BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 046169
(253 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2ROE|A Chain A, Solution Structure Of Thermus Thermophilus Hb8 Ttha1718
Protein In Vitro
pdb|2ROG|A Chain A, Solution Structure Of Thermus Thermophilus Hb8 Ttha1718
Protein In Living E. Coli Cells
Length = 66
Score = 36.2 bits (82), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 36/64 (56%)
Query: 10 IELRVFVNCCDGCKRKVKKALRGVEGVLKIEIDPLQPKVTATGNVDPKVLIKKLLKAGKQ 69
++L+V C+ C V KAL+ V GV K+E+ + + G DPK L++ + + G +
Sbjct: 2 LKLKVEGMTCNHCVMAVTKALKKVPGVEKVEVSLEKGEALVEGTADPKALVQAVEEEGYK 61
Query: 70 AELW 73
AE+
Sbjct: 62 AEVL 65
>pdb|1OSD|A Chain A, Crystal Structure Of Oxidized Merp From Ralstonia
Metallidurans Ch34
pdb|1OSD|B Chain B, Crystal Structure Of Oxidized Merp From Ralstonia
Metallidurans Ch34
Length = 72
Score = 32.7 bits (73), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 38/77 (49%), Gaps = 6/77 (7%)
Query: 7 TKKIELRVFVNCCDGCKRKVKKALRGVEGVLKIEIDPLQPKVTATGNVDPKVLIKKLLKA 66
T+ + L V C C VKKA+ VEGV K+++ + T + D K ++KL KA
Sbjct: 2 TQTVTLSVPGMTCSACPITVKKAISKVEGVSKVDVTFETRQAVVTFD-DAKTSVQKLTKA 60
Query: 67 GKQAELWDNGNQSAVKE 83
D G S+VK+
Sbjct: 61 -----TADAGYPSSVKQ 72
>pdb|1AFI|A Chain A, Structure Of The Reduced Form Of Merp, The Periplasmic
Protein From The Bacterial Mercury Detoxification
System, Nmr, 20 Structures
pdb|1AFJ|A Chain A, Structure Of The Mercury-Bound Form Of Merp, The
Periplasmic Protein From The Bacterial Mercury
Detoxification System, Nmr, 20 Structures
pdb|2HQI|A Chain A, Nmr Solution Structure Of The Oxidized Form Of Merp, 14
Structures
Length = 72
Score = 32.0 bits (71), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 39/77 (50%), Gaps = 6/77 (7%)
Query: 7 TKKIELRVFVNCCDGCKRKVKKALRGVEGVLKIEIDPLQPKVTATGNVDPKVLIKKLLKA 66
T+ + L V C C VKKAL VEGV K+++ + + T + D K ++KL KA
Sbjct: 2 TQTVTLAVPGMTCAACPITVKKALSKVEGVSKVDVGFEKREAVVTFD-DTKASVQKLTKA 60
Query: 67 GKQAELWDNGNQSAVKE 83
D G S+VK+
Sbjct: 61 -----TADAGYPSSVKQ 72
>pdb|2CRL|A Chain A, The Apo Form Of Hma Domain Of Copper Chaperone For
Superoxide Dismutase
Length = 98
Score = 30.0 bits (66), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 32/60 (53%), Gaps = 2/60 (3%)
Query: 19 CDGCKRKVKKALRGVEGVLKIEIDPLQPKVTATGNVDPKVLIKKLLKA-GKQAELWDNGN 77
C C V+K+L+GV GV +E+ L+ ++ P ++ LL+ G+QA L G+
Sbjct: 29 CQSCVDAVRKSLQGVAGVQDVEVH-LEDQMVLVHTTLPSQEVQALLEGTGRQAVLKGMGS 87
>pdb|1SB6|A Chain A, Solution Structure Of A Cyanobacterial Copper
Metallochaperone, Scatx1
pdb|2XMT|A Chain A, Copper Chaperone Atx1 From Synechocystis Pcc6803 (Cu1
Form)
pdb|2XMT|B Chain B, Copper Chaperone Atx1 From Synechocystis Pcc6803 (Cu1
Form)
pdb|2XMU|A Chain A, Copper Chaperone Atx1 From Synechocystis Pcc6803 (Cu2
Form)
pdb|2XMU|B Chain B, Copper Chaperone Atx1 From Synechocystis Pcc6803 (Cu2
Form)
pdb|2XMJ|A Chain A, Visualising The Metal-Binding Versatility Of Copper
Trafficking Sites:atx1 Side-To-Side (Aerobic)
pdb|2XMJ|B Chain B, Visualising The Metal-Binding Versatility Of Copper
Trafficking Sites:atx1 Side-To-Side (Aerobic)
pdb|2XMK|A Chain A, Visualising The Metal-Binding Versatility Of Copper
Trafficking Sites: Atx1 Side-To-Side (Anaerobic)
pdb|2XMK|B Chain B, Visualising The Metal-Binding Versatility Of Copper
Trafficking Sites: Atx1 Side-To-Side (Anaerobic)
Length = 64
Score = 30.0 bits (66), Expect = 1.2, Method: Composition-based stats.
