCCCchHHHHHHHHHHHhCCCEEEEEE--EecCCCCcCHHHHHHhCCeEEEEEcCCcccccCCCcH--HH--
Confidence 46788888888988766666666666666776663 33321 233356788877765443321111 11
Q ss_pred HHHHHhchhHHHHHHHHHHhhcCCCCCceEEEecCcc
Q 046167 81 LLLNENCREPFRNWLVQMIKEQQPGDEIVCIIYDEVM 117 (424)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~pDlvi~d~~~ 117 (424)
...+...+....+.+... .+|+||-|-..
T Consensus 78 ---~~~~~~~~~~a~~~i~~~-----~~dlvILDEi~ 106 (172)
T PF02572_consen 78 ---RAAAREGLEEAKEAISSG-----EYDLVILDEIN 106 (172)
T ss_dssp ---HHHHHHHHHHHHHHTT-T-----T-SEEEEETHH
T ss_pred ---HHHHHHHHHHHHHHHhCC-----CCCEEEEcchH
Confidence 222333333333333322 79999999743
No 325
>PRK08939 primosomal protein DnaI; Reviewed
Probab=47.25 E-value=81 Score=29.46 Aligned_cols=36 Identities=22% Similarity=0.235 Sum_probs=31.3
Q ss_pred ceEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeC
Q 046167 9 RRVVLVPSPHQGHINPMLQLGTILHSKGFSITVVHT 44 (424)
Q Consensus 9 ~ril~~~~~~~GH~~p~~~la~~L~~~Gh~V~~~~~ 44 (424)
.-++++..+|.|-.+=+.++|.+|.++|..|+|+..
T Consensus 157 ~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~~ 192 (306)
T PRK08939 157 KGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLHF 192 (306)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEEH
Confidence 457777777889888899999999999999999976
No 326
>cd00672 CysRS_core catalytic core domain of cysteinyl tRNA synthetase. Cysteinyl tRNA synthetase (CysRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=47.14 E-value=38 Score=29.69 Aligned_cols=29 Identities=24% Similarity=0.442 Sum_probs=24.8
Q ss_pred CCccChHHHHH---HHHHHHhCCCeEEEEeCC
Q 046167 17 PHQGHINPMLQ---LGTILHSKGFSITVVHTQ 45 (424)
Q Consensus 17 ~~~GH~~p~~~---la~~L~~~Gh~V~~~~~~ 45 (424)
+..||+.+++. +++.|+.+|++|.++++-
T Consensus 34 ~HiGH~r~~v~~Dvl~R~lr~~G~~V~~~~g~ 65 (213)
T cd00672 34 AHIGHARTYVVFDVLRRYLEDLGYKVRYVQNI 65 (213)
T ss_pred cccccchhHHHHHHHHHHHHhcCCeeEEEeec
Confidence 46699998875 799999999999999884
No 327
>PRK04940 hypothetical protein; Provisional
Probab=46.78 E-value=50 Score=28.09 Aligned_cols=33 Identities=18% Similarity=0.102 Sum_probs=27.3
Q ss_pred CceEEEecCcc-chHHHHHHHhCCceEEEecchH
Q 046167 107 EIVCIIYDEVM-YFAEASASQLNVQSIILRTSGA 139 (424)
Q Consensus 107 ~pDlvi~d~~~-~~~~~~A~~lgiP~v~~~~~~~ 139 (424)
+++++|...+. +++..+|+++|+|.|.+.+...
T Consensus 60 ~~~~liGSSLGGyyA~~La~~~g~~aVLiNPAv~ 93 (180)
T PRK04940 60 ERPLICGVGLGGYWAERIGFLCGIRQVIFNPNLF 93 (180)
T ss_pred CCcEEEEeChHHHHHHHHHHHHCCCEEEECCCCC
Confidence 46788887766 8899999999999999877643
No 328
>PF00148 Oxidored_nitro: Nitrogenase component 1 type Oxidoreductase; InterPro: IPR000510 Enzymes belonging to this family include cofactor-requiring nitrogenases and protochlorophyllide reductase. The key enzymatic reactions in nitrogen fixation are catalysed by the nitrogenase complex, which has two components, the iron protein (component 2), and a component (component 1) which is either a molybdenum-iron, vanadium-iron or iron-iron protein. The enzyme (1.18.6.1 from EC) forms a hexamer of two alpha, two beta and two delta chains. Protochlorophyllide reductase (1.3.1.33 from EC) is involved in the light-dependent accumulation of chlorophyll, probably at the step of reduction of protochlorophyllide to chlorophyllide.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QH1_C 1QH8_A 1H1L_C 1QGU_A 3AEK_C 3AET_C 3AER_C 3AEU_A 3AES_C 3AEQ_C ....
Probab=46.74 E-value=1.7e+02 Score=28.26 Aligned_cols=85 Identities=20% Similarity=0.228 Sum_probs=46.7
Q ss_pred ceEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCCCCCCCCCCCCCceEEeCCCCCCCCccccccHHHHHHHHHHh--
Q 046167 9 RRVVLVPSPHQGHINPMLQLGTILHSKGFSITVVHTQFNSPNPSNHPEFEFQSIPDGLMDVNISARNLVDSILLLNEN-- 86 (424)
Q Consensus 9 ~ril~~~~~~~GH~~p~~~la~~L~~~Gh~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 86 (424)
+|+++.. +-...+.|++.|.+.|-+|..+....... ...+.+......
T Consensus 272 ~~v~i~~-----~~~~~~~l~~~L~elG~~v~~v~~~~~~~-------------------------~~~e~~~~~~~~~~ 321 (398)
T PF00148_consen 272 KRVAIYG-----DPDRALGLARFLEELGMEVVAVGCDDKSP-------------------------EDEERLRWLLEESD 321 (398)
T ss_dssp -EEEEES-----SHHHHHHHHHHHHHTT-EEEEEEESSGGH-------------------------HHHHHHHHHHHTTC
T ss_pred ceEEEEc-----CchhHHHHHHHHHHcCCeEEEEEEccCch-------------------------hHHHHHHHHhhCCC
Confidence 5777643 33667789999999999999998731110 001111111111
Q ss_pred -------chhHHHHHHHHHHhhcCCCCCceEEEecCccchHHHHHHHhCCceEEE
Q 046167 87 -------CREPFRNWLVQMIKEQQPGDEIVCIIYDEVMYFAEASASQLNVQSIIL 134 (424)
Q Consensus 87 -------~~~~~~~~~~~~~~~~~~~~~pDlvi~d~~~~~~~~~A~~lgiP~v~~ 134 (424)
-...+.+.++.. +||+++.+. .....|+++++|++.+
T Consensus 322 ~~v~~~~~~~~~~~~l~~~--------~pdl~ig~~---~~~~~a~~~~~~~~~~ 365 (398)
T PF00148_consen 322 PEVIIDPDPEEIEELLEEL--------KPDLLIGSS---HERYLAKKLGIPLIRI 365 (398)
T ss_dssp SEEEESCBHHHHHHHHHHH--------T-SEEEESH---HHHHHHHHTT--EEE-
T ss_pred cEEEeCCCHHHHHHHHHhc--------CCCEEEech---hhHHHHHHhCCCeEEE
Confidence 111233344444 899999985 3677888998888765
No 329
>COG0801 FolK 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase [Coenzyme metabolism]
Probab=46.62 E-value=45 Score=27.70 Aligned_cols=35 Identities=20% Similarity=0.151 Sum_probs=26.9
Q ss_pred EEEEEeCCcccCCHHHHHHHHHHHHhCCCCeEEEE
Q 046167 239 VIYVSLGSVASMDKKELEEMAWGLVNSKQPFLWVI 273 (424)
Q Consensus 239 ~I~vs~Gs~~~~~~~~~~~~~~a~~~~~~~~i~~~ 273 (424)
.+|+++||........++..+.++.+.+.--++.+
T Consensus 3 ~vyl~LGSNlgd~~~~l~~A~~~L~~~~~~~v~~~ 37 (160)
T COG0801 3 RVYLGLGSNLGDRLKQLRAALAALDALADIRVVAV 37 (160)
T ss_pred EEEEEecCCCCCHHHHHHHHHHHHHhCCCceEEEe
Confidence 69999999998777888888888888764323333
No 330
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=46.57 E-value=84 Score=30.27 Aligned_cols=31 Identities=23% Similarity=0.493 Sum_probs=26.0
Q ss_pred ceEEEEc-CCCccChHHHHHHHHHHHhCCCeEEEEeC
Q 046167 9 RRVVLVP-SPHQGHINPMLQLGTILHSKGFSITVVHT 44 (424)
Q Consensus 9 ~ril~~~-~~~~GH~~p~~~la~~L~~~Gh~V~~~~~ 44 (424)
++|.++- .|..|. .+|..|+++||+|+++..
T Consensus 99 ~~I~IiGG~GlmG~-----slA~~l~~~G~~V~~~d~ 130 (374)
T PRK11199 99 RPVVIVGGKGQLGR-----LFAKMLTLSGYQVRILEQ 130 (374)
T ss_pred ceEEEEcCCChhhH-----HHHHHHHHCCCeEEEeCC
Confidence 6888886 676676 689999999999999975
No 331
>TIGR03837 efp_adjacent_2 conserved hypothetical protein, PP_1857 family. This model describes a conserved hypothetical protein that typically is encoded next to the gene efp for translation elongation factor P. The function is unknown.
Probab=46.30 E-value=2e+02 Score=27.53 Aligned_cols=155 Identities=17% Similarity=0.212 Sum_probs=0.0
Q ss_pred CcccCCHHHHHHHHHHHHhCCCCeEEEEcCCCCCCCcccccCchhHHHHhc--------------CCCceeeecchhh--
Q 046167 246 SVASMDKKELEEMAWGLVNSKQPFLWVIRPRTNNAPEGIELLPKVLAEDVQ--------------ENGYIVKWAPQKE-- 309 (424)
Q Consensus 246 s~~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~--------------~nv~v~~~ip~~~-- 309 (424)
|.+.....-+..+++++++.+..+...+..+. .-..+..-.+ =.+.+.++++|..
T Consensus 186 SLF~Ye~~al~~ll~~~~~~~~pv~lLvp~Gr---------~~~~v~~~l~~~~~~~g~~~~~g~L~~~~LPf~~Q~~yD 256 (371)
T TIGR03837 186 SLFCYENAALPALLDALAQSGSPVHLLVPEGR---------ALAAVAAWLGDALLAAGDVHRRGALTVAVLPFVPQDDYD 256 (371)
T ss_pred EEEecCChhHHHHHHHHHhCCCCeEEEecCCc---------cHHHHHHHhCccccCCccccccCceEEEEcCCCChhhHH
Q ss_pred -hhccccccccccccchhhHHHhhhcCCcee--ecCcccchhhH--HHHHHhhhhcce------ecCc---ccc-hHHHH
Q 046167 310 -VLSHVAVGGFWSHCGWNSTLESICEGVPMI--CMPFFEDQKVN--ARYLSHVWGVGL------ELEH---ELE-RGAVE 374 (424)
Q Consensus 310 -ll~~~~~~~~i~hgG~~t~~eal~~GvP~v--~~P~~~DQ~~n--a~~~~~~~G~g~------~~~~---~~~-~~~L~ 374 (424)
+|-.|++ .||= |=-|+..|.-+|+|.| +.|+..|=+.- -..+.. +..++ .+.. ..+ ...+.
T Consensus 257 ~LLW~cD~-NfVR--GEDSFVRAqWAgkPfvWhIYPQeddaHl~KL~AFL~~-y~~~l~~~~~~al~~~~~awN~~~~~~ 332 (371)
T TIGR03837 257 RLLWACDL-NFVR--GEDSFVRAQWAGKPFVWHIYPQEEDAHLAKLEAFLDL-YCAGLAPEAAAALRAFWRAWNGGGALS 332 (371)
T ss_pred HHHHhChh-cEee--chhHHHHHHHcCCCceeecccCchhhHHHHHHHHHHH-HhccCChHHHHHHHHHHHHHhCCCchh
Q ss_pred HHHHHHhcccchHHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHH
Q 046167 375 KAVRKLTVDKEGEFLRQRAAQLKEEVELSTRKGGFSYNSLNELLD 419 (424)
Q Consensus 375 ~ai~~ll~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~a~~~~~~ 419 (424)
..-..+..+- +.+++.+++++..+.+. ++....+..+++
T Consensus 333 ~~W~~l~~~~--~~l~~~a~~w~~~l~~~----~dLa~~Lv~F~~ 371 (371)
T TIGR03837 333 ADWPALRAAL--PEWQQHAQAWAARLAAQ----PDLATKLVQFVA 371 (371)
T ss_pred hhHHHHHHhh--HHHHHHHHHHHHHHhhC----CCHHHHHHHHhC
No 332
>PF09334 tRNA-synt_1g: tRNA synthetases class I (M); InterPro: IPR015413 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This domain is found in methionyl and leucyl tRNA synthetases. ; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 2D5B_A 1A8H_A 1WOY_A 2D54_A 4DLP_A 2CT8_B 2CSX_A 1MED_A 1PFU_A 1PFW_A ....
Probab=45.99 E-value=15 Score=35.73 Aligned_cols=28 Identities=32% Similarity=0.587 Sum_probs=23.4
Q ss_pred CccChHHHHH---HHHHHHhCCCeEEEEeCC
Q 046167 18 HQGHINPMLQ---LGTILHSKGFSITVVHTQ 45 (424)
Q Consensus 18 ~~GH~~p~~~---la~~L~~~Gh~V~~~~~~ 45 (424)
..||++|++. +|+.++.+||+|.++|+-
T Consensus 15 HlGH~~~~l~ADv~aR~~r~~G~~v~~~tGt 45 (391)
T PF09334_consen 15 HLGHLYPYLAADVLARYLRLRGHDVLFVTGT 45 (391)
T ss_dssp BHHHHHHHHHHHHHHHHHHHTT-EEEEEEEE
T ss_pred CCChhHHHHHHHHHHHHHhhcccceeeEEec
Confidence 5599998885 799999999999999984
No 333
>PRK10422 lipopolysaccharide core biosynthesis protein; Provisional
Probab=45.64 E-value=1.7e+02 Score=27.70 Aligned_cols=87 Identities=11% Similarity=0.083 Sum_probs=49.1
Q ss_pred HHHHHHHHHHhCCCeEEEEeCCCCCCCCCCCCCceEEeCCCCCCCCccccccHHHHHHHHHH-hchhHHHHHHHHHHhhc
Q 046167 24 PMLQLGTILHSKGFSITVVHTQFNSPNPSNHPEFEFQSIPDGLMDVNISARNLVDSILLLNE-NCREPFRNWLVQMIKEQ 102 (424)
Q Consensus 24 p~~~la~~L~~~Gh~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 102 (424)
-+.+|++.|.++|++|.+++++...+... ...+ .+.... .. ... .-...+.++..-+.
T Consensus 203 ~fa~l~~~L~~~~~~vvl~ggp~e~e~~~-~~~i-----~~~~~~-----~~-------~~~l~g~~sL~el~ali~--- 261 (352)
T PRK10422 203 KFSAVIDALQARGYEVVLTSGPDKDDLAC-VNEI-----AQGCQT-----PP-------VTALAGKTTFPELGALID--- 261 (352)
T ss_pred HHHHHHHHHHHCCCeEEEEcCCChHHHHH-HHHH-----HHhcCC-----Cc-------cccccCCCCHHHHHHHHH---
Confidence 37789999988899988886632111100 0000 000000 00 000 01123555555554
Q ss_pred CCCCCceEEEecCccchHHHHHHHhCCceEEEecc
Q 046167 103 QPGDEIVCIIYDEVMYFAEASASQLNVQSIILRTS 137 (424)
Q Consensus 103 ~~~~~pDlvi~d~~~~~~~~~A~~lgiP~v~~~~~ 137 (424)
+.|++|+.- .+..++|..+|+|+|.+...
T Consensus 262 ----~a~l~v~nD--SGp~HlAaA~g~P~v~lfGp 290 (352)
T PRK10422 262 ----HAQLFIGVD--SAPAHIAAAVNTPLICLFGA 290 (352)
T ss_pred ----hCCEEEecC--CHHHHHHHHcCCCEEEEECC
Confidence 689999864 56778999999999988653
No 334
>PRK06077 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=45.19 E-value=39 Score=29.95 Aligned_cols=38 Identities=18% Similarity=0.115 Sum_probs=24.7
Q ss_pred CcccCCCCceEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeC
Q 046167 1 MEEQGQRRRRVVLVPSPHQGHINPMLQLGTILHSKGFSITVVHT 44 (424)
Q Consensus 1 ~~~m~~~~~ril~~~~~~~GH~~p~~~la~~L~~~Gh~V~~~~~ 44 (424)
|++|..+ +++++. +.|.+ -.+++++|.++|++|.+...
T Consensus 1 ~~~~~~~--~vlitG--asg~i--G~~l~~~l~~~g~~v~~~~~ 38 (252)
T PRK06077 1 MYSLKDK--VVVVTG--SGRGI--GRAIAVRLAKEGSLVVVNAK 38 (252)
T ss_pred CCCCCCc--EEEEeC--CCChH--HHHHHHHHHHCCCEEEEEeC
Confidence 5555543 554443 23333 36899999999999987654
No 335
>cd01141 TroA_d Periplasmic binding protein TroA_d. These proteins are predicted to function as initial receptors in the ABC metal ion uptake in eubacteria and archaea. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind their ligands in the cleft between these domains.
Probab=44.86 E-value=31 Score=29.17 Aligned_cols=30 Identities=10% Similarity=0.006 Sum_probs=21.1
Q ss_pred CceEEEecCccch--HHHHHHHhCCceEEEec
Q 046167 107 EIVCIIYDEVMYF--AEASASQLNVQSIILRT 136 (424)
Q Consensus 107 ~pDlvi~d~~~~~--~~~~A~~lgiP~v~~~~ 136 (424)
+||+||....... ....-+..|||++.+..
T Consensus 69 ~PDlii~~~~~~~~~~~~~l~~~gIpvv~i~~ 100 (186)
T cd01141 69 KPDLVILYGGFQAQTILDKLEQLGIPVLYVNE 100 (186)
T ss_pred CCCEEEEecCCCchhHHHHHHHcCCCEEEeCC
Confidence 8999998654322 33455678999988753
No 336
>COG2099 CobK Precorrin-6x reductase [Coenzyme metabolism]
Probab=44.81 E-value=38 Score=30.38 Aligned_cols=104 Identities=12% Similarity=0.064 Sum_probs=52.5
Q ss_pred HHHHHHHHHhCCCeEEEEeCCCCCCCCCCC---CCceEEeCCCCCCCCc-cc-cccHHHHHHHHHHhchhHHHHHHHHHH
Q 046167 25 MLQLGTILHSKGFSITVVHTQFNSPNPSNH---PEFEFQSIPDGLMDVN-IS-ARNLVDSILLLNENCREPFRNWLVQMI 99 (424)
Q Consensus 25 ~~~la~~L~~~Gh~V~~~~~~~~~~~~~~~---~g~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (424)
+-.+++.+.+.|-+|.+.++..+...+... ..+-+..+|....... .. .-.....+.+--.+....=+.+++++
T Consensus 117 ~~ea~~~~~~~~~rVflt~G~~~l~~f~~~~~~~~~~~Rvlp~~~~~~~~~~~~~p~~~Iia~~GPfs~~~n~all~q~- 195 (257)
T COG2099 117 IEEAAEAAKQLGRRVFLTTGRQNLAHFVAADAHSHVLARVLPPPDVLAKCEDLGVPPARIIAMRGPFSEEDNKALLEQY- 195 (257)
T ss_pred HHHHHHHHhccCCcEEEecCccchHHHhcCcccceEEEEEcCchHHHHHHHhcCCChhhEEEecCCcChHHHHHHHHHh-
Confidence 456777777778777777765444443322 2344455552111000 00 00000000000011111122356666
Q ss_pred hhcCCCCCceEEEecCcc-----chHHHHHHHhCCceEEEec
Q 046167 100 KEQQPGDEIVCIIYDEVM-----YFAEASASQLNVQSIILRT 136 (424)
Q Consensus 100 ~~~~~~~~pDlvi~d~~~-----~~~~~~A~~lgiP~v~~~~ 136 (424)
+.|+||+-... ..=..+|+.+|||++++.-
T Consensus 196 -------~id~vItK~SG~~Gg~~~Ki~aA~eLgi~VI~I~R 230 (257)
T COG2099 196 -------RIDVVVTKNSGGAGGTYEKIEAARELGIPVIMIER 230 (257)
T ss_pred -------CCCEEEEccCCcccCcHHHHHHHHHcCCcEEEEec
Confidence 89999995422 3345799999999998744
No 337
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=44.79 E-value=1e+02 Score=28.21 Aligned_cols=104 Identities=12% Similarity=0.162 Sum_probs=56.6
Q ss_pred eEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCCCCCCCCCCCCCceEEeCCCCCCCCccccccHHHHHHHHHHhchh
Q 046167 10 RVVLVPSPHQGHINPMLQLGTILHSKGFSITVVHTQFNSPNPSNHPEFEFQSIPDGLMDVNISARNLVDSILLLNENCRE 89 (424)
Q Consensus 10 ril~~~~~~~GH~~p~~~la~~L~~~Gh~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (424)
=|+++..|+.|-......|++.|.+.|.+|.++...... ..+ .... .. .-.+..+.
T Consensus 3 Liil~G~P~SGKTt~a~~L~~~~~~~~~~v~~i~~~~~~--~~~---------------~~y~-~~------~~Ek~~R~ 58 (270)
T PF08433_consen 3 LIILCGLPCSGKTTRAKELKKYLEEKGKEVVIISDDSLG--IDR---------------NDYA-DS------KKEKEARG 58 (270)
T ss_dssp EEEEE--TTSSHHHHHHHHHHHHHHTT--EEEE-THHHH---TT---------------SSS---G------GGHHHHHH
T ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhcCCEEEEEcccccc--cch---------------hhhh-ch------hhhHHHHH
Confidence 367788999999999999999999999999998753111 000 0000 00 01112333
Q ss_pred HHHHHHHHHHhhcCCCCCceEEEecCcc------chHHHHHHHhCCceEEEecchHHHHH
Q 046167 90 PFRNWLVQMIKEQQPGDEIVCIIYDEVM------YFAEASASQLNVQSIILRTSGAVTVV 143 (424)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~pDlvi~d~~~------~~~~~~A~~lgiP~v~~~~~~~~~~~ 143 (424)
.++..+++... +-++||.|... +-...+|+..+.++.++........+
T Consensus 59 ~l~s~v~r~ls------~~~iVI~Dd~nYiKg~RYelyclAr~~~~~~c~i~~~~~~e~~ 112 (270)
T PF08433_consen 59 SLKSAVERALS------KDTIVILDDNNYIKGMRYELYCLARAYGTTFCVIYCDCPLETC 112 (270)
T ss_dssp HHHHHHHHHHT------T-SEEEE-S---SHHHHHHHHHHHHHTT-EEEEEEEE--HHHH
T ss_pred HHHHHHHHhhc------cCeEEEEeCCchHHHHHHHHHHHHHHcCCCEEEEEECCCHHHH
Confidence 34444444432 45899998644 45557999999998887666554433
No 338
>TIGR01861 ANFD nitrogenase iron-iron protein, alpha chain. This model represents the all-iron variant of the nitrogenase component I alpha chain. Molybdenum-iron and vanadium iron forms are also found. The complete complex contains two alpha chains, two beta chains and two delta chains. The component I associates with component II also known as the iron protein which serves to provide electrons for component I.
Probab=44.60 E-value=2e+02 Score=29.16 Aligned_cols=34 Identities=18% Similarity=0.439 Sum_probs=25.1
Q ss_pred CceEEEEcCCCccChHHHHHHHHHHH-hCCCeEEEEeCCC
Q 046167 8 RRRVVLVPSPHQGHINPMLQLGTILH-SKGFSITVVHTQF 46 (424)
Q Consensus 8 ~~ril~~~~~~~GH~~p~~~la~~L~-~~Gh~V~~~~~~~ 46 (424)
.+|++++..|. -...++..|. +-|-+|+.+++.+
T Consensus 328 GKrvai~~gg~-----~~~~~~~~l~~ElGmevv~~~t~~ 362 (513)
T TIGR01861 328 GKKVCLWPGGS-----KLWHWAHVIEEEMGLKVVSVYSKF 362 (513)
T ss_pred CCEEEEECCch-----HHHHHHHHHHHhCCCEEEEEeccC
Confidence 36888877642 5667888888 5899998887753
No 339
>PRK08506 replicative DNA helicase; Provisional
Probab=44.53 E-value=1e+02 Score=30.81 Aligned_cols=36 Identities=8% Similarity=0.210 Sum_probs=30.5
Q ss_pred eEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCC
Q 046167 10 RVVLVPSPHQGHINPMLQLGTILHSKGFSITVVHTQ 45 (424)
Q Consensus 10 ril~~~~~~~GH~~p~~~la~~L~~~Gh~V~~~~~~ 45 (424)
=+++...|+.|-..=.+.+|....+.|+.|.|++-+
T Consensus 194 LivIaarpg~GKT~fal~ia~~~~~~g~~V~~fSlE 229 (472)
T PRK08506 194 LIIIAARPSMGKTTLCLNMALKALNQDKGVAFFSLE 229 (472)
T ss_pred eEEEEcCCCCChHHHHHHHHHHHHhcCCcEEEEeCc
Confidence 346666778899999999999988899999999876
No 340
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=43.70 E-value=24 Score=32.97 Aligned_cols=33 Identities=12% Similarity=0.284 Sum_probs=27.7
Q ss_pred CceEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCC
Q 046167 8 RRRVVLVPSPHQGHINPMLQLGTILHSKGFSITVVHTQ 45 (424)
Q Consensus 8 ~~ril~~~~~~~GH~~p~~~la~~L~~~Gh~V~~~~~~ 45 (424)
+|||.|+-.|..|. ++|+.|.+.||+|+++...
T Consensus 4 ~m~I~iiG~G~~G~-----~lA~~l~~~G~~V~~~~r~ 36 (308)
T PRK14619 4 PKTIAILGAGAWGS-----TLAGLASANGHRVRVWSRR 36 (308)
T ss_pred CCEEEEECccHHHH-----HHHHHHHHCCCEEEEEeCC
Confidence 47999997777665 7899999999999998763
No 341
>PF06032 DUF917: Protein of unknown function (DUF917); InterPro: IPR010318 This family consists of hypothetical bacterial and archaeal proteins of unknown function.; PDB: 2O3I_B.
Probab=43.44 E-value=35 Score=32.54 Aligned_cols=106 Identities=13% Similarity=0.029 Sum_probs=50.8
Q ss_pred EcCCCccChHHHHHHHHHHHhCCCeEEEEeCCCCCCCCCCCCCceEEeCCCCCCCCccccccHHHHHHHHHHhchhHHHH
Q 046167 14 VPSPHQGHINPMLQLGTILHSKGFSITVVHTQFNSPNPSNHPEFEFQSIPDGLMDVNISARNLVDSILLLNENCREPFRN 93 (424)
Q Consensus 14 ~~~~~~GH~~p~~~la~~L~~~Gh~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (424)
+..++.|..+-...+++...++|+.|.++..+ .... ..+ +..+. .-..+....+.+- .......
T Consensus 16 LG~GGGG~p~~~~~~~~~~l~~~~~v~lv~~d-el~d----d~~-v~~v~--------~~GsP~v~~E~lp--~g~e~~~ 79 (353)
T PF06032_consen 16 LGSGGGGDPYIGRLMAEQALREGGPVRLVDPD-ELPD----DDL-VVPVG--------MMGSPTVSVEKLP--SGDEALR 79 (353)
T ss_dssp TTTT-SS-HHHHHHHHTT-SBTTS-EEEE-GG-G--S----SE--EEEEE--------EEE-HHHTT-SS---HHHHHHH
T ss_pred EEEcCCccHHHHHHHHHHHHhCCCCeEEEEHh-HcCC----CCc-EeEEE--------EeCCChHHhccCC--CchHHHH
Confidence 45678899888889999999999999999874 1111 111 11100 0001111111110 0112222
Q ss_pred HHHHHHhhcCCCCCceEEEecCcc----chHHHHHHHhCCceEEEecc
Q 046167 94 WLVQMIKEQQPGDEIVCIIYDEVM----YFAEASASQLNVQSIILRTS 137 (424)
Q Consensus 94 ~~~~~~~~~~~~~~pDlvi~d~~~----~~~~~~A~~lgiP~v~~~~~ 137 (424)
.++.+.+..+. ++|.|++-... ..+..+|.++|+|+|--...
T Consensus 80 a~~~le~~~g~--~~~av~~~EiGG~N~~~pl~~Aa~~GlPvvDaD~m 125 (353)
T PF06032_consen 80 AVEALEKYLGR--KIDAVIPIEIGGSNGLNPLLAAAQLGLPVVDADGM 125 (353)
T ss_dssp HHHHHHHHTT----EEEEE-SSSSCCHHHHHHHHHHHHT-EEESB-SS
T ss_pred HHHHHHHhhCC--CccEEeehhcCccchhHHHHHHHHhCCCEEcCCcc
Confidence 34444444444 89999985432 56667888999999865443
No 342
>PRK10964 ADP-heptose:LPS heptosyl transferase I; Provisional
Probab=43.38 E-value=79 Score=29.55 Aligned_cols=38 Identities=8% Similarity=-0.003 Sum_probs=28.8
Q ss_pred HHHHHHHHHhhcCCCCCceEEEecCccchHHHHHHHhCCceEEEecc
Q 046167 91 FRNWLVQMIKEQQPGDEIVCIIYDEVMYFAEASASQLNVQSIILRTS 137 (424)
Q Consensus 91 ~~~~~~~~~~~~~~~~~pDlvi~d~~~~~~~~~A~~lgiP~v~~~~~ 137 (424)
+.++..-+. +.|++|+.- .+..++|..+|+|++.+...
T Consensus 244 L~elaali~-------~a~l~I~nD--SGp~HlA~A~g~p~valfGp 281 (322)
T PRK10964 244 LEQVARVLA-------GAKAVVSVD--TGLSHLTAALDRPNITLYGP 281 (322)
T ss_pred HHHHHHHHH-------hCCEEEecC--CcHHHHHHHhCCCEEEEECC
Confidence 445555554 789999874 57778999999999998663
No 343
>PLN03050 pyridoxine (pyridoxamine) 5'-phosphate oxidase; Provisional
Probab=43.32 E-value=43 Score=30.11 Aligned_cols=32 Identities=34% Similarity=0.437 Sum_probs=26.1
Q ss_pred ceEEEEcCCCc--cChHHHHHHHHHHHhCCCeEEEEe
Q 046167 9 RRVVLVPSPHQ--GHINPMLQLGTILHSKGFSITVVH 43 (424)
Q Consensus 9 ~ril~~~~~~~--GH~~p~~~la~~L~~~Gh~V~~~~ 43 (424)
.+|++++.+|- |+ -+.+|+.|.++|++|+++.
T Consensus 61 ~~V~VlcG~GNNGGD---Glv~AR~L~~~G~~V~v~~ 94 (246)
T PLN03050 61 PRVLLVCGPGNNGGD---GLVAARHLAHFGYEVTVCY 94 (246)
T ss_pred CeEEEEECCCCCchh---HHHHHHHHHHCCCeEEEEE
Confidence 57888887643 55 5788999999999999997
No 344
>PLN02929 NADH kinase
Probab=43.07 E-value=66 Score=29.90 Aligned_cols=64 Identities=9% Similarity=0.064 Sum_probs=40.5
Q ss_pred ccccccccchhhHHHhhh---cCCceeecCccc------chhhHHHHHHhhhhcceecCcccchHHHHHHHHHHhcc
Q 046167 316 VGGFWSHCGWNSTLESIC---EGVPMICMPFFE------DQKVNARYLSHVWGVGLELEHELERGAVEKAVRKLTVD 383 (424)
Q Consensus 316 ~~~~i~hgG~~t~~eal~---~GvP~v~~P~~~------DQ~~na~~~~~~~G~g~~~~~~~~~~~L~~ai~~ll~~ 383 (424)
++++|+-||-||++.|.. .++|++.+=... ++..|... +. .-+|-.. ..+++++.+++++++++
T Consensus 65 ~Dlvi~lGGDGT~L~aa~~~~~~iPvlGIN~Gp~~~~~~~~~~~~~~-~~-r~lGfL~--~~~~~~~~~~L~~il~g 137 (301)
T PLN02929 65 VDLVVAVGGDGTLLQASHFLDDSIPVLGVNSDPTQKDEVEEYSDEFD-AR-RSTGHLC--AATAEDFEQVLDDVLFG 137 (301)
T ss_pred CCEEEEECCcHHHHHHHHHcCCCCcEEEEECCCcccccccccccccc-cc-cCccccc--cCCHHHHHHHHHHHHcC
Confidence 344999999999998854 468888775432 12222211 11 0233222 25788999999999976
No 345
>PRK13185 chlL protochlorophyllide reductase iron-sulfur ATP-binding protein; Provisional
Probab=42.67 E-value=45 Score=30.29 Aligned_cols=36 Identities=8% Similarity=0.063 Sum_probs=31.0
Q ss_pred eEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCC
Q 046167 10 RVVLVPSPHQGHINPMLQLGTILHSKGFSITVVHTQ 45 (424)
Q Consensus 10 ril~~~~~~~GH~~p~~~la~~L~~~Gh~V~~~~~~ 45 (424)
.|.+.--||-|-..-...||..|+++|++|.++=.+
T Consensus 4 iIav~~KGGVGKTT~~~nLA~~la~~G~kVLliD~D 39 (270)
T PRK13185 4 VLAVYGKGGIGKSTTSSNLSAAFAKLGKKVLQIGCD 39 (270)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecc
Confidence 666666778899999999999999999999999554
No 346
>PF10820 DUF2543: Protein of unknown function (DUF2543); InterPro: IPR020251 This entry contains proteins with no known function.
Probab=42.55 E-value=79 Score=21.89 Aligned_cols=39 Identities=18% Similarity=0.384 Sum_probs=26.1
Q ss_pred HHHHHhcccchHHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHhc
Q 046167 376 AVRKLTVDKEGEFLRQRAAQLKEEVELSTRKGGFSYNSLNELLDLINK 423 (424)
Q Consensus 376 ai~~ll~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~a~~~~~~~~~~ 423 (424)
.|.++++| +.+.+.|++ +-.+.+ |--...+|++.++++.
T Consensus 39 LitRLmnn---eeIsEeaQ~--EMA~eA----gi~~~rID~IA~fLNq 77 (81)
T PF10820_consen 39 LITRLMNN---EEISEEAQQ--EMASEA----GIDEQRIDDIANFLNQ 77 (81)
T ss_pred HHHHHhcc---HhhhHHHHH--HHHHHc----CCcHHHHHHHHHHHHH
Confidence 45667788 666666654 223333 6667889999998864
No 347
>cd03789 GT1_LPS_heptosyltransferase Lipopolysaccharide heptosyltransferase is involved in the biosynthesis of lipooligosaccharide (LOS). Lipopolysaccharide (LPS) is a major component of the outer membrane of gram-negative bacteria. LPS heptosyltransferase transfers heptose molecules from ADP-heptose to 3-deoxy-D-manno-octulosonic acid (KDO), a part of the inner core component of LPS. This family belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=42.34 E-value=74 Score=28.98 Aligned_cols=86 Identities=9% Similarity=0.103 Sum_probs=48.6
Q ss_pred HHHHHHHHHHhCCCeEEEEeCCCCCCCCCCCCCceEEeCCCCCCCCccccccHHHHHHHHHHhchhHHHHHHHHHHhhcC
Q 046167 24 PMLQLGTILHSKGFSITVVHTQFNSPNPSNHPEFEFQSIPDGLMDVNISARNLVDSILLLNENCREPFRNWLVQMIKEQQ 103 (424)
Q Consensus 24 p~~~la~~L~~~Gh~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (424)
-+..|++.|.++|++|.+++++...+.... +.- .++. ... ..+ .-...+.+++.-+.
T Consensus 141 ~~~~l~~~l~~~~~~ivl~g~~~e~~~~~~---i~~-~~~~---------~~~----~~~--~~~~~l~e~~~li~---- 197 (279)
T cd03789 141 RFAALADRLLARGARVVLTGGPAERELAEE---IAA-ALGG---------PRV----VNL--AGKTSLRELAALLA---- 197 (279)
T ss_pred HHHHHHHHHHHCCCEEEEEechhhHHHHHH---HHH-hcCC---------Ccc----ccC--cCCCCHHHHHHHHH----
Confidence 477899999999999998876421111000 000 0000 000 000 01112344444453
Q ss_pred CCCCceEEEecCccchHHHHHHHhCCceEEEecc
Q 046167 104 PGDEIVCIIYDEVMYFAEASASQLNVQSIILRTS 137 (424)
Q Consensus 104 ~~~~pDlvi~d~~~~~~~~~A~~lgiP~v~~~~~ 137 (424)
+.|++|+.- .+..++|..+|+|++.+...
T Consensus 198 ---~~~l~I~~D--sg~~HlA~a~~~p~i~l~g~ 226 (279)
T cd03789 198 ---RADLVVTND--SGPMHLAAALGTPTVALFGP 226 (279)
T ss_pred ---hCCEEEeeC--CHHHHHHHHcCCCEEEEECC
Confidence 689999864 46778888999999998654
No 348
>PRK05595 replicative DNA helicase; Provisional
Probab=41.95 E-value=1e+02 Score=30.53 Aligned_cols=35 Identities=14% Similarity=0.341 Sum_probs=28.6
Q ss_pred EEEEcCCCccChHHHHHHHHHHH-hCCCeEEEEeCC
Q 046167 11 VVLVPSPHQGHINPMLQLGTILH-SKGFSITVVHTQ 45 (424)
Q Consensus 11 il~~~~~~~GH~~p~~~la~~L~-~~Gh~V~~~~~~ 45 (424)
+++...|+.|-..=.+.+|..++ +.|+.|.|++-+
T Consensus 204 iviaarpg~GKT~~al~ia~~~a~~~g~~vl~fSlE 239 (444)
T PRK05595 204 ILIAARPSMGKTTFALNIAEYAALREGKSVAIFSLE 239 (444)
T ss_pred EEEEecCCCChHHHHHHHHHHHHHHcCCcEEEEecC
Confidence 45566778899999999998765 579999999875
No 349
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=41.86 E-value=2.2e+02 Score=25.84 Aligned_cols=42 Identities=19% Similarity=0.243 Sum_probs=32.0
Q ss_pred CceEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCCCCCC
Q 046167 8 RRRVVLVPSPHQGHINPMLQLGTILHSKGFSITVVHTQFNSP 49 (424)
Q Consensus 8 ~~ril~~~~~~~GH~~p~~~la~~L~~~Gh~V~~~~~~~~~~ 49 (424)
..+|-+.-.||-|--.=.-+|++.|.++|++|-+++-++..+
T Consensus 29 a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp 70 (266)
T PF03308_consen 29 AHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSP 70 (266)
T ss_dssp SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGG
T ss_pred ceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCC
Confidence 357888888999998888899999999999999999865443
No 350
>PRK04885 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=41.84 E-value=39 Score=30.79 Aligned_cols=51 Identities=20% Similarity=0.131 Sum_probs=35.2
Q ss_pred cccccccchhhHHHhhh------cCCceeecCcccchhhHHHHHHhhhhcceecCcccchHHHHHHHHHHhcc
Q 046167 317 GGFWSHCGWNSTLESIC------EGVPMICMPFFEDQKVNARYLSHVWGVGLELEHELERGAVEKAVRKLTVD 383 (424)
Q Consensus 317 ~~~i~hgG~~t~~eal~------~GvP~v~~P~~~DQ~~na~~~~~~~G~g~~~~~~~~~~~L~~ai~~ll~~ 383 (424)
+++|+-||-||++.++. .++|++.+-. + .+|-. . +.+++++.+++++++++
T Consensus 37 Dlvi~iGGDGT~L~a~~~~~~~~~~iPilGIN~-------------G-~lGFL-~-~~~~~~~~~~l~~i~~g 93 (265)
T PRK04885 37 DIVISVGGDGTLLSAFHRYENQLDKVRFVGVHT-------------G-HLGFY-T-DWRPFEVDKLVIALAKD 93 (265)
T ss_pred CEEEEECCcHHHHHHHHHhcccCCCCeEEEEeC-------------C-Cceec-c-cCCHHHHHHHHHHHHcC
Confidence 44999999999999976 4788877632 1 22211 1 25677778888888765
No 351
>PF01470 Peptidase_C15: Pyroglutamyl peptidase This is family C15 in the peptidase classification. ; InterPro: IPR000816 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to MEROPS peptidase family C15 (pyroglutamyl peptidase I, clan CF). The type example being pyroglutamyl peptidase I of Bacillus amyloliquefaciens. Pyroglutamyl/pyrrolidone carboxyl peptidase (Pcp or PYRase) is an exopeptidase that hydrolytically removes the pGlu from pGlu-peptides or pGlu-proteins [, ]. PYRase has been found in prokaryotes and eukaryotes where at least two different classes have been characterised: the first containing bacterial and animal type I PYRases, and the second containing animal type II and serum PYRases. Type I and bacterial PYRases are soluble enzymes, while type II PYRases are membrane-bound. The primary application of PYRase has been its utilisation for protein or peptide sequencing, and bacterial diagnosis []. The conserved residues Cys-144 and His-168 have been identified by inhibition and mutagenesis studies [, ].; GO: 0006508 proteolysis; PDB: 1A2Z_A 1IU8_A 3RNZ_A 3RO0_D 1AUG_D 2EBJ_A 3LAC_A 1X12_B 1Z8X_B 1X10_C ....
Probab=41.59 E-value=55 Score=28.40 Aligned_cols=26 Identities=23% Similarity=0.275 Sum_probs=18.5
Q ss_pred ceEEEEcCCCcc--ChHHHHHHHHHHHh
Q 046167 9 RRVVLVPSPHQG--HINPMLQLGTILHS 34 (424)
Q Consensus 9 ~ril~~~~~~~G--H~~p~~~la~~L~~ 34 (424)
||||+..|+-+| -.||...++++|.+
T Consensus 1 m~ILvTGFgpF~~~~~NpS~~~v~~L~~ 28 (202)
T PF01470_consen 1 MRILVTGFGPFGGVPVNPSWELVKRLPG 28 (202)
T ss_dssp EEEEEEEE-S-TT-SS-HHHHHHHHHTT
T ss_pred CEEEEecccCCCCCCCChHHHHHHHcCC
Confidence 588888876444 36899999999976
No 352
>PRK10353 3-methyl-adenine DNA glycosylase I; Provisional
Probab=41.44 E-value=91 Score=26.70 Aligned_cols=59 Identities=14% Similarity=0.139 Sum_probs=36.8
Q ss_pred ecCcccchhhHHHHHHhhhhcceecCc-------------ccchHHHH----HHHHHHhcccchHHHHHHHHHHHHHHH
Q 046167 340 CMPFFEDQKVNARYLSHVWGVGLELEH-------------ELERGAVE----KAVRKLTVDKEGEFLRQRAAQLKEEVE 401 (424)
Q Consensus 340 ~~P~~~DQ~~na~~~~~~~G~g~~~~~-------------~~~~~~L~----~ai~~ll~~~~~~~~~~~a~~l~~~~~ 401 (424)
.+|.+.||..--..+-+...+|+.-.. .++++.++ +.|++++.|+ .+-.+-.++.+.+.
T Consensus 22 G~P~~dd~~LFE~L~Le~~QAGLSW~tIL~Kre~fr~aF~~Fd~~~VA~~~e~die~Ll~d~---~IIRnr~KI~Avi~ 97 (187)
T PRK10353 22 GVPETDSKKLFEMICLEGQQAGLSWITVLKKRENYRACFHQFDPVKVAAMQEEDVERLVQDA---GIIRHRGKIQAIIG 97 (187)
T ss_pred CCcCCCcHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHcCCCHHHHhCCCHHHHHHHhcCc---hhHHhHHHHHHHHH
Confidence 456677887776555444677765421 37777776 7899999994 44444444444443
No 353
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=41.41 E-value=62 Score=23.24 Aligned_cols=33 Identities=15% Similarity=0.268 Sum_probs=28.1
Q ss_pred EEEEcCCCccChHHHHHHHHHHHhCCCeEEEEe
Q 046167 11 VVLVPSPHQGHINPMLQLGTILHSKGFSITVVH 43 (424)
Q Consensus 11 il~~~~~~~GH~~p~~~la~~L~~~Gh~V~~~~ 43 (424)
+++...+|.|-..-...+|..|++.|++|.++-
T Consensus 2 ~~~~g~~G~Gktt~~~~l~~~l~~~g~~v~~~~ 34 (99)
T cd01983 2 IVVTGKGGVGKTTLAANLAAALAKRGKRVLLID 34 (99)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEC
Confidence 456666788888889999999999999998886
No 354
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=41.28 E-value=31 Score=32.48 Aligned_cols=32 Identities=22% Similarity=0.324 Sum_probs=27.1
Q ss_pred ceEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCC
Q 046167 9 RRVVLVPSPHQGHINPMLQLGTILHSKGFSITVVHTQ 45 (424)
Q Consensus 9 ~ril~~~~~~~GH~~p~~~la~~L~~~Gh~V~~~~~~ 45 (424)
|||.|+-.|..|. .+|..|.++||+|+++...
T Consensus 5 m~I~iIG~G~mG~-----~ia~~L~~~G~~V~~~~r~ 36 (328)
T PRK14618 5 MRVAVLGAGAWGT-----ALAVLAASKGVPVRLWARR 36 (328)
T ss_pred CeEEEECcCHHHH-----HHHHHHHHCCCeEEEEeCC
Confidence 6899997777775 6889999999999999874
No 355
>PRK07984 enoyl-(acyl carrier protein) reductase; Provisional
Probab=41.10 E-value=54 Score=29.65 Aligned_cols=40 Identities=13% Similarity=0.155 Sum_probs=26.5
Q ss_pred CcccCCCCceEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeC
Q 046167 1 MEEQGQRRRRVVLVPSPHQGHINPMLQLGTILHSKGFSITVVHT 44 (424)
Q Consensus 1 ~~~m~~~~~ril~~~~~~~GH~~p~~~la~~L~~~Gh~V~~~~~ 44 (424)
|+.|.. |+++++.++.|+ -=-.++|++|.++|++|.+...
T Consensus 1 ~~~l~~---k~~lITGas~~~-GIG~aia~~la~~G~~vil~~r 40 (262)
T PRK07984 1 MGFLSG---KRILVTGVASKL-SIAYGIAQAMHREGAELAFTYQ 40 (262)
T ss_pred CcccCC---CEEEEeCCCCCc-cHHHHHHHHHHHCCCEEEEEec
Confidence 556543 567777665432 1124789999999999987644
No 356
>COG4635 HemG Flavodoxin [Energy production and conversion / Coenzyme metabolism]
Probab=40.98 E-value=49 Score=27.40 Aligned_cols=54 Identities=9% Similarity=0.266 Sum_probs=35.5
Q ss_pred ceEEEEcCCCccChHHHHH-HHHHHHhCCCeEEEEeCCCCCCCCCCCCCceEEeCCC
Q 046167 9 RRVVLVPSPHQGHINPMLQ-LGTILHSKGFSITVVHTQFNSPNPSNHPEFEFQSIPD 64 (424)
Q Consensus 9 ~ril~~~~~~~GH~~p~~~-la~~L~~~Gh~V~~~~~~~~~~~~~~~~g~~~~~~~~ 64 (424)
||+|++=..-.|...-..+ ||..|.++||+|.+.=.. .... ....++.-+.+..
T Consensus 1 Mk~LIlYstr~GqT~kIA~~iA~~L~e~g~qvdi~dl~-~~~~-~~l~~ydavVIgA 55 (175)
T COG4635 1 MKTLILYSTRDGQTRKIAEYIASHLRESGIQVDIQDLH-AVEE-PALEDYDAVVIGA 55 (175)
T ss_pred CceEEEEecCCCcHHHHHHHHHHHhhhcCCeeeeeehh-hhhc-cChhhCceEEEec
Confidence 4677776777788776554 899999999999998442 1111 1224566666653
No 357
>PLN02695 GDP-D-mannose-3',5'-epimerase
Probab=40.90 E-value=38 Score=32.52 Aligned_cols=34 Identities=18% Similarity=0.282 Sum_probs=25.3
Q ss_pred CCceEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeC
Q 046167 7 RRRRVVLVPSPHQGHINPMLQLGTILHSKGFSITVVHT 44 (424)
Q Consensus 7 ~~~ril~~~~~~~GH~~p~~~la~~L~~~Gh~V~~~~~ 44 (424)
.+|||+++ |+.|.+ -.+|++.|.++||+|+.+..
T Consensus 20 ~~~~IlVt--GgtGfI--G~~l~~~L~~~G~~V~~v~r 53 (370)
T PLN02695 20 EKLRICIT--GAGGFI--ASHIARRLKAEGHYIIASDW 53 (370)
T ss_pred CCCEEEEE--CCccHH--HHHHHHHHHhCCCEEEEEEe
Confidence 35888877 344443 34689999999999999875
No 358
>COG0503 Apt Adenine/guanine phosphoribosyltransferases and related PRPP-binding proteins [Nucleotide transport and metabolism]
Probab=40.87 E-value=56 Score=27.78 Aligned_cols=28 Identities=29% Similarity=0.163 Sum_probs=23.0
Q ss_pred CceEEEecC--ccchHHHHHHHhCCceEEE
Q 046167 107 EIVCIIYDE--VMYFAEASASQLNVQSIIL 134 (424)
Q Consensus 107 ~pDlvi~d~--~~~~~~~~A~~lgiP~v~~ 134 (424)
++|.|++=. ....+..+|.++|+|++.+
T Consensus 53 ~id~Iv~iea~Gi~~a~~vA~~Lgvp~v~v 82 (179)
T COG0503 53 GIDKIVTIEARGIPLAAAVALELGVPFVPV 82 (179)
T ss_pred CCCEEEEEccccchhHHHHHHHhCCCEEEE
Confidence 699998843 3477889999999999976
No 359
>PRK05579 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated
Probab=40.66 E-value=44 Score=32.53 Aligned_cols=38 Identities=29% Similarity=0.253 Sum_probs=30.1
Q ss_pred ceEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCCCC
Q 046167 9 RRVVLVPSPHQGHINPMLQLGTILHSKGFSITVVHTQFN 47 (424)
Q Consensus 9 ~ril~~~~~~~GH~~p~~~la~~L~~~Gh~V~~~~~~~~ 47 (424)
+||++.-.|+. ..+-...+.+.|++.|++|.++.++..
T Consensus 7 k~IllgvTGsi-aa~k~~~lv~~L~~~g~~V~vv~T~~A 44 (399)
T PRK05579 7 KRIVLGVSGGI-AAYKALELVRRLRKAGADVRVVMTEAA 44 (399)
T ss_pred CeEEEEEeCHH-HHHHHHHHHHHHHhCCCEEEEEECHhH
Confidence 47777666554 556788999999999999999998643
No 360
>PRK11914 diacylglycerol kinase; Reviewed
Probab=40.62 E-value=1.4e+02 Score=27.60 Aligned_cols=81 Identities=9% Similarity=0.003 Sum_probs=46.0
Q ss_pred EEEEEeCCcccCCHHHHHHHHHHHHhCCCCeEEEEcCCCCCCCcccccCchhHHHHhcCCCceeeecchhhhhccccccc
Q 046167 239 VIYVSLGSVASMDKKELEEMAWGLVNSKQPFLWVIRPRTNNAPEGIELLPKVLAEDVQENGYIVKWAPQKEVLSHVAVGG 318 (424)
Q Consensus 239 ~I~vs~Gs~~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~nv~v~~~ip~~~ll~~~~~~~ 318 (424)
.++++.-|......+.+..+.+.+++.+..+.+..... +....+.. ..... ...+.
T Consensus 12 ~iI~NP~sG~g~~~~~~~~~~~~l~~~g~~~~~~~t~~-----------~~~~~~~a-----------~~~~~--~~~d~ 67 (306)
T PRK11914 12 TVLTNPLSGHGAAPHAAERAIARLHHRGVDVVEIVGTD-----------AHDARHLV-----------AAALA--KGTDA 67 (306)
T ss_pred EEEECCCCCCCcHHHHHHHHHHHHHHcCCeEEEEEeCC-----------HHHHHHHH-----------HHHHh--cCCCE
Confidence 44455444332245667778888888777765443211 11111000 00111 22344
Q ss_pred cccccchhhHHHhh----hcCCceeecCc
Q 046167 319 FWSHCGWNSTLESI----CEGVPMICMPF 343 (424)
Q Consensus 319 ~i~hgG~~t~~eal----~~GvP~v~~P~ 343 (424)
+|.-||=||+.|++ ..++|+-++|.
T Consensus 68 vvv~GGDGTi~evv~~l~~~~~~lgiiP~ 96 (306)
T PRK11914 68 LVVVGGDGVISNALQVLAGTDIPLGIIPA 96 (306)
T ss_pred EEEECCchHHHHHhHHhccCCCcEEEEeC
Confidence 99999999998886 44789999996
No 361
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=40.48 E-value=28 Score=32.26 Aligned_cols=31 Identities=23% Similarity=0.307 Sum_probs=25.4
Q ss_pred ceEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeC
Q 046167 9 RRVVLVPSPHQGHINPMLQLGTILHSKGFSITVVHT 44 (424)
Q Consensus 9 ~ril~~~~~~~GH~~p~~~la~~L~~~Gh~V~~~~~ 44 (424)
|||+++..|..|- .+|..|.+.||+|++++.
T Consensus 1 mkI~IiG~G~iG~-----~~a~~L~~~g~~V~~~~r 31 (305)
T PRK12921 1 MRIAVVGAGAVGG-----TFGGRLLEAGRDVTFLVR 31 (305)
T ss_pred CeEEEECCCHHHH-----HHHHHHHHCCCceEEEec
Confidence 5788887776664 678889999999999987
No 362
>PRK07806 short chain dehydrogenase; Provisional
Probab=40.47 E-value=55 Score=28.97 Aligned_cols=38 Identities=16% Similarity=0.156 Sum_probs=23.9
Q ss_pred CcccCCCCceEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeC
Q 046167 1 MEEQGQRRRRVVLVPSPHQGHINPMLQLGTILHSKGFSITVVHT 44 (424)
Q Consensus 1 ~~~m~~~~~ril~~~~~~~GH~~p~~~la~~L~~~Gh~V~~~~~ 44 (424)
|..|..+ +++++. . .|-+ -.++++.|.++||+|+.+..
T Consensus 1 ~~~~~~k--~vlItG-a-sggi--G~~l~~~l~~~G~~V~~~~r 38 (248)
T PRK07806 1 MGDLPGK--TALVTG-S-SRGI--GADTAKILAGAGAHVVVNYR 38 (248)
T ss_pred CCCCCCc--EEEEEC-C-CCcH--HHHHHHHHHHCCCEEEEEeC
Confidence 5555542 555543 2 2222 25678999999999988765
No 363
>PF00982 Glyco_transf_20: Glycosyltransferase family 20; InterPro: IPR001830 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 20 GT20 from CAZY comprises enzymes with only one known activity; alpha, alpha-trehalose-phosphate synthase [UDP-forming] (2.4.1.15 from EC). Synthesis of trehalose in the yeast Saccharomyces cerevisiae is catalysed by the trehalose-6-phosphate (Tre6P) synthase/phosphatase complex, which is composed of at least three different subunits encoded by the genes TPS1, TPS2, and TSL1. Tps1 and Tps2 carry the catalytic activities of trehalose synthesis, namely Tre6P synthase (Tps1) and Tre6P phosphatase (Tps2), while TsI1 has regulatory functions. There is some evidence that TsI1 and Tps3 may share a common function with respect to regulation and/or structural stabilisation of the Tre6P synthase/phosphatase complex in exponentially growing, heat-shocked cells []. OtsA (trehalose-6-phosphate synthase) from Escherichia coli has homology to the full-length TPS1, the N-terminal part of TPS2 and an internal region of TPS3 (TSL1) of yeast [].; GO: 0003824 catalytic activity, 0005992 trehalose biosynthetic process; PDB: 1UQU_A 2WTX_A 1UQT_B 1GZ5_B.
Probab=40.12 E-value=95 Score=31.04 Aligned_cols=105 Identities=15% Similarity=0.071 Sum_probs=58.4
Q ss_pred eecchhh---hhcccccccccc--ccchhhH-HHhhhcCCc---eeecCcccchhhHHHHHHhhhh-cceecCcccchHH
Q 046167 303 KWAPQKE---VLSHVAVGGFWS--HCGWNST-LESICEGVP---MICMPFFEDQKVNARYLSHVWG-VGLELEHELERGA 372 (424)
Q Consensus 303 ~~ip~~~---ll~~~~~~~~i~--hgG~~t~-~eal~~GvP---~v~~P~~~DQ~~na~~~~~~~G-~g~~~~~~~~~~~ 372 (424)
.-+|+.. +++.+++ ++|| ..|+|.+ .|.+++..+ ++++ -..|...+. |+ .++.+.+ .+.++
T Consensus 359 ~~~~~~~~~aly~~aDv-~lvTslrDGmNLva~Eyva~q~~~~GvLiL------SefaGaa~~-L~~~al~VNP-~d~~~ 429 (474)
T PF00982_consen 359 RSLSFEELLALYRAADV-ALVTSLRDGMNLVAKEYVACQDDNPGVLIL------SEFAGAAEQ-LSEAALLVNP-WDIEE 429 (474)
T ss_dssp S---HHHHHHHHHH-SE-EEE--SSBS--HHHHHHHHHS-TS--EEEE------ETTBGGGGT--TTS-EEE-T-T-HHH
T ss_pred cCCCHHHHHHHHHhhhh-EEecchhhccCCcceEEEEEecCCCCceEe------eccCCHHHH-cCCccEEECC-CChHH
Confidence 4455554 7777887 2333 4788866 788888766 3333 122222334 66 4578888 89999
Q ss_pred HHHHHHHHhcccchHHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHh
Q 046167 373 VEKAVRKLTVDKEGEFLRQRAAQLKEEVELSTRKGGFSYNSLNELLDLIN 422 (424)
Q Consensus 373 L~~ai~~ll~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~a~~~~~~~~~ 422 (424)
++++|.+.|+=+. +.-+++.+++.+.+.+ .++..=++.+++.|+
T Consensus 430 ~A~ai~~AL~M~~-~Er~~r~~~~~~~v~~-----~~~~~W~~~~l~~L~ 473 (474)
T PF00982_consen 430 VADAIHEALTMPP-EERKERHARLREYVRE-----HDVQWWAESFLRDLK 473 (474)
T ss_dssp HHHHHHHHHT--H-HHHHHHHHHHHHHHHH-----T-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCH-HHHHHHHHHHHHHhHh-----CCHHHHHHHHHHHhh
Confidence 9999999997532 3456666666666665 466666777777665
No 364
>cd02040 NifH NifH gene encodes component II (iron protein) of nitrogenase. Nitrogenase is responsible for the biological nitrogen fixation, i.e. reduction of molecular nitrogen to ammonia. NifH consists of two oxygen-sensitive metallosulfur proteins: the mollybdenum-iron (alternatively, vanadium-iron or iron-iron) protein (commonly referred to as component 1), and the iron protein (commonly referred to as component 2). The iron protein is a homodimer, with an Fe4S4 cluster bound between the subunits and two ATP-binding domains. It supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component 1 for the reduction of molecular nitrogen to ammonia.
Probab=39.90 E-value=50 Score=29.88 Aligned_cols=37 Identities=14% Similarity=0.167 Sum_probs=32.1
Q ss_pred eEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCCC
Q 046167 10 RVVLVPSPHQGHINPMLQLGTILHSKGFSITVVHTQF 46 (424)
Q Consensus 10 ril~~~~~~~GH~~p~~~la~~L~~~Gh~V~~~~~~~ 46 (424)
+|.|+.-||-|-..-...||..|+++|++|.++=.++
T Consensus 3 ~iav~~KGGvGKTT~~~nLA~~La~~G~kVlliD~Dp 39 (270)
T cd02040 3 QIAIYGKGGIGKSTTTQNLSAALAEMGKKVMIVGCDP 39 (270)
T ss_pred EEEEEeCCcCCHHHHHHHHHHHHHhCCCeEEEEEcCC
Confidence 5777777788999999999999999999999996653
No 365
>TIGR01369 CPSaseII_lrg carbamoyl-phosphate synthase, large subunit. In several thermophilic species (Methanobacterium thermoautotrophicum, Methanococcus jannaschii, Aquifex aeolicus), the large subunit appears split, at different points, into two separate genes.
Probab=39.89 E-value=2.5e+02 Score=31.36 Aligned_cols=39 Identities=15% Similarity=0.256 Sum_probs=30.5
Q ss_pred CceEEEEcCCC--ccC----hHHHHHHHHHHHhCCCeEEEEeCCC
Q 046167 8 RRRVVLVPSPH--QGH----INPMLQLGTILHSKGFSITVVHTQF 46 (424)
Q Consensus 8 ~~ril~~~~~~--~GH----~~p~~~la~~L~~~Gh~V~~~~~~~ 46 (424)
-.|||++..+. .|+ =+.-..++++|++.||+|.++.+..
T Consensus 6 ~~kvlviG~g~~~igq~~e~d~sg~q~~kalke~G~~vi~v~~np 50 (1050)
T TIGR01369 6 IKKILVIGSGPIVIGQAAEFDYSGSQACKALKEEGYRVILVNSNP 50 (1050)
T ss_pred CcEEEEECCCcchhcchhcccchHHHHHHHHHHcCCEEEEEecch
Confidence 36888888764 353 3567789999999999999998753
No 366
>PRK13896 cobyrinic acid a,c-diamide synthase; Provisional
Probab=39.89 E-value=2.2e+02 Score=28.08 Aligned_cols=36 Identities=17% Similarity=0.193 Sum_probs=27.9
Q ss_pred eEEEEcCC-CccChHHHHHHHHHHHhCCCeEEEEeCC
Q 046167 10 RVVLVPSP-HQGHINPMLQLGTILHSKGFSITVVHTQ 45 (424)
Q Consensus 10 ril~~~~~-~~GH~~p~~~la~~L~~~Gh~V~~~~~~ 45 (424)
+|++.... +.|-..-.+.|++.|+++|.+|..+-+.
T Consensus 3 ~~~i~~~~s~~GKT~vt~gl~~~l~~~g~~v~~~K~G 39 (433)
T PRK13896 3 GFVLGGTSSGVGKTVATLATIRALEDAGYAVQPAKAG 39 (433)
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHHHHCCCeeEEEeeC
Confidence 45555544 5588889999999999999999776553
No 367
>PF05693 Glycogen_syn: Glycogen synthase; InterPro: IPR008631 This family consists of the eukaryotic glycogen synthase proteins GYS1, GYS2 and GYS3. Glycogen synthase (GS) is the enzyme responsible for the synthesis of -1,4-linked glucose chains in glycogen. It is the rate limiting enzyme in the synthesis of the polysaccharide, and its activity is highly regulated through phosphorylation at multiple sites and also by allosteric effectors, mainly glucose 6-phosphate (G6P) [].; GO: 0004373 glycogen (starch) synthase activity, 0005978 glycogen biosynthetic process; PDB: 3NB0_C 3RT1_C 3RSZ_D 3O3C_B 3NAZ_B 3NCH_D.
Probab=39.81 E-value=64 Score=33.00 Aligned_cols=93 Identities=18% Similarity=0.232 Sum_probs=45.9
Q ss_pred cchhhhhccccccccccccc-hh-hHHHhhhcCCceeecCccc-----chhhHHHHHHhhhhcceecCcccch----HHH
Q 046167 305 APQKEVLSHVAVGGFWSHCG-WN-STLESICEGVPMICMPFFE-----DQKVNARYLSHVWGVGLELEHELER----GAV 373 (424)
Q Consensus 305 ip~~~ll~~~~~~~~i~hgG-~~-t~~eal~~GvP~v~~P~~~-----DQ~~na~~~~~~~G~g~~~~~~~~~----~~L 373 (424)
+++.+++..|+++.|-+.=- || |-+||++.|+|.|..=..| .+... .. .. .|+-+.=....+. ++|
T Consensus 461 l~Y~dfv~GcdLgvFPSYYEPWGYTPlE~~a~gVPsITTnLsGFG~~~~~~~~-~~-~~-~GV~VvdR~~~n~~e~v~~l 537 (633)
T PF05693_consen 461 LDYYDFVRGCDLGVFPSYYEPWGYTPLECTAFGVPSITTNLSGFGCWMQEHIE-DP-EE-YGVYVVDRRDKNYDESVNQL 537 (633)
T ss_dssp S-HHHHHHHSSEEEE--SSBSS-HHHHHHHHTT--EEEETTBHHHHHHHTTS--HH-GG-GTEEEE-SSSS-HHHHHHHH
T ss_pred CCHHHHhccCceeeeccccccccCChHHHhhcCCceeeccchhHHHHHHHhhc-cC-cC-CcEEEEeCCCCCHHHHHHHH
Confidence 36677777777755555321 33 7799999999999875422 11111 11 23 3555444433344 445
Q ss_pred HHHHHHHhcccc--hHHHHHHHHHHHHHH
Q 046167 374 EKAVRKLTVDKE--GEFLRQRAAQLKEEV 400 (424)
Q Consensus 374 ~~ai~~ll~~~~--~~~~~~~a~~l~~~~ 400 (424)
.+.+.+...-.+ +...|++++++++.+
T Consensus 538 a~~l~~f~~~~~rqri~~Rn~ae~LS~~~ 566 (633)
T PF05693_consen 538 ADFLYKFCQLSRRQRIIQRNRAERLSDLA 566 (633)
T ss_dssp HHHHHHHHT--HHHHHHHHHHHHHHGGGG
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHhC
Confidence 555544443222 345677777776654
No 368
>PRK08265 short chain dehydrogenase; Provisional
Probab=39.77 E-value=57 Score=29.32 Aligned_cols=39 Identities=15% Similarity=0.141 Sum_probs=26.4
Q ss_pred CcccCCCCceEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCC
Q 046167 1 MEEQGQRRRRVVLVPSPHQGHINPMLQLGTILHSKGFSITVVHTQ 45 (424)
Q Consensus 1 ~~~m~~~~~ril~~~~~~~GH~~p~~~la~~L~~~Gh~V~~~~~~ 45 (424)
|..|+. |.++++.++.| --.++|++|.++|++|++....
T Consensus 1 m~~~~~---k~vlItGas~g---IG~~ia~~l~~~G~~V~~~~r~ 39 (261)
T PRK08265 1 MIGLAG---KVAIVTGGATL---IGAAVARALVAAGARVAIVDID 39 (261)
T ss_pred CCCCCC---CEEEEECCCCh---HHHHHHHHHHHCCCEEEEEeCC
Confidence 545543 45566654432 3467899999999999888653
No 369
>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=39.72 E-value=2.7e+02 Score=24.63 Aligned_cols=109 Identities=12% Similarity=-0.023 Sum_probs=65.5
Q ss_pred HHHHHHhhcCCCCCceEEEecCccchHHHHHHHhCCceEEEecchHHHHHHHHhhhcccccCCCCCChhHHHHHHHhhhc
Q 046167 94 WLVQMIKEQQPGDEIVCIIYDEVMYFAEASASQLNVQSIILRTSGAVTVVARLVLFQLKEEGYNPLKESYVQLINNAYSA 173 (424)
Q Consensus 94 ~~~~~~~~~~~~~~pDlvi~d~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~ 173 (424)
.++...+. +.+.+|+-.+.......|+..|+|++.=..++.--.... .
T Consensus 83 ~a~~a~~a-----GA~FiVsP~~~~~v~~~~~~~~i~~iPG~~TpsEi~~A~---------------------------~ 130 (222)
T PRK07114 83 TAALYIQL-----GANFIVTPLFNPDIAKVCNRRKVPYSPGCGSLSEIGYAE---------------------------E 130 (222)
T ss_pred HHHHHHHc-----CCCEEECCCCCHHHHHHHHHcCCCEeCCCCCHHHHHHHH---------------------------H
Confidence 44555554 899999998888888999999999996433332222211 1
Q ss_pred cCCceEEecChhhhhHHHHHHHHhccC-CCeeeecccccCCCCCCCCCcccccccccccccCCCCeEEEEEeCCccc
Q 046167 174 RTSSAVISNTIYCLEESVLSQLQQYFK-VPNFPIGPLHKFAPSSNGSLLKEDTSCISWLNNQSPKSVIYVSLGSVAS 249 (424)
Q Consensus 174 ~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~~vGp~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~I~vs~Gs~~~ 249 (424)
...+.+-+---..+.+.++..+...+| .++.++|.+.... +.+.+|+.. +.+.|..||...
T Consensus 131 ~Ga~~vKlFPA~~~G~~~ikal~~p~p~i~~~ptGGV~~~~-----------~n~~~yl~a----Ga~avg~Gs~L~ 192 (222)
T PRK07114 131 LGCEIVKLFPGSVYGPGFVKAIKGPMPWTKIMPTGGVEPTE-----------ENLKKWFGA----GVTCVGMGSKLI 192 (222)
T ss_pred CCCCEEEECcccccCHHHHHHHhccCCCCeEEeCCCCCcch-----------hcHHHHHhC----CCEEEEEChhhc
Confidence 122222211111334566666666564 3488888887410 116778873 278888888753
No 370
>PRK13193 pyrrolidone-carboxylate peptidase; Provisional
Probab=39.65 E-value=85 Score=27.43 Aligned_cols=26 Identities=19% Similarity=0.045 Sum_probs=20.4
Q ss_pred ceEEEEcCCCcc--ChHHHHHHHHHHHh
Q 046167 9 RRVVLVPSPHQG--HINPMLQLGTILHS 34 (424)
Q Consensus 9 ~ril~~~~~~~G--H~~p~~~la~~L~~ 34 (424)
|+||+..|+-+| -.||...++++|.+
T Consensus 1 M~vLiTGF~PF~g~~~NPS~~~v~~L~~ 28 (209)
T PRK13193 1 MTVLLFGFEPFLEYKENPSQLIVEALNG 28 (209)
T ss_pred CEEEEEeeCCCCCCCCCcHHHHHHHhhc
Confidence 578888777554 37899999999976
No 371
>cd07025 Peptidase_S66 LD-Carboxypeptidase, a serine protease, includes microcin C7 self immunity protein. LD-carboxypeptidase (Muramoyltetrapeptide carboxypeptidase; EC 3.4.17.13; Merops family S66; initially described as Carboxypeptidase II) family also includes the microcin c7 self-immunity protein (MccF) as well as uncharacterized proteins including hypothetical proteins. LD-carboxypeptidase hydrolyzes the amide bond that links the dibasic amino acids to C-terminal D-amino acids. The physiological substrates of LD-carboxypeptidase are tetrapeptide fragments (such as UDP-MurNAc-tetrapeptides) that are produced when bacterial cell walls are degraded; they contain an L-configured residue (L-lysine or meso-diaminopimelic acid residue) as the penultimate residue and D-alanine as the ultimate residue. A possible role of LD-carboxypeptidase is in peptidoglycan recycling whereby the resulting tripeptide (precursor for murein synthesis) can be reconverted into peptidoglycan by attachment o
Probab=39.65 E-value=53 Score=30.21 Aligned_cols=73 Identities=8% Similarity=0.189 Sum_probs=46.2
Q ss_pred CCHHHHHHHHHHHHhCCCCeEEEEcCCCCCCCcccccCchhHHHHhcCCCceeeecchhhhhccccccccccccchhhHH
Q 046167 250 MDKKELEEMAWGLVNSKQPFLWVIRPRTNNAPEGIELLPKVLAEDVQENGYIVKWAPQKEVLSHVAVGGFWSHCGWNSTL 329 (424)
Q Consensus 250 ~~~~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~nv~v~~~ip~~~ll~~~~~~~~i~hgG~~t~~ 329 (424)
.+.+-.+.+.+++.+...+.||.++++..+- ++.++++...+-++|.+ ||=.+-.++++
T Consensus 46 s~~~Ra~dL~~a~~d~~i~aI~~~rGG~ga~-------------------rlL~~ld~~~~~~~pK~--~iGySDiTaL~ 104 (282)
T cd07025 46 TDEERAADLNAAFADPEIKAIWCARGGYGAN-------------------RLLPYLDYDLIRANPKI--FVGYSDITALH 104 (282)
T ss_pred CHHHHHHHHHHHhhCCCCCEEEEcCCcCCHH-------------------HhhhhCCHHHHhhCCeE--EEEecHHHHHH
Confidence 4567788899999999999999998874221 33444455555455555 66555555555
Q ss_pred Hhhhc--CCceeecCc
Q 046167 330 ESICE--GVPMICMPF 343 (424)
Q Consensus 330 eal~~--GvP~v~~P~ 343 (424)
-+++. |++.+-=|.
T Consensus 105 ~~l~~~~g~~t~hGp~ 120 (282)
T cd07025 105 LALYAKTGLVTFHGPM 120 (282)
T ss_pred HHHHHhcCceEEECcc
Confidence 55543 555544443
No 372
>cd02065 B12-binding_like B12 binding domain (B12-BD). Most of the members bind different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide. This domain is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins. Not all members of this family contain the conserved binding motif.
Probab=39.37 E-value=51 Score=25.58 Aligned_cols=34 Identities=15% Similarity=0.068 Sum_probs=30.0
Q ss_pred EEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeC
Q 046167 11 VVLVPSPHQGHINPMLQLGTILHSKGFSITVVHT 44 (424)
Q Consensus 11 il~~~~~~~GH~~p~~~la~~L~~~Gh~V~~~~~ 44 (424)
++..+.++..|......++..|.++|++|.+...
T Consensus 2 ~l~~~~~~~~h~lg~~~~~~~l~~~G~~v~~l~~ 35 (125)
T cd02065 2 VLGATVGGDVHDIGKNIVAIALRDNGFEVIDLGV 35 (125)
T ss_pred EEEEEcCCchhhHHHHHHHHHHHHCCCEEEEcCC
Confidence 5677778899999999999999999999999854
No 373
>TIGR02700 flavo_MJ0208 archaeoflavoprotein, MJ0208 family. This model describes one of two paralogous families of archaealflavoprotein. The other, described by TIGR02699 and typified by the partially characterized AF1518 of Archaeoglobus fulgidus, is a homodimeric FMN-containing flavoprotein that accepts electrons from ferredoxin and can transfer them to various oxidoreductases. The function of this protein family is unknown.
Probab=39.23 E-value=45 Score=29.73 Aligned_cols=37 Identities=5% Similarity=-0.020 Sum_probs=26.8
Q ss_pred EEEEcCCCccChHHHHHHHHHHHhC--CCeEEEEeCCCC
Q 046167 11 VVLVPSPHQGHINPMLQLGTILHSK--GFSITVVHTQFN 47 (424)
Q Consensus 11 il~~~~~~~GH~~p~~~la~~L~~~--Gh~V~~~~~~~~ 47 (424)
|++.-.|+.+=++-.+.+.+.|+++ ||+|.++.++..
T Consensus 2 i~~~itGs~~~~~~~~~l~~~L~~~~~g~~V~vv~T~~a 40 (234)
T TIGR02700 2 IGWGITGAGHLLVESFQVMKELKREIEELRVSTFVSRAG 40 (234)
T ss_pred eEEEEeCccHhHHHHHHHHHHHHhhcCCCeEEEEEChhH
Confidence 3333333333447899999999999 999999999643
No 374
>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.
Probab=39.21 E-value=3.5e+02 Score=25.75 Aligned_cols=36 Identities=22% Similarity=0.361 Sum_probs=30.5
Q ss_pred EEEEcCCCccChHHHHHHHHHHH-hCCCeEEEEeCCC
Q 046167 11 VVLVPSPHQGHINPMLQLGTILH-SKGFSITVVHTQF 46 (424)
Q Consensus 11 il~~~~~~~GH~~p~~~la~~L~-~~Gh~V~~~~~~~ 46 (424)
++|+..+|.|-..=.-.|++.|. ++|+.|.++..+.
T Consensus 2 ~~l~Gl~GaGKST~~~~l~~~l~~~~g~~v~~~~~Dd 38 (340)
T TIGR03575 2 CVLCGLPAAGKSTLARSLSATLRRERGWAVAVITYDD 38 (340)
T ss_pred eEEECCCCCCHHHHHHHHHHHHHhccCCeEEEEcccc
Confidence 46777888899888889999997 6899999999863
No 375
>PRK12815 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=39.19 E-value=2.9e+02 Score=31.00 Aligned_cols=39 Identities=13% Similarity=0.298 Sum_probs=29.5
Q ss_pred CceEEEEcCCCc--cC----hHHHHHHHHHHHhCCCeEEEEeCCC
Q 046167 8 RRRVVLVPSPHQ--GH----INPMLQLGTILHSKGFSITVVHTQF 46 (424)
Q Consensus 8 ~~ril~~~~~~~--GH----~~p~~~la~~L~~~Gh~V~~~~~~~ 46 (424)
++||+++-.+.. |. =+-.+.++++|++.||+|.++...+
T Consensus 555 ~kkvLIlG~G~~rig~~~efdy~~v~~~~aLk~~G~~vI~vn~np 599 (1068)
T PRK12815 555 KKKVLILGSGPIRIGQGIEFDYSSVHAAFALKKEGYETIMINNNP 599 (1068)
T ss_pred CceEEEecccccccccccccchhHHHHHHHHHHcCCEEEEEeCCc
Confidence 468888876532 32 2478899999999999999887753
No 376
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=39.12 E-value=37 Score=31.35 Aligned_cols=32 Identities=19% Similarity=0.359 Sum_probs=25.3
Q ss_pred ceEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCC
Q 046167 9 RRVVLVPSPHQGHINPMLQLGTILHSKGFSITVVHTQ 45 (424)
Q Consensus 9 ~ril~~~~~~~GH~~p~~~la~~L~~~Gh~V~~~~~~ 45 (424)
|||.++-.|..| ..+|..|.+.||+|+++...
T Consensus 1 m~I~IiG~G~~G-----~~~a~~L~~~g~~V~~~~r~ 32 (304)
T PRK06522 1 MKIAILGAGAIG-----GLFGAALAQAGHDVTLVARR 32 (304)
T ss_pred CEEEEECCCHHH-----HHHHHHHHhCCCeEEEEECC
Confidence 477777766665 46788899999999999873
No 377
>PRK10490 sensor protein KdpD; Provisional
Probab=38.99 E-value=38 Score=36.90 Aligned_cols=38 Identities=18% Similarity=0.288 Sum_probs=35.0
Q ss_pred CceEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCC
Q 046167 8 RRRVVLVPSPHQGHINPMLQLGTILHSKGFSITVVHTQ 45 (424)
Q Consensus 8 ~~ril~~~~~~~GH~~p~~~la~~L~~~Gh~V~~~~~~ 45 (424)
+.||++-..||-|-.+.|+.-|++|+++|++|.+-.-+
T Consensus 24 ~l~i~~g~~~gvgkt~~ml~~a~~~~~~g~dvv~g~~e 61 (895)
T PRK10490 24 KLKIFFGACAGVGKTYAMLQEAQRLRAQGLDVLVGVVE 61 (895)
T ss_pred cEEEEeecCCCCCHHHHHHHHHHHHHhCCCcEEEEEee
Confidence 68999999999999999999999999999999876554
No 378
>cd01452 VWA_26S_proteasome_subunit 26S proteasome plays a major role in eukaryotic protein breakdown, especially for ubiquitin-tagged proteins. It is an ATP-dependent protease responsible for the bulk of non-lysosomal proteolysis in eukaryotes, often using covalent modification of proteins by ubiquitylation. It consists of a 20S proteolytic core particle (CP) and a 19S regulatory particle (RP). The CP is an ATP independent peptidase consisting of hydrolyzing activities. One or both ends of CP carry the RP that confers both ubiquitin and ATP dependence to the 26S proteosome. The RP's proposed functions include recognition of substrates and translocation of these to CP for proteolysis. The RP can dissociate into a stable lid and base subcomplexes. The base is composed of three non-ATPase subunits (Rpn 1, 2 and 10). A single residue in the vWA domain of Rpn10 has been implicated to be responsible for stabilizing the lid-base association.
Probab=38.96 E-value=1.9e+02 Score=24.73 Aligned_cols=56 Identities=21% Similarity=0.326 Sum_probs=40.0
Q ss_pred e-EEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCCCCCCC----------CCCCCCceEEeCCCC
Q 046167 10 R-VVLVPSPHQGHINPMLQLGTILHSKGFSITVVHTQFNSPN----------PSNHPEFEFQSIPDG 65 (424)
Q Consensus 10 r-il~~~~~~~GH~~p~~~la~~L~~~Gh~V~~~~~~~~~~~----------~~~~~g~~~~~~~~~ 65 (424)
| |+|+..++.-|-.-...+++.|++.|-+|.+++-....+. .....+-.++.+|.+
T Consensus 109 rivi~v~S~~~~d~~~i~~~~~~lkk~~I~v~vI~~G~~~~~~~~l~~~~~~~~~~~~s~~~~~~~~ 175 (187)
T cd01452 109 RIVAFVGSPIEEDEKDLVKLAKRLKKNNVSVDIINFGEIDDNTEKLTAFIDAVNGKDGSHLVSVPPG 175 (187)
T ss_pred eEEEEEecCCcCCHHHHHHHHHHHHHcCCeEEEEEeCCCCCCHHHHHHHHHHhcCCCCceEEEeCCC
Confidence 5 7788888777766677999999999999999987533322 222245777777754
No 379
>PRK05579 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated
Probab=38.94 E-value=36 Score=33.13 Aligned_cols=21 Identities=19% Similarity=0.230 Sum_probs=18.2
Q ss_pred HHHHHHHHHhCCCeEEEEeCC
Q 046167 25 MLQLGTILHSKGFSITVVHTQ 45 (424)
Q Consensus 25 ~~~la~~L~~~Gh~V~~~~~~ 45 (424)
-.++|++|.++|++|+++..+
T Consensus 217 G~aiA~~l~~~Ga~V~~v~~~ 237 (399)
T PRK05579 217 GYALARAAARRGADVTLVSGP 237 (399)
T ss_pred HHHHHHHHHHCCCEEEEeCCC
Confidence 357999999999999999764
No 380
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=38.86 E-value=78 Score=30.60 Aligned_cols=32 Identities=13% Similarity=0.268 Sum_probs=26.7
Q ss_pred ceEEEEcCCCccChHHHHHHHHHHHhCC-CeEEEEeCC
Q 046167 9 RRVVLVPSPHQGHINPMLQLGTILHSKG-FSITVVHTQ 45 (424)
Q Consensus 9 ~ril~~~~~~~GH~~p~~~la~~L~~~G-h~V~~~~~~ 45 (424)
++|+++-.|+-|+ .+|..|+++| ++|++++..
T Consensus 2 ~~ilviGaG~Vg~-----~va~~la~~~d~~V~iAdRs 34 (389)
T COG1748 2 MKILVIGAGGVGS-----VVAHKLAQNGDGEVTIADRS 34 (389)
T ss_pred CcEEEECCchhHH-----HHHHHHHhCCCceEEEEeCC
Confidence 4788888776665 6789999999 999999885
No 381
>cd02033 BchX Chlorophyllide reductase converts chlorophylls into bacteriochlorophylls by reducing the chlorin B-ring. This family contains the X subunit of this three-subunit enzyme. Sequence and structure similarity between bchX, protochlorophyllide reductase L subunit (bchL and chlL) and nitrogenase Fe protein (nifH gene) suggest their functional similarity. Members of the BchX family serve as the unique electron donors to their respective catalytic subunits (bchN-bchB, bchY-bchZ and nitrogenase component 1). Mechanistically, they hydrolyze ATP and transfer electrons through a Fe4-S4 cluster.
Probab=38.83 E-value=64 Score=30.47 Aligned_cols=37 Identities=8% Similarity=0.180 Sum_probs=32.0
Q ss_pred ceEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCC
Q 046167 9 RRVVLVPSPHQGHINPMLQLGTILHSKGFSITVVHTQ 45 (424)
Q Consensus 9 ~ril~~~~~~~GH~~p~~~la~~L~~~Gh~V~~~~~~ 45 (424)
..|.++.-||.|-..-...||..|+++|++|.++-.+
T Consensus 32 ~ii~v~gkgG~GKSt~a~nLa~~la~~g~rVllid~D 68 (329)
T cd02033 32 QIIAIYGKGGIGKSFTLANLSYMMAQQGKRVLLIGCD 68 (329)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEee
Confidence 5567777778899888999999999999999999765
No 382
>PRK13604 luxD acyl transferase; Provisional
Probab=38.74 E-value=61 Score=30.22 Aligned_cols=36 Identities=19% Similarity=0.375 Sum_probs=29.3
Q ss_pred CceEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEe
Q 046167 8 RRRVVLVPSPHQGHINPMLQLGTILHSKGFSITVVH 43 (424)
Q Consensus 8 ~~ril~~~~~~~GH~~p~~~la~~L~~~Gh~V~~~~ 43 (424)
+.+.++++.+..++-.-+..+|+.|.++|..|..+=
T Consensus 36 ~~~~vIi~HGf~~~~~~~~~~A~~La~~G~~vLrfD 71 (307)
T PRK13604 36 KNNTILIASGFARRMDHFAGLAEYLSSNGFHVIRYD 71 (307)
T ss_pred CCCEEEEeCCCCCChHHHHHHHHHHHHCCCEEEEec
Confidence 346777777777776679999999999999998773
No 383
>KOG3062 consensus RNA polymerase II elongator associated protein [General function prediction only]
Probab=38.62 E-value=60 Score=28.68 Aligned_cols=35 Identities=20% Similarity=0.280 Sum_probs=29.3
Q ss_pred eEEEEcCCCccChHHHHHHHHHHHhCCCe-EEEEeC
Q 046167 10 RVVLVPSPHQGHINPMLQLGTILHSKGFS-ITVVHT 44 (424)
Q Consensus 10 ril~~~~~~~GH~~p~~~la~~L~~~Gh~-V~~~~~ 44 (424)
-|+|+..|..|-......|.++|+++||+ +..+..
T Consensus 3 LVvi~G~P~SGKstrA~~L~~~l~~~~~K~~v~ii~ 38 (281)
T KOG3062|consen 3 LVVICGLPCSGKSTRAVELREALKERGTKQSVRIID 38 (281)
T ss_pred eEEEeCCCCCCchhHHHHHHHHHHhhcccceEEEec
Confidence 47888899999999999999999999986 444433
No 384
>PF03853 YjeF_N: YjeF-related protein N-terminus; InterPro: IPR004443 The YjeF N-terminal domains occur either as single proteins or fusions with other domains and are commonly associated with enzymes. In bacteria and archaea, YjeF N-terminal domains are often fused to a YjeF C-terminal domain with high structural homology to the members of a ribokinase-like superfamily (see PDOC00806 from PROSITEDOC)and/or belong to operons that encode enzymes of diverse functions: pyridoxal phosphate biosynthetic protein PdxJ; phosphopanteine-protein transferase; ATP/GTP hydrolase; and pyruvate-formate lyase 1-activating enzyme. In plants, the YjeF N-terminal domain is fused to a C-terminal putative pyridoxamine 5'-phosphate oxidase. In eukaryotes, proteins that consist of (Sm)-FDF-YjeF N-terminal domains may be involved in RNA processing [, ]. The YjeF N-terminal domains represent a novel version of the Rossmann fold, one of the most common protein folds in nature observed in numerous enzyme families, that has acquired a set of catalytic residues and structural features that distinguish them from the conventional dehydrogenases. The YjeF N-terminal domain is comprised of a three-layer alpha-beta-alpha sandwich with a central beta-sheet surrounded by helices. The conservation of the acidic residues in the predicted active site of the YjeF N-terminal domains is reminiscent of the presence of such residues in the active sites of diverse hydrolases [, ].; PDB: 3K5W_A 2O8N_A 2DG2_F 3RNO_A 1JZT_B 3D3K_A 3D3J_A 3RSG_A 3RT9_A 3RRF_A ....
Probab=38.41 E-value=56 Score=27.37 Aligned_cols=36 Identities=22% Similarity=0.321 Sum_probs=25.5
Q ss_pred CceEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeC
Q 046167 8 RRRVVLVPSPHQGHINPMLQLGTILHSKGFSITVVHT 44 (424)
Q Consensus 8 ~~ril~~~~~~~GH~~p~~~la~~L~~~Gh~V~~~~~ 44 (424)
..+|++++.++. .=-=-+.+|+.|.++|++|+++..
T Consensus 25 ~~~v~il~G~Gn-NGgDgl~~AR~L~~~G~~V~v~~~ 60 (169)
T PF03853_consen 25 GPRVLILCGPGN-NGGDGLVAARHLANRGYNVTVYLV 60 (169)
T ss_dssp T-EEEEEE-SSH-HHHHHHHHHHHHHHTTCEEEEEEE
T ss_pred CCeEEEEECCCC-ChHHHHHHHHHHHHCCCeEEEEEE
Confidence 468888887752 112367899999999999999544
No 385
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=38.38 E-value=41 Score=27.85 Aligned_cols=31 Identities=23% Similarity=0.278 Sum_probs=24.6
Q ss_pred ceEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeC
Q 046167 9 RRVVLVPSPHQGHINPMLQLGTILHSKGFSITVVHT 44 (424)
Q Consensus 9 ~ril~~~~~~~GH~~p~~~la~~L~~~Gh~V~~~~~ 44 (424)
+||+++-.|.-| ...++.|.+.||+|+++.+
T Consensus 14 ~~vlVvGGG~va-----~rka~~Ll~~ga~V~VIsp 44 (157)
T PRK06719 14 KVVVIIGGGKIA-----YRKASGLKDTGAFVTVVSP 44 (157)
T ss_pred CEEEEECCCHHH-----HHHHHHHHhCCCEEEEEcC
Confidence 588888665333 6789999999999999954
No 386
>TIGR00877 purD phosphoribosylamine--glycine ligase. This enzyme appears as a monofunctional protein in prokaryotes but as part of a larger, multidomain protein in eukaryotes.
Probab=38.35 E-value=98 Score=30.27 Aligned_cols=32 Identities=16% Similarity=0.131 Sum_probs=25.0
Q ss_pred ceEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCC
Q 046167 9 RRVVLVPSPHQGHINPMLQLGTILHSKGFSITVVHTQ 45 (424)
Q Consensus 9 ~ril~~~~~~~GH~~p~~~la~~L~~~Gh~V~~~~~~ 45 (424)
|||+++-.+..+| .|++++++.|+.+++++.+
T Consensus 1 ~kiliiG~G~~~~-----~l~~~~~~~~~~~~~~~~~ 32 (423)
T TIGR00877 1 MKVLVIGNGGREH-----ALAWKLAQSPLVKYVYVAP 32 (423)
T ss_pred CEEEEECCChHHH-----HHHHHHHhCCCccEEEEEC
Confidence 5888888877755 7888898888887777664
No 387
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=38.27 E-value=38 Score=29.53 Aligned_cols=35 Identities=14% Similarity=0.247 Sum_probs=30.3
Q ss_pred EEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCC
Q 046167 11 VVLVPSPHQGHINPMLQLGTILHSKGFSITVVHTQ 45 (424)
Q Consensus 11 il~~~~~~~GH~~p~~~la~~L~~~Gh~V~~~~~~ 45 (424)
|++...|+.|-..-.-.||++|..++|+|--.+.+
T Consensus 4 iIlTGyPgsGKTtfakeLak~L~~~i~~vi~l~kd 38 (261)
T COG4088 4 IILTGYPGSGKTTFAKELAKELRQEIWRVIHLEKD 38 (261)
T ss_pred EEEecCCCCCchHHHHHHHHHHHHhhhhccccchh
Confidence 55666889999999999999999999999887663
No 388
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=38.21 E-value=1.5e+02 Score=30.21 Aligned_cols=110 Identities=11% Similarity=0.082 Sum_probs=62.3
Q ss_pred ccChHHHHHHH-HHHHhCCCeEEEEeCCCCCCCCCCCCCceEEeCCC-CCCC-----------Cc---cccccH---HHH
Q 046167 19 QGHINPMLQLG-TILHSKGFSITVVHTQFNSPNPSNHPEFEFQSIPD-GLMD-----------VN---ISARNL---VDS 79 (424)
Q Consensus 19 ~GH~~p~~~la-~~L~~~Gh~V~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~-----------~~---~~~~~~---~~~ 79 (424)
.|++.-.+.+| +.+.+.|++|.+.-+. ......+.-.+.++.++- +++- .. ....+. ...
T Consensus 36 ~~~~~~~~~~a~~~~~~~~~dviIsrG~-ta~~i~~~~~iPVv~i~~s~~Dil~al~~a~~~~~~ia~vg~~~~~~~~~~ 114 (526)
T TIGR02329 36 QLGFEDAVREIRQRLGAERCDVVVAGGS-NGAYLKSRLSLPVIVIKPTGFDVMQALARARRIASSIGVVTHQDTPPALRR 114 (526)
T ss_pred eccHHHHHHHHHHHHHhCCCcEEEECch-HHHHHHHhCCCCEEEecCChhhHHHHHHHHHhcCCcEEEEecCcccHHHHH
Confidence 36777778888 4466778988887663 332222123455555541 1110 00 111111 112
Q ss_pred HHHHHH--------hchhHHHHHHHHHHhhcCCCCCceEEEecCccchHHHHHHHhCCceEEEecc
Q 046167 80 ILLLNE--------NCREPFRNWLVQMIKEQQPGDEIVCIIYDEVMYFAEASASQLNVQSIILRTS 137 (424)
Q Consensus 80 ~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~pDlvi~d~~~~~~~~~A~~lgiP~v~~~~~ 137 (424)
+..+.. ......+..++.+++. +.++||.|. .+...|+++|++.+.+.+.
T Consensus 115 ~~~ll~~~i~~~~~~~~~e~~~~~~~l~~~-----G~~~viG~~---~~~~~A~~~gl~~ili~s~ 172 (526)
T TIGR02329 115 FQAAFNLDIVQRSYVTEEDARSCVNDLRAR-----GIGAVVGAG---LITDLAEQAGLHGVFLYSA 172 (526)
T ss_pred HHHHhCCceEEEEecCHHHHHHHHHHHHHC-----CCCEEECCh---HHHHHHHHcCCceEEEecH
Confidence 222221 1133445577777765 899999996 5578999999999988764
No 389
>TIGR01369 CPSaseII_lrg carbamoyl-phosphate synthase, large subunit. In several thermophilic species (Methanobacterium thermoautotrophicum, Methanococcus jannaschii, Aquifex aeolicus), the large subunit appears split, at different points, into two separate genes.
Probab=38.06 E-value=2.3e+02 Score=31.62 Aligned_cols=38 Identities=13% Similarity=0.246 Sum_probs=29.3
Q ss_pred CceEEEEcCCCc--cCh----HHHHHHHHHHHhCCCeEEEEeCC
Q 046167 8 RRRVVLVPSPHQ--GHI----NPMLQLGTILHSKGFSITVVHTQ 45 (424)
Q Consensus 8 ~~ril~~~~~~~--GH~----~p~~~la~~L~~~Gh~V~~~~~~ 45 (424)
++||+++..|.. |.- +..++++++|++.||+|.++...
T Consensus 554 ~~kvlvlG~G~~rig~~~efd~~~v~~i~al~~~G~~vI~v~~n 597 (1050)
T TIGR01369 554 KKKVLVLGSGPNRIGQGVEFDYCCVHAVLALRELGYETIMINYN 597 (1050)
T ss_pred CceEEEecCcccccccccccchHHHHHHHHHHhCCCEEEEEecC
Confidence 468888876643 432 46789999999999999988774
No 390
>TIGR01286 nifK nitrogenase molybdenum-iron protein beta chain. This model represents the majority of known sequences of the nitrogenase molybdenum-iron protein beta subunit. A distinct clade in a phylogenetic tree contains molybdenum-iron, vanadium-iron, and iron-iron forms of nitrogenase beta subunit and is excluded from this model. Nitrogenase, also called dinitrogenase, is responsible for nitrogen fixation. Note: the trusted cutoff score has recently been lowered to include an additional family in which the beta subunit is shorter by about 50 amino acids at the N-terminus. In species with the shorter form of the beta subunit, the alpha subunit has a novel insert of similar length.
Probab=37.98 E-value=2.6e+02 Score=28.39 Aligned_cols=26 Identities=12% Similarity=0.100 Sum_probs=22.0
Q ss_pred CceEEEecCccchHHHHHHHhCCceEEEe
Q 046167 107 EIVCIIYDEVMYFAEASASQLNVQSIILR 135 (424)
Q Consensus 107 ~pDlvi~d~~~~~~~~~A~~lgiP~v~~~ 135 (424)
+||++|.+. .+..+|+++|||++.+.
T Consensus 437 ~~DlliG~s---~~k~~a~~~giPlir~g 462 (515)
T TIGR01286 437 PVDFLIGNS---YGKYIQRDTLVPLIRIG 462 (515)
T ss_pred CCCEEEECc---hHHHHHHHcCCCEEEec
Confidence 899999885 45788999999998764
No 391
>TIGR00514 accC acetyl-CoA carboxylase, biotin carboxylase subunit. This model represents the biotin carboxylase subunit found usually as a component of acetyl-CoA carboxylase. Acetyl-CoA carboxylase is designated EC 6.4.1.2 and this component, biotin carboxylase, has its own designation, EC 6.3.4.14. Homologous domains are found in eukaryotic forms of acetyl-CoA carboxylase and in a number of other carboxylases (e.g. pyruvate carboxylase), but seed members and trusted cutoff are selected so as to exclude these. In some systems, the biotin carboxyl carrier protein and this protein (biotin carboxylase) may be shared by different carboxyltransferases. However, this model is not intended to identify the biotin carboxylase domain of propionyl-coA carboxylase. The model should hit the full length of proteins, except for chloroplast transit peptides in plants. If it hits a domain only of a longer protein, there may be a problem with the identification.
Probab=37.96 E-value=2.2e+02 Score=28.15 Aligned_cols=31 Identities=19% Similarity=0.449 Sum_probs=24.3
Q ss_pred eEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCC
Q 046167 10 RVVLVPSPHQGHINPMLQLGTILHSKGFSITVVHTQ 45 (424)
Q Consensus 10 ril~~~~~~~GH~~p~~~la~~L~~~Gh~V~~~~~~ 45 (424)
||+++ +.|.+ .+.+++++++.|++|..+.+.
T Consensus 4 kili~---g~g~~--~~~~~~aa~~lG~~vv~~~~~ 34 (449)
T TIGR00514 4 KILIA---NRGEI--ALRILRACKELGIKTVAVHST 34 (449)
T ss_pred eEEEe---CCCHH--HHHHHHHHHHcCCeEEEEECh
Confidence 88888 33433 678889999999999999774
No 392
>PRK12446 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed
Probab=37.89 E-value=94 Score=29.61 Aligned_cols=32 Identities=16% Similarity=0.260 Sum_probs=24.5
Q ss_pred hhccccccccccccchhh---HHHhhhcCCceeec
Q 046167 310 VLSHVAVGGFWSHCGWNS---TLESICEGVPMICM 341 (424)
Q Consensus 310 ll~~~~~~~~i~hgG~~t---~~eal~~GvP~v~~ 341 (424)
+++.-+-+++|++||+-+ +..|...|+|.++.
T Consensus 86 i~~~~kPdvvi~~Ggy~s~p~~~aa~~~~~p~~i~ 120 (352)
T PRK12446 86 RIRKLKPDVIFSKGGFVSVPVVIGGWLNRVPVLLH 120 (352)
T ss_pred HHHhcCCCEEEecCchhhHHHHHHHHHcCCCEEEE
Confidence 344333334999999986 89999999999875
No 393
>PRK08591 acetyl-CoA carboxylase biotin carboxylase subunit; Validated
Probab=37.66 E-value=2.4e+02 Score=27.88 Aligned_cols=31 Identities=16% Similarity=0.320 Sum_probs=24.2
Q ss_pred eEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCC
Q 046167 10 RVVLVPSPHQGHINPMLQLGTILHSKGFSITVVHTQ 45 (424)
Q Consensus 10 ril~~~~~~~GH~~p~~~la~~L~~~Gh~V~~~~~~ 45 (424)
|||++-.+ -+ .+.+++++++.|++|..+.+.
T Consensus 4 ~iLi~g~g---~~--a~~i~~aa~~~G~~vv~~~~~ 34 (451)
T PRK08591 4 KILIANRG---EI--ALRIIRACKELGIKTVAVHST 34 (451)
T ss_pred eEEEECCC---HH--HHHHHHHHHHcCCeEEEEcCh
Confidence 88888433 32 588899999999999998765
No 394
>PRK13230 nitrogenase reductase-like protein; Reviewed
Probab=37.61 E-value=58 Score=29.77 Aligned_cols=38 Identities=13% Similarity=0.166 Sum_probs=32.7
Q ss_pred eEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCCCC
Q 046167 10 RVVLVPSPHQGHINPMLQLGTILHSKGFSITVVHTQFN 47 (424)
Q Consensus 10 ril~~~~~~~GH~~p~~~la~~L~~~Gh~V~~~~~~~~ 47 (424)
+|.|+.=||-|-..-.+.||.+|+++|++|.++=.++.
T Consensus 3 ~i~~~gKGGVGKTT~a~nLA~~La~~G~rVLliD~Dpq 40 (279)
T PRK13230 3 KFCFYGKGGIGKSTTVCNIAAALAESGKKVLVVGCDPK 40 (279)
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHhCCCEEEEEeeCCc
Confidence 67788777889999999999999999999999966533
No 395
>PRK13236 nitrogenase reductase; Reviewed
Probab=37.51 E-value=68 Score=29.72 Aligned_cols=39 Identities=13% Similarity=0.028 Sum_probs=31.7
Q ss_pred ceE-EEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCCCC
Q 046167 9 RRV-VLVPSPHQGHINPMLQLGTILHSKGFSITVVHTQFN 47 (424)
Q Consensus 9 ~ri-l~~~~~~~GH~~p~~~la~~L~~~Gh~V~~~~~~~~ 47 (424)
+|+ .|..-||-|-..-.+.||..|+++|++|.++=.+..
T Consensus 6 ~~~~~~~GKGGVGKTt~a~NLA~~La~~G~rVLliD~D~q 45 (296)
T PRK13236 6 IRQIAFYGKGGIGKSTTSQNTLAAMAEMGQRILIVGCDPK 45 (296)
T ss_pred ceEEEEECCCcCCHHHHHHHHHHHHHHCCCcEEEEEccCC
Confidence 444 555566889999999999999999999999976533
No 396
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=37.49 E-value=69 Score=25.65 Aligned_cols=38 Identities=21% Similarity=0.281 Sum_probs=33.5
Q ss_pred CceEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCC
Q 046167 8 RRRVVLVPSPHQGHINPMLQLGTILHSKGFSITVVHTQ 45 (424)
Q Consensus 8 ~~ril~~~~~~~GH~~p~~~la~~L~~~Gh~V~~~~~~ 45 (424)
+.||++...++.+|-...-=++..|...|++|......
T Consensus 2 ~~~v~~a~~g~D~Hd~g~~iv~~~l~~~GfeVi~lg~~ 39 (132)
T TIGR00640 2 RPRILVAKMGQDGHDRGAKVIATAYADLGFDVDVGPLF 39 (132)
T ss_pred CCEEEEEeeCCCccHHHHHHHHHHHHhCCcEEEECCCC
Confidence 47999999999999888888899999999999988763
No 397
>PF05728 UPF0227: Uncharacterised protein family (UPF0227); InterPro: IPR008886 Despite being classed as uncharacterised proteins, the members of this family are almost certainly enzymes in that they contain a domain distantly related to IPR000073 from INTERPRO. One of the members of this family YqiA has been shown to be a esterase []. Other members, which include the Escherichia coli (strain K12) YcfP protein are uncharacterised.
Probab=37.42 E-value=2.6e+02 Score=23.86 Aligned_cols=31 Identities=13% Similarity=0.291 Sum_probs=23.7
Q ss_pred eEEEecCcc-chHHHHHHHhCCceEEEecchH
Q 046167 109 VCIIYDEVM-YFAEASASQLNVQSIILRTSGA 139 (424)
Q Consensus 109 Dlvi~d~~~-~~~~~~A~~lgiP~v~~~~~~~ 139 (424)
.++|..++. +.+..+|+++|+|.|.+.+...
T Consensus 61 ~~liGSSlGG~~A~~La~~~~~~avLiNPav~ 92 (187)
T PF05728_consen 61 VVLIGSSLGGFYATYLAERYGLPAVLINPAVR 92 (187)
T ss_pred eEEEEEChHHHHHHHHHHHhCCCEEEEcCCCC
Confidence 466666554 7778899999999998877643
No 398
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=36.96 E-value=68 Score=27.69 Aligned_cols=37 Identities=19% Similarity=0.353 Sum_probs=30.5
Q ss_pred ceEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCC
Q 046167 9 RRVVLVPSPHQGHINPMLQLGTILHSKGFSITVVHTQ 45 (424)
Q Consensus 9 ~ril~~~~~~~GH~~p~~~la~~L~~~Gh~V~~~~~~ 45 (424)
..|+|+-..|-|-..-...||..++.+|.+|.+++.+
T Consensus 2 ~vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D 38 (196)
T PF00448_consen 2 KVIALVGPTGVGKTTTIAKLAARLKLKGKKVALISAD 38 (196)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEES
T ss_pred EEEEEECCCCCchHhHHHHHHHHHhhccccceeecCC
Confidence 3566777778899999999999999999999999985
No 399
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=36.93 E-value=2.5e+02 Score=23.49 Aligned_cols=128 Identities=13% Similarity=0.050 Sum_probs=63.8
Q ss_pred CceEEEecCccchHHHHHHHhCCceE-EEecchHHHHHHHHhhhcccccCCCCCChhHHHHHHHhhhccCCceEEecChh
Q 046167 107 EIVCIIYDEVMYFAEASASQLNVQSI-ILRTSGAVTVVARLVLFQLKEEGYNPLKESYVQLINNAYSARTSSAVISNTIY 185 (424)
Q Consensus 107 ~pDlvi~d~~~~~~~~~A~~lgiP~v-~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (424)
+.|+++.|. .....+++.+|.|.- .++....... . +........ ...++-+-+
T Consensus 5 ~adlv~~DG--~~i~~~~~~~g~~~~~rv~g~dl~~~-l----------------------~~~~~~~~~-~ifllG~~~ 58 (172)
T PF03808_consen 5 SADLVLPDG--MPIVWAARLLGRPLPERVTGSDLFPD-L----------------------LRRAEQRGK-RIFLLGGSE 58 (172)
T ss_pred hCCEEecCC--HHHHHHHHHcCCCCCcccCHHHHHHH-H----------------------HHHHHHcCC-eEEEEeCCH
Confidence 689999996 566778888898873 3322211111 1 000111112 223333334
Q ss_pred hhhHHHHHHHHhccCCCeeeecccccCCCCCCCCCcccccccccccccCCCCeEEEEEeCCcccCCHHHHHHHHHHHHhC
Q 046167 186 CLEESVLSQLQQYFKVPNFPIGPLHKFAPSSNGSLLKEDTSCISWLNNQSPKSVIYVSLGSVASMDKKELEEMAWGLVNS 265 (424)
Q Consensus 186 ~l~~~~~~~~~~~~~~~~~~vGp~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~I~vs~Gs~~~~~~~~~~~~~~a~~~~ 265 (424)
+......+.+...+ +.+..+|-..... ...+++.+.+.++... -.+|+|++|+-- +-.-+.+-..++
T Consensus 59 ~~~~~~~~~l~~~y-P~l~ivg~~~g~f------~~~~~~~i~~~I~~~~-pdiv~vglG~Pk-----QE~~~~~~~~~l 125 (172)
T PF03808_consen 59 EVLEKAAANLRRRY-PGLRIVGYHHGYF------DEEEEEAIINRINASG-PDIVFVGLGAPK-----QERWIARHRQRL 125 (172)
T ss_pred HHHHHHHHHHHHHC-CCeEEEEecCCCC------ChhhHHHHHHHHHHcC-CCEEEEECCCCH-----HHHHHHHHHHHC
Confidence 44444555666666 4555555333221 1123444666676332 348999887433 222233344456
Q ss_pred CCCeEEEE
Q 046167 266 KQPFLWVI 273 (424)
Q Consensus 266 ~~~~i~~~ 273 (424)
+..+++.+
T Consensus 126 ~~~v~i~v 133 (172)
T PF03808_consen 126 PAGVIIGV 133 (172)
T ss_pred CCCEEEEE
Confidence 66655555
No 400
>PRK08703 short chain dehydrogenase; Provisional
Probab=36.90 E-value=58 Score=28.66 Aligned_cols=39 Identities=10% Similarity=0.221 Sum_probs=24.4
Q ss_pred CcccCCCCceEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCC
Q 046167 1 MEEQGQRRRRVVLVPSPHQGHINPMLQLGTILHSKGFSITVVHTQ 45 (424)
Q Consensus 1 ~~~m~~~~~ril~~~~~~~GH~~p~~~la~~L~~~Gh~V~~~~~~ 45 (424)
|..|..+ +++++ +++ |-+ -..+++.|.++|++|.++...
T Consensus 1 ~~~l~~k--~vlIt-G~s-ggi--G~~la~~l~~~g~~V~~~~r~ 39 (239)
T PRK08703 1 MATLSDK--TILVT-GAS-QGL--GEQVAKAYAAAGATVILVARH 39 (239)
T ss_pred CCCCCCC--EEEEE-CCC-CcH--HHHHHHHHHHcCCEEEEEeCC
Confidence 5666543 55554 322 221 235899999999999887653
No 401
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=36.79 E-value=2.2e+02 Score=24.92 Aligned_cols=106 Identities=12% Similarity=-0.012 Sum_probs=62.8
Q ss_pred HHHHHHhhcCCCCCceEEEecCccchHHHHHHHhCCceEEEecchHHHHHHHHhhhcccccCCCCCChhHHHHHHHhhhc
Q 046167 94 WLVQMIKEQQPGDEIVCIIYDEVMYFAEASASQLNVQSIILRTSGAVTVVARLVLFQLKEEGYNPLKESYVQLINNAYSA 173 (424)
Q Consensus 94 ~~~~~~~~~~~~~~pDlvi~d~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~ 173 (424)
.++...+. +.+++|+-.+.......|+..|+|++.=..++....... .
T Consensus 80 ~~~~a~~a-----GA~FivsP~~~~~v~~~~~~~~i~~iPG~~T~~E~~~A~---------------------------~ 127 (213)
T PRK06552 80 TARLAILA-----GAQFIVSPSFNRETAKICNLYQIPYLPGCMTVTEIVTAL---------------------------E 127 (213)
T ss_pred HHHHHHHc-----CCCEEECCCCCHHHHHHHHHcCCCEECCcCCHHHHHHHH---------------------------H
Confidence 44555554 899999888778888999999999996444433222221 1
Q ss_pred cCCceEEecChhhhhHHHHHHHHhccC-CCeeeecccccCCCCCCCCCcccccccccccccCCCCeEEEEEeCCcc
Q 046167 174 RTSSAVISNTIYCLEESVLSQLQQYFK-VPNFPIGPLHKFAPSSNGSLLKEDTSCISWLNNQSPKSVIYVSLGSVA 248 (424)
Q Consensus 174 ~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~~vGp~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~I~vs~Gs~~ 248 (424)
...+.+-+-....+...++..+...++ .|+..+|.+...+ +.+|+... ...++.||..
T Consensus 128 ~Gad~vklFPa~~~G~~~ik~l~~~~p~ip~~atGGI~~~N-------------~~~~l~aG----a~~vavgs~l 186 (213)
T PRK06552 128 AGSEIVKLFPGSTLGPSFIKAIKGPLPQVNVMVTGGVNLDN-------------VKDWFAAG----ADAVGIGGEL 186 (213)
T ss_pred cCCCEEEECCcccCCHHHHHHHhhhCCCCEEEEECCCCHHH-------------HHHHHHCC----CcEEEEchHH
Confidence 122222221011233555666666665 5688888887542 56677733 4556666654
No 402
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=36.62 E-value=42 Score=33.16 Aligned_cols=32 Identities=22% Similarity=0.435 Sum_probs=23.9
Q ss_pred ceEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCC
Q 046167 9 RRVVLVPSPHQGHINPMLQLGTILHSKGFSITVVHTQ 45 (424)
Q Consensus 9 ~ril~~~~~~~GH~~p~~~la~~L~~~Gh~V~~~~~~ 45 (424)
++++++.. |. .- .++|+.|+++||+|++....
T Consensus 6 k~v~iiG~---g~-~G-~~~A~~l~~~G~~V~~~d~~ 37 (450)
T PRK14106 6 KKVLVVGA---GV-SG-LALAKFLKKLGAKVILTDEK 37 (450)
T ss_pred CEEEEECC---CH-HH-HHHHHHHHHCCCEEEEEeCC
Confidence 47777743 33 22 48999999999999998664
No 403
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=36.51 E-value=68 Score=27.16 Aligned_cols=36 Identities=17% Similarity=0.370 Sum_probs=29.7
Q ss_pred ceEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeC
Q 046167 9 RRVVLVPSPHQGHINPMLQLGTILHSKGFSITVVHT 44 (424)
Q Consensus 9 ~ril~~~~~~~GH~~p~~~la~~L~~~Gh~V~~~~~ 44 (424)
..++|+..+|.|-..=..++++++.++|+.|.|+..
T Consensus 48 ~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~ 83 (178)
T PF01695_consen 48 ENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITA 83 (178)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEH
T ss_pred eEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeec
Confidence 578888888999888899999999999999999976
No 404
>PRK08760 replicative DNA helicase; Provisional
Probab=36.31 E-value=1.6e+02 Score=29.57 Aligned_cols=36 Identities=14% Similarity=0.226 Sum_probs=29.4
Q ss_pred eEEEEcCCCccChHHHHHHHHHHHh-CCCeEEEEeCC
Q 046167 10 RVVLVPSPHQGHINPMLQLGTILHS-KGFSITVVHTQ 45 (424)
Q Consensus 10 ril~~~~~~~GH~~p~~~la~~L~~-~Gh~V~~~~~~ 45 (424)
=+++...|+.|-..=.+.+|...+. .|+.|.|++-+
T Consensus 231 LivIaarPg~GKTafal~iA~~~a~~~g~~V~~fSlE 267 (476)
T PRK08760 231 LIILAARPAMGKTTFALNIAEYAAIKSKKGVAVFSME 267 (476)
T ss_pred eEEEEeCCCCChhHHHHHHHHHHHHhcCCceEEEecc
Confidence 3466678899999999999988864 59999999775
No 405
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=36.30 E-value=45 Score=23.01 Aligned_cols=20 Identities=25% Similarity=0.351 Sum_probs=17.0
Q ss_pred HHHHHHHHHhCCCeEEEEeC
Q 046167 25 MLQLGTILHSKGFSITVVHT 44 (424)
Q Consensus 25 ~~~la~~L~~~Gh~V~~~~~ 44 (424)
-+..|..|+++|++|+++=.
T Consensus 8 Gl~aA~~L~~~g~~v~v~E~ 27 (68)
T PF13450_consen 8 GLAAAYYLAKAGYRVTVFEK 27 (68)
T ss_dssp HHHHHHHHHHTTSEEEEEES
T ss_pred HHHHHHHHHHCCCcEEEEec
Confidence 36778999999999999965
No 406
>PRK02649 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=36.29 E-value=46 Score=31.03 Aligned_cols=52 Identities=15% Similarity=0.194 Sum_probs=36.7
Q ss_pred ccccccccchhhHHHhhhc----CCceeecCcccchhhHHHHHHhhhhcceecCcccchHHHHHHHHHHhcc
Q 046167 316 VGGFWSHCGWNSTLESICE----GVPMICMPFFEDQKVNARYLSHVWGVGLELEHELERGAVEKAVRKLTVD 383 (424)
Q Consensus 316 ~~~~i~hgG~~t~~eal~~----GvP~v~~P~~~DQ~~na~~~~~~~G~g~~~~~~~~~~~L~~ai~~ll~~ 383 (424)
++++|+-||=||++.+... ++|++.+-. + .+| .+. ..+++++.+++++++++
T Consensus 69 ~Dlvi~iGGDGTlL~aar~~~~~~iPilGIN~-------------G-~lG-FLt-~~~~~~~~~~l~~l~~g 124 (305)
T PRK02649 69 MKFAIVLGGDGTVLSAARQLAPCGIPLLTINT-------------G-HLG-FLT-EAYLNQLDEAIDQVLAG 124 (305)
T ss_pred cCEEEEEeCcHHHHHHHHHhcCCCCcEEEEeC-------------C-CCc-ccc-cCCHHHHHHHHHHHHcC
Confidence 4459999999999998764 778887632 1 222 111 35778888888888876
No 407
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=36.10 E-value=4.1e+02 Score=25.64 Aligned_cols=35 Identities=20% Similarity=0.318 Sum_probs=29.4
Q ss_pred EEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCC
Q 046167 11 VVLVPSPHQGHINPMLQLGTILHSKGFSITVVHTQ 45 (424)
Q Consensus 11 il~~~~~~~GH~~p~~~la~~L~~~Gh~V~~~~~~ 45 (424)
+++...|+.|-..=++.+|..+.++|..|.|++.+
T Consensus 85 vLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs~E 119 (372)
T cd01121 85 ILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVSGE 119 (372)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEECC
Confidence 45555668899888999999999999999999874
No 408
>TIGR02193 heptsyl_trn_I lipopolysaccharide heptosyltransferase I. This family consists of examples of ADP-heptose:LPS heptosyltransferase I, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=36.09 E-value=2.9e+02 Score=25.55 Aligned_cols=98 Identities=10% Similarity=0.092 Sum_probs=54.5
Q ss_pred ceEEEEcCCCc-cChH---HHHHHHHHHHhCCCeEEEEeCCCCC-CCCCCCCCceEEeCCCCCCCCccccccHHHHHHHH
Q 046167 9 RRVVLVPSPHQ-GHIN---PMLQLGTILHSKGFSITVVHTQFNS-PNPSNHPEFEFQSIPDGLMDVNISARNLVDSILLL 83 (424)
Q Consensus 9 ~ril~~~~~~~-GH~~---p~~~la~~L~~~Gh~V~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (424)
..|++.++.+. .=.. -+..|++.|.++|+++.++.+.... +... .+. +..+. . .+
T Consensus 180 ~~i~i~~gas~~~K~wp~e~~~~l~~~l~~~~~~~vl~~g~~~e~~~~~---~i~-----~~~~~-----~-------~l 239 (319)
T TIGR02193 180 PYAVLLHATSRDDKTWPEERWRELARLLLARGLQIVLPWGNDAEKQRAE---RIA-----EALPG-----A-------VV 239 (319)
T ss_pred CEEEEEeCCCcccCCCCHHHHHHHHHHHHHCCCeEEEeCCCHHHHHHHH---HHH-----hhCCC-----C-------ee
Confidence 45666665432 1112 3678999998889988876442111 1100 000 00000 0 00
Q ss_pred HHhchhHHHHHHHHHHhhcCCCCCceEEEecCccchHHHHHHHhCCceEEEecc
Q 046167 84 NENCREPFRNWLVQMIKEQQPGDEIVCIIYDEVMYFAEASASQLNVQSIILRTS 137 (424)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~pDlvi~d~~~~~~~~~A~~lgiP~v~~~~~ 137 (424)
.....+.++..-+. +.|++|+.- .+..++|..+|+|++.+...
T Consensus 240 --~g~~sL~el~ali~-------~a~l~I~~D--Sgp~HlAaa~g~P~i~lfg~ 282 (319)
T TIGR02193 240 --LPKMSLAEVAALLA-------GADAVVGVD--TGLTHLAAALDKPTVTLYGA 282 (319)
T ss_pred --cCCCCHHHHHHHHH-------cCCEEEeCC--ChHHHHHHHcCCCEEEEECC
Confidence 11224555555554 789999864 56778999999999988653
No 409
>cd01967 Nitrogenase_MoFe_alpha_like Nitrogenase_MoFe_alpha_like: Nitrogenase MoFe protein, alpha subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. Three genetically distinct types of nitrogenase systems are known to exist: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). This group contains the alpha subunit of component 1 of all three different forms. The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. The role of the delta subunit is unknown. For MoFe, each alphabeta pair of subunits contains one
Probab=36.03 E-value=2.8e+02 Score=26.91 Aligned_cols=27 Identities=15% Similarity=0.063 Sum_probs=21.5
Q ss_pred CceEEEecCccchHHHHHHHhCCceEEEec
Q 046167 107 EIVCIIYDEVMYFAEASASQLNVQSIILRT 136 (424)
Q Consensus 107 ~pDlvi~d~~~~~~~~~A~~lgiP~v~~~~ 136 (424)
+||++|... .....|+++|+|++....
T Consensus 355 ~pdl~ig~~---~~~~~a~~~gip~~~~~~ 381 (406)
T cd01967 355 KPDLILSGI---KEKYVAQKLGIPFLDLHS 381 (406)
T ss_pred CCCEEEeCC---cchHHHHhcCCCEEecCC
Confidence 899999886 345788899999986543
No 410
>PF05014 Nuc_deoxyrib_tr: Nucleoside 2-deoxyribosyltransferase; InterPro: IPR007710 Nucleoside 2-deoxyribosyltransferase (2.4.2.6 from EC) catalyses the cleavage of the glycosidic bonds of 2-deoxyribonucleosides. Nucleoside 2-deoxyribosyltransferases can be divided into two groups based on their substrate specificity: class I enzymes are specific for the transfer of deoxyribose between two purines, while class II enzymes will transfer the deoxyribose between either purines or pyrimidines. The structure of the class I [] and class II [] enzymes are very similar. In class I enzymes, the purine base shields the active site from solvent, which the smaller pyrimidine base cannot do, while in class II enzymes the active site is shielded by a loop (residues 48-62). Both classes of enzymes are found in various Lactobacillus species and participate in nucleoside recycling in these microorganisms. This entry represents both classes of enzymes.; GO: 0050144 nucleoside deoxyribosyltransferase activity, 0070694 deoxyribonucleoside 5'-monophosphate N-glycosidase activity, 0009159 deoxyribonucleoside monophosphate catabolic process; PDB: 1S2L_A 1S2D_C 1S2I_A 1S3F_B 1S2G_C 2A0K_A 2F67_A 2F64_B 2F62_A 2F2T_A ....
Probab=36.02 E-value=62 Score=24.87 Aligned_cols=36 Identities=14% Similarity=-0.001 Sum_probs=24.6
Q ss_pred hhhcccccccccccc---chhhHHHh---hhcCCceeecCcc
Q 046167 309 EVLSHVAVGGFWSHC---GWNSTLES---ICEGVPMICMPFF 344 (424)
Q Consensus 309 ~ll~~~~~~~~i~hg---G~~t~~ea---l~~GvP~v~~P~~ 344 (424)
..+..|++-.++-.+ +.||..|. .+.|+|++++-..
T Consensus 57 ~~i~~~D~via~l~~~~~d~Gt~~ElG~A~algkpv~~~~~d 98 (113)
T PF05014_consen 57 EGIRECDIVIANLDGFRPDSGTAFELGYAYALGKPVILLTED 98 (113)
T ss_dssp HHHHHSSEEEEEECSSS--HHHHHHHHHHHHTTSEEEEEECC
T ss_pred HHHHHCCEEEEECCCCCCCCcHHHHHHHHHHCCCEEEEEEcC
Confidence 356667764455555 78999885 6789999987543
No 411
>PF01497 Peripla_BP_2: Periplasmic binding protein; InterPro: IPR002491 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). Most bacterial importers employ a periplasmic substrate-binding protein (PBP) that delivers the ligand to the extracellular gate of the TM domains. These proteins bind their substrates selectively and with high affinity, which is thought to ensure the specificity of the transport reaction. Binding proteins in Gram-negative bacteria are present within the periplasm, whereas those in Gram-positive bacteria are tethered to the cell membrane via the acylation of a cysteine residue that is an integral component of a lipoprotein signal sequence. In planta expression of a high-affinity iron-uptake system involving the siderophore chrysobactin in Erwinia chrysanthemi 3937 contributes greatly to invasive growth of this pathogen on its natural host, African violets []. The cobalamin (vitamin B12) and the iron transport systems share many common attributes and probably evolved from the same origin [, ]. The periplasmic-binding domain is composed of two subdomains, each consisting of a central beta-sheet and surrounding alpha-helices, linked by a rigid alpha-helix. The substrate binding site is located in a cleft between the two alpha/beta subdomains [].; GO: 0005488 binding; PDB: 2X4L_A 1N4A_B 1N2Z_B 1N4D_B 4DBL_J 2QI9_F 3EIW_A 3EIX_A 3MWG_A 3MWF_A ....
Probab=35.94 E-value=57 Score=28.64 Aligned_cols=32 Identities=9% Similarity=0.022 Sum_probs=23.2
Q ss_pred CceEEEecCcc--chHHHHHHHhCCceEEEecch
Q 046167 107 EIVCIIYDEVM--YFAEASASQLNVQSIILRTSG 138 (424)
Q Consensus 107 ~pDlvi~d~~~--~~~~~~A~~lgiP~v~~~~~~ 138 (424)
+|||||..... .....-....++|++.+....
T Consensus 60 ~PDlIi~~~~~~~~~~~~~~~~~~ip~~~~~~~~ 93 (238)
T PF01497_consen 60 KPDLIIGSSFYGQSEEIEKLLEAGIPVVVFDSSS 93 (238)
T ss_dssp --SEEEEETTSSCHHHHHHHHHTTSEEEEESSTT
T ss_pred CCCEEEEeccccchHHHHHHhcccceEEEeeccc
Confidence 89999998755 455566667799999987765
No 412
>TIGR01918 various_sel_PB selenoprotein B, glycine/betaine/sarcosine/D-proline reductase family. This model represents selenoprotein B of glycine reductase, sarcosine reductase, betaine reductase, D-proline reductase, and perhaps others. This model is built in fragment mode to assist in recognizing fragmentary translations. All members are expected to contain an internal TGA codon, encoding selenocysteine, which may be misinterpreted as a stop codon.
Probab=35.83 E-value=54 Score=31.82 Aligned_cols=43 Identities=19% Similarity=0.256 Sum_probs=25.1
Q ss_pred cccccchhhHHHhhhcCCceeecCccc--chhhHHHHHHhhhhccee
Q 046167 319 FWSHCGWNSTLESICEGVPMICMPFFE--DQKVNARYLSHVWGVGLE 363 (424)
Q Consensus 319 ~i~hgG~~t~~eal~~GvP~v~~P~~~--DQ~~na~~~~~~~G~g~~ 363 (424)
..|.+|..-+.|-=.+|+|+|.+-..- -+..-|.|+.. ++++.
T Consensus 348 tC~r~~a~m~keiE~~GiPvv~~~~~~pis~tvGanrivp--~~~ip 392 (431)
T TIGR01918 348 TCTRCGATMVKEIERAGIPVVHMCTVIPIALTVGANRIVP--TIAIP 392 (431)
T ss_pred cchhHHHHHHHHHHHcCCCEEEEeecccHhhhcCccceec--ccCcC
Confidence 455566666666677999999764322 22333566665 44443
No 413
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=35.72 E-value=1.7e+02 Score=27.71 Aligned_cols=31 Identities=19% Similarity=0.322 Sum_probs=24.8
Q ss_pred ceEEEEcCCCccChHHHHHHHHHHHhCCC-eEEEEeC
Q 046167 9 RRVVLVPSPHQGHINPMLQLGTILHSKGF-SITVVHT 44 (424)
Q Consensus 9 ~ril~~~~~~~GH~~p~~~la~~L~~~Gh-~V~~~~~ 44 (424)
.||+++-.|+.| -.+|+.|++.|+ +++++=.
T Consensus 25 ~~VlIiG~GglG-----s~va~~La~aGvg~i~lvD~ 56 (338)
T PRK12475 25 KHVLIVGAGALG-----AANAEALVRAGIGKLTIADR 56 (338)
T ss_pred CcEEEECCCHHH-----HHHHHHHHHcCCCEEEEEcC
Confidence 589999888776 578999999998 6666644
No 414
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=35.63 E-value=76 Score=29.03 Aligned_cols=37 Identities=16% Similarity=0.267 Sum_probs=31.9
Q ss_pred ceEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCC
Q 046167 9 RRVVLVPSPHQGHINPMLQLGTILHSKGFSITVVHTQ 45 (424)
Q Consensus 9 ~ril~~~~~~~GH~~p~~~la~~L~~~Gh~V~~~~~~ 45 (424)
..|+|+..+|.|-..-...||..|+++|++|.+++.+
T Consensus 73 ~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~~D 109 (272)
T TIGR00064 73 NVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAGD 109 (272)
T ss_pred eEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 4556666668899999999999999999999999986
No 415
>TIGR01917 gly_red_sel_B glycine reductase, selenoprotein B. Glycine reductase is a complex with two selenoprotein subunits, A and B. This model represents the glycine reductase selenoprotein B. Closely related to it, but excluded from this model, are selenoprotein B subunits of betaine reductase and sarcosine reductase. All contain selenocysteine incorporated during translation at a specific UGA codon.
Probab=35.51 E-value=63 Score=31.34 Aligned_cols=29 Identities=10% Similarity=0.074 Sum_probs=20.8
Q ss_pred CceEEEecCccc-------hHH---HHHHHhCCceEEEe
Q 046167 107 EIVCIIYDEVMY-------FAE---ASASQLNVQSIILR 135 (424)
Q Consensus 107 ~pDlvi~d~~~~-------~~~---~~A~~lgiP~v~~~ 135 (424)
+||++|+.+.+. |+. .+.++++||.++-.
T Consensus 76 ~pDv~iaGPaFNagrYG~acg~va~aV~e~~~IP~vtaM 114 (431)
T TIGR01917 76 NPDIFIAGPAFNAGRYGMAAGAITKAVQDELGIKAFTAM 114 (431)
T ss_pred CCCEEEEcCccCCccHHHHHHHHHHHHHHhhCCCeEEEe
Confidence 899999987662 111 34567999998754
No 416
>PF13433 Peripla_BP_5: Periplasmic binding protein domain; PDB: 1QNL_A 1QO0_A 1PEA_A.
Probab=35.43 E-value=1.2e+02 Score=29.07 Aligned_cols=55 Identities=13% Similarity=0.012 Sum_probs=29.0
Q ss_pred ceEEEEcCCCccChHHHHHHHHHHH-hCCCeEEEEeCCCCCC-----CCCCCCCceEEeCC
Q 046167 9 RRVVLVPSPHQGHINPMLQLGTILH-SKGFSITVVHTQFNSP-----NPSNHPEFEFQSIP 63 (424)
Q Consensus 9 ~ril~~~~~~~GH~~p~~~la~~L~-~~Gh~V~~~~~~~~~~-----~~~~~~g~~~~~~~ 63 (424)
++|-.+-....|+..-+...|+.|. +.|.++.|-|.-+... ..++..++-|.+..
T Consensus 40 ~~le~v~~Dp~Sd~~~ya~~A~~Li~~d~V~~ifGc~TSasRKaVlPvvE~~~~LL~Yp~~ 100 (363)
T PF13433_consen 40 RQLEPVIYDPASDPSTYAEKAEKLIREDGVRAIFGCYTSASRKAVLPVVERHNALLFYPTQ 100 (363)
T ss_dssp B--EEEEE--TT-HHHHHHHHHHHHHHS---EEEE--SHHHHHHHHHHHHHCT-EEEE-S-
T ss_pred eEEEEEEECCCCCHHHHHHHHHHHHHhCCccEEEecchhhhHHHHHHHHHhcCceEEeccc
Confidence 5777777888999999999999995 4788888877632221 13444566666554
No 417
>cd02117 NifH_like This family contains the NifH (iron protein) of nitrogenase, L subunit (BchL/ChlL) of the protochlorophyllide reductase and the BchX subunit of the Chlorophyllide reductase. Members of this family use energey from ATP hydrolysis and transfer electrons through a Fe4-S4 cluster to other subunit for reduction of substrate.
Probab=35.37 E-value=68 Score=27.87 Aligned_cols=36 Identities=14% Similarity=0.150 Sum_probs=30.7
Q ss_pred eEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCC
Q 046167 10 RVVLVPSPHQGHINPMLQLGTILHSKGFSITVVHTQ 45 (424)
Q Consensus 10 ril~~~~~~~GH~~p~~~la~~L~~~Gh~V~~~~~~ 45 (424)
+|.++.-||-|-..-...||..|+++|++|.++=.+
T Consensus 2 ~iav~gKGGvGKTt~~~nLA~~la~~G~rvLliD~D 37 (212)
T cd02117 2 QIAIYGKGGIGKSTTSQNLSAALAEMGKKVLQVGCD 37 (212)
T ss_pred EEEEECCCcCcHHHHHHHHHHHHHHCCCcEEEEeCC
Confidence 466666778899999999999999999999988554
No 418
>PRK07067 sorbitol dehydrogenase; Provisional
Probab=35.36 E-value=71 Score=28.47 Aligned_cols=33 Identities=12% Similarity=0.208 Sum_probs=22.3
Q ss_pred eEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCC
Q 046167 10 RVVLVPSPHQGHINPMLQLGTILHSKGFSITVVHTQ 45 (424)
Q Consensus 10 ril~~~~~~~GH~~p~~~la~~L~~~Gh~V~~~~~~ 45 (424)
|.+++++++ |.+ -.++|+.|.++|++|.++...
T Consensus 7 ~~vlItGas-~~i--G~~ia~~l~~~G~~v~~~~r~ 39 (257)
T PRK07067 7 KVALLTGAA-SGI--GEAVAERYLAEGARVVIADIK 39 (257)
T ss_pred CEEEEeCCC-chH--HHHHHHHHHHcCCEEEEEcCC
Confidence 344455432 322 368999999999999988653
No 419
>PRK04328 hypothetical protein; Provisional
Probab=35.22 E-value=3.3e+02 Score=24.37 Aligned_cols=36 Identities=19% Similarity=-0.053 Sum_probs=27.1
Q ss_pred eEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCC
Q 046167 10 RVVLVPSPHQGHINPMLQLGTILHSKGFSITVVHTQ 45 (424)
Q Consensus 10 ril~~~~~~~GH~~p~~~la~~L~~~Gh~V~~~~~~ 45 (424)
-+++...|+.|-..=.+.++.+-.++|+.+.|++..
T Consensus 25 ~ili~G~pGsGKT~l~~~fl~~~~~~ge~~lyis~e 60 (249)
T PRK04328 25 VVLLSGGPGTGKSIFSQQFLWNGLQMGEPGVYVALE 60 (249)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEEee
Confidence 345566668888776777776666789999999985
No 420
>PRK13194 pyrrolidone-carboxylate peptidase; Provisional
Probab=35.19 E-value=1e+02 Score=26.94 Aligned_cols=27 Identities=22% Similarity=0.320 Sum_probs=20.6
Q ss_pred ceEEEEcCCCcc--ChHHHHHHHHHHHhC
Q 046167 9 RRVVLVPSPHQG--HINPMLQLGTILHSK 35 (424)
Q Consensus 9 ~ril~~~~~~~G--H~~p~~~la~~L~~~ 35 (424)
||||+..|+-+| ..||...++++|...
T Consensus 1 M~ILvTGF~PF~~~~~NPS~~~~~~L~~~ 29 (208)
T PRK13194 1 MKVLVTGFEPFGGDKKNPTMDIVKALDGK 29 (208)
T ss_pred CEEEEEeeCCCCCCCCCcHHHHHHhcccc
Confidence 578888776443 489999999999663
No 421
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=35.15 E-value=3e+02 Score=23.81 Aligned_cols=143 Identities=13% Similarity=0.046 Sum_probs=69.5
Q ss_pred CCCeEEEEEeCCcccCCHHHHHHHHHHHHhCCCCeEEEEcCCCCCCCcccccCchhHHHHhc-CCCceeeecchhhhhcc
Q 046167 235 SPKSVIYVSLGSVASMDKKELEEMAWGLVNSKQPFLWVIRPRTNNAPEGIELLPKVLAEDVQ-ENGYIVKWAPQKEVLSH 313 (424)
Q Consensus 235 ~~~~~I~vs~Gs~~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~-~nv~v~~~ip~~~ll~~ 313 (424)
..+.++.|+.|.++ ...+..|.+.+..+.++. .. ..+.+.+..+ ..+...........+..
T Consensus 9 ~~k~vLVIGgG~va-------~~ka~~Ll~~ga~V~VIs-~~----------~~~~l~~l~~~~~i~~~~~~~~~~~l~~ 70 (202)
T PRK06718 9 SNKRVVIVGGGKVA-------GRRAITLLKYGAHIVVIS-PE----------LTENLVKLVEEGKIRWKQKEFEPSDIVD 70 (202)
T ss_pred CCCEEEEECCCHHH-------HHHHHHHHHCCCeEEEEc-CC----------CCHHHHHHHhCCCEEEEecCCChhhcCC
Confidence 44668888766554 223455666676665443 11 2223222222 22333333333445655
Q ss_pred ccccccccccchhhHHHhh----hcCCceeecCcccchhhH-----HHHHHhhhhcceecCc----ccchHHHHHHHHHH
Q 046167 314 VAVGGFWSHCGWNSTLESI----CEGVPMICMPFFEDQKVN-----ARYLSHVWGVGLELEH----ELERGAVEKAVRKL 380 (424)
Q Consensus 314 ~~~~~~i~hgG~~t~~eal----~~GvP~v~~P~~~DQ~~n-----a~~~~~~~G~g~~~~~----~~~~~~L~~ai~~l 380 (424)
+++ +|.--+...+.+.+ ..++++-++ |.+.. ...+.++ ++-+.+.. ..-+..|++.|+++
T Consensus 71 adl--ViaaT~d~elN~~i~~~a~~~~lvn~~----d~~~~~~f~~Pa~~~~g-~l~iaIsT~G~sP~la~~lr~~ie~~ 143 (202)
T PRK06718 71 AFL--VIAATNDPRVNEQVKEDLPENALFNVI----TDAESGNVVFPSALHRG-KLTISVSTDGASPKLAKKIRDELEAL 143 (202)
T ss_pred ceE--EEEcCCCHHHHHHHHHHHHhCCcEEEC----CCCccCeEEEeeEEEcC-CeEEEEECCCCChHHHHHHHHHHHHH
Confidence 565 77766654444433 345554443 33222 2223332 33333332 23346677777777
Q ss_pred hcccchHHHHHHHHHHHHHHHHH
Q 046167 381 TVDKEGEFLRQRAAQLKEEVELS 403 (424)
Q Consensus 381 l~~~~~~~~~~~a~~l~~~~~~~ 403 (424)
+.. +...+-+.+.++++.+++.
T Consensus 144 ~~~-~~~~~~~~~~~~R~~~k~~ 165 (202)
T PRK06718 144 YDE-SYESYIDFLYECRQKIKEL 165 (202)
T ss_pred cch-hHHHHHHHHHHHHHHHHHh
Confidence 622 2245666667777776654
No 422
>PRK07454 short chain dehydrogenase; Provisional
Probab=35.13 E-value=87 Score=27.51 Aligned_cols=35 Identities=11% Similarity=0.165 Sum_probs=24.2
Q ss_pred CceEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCC
Q 046167 8 RRRVVLVPSPHQGHINPMLQLGTILHSKGFSITVVHTQ 45 (424)
Q Consensus 8 ~~ril~~~~~~~GH~~p~~~la~~L~~~Gh~V~~~~~~ 45 (424)
.+|.++++++ .|.+ -..++++|.++|++|.++...
T Consensus 5 ~~k~vlItG~-sg~i--G~~la~~l~~~G~~V~~~~r~ 39 (241)
T PRK07454 5 SMPRALITGA-SSGI--GKATALAFAKAGWDLALVARS 39 (241)
T ss_pred CCCEEEEeCC-CchH--HHHHHHHHHHCCCEEEEEeCC
Confidence 3566666653 3332 357899999999999998763
No 423
>PRK06111 acetyl-CoA carboxylase biotin carboxylase subunit; Validated
Probab=35.07 E-value=3.1e+02 Score=27.04 Aligned_cols=31 Identities=6% Similarity=0.168 Sum_probs=24.3
Q ss_pred eEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCC
Q 046167 10 RVVLVPSPHQGHINPMLQLGTILHSKGFSITVVHTQ 45 (424)
Q Consensus 10 ril~~~~~~~GH~~p~~~la~~L~~~Gh~V~~~~~~ 45 (424)
||+++-.+-. .+.+++++++.|++|..+.+.
T Consensus 4 ~ililg~g~~-----~~~~~~~a~~lG~~~v~~~~~ 34 (450)
T PRK06111 4 KVLIANRGEI-----AVRIIRTCQKLGIRTVAIYSE 34 (450)
T ss_pred eEEEECCcHH-----HHHHHHHHHHcCCeEEEEech
Confidence 8888765433 377888999999999998764
No 424
>CHL00076 chlB photochlorophyllide reductase subunit B
Probab=35.04 E-value=54 Score=33.16 Aligned_cols=26 Identities=12% Similarity=0.196 Sum_probs=21.6
Q ss_pred CceEEEecCccchHHHHHHHhCCceEEEe
Q 046167 107 EIVCIIYDEVMYFAEASASQLNVQSIILR 135 (424)
Q Consensus 107 ~pDlvi~d~~~~~~~~~A~~lgiP~v~~~ 135 (424)
+||+||.+. ....+|+++|||++.++
T Consensus 374 ~pdliiGs~---~er~ia~~lgiP~~~is 399 (513)
T CHL00076 374 EPSAIFGTQ---MERHIGKRLDIPCGVIS 399 (513)
T ss_pred CCCEEEECc---hhhHHHHHhCCCEEEee
Confidence 899999986 44556899999998775
No 425
>PF04244 DPRP: Deoxyribodipyrimidine photo-lyase-related protein; InterPro: IPR007357 This family appears to be related to DNA photolyases.; PDB: 3ZXS_A.
Probab=35.03 E-value=39 Score=29.90 Aligned_cols=25 Identities=20% Similarity=0.432 Sum_probs=19.2
Q ss_pred ChHHHHHHHHHHHhCCCeEEEEeCC
Q 046167 21 HINPMLQLGTILHSKGFSITVVHTQ 45 (424)
Q Consensus 21 H~~p~~~la~~L~~~Gh~V~~~~~~ 45 (424)
|...|.+.|.+|+++||+|.++..+
T Consensus 47 ~~saMRhfa~~L~~~G~~V~Y~~~~ 71 (224)
T PF04244_consen 47 FFSAMRHFADELRAKGFRVHYIELD 71 (224)
T ss_dssp HHHHHHHHHHHHHHTT--EEEE-TT
T ss_pred HHHHHHHHHHHHHhCCCEEEEEeCC
Confidence 5667889999999999999999874
No 426
>PF05225 HTH_psq: helix-turn-helix, Psq domain; InterPro: IPR007889 This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster []. In pipsqueak this domain binds to GAGA sequence []. The pipsqueak family, which includes proteins from fungi, sea urchins, nematodes, insects, and vertebrates appear to be proteins essential for sequence-specific targeting of a polycomb group protein complex [].; GO: 0003677 DNA binding; PDB: 2COB_A.
Probab=34.99 E-value=50 Score=20.73 Aligned_cols=26 Identities=19% Similarity=0.277 Sum_probs=18.4
Q ss_pred chHHHHHHHHHHhcccchHHHHHHHHHH
Q 046167 369 ERGAVEKAVRKLTVDKEGEFLRQRAAQL 396 (424)
Q Consensus 369 ~~~~L~~ai~~ll~~~~~~~~~~~a~~l 396 (424)
++++|.+||..+.++. -++++.|+++
T Consensus 1 tee~l~~Ai~~v~~g~--~S~r~AA~~y 26 (45)
T PF05225_consen 1 TEEDLQKAIEAVKNGK--MSIRKAAKKY 26 (45)
T ss_dssp -HHHHHHHHHHHHTTS--S-HHHHHHHH
T ss_pred CHHHHHHHHHHHHhCC--CCHHHHHHHH
Confidence 4688999999999764 4667666654
No 427
>cd07062 Peptidase_S66_mccF_like Microcin C7 self-immunity protein determines resistance to exogenous microcin C7. Microcin C7 self-immunity protein (mccF): MccF, a homolog of the LD-carboxypeptidase family, mediates resistance against exogenously added microcin C7 (MccC7), a ribosomally-encoded peptide antibiotic that contains a phosphoramidate linkage to adenosine monophosphate at its C-terminus. The plasmid-encoded mccF gene is transcribed in the opposite direction to the other five genes (mccA-E) and is required for the full expression of immunity but not for production. The catalytic triad residues (Ser, His, Glu) of LD-carboxypeptidase are also conserved in MccF, strongly suggesting that MccF shares the hydrolytic activity with LD-carboxypeptidases. Substrates of MccF have not been deduced, but could likely be microcin C7 precursors. The possible role of MccF is to defend producer cells against exogenous microcin from re-entering after having been exported. It is suggested that M
Probab=34.94 E-value=67 Score=30.00 Aligned_cols=73 Identities=8% Similarity=0.063 Sum_probs=46.3
Q ss_pred CCHHHHHHHHHHHHhCCCCeEEEEcCCCCCCCcccccCchhHHHHhcCCCceeeecchhhhhccccccccccccchhhHH
Q 046167 250 MDKKELEEMAWGLVNSKQPFLWVIRPRTNNAPEGIELLPKVLAEDVQENGYIVKWAPQKEVLSHVAVGGFWSHCGWNSTL 329 (424)
Q Consensus 250 ~~~~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~nv~v~~~ip~~~ll~~~~~~~~i~hgG~~t~~ 329 (424)
.+.+..+.+.+++.+...+.||.++++.... ++.++++...+-++|.+ ||=.+-.++++
T Consensus 50 ~~~~Ra~dL~~a~~Dp~i~aI~~~rGG~g~~-------------------rlL~~lD~~~i~~~PK~--fiGySDiTaL~ 108 (308)
T cd07062 50 SPEERAEELMAAFADPSIKAIIPTIGGDDSN-------------------ELLPYLDYELIKKNPKI--FIGYSDITALH 108 (308)
T ss_pred CHHHHHHHHHHHhcCCCCCEEEECCcccCHh-------------------hhhhhcCHHHHhhCCCE--EEeccHHHHHH
Confidence 3567788899999988899999998764221 34455555555555655 66666666666
Q ss_pred Hhhh--cCCceeecCc
Q 046167 330 ESIC--EGVPMICMPF 343 (424)
Q Consensus 330 eal~--~GvP~v~~P~ 343 (424)
-+++ +|.+.+-=|.
T Consensus 109 ~al~~~~g~~t~hGp~ 124 (308)
T cd07062 109 LAIYKKTGLVTYYGPN 124 (308)
T ss_pred HHHHHhcCCeEEECcc
Confidence 5553 2555544443
No 428
>PF10083 DUF2321: Uncharacterized protein conserved in bacteria (DUF2321); InterPro: IPR016891 This entry is represented by Bacteriophage 'Lactobacillus prophage Lj928', Orf-Ljo1454. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=34.75 E-value=96 Score=25.46 Aligned_cols=72 Identities=18% Similarity=0.222 Sum_probs=46.8
Q ss_pred cCcccchhhHHHHHHhhhhcceecCcccchHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHH
Q 046167 341 MPFFEDQKVNARYLSHVWGVGLELEHELERGAVEKAVRKLTVDKEGEFLRQRAAQLKEEVELSTRKGGFSYNSLNELLDL 420 (424)
Q Consensus 341 ~P~~~DQ~~na~~~~~~~G~g~~~~~~~~~~~L~~ai~~ll~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~a~~~~~~~ 420 (424)
.|+...+-.+|+-+.+. --+ +. ....+.+.+.+..|+.|- +.-+-.+.+++..+.+. |.+...++.+++=+
T Consensus 78 yPWt~~~L~aa~el~ee-~ee--Ls-~deke~~~~sl~dL~~d~--PkT~vA~~rfKk~~~K~---g~~v~~~~~dIlVd 148 (158)
T PF10083_consen 78 YPWTENALEAANELIEE-DEE--LS-PDEKEQFKESLPDLTKDT--PKTKVAATRFKKILSKA---GSIVGDAIRDILVD 148 (158)
T ss_pred CchHHHHHHHHHHHHHH-hhc--CC-HHHHHHHHhhhHHHhhcC--CccHHHHHHHHHHHHHH---hHHHHHHHHHHHHH
Confidence 46666667777666653 111 12 245688999999999874 67778888888887776 33445566665544
Q ss_pred H
Q 046167 421 I 421 (424)
Q Consensus 421 ~ 421 (424)
+
T Consensus 149 v 149 (158)
T PF10083_consen 149 V 149 (158)
T ss_pred H
Confidence 3
No 429
>PRK05647 purN phosphoribosylglycinamide formyltransferase; Reviewed
Probab=34.68 E-value=2.5e+02 Score=24.30 Aligned_cols=52 Identities=10% Similarity=0.098 Sum_probs=29.4
Q ss_pred ceEEEEcCCCccChHHHHHHHHHHHhCC--CeEEEEeCCC-CCCC--CCCCCCceEEeCC
Q 046167 9 RRVVLVPSPHQGHINPMLQLGTILHSKG--FSITVVHTQF-NSPN--PSNHPEFEFQSIP 63 (424)
Q Consensus 9 ~ril~~~~~~~GH~~p~~~la~~L~~~G--h~V~~~~~~~-~~~~--~~~~~g~~~~~~~ 63 (424)
+||++++.+..+- +.++.+++.+.+ ++|.++.+.. .... .....|+.+..++
T Consensus 2 ~ki~vl~sg~gs~---~~~ll~~~~~~~~~~~I~~vvs~~~~~~~~~~a~~~gIp~~~~~ 58 (200)
T PRK05647 2 KRIVVLASGNGSN---LQAIIDACAAGQLPAEIVAVISDRPDAYGLERAEAAGIPTFVLD 58 (200)
T ss_pred ceEEEEEcCCChh---HHHHHHHHHcCCCCcEEEEEEecCccchHHHHHHHcCCCEEEEC
Confidence 4888888765433 346667777764 7888765542 2111 2222466666544
No 430
>PRK13235 nifH nitrogenase reductase; Reviewed
Probab=34.65 E-value=65 Score=29.37 Aligned_cols=37 Identities=16% Similarity=0.069 Sum_probs=31.7
Q ss_pred eEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCCC
Q 046167 10 RVVLVPSPHQGHINPMLQLGTILHSKGFSITVVHTQF 46 (424)
Q Consensus 10 ril~~~~~~~GH~~p~~~la~~L~~~Gh~V~~~~~~~ 46 (424)
.|.|+.-||-|-..-.+.||.+|+++|++|.++=.++
T Consensus 3 ~iav~~KGGVGKTT~~~nLA~~La~~G~rVLlID~Dp 39 (274)
T PRK13235 3 KVAIYGKGGIGKSTTTQNTVAGLAEMGKKVMVVGCDP 39 (274)
T ss_pred EEEEeCCCCccHHHHHHHHHHHHHHCCCcEEEEecCC
Confidence 5666667788999999999999999999999996543
No 431
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=34.59 E-value=2.5e+02 Score=27.45 Aligned_cols=34 Identities=21% Similarity=0.378 Sum_probs=29.8
Q ss_pred EEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCC
Q 046167 11 VVLVPSPHQGHINPMLQLGTILHSKGFSITVVHTQ 45 (424)
Q Consensus 11 il~~~~~~~GH~~p~~~la~~L~~~Gh~V~~~~~~ 45 (424)
||+---||.|--.=++.++..|+++| .|.+++++
T Consensus 96 iLIgGdPGIGKSTLLLQva~~lA~~~-~vLYVsGE 129 (456)
T COG1066 96 ILIGGDPGIGKSTLLLQVAARLAKRG-KVLYVSGE 129 (456)
T ss_pred EEEccCCCCCHHHHHHHHHHHHHhcC-cEEEEeCC
Confidence 55566779999999999999999999 99999985
No 432
>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=34.51 E-value=1.1e+02 Score=25.27 Aligned_cols=48 Identities=17% Similarity=0.170 Sum_probs=32.2
Q ss_pred HHHHHHHHhhc-CCCCCceEEEecCcc----------chHHHHHHHhCCceEEEecchHHH
Q 046167 92 RNWLVQMIKEQ-QPGDEIVCIIYDEVM----------YFAEASASQLNVQSIILRTSGAVT 141 (424)
Q Consensus 92 ~~~~~~~~~~~-~~~~~pDlvi~d~~~----------~~~~~~A~~lgiP~v~~~~~~~~~ 141 (424)
++.+..+.... -+ .||+|++..-. --+..+|+++|+|+.-++....+.
T Consensus 110 rnWlSQL~~hAYcE--~PDivlcGNK~DL~~~R~Vs~~qa~~La~kyglPYfETSA~tg~N 168 (219)
T KOG0081|consen 110 RNWLSQLQTHAYCE--NPDIVLCGNKADLEDQRVVSEDQAAALADKYGLPYFETSACTGTN 168 (219)
T ss_pred HHHHHHHHHhhccC--CCCEEEEcCccchhhhhhhhHHHHHHHHHHhCCCeeeeccccCcC
Confidence 44555554422 23 79999997533 335679999999999887765443
No 433
>PRK00652 lpxK tetraacyldisaccharide 4'-kinase; Reviewed
Probab=34.48 E-value=77 Score=29.86 Aligned_cols=39 Identities=18% Similarity=0.355 Sum_probs=32.2
Q ss_pred eEEE--EcCCCccChHHHHHHHHHHHhCCCeEEEEeCCCCC
Q 046167 10 RVVL--VPSPHQGHINPMLQLGTILHSKGFSITVVHTQFNS 48 (424)
Q Consensus 10 ril~--~~~~~~GH~~p~~~la~~L~~~Gh~V~~~~~~~~~ 48 (424)
-|.+ ++.||+|-.-=.+.|++.|+++|++|.+++..+..
T Consensus 51 vIsVGNi~vGGtGKTP~v~~L~~~l~~~g~~~~ilsRGYg~ 91 (325)
T PRK00652 51 VIVVGNITVGGTGKTPVVIALAEQLQARGLKPGVVSRGYGG 91 (325)
T ss_pred EEEEcCeeCCCCChHHHHHHHHHHHHHCCCeEEEECCCCCC
Confidence 4455 67889999777888999999999999999986543
No 434
>PF03358 FMN_red: NADPH-dependent FMN reductase; InterPro: IPR005025 NADPH-dependent FMN reductase (1.5.1.29 from EC) reduces FMN and also reduces riboflavin and FAD, although more slowly. Members of this entry catalyse the reaction NAD(P)H + FMN = NAD(P)(+) + FMNH(2).; PDB: 3SVL_B 3GFS_F 3GFQ_A 1NNI_1 2GSW_B 3GFR_D 1T0I_B 3D7N_A 2R97_A 3B6K_A ....
Probab=34.46 E-value=69 Score=25.96 Aligned_cols=36 Identities=8% Similarity=0.314 Sum_probs=25.8
Q ss_pred ceEEEEcCCCc--cChHHHHH-HHHHHHhCCCeEEEEeC
Q 046167 9 RRVVLVPSPHQ--GHINPMLQ-LGTILHSKGFSITVVHT 44 (424)
Q Consensus 9 ~ril~~~~~~~--GH~~p~~~-la~~L~~~Gh~V~~~~~ 44 (424)
|||+++..... |+..-+.. +++.|.++|++|.++--
T Consensus 1 Mkilii~gS~r~~~~t~~l~~~~~~~l~~~g~e~~~i~l 39 (152)
T PF03358_consen 1 MKILIINGSPRKNSNTRKLAEAVAEQLEEAGAEVEVIDL 39 (152)
T ss_dssp -EEEEEESSSSTTSHHHHHHHHHHHHHHHTTEEEEEEEC
T ss_pred CEEEEEECcCCCCCHHHHHHHHHHHHHHHcCCEEEEEec
Confidence 57877776543 88777665 56677777999999854
No 435
>cd00861 ProRS_anticodon_short ProRS Prolyl-anticodon binding domain, short version found predominantly in bacteria. ProRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=34.26 E-value=77 Score=23.08 Aligned_cols=36 Identities=17% Similarity=0.180 Sum_probs=27.8
Q ss_pred ceEEEEcCCCc--cChHHHHHHHHHHHhCCCeEEEEeC
Q 046167 9 RRVVLVPSPHQ--GHINPMLQLGTILHSKGFSITVVHT 44 (424)
Q Consensus 9 ~ril~~~~~~~--GH~~p~~~la~~L~~~Gh~V~~~~~ 44 (424)
.+++++|.... .+..-...++..|...|..|.+-..
T Consensus 2 ~qv~i~p~~~~~~~~~~~a~~la~~Lr~~g~~v~~d~~ 39 (94)
T cd00861 2 FDVVIIPMNMKDEVQQELAEKLYAELQAAGVDVLLDDR 39 (94)
T ss_pred eEEEEEEcCCCcHHHHHHHHHHHHHHHHCCCEEEEECC
Confidence 47888887643 4555678899999999999988654
No 436
>PF01012 ETF: Electron transfer flavoprotein domain; InterPro: IPR014730 Electron transfer flavoproteins (ETFs) serve as specific electron acceptors for primary dehydrogenases, transferring the electrons to terminal respiratory systems. They can be functionally classified into constitutive, "housekeeping" ETFs, mainly involved in the oxidation of fatty acids (Group I), and ETFs produced by some prokaryotes under specific growth conditions, receiving electrons only from the oxidation of specific substrates (Group II) []. ETFs are heterodimeric proteins composed of an alpha and beta subunit, and contain an FAD cofactor and AMP [, , , , ]. ETF consists of three domains: domains I and II are formed by the N- and C-terminal portions of the alpha subunit, respectively, while domain III is formed by the beta subunit. Domains I and III share an almost identical alpha-beta-alpha sandwich fold, while domain II forms an alpha-beta-alpha sandwich similar to that of bacterial flavodoxins. FAD is bound in a cleft between domains II and III, while domain III binds the AMP molecule. Interactions between domains I and III stabilise the protein, forming a shallow bowl where domain II resides. This entry represents the N-terminal domain of both the alpha and beta subunits from Group I and Group II ETFs.; PDB: 1EFP_B 3FET_B 3IH5_B 2A1T_S 1EFV_B 1T9G_S 2A1U_B 1O96_E 1O94_C 3CLU_C ....
Probab=34.06 E-value=78 Score=26.17 Aligned_cols=105 Identities=13% Similarity=0.166 Sum_probs=54.5
Q ss_pred EEEEcCCCccChHH----HHHHHHHHHhC-CCeEEEEeCCCCCCC-C-C-----CCCCc-eEEeCCCCCCCCccccccHH
Q 046167 11 VVLVPSPHQGHINP----MLQLGTILHSK-GFSITVVHTQFNSPN-P-S-----NHPEF-EFQSIPDGLMDVNISARNLV 77 (424)
Q Consensus 11 il~~~~~~~GH~~p----~~~la~~L~~~-Gh~V~~~~~~~~~~~-~-~-----~~~g~-~~~~~~~~~~~~~~~~~~~~ 77 (424)
|+++.--..|.++| .+..|++|++. |.+|+.++-. ..+. . . ...|. +.+.++... ....+..
T Consensus 2 ilv~~e~~~~~l~~~~~e~l~~A~~La~~~g~~v~av~~G-~~~~~~~~l~~~l~~~G~d~v~~~~~~~----~~~~~~~ 76 (164)
T PF01012_consen 2 ILVFAEHRDGRLNPVSLEALEAARRLAEALGGEVTAVVLG-PAEEAAEALRKALAKYGADKVYHIDDPA----LAEYDPE 76 (164)
T ss_dssp EEEEE-EETCEE-HHHHHHHHHHHHHHHCTTSEEEEEEEE-TCCCHHHHHHHHHHSTTESEEEEEE-GG----GTTC-HH
T ss_pred EEEEEECCCCccCHHHHHHHHHHHHHHhhcCCeEEEEEEe-cchhhHHHHhhhhhhcCCcEEEEecCcc----ccccCHH
Confidence 33443333555555 67789999985 8898888875 3121 1 1 11343 333333110 0001111
Q ss_pred HHHHHHHHhchhHHHHHHHHHHhhcCCCCCceEEEecCcc---chHHHHHHHhCCceEEEec
Q 046167 78 DSILLLNENCREPFRNWLVQMIKEQQPGDEIVCIIYDEVM---YFAEASASQLNVQSIILRT 136 (424)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pDlvi~d~~~---~~~~~~A~~lgiP~v~~~~ 136 (424)
. ....+.++++.. +||+|+...-. -.+..+|.++|.|++.-..
T Consensus 77 ~--------~a~~l~~~~~~~--------~~~lVl~~~t~~g~~la~~lA~~L~~~~v~~v~ 122 (164)
T PF01012_consen 77 A--------YADALAELIKEE--------GPDLVLFGSTSFGRDLAPRLAARLGAPLVTDVT 122 (164)
T ss_dssp H--------HHHHHHHHHHHH--------T-SEEEEESSHHHHHHHHHHHHHHT-EEEEEEE
T ss_pred H--------HHHHHHHHHHhc--------CCCEEEEcCcCCCCcHHHHHHHHhCCCccceEE
Confidence 1 112223344444 89999997644 5666899999999997533
No 437
>PRK06079 enoyl-(acyl carrier protein) reductase; Provisional
Probab=34.05 E-value=79 Score=28.22 Aligned_cols=33 Identities=9% Similarity=0.147 Sum_probs=23.7
Q ss_pred eEEEEcCCCc-cChHHHHHHHHHHHhCCCeEEEEeC
Q 046167 10 RVVLVPSPHQ-GHINPMLQLGTILHSKGFSITVVHT 44 (424)
Q Consensus 10 ril~~~~~~~-GH~~p~~~la~~L~~~Gh~V~~~~~ 44 (424)
|+++++.++. +-+ -.++|++|.++|++|.+...
T Consensus 8 k~~lItGas~~~gI--G~a~a~~la~~G~~Vi~~~r 41 (252)
T PRK06079 8 KKIVVMGVANKRSI--AWGCAQAIKDQGATVIYTYQ 41 (252)
T ss_pred CEEEEeCCCCCCch--HHHHHHHHHHCCCEEEEecC
Confidence 6667776652 222 26899999999999988754
No 438
>PRK07774 short chain dehydrogenase; Provisional
Probab=34.04 E-value=67 Score=28.42 Aligned_cols=39 Identities=18% Similarity=0.247 Sum_probs=25.6
Q ss_pred CcccCCCCceEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCC
Q 046167 1 MEEQGQRRRRVVLVPSPHQGHINPMLQLGTILHSKGFSITVVHTQ 45 (424)
Q Consensus 1 ~~~m~~~~~ril~~~~~~~GH~~p~~~la~~L~~~Gh~V~~~~~~ 45 (424)
|+.|+.+ +++++ + +.|.+ -.++++.|.++|++|.++...
T Consensus 1 ~~~~~~k--~vlIt-G-asg~i--G~~la~~l~~~g~~vi~~~r~ 39 (250)
T PRK07774 1 MGRFDDK--VAIVT-G-AAGGI--GQAYAEALAREGASVVVADIN 39 (250)
T ss_pred CcccCCC--EEEEE-C-CCchH--HHHHHHHHHHCCCEEEEEeCC
Confidence 5666543 55444 3 33332 457899999999999888653
No 439
>PRK06114 short chain dehydrogenase; Provisional
Probab=34.00 E-value=84 Score=27.98 Aligned_cols=32 Identities=16% Similarity=0.222 Sum_probs=23.9
Q ss_pred eEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeC
Q 046167 10 RVVLVPSPHQGHINPMLQLGTILHSKGFSITVVHT 44 (424)
Q Consensus 10 ril~~~~~~~GH~~p~~~la~~L~~~Gh~V~~~~~ 44 (424)
|.++++.++.| =-.++|+.|.++|++|.++..
T Consensus 9 k~~lVtG~s~g---IG~~ia~~l~~~G~~v~~~~r 40 (254)
T PRK06114 9 QVAFVTGAGSG---IGQRIAIGLAQAGADVALFDL 40 (254)
T ss_pred CEEEEECCCch---HHHHHHHHHHHCCCEEEEEeC
Confidence 56666665543 346789999999999998865
No 440
>PRK13869 plasmid-partitioning protein RepA; Provisional
Probab=33.99 E-value=65 Score=31.43 Aligned_cols=38 Identities=18% Similarity=0.270 Sum_probs=30.2
Q ss_pred ceEEEEc--CCCccChHHHHHHHHHHHhCCCeEEEEeCCC
Q 046167 9 RRVVLVP--SPHQGHINPMLQLGTILHSKGFSITVVHTQF 46 (424)
Q Consensus 9 ~ril~~~--~~~~GH~~p~~~la~~L~~~Gh~V~~~~~~~ 46 (424)
++|+.+. -||.|-..-.+.||..|+.+|++|.++=.++
T Consensus 121 ~~vIav~n~KGGvGKTTta~nLA~~LA~~G~rVLlIDlDp 160 (405)
T PRK13869 121 LQVIAVTNFKGGSGKTTTSAHLAQYLALQGYRVLAVDLDP 160 (405)
T ss_pred ceEEEEEcCCCCCCHHHHHHHHHHHHHhcCCceEEEcCCC
Confidence 4554444 4677999999999999999999999985543
No 441
>TIGR01380 glut_syn glutathione synthetase, prokaryotic. This model was built using glutathione synthetases found in Gram-negative bacteria. This gene does not appear to be present in genomes of Gram-positive bacteria. Glutathione synthetase has an ATP-binding domain in the COOH terminus and catalyzes the second step in the glutathione biosynthesis pathway: ATP + gamma-L-glutamyl-L-cysteine + glycine = ADP + phosphate + glutathione. Glutathione is a tripeptide that functions as a reductant in many cellular reactions.
Probab=33.89 E-value=69 Score=29.97 Aligned_cols=37 Identities=11% Similarity=0.097 Sum_probs=28.2
Q ss_pred ceEEEEcCC---CccChHHHHHHHHHHHhCCCeEEEEeCC
Q 046167 9 RRVVLVPSP---HQGHINPMLQLGTILHSKGFSITVVHTQ 45 (424)
Q Consensus 9 ~ril~~~~~---~~GH~~p~~~la~~L~~~Gh~V~~~~~~ 45 (424)
|||+|+.-| -.-+.+...+|..+.++|||+|.++...
T Consensus 1 m~~~~~~~~~~~~~~~~~st~~L~~aa~~rG~~v~~~~~~ 40 (312)
T TIGR01380 1 LKVAFQMDPIESINIGKDTTFALMEEAQKRGHELFFYEPG 40 (312)
T ss_pred CeEEEEeCCHHHCCCCcChHHHHHHHHHHcCCEEEEEehh
Confidence 467676643 1244467889999999999999999884
No 442
>PRK06321 replicative DNA helicase; Provisional
Probab=33.89 E-value=2.1e+02 Score=28.63 Aligned_cols=35 Identities=11% Similarity=0.274 Sum_probs=28.8
Q ss_pred EEEEcCCCccChHHHHHHHHHHHh-CCCeEEEEeCC
Q 046167 11 VVLVPSPHQGHINPMLQLGTILHS-KGFSITVVHTQ 45 (424)
Q Consensus 11 il~~~~~~~GH~~p~~~la~~L~~-~Gh~V~~~~~~ 45 (424)
+++...|+.|-..=.+.+|...+. .|..|.|++-+
T Consensus 229 iiiaarPgmGKTafal~ia~~~a~~~g~~v~~fSLE 264 (472)
T PRK06321 229 MILAARPAMGKTALALNIAENFCFQNRLPVGIFSLE 264 (472)
T ss_pred EEEEeCCCCChHHHHHHHHHHHHHhcCCeEEEEecc
Confidence 466678899999989999998874 59999999875
No 443
>cd01147 HemV-2 Metal binding protein HemV-2. These proteins are predicted to function as initial receptors in ABC transport of metal ions. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=33.82 E-value=61 Score=29.04 Aligned_cols=31 Identities=6% Similarity=-0.061 Sum_probs=20.7
Q ss_pred CceEEEecCccch--HH-HHHHHhCCceEEEecc
Q 046167 107 EIVCIIYDEVMYF--AE-ASASQLNVQSIILRTS 137 (424)
Q Consensus 107 ~pDlvi~d~~~~~--~~-~~A~~lgiP~v~~~~~ 137 (424)
+|||||....... .. .+.+.+|+|++.+...
T Consensus 74 ~PDLIi~~~~~~~~~~~~~l~~~~gipvv~~~~~ 107 (262)
T cd01147 74 KPDVVIDVGSDDPTSIADDLQKKTGIPVVVLDGG 107 (262)
T ss_pred CCCEEEEecCCccchhHHHHHHhhCCCEEEEecC
Confidence 8999998754332 22 2444589999887654
No 444
>PRK08462 biotin carboxylase; Validated
Probab=33.82 E-value=2.2e+02 Score=28.11 Aligned_cols=33 Identities=9% Similarity=0.147 Sum_probs=24.5
Q ss_pred ceEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCCC
Q 046167 9 RRVVLVPSPHQGHINPMLQLGTILHSKGFSITVVHTQF 46 (424)
Q Consensus 9 ~ril~~~~~~~GH~~p~~~la~~L~~~Gh~V~~~~~~~ 46 (424)
+|||++..+.. .+.+.+++++.|++|..+.+..
T Consensus 5 k~ili~~~g~~-----~~~~~~~~~~~G~~~v~~~~~~ 37 (445)
T PRK08462 5 KRILIANRGEI-----ALRAIRTIQEMGKEAIAIYSTA 37 (445)
T ss_pred CEEEEECCcHH-----HHHHHHHHHHcCCCEEEEechh
Confidence 37777755432 6788999999999988887653
No 445
>COG2086 FixA Electron transfer flavoprotein, beta subunit [Energy production and conversion]
Probab=33.81 E-value=69 Score=29.07 Aligned_cols=30 Identities=7% Similarity=-0.082 Sum_probs=23.9
Q ss_pred CceEEEecCc------cchHHHHHHHhCCceEEEec
Q 046167 107 EIVCIIYDEV------MYFAEASASQLNVQSIILRT 136 (424)
Q Consensus 107 ~pDlvi~d~~------~~~~~~~A~~lgiP~v~~~~ 136 (424)
++||||+.-. ...+..+|+.||.|+++...
T Consensus 111 ~~~LVl~G~qa~D~~t~qvg~~lAe~Lg~P~~t~v~ 146 (260)
T COG2086 111 GPDLVLTGKQAIDGDTGQVGPLLAELLGWPQVTYVS 146 (260)
T ss_pred CCCEEEEecccccCCccchHHHHHHHhCCceeeeEE
Confidence 8999998432 26778999999999998643
No 446
>PRK12825 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=33.66 E-value=90 Score=27.32 Aligned_cols=39 Identities=13% Similarity=0.047 Sum_probs=25.4
Q ss_pred CcccCCCCceEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCC
Q 046167 1 MEEQGQRRRRVVLVPSPHQGHINPMLQLGTILHSKGFSITVVHTQ 45 (424)
Q Consensus 1 ~~~m~~~~~ril~~~~~~~GH~~p~~~la~~L~~~Gh~V~~~~~~ 45 (424)
|..|.. ++++++. +.|++ -..|++.|.++||+|++++..
T Consensus 1 ~~~~~~--~~vlItG--asg~i--G~~l~~~l~~~g~~v~~~~~~ 39 (249)
T PRK12825 1 MGSLMG--RVALVTG--AARGL--GRAIALRLARAGADVVVHYRS 39 (249)
T ss_pred CCCCCC--CEEEEeC--CCchH--HHHHHHHHHHCCCeEEEEeCC
Confidence 555543 3666543 34443 357889999999999776653
No 447
>PRK03372 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=33.60 E-value=63 Score=30.15 Aligned_cols=52 Identities=19% Similarity=0.181 Sum_probs=36.8
Q ss_pred ccccccccchhhHHHhhhc----CCceeecCcccchhhHHHHHHhhhhcceecCcccchHHHHHHHHHHhcc
Q 046167 316 VGGFWSHCGWNSTLESICE----GVPMICMPFFEDQKVNARYLSHVWGVGLELEHELERGAVEKAVRKLTVD 383 (424)
Q Consensus 316 ~~~~i~hgG~~t~~eal~~----GvP~v~~P~~~DQ~~na~~~~~~~G~g~~~~~~~~~~~L~~ai~~ll~~ 383 (424)
++++|+-||-||++.|... ++|++.+.. + .+|-.. +.+++++.+++++++++
T Consensus 73 ~D~vi~lGGDGT~L~aar~~~~~~~PilGIN~-------------G-~lGFL~--~~~~~~~~~~l~~i~~g 128 (306)
T PRK03372 73 CELVLVLGGDGTILRAAELARAADVPVLGVNL-------------G-HVGFLA--EAEAEDLDEAVERVVDR 128 (306)
T ss_pred CCEEEEEcCCHHHHHHHHHhccCCCcEEEEec-------------C-CCceec--cCCHHHHHHHHHHHHcC
Confidence 3449999999999988764 788887743 2 222211 25678888888888876
No 448
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=33.58 E-value=97 Score=27.27 Aligned_cols=39 Identities=15% Similarity=0.152 Sum_probs=25.4
Q ss_pred CcccCCCCceEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCC
Q 046167 1 MEEQGQRRRRVVLVPSPHQGHINPMLQLGTILHSKGFSITVVHTQ 45 (424)
Q Consensus 1 ~~~m~~~~~ril~~~~~~~GH~~p~~~la~~L~~~Gh~V~~~~~~ 45 (424)
|..|.. +++++ +. +.|.+ -..+++.|.++|++|+++...
T Consensus 1 ~~~~~~--~~ilI-tG-asg~i--G~~l~~~l~~~g~~V~~~~r~ 39 (251)
T PRK12826 1 TRDLEG--RVALV-TG-AARGI--GRAIAVRLAADGAEVIVVDIC 39 (251)
T ss_pred CCCCCC--CEEEE-cC-CCCcH--HHHHHHHHHHCCCEEEEEeCC
Confidence 344443 35554 33 34444 467899999999999888764
No 449
>cd06533 Glyco_transf_WecG_TagA The glycosyltransferase WecG/TagA superfamily contains Escherichia coli WecG, Bacillus subtilis TagA and related proteins. E. coli WecG is believed to be a UDP-N-acetyl-D-mannosaminuronic acid transferase, and is involved in enterobacterial common antigen (eca) synthesis. B. subtilis TagA plays a key role in the Wall Teichoic Acid (WTA) biosynthetic pathway, catalyzing the transfer of N-acetylmannosamine to the C4 hydroxyl of a membrane-anchored N-acetylglucosaminyl diphospholipid to make ManNAc-beta-(1,4)-GlcNAc-pp-undecaprenyl. This is the first committed step in this pathway. Also included in this group is Xanthomonas campestris pv. campestris GumM, a glycosyltransferase participating in the biosynthesis of the exopolysaccharide xanthan.
Probab=33.56 E-value=1.4e+02 Score=24.94 Aligned_cols=87 Identities=10% Similarity=0.087 Sum_probs=0.0
Q ss_pred HHHHHHHHHhCCCeEEEEeCCCCCCC------CCCCCCceEEeCCCCCCCCccccccHHHHHHHHHHhchhHHHHHHHHH
Q 046167 25 MLQLGTILHSKGFSITVVHTQFNSPN------PSNHPEFEFQSIPDGLMDVNISARNLVDSILLLNENCREPFRNWLVQM 98 (424)
Q Consensus 25 ~~~la~~L~~~Gh~V~~~~~~~~~~~------~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (424)
+..|.+...++|.+|.++++...... ...++|++++-.-++.-....... +++.+
T Consensus 35 ~~~ll~~~~~~~~~v~llG~~~~~~~~~~~~l~~~yp~l~i~g~~~g~~~~~~~~~-------------------i~~~I 95 (171)
T cd06533 35 MPALLELAAQKGLRVFLLGAKPEVLEKAAERLRARYPGLKIVGYHHGYFGPEEEEE-------------------IIERI 95 (171)
T ss_pred HHHHHHHHHHcCCeEEEECCCHHHHHHHHHHHHHHCCCcEEEEecCCCCChhhHHH-------------------HHHHH
Q ss_pred HhhcCCCCCceEEEecCcc----chHHHHHHHhCCceEEEe
Q 046167 99 IKEQQPGDEIVCIIYDEVM----YFAEASASQLNVQSIILR 135 (424)
Q Consensus 99 ~~~~~~~~~pDlvi~d~~~----~~~~~~A~~lgiP~v~~~ 135 (424)
.+. +||+|+..... .++......++.+++...
T Consensus 96 ~~~-----~pdiv~vglG~PkQE~~~~~~~~~l~~~v~~~v 131 (171)
T cd06533 96 NAS-----GADILFVGLGAPKQELWIARHKDRLPVPVAIGV 131 (171)
T ss_pred HHc-----CCCEEEEECCCCHHHHHHHHHHHHCCCCEEEEe
No 450
>TIGR01278 DPOR_BchB light-independent protochlorophyllide reductase, B subunit. This enzyme describes the B subunit of the dark form protochlorophyllide reductase, a nitrogenase-like enzyme. This subunit shows homology to the nitrogenase molybdenum-iron protein. It catalyzes a step in bacteriochlorophyll biosynthesis.
Probab=33.50 E-value=58 Score=32.92 Aligned_cols=27 Identities=15% Similarity=0.244 Sum_probs=22.5
Q ss_pred CceEEEecCccchHHHHHHHhCCceEEEec
Q 046167 107 EIVCIIYDEVMYFAEASASQLNVQSIILRT 136 (424)
Q Consensus 107 ~pDlvi~d~~~~~~~~~A~~lgiP~v~~~~ 136 (424)
+||+||.+. ....+|+++|||++.++.
T Consensus 364 ~pdliiG~~---~er~~a~~lgip~~~i~~ 390 (511)
T TIGR01278 364 EPELVLGTQ---MERHSAKRLDIPCGVISA 390 (511)
T ss_pred CCCEEEECh---HHHHHHHHcCCCEEEecC
Confidence 799999986 556789999999997754
No 451
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=33.47 E-value=41 Score=31.74 Aligned_cols=32 Identities=22% Similarity=0.363 Sum_probs=26.3
Q ss_pred ceEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCC
Q 046167 9 RRVVLVPSPHQGHINPMLQLGTILHSKGFSITVVHTQ 45 (424)
Q Consensus 9 ~ril~~~~~~~GH~~p~~~la~~L~~~Gh~V~~~~~~ 45 (424)
|||.|+..|..|. .+|..|.++||+|+++...
T Consensus 3 mkI~IiG~G~mG~-----~~A~~L~~~G~~V~~~~r~ 34 (341)
T PRK08229 3 ARICVLGAGSIGC-----YLGGRLAAAGADVTLIGRA 34 (341)
T ss_pred ceEEEECCCHHHH-----HHHHHHHhcCCcEEEEecH
Confidence 4899987776664 6788999999999999863
No 452
>COG2120 Uncharacterized proteins, LmbE homologs [Function unknown]
Probab=33.47 E-value=75 Score=28.37 Aligned_cols=38 Identities=21% Similarity=0.104 Sum_probs=24.6
Q ss_pred CceEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCC
Q 046167 8 RRRVVLVPSPHQGHINPMLQLGTILHSKGFSITVVHTQ 45 (424)
Q Consensus 8 ~~ril~~~~~~~GH~~p~~~la~~L~~~Gh~V~~~~~~ 45 (424)
+++|+++...-.==..-+-.....|.++||+|++++--
T Consensus 10 ~~~vL~v~aHPDDe~~g~ggtla~~~~~G~~V~v~~lT 47 (237)
T COG2120 10 PLRVLVVFAHPDDEEIGCGGTLAKLAARGVEVTVVCLT 47 (237)
T ss_pred CCcEEEEecCCcchhhccHHHHHHHHHCCCeEEEEEcc
Confidence 36776665432222234455666778999999999974
No 453
>cd01976 Nitrogenase_MoFe_alpha Nitrogenase_MoFe_alpha_II: Nitrogenase MoFe protein, beta subunit. A group of proteins similar to the alpha subunit of the MoFe protein of the molybdenum (Mo-) nitrogenase. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Mo-nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=33.35 E-value=50 Score=32.45 Aligned_cols=27 Identities=4% Similarity=-0.135 Sum_probs=22.3
Q ss_pred CceEEEecCccchHHHHHHHhCCceEEEec
Q 046167 107 EIVCIIYDEVMYFAEASASQLNVQSIILRT 136 (424)
Q Consensus 107 ~pDlvi~d~~~~~~~~~A~~lgiP~v~~~~ 136 (424)
+||++|.... ...+|+++|||++.+..
T Consensus 369 ~pDliig~~~---~~~~a~k~giP~~~~~~ 395 (421)
T cd01976 369 KPDLIGSGIK---EKYVFQKMGIPFRQMHS 395 (421)
T ss_pred CCCEEEecCc---chhhhhhcCCCeEeCCc
Confidence 8999998863 56689999999987643
No 454
>PRK12311 rpsB 30S ribosomal protein S2/unknown domain fusion protein; Provisional
Probab=33.28 E-value=1.7e+02 Score=27.60 Aligned_cols=32 Identities=13% Similarity=0.037 Sum_probs=23.8
Q ss_pred CceEEEe-cCcc-chHHHHHHHhCCceEEEecch
Q 046167 107 EIVCIIY-DEVM-YFAEASASQLNVQSIILRTSG 138 (424)
Q Consensus 107 ~pDlvi~-d~~~-~~~~~~A~~lgiP~v~~~~~~ 138 (424)
.||+||. |... ..+..=|.++|||+|.+.-+.
T Consensus 152 ~Pd~viv~d~~~e~~AI~EA~kl~IPvIaivDTn 185 (326)
T PRK12311 152 LPDLLFVIDTNKEDIAIQEAQRLGIPVAAIVDTN 185 (326)
T ss_pred CCCEEEEeCCccchHHHHHHHHcCCCEEEEeeCC
Confidence 5997776 4433 677778999999999976553
No 455
>TIGR02931 anfK_nitrog Fe-only nitrogenase, beta subunit. Nitrogenase is the enzyme of biological nitrogen fixation. The most wide-spread and most efficient nitrogenase contains a molybdenum cofactor. This protein family, AnfK, represents the beta subunit of the iron-only alternative nitrogenase. It is homologous to NifK and VnfK, of the molybdenum-containing and the vanadium (V)-containing types, respectively.
Probab=33.26 E-value=5e+02 Score=25.86 Aligned_cols=26 Identities=12% Similarity=0.078 Sum_probs=22.0
Q ss_pred CceEEEecCccchHHHHHHHhCCceEEEe
Q 046167 107 EIVCIIYDEVMYFAEASASQLNVQSIILR 135 (424)
Q Consensus 107 ~pDlvi~d~~~~~~~~~A~~lgiP~v~~~ 135 (424)
+||++|... ....+|+++|||++.+.
T Consensus 388 ~~Dliig~s---~~~~~a~k~gip~~~~g 413 (461)
T TIGR02931 388 ELDLILGHS---KGRFISIDYNIPMVRVG 413 (461)
T ss_pred CCCEEEECc---chHHHHHHcCCCEEEec
Confidence 799999886 45789999999999763
No 456
>PRK10117 trehalose-6-phosphate synthase; Provisional
Probab=33.24 E-value=1.3e+02 Score=30.09 Aligned_cols=98 Identities=13% Similarity=0.093 Sum_probs=61.5
Q ss_pred hhcccccccccc--ccchhhH-HHhhhcCCc----eeecCcccchhhHHHHHHhhhhcceecCcccchHHHHHHHHHHhc
Q 046167 310 VLSHVAVGGFWS--HCGWNST-LESICEGVP----MICMPFFEDQKVNARYLSHVWGVGLELEHELERGAVEKAVRKLTV 382 (424)
Q Consensus 310 ll~~~~~~~~i~--hgG~~t~-~eal~~GvP----~v~~P~~~DQ~~na~~~~~~~G~g~~~~~~~~~~~L~~ai~~ll~ 382 (424)
+++.++| ++|| .-|+|.+ .|.+++-.| ++++ ...|-..+. |+-++.+.+ .+.++++++|.+.|+
T Consensus 348 lyr~ADv-~lVTplRDGMNLVAkEyva~q~~~~~GvLIL------SefAGaA~~-L~~AllVNP-~d~~~~A~Ai~~AL~ 418 (474)
T PRK10117 348 IFRYSDV-GLVTPLRDGMNLVAKEYVAAQDPANPGVLVL------SQFAGAANE-LTSALIVNP-YDRDEVAAALDRALT 418 (474)
T ss_pred HHHhccE-EEecccccccccccchheeeecCCCCccEEE------ecccchHHH-hCCCeEECC-CCHHHHHHHHHHHHc
Confidence 6667777 3333 2588866 588888653 2333 222333344 565777788 899999999999997
Q ss_pred ccchHHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHh
Q 046167 383 DKEGEFLRQRAAQLKEEVELSTRKGGFSYNSLNELLDLIN 422 (424)
Q Consensus 383 ~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~a~~~~~~~~~ 422 (424)
-+. ++=++|.+++.+.++. .++..=++.+++.+.
T Consensus 419 Mp~-~Er~~R~~~l~~~v~~-----~dv~~W~~~fL~~L~ 452 (474)
T PRK10117 419 MPL-AERISRHAEMLDVIVK-----NDINHWQECFISDLK 452 (474)
T ss_pred CCH-HHHHHHHHHHHHHhhh-----CCHHHHHHHHHHHHH
Confidence 643 3445666666666654 455555666665554
No 457
>PRK09219 xanthine phosphoribosyltransferase; Validated
Probab=33.22 E-value=85 Score=26.94 Aligned_cols=29 Identities=24% Similarity=0.134 Sum_probs=23.1
Q ss_pred CceEEEecC--ccchHHHHHHHhCCceEEEe
Q 046167 107 EIVCIIYDE--VMYFAEASASQLNVQSIILR 135 (424)
Q Consensus 107 ~pDlvi~d~--~~~~~~~~A~~lgiP~v~~~ 135 (424)
++|+|++-. ..+.+..+|..+|+|++.+.
T Consensus 50 ~~D~Ivg~e~~GiplA~~lA~~Lg~p~v~vR 80 (189)
T PRK09219 50 GITKILTIEASGIAPAVMAALALGVPVVFAK 80 (189)
T ss_pred CCCEEEEEccccHHHHHHHHHHHCCCEEEEE
Confidence 799998743 23777789999999999763
No 458
>PRK13195 pyrrolidone-carboxylate peptidase; Provisional
Probab=33.17 E-value=89 Score=27.60 Aligned_cols=26 Identities=19% Similarity=0.233 Sum_probs=19.6
Q ss_pred ceEEEEcCCCcc--ChHHHHHHHHHHHh
Q 046167 9 RRVVLVPSPHQG--HINPMLQLGTILHS 34 (424)
Q Consensus 9 ~ril~~~~~~~G--H~~p~~~la~~L~~ 34 (424)
||||+..|+-+| -+||...++++|..
T Consensus 2 ~~ILvTGF~PFgg~~~NPS~~~v~~L~~ 29 (222)
T PRK13195 2 SKVLVTGFGPYGVTPVNPAQLTAEELDG 29 (222)
T ss_pred CEEEEeeecCCCCCCcCchHHHHHhccc
Confidence 478887766443 48999999999964
No 459
>TIGR00696 wecB_tagA_cpsF bacterial polymer biosynthesis proteins, WecB/TagA/CpsF family. The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.
Probab=33.13 E-value=1.7e+02 Score=24.72 Aligned_cols=84 Identities=10% Similarity=-0.004 Sum_probs=0.0
Q ss_pred HHHHHHHHHhCCCeEEEEeCCCCCCC------CCCCCCceEEeCCCCCCCCccccccHHHHHHHHHHhchhHHHHHHHHH
Q 046167 25 MLQLGTILHSKGFSITVVHTQFNSPN------PSNHPEFEFQSIPDGLMDVNISARNLVDSILLLNENCREPFRNWLVQM 98 (424)
Q Consensus 25 ~~~la~~L~~~Gh~V~~~~~~~~~~~------~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (424)
+..|.+...++|+.|.++++...... ...++++++.-. .+. .....-.++++.+
T Consensus 37 ~~~l~~~~~~~~~~vfllG~~~~v~~~~~~~l~~~yP~l~i~g~-~g~-------------------f~~~~~~~i~~~I 96 (177)
T TIGR00696 37 MEELCQRAGKEKLPIFLYGGKPDVLQQLKVKLIKEYPKLKIVGA-FGP-------------------LEPEERKAALAKI 96 (177)
T ss_pred HHHHHHHHHHcCCeEEEECCCHHHHHHHHHHHHHHCCCCEEEEE-CCC-------------------CChHHHHHHHHHH
Q ss_pred HhhcCCCCCceEEEecCcc----chHHHHHHHhCCceEE
Q 046167 99 IKEQQPGDEIVCIIYDEVM----YFAEASASQLNVQSII 133 (424)
Q Consensus 99 ~~~~~~~~~pDlvi~d~~~----~~~~~~A~~lgiP~v~ 133 (424)
.++ +||+|+..... .+.......++.++++
T Consensus 97 ~~s-----~~dil~VglG~PkQE~~~~~~~~~~~~~v~~ 130 (177)
T TIGR00696 97 ARS-----GAGIVFVGLGCPKQEIWMRNHRHLKPDAVMI 130 (177)
T ss_pred HHc-----CCCEEEEEcCCcHhHHHHHHhHHhCCCcEEE
No 460
>COG0504 PyrG CTP synthase (UTP-ammonia lyase) [Nucleotide transport and metabolism]
Probab=33.12 E-value=81 Score=31.23 Aligned_cols=41 Identities=17% Similarity=0.284 Sum_probs=33.0
Q ss_pred ceEEEEcCC---CccChHHHHHHHHHHHhCCCeEEEEeCCCCCC
Q 046167 9 RRVVLVPSP---HQGHINPMLQLGTILHSKGFSITVVHTQFNSP 49 (424)
Q Consensus 9 ~ril~~~~~---~~GH~~p~~~la~~L~~~Gh~V~~~~~~~~~~ 49 (424)
+|.+|++.| +.|-=.-..+||+-|++||++||..--++...
T Consensus 1 ~KyIfVTGGVvSslGKGi~aaSlg~lLk~rG~~Vt~~KlDPYlN 44 (533)
T COG0504 1 TKYIFVTGGVVSSLGKGITAASLGRLLKARGLKVTIQKLDPYLN 44 (533)
T ss_pred CeEEEEeCCeecccccHHHHHHHHHHHHHCCceEEEEeccccee
Confidence 367888876 55777788899999999999999998765443
No 461
>PRK04148 hypothetical protein; Provisional
Probab=33.07 E-value=68 Score=25.79 Aligned_cols=32 Identities=16% Similarity=0.334 Sum_probs=23.9
Q ss_pred CceEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCC
Q 046167 8 RRRVVLVPSPHQGHINPMLQLGTILHSKGFSITVVHTQ 45 (424)
Q Consensus 8 ~~ril~~~~~~~GH~~p~~~la~~L~~~Gh~V~~~~~~ 45 (424)
.+|++.+..| .| ..+|..|++.||+|+.+=..
T Consensus 17 ~~kileIG~G-fG-----~~vA~~L~~~G~~ViaIDi~ 48 (134)
T PRK04148 17 NKKIVELGIG-FY-----FKVAKKLKESGFDVIVIDIN 48 (134)
T ss_pred CCEEEEEEec-CC-----HHHHHHHHHCCCEEEEEECC
Confidence 3678888877 44 24688899999999988553
No 462
>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]
Probab=32.98 E-value=50 Score=30.45 Aligned_cols=31 Identities=16% Similarity=0.294 Sum_probs=25.3
Q ss_pred eEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCC
Q 046167 10 RVVLVPSPHQGHINPMLQLGTILHSKGFSITVVHTQ 45 (424)
Q Consensus 10 ril~~~~~~~GH~~p~~~la~~L~~~Gh~V~~~~~~ 45 (424)
||.|+-.|..|. ++|+.|.++||+|+++-..
T Consensus 2 kIafIGLG~MG~-----pmA~~L~~aG~~v~v~~r~ 32 (286)
T COG2084 2 KIAFIGLGIMGS-----PMAANLLKAGHEVTVYNRT 32 (286)
T ss_pred eEEEEcCchhhH-----HHHHHHHHCCCEEEEEeCC
Confidence 677777766664 7899999999999999764
No 463
>PRK06194 hypothetical protein; Provisional
Probab=32.83 E-value=72 Score=29.03 Aligned_cols=38 Identities=13% Similarity=0.265 Sum_probs=24.9
Q ss_pred CcccCCCCceEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeC
Q 046167 1 MEEQGQRRRRVVLVPSPHQGHINPMLQLGTILHSKGFSITVVHT 44 (424)
Q Consensus 1 ~~~m~~~~~ril~~~~~~~GH~~p~~~la~~L~~~Gh~V~~~~~ 44 (424)
|+.|.. +.+++++++ |-+ -.+++++|.++|++|+++..
T Consensus 1 m~~~~~---k~vlVtGas-ggI--G~~la~~l~~~G~~V~~~~r 38 (287)
T PRK06194 1 MKDFAG---KVAVITGAA-SGF--GLAFARIGAALGMKLVLADV 38 (287)
T ss_pred CcCCCC---CEEEEeCCc-cHH--HHHHHHHHHHCCCEEEEEeC
Confidence 566653 344455543 222 34689999999999988765
No 464
>PLN00016 RNA-binding protein; Provisional
Probab=32.75 E-value=58 Score=31.28 Aligned_cols=35 Identities=23% Similarity=0.323 Sum_probs=24.9
Q ss_pred ceEEEEc--CCCccChHHHHHHHHHHHhCCCeEEEEeCC
Q 046167 9 RRVVLVP--SPHQGHINPMLQLGTILHSKGFSITVVHTQ 45 (424)
Q Consensus 9 ~ril~~~--~~~~GH~~p~~~la~~L~~~Gh~V~~~~~~ 45 (424)
++|+++. +|+.|.+ -..|+++|.++||+|+.++..
T Consensus 53 ~~VLVt~~~~GatG~i--G~~lv~~L~~~G~~V~~l~R~ 89 (378)
T PLN00016 53 KKVLIVNTNSGGHAFI--GFYLAKELVKAGHEVTLFTRG 89 (378)
T ss_pred ceEEEEeccCCCceeE--hHHHHHHHHHCCCEEEEEecC
Confidence 5787772 2334443 346789999999999999874
No 465
>PRK03094 hypothetical protein; Provisional
Probab=32.72 E-value=40 Score=24.28 Aligned_cols=20 Identities=15% Similarity=0.464 Sum_probs=16.3
Q ss_pred HHHHHHHHHhCCCeEEEEeC
Q 046167 25 MLQLGTILHSKGFSITVVHT 44 (424)
Q Consensus 25 ~~~la~~L~~~Gh~V~~~~~ 44 (424)
+-.+.++|+++||+|.=+-.
T Consensus 10 Ls~i~~~L~~~GYeVv~l~~ 29 (80)
T PRK03094 10 LTDVQQALKQKGYEVVQLRS 29 (80)
T ss_pred cHHHHHHHHHCCCEEEecCc
Confidence 34689999999999987754
No 466
>PRK06505 enoyl-(acyl carrier protein) reductase; Provisional
Probab=32.45 E-value=85 Score=28.46 Aligned_cols=33 Identities=12% Similarity=0.156 Sum_probs=24.8
Q ss_pred eEEEEcCCCcc-ChHHHHHHHHHHHhCCCeEEEEeC
Q 046167 10 RVVLVPSPHQG-HINPMLQLGTILHSKGFSITVVHT 44 (424)
Q Consensus 10 ril~~~~~~~G-H~~p~~~la~~L~~~Gh~V~~~~~ 44 (424)
|+++++..+.+ -+ -.++|++|.++|++|.+...
T Consensus 8 k~~lVTGas~~~GI--G~aiA~~la~~Ga~V~~~~r 41 (271)
T PRK06505 8 KRGLIMGVANDHSI--AWGIAKQLAAQGAELAFTYQ 41 (271)
T ss_pred CEEEEeCCCCCCcH--HHHHHHHHHhCCCEEEEecC
Confidence 78888876641 22 46899999999999988753
No 467
>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=32.45 E-value=72 Score=27.96 Aligned_cols=20 Identities=10% Similarity=0.237 Sum_probs=16.4
Q ss_pred HHHHHHHHhCCCeEEEEeCC
Q 046167 26 LQLGTILHSKGFSITVVHTQ 45 (424)
Q Consensus 26 ~~la~~L~~~Gh~V~~~~~~ 45 (424)
..+++.|.++||+|..+...
T Consensus 19 ~~l~~~l~~~g~~v~~~~r~ 38 (246)
T PRK05653 19 RAIALRLAADGAKVVIYDSN 38 (246)
T ss_pred HHHHHHHHHCCCEEEEEeCC
Confidence 47899999999998777663
No 468
>COG2099 CobK Precorrin-6x reductase [Coenzyme metabolism]
Probab=32.41 E-value=3.8e+02 Score=24.21 Aligned_cols=33 Identities=15% Similarity=0.209 Sum_probs=25.7
Q ss_pred hhhccccccccccc--cchh----hHHHhhhcCCceeec
Q 046167 309 EVLSHVAVGGFWSH--CGWN----STLESICEGVPMICM 341 (424)
Q Consensus 309 ~ll~~~~~~~~i~h--gG~~----t~~eal~~GvP~v~~ 341 (424)
.+|...+++++|+. ||.| -+.-|...|+|+|++
T Consensus 190 all~q~~id~vItK~SG~~Gg~~~Ki~aA~eLgi~VI~I 228 (257)
T COG2099 190 ALLEQYRIDVVVTKNSGGAGGTYEKIEAARELGIPVIMI 228 (257)
T ss_pred HHHHHhCCCEEEEccCCcccCcHHHHHHHHHcCCcEEEE
Confidence 37888888889986 4443 456789999999987
No 469
>PF10933 DUF2827: Protein of unknown function (DUF2827); InterPro: IPR021234 This is a family of uncharacterised proteins found in Burkholderia.
Probab=32.41 E-value=2.3e+02 Score=27.03 Aligned_cols=90 Identities=17% Similarity=0.223 Sum_probs=61.7
Q ss_pred CCCceeeecchhhhhc-ccccccccccc---chh-hHHHhhhcCCceeecCcccchhhHHHHHHhhhhcceecCcccchH
Q 046167 297 ENGYIVKWAPQKEVLS-HVAVGGFWSHC---GWN-STLESICEGVPMICMPFFEDQKVNARYLSHVWGVGLELEHELERG 371 (424)
Q Consensus 297 ~nv~v~~~ip~~~ll~-~~~~~~~i~hg---G~~-t~~eal~~GvP~v~~P~~~DQ~~na~~~~~~~G~g~~~~~~~~~~ 371 (424)
+...+.+..+-.+.|+ +.|+ ||+|= |.| .-.|+|+-|-|+|- |+..+. .+|-..+. ++..
T Consensus 253 gkasfegR~~~p~fla~~tD~--VvSHqWeN~lNYlY~daLyggYPLVH---------NS~~l~---d~GYYY~~-fD~~ 317 (364)
T PF10933_consen 253 GKASFEGRFDFPDFLAQHTDA--VVSHQWENPLNYLYYDALYGGYPLVH---------NSPLLK---DVGYYYPD-FDAF 317 (364)
T ss_pred CeeEEeeecChHHHHHhCCCE--EEeccccchhhHHHHHHHhcCCCccc---------Ccchhc---ccCcCCCC-ccHH
Confidence 4445667777777554 5555 99993 344 45899999999985 666663 46666666 6666
Q ss_pred HHHHHHHHHhcccc--hHHHHHHHHHHHHHHH
Q 046167 372 AVEKAVRKLTVDKE--GEFLRQRAAQLKEEVE 401 (424)
Q Consensus 372 ~L~~ai~~ll~~~~--~~~~~~~a~~l~~~~~ 401 (424)
+=++++.+++.+.+ -++|+++++++=..+.
T Consensus 318 ~G~r~L~~A~~~HD~~~~~Y~~ra~~~l~~~~ 349 (364)
T PF10933_consen 318 EGARQLLRAIREHDADLDAYRARARRLLDRLS 349 (364)
T ss_pred HHHHHHHHHHHHccccHHHHHHHHHHHHHhhC
Confidence 66666666664433 4789999998877664
No 470
>TIGR02699 archaeo_AfpA archaeoflavoprotein AfpA. The prototypical member of this archaeal protein family is AF1518 from Archaeoglobus fulgidus. This homodimer with two non-covalently bound FMN cofactors can receive electrons from ferredoxin, but not from a number of other electron donors such as NADH or rubredoxin. It can then donate electrons to various reductases.
Probab=32.32 E-value=65 Score=27.26 Aligned_cols=27 Identities=19% Similarity=0.212 Sum_probs=22.1
Q ss_pred ccChHH-HHHHHHHHHh-CCCeEEEEeCC
Q 046167 19 QGHINP-MLQLGTILHS-KGFSITVVHTQ 45 (424)
Q Consensus 19 ~GH~~p-~~~la~~L~~-~Gh~V~~~~~~ 45 (424)
.||... .+.+.++|++ +||+|.++.++
T Consensus 9 sg~~l~e~v~~l~~L~~~~g~eV~vv~S~ 37 (174)
T TIGR02699 9 SGDKLPETYSIMKDVKNRYGDEIDVFLSK 37 (174)
T ss_pred cHHHHHHHHHHHHHHHHhcCCEEEEEECH
Confidence 377655 8899999985 59999999995
No 471
>PRK08690 enoyl-(acyl carrier protein) reductase; Provisional
Probab=32.30 E-value=73 Score=28.66 Aligned_cols=38 Identities=11% Similarity=0.152 Sum_probs=25.7
Q ss_pred CcccCCCCceEEEEcCC-CccChHHHHHHHHHHHhCCCeEEEEe
Q 046167 1 MEEQGQRRRRVVLVPSP-HQGHINPMLQLGTILHSKGFSITVVH 43 (424)
Q Consensus 1 ~~~m~~~~~ril~~~~~-~~GH~~p~~~la~~L~~~Gh~V~~~~ 43 (424)
|+.|.. |+++++.+ +.+-+ -.++|++|.++|++|.+..
T Consensus 1 ~~~~~~---k~~lITGa~~~~GI--G~a~a~~l~~~G~~v~~~~ 39 (261)
T PRK08690 1 MGFLQG---KKILITGMISERSI--AYGIAKACREQGAELAFTY 39 (261)
T ss_pred CCccCC---cEEEEECCCCCCcH--HHHHHHHHHHCCCEEEEEc
Confidence 666653 56666664 22222 2689999999999998753
No 472
>PRK09330 cell division protein FtsZ; Validated
Probab=32.29 E-value=3.8e+02 Score=25.97 Aligned_cols=116 Identities=8% Similarity=-0.028 Sum_probs=54.6
Q ss_pred CceEEEEcCCCccChHHHHHHHHHHHhCC-CeEEEEeCCCCCCCCCCCCCceEEeCCCCCCCCccccccHHHHHHHHHHh
Q 046167 8 RRRVVLVPSPHQGHINPMLQLGTILHSKG-FSITVVHTQFNSPNPSNHPEFEFQSIPDGLMDVNISARNLVDSILLLNEN 86 (424)
Q Consensus 8 ~~ril~~~~~~~GH~~p~~~la~~L~~~G-h~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (424)
+.+|-++-.|+.|- .....|.+.| +.|.|++-...........--.-+.+...+..+.....++. .-...
T Consensus 13 ~~~IkViGvGG~G~-----Nav~~m~~~~~~~v~fia~NTD~q~L~~~~a~~ki~lG~~~t~GlGaG~~pe-~G~~a--- 83 (384)
T PRK09330 13 GAVIKVIGVGGGGG-----NAVNRMIEEGIQGVEFIAANTDAQALLKSKAPVKIQLGEKLTRGLGAGANPE-VGRKA--- 83 (384)
T ss_pred CCeEEEEEECCcHH-----HHHHHHHHcCCCCceEEEEeCcHHHHhcCCCCeEEEcCCcccccCCCCCCHH-HHHHH---
Confidence 57888888777664 3455666665 66666665433222111111123334433322222222222 11111
Q ss_pred chhHHHHHHHHHHhhcCCCCCceEEEecCcc---------chHHHHHHHhCCceEEEecchH
Q 046167 87 CREPFRNWLVQMIKEQQPGDEIVCIIYDEVM---------YFAEASASQLNVQSIILRTSGA 139 (424)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~pDlvi~d~~~---------~~~~~~A~~lgiP~v~~~~~~~ 139 (424)
...... .+++..+ ..|+|+.-... +....+|+.+|++++.+.+.|+
T Consensus 84 aee~~e-~I~~~l~------~~D~vfI~AGmGGGTGTGaapvIA~iake~g~ltvaVvt~PF 138 (384)
T PRK09330 84 AEESRE-EIREALE------GADMVFITAGMGGGTGTGAAPVVAEIAKELGILTVAVVTKPF 138 (384)
T ss_pred HHHHHH-HHHHHHc------CCCEEEEEecCCCcccHHHHHHHHHHHHHcCCcEEEEEecCc
Confidence 111111 2222222 46665543211 3334688899999998877664
No 473
>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=32.29 E-value=55 Score=30.71 Aligned_cols=32 Identities=13% Similarity=0.312 Sum_probs=28.8
Q ss_pred ceEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCC
Q 046167 9 RRVVLVPSPHQGHINPMLQLGTILHSKGFSITVVHTQ 45 (424)
Q Consensus 9 ~ril~~~~~~~GH~~p~~~la~~L~~~Gh~V~~~~~~ 45 (424)
++|.++-.|++|- +||..|.+.||+|++....
T Consensus 2 ~kI~ViGaGswGT-----ALA~~la~ng~~V~lw~r~ 33 (329)
T COG0240 2 MKIAVIGAGSWGT-----ALAKVLARNGHEVRLWGRD 33 (329)
T ss_pred ceEEEEcCChHHH-----HHHHHHHhcCCeeEEEecC
Confidence 5899999999985 8999999999999999985
No 474
>PRK12827 short chain dehydrogenase; Provisional
Probab=32.28 E-value=80 Score=27.78 Aligned_cols=38 Identities=21% Similarity=0.368 Sum_probs=24.4
Q ss_pred CcccCCCCceEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeC
Q 046167 1 MEEQGQRRRRVVLVPSPHQGHINPMLQLGTILHSKGFSITVVHT 44 (424)
Q Consensus 1 ~~~m~~~~~ril~~~~~~~GH~~p~~~la~~L~~~Gh~V~~~~~ 44 (424)
|..|.. ++++++- +.|.+- ..+|+.|.++||+|+++..
T Consensus 1 ~~~~~~--~~ilItG--asg~iG--~~la~~l~~~g~~v~~~~~ 38 (249)
T PRK12827 1 MASLDS--RRVLITG--GSGGLG--RAIAVRLAADGADVIVLDI 38 (249)
T ss_pred CCCcCC--CEEEEEC--CCChHH--HHHHHHHHHCCCeEEEEcC
Confidence 444443 3665543 334332 5789999999999988764
No 475
>PRK02155 ppnK NAD(+)/NADH kinase family protein; Provisional
Probab=32.28 E-value=65 Score=29.84 Aligned_cols=52 Identities=13% Similarity=0.141 Sum_probs=35.8
Q ss_pred ccccccccchhhHHHhhhc----CCceeecCcccchhhHHHHHHhhhhcceecCcccchHHHHHHHHHHhcc
Q 046167 316 VGGFWSHCGWNSTLESICE----GVPMICMPFFEDQKVNARYLSHVWGVGLELEHELERGAVEKAVRKLTVD 383 (424)
Q Consensus 316 ~~~~i~hgG~~t~~eal~~----GvP~v~~P~~~DQ~~na~~~~~~~G~g~~~~~~~~~~~L~~ai~~ll~~ 383 (424)
++++|+-||-||+++++.. ++|++.+-. + .+| .+. ..+++++.++|+++++.
T Consensus 64 ~d~vi~~GGDGt~l~~~~~~~~~~~pilGIn~-------------G-~lG-FL~-~~~~~~~~~~l~~~~~g 119 (291)
T PRK02155 64 ADLAVVLGGDGTMLGIGRQLAPYGVPLIGINH-------------G-RLG-FIT-DIPLDDMQETLPPMLAG 119 (291)
T ss_pred CCEEEEECCcHHHHHHHHHhcCCCCCEEEEcC-------------C-Ccc-ccc-cCCHHHHHHHHHHHHcC
Confidence 3449999999999999764 667776532 1 222 111 36778888888888765
No 476
>COG0062 Uncharacterized conserved protein [Function unknown]
Probab=32.26 E-value=70 Score=27.79 Aligned_cols=34 Identities=29% Similarity=0.491 Sum_probs=27.1
Q ss_pred ceEEEEcCCCc--cChHHHHHHHHHHHhCCCeEEEEeCC
Q 046167 9 RRVVLVPSPHQ--GHINPMLQLGTILHSKGFSITVVHTQ 45 (424)
Q Consensus 9 ~ril~~~~~~~--GH~~p~~~la~~L~~~Gh~V~~~~~~ 45 (424)
.||++++.+|. |+ -+..|+.|..+|++|+++...
T Consensus 50 ~~v~vlcG~GnNGGD---G~VaAR~L~~~G~~V~v~~~~ 85 (203)
T COG0062 50 RRVLVLCGPGNNGGD---GLVAARHLKAAGYAVTVLLLG 85 (203)
T ss_pred CEEEEEECCCCccHH---HHHHHHHHHhCCCceEEEEeC
Confidence 47888887754 66 456799999999999999864
No 477
>PRK13011 formyltetrahydrofolate deformylase; Reviewed
Probab=32.16 E-value=1.5e+02 Score=27.27 Aligned_cols=54 Identities=17% Similarity=0.143 Sum_probs=32.4
Q ss_pred CCceEEEEcCCCccChHHHHHHHHHHHh--CCCeEEEEeCC-CCCCCCCCCCCceEEeCC
Q 046167 7 RRRRVVLVPSPHQGHINPMLQLGTILHS--KGFSITVVHTQ-FNSPNPSNHPEFEFQSIP 63 (424)
Q Consensus 7 ~~~ril~~~~~~~GH~~p~~~la~~L~~--~Gh~V~~~~~~-~~~~~~~~~~g~~~~~~~ 63 (424)
+++||+++..++ |+ -+.+|..+.+. .+++|.++.+. ..........|+.+..++
T Consensus 88 ~~~ri~vl~Sg~-g~--nl~al~~~~~~~~~~~~i~~visn~~~~~~lA~~~gIp~~~~~ 144 (286)
T PRK13011 88 ARPKVLIMVSKF-DH--CLNDLLYRWRIGELPMDIVGVVSNHPDLEPLAAWHGIPFHHFP 144 (286)
T ss_pred cCceEEEEEcCC-cc--cHHHHHHHHHcCCCCcEEEEEEECCccHHHHHHHhCCCEEEeC
Confidence 368998888875 44 24445555444 36899888663 222222333577777665
No 478
>PLN02293 adenine phosphoribosyltransferase
Probab=32.05 E-value=1.5e+02 Score=25.38 Aligned_cols=28 Identities=18% Similarity=0.121 Sum_probs=21.6
Q ss_pred CceEEEecC--ccchHHHHHHHhCCceEEE
Q 046167 107 EIVCIIYDE--VMYFAEASASQLNVQSIIL 134 (424)
Q Consensus 107 ~pDlvi~d~--~~~~~~~~A~~lgiP~v~~ 134 (424)
++|+|++-. ....+..+|..+|+|++..
T Consensus 62 ~~d~Ivg~e~~Gi~lA~~lA~~Lg~p~v~~ 91 (187)
T PLN02293 62 GISVVAGIEARGFIFGPPIALAIGAKFVPL 91 (187)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHCCCEEEE
Confidence 689988743 2267788999999998864
No 479
>PRK06904 replicative DNA helicase; Validated
Probab=32.04 E-value=2.2e+02 Score=28.41 Aligned_cols=35 Identities=11% Similarity=0.176 Sum_probs=28.8
Q ss_pred EEEEcCCCccChHHHHHHHHHHHh-CCCeEEEEeCC
Q 046167 11 VVLVPSPHQGHINPMLQLGTILHS-KGFSITVVHTQ 45 (424)
Q Consensus 11 il~~~~~~~GH~~p~~~la~~L~~-~Gh~V~~~~~~ 45 (424)
+++..-|+.|-..=++.+|...+. .|+.|.|++-+
T Consensus 224 iiIaarPg~GKTafalnia~~~a~~~g~~Vl~fSlE 259 (472)
T PRK06904 224 IIVAARPSMGKTTFAMNLCENAAMASEKPVLVFSLE 259 (472)
T ss_pred EEEEeCCCCChHHHHHHHHHHHHHhcCCeEEEEecc
Confidence 466678899999988999988765 59999999876
No 480
>PRK06398 aldose dehydrogenase; Validated
Probab=31.93 E-value=79 Score=28.32 Aligned_cols=38 Identities=16% Similarity=0.087 Sum_probs=24.9
Q ss_pred CcccCCCCceEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeC
Q 046167 1 MEEQGQRRRRVVLVPSPHQGHINPMLQLGTILHSKGFSITVVHT 44 (424)
Q Consensus 1 ~~~m~~~~~ril~~~~~~~GH~~p~~~la~~L~~~Gh~V~~~~~ 44 (424)
|+.|+. |.+++++++. .+ -.++|+.|.++||+|.++..
T Consensus 1 ~~~l~g---k~vlItGas~-gI--G~~ia~~l~~~G~~Vi~~~r 38 (258)
T PRK06398 1 DLGLKD---KVAIVTGGSQ-GI--GKAVVNRLKEEGSNVINFDI 38 (258)
T ss_pred CCCCCC---CEEEEECCCc-hH--HHHHHHHHHHCCCeEEEEeC
Confidence 555553 4455555432 22 24689999999999998765
No 481
>CHL00194 ycf39 Ycf39; Provisional
Probab=31.89 E-value=57 Score=30.42 Aligned_cols=33 Identities=9% Similarity=0.257 Sum_probs=23.2
Q ss_pred ceEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCC
Q 046167 9 RRVVLVPSPHQGHINPMLQLGTILHSKGFSITVVHTQ 45 (424)
Q Consensus 9 ~ril~~~~~~~GH~~p~~~la~~L~~~Gh~V~~~~~~ 45 (424)
|||+++ |+.|.+- ..|+++|.++||+|+.++..
T Consensus 1 MkIlVt--GatG~iG--~~lv~~Ll~~g~~V~~l~R~ 33 (317)
T CHL00194 1 MSLLVI--GATGTLG--RQIVRQALDEGYQVRCLVRN 33 (317)
T ss_pred CEEEEE--CCCcHHH--HHHHHHHHHCCCeEEEEEcC
Confidence 366664 3445433 35788999999999999864
No 482
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=31.89 E-value=89 Score=30.84 Aligned_cols=38 Identities=18% Similarity=0.355 Sum_probs=33.5
Q ss_pred CceEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCC
Q 046167 8 RRRVVLVPSPHQGHINPMLQLGTILHSKGFSITVVHTQ 45 (424)
Q Consensus 8 ~~ril~~~~~~~GH~~p~~~la~~L~~~Gh~V~~~~~~ 45 (424)
+..|+|+..+|.|-..-...||..|.++|++|.+++.+
T Consensus 95 p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D 132 (437)
T PRK00771 95 PQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAAD 132 (437)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecCC
Confidence 45677777889999999999999999999999999886
No 483
>PF06626 DUF1152: Protein of unknown function (DUF1152); InterPro: IPR010581 This family consists of several hypothetical archaeal proteins of unknown function.
Probab=31.85 E-value=48 Score=30.63 Aligned_cols=34 Identities=15% Similarity=0.180 Sum_probs=30.6
Q ss_pred EEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCC
Q 046167 12 VLVPSPHQGHINPMLQLGTILHSKGFSITVVHTQ 45 (424)
Q Consensus 12 l~~~~~~~GH~~p~~~la~~L~~~Gh~V~~~~~~ 45 (424)
|++..||.|++.-.+.++..|.+.|.++.+.+-.
T Consensus 1 Lv~g~GGGGDvv~a~~l~~~l~~~G~~~~lg~~~ 34 (297)
T PF06626_consen 1 LVIGIGGGGDVVSALPLAFALRKLGKEVVLGSVV 34 (297)
T ss_pred CEEEecCcHHHHHHHHHHHHHHhcCCceEEEEee
Confidence 4677899999999999999999999999998764
No 484
>PRK14092 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase
Probab=31.82 E-value=1.2e+02 Score=25.40 Aligned_cols=32 Identities=19% Similarity=0.251 Sum_probs=23.6
Q ss_pred CCCeEEEEEeCCcccCCHHHHHHHHHHHHhCC
Q 046167 235 SPKSVIYVSLGSVASMDKKELEEMAWGLVNSK 266 (424)
Q Consensus 235 ~~~~~I~vs~Gs~~~~~~~~~~~~~~a~~~~~ 266 (424)
+.+..+|+++||......+.+...+..+...+
T Consensus 5 ~~~~~v~i~LGSNlg~~~~~l~~A~~~L~~~~ 36 (163)
T PRK14092 5 PASALAYVGLGANLGDAAATLRSVLAELAAAP 36 (163)
T ss_pred CcCCEEEEEecCchHhHHHHHHHHHHHHHhCC
Confidence 34558999999998656677777777776643
No 485
>PRK08303 short chain dehydrogenase; Provisional
Probab=31.78 E-value=87 Score=29.08 Aligned_cols=32 Identities=22% Similarity=0.300 Sum_probs=25.2
Q ss_pred eEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeC
Q 046167 10 RVVLVPSPHQGHINPMLQLGTILHSKGFSITVVHT 44 (424)
Q Consensus 10 ril~~~~~~~GH~~p~~~la~~L~~~Gh~V~~~~~ 44 (424)
|++++++++.| =-.++|++|.++|++|.++..
T Consensus 9 k~~lITGgs~G---IG~aia~~la~~G~~Vv~~~r 40 (305)
T PRK08303 9 KVALVAGATRG---AGRGIAVELGAAGATVYVTGR 40 (305)
T ss_pred CEEEEeCCCch---HHHHHHHHHHHCCCEEEEEec
Confidence 67777776654 237899999999999998765
No 486
>PF14359 DUF4406: Domain of unknown function (DUF4406)
Probab=31.64 E-value=73 Score=23.67 Aligned_cols=28 Identities=18% Similarity=0.419 Sum_probs=20.0
Q ss_pred EEcCCCcc--Ch--HHHHHHHHHHHhCCCeEE
Q 046167 13 LVPSPHQG--HI--NPMLQLGTILHSKGFSIT 40 (424)
Q Consensus 13 ~~~~~~~G--H~--~p~~~la~~L~~~Gh~V~ 40 (424)
+++.|-+| +. ..+-..|++|.++||+|.
T Consensus 2 YIaGPmtG~~~~N~~~f~~~a~~L~~~G~~vv 33 (92)
T PF14359_consen 2 YIAGPMTGLPDYNRPAFNAAAKRLRAKGYEVV 33 (92)
T ss_pred eEeCCcCCCcchHHHHHHHHHHHHHHCCCEEe
Confidence 45555445 43 247789999999998886
No 487
>PRK05294 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=31.53 E-value=4.1e+02 Score=29.82 Aligned_cols=38 Identities=16% Similarity=0.343 Sum_probs=29.6
Q ss_pred CceEEEEcCCC--ccCh----HHHHHHHHHHHhCCCeEEEEeCC
Q 046167 8 RRRVVLVPSPH--QGHI----NPMLQLGTILHSKGFSITVVHTQ 45 (424)
Q Consensus 8 ~~ril~~~~~~--~GH~----~p~~~la~~L~~~Gh~V~~~~~~ 45 (424)
-+|||++..|. .|+. +.-..++++|++.||+|.++.+.
T Consensus 7 ~~kvLiig~G~~~igq~~e~d~sg~~~~~aLke~G~~vi~v~~~ 50 (1066)
T PRK05294 7 IKKILIIGSGPIVIGQACEFDYSGTQACKALREEGYRVVLVNSN 50 (1066)
T ss_pred CCEEEEECCchhhhcccccccchHHHHHHHHHHcCCEEEEEcCC
Confidence 36898888775 3654 34578999999999999999764
No 488
>PRK07178 pyruvate carboxylase subunit A; Validated
Probab=31.38 E-value=3e+02 Score=27.49 Aligned_cols=33 Identities=6% Similarity=0.199 Sum_probs=25.2
Q ss_pred eEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCCCC
Q 046167 10 RVVLVPSPHQGHINPMLQLGTILHSKGFSITVVHTQFN 47 (424)
Q Consensus 10 ril~~~~~~~GH~~p~~~la~~L~~~Gh~V~~~~~~~~ 47 (424)
|||++-.+ -+ .+.+++++++.|+++..+.+...
T Consensus 4 kvLi~~~g---ei--a~~ii~a~~~~Gi~~v~v~~~~d 36 (472)
T PRK07178 4 KILIANRG---EI--AVRIVRACAEMGIRSVAIYSEAD 36 (472)
T ss_pred EEEEECCc---HH--HHHHHHHHHHcCCeEEEEeCCCc
Confidence 88888433 22 56899999999999999887633
No 489
>PF06564 YhjQ: YhjQ protein; InterPro: IPR017746 The YhjQ protein is encoded immediately upstream of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae, and in several species is clearly part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm [], based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=31.29 E-value=81 Score=28.28 Aligned_cols=36 Identities=17% Similarity=0.170 Sum_probs=28.8
Q ss_pred eEEEEc-CCCccChHHHHHHHHHHHhCCCeEEEEeCC
Q 046167 10 RVVLVP-SPHQGHINPMLQLGTILHSKGFSITVVHTQ 45 (424)
Q Consensus 10 ril~~~-~~~~GH~~p~~~la~~L~~~Gh~V~~~~~~ 45 (424)
+|.+++ -||-|-..=..+||..|++.|++|..+=-+
T Consensus 3 ~iai~s~kGGvG~TTltAnLA~aL~~~G~~VlaID~d 39 (243)
T PF06564_consen 3 VIAIVSPKGGVGKTTLTANLAWALARLGESVLAIDLD 39 (243)
T ss_pred EEEEecCCCCCCHHHHHHHHHHHHHHCCCcEEEEeCC
Confidence 444444 557799999999999999999999988553
No 490
>PF08357 SEFIR: SEFIR domain; InterPro: IPR013568 This domain is found in IL17 receptors (IL17Rs, e.g. Q60943 from SWISSPROT) and SEF proteins (e.g. Q8QHJ9 from SWISSPROT). The latter are feedback inhibitors of FGF signalling and are also thought to be receptors. Due to its similarity to the TIR domain (IPR000157 from INTERPRO), the SEFIR region is thought to be involved in homotypic interactions with other SEFIR/TIR-domain-containing proteins. Thus, SEFs and IL17Rs may be involved in TOLL/IL1R-like signalling pathways [].
Probab=31.23 E-value=63 Score=26.21 Aligned_cols=31 Identities=16% Similarity=0.311 Sum_probs=26.6
Q ss_pred EEEEcCCCccChHHHHHHHHHHHhC-CCeEEE
Q 046167 11 VVLVPSPHQGHINPMLQLGTILHSK-GFSITV 41 (424)
Q Consensus 11 il~~~~~~~GH~~p~~~la~~L~~~-Gh~V~~ 41 (424)
++.++.-+..|..-.++||..|.+. |.+|.+
T Consensus 4 fI~Ys~d~~~h~~~V~~la~~L~~~~g~~V~l 35 (150)
T PF08357_consen 4 FISYSHDSEEHKEWVLALAEFLRQNCGIDVIL 35 (150)
T ss_pred EEEeCCCCHHHHHHHHHHHHHHHhccCCceee
Confidence 4566677889999999999999999 999874
No 491
>PRK14852 hypothetical protein; Provisional
Probab=31.11 E-value=1.9e+02 Score=31.76 Aligned_cols=117 Identities=13% Similarity=-0.038 Sum_probs=58.1
Q ss_pred CceEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCCCCCCCCCCCCCceEEeCCCCCCCCccccccHHHHHHHHHHhc
Q 046167 8 RRRVVLVPSPHQGHINPMLQLGTILHSKGFSITVVHTQFNSPNPSNHPEFEFQSIPDGLMDVNISARNLVDSILLLNENC 87 (424)
Q Consensus 8 ~~ril~~~~~~~GH~~p~~~la~~L~~~Gh~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (424)
..||+++..||.|. .++..|+..|..=..+.-....+. .|++-+.+-..-+-+.....-..+.+..+...+
T Consensus 332 ~srVlVvGlGGlGs-----~ia~~LAraGVG~I~L~D~D~Ve~----SNLNRQ~l~~~~dIG~~Kaevaa~~l~~INP~v 402 (989)
T PRK14852 332 RSRVAIAGLGGVGG-----IHLMTLARTGIGNFNLADFDAYSP----VNLNRQYGASIASFGRGKLDVMTERALSVNPFL 402 (989)
T ss_pred cCcEEEECCcHHHH-----HHHHHHHHcCCCeEEEEcCCEecc----cccccccCCChhhCCChHHHHHHHHHHHHCCCC
Confidence 36999999888876 578888888864333333222222 222222111000001111111122222222111
Q ss_pred ------hhHHHHHHHHHHhhcCCCCCceEEEe--cCccc----hHHHHHHHhCCceEEEecchH
Q 046167 88 ------REPFRNWLVQMIKEQQPGDEIVCIIY--DEVMY----FAEASASQLNVQSIILRTSGA 139 (424)
Q Consensus 88 ------~~~~~~~~~~~~~~~~~~~~pDlvi~--d~~~~----~~~~~A~~lgiP~v~~~~~~~ 139 (424)
...-.+.++.+.+ +.|+||. |.+.. .....|.+.|||+|......+
T Consensus 403 ~I~~~~~~I~~en~~~fl~------~~DiVVDa~D~~~~~~rr~l~~~c~~~~IP~I~ag~~G~ 460 (989)
T PRK14852 403 DIRSFPEGVAAETIDAFLK------DVDLLVDGIDFFALDIRRRLFNRALELGIPVITAGPLGY 460 (989)
T ss_pred eEEEEecCCCHHHHHHHhh------CCCEEEECCCCccHHHHHHHHHHHHHcCCCEEEeecccc
Confidence 1111234555543 7999997 55432 444578899999998766443
No 492
>PF12695 Abhydrolase_5: Alpha/beta hydrolase family; PDB: 3D0K_B 2I3D_B 3DOH_B 3DOI_B 3PFB_A 3S2Z_B 3PFC_A 3QM1_A 3PF8_B 3PF9_A ....
Probab=31.07 E-value=1.2e+02 Score=23.73 Aligned_cols=33 Identities=15% Similarity=0.262 Sum_probs=26.4
Q ss_pred EEEcCCCccChHHHHHHHHHHHhCCCeEEEEeC
Q 046167 12 VLVPSPHQGHINPMLQLGTILHSKGFSITVVHT 44 (424)
Q Consensus 12 l~~~~~~~GH~~p~~~la~~L~~~Gh~V~~~~~ 44 (424)
+++..|..+.-.-+..+++.|.++|+.|.....
T Consensus 2 vv~~HG~~~~~~~~~~~~~~l~~~G~~v~~~~~ 34 (145)
T PF12695_consen 2 VVLLHGWGGSRRDYQPLAEALAEQGYAVVAFDY 34 (145)
T ss_dssp EEEECTTTTTTHHHHHHHHHHHHTTEEEEEESC
T ss_pred EEEECCCCCCHHHHHHHHHHHHHCCCEEEEEec
Confidence 455566666677799999999999999999854
No 493
>PF03701 UPF0181: Uncharacterised protein family (UPF0181); InterPro: IPR005371 This family contains small proteins of about 50 amino acids of unknown function. The family includes YoaH P76260 from SWISSPROT.
Probab=30.92 E-value=1.5e+02 Score=19.25 Aligned_cols=29 Identities=17% Similarity=0.158 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHh
Q 046167 390 RQRAAQLKEEVELSTRKGGFSYNSLNELLDLIN 422 (424)
Q Consensus 390 ~~~a~~l~~~~~~~~~~~g~~~~a~~~~~~~~~ 422 (424)
.+.++++.+.+.. |-|+..|+..+.+.|+
T Consensus 14 Q~AvE~Iq~LMaq----GmSsgEAI~~VA~~iR 42 (51)
T PF03701_consen 14 QQAVERIQELMAQ----GMSSGEAIAIVAQEIR 42 (51)
T ss_pred HHHHHHHHHHHHh----cccHHHHHHHHHHHHH
Confidence 4444444444433 3666777777766665
No 494
>PRK08226 short chain dehydrogenase; Provisional
Probab=30.90 E-value=75 Score=28.43 Aligned_cols=39 Identities=10% Similarity=0.198 Sum_probs=24.8
Q ss_pred CcccCCCCceEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCC
Q 046167 1 MEEQGQRRRRVVLVPSPHQGHINPMLQLGTILHSKGFSITVVHTQ 45 (424)
Q Consensus 1 ~~~m~~~~~ril~~~~~~~GH~~p~~~la~~L~~~Gh~V~~~~~~ 45 (424)
|..|.. |.++++.++ |-+ -..+++.|.++|++|+++...
T Consensus 1 ~~~~~~---~~~lItG~s-~gi--G~~la~~l~~~G~~Vv~~~r~ 39 (263)
T PRK08226 1 MGKLTG---KTALITGAL-QGI--GEGIARVFARHGANLILLDIS 39 (263)
T ss_pred CCCCCC---CEEEEeCCC-ChH--HHHHHHHHHHCCCEEEEecCC
Confidence 555554 344455443 222 346899999999999888653
No 495
>PRK00133 metG methionyl-tRNA synthetase; Reviewed
Probab=30.89 E-value=71 Score=33.61 Aligned_cols=28 Identities=21% Similarity=0.359 Sum_probs=24.1
Q ss_pred CccChHHHHH---HHHHHHhCCCeEEEEeCC
Q 046167 18 HQGHINPMLQ---LGTILHSKGFSITVVHTQ 45 (424)
Q Consensus 18 ~~GH~~p~~~---la~~L~~~Gh~V~~~~~~ 45 (424)
..||+.+++. +++.++.+|++|.++++-
T Consensus 18 HiGH~~~~l~aDv~aR~~r~~G~~V~~~~g~ 48 (673)
T PRK00133 18 HLGHLVEYIQADIWVRYQRMRGHEVLFVCAD 48 (673)
T ss_pred cccchHHHHHHHHHHHHHHhcCCeeEEeCcc
Confidence 4599998774 799999999999999984
No 496
>TIGR00521 coaBC_dfp phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase, prokaryotic. This model represents a bifunctional enzyme that catalyzes the second and third steps (cysteine ligation, EC 6.3.2.5, and decarboxylation, EC 4.1.1.36) in the biosynthesis of coenzyme A (CoA) from pantothenate in bacteria. In early descriptions of this flavoprotein, a ts mutation in one region of the protein appeared to cause a defect in DNA metaobolism rather than an increased need for the pantothenate precursor beta-alanine. This protein was then called dfp, for DNA/pantothenate metabolism flavoprotein. The authors responsible for detecting phosphopantothenate--cysteine ligase activity suggest renaming this bifunctional protein coaBC for its role in CoA biosynthesis. This enzyme contains the FMN cofactor, but no FAD or pyruvoyl group. The amino-terminal region contains the phosphopantothenoylcysteine decarboxylase activity.
Probab=30.79 E-value=58 Score=31.58 Aligned_cols=37 Identities=16% Similarity=0.203 Sum_probs=29.2
Q ss_pred ceEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCCC
Q 046167 9 RRVVLVPSPHQGHINPMLQLGTILHSKGFSITVVHTQF 46 (424)
Q Consensus 9 ~ril~~~~~~~GH~~p~~~la~~L~~~Gh~V~~~~~~~ 46 (424)
+||++.-.|+.| .+-...+.+.|++.|++|.++.++.
T Consensus 4 k~IllgiTGSia-a~~~~~ll~~L~~~g~~V~vv~T~~ 40 (390)
T TIGR00521 4 KKILLGVTGGIA-AYKTVELVRELVRQGAEVKVIMTEA 40 (390)
T ss_pred CEEEEEEeCHHH-HHHHHHHHHHHHhCCCEEEEEECHh
Confidence 477766655444 4668999999999999999999863
No 497
>COG0299 PurN Folate-dependent phosphoribosylglycinamide formyltransferase PurN [Nucleotide transport and metabolism]
Probab=30.74 E-value=2.3e+02 Score=24.47 Aligned_cols=132 Identities=8% Similarity=0.033 Sum_probs=77.7
Q ss_pred eEEEEEeCCcccCCHH-HHHHHHHHHHhCCCCeEEEEcCCCCCCCcccccCchhHHHHhcCCCceeeecchhhhhccccc
Q 046167 238 SVIYVSLGSVASMDKK-ELEEMAWGLVNSKQPFLWVIRPRTNNAPEGIELLPKVLAEDVQENGYIVKWAPQKEVLSHVAV 316 (424)
Q Consensus 238 ~~I~vs~Gs~~~~~~~-~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~nv~v~~~ip~~~ll~~~~~ 316 (424)
|+.++...... +++ +-..+.+.+...+.++++..+-- .-|.+.|.++.+.++ |=-||++
T Consensus 52 pt~~~~~k~~~--~r~~~d~~l~~~l~~~~~dlvvLAGyM--------rIL~~~fl~~~~grI----------lNIHPSL 111 (200)
T COG0299 52 PTVVLDRKEFP--SREAFDRALVEALDEYGPDLVVLAGYM--------RILGPEFLSRFEGRI----------LNIHPSL 111 (200)
T ss_pred CEEEeccccCC--CHHHHHHHHHHHHHhcCCCEEEEcchH--------HHcCHHHHHHhhcce----------EecCccc
Confidence 35555544444 344 44468999999999988666321 346667665554311 1225887
Q ss_pred cccccccchhhHHHhhhcCCceeecCc-ccc-hhhHHHHHHhhhhcceecCcccchHHHHHHHHHHhcccchHHHHHHHH
Q 046167 317 GGFWSHCGWNSTLESICEGVPMICMPF-FED-QKVNARYLSHVWGVGLELEHELERGAVEKAVRKLTVDKEGEFLRQRAA 394 (424)
Q Consensus 317 ~~~i~hgG~~t~~eal~~GvP~v~~P~-~~D-Q~~na~~~~~~~G~g~~~~~~~~~~~L~~ai~~ll~~~~~~~~~~~a~ 394 (424)
.=.++|..+..+|+.+|+..-.+-. +.| .-+-+-.+.+ ..+.+...-|.+.|.+.|...-. .-|-+..+
T Consensus 112 --LP~f~G~h~~~~A~~aG~k~sG~TVH~V~e~vD~GpII~Q---~~Vpv~~~Dt~etl~~RV~~~Eh----~lyp~~v~ 182 (200)
T COG0299 112 --LPAFPGLHAHEQALEAGVKVSGCTVHFVTEGVDTGPIIAQ---AAVPVLPGDTAETLEARVLEQEH----RLYPLAVK 182 (200)
T ss_pred --ccCCCCchHHHHHHHcCCCccCcEEEEEccCCCCCCeEEE---EeeeecCCCCHHHHHHHHHHHHH----HHHHHHHH
Confidence 8889999999999999999754432 222 2222222222 12222223578888888877433 35555555
Q ss_pred HHHH
Q 046167 395 QLKE 398 (424)
Q Consensus 395 ~l~~ 398 (424)
.+.+
T Consensus 183 ~~~~ 186 (200)
T COG0299 183 LLAE 186 (200)
T ss_pred HHHh
Confidence 5443
No 498
>TIGR00639 PurN phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent. In phylogenetic analyses, the member from Saccharomyces cerevisiae shows a long branch length but membership in the family, while the formyltetrahydrofolate deformylases form a closely related outgroup.
Probab=30.70 E-value=3.5e+02 Score=23.20 Aligned_cols=52 Identities=10% Similarity=0.128 Sum_probs=28.7
Q ss_pred ceEEEEcCCCccChHHHHHHHHHHHhCCC--eEEEEeCC-CCCCC--CCCCCCceEEeCC
Q 046167 9 RRVVLVPSPHQGHINPMLQLGTILHSKGF--SITVVHTQ-FNSPN--PSNHPEFEFQSIP 63 (424)
Q Consensus 9 ~ril~~~~~~~GH~~p~~~la~~L~~~Gh--~V~~~~~~-~~~~~--~~~~~g~~~~~~~ 63 (424)
+||+++..++.+- +.++.+++.+.++ +|.++.+. ..... .....|+.+..++
T Consensus 1 ~riail~sg~gs~---~~~ll~~~~~~~l~~~I~~vi~~~~~~~~~~~A~~~gip~~~~~ 57 (190)
T TIGR00639 1 KRIVVLISGNGSN---LQAIIDACKEGKIPASVVLVISNKPDAYGLERAAQAGIPTFVLS 57 (190)
T ss_pred CeEEEEEcCCChh---HHHHHHHHHcCCCCceEEEEEECCccchHHHHHHHcCCCEEEEC
Confidence 4787777755443 4466777777665 67765554 22221 2222466665543
No 499
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=30.62 E-value=80 Score=22.31 Aligned_cols=23 Identities=17% Similarity=0.213 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHhCCCeEEEEeCC
Q 046167 23 NPMLQLGTILHSKGFSITVVHTQ 45 (424)
Q Consensus 23 ~p~~~la~~L~~~Gh~V~~~~~~ 45 (424)
.--+.+|..|+++|.+|+++...
T Consensus 9 ~ig~E~A~~l~~~g~~vtli~~~ 31 (80)
T PF00070_consen 9 FIGIELAEALAELGKEVTLIERS 31 (80)
T ss_dssp HHHHHHHHHHHHTTSEEEEEESS
T ss_pred HHHHHHHHHHHHhCcEEEEEecc
Confidence 45678999999999999999885
No 500
>KOG1210 consensus Predicted 3-ketosphinganine reductase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=30.61 E-value=83 Score=29.32 Aligned_cols=35 Identities=23% Similarity=0.324 Sum_probs=27.1
Q ss_pred CceEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCC
Q 046167 8 RRRVVLVPSPHQGHINPMLQLGTILHSKGFSITVVHTQ 45 (424)
Q Consensus 8 ~~ril~~~~~~~GH~~p~~~la~~L~~~Gh~V~~~~~~ 45 (424)
+.+..++++++.|= -+.+|.+++.+|++||+.+.+
T Consensus 32 ~~~hi~itggS~gl---gl~la~e~~~~ga~Vti~ar~ 66 (331)
T KOG1210|consen 32 PRRHILITGGSSGL---GLALALECKREGADVTITARS 66 (331)
T ss_pred ccceEEEecCcchh---hHHHHHHHHHccCceEEEecc
Confidence 34566666666653 578999999999999999875
Done!