BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 046169
(253 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9SZN7|HIP26_ARATH Heavy metal-associated isoprenylated plant protein 26
OS=Arabidopsis thaliana GN=HIPP26 PE=1 SV=1
Length = 153
Score = 56.2 bits (134), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 49/74 (66%), Gaps = 2/74 (2%)
Query: 1 MAKEADTKKIELRVFVNCCDGCKRKVKKALRGVEGVLKIEIDPLQPKVTATGNVDP-KVL 59
+ K + +E++V ++C +GC+RKV++++ G++GV + ++P KVT G VDP KV+
Sbjct: 19 IKKRKQLQTVEIKVKMDC-EGCERKVRRSVEGMKGVSSVTLEPKAHKVTVVGYVDPNKVV 77
Query: 60 IKKLLKAGKQAELW 73
+ + GK+ ELW
Sbjct: 78 ARMSHRTGKKVELW 91
>sp|Q6FU61|CCS1_CANGA Superoxide dismutase 1 copper chaperone OS=Candida glabrata
(strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 /
NRRL Y-65) GN=CCS1 PE=3 SV=1
Length = 239
Score = 38.9 bits (89), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 41/87 (47%), Gaps = 3/87 (3%)
Query: 1 MAKEADTKKIELRVFVNCCDGCKRKVKKALRGVEGVLKIEIDPLQPKVTATGNVDPKVLI 60
M AD + V ++C D C +KK L G+ G+ ++ D Q ++ V P V+I
Sbjct: 1 MTANADFYEATYAVPMHCTD-CTDDIKKCLNGITGIKDLQFDISQQMMSVNSCVAPSVII 59
Query: 61 KKLLKAGKQAELWDNG--NQSAVKELK 85
L G+ A + G N SAV L+
Sbjct: 60 NALRDCGRDAIIRGAGKPNSSAVAILE 86
>sp|Q9KPZ7|COPA_VIBCH Copper-exporting P-type ATPase A OS=Vibrio cholerae serotype O1
(strain ATCC 39315 / El Tor Inaba N16961) GN=copA PE=3
SV=1
Length = 915
Score = 37.4 bits (85), Expect = 0.10, Method: Composition-based stats.
Identities = 22/75 (29%), Positives = 38/75 (50%), Gaps = 1/75 (1%)
Query: 2 AKEADTKKIELRVFVNCCDGCKRKVKKALRGVEGVLKIEIDPLQPKVTATG-NVDPKVLI 60
A EA ++ + L + C C V+KAL VEGV +++ + G +P+ L+
Sbjct: 166 ATEASSQTLSLLIKGMTCASCVASVEKALLSVEGVQSAQVNLTEQSALVRGIFANPQPLL 225
Query: 61 KKLLKAGKQAELWDN 75
+ +G QAE+ D+
Sbjct: 226 NAIQSSGYQAEILDD 240
>sp|Q8ZCA7|COPA_YERPE Copper-exporting P-type ATPase A OS=Yersinia pestis GN=copA PE=3
SV=1
Length = 961
Score = 36.2 bits (82), Expect = 0.24, Method: Composition-based stats.
Identities = 31/100 (31%), Positives = 42/100 (42%), Gaps = 11/100 (11%)
Query: 2 AKEADTKKIELRVFVNCCDGCKRKVKKALRGVEGVLKIEIDPLQPKVTATGNVDPKVLIK 61
A EA T +EL + C C V+KAL V GV I D G D + LI
Sbjct: 63 ATEAQTPDVELHLSGLSCGHCTETVRKALEAVSGV--ISADVTLESANVYGKADIQTLIA 120
Query: 62 KLLKAGKQAELWDNGNQSAVKELKGDMPVTTNEKEKSKPE 101
+ +AG A Q + K + P+T +S+PE
Sbjct: 121 AVEQAGYHA------TQQGIDSPKTE-PLT--HSAQSQPE 151
Score = 31.2 bits (69), Expect = 7.1, Method: Composition-based stats.
Identities = 19/52 (36%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
Query: 19 CDGCKRKVKKALRGVEGVLKIEIDPLQPKVTATGNVDPKVLIKKLLKAGKQA 70
C C ++VK AL E V E++ KV TG D LI+ + + G QA
Sbjct: 14 CMNCAQRVKAALESREDVHHAEVNVHYAKV--TGEADTHALIETIKQTGYQA 63
Score = 31.2 bits (69), Expect = 7.8, Method: Composition-based stats.
Identities = 18/71 (25%), Positives = 36/71 (50%)
Query: 5 ADTKKIELRVFVNCCDGCKRKVKKALRGVEGVLKIEIDPLQPKVTATGNVDPKVLIKKLL 64
++ + ++L + C C KV+ AL+ V+GV ++ + TG + + LI +
Sbjct: 223 SEGESVQLLLTGMSCASCVSKVQNALQRVDGVQVARVNLAERSALVTGTQNNEALIAAVK 282
Query: 65 KAGKQAELWDN 75
AG AE+ ++
Sbjct: 283 NAGYGAEIIED 293
>sp|P17239|MERA_THIFE Mercuric reductase OS=Thiobacillus ferrooxidans GN=merA PE=1 SV=2
Length = 547
Score = 36.2 bits (82), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 33/56 (58%), Gaps = 2/56 (3%)
Query: 11 ELRVFVNCCDGCKRKVKKALRGVEGVLKIEIDPLQPKVTATGNVDPKVLIKKLLKA 66
EL + CDGC V+KAL GV GV + ++ P TA ++ +V +++L+KA
Sbjct: 8 ELAITGMTCDGCAAHVRKALEGVPGVREAQVS--YPDATARVVLEGEVPMQRLIKA 61
>sp|Q6BK66|CCS1_DEBHA Superoxide dismutase 1 copper chaperone OS=Debaryomyces hansenii
(strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 /
IGC 2968) GN=CCS1 PE=3 SV=2
Length = 250
Score = 34.7 bits (78), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 32/65 (49%), Gaps = 2/65 (3%)
Query: 19 CDGCKRKVKKALRGVEGVLKIEIDPLQPKVTATGNVDPKVLIKKLLKAGKQAELWDNG-- 76
C C V +L+ + G+ K +ID VT G+V P ++K + GK A + G
Sbjct: 15 CQSCVDSVSSSLKSLNGISKYDIDLKSNLVTTEGSVPPSEIVKAIQSTGKDAIIRGTGAP 74
Query: 77 NQSAV 81
N +AV
Sbjct: 75 NSAAV 79
>sp|Q2QI47|USH2A_MOUSE Usherin OS=Mus musculus GN=Ush2A PE=1 SV=2
Length = 5193
Score = 34.3 bits (77), Expect = 0.90, Method: Composition-based stats.
Identities = 16/49 (32%), Positives = 24/49 (48%)
Query: 170 PKTLPEVGNIKTQTQYCYMVEPCPITVPYYAIPSYATHLLPPPTFYGQP 218
P+T + N+ TQYC+ V+ C +Y++P T PP G P
Sbjct: 1198 PETSATIWNLVPFTQYCFSVQGCTNESCFYSLPIIVTTAQAPPQTQGPP 1246
>sp|Q6BZU2|CCS1_YARLI Superoxide dismutase 1 copper chaperone OS=Yarrowia lipolytica
(strain CLIB 122 / E 150) GN=CCS1 PE=3 SV=1
Length = 234
Score = 33.9 bits (76), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 36/73 (49%), Gaps = 2/73 (2%)
Query: 19 CDGCKRKVKKALRGVEGVLKIEIDPLQPKVTATGNVDPKVLIKKLLKAGKQAELWDNG-- 76
C+ C VK+AL V+G+ ++ + ++ TG P ++K + GK A + G
Sbjct: 13 CESCCDSVKQALANVQGIESVDCKLVDQLISVTGTSAPSQIVKAVQNIGKDAIVRGTGQP 72
Query: 77 NQSAVKELKGDMP 89
N +AV L+ P
Sbjct: 73 NSAAVCILESHAP 85
>sp|P04131|MERP_PSEAI Mercuric transport protein periplasmic component OS=Pseudomonas
aeruginosa GN=merP PE=4 SV=1
Length = 91
Score = 32.0 bits (71), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 38/77 (49%), Gaps = 6/77 (7%)
Query: 7 TKKIELRVFVNCCDGCKRKVKKALRGVEGVLKIEIDPLQPKVTATGNVDPKVLIKKLLKA 66
T+ + L V C C VKKA+ VEGV K+++ + T + D K ++KL KA
Sbjct: 21 TQTVTLSVPGMTCSACPITVKKAISEVEGVSKVDVTFETRQAVVTFD-DAKTSVQKLTKA 79
Query: 67 GKQAELWDNGNQSAVKE 83
D G S+VK+
Sbjct: 80 TA-----DAGYPSSVKQ 91
>sp|O96064|MYSP_MYTGA Paramyosin OS=Mytilus galloprovincialis PE=2 SV=1
Length = 864
Score = 32.0 bits (71), Expect = 4.2, Method: Composition-based stats.
Identities = 37/156 (23%), Positives = 68/156 (43%), Gaps = 14/156 (8%)
Query: 1 MAKEADTKKIELRVFVNCC---DGCK--RKVKKALRGVEGVLKIEIDPLQPKVTATGNVD 55
MAK+ + ++I R+ + D C+ R L + L +EI + ++ T
Sbjct: 305 MAKQEELEEIRRRLSIKIQELEDTCEQLRTRCNTLEKTKNKLTVEIREITIELENT---- 360
Query: 56 PKVLIKKLLKAGKQAELWDNGNQSAVKELKGDMPVTTNEKEKSKPECDKAKTSDSCGKET 115
+++++ L K +Q E + Q +L + NEK + EC + K +++ E
Sbjct: 361 -QIIVQDLTKRNRQLENENAALQKRCDDLSAENGQLRNEKANLEAECARLKVANAELAEK 419
Query: 116 DKEKESKNGRNGNGDKAAKKEDKVKESAANSSIPEV 151
+ E +N N + A E K AAN +I E+
Sbjct: 420 NANLERENAGLQNALREANNELK----AANRTINEL 451
>sp|P94186|MERP_ALCSP Mercuric transport protein periplasmic component OS=Alcaligenes
sp. GN=merP PE=3 SV=1
Length = 91
Score = 31.6 bits (70), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 38/77 (49%), Gaps = 6/77 (7%)
Query: 7 TKKIELRVFVNCCDGCKRKVKKALRGVEGVLKIEIDPLQPKVTATGNVDPKVLIKKLLKA 66
T+ + L V C C VKKA+ VEGV KI++ + T + D K ++KL KA
Sbjct: 21 TQTVTLSVPGMTCSTCPITVKKAISKVEGVSKIDVTFETREAVVTFD-DAKTSVQKLTKA 79
Query: 67 GKQAELWDNGNQSAVKE 83
D G S+VK+
Sbjct: 80 -----TGDAGYPSSVKQ 91
>sp|P04129|MERP_SHIFL Mercuric transport protein periplasmic component OS=Shigella
flexneri GN=merP PE=1 SV=1
Length = 91
Score = 31.6 bits (70), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 39/77 (50%), Gaps = 6/77 (7%)
Query: 7 TKKIELRVFVNCCDGCKRKVKKALRGVEGVLKIEIDPLQPKVTATGNVDPKVLIKKLLKA 66
T+ + L V C C VKKAL VEGV K+++ + + T + D K ++KL KA
Sbjct: 21 TQTVTLAVPGMTCAACPITVKKALSKVEGVSKVDVGFEKREAVVTFD-DTKASVQKLTKA 79
Query: 67 GKQAELWDNGNQSAVKE 83
D G S+VK+
Sbjct: 80 -----TADAGYPSSVKQ 91
>sp|B5RSP9|CLU_DEBHA Clustered mitochondria protein homolog OS=Debaryomyces hansenii
(strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 /
IGC 2968) GN=CLU1 PE=3 SV=1
Length = 1323
Score = 31.2 bits (69), Expect = 7.9, Method: Composition-based stats.
Identities = 31/128 (24%), Positives = 51/128 (39%), Gaps = 24/128 (18%)
Query: 81 VKELKGDMPVTTNEKEKSKPECDKAKTSDSCGKETDKEKESKNGRNGNGDKAAKKEDKVK 140
+K++ V E K K E +K T GK+ DKE+E N D KED K
Sbjct: 754 LKKITEARKVNEEEISKRKEESEKKATE---GKDQDKEEEKAN------DNEKNKEDD-K 803
Query: 141 ESAANSSIPEVIKNENPLPLQPEMNYNMYPKTLPEVGNIKTQTQYCYMVEPCPITVPYYA 200
E +N ++ N + L Y ++ E+ +++ +P Y
Sbjct: 804 EEVSNGEFEPIVANFDSL----------YRISVQEM----VARSVKHLLRKISADIPVYL 849
Query: 201 IPSYATHL 208
IP++ +H
Sbjct: 850 IPAFVSHF 857
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.312 0.131 0.390
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 102,634,516
Number of Sequences: 539616
Number of extensions: 4689299
Number of successful extensions: 17527
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 84
Number of HSP's successfully gapped in prelim test: 394
Number of HSP's that attempted gapping in prelim test: 15991
Number of HSP's gapped (non-prelim): 1594
length of query: 253
length of database: 191,569,459
effective HSP length: 115
effective length of query: 138
effective length of database: 129,513,619
effective search space: 17872879422
effective search space used: 17872879422
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 60 (27.7 bits)