Identities = 17/62 (27%), Positives = 29/62 (46%)
Query: 10 IELRVFVNCCDGCKRKVKKALRGVEGVLKIEIDPLQPKVTATGNVDPKVLIKKLLKAGKQ 69
I+L V C+ C V KA++ + +++D KVT T + + L + AG +
Sbjct: 3 IQLTVPTIACEACAEAVTKAVQNEDAQATVQVDLTSKKVTITSALGEEQLRTAIASAGHE 62
Query: 70 AE 71
E
Sbjct: 63 VE 64
>pdb|4A46|A Chain A, Crosstalk Between Cu(I) And Zn(Ii) Homeostasis
pdb|4A46|B Chain B, Crosstalk Between Cu(I) And Zn(Ii) Homeostasis
pdb|4A46|C Chain C, Crosstalk Between Cu(I) And Zn(Ii) Homeostasis
pdb|4A46|D Chain D, Crosstalk Between Cu(I) And Zn(Ii) Homeostasis
Length = 63
Score = 30.0 bits (66), Expect = 1.3, Method: Composition-based stats.
Identities = 17/62 (27%), Positives = 29/62 (46%)
Query: 10 IELRVFVNCCDGCKRKVKKALRGVEGVLKIEIDPLQPKVTATGNVDPKVLIKKLLKAGKQ 69
I+L V C+ C V KA++ + +++D KVT T + + L + AG +
Sbjct: 2 IQLTVPTIACEACAEAVTKAVQNEDAQATVQVDLTSKKVTITSALGEEQLRTAIASAGHE 61
Query: 70 AE 71
E
Sbjct: 62 VE 63
>pdb|2XMV|A Chain A, Copper Chaperone Atx1 From Synechocystis Pcc6803 (Cu1,
Trimeric Form, His61tyr Mutant)
pdb|2XMV|B Chain B, Copper Chaperone Atx1 From Synechocystis Pcc6803 (Cu1,
Trimeric Form, His61tyr Mutant)
pdb|2XMV|C Chain C, Copper Chaperone Atx1 From Synechocystis Pcc6803 (Cu1,
Trimeric Form, His61tyr Mutant)
pdb|2XMV|D Chain D, Copper Chaperone Atx1 From Synechocystis Pcc6803 (Cu1,
Trimeric Form, His61tyr Mutant)
pdb|2XMV|E Chain E, Copper Chaperone Atx1 From Synechocystis Pcc6803 (Cu1,
Trimeric Form, His61tyr Mutant)
pdb|2XMV|F Chain F, Copper Chaperone Atx1 From Synechocystis Pcc6803 (Cu1,
Trimeric Form, His61tyr Mutant)
pdb|2XMM|A Chain A, Visualising The Metal-Binding Versatility Of Copper
Trafficking Sites: H61y Atx1 Side-To-Side
pdb|2XMM|B Chain B, Visualising The Metal-Binding Versatility Of Copper
Trafficking Sites: H61y Atx1 Side-To-Side
Length = 64
Score = 29.3 bits (64), Expect = 1.9, Method: Composition-based stats.
Identities = 17/62 (27%), Positives = 29/62 (46%)
Query: 10 IELRVFVNCCDGCKRKVKKALRGVEGVLKIEIDPLQPKVTATGNVDPKVLIKKLLKAGKQ 69
I+L V C+ C V KA++ + +++D KVT T + + L + AG +
Sbjct: 3 IQLTVPTIACEACAEAVTKAVQNEDAQATVQVDLTSKKVTITSALGEEQLRTAIASAGYE 62
Query: 70 AE 71
E
Sbjct: 63 VE 64
>pdb|1O7D|A Chain A, The Structure Of The Bovine Lysosomal A-Mannosidase
Suggests A Novel Mechanism For Low Ph Activation
Length = 298
Score = 28.1 bits (61), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 31/59 (52%), Gaps = 8/59 (13%)
Query: 160 LQPEM-NYNMYPKTLPEVGNIKTQTQYCY----MVEPCPITVPYYAIPSYATHLLPPPT 213
++P+M N ++ P T +VG +KT QY Y ++P + Y + S + LL PT
Sbjct: 9 VKPDMLNVHLVPHTHDDVGWLKTVDQYFYGIYNNIQPAGVQ---YILDSVISSLLANPT 64
>pdb|4A47|A Chain A, Crosstalk Between Cu(I) And Zn(Ii) Homeostasis
pdb|4A47|B Chain B, Crosstalk Between Cu(I) And Zn(Ii) Homeostasis
pdb|4A47|C Chain C, Crosstalk Between Cu(I) And Zn(Ii) Homeostasis
pdb|4A47|D Chain D, Crosstalk Between Cu(I) And Zn(Ii) Homeostasis
Length = 63
Score = 27.7 bits (60), Expect = 5.9, Method: Composition-based stats.
Identities = 17/62 (27%), Positives = 28/62 (45%)
Query: 10 IELRVFVNCCDGCKRKVKKALRGVEGVLKIEIDPLQPKVTATGNVDPKVLIKKLLKAGKQ 69
I+L V C C V KA++ + +++D KVT T + + L + AG +
Sbjct: 2 IQLTVPTMDCTSCAEAVTKAVQNEDAQATVQVDLTSKKVTITSALGEEQLRTAIASAGHE 61
Query: 70 AE 71
E
Sbjct: 62 VE 63
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.313 0.133 0.401
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,741,678
Number of Sequences: 62578
Number of extensions: 319512
Number of successful extensions: 319
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 310
Number of HSP's gapped (non-prelim): 12
length of query: 253
length of database: 14,973,337
effective HSP length: 97
effective length of query: 156
effective length of database: 8,903,271
effective search space: 1388910276
effective search space used: 1388910276
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 50 (23.9 bits)