Query 046172
Match_columns 198
No_of_seqs 128 out of 1212
Neff 8.1
Searched_HMMs 46136
Date Fri Mar 29 09:23:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046172.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/046172hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03210 Resistant to P. syrin 100.0 1.3E-40 2.9E-45 321.3 13.0 197 1-198 429-628 (1153)
2 KOG4658 Apoptotic ATPase [Sign 99.9 1.5E-27 3.3E-32 223.9 3.9 186 1-192 404-629 (889)
3 PF07725 LRR_3: Leucine Rich R 98.0 3.5E-06 7.7E-11 41.8 1.4 17 182-198 1-17 (20)
4 PF13855 LRR_8: Leucine rich r 97.9 1.5E-05 3.2E-10 51.1 4.1 57 130-193 1-61 (61)
5 PF12799 LRR_4: Leucine Rich r 97.6 5E-05 1.1E-09 45.7 2.1 37 159-195 1-38 (44)
6 PLN00113 leucine-rich repeat r 97.5 0.00032 7E-09 67.6 8.5 107 79-193 42-176 (968)
7 PF13855 LRR_8: Leucine rich r 97.3 0.0004 8.6E-09 44.3 4.1 57 106-171 3-61 (61)
8 PLN03210 Resistant to P. syrin 97.2 0.0008 1.7E-08 66.5 6.6 61 125-191 652-714 (1153)
9 PLN03150 hypothetical protein; 97.1 0.00079 1.7E-08 62.4 5.6 67 122-194 434-503 (623)
10 PF12799 LRR_4: Leucine Rich r 97.0 0.00037 8.1E-09 41.8 1.6 39 130-175 1-40 (44)
11 PLN00113 leucine-rich repeat r 97.0 0.0009 1.9E-08 64.6 5.0 41 152-192 204-247 (968)
12 KOG0617 Ras suppressor protein 96.6 0.00042 9.1E-09 54.3 -0.3 65 123-194 49-115 (264)
13 KOG0444 Cytoskeletal regulator 96.6 0.00043 9.3E-09 63.6 -0.4 66 121-194 95-163 (1255)
14 KOG4658 Apoptotic ATPase [Sign 96.6 0.0011 2.4E-08 63.6 2.1 76 110-192 575-653 (889)
15 KOG0617 Ras suppressor protein 96.5 0.00058 1.3E-08 53.5 -0.2 73 118-195 90-164 (264)
16 KOG0444 Cytoskeletal regulator 96.3 0.00091 2E-08 61.5 -0.3 48 149-196 211-260 (1255)
17 PF14580 LRR_9: Leucine-rich r 95.5 0.0081 1.8E-07 46.9 2.0 63 125-194 59-126 (175)
18 PRK15370 E3 ubiquitin-protein 95.0 0.038 8.2E-07 52.5 5.1 37 158-195 261-297 (754)
19 PLN03150 hypothetical protein; 94.7 0.047 1E-06 50.8 4.8 64 122-191 458-525 (623)
20 KOG3665 ZYG-1-like serine/thre 94.7 0.014 3.1E-07 54.8 1.3 62 124-193 167-232 (699)
21 PRK15370 E3 ubiquitin-protein 94.5 0.081 1.7E-06 50.3 5.8 57 130-195 220-276 (754)
22 PF14580 LRR_9: Leucine-rich r 94.3 0.043 9.3E-07 42.8 3.0 61 128-196 40-103 (175)
23 PF00560 LRR_1: Leucine Rich R 94.3 0.016 3.4E-07 29.3 0.4 19 160-178 1-19 (22)
24 PF13504 LRR_7: Leucine rich r 94.2 0.033 7.1E-07 26.4 1.4 16 160-175 2-17 (17)
25 KOG0472 Leucine-rich repeat pr 93.9 0.04 8.6E-07 48.5 2.3 46 122-175 497-543 (565)
26 KOG0472 Leucine-rich repeat pr 93.0 0.047 1E-06 48.1 1.3 67 121-195 243-311 (565)
27 PRK15386 type III secretion pr 92.7 0.14 3.1E-06 45.2 3.9 40 131-177 73-113 (426)
28 KOG4194 Membrane glycoprotein 92.6 0.069 1.5E-06 49.1 2.0 21 120-140 211-231 (873)
29 KOG1259 Nischarin, modulator o 92.3 0.051 1.1E-06 46.3 0.6 59 131-196 285-344 (490)
30 COG4886 Leucine-rich repeat (L 92.3 0.046 9.9E-07 47.4 0.4 59 131-196 141-201 (394)
31 KOG0618 Serine/threonine phosp 92.2 0.024 5.1E-07 54.2 -1.5 71 120-191 397-486 (1081)
32 KOG0618 Serine/threonine phosp 92.1 0.052 1.1E-06 52.0 0.5 63 125-194 63-127 (1081)
33 KOG4237 Extracellular matrix p 92.0 0.022 4.8E-07 49.8 -1.8 87 107-195 70-178 (498)
34 KOG4237 Extracellular matrix p 91.8 0.047 1E-06 47.8 -0.0 68 120-194 264-335 (498)
35 PRK15387 E3 ubiquitin-protein 91.6 0.39 8.5E-06 45.9 5.8 24 8-31 48-71 (788)
36 KOG4194 Membrane glycoprotein 91.1 0.1 2.3E-06 48.0 1.4 21 120-140 259-279 (873)
37 KOG2739 Leucine-rich acidic nu 90.8 0.17 3.7E-06 41.8 2.2 66 123-196 58-131 (260)
38 PRK15387 E3 ubiquitin-protein 89.6 0.4 8.7E-06 45.8 4.0 36 159-196 282-317 (788)
39 cd00116 LRR_RI Leucine-rich re 89.3 0.12 2.5E-06 43.0 0.1 37 158-194 220-263 (319)
40 KOG4579 Leucine-rich repeat (L 89.1 0.07 1.5E-06 40.5 -1.2 68 120-194 67-136 (177)
41 KOG3665 ZYG-1-like serine/thre 88.9 0.14 2.9E-06 48.4 0.3 70 120-195 138-209 (699)
42 KOG0532 Leucine-rich repeat (L 87.8 0.07 1.5E-06 48.7 -2.2 58 132-196 145-204 (722)
43 smart00370 LRR Leucine-rich re 87.3 0.4 8.6E-06 24.8 1.4 21 158-178 1-21 (26)
44 smart00369 LRR_TYP Leucine-ric 87.3 0.4 8.6E-06 24.8 1.4 21 158-178 1-21 (26)
45 cd00116 LRR_RI Leucine-rich re 86.8 0.18 3.9E-06 41.8 -0.2 70 123-194 98-178 (319)
46 KOG2982 Uncharacterized conser 86.0 0.52 1.1E-05 40.2 2.1 69 123-196 90-161 (418)
47 PRK15386 type III secretion pr 85.2 1.1 2.3E-05 39.9 3.7 37 130-177 94-133 (426)
48 KOG0531 Protein phosphatase 1, 85.2 0.53 1.2E-05 41.4 1.9 62 126-195 114-176 (414)
49 COG4886 Leucine-rich repeat (L 84.6 0.56 1.2E-05 40.6 1.7 64 126-196 112-178 (394)
50 KOG1259 Nischarin, modulator o 82.2 0.7 1.5E-05 39.5 1.3 39 158-196 351-389 (490)
51 smart00365 LRR_SD22 Leucine-ri 80.6 1.3 2.8E-05 23.4 1.5 17 180-196 1-17 (26)
52 KOG0531 Protein phosphatase 1, 80.3 0.91 2E-05 39.9 1.4 63 126-195 91-154 (414)
53 smart00364 LRR_BAC Leucine-ric 79.3 1.4 3E-05 23.3 1.4 20 158-177 1-20 (26)
54 KOG0532 Leucine-rich repeat (L 77.3 1.4 3E-05 40.7 1.7 35 150-184 224-259 (722)
55 KOG1909 Ran GTPase-activating 76.8 1.1 2.5E-05 38.6 1.0 88 105-194 186-283 (382)
56 PF13306 LRR_5: Leucine rich r 76.6 5.3 0.00011 28.3 4.4 19 121-139 26-44 (129)
57 PF13306 LRR_5: Leucine rich r 71.6 11 0.00023 26.6 5.0 19 121-139 3-21 (129)
58 KOG1859 Leucine-rich repeat pr 70.1 0.71 1.5E-05 43.8 -2.0 63 124-193 203-266 (1096)
59 KOG3207 Beta-tubulin folding c 69.3 3 6.5E-05 37.2 1.8 62 125-193 241-313 (505)
60 PF13516 LRR_6: Leucine Rich r 59.0 6.7 0.00015 19.5 1.3 14 181-194 2-15 (24)
61 KOG3864 Uncharacterized conser 50.8 28 0.0006 28.1 4.1 16 66-81 61-76 (221)
62 KOG3207 Beta-tubulin folding c 48.7 13 0.00027 33.4 2.1 66 124-194 265-339 (505)
63 KOG1644 U2-associated snRNP A' 48.7 30 0.00066 28.0 4.0 41 124-171 58-100 (233)
64 smart00368 LRR_RI Leucine rich 47.1 15 0.00033 19.2 1.5 14 181-194 2-15 (28)
65 KOG1859 Leucine-rich repeat pr 47.0 4.1 8.9E-05 38.9 -1.2 69 120-196 177-247 (1096)
66 KOG2739 Leucine-rich acidic nu 40.9 21 0.00046 29.6 2.1 37 158-194 64-104 (260)
67 KOG2982 Uncharacterized conser 40.2 30 0.00066 29.8 3.0 61 128-194 69-134 (418)
68 PRK04841 transcriptional regul 35.5 26 0.00056 33.7 2.2 71 2-76 260-335 (903)
69 KOG0473 Leucine-rich repeat pr 35.5 4.7 0.0001 33.4 -2.4 45 119-170 77-122 (326)
70 KOG2986 Uncharacterized conser 34.8 32 0.00069 28.9 2.3 33 39-71 92-124 (313)
71 KOG4579 Leucine-rich repeat (L 31.7 7.9 0.00017 29.6 -1.6 58 131-195 54-114 (177)
72 KOG1909 Ran GTPase-activating 31.0 26 0.00056 30.6 1.2 72 121-194 176-254 (382)
73 KOG1644 U2-associated snRNP A' 30.0 66 0.0014 26.1 3.2 42 155-196 59-103 (233)
74 PF13730 HTH_36: Helix-turn-he 28.1 11 0.00023 22.8 -1.2 49 4-52 2-55 (55)
75 PF05725 FNIP: FNIP Repeat; I 26.3 1.4E+02 0.003 17.2 3.8 32 158-189 11-42 (44)
76 KOG0473 Leucine-rich repeat pr 24.2 3 6.4E-05 34.5 -5.3 67 124-197 59-127 (326)
77 PF15385 SARG: Specifically an 23.7 20 0.00044 32.6 -0.7 25 1-34 7-31 (497)
78 PF08281 Sigma70_r4_2: Sigma-7 23.2 16 0.00035 21.9 -1.0 28 3-32 9-36 (54)
No 1
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=1.3e-40 Score=321.31 Aligned_cols=197 Identities=40% Similarity=0.707 Sum_probs=183.2
Q ss_pred CCccCcc-cccceeceeecCCCCCCHHHHHHHHHHcCCcceechhhcccCCcceeecCeEEecHHHHHHHHHHhhhcccC
Q 046172 1 SFDDLDD-EEKNIFLDIVCFFKREDKDFIIKFLNACGFDAQIGISDLVNKSLIVIHNNQITMHDLLQEMGREVVKQESVN 79 (198)
Q Consensus 1 SYd~L~~-~~K~~FL~iAcf~~~~~~~~v~~~l~~~g~~~~~~i~~L~~~sLi~~~~~~i~MHdli~dmg~~i~~~es~~ 79 (198)
|||+|++ ++|.||++|||||+|.+.+.|..++.++|+.+..|++.|++||||+++.++++||||+|+||++|+++++ .
T Consensus 429 SYd~L~~~~~k~~Fl~ia~ff~~~~~~~v~~~l~~~~~~~~~~l~~L~~ksLi~~~~~~~~MHdLl~~~~r~i~~~~~-~ 507 (1153)
T PLN03210 429 SYDGLNNKKDKAIFRHIACLFNGEKVNDIKLLLANSDLDVNIGLKNLVDKSLIHVREDIVEMHSLLQEMGKEIVRAQS-N 507 (1153)
T ss_pred hhhccCccchhhhhheehhhcCCCCHHHHHHHHHhcCCCchhChHHHHhcCCEEEcCCeEEhhhHHHHHHHHHHHhhc-C
Confidence 8999986 6999999999999999999999999999999999999999999999998899999999999999999998 6
Q ss_pred CCCCceecccccceeeeecccccccceEEEEeeCCcccccccChhhhcCCccccEEEEecccccCCCccccccCCCCc--
Q 046172 80 NPGERSRLWHYEDIIEVLTFNTGTEKIEGICFDMSKVKQIGLNLDTFTKMHKLRFLKFYNSISEGKSKCMVSNCQGPI-- 157 (198)
Q Consensus 80 ~~~k~~rl~~~~d~~~~l~~~~~~~~v~~i~l~~~~~~~~~~~~~~f~~m~~Lr~L~l~~~~~~~~~~~~~~lp~~l~-- 157 (198)
+||+|+|+|+++|+++++++++|+.+|++|++|.++..++.++..+|.+|++|++|++++...........++|+++.
T Consensus 508 ~~~~r~~l~~~~di~~vl~~~~g~~~v~~i~l~~~~~~~~~i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~l 587 (1153)
T PLN03210 508 EPGEREFLVDAKDICDVLEDNTGTKKVLGITLDIDEIDELHIHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYL 587 (1153)
T ss_pred CCCcceeEeCHHHHHHHHHhCcccceeeEEEeccCccceeeecHHHHhcCccccEEEEecccccccccceeecCcchhhc
Confidence 899999999999999999999999999999999998888899999999999999999987543222334578999998
Q ss_pred cCCcceEEeCCCCCCCCCCCCCCCCceEEEcCCCCcccCCC
Q 046172 158 LAKVRYFHWDGYPLTSLPSNIYPDKLVFLEIPDSNIEQLWD 198 (198)
Q Consensus 158 l~~Lr~L~~~~~~l~~LP~~~~l~~L~~L~L~~S~i~~LW~ 198 (198)
+++||+|+|++||++++|+.|.+++|++|+|++|++++||+
T Consensus 588 p~~Lr~L~~~~~~l~~lP~~f~~~~L~~L~L~~s~l~~L~~ 628 (1153)
T PLN03210 588 PPKLRLLRWDKYPLRCMPSNFRPENLVKLQMQGSKLEKLWD 628 (1153)
T ss_pred CcccEEEEecCCCCCCCCCcCCccCCcEEECcCcccccccc
Confidence 78899999999999999999999999999999999999995
No 2
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.94 E-value=1.5e-27 Score=223.86 Aligned_cols=186 Identities=21% Similarity=0.316 Sum_probs=137.3
Q ss_pred CCccCcccccceeceeecCCCCCC--HHHHHHHHHHcCCc------------ceechhhcccCCcceeec-----CeEEe
Q 046172 1 SFDDLDDEEKNIFLDIVCFFKRED--KDFIIKFLNACGFD------------AQIGISDLVNKSLIVIHN-----NQITM 61 (198)
Q Consensus 1 SYd~L~~~~K~~FL~iAcf~~~~~--~~~v~~~l~~~g~~------------~~~~i~~L~~~sLi~~~~-----~~i~M 61 (198)
|||.|+++.|.||||||.||++++ ++.++.+|+|+||. +..+|.+|+++||+.... .+++|
T Consensus 404 Syd~L~~~lK~CFLycalFPED~~I~~e~Li~yWiaEGfi~~~~~~~~~~d~G~~~i~~LV~~~Ll~~~~~~~~~~~~km 483 (889)
T KOG4658|consen 404 SYDNLPEELKSCFLYCALFPEDYEIKKEKLIEYWIAEGFIDPLDGGETAEDVGYDYIEELVRASLLIEERDEGRKETVKM 483 (889)
T ss_pred cHhhhhHHHHHHHHhhccCCcccccchHHHHHHHHhccCcCccccccchhcchHHHHHHHHHHHHHhhcccccceeEEEe
Confidence 899999999999999999999976 68899999999975 234599999999998874 67999
Q ss_pred cHHHHHHHHHHhhhcccCC------CC-Cceecccccce-----eeeecc-------cccccceEEEEeeCCcccccccC
Q 046172 62 HDLLQEMGREVVKQESVNN------PG-ERSRLWHYEDI-----IEVLTF-------NTGTEKIEGICFDMSKVKQIGLN 122 (198)
Q Consensus 62 Hdli~dmg~~i~~~es~~~------~~-k~~rl~~~~d~-----~~~l~~-------~~~~~~v~~i~l~~~~~~~~~~~ 122 (198)
||+|||||.+|+.+.+.+. .+ .++..-..++. ...+.+ ......++.+.+......-..++
T Consensus 484 HDvvRe~al~ias~~~~~~e~~iv~~~~~~~~~~~~~~~~~~rr~s~~~~~~~~~~~~~~~~~L~tLll~~n~~~l~~is 563 (889)
T KOG4658|consen 484 HDVVREMALWIASDFGKQEENQIVSDGVGLSEIPQVKSWNSVRRMSLMNNKIEHIAGSSENPKLRTLLLQRNSDWLLEIS 563 (889)
T ss_pred eHHHHHHHHHHhccccccccceEEECCcCccccccccchhheeEEEEeccchhhccCCCCCCccceEEEeecchhhhhcC
Confidence 9999999999999433211 11 00000000000 001111 11122333433322210135678
Q ss_pred hhhhcCCccccEEEEecccccCCCccccccCCCCc-cCCcceEEeCCCCCCCCCCCC-CCCCceEEEcCCCC
Q 046172 123 LDTFTKMHKLRFLKFYNSISEGKSKCMVSNCQGPI-LAKVRYFHWDGYPLTSLPSNI-YPDKLVFLEIPDSN 192 (198)
Q Consensus 123 ~~~f~~m~~Lr~L~l~~~~~~~~~~~~~~lp~~l~-l~~Lr~L~~~~~~l~~LP~~~-~l~~L~~L~L~~S~ 192 (198)
..+|..|+.||+||++++. ....||.++. +-+||||++.++.++.||.++ ++++|.+||+..+.
T Consensus 564 ~~ff~~m~~LrVLDLs~~~------~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~ 629 (889)
T KOG4658|consen 564 GEFFRSLPLLRVLDLSGNS------SLSKLPSSIGELVHLRYLDLSDTGISHLPSGLGNLKKLIYLNLEVTG 629 (889)
T ss_pred HHHHhhCcceEEEECCCCC------ccCcCChHHhhhhhhhcccccCCCccccchHHHHHHhhheecccccc
Confidence 8899999999999999754 5679999999 999999999999999999999 79999999998754
No 3
>PF07725 LRR_3: Leucine Rich Repeat; InterPro: IPR011713 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This entry includes some LRRs that fail to be detected by the IPR001611 from INTERPRO model.
Probab=97.98 E-value=3.5e-06 Score=41.84 Aligned_cols=17 Identities=47% Similarity=0.946 Sum_probs=16.1
Q ss_pred CceEEEcCCCCcccCCC
Q 046172 182 KLVFLEIPDSNIEQLWD 198 (198)
Q Consensus 182 ~L~~L~L~~S~i~~LW~ 198 (198)
+||+|+|++|++++||+
T Consensus 1 ~LVeL~m~~S~lekLW~ 17 (20)
T PF07725_consen 1 NLVELNMPYSKLEKLWE 17 (20)
T ss_pred CcEEEECCCCChHHhcC
Confidence 69999999999999996
No 4
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=97.93 E-value=1.5e-05 Score=51.05 Aligned_cols=57 Identities=19% Similarity=0.304 Sum_probs=42.0
Q ss_pred ccccEEEEecccccCCCccccccCC-CCc-cCCcceEEeCCCCCCCCCCC-C-CCCCceEEEcCCCCc
Q 046172 130 HKLRFLKFYNSISEGKSKCMVSNCQ-GPI-LAKVRYFHWDGYPLTSLPSN-I-YPDKLVFLEIPDSNI 193 (198)
Q Consensus 130 ~~Lr~L~l~~~~~~~~~~~~~~lp~-~l~-l~~Lr~L~~~~~~l~~LP~~-~-~l~~L~~L~L~~S~i 193 (198)
++|+.|++.++. ...+|. .+. +++|++|++.++.++.+|+. | .+.+|++|++++++|
T Consensus 1 p~L~~L~l~~n~-------l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNK-------LTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSST-------ESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCC-------CCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 357788887652 456665 445 88888888888888888764 5 588888888888765
No 5
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.56 E-value=5e-05 Score=45.68 Aligned_cols=37 Identities=16% Similarity=0.309 Sum_probs=23.7
Q ss_pred CCcceEEeCCCCCCCCCCCC-CCCCceEEEcCCCCccc
Q 046172 159 AKVRYFHWDGYPLTSLPSNI-YPDKLVFLEIPDSNIEQ 195 (198)
Q Consensus 159 ~~Lr~L~~~~~~l~~LP~~~-~l~~L~~L~L~~S~i~~ 195 (198)
++|++|++.++.+.++|..+ ++.+|++|++++++|..
T Consensus 1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~ 38 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISD 38 (44)
T ss_dssp TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSB
T ss_pred CcceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCC
Confidence 35677777777777777645 57777777777776654
No 6
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=97.54 E-value=0.00032 Score=67.61 Aligned_cols=107 Identities=13% Similarity=0.181 Sum_probs=53.8
Q ss_pred CCCCCceecccccceeeeecccc--cccceEEEEeeCCcccccccChhhhcCCccccEEEEecccccCCCccccccCCCC
Q 046172 79 NNPGERSRLWHYEDIIEVLTFNT--GTEKIEGICFDMSKVKQIGLNLDTFTKMHKLRFLKFYNSISEGKSKCMVSNCQGP 156 (198)
Q Consensus 79 ~~~~k~~rl~~~~d~~~~l~~~~--~~~~v~~i~l~~~~~~~~~~~~~~f~~m~~Lr~L~l~~~~~~~~~~~~~~lp~~l 156 (198)
.+|+++.+.|+..+.+-.....+ ...+|..+.+.-... ....+.+|.++++|++|+++++.. ...+|.++
T Consensus 42 ~~~~~~~~~w~~~~~~c~w~gv~c~~~~~v~~L~L~~~~i--~~~~~~~~~~l~~L~~L~Ls~n~~------~~~ip~~~ 113 (968)
T PLN00113 42 NDPLKYLSNWNSSADVCLWQGITCNNSSRVVSIDLSGKNI--SGKISSAIFRLPYIQTINLSNNQL------SGPIPDDI 113 (968)
T ss_pred CCCcccCCCCCCCCCCCcCcceecCCCCcEEEEEecCCCc--cccCChHHhCCCCCCEEECCCCcc------CCcCChHH
Confidence 34666667786543222211111 123555555433221 112245677777777777766431 11344443
Q ss_pred c--cCCcceEEeCC----------------------CCCC-CCCCCC-CCCCceEEEcCCCCc
Q 046172 157 I--LAKVRYFHWDG----------------------YPLT-SLPSNI-YPDKLVFLEIPDSNI 193 (198)
Q Consensus 157 ~--l~~Lr~L~~~~----------------------~~l~-~LP~~~-~l~~L~~L~L~~S~i 193 (198)
. +++||+|++++ +.+. .+|..| .+.+|++|+|+++.+
T Consensus 114 ~~~l~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l 176 (968)
T PLN00113 114 FTTSSSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVL 176 (968)
T ss_pred hccCCCCCEEECcCCccccccCccccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcc
Confidence 2 45555555544 4433 455555 466666666666654
No 7
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=97.30 E-value=0.0004 Score=44.27 Aligned_cols=57 Identities=21% Similarity=0.303 Sum_probs=42.4
Q ss_pred eEEEEeeCCcccccccChhhhcCCccccEEEEecccccCCCccccccCC-CCc-cCCcceEEeCCCCC
Q 046172 106 IEGICFDMSKVKQIGLNLDTFTKMHKLRFLKFYNSISEGKSKCMVSNCQ-GPI-LAKVRYFHWDGYPL 171 (198)
Q Consensus 106 v~~i~l~~~~~~~~~~~~~~f~~m~~Lr~L~l~~~~~~~~~~~~~~lp~-~l~-l~~Lr~L~~~~~~l 171 (198)
++.+.+.-+. --.+++.+|.+|++|+.|++.+.. ...+|. .+. +++|++|+++++++
T Consensus 3 L~~L~l~~n~--l~~i~~~~f~~l~~L~~L~l~~N~-------l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 3 LESLDLSNNK--LTEIPPDSFSNLPNLETLDLSNNN-------LTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp ESEEEETSST--ESEECTTTTTTGTTESEEEETSSS-------ESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcEEECCCCC--CCccCHHHHcCCCCCCEeEccCCc-------cCccCHHHHcCCCCCCEEeCcCCcC
Confidence 4444444332 245788999999999999998763 456654 666 99999999999864
No 8
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=97.18 E-value=0.0008 Score=66.45 Aligned_cols=61 Identities=20% Similarity=0.215 Sum_probs=51.2
Q ss_pred hhcCCccccEEEEecccccCCCccccccCCCCc-cCCcceEEeCCCC-CCCCCCCCCCCCceEEEcCCC
Q 046172 125 TFTKMHKLRFLKFYNSISEGKSKCMVSNCQGPI-LAKVRYFHWDGYP-LTSLPSNIYPDKLVFLEIPDS 191 (198)
Q Consensus 125 ~f~~m~~Lr~L~l~~~~~~~~~~~~~~lp~~l~-l~~Lr~L~~~~~~-l~~LP~~~~l~~L~~L~L~~S 191 (198)
.++.+++|+.|++.++. ....+|.++. +++|+.|.+.+|+ +.++|..+++++|..|+|+++
T Consensus 652 ~ls~l~~Le~L~L~~c~------~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i~l~sL~~L~Lsgc 714 (1153)
T PLN03210 652 DLSMATNLETLKLSDCS------SLVELPSSIQYLNKLEDLDMSRCENLEILPTGINLKSLYRLNLSGC 714 (1153)
T ss_pred ccccCCcccEEEecCCC------CccccchhhhccCCCCEEeCCCCCCcCccCCcCCCCCCCEEeCCCC
Confidence 36677888888887764 4578899999 9999999999985 889999889999999999875
No 9
>PLN03150 hypothetical protein; Provisional
Probab=97.11 E-value=0.00079 Score=62.38 Aligned_cols=67 Identities=9% Similarity=0.134 Sum_probs=56.2
Q ss_pred ChhhhcCCccccEEEEecccccCCCccccccCCCCc-cCCcceEEeCCCCCC-CCCCCC-CCCCceEEEcCCCCcc
Q 046172 122 NLDTFTKMHKLRFLKFYNSISEGKSKCMVSNCQGPI-LAKVRYFHWDGYPLT-SLPSNI-YPDKLVFLEIPDSNIE 194 (198)
Q Consensus 122 ~~~~f~~m~~Lr~L~l~~~~~~~~~~~~~~lp~~l~-l~~Lr~L~~~~~~l~-~LP~~~-~l~~L~~L~L~~S~i~ 194 (198)
.+..|.++++|+.|++.++. -...+|..+. +++|+.|++.++.+. .+|..+ .+.+|++|+|+++++.
T Consensus 434 ip~~i~~L~~L~~L~Ls~N~------l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~ 503 (623)
T PLN03150 434 IPNDISKLRHLQSINLSGNS------IRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLS 503 (623)
T ss_pred CCHHHhCCCCCCEEECCCCc------ccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCccc
Confidence 35678999999999998763 1236888888 999999999999986 789888 6999999999998765
No 10
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.01 E-value=0.00037 Score=41.82 Aligned_cols=39 Identities=13% Similarity=0.208 Sum_probs=31.8
Q ss_pred ccccEEEEecccccCCCccccccCCCCc-cCCcceEEeCCCCCCCCC
Q 046172 130 HKLRFLKFYNSISEGKSKCMVSNCQGPI-LAKVRYFHWDGYPLTSLP 175 (198)
Q Consensus 130 ~~Lr~L~l~~~~~~~~~~~~~~lp~~l~-l~~Lr~L~~~~~~l~~LP 175 (198)
++|+.|++.+.. ...+|..+. +++|++|+++++++.++|
T Consensus 1 ~~L~~L~l~~N~-------i~~l~~~l~~l~~L~~L~l~~N~i~~i~ 40 (44)
T PF12799_consen 1 KNLEELDLSNNQ-------ITDLPPELSNLPNLETLNLSNNPISDIS 40 (44)
T ss_dssp TT-SEEEETSSS--------SSHGGHGTTCTTSSEEEETSSCCSBEG
T ss_pred CcceEEEccCCC-------CcccCchHhCCCCCCEEEecCCCCCCCc
Confidence 478999998863 557888888 999999999999999876
No 11
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=97.00 E-value=0.0009 Score=64.59 Aligned_cols=41 Identities=15% Similarity=0.126 Sum_probs=18.5
Q ss_pred cCCCCc-cCCcceEEeCCCCCC-CCCCCC-CCCCceEEEcCCCC
Q 046172 152 NCQGPI-LAKVRYFHWDGYPLT-SLPSNI-YPDKLVFLEIPDSN 192 (198)
Q Consensus 152 lp~~l~-l~~Lr~L~~~~~~l~-~LP~~~-~l~~L~~L~L~~S~ 192 (198)
+|.++. +++|+.|++.++.+. .+|..| .+.+|++|+|++++
T Consensus 204 ~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~ 247 (968)
T PLN00113 204 IPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNN 247 (968)
T ss_pred CChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCce
Confidence 344444 444444444444433 344444 34444444444443
No 12
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=96.63 E-value=0.00042 Score=54.25 Aligned_cols=65 Identities=18% Similarity=0.216 Sum_probs=45.2
Q ss_pred hhhhcCCccccEEEEecccccCCCccccccCCCCc-cCCcceEEeCCCCCCCCCCCC-CCCCceEEEcCCCCcc
Q 046172 123 LDTFTKMHKLRFLKFYNSISEGKSKCMVSNCQGPI-LAKVRYFHWDGYPLTSLPSNI-YPDKLVFLEIPDSNIE 194 (198)
Q Consensus 123 ~~~f~~m~~Lr~L~l~~~~~~~~~~~~~~lp~~l~-l~~Lr~L~~~~~~l~~LP~~~-~l~~L~~L~L~~S~i~ 194 (198)
+.-...+.||++|.+.+.. ...+|.++. +++||.|+..-..+..+|.+| ...-|++|||.++++.
T Consensus 49 ppnia~l~nlevln~~nnq-------ie~lp~~issl~klr~lnvgmnrl~~lprgfgs~p~levldltynnl~ 115 (264)
T KOG0617|consen 49 PPNIAELKNLEVLNLSNNQ-------IEELPTSISSLPKLRILNVGMNRLNILPRGFGSFPALEVLDLTYNNLN 115 (264)
T ss_pred CCcHHHhhhhhhhhcccch-------hhhcChhhhhchhhhheecchhhhhcCccccCCCchhhhhhccccccc
Confidence 4455677777777777653 456777777 777777777666677777777 4777777777776653
No 13
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=96.62 E-value=0.00043 Score=63.57 Aligned_cols=66 Identities=14% Similarity=0.296 Sum_probs=31.5
Q ss_pred cChhhhcCCccccEEEEecccccCCCccccccCCCCc-cCCcceEEeCCCCCCCCCCCC--CCCCceEEEcCCCCcc
Q 046172 121 LNLDTFTKMHKLRFLKFYNSISEGKSKCMVSNCQGPI-LAKVRYFHWDGYPLTSLPSNI--YPDKLVFLEIPDSNIE 194 (198)
Q Consensus 121 ~~~~~f~~m~~Lr~L~l~~~~~~~~~~~~~~lp~~l~-l~~Lr~L~~~~~~l~~LP~~~--~l~~L~~L~L~~S~i~ 194 (198)
++++.| +|..|.+|+++.. .....|.+++ -+++-.|+++++.+.++|... ++..|..|||++++++
T Consensus 95 iP~diF-~l~dLt~lDLShN-------qL~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe 163 (1255)
T KOG0444|consen 95 IPTDIF-RLKDLTILDLSHN-------QLREVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLE 163 (1255)
T ss_pred CCchhc-ccccceeeecchh-------hhhhcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhh
Confidence 444444 4555555555543 2334444444 444444555444444444432 4444444444444443
No 14
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=96.58 E-value=0.0011 Score=63.60 Aligned_cols=76 Identities=21% Similarity=0.301 Sum_probs=61.9
Q ss_pred EeeCCcccccccChhhhcCCccccEEEEecccccCCCccccccCCCCc-cCCcceEEeCCCC-CCCCCCCCC-CCCceEE
Q 046172 110 CFDMSKVKQIGLNLDTFTKMHKLRFLKFYNSISEGKSKCMVSNCQGPI-LAKVRYFHWDGYP-LTSLPSNIY-PDKLVFL 186 (198)
Q Consensus 110 ~l~~~~~~~~~~~~~~f~~m~~Lr~L~l~~~~~~~~~~~~~~lp~~l~-l~~Lr~L~~~~~~-l~~LP~~~~-l~~L~~L 186 (198)
.||++...+..--|+..+++-+||+|++++.. ..+||.++. ++.|.||+|+.+. +.++|.... +.+|++|
T Consensus 575 VLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~-------I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L 647 (889)
T KOG4658|consen 575 VLDLSGNSSLSKLPSSIGELVHLRYLDLSDTG-------ISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVL 647 (889)
T ss_pred EEECCCCCccCcCChHHhhhhhhhcccccCCC-------ccccchHHHHHHhhheeccccccccccccchhhhcccccEE
Confidence 46777544444457788999999999999874 569999999 9999999999875 566665555 9999999
Q ss_pred EcCCCC
Q 046172 187 EIPDSN 192 (198)
Q Consensus 187 ~L~~S~ 192 (198)
.|+.|.
T Consensus 648 ~l~~s~ 653 (889)
T KOG4658|consen 648 RLPRSA 653 (889)
T ss_pred Eeeccc
Confidence 999986
No 15
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=96.52 E-value=0.00058 Score=53.47 Aligned_cols=73 Identities=14% Similarity=0.156 Sum_probs=56.3
Q ss_pred ccccChhhhcCCccccEEEEecccccCCCccccccCCCCc-cCCcceEEeCCCCCCCCCCCC-CCCCceEEEcCCCCccc
Q 046172 118 QIGLNLDTFTKMHKLRFLKFYNSISEGKSKCMVSNCQGPI-LAKVRYFHWDGYPLTSLPSNI-YPDKLVFLEIPDSNIEQ 195 (198)
Q Consensus 118 ~~~~~~~~f~~m~~Lr~L~l~~~~~~~~~~~~~~lp~~l~-l~~Lr~L~~~~~~l~~LP~~~-~l~~L~~L~L~~S~i~~ 195 (198)
.+.+.+..|+.++-|.+|++....- +--.+|+.+. +..||-|.+....++-||..+ .+++|++|.++.+.+-.
T Consensus 90 rl~~lprgfgs~p~levldltynnl-----~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdndll~ 164 (264)
T KOG0617|consen 90 RLNILPRGFGSFPALEVLDLTYNNL-----NENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDNDLLS 164 (264)
T ss_pred hhhcCccccCCCchhhhhhcccccc-----ccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccCchhh
Confidence 4567788899999999999876421 2346788888 888888888888888888888 58888888888776543
No 16
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=96.30 E-value=0.00091 Score=61.50 Aligned_cols=48 Identities=17% Similarity=0.151 Sum_probs=43.6
Q ss_pred ccccCCCCc-cCCcceEEeCCCCCCCCCCCC-CCCCceEEEcCCCCcccC
Q 046172 149 MVSNCQGPI-LAKVRYFHWDGYPLTSLPSNI-YPDKLVFLEIPDSNIEQL 196 (198)
Q Consensus 149 ~~~lp~~l~-l~~Lr~L~~~~~~l~~LP~~~-~l~~L~~L~L~~S~i~~L 196 (198)
..++|.+++ +.+||-++++.+.+-.+|... .+.+|+-|||++++|+.|
T Consensus 211 l~N~Ptsld~l~NL~dvDlS~N~Lp~vPecly~l~~LrrLNLS~N~iteL 260 (1255)
T KOG0444|consen 211 LDNIPTSLDDLHNLRDVDLSENNLPIVPECLYKLRNLRRLNLSGNKITEL 260 (1255)
T ss_pred hhcCCCchhhhhhhhhccccccCCCcchHHHhhhhhhheeccCcCceeee
Confidence 467899999 999999999999999999886 799999999999999865
No 17
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=95.52 E-value=0.0081 Score=46.89 Aligned_cols=63 Identities=16% Similarity=0.201 Sum_probs=23.8
Q ss_pred hhcCCccccEEEEecccccCCCccccccCCCCc--cCCcceEEeCCCCCCCCCCC--C-CCCCceEEEcCCCCcc
Q 046172 125 TFTKMHKLRFLKFYNSISEGKSKCMVSNCQGPI--LAKVRYFHWDGYPLTSLPSN--I-YPDKLVFLEIPDSNIE 194 (198)
Q Consensus 125 ~f~~m~~Lr~L~l~~~~~~~~~~~~~~lp~~l~--l~~Lr~L~~~~~~l~~LP~~--~-~l~~L~~L~L~~S~i~ 194 (198)
.|..+.+|+.|++.+.. ...+++++. +++|+.|.+.++.+.++-.- . .+++|.+|+|.++-+.
T Consensus 59 ~l~~L~~L~~L~L~~N~-------I~~i~~~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~ 126 (175)
T PF14580_consen 59 GLPGLPRLKTLDLSNNR-------ISSISEGLDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVC 126 (175)
T ss_dssp T----TT--EEE--SS----------S-CHHHHHH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGG
T ss_pred CccChhhhhhcccCCCC-------CCccccchHHhCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCccc
Confidence 46667777777776642 344544443 67777777777766665432 1 4677777777776554
No 18
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=94.99 E-value=0.038 Score=52.47 Aligned_cols=37 Identities=19% Similarity=0.356 Sum_probs=25.0
Q ss_pred cCCcceEEeCCCCCCCCCCCCCCCCceEEEcCCCCccc
Q 046172 158 LAKVRYFHWDGYPLTSLPSNIYPDKLVFLEIPDSNIEQ 195 (198)
Q Consensus 158 l~~Lr~L~~~~~~l~~LP~~~~l~~L~~L~L~~S~i~~ 195 (198)
+.+|+.|+++++.+..+|..+. .+|+.|+|++++++.
T Consensus 261 ~s~L~~L~Ls~N~L~~LP~~l~-~sL~~L~Ls~N~Lt~ 297 (754)
T PRK15370 261 PSALQSLDLFHNKISCLPENLP-EELRYLSVYDNSIRT 297 (754)
T ss_pred hCCCCEEECcCCccCccccccC-CCCcEEECCCCcccc
Confidence 3467777777777777776653 477777777777654
No 19
>PLN03150 hypothetical protein; Provisional
Probab=94.72 E-value=0.047 Score=50.76 Aligned_cols=64 Identities=14% Similarity=0.123 Sum_probs=51.0
Q ss_pred ChhhhcCCccccEEEEecccccCCCccccccCCCCc-cCCcceEEeCCCCCC-CCCCCCC--CCCceEEEcCCC
Q 046172 122 NLDTFTKMHKLRFLKFYNSISEGKSKCMVSNCQGPI-LAKVRYFHWDGYPLT-SLPSNIY--PDKLVFLEIPDS 191 (198)
Q Consensus 122 ~~~~f~~m~~Lr~L~l~~~~~~~~~~~~~~lp~~l~-l~~Lr~L~~~~~~l~-~LP~~~~--l~~L~~L~L~~S 191 (198)
.+..|.+|++|+.|++.++.. ...+|..+. +++|++|++.++.+. .+|..+. +.++..+++.++
T Consensus 458 iP~~~~~l~~L~~LdLs~N~l------sg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N 525 (623)
T PLN03150 458 IPPSLGSITSLEVLDLSYNSF------NGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDN 525 (623)
T ss_pred CChHHhCCCCCCEEECCCCCC------CCCCchHHhcCCCCCEEECcCCcccccCChHHhhccccCceEEecCC
Confidence 345789999999999987641 236799999 999999999999876 8998873 456777877765
No 20
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=94.65 E-value=0.014 Score=54.76 Aligned_cols=62 Identities=16% Similarity=0.174 Sum_probs=46.9
Q ss_pred hhhcCCccccEEEEecccccCCCccccccCCCCc-cCCcceEEeCCCCCCCCC---CCCCCCCceEEEcCCCCc
Q 046172 124 DTFTKMHKLRFLKFYNSISEGKSKCMVSNCQGPI-LAKVRYFHWDGYPLTSLP---SNIYPDKLVFLEIPDSNI 193 (198)
Q Consensus 124 ~~f~~m~~Lr~L~l~~~~~~~~~~~~~~lp~~l~-l~~Lr~L~~~~~~l~~LP---~~~~l~~L~~L~L~~S~i 193 (198)
..+.+.+||+.||++++. ...+ .|+. +++|+.|.+.+-++.+-+ .-|++++|.+||+|+++-
T Consensus 167 ~lc~sFpNL~sLDIS~Tn-------I~nl-~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~ 232 (699)
T KOG3665|consen 167 QLCASFPNLRSLDISGTN-------ISNL-SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKN 232 (699)
T ss_pred HHhhccCccceeecCCCC-------ccCc-HHHhccccHHHHhccCCCCCchhhHHHHhcccCCCeeecccccc
Confidence 556788899999999873 2233 6777 999999998877766544 447899999999988753
No 21
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=94.46 E-value=0.081 Score=50.28 Aligned_cols=57 Identities=16% Similarity=0.166 Sum_probs=37.2
Q ss_pred ccccEEEEecccccCCCccccccCCCCccCCcceEEeCCCCCCCCCCCCCCCCceEEEcCCCCccc
Q 046172 130 HKLRFLKFYNSISEGKSKCMVSNCQGPILAKVRYFHWDGYPLTSLPSNIYPDKLVFLEIPDSNIEQ 195 (198)
Q Consensus 130 ~~Lr~L~l~~~~~~~~~~~~~~lp~~l~l~~Lr~L~~~~~~l~~LP~~~~l~~L~~L~L~~S~i~~ 195 (198)
.||+.|++.++. ...+|.++ +++|+.|.++++.+..+|..+ +.+|+.|+|++++|..
T Consensus 220 ~nL~~L~Ls~N~-------LtsLP~~l-~~~L~~L~Ls~N~L~~LP~~l-~s~L~~L~Ls~N~L~~ 276 (754)
T PRK15370 220 GNIKTLYANSNQ-------LTSIPATL-PDTIQEMELSINRITELPERL-PSALQSLDLFHNKISC 276 (754)
T ss_pred cCCCEEECCCCc-------cccCChhh-hccccEEECcCCccCcCChhH-hCCCCEEECcCCccCc
Confidence 367888877642 34455533 456777777777777777665 3567777777776654
No 22
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=94.27 E-value=0.043 Score=42.83 Aligned_cols=61 Identities=18% Similarity=0.287 Sum_probs=28.3
Q ss_pred CCccccEEEEecccccCCCccccccCCCCc-cCCcceEEeCCCCCCCCCCCC--CCCCceEEEcCCCCcccC
Q 046172 128 KMHKLRFLKFYNSISEGKSKCMVSNCQGPI-LAKVRYFHWDGYPLTSLPSNI--YPDKLVFLEIPDSNIEQL 196 (198)
Q Consensus 128 ~m~~Lr~L~l~~~~~~~~~~~~~~lp~~l~-l~~Lr~L~~~~~~l~~LP~~~--~l~~L~~L~L~~S~i~~L 196 (198)
.+.+|+.|+++++. ...++ ++. +++|+.|+++++.+.+++..+ .+.+|++|.|++++|..+
T Consensus 40 ~l~~L~~L~Ls~N~-------I~~l~-~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~L~~N~I~~l 103 (175)
T PF14580_consen 40 TLDKLEVLDLSNNQ-------ITKLE-GLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELYLSNNKISDL 103 (175)
T ss_dssp T-TT--EEE-TTS---------S--T-T----TT--EEE--SS---S-CHHHHHH-TT--EEE-TTS---SC
T ss_pred hhcCCCEEECCCCC-------Ccccc-CccChhhhhhcccCCCCCCccccchHHhCCcCCEEECcCCcCCCh
Confidence 46789999998863 34554 577 999999999999999998665 378999999999999754
No 23
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=94.26 E-value=0.016 Score=29.26 Aligned_cols=19 Identities=37% Similarity=0.711 Sum_probs=15.8
Q ss_pred CcceEEeCCCCCCCCCCCC
Q 046172 160 KVRYFHWDGYPLTSLPSNI 178 (198)
Q Consensus 160 ~Lr~L~~~~~~l~~LP~~~ 178 (198)
+|++|++++|.+..+|++|
T Consensus 1 ~L~~Ldls~n~l~~ip~~~ 19 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSSF 19 (22)
T ss_dssp TESEEEETSSEESEEGTTT
T ss_pred CccEEECCCCcCEeCChhh
Confidence 5788888888888888876
No 24
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=94.20 E-value=0.033 Score=26.35 Aligned_cols=16 Identities=38% Similarity=0.542 Sum_probs=8.4
Q ss_pred CcceEEeCCCCCCCCC
Q 046172 160 KVRYFHWDGYPLTSLP 175 (198)
Q Consensus 160 ~Lr~L~~~~~~l~~LP 175 (198)
+||.|++++|.+.+||
T Consensus 2 ~L~~L~l~~n~L~~lP 17 (17)
T PF13504_consen 2 NLRTLDLSNNRLTSLP 17 (17)
T ss_dssp T-SEEEETSS--SSE-
T ss_pred ccCEEECCCCCCCCCc
Confidence 5677777777777666
No 25
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=93.85 E-value=0.04 Score=48.48 Aligned_cols=46 Identities=20% Similarity=0.258 Sum_probs=26.5
Q ss_pred ChhhhcCCccccEEEEecccccCCCccccccCCCCc-cCCcceEEeCCCCCCCCC
Q 046172 122 NLDTFTKMHKLRFLKFYNSISEGKSKCMVSNCQGPI-LAKVRYFHWDGYPLTSLP 175 (198)
Q Consensus 122 ~~~~f~~m~~Lr~L~l~~~~~~~~~~~~~~lp~~l~-l~~Lr~L~~~~~~l~~LP 175 (198)
+++-..+|.||.+|++.+. ....+|..++ +.+||.|.++|.|++ .|
T Consensus 497 d~~~l~nm~nL~tLDL~nN-------dlq~IPp~LgnmtnL~hLeL~gNpfr-~P 543 (565)
T KOG0472|consen 497 DPSGLKNMRNLTTLDLQNN-------DLQQIPPILGNMTNLRHLELDGNPFR-QP 543 (565)
T ss_pred ChHHhhhhhhcceeccCCC-------chhhCChhