BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 046172
         (198 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3NH4|A Chain A, Crystal Structure Of Murine Aminoacylase 3
          Length = 327

 Score = 32.7 bits (73), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 19/54 (35%), Positives = 25/54 (46%), Gaps = 1/54 (1%)

Query: 79  NNPGERSRLWHYEDIIEVLTFNTGTEKIEGICFDMSKVKQIGLNLDTFTKMHKL 132
            NPG   RL+ YE      TF+  +    GIC +M    Q  L  D F++M  L
Sbjct: 154 QNPGMPCRLFLYEPA-GTETFSVESISKNGICLEMGPQPQGVLRADLFSRMRAL 206


>pdb|3NFZ|A Chain A, Crystal Structure Of Murine Aminoacylase 3 In Complex With
           N-Acetyl-L- Tyrosine
 pdb|3NH5|A Chain A, Crystal Structure Of E177a-Mutant Murine Aminoacylase 3
 pdb|3NH8|A Chain A, Crystal Structure Of Murine Aminoacylase 3 In Complex With
           N-Acetyl-S- 1,2-Dichlorovinyl-L-Cysteine
          Length = 327

 Score = 32.0 bits (71), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 19/54 (35%), Positives = 24/54 (44%), Gaps = 1/54 (1%)

Query: 79  NNPGERSRLWHYEDIIEVLTFNTGTEKIEGICFDMSKVKQIGLNLDTFTKMHKL 132
            NPG   RL+ YE      TF+  +    GIC  M    Q  L  D F++M  L
Sbjct: 154 QNPGMPCRLFLYEPA-GTETFSVESISKNGICLAMGPQPQGVLRADLFSRMRAL 206


>pdb|2WBF|X Chain X, Crystal Structure Analysis Of Sera5e From Plasmodium
           Falciparum With Loop 690-700 Ordered
          Length = 265

 Score = 28.5 bits (62), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 27/105 (25%), Positives = 43/105 (40%), Gaps = 8/105 (7%)

Query: 93  IIEVLTFNTGT-------EKIEGICFDMSKVKQIGLNLDTFTKMHKLRFLKFYNSISEGK 145
           II+    N G+       E + G  F   KVK +  +      ++ + +  + NS  E K
Sbjct: 159 IIKTEVMNKGSVIAYIKAENVMGYEFSGKKVKNLCGDDTADHAVNIVGYGNYVNSEGEKK 218

Query: 146 SKCMVSNCQGPILAKVRYFHWDGYPLTSLPSNIYPDKLVF-LEIP 189
           S  +V N  GP      YF  D Y  T    N     ++F +++P
Sbjct: 219 SYWIVRNSWGPYWGDEGYFKVDMYGPTHCHFNFIHSVVIFNVDLP 263


>pdb|3CH2|X Chain X, Crystal Structure Analysis Of Sera5e From Plasmodium
           Falciparum
 pdb|3CH3|X Chain X, Crystal Structure Analysis Of Sera5e From Plasmodium
           Falciparum
          Length = 265

 Score = 27.7 bits (60), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 27/108 (25%), Positives = 45/108 (41%), Gaps = 8/108 (7%)

Query: 93  IIEVLTFNTGT-------EKIEGICFDMSKVKQIGLNLDTFTKMHKLRFLKFYNSISEGK 145
           II+    N G+       E + G  F   KV+ +  +      ++ + +  + NS  E K
Sbjct: 158 IIKTEVMNKGSVIAYIKAENVMGYEFSGKKVQNLCGDDTADHAVNIVGYGNYVNSEGEKK 217

Query: 146 SKCMVSNCQGPILAKVRYFHWDGYPLTSLPSNIYPDKLVF-LEIPDSN 192
           S  +V N  GP      YF  D Y  T    N     ++F +++P +N
Sbjct: 218 SYWIVRNSWGPYWGDEGYFKVDMYGPTHCHFNFIHSVVIFNVDLPMNN 265


>pdb|3IMH|A Chain A, Crystal Structure Of Galactose 1-Epimerase From
           Lactobacillus Acidophilus Ncfm
 pdb|3IMH|B Chain B, Crystal Structure Of Galactose 1-Epimerase From
           Lactobacillus Acidophilus Ncfm
          Length = 338

 Score = 27.7 bits (60), Expect = 4.9,   Method: Compositional matrix adjust.
 Identities = 24/89 (26%), Positives = 40/89 (44%), Gaps = 11/89 (12%)

Query: 56  NNQITMHDLLQEMGREVVKQESVN----NPGERSR-------LWHYEDIIEVLTFNTGTE 104
           +N+  +H LL+ +  ++     VN    N GER+          +Y  + E    + G  
Sbjct: 151 DNENNLHYLLEAVSDKLTIFNPVNHTYFNLGERAEDLNLQMNADYYLPVDEAGLPDRGMA 210

Query: 105 KIEGICFDMSKVKQIGLNLDTFTKMHKLR 133
           ++ G  FD  K K+IG  L++     KLR
Sbjct: 211 EVAGTAFDFRKTKRIGDALNSDDSQIKLR 239


>pdb|3P6L|A Chain A, Crystal Structure Of A Sugar Phosphate IsomeraseEPIMERASE
           (BDI_1903) From Parabacteroides Distasonis Atcc 8503 At
           1.85 A Resolution
          Length = 262

 Score = 27.3 bits (59), Expect = 5.2,   Method: Compositional matrix adjust.
 Identities = 18/76 (23%), Positives = 39/76 (51%), Gaps = 3/76 (3%)

Query: 63  DLLQEMGREVVKQESVNNPGERSRLWHYEDIIEVLTFNTGTEKIEGICFDMSKVKQIGLN 122
           DL++++ ++   + SV+N  + S  W  E++++ +   +G  +  G C D+   ++ GLN
Sbjct: 118 DLVEKLSKQYNIKISVHNHPQPSDYWKPENLLKAI---SGRSQSLGSCSDVGHWRREGLN 174

Query: 123 LDTFTKMHKLRFLKFY 138
                K  K R +  +
Sbjct: 175 QIDCLKQLKGRIISLH 190


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.322    0.141    0.429 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,013,791
Number of Sequences: 62578
Number of extensions: 235800
Number of successful extensions: 655
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 655
Number of HSP's gapped (non-prelim): 8
length of query: 198
length of database: 14,973,337
effective HSP length: 94
effective length of query: 104
effective length of database: 9,091,005
effective search space: 945464520
effective search space used: 945464520
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 49 (23.5 bits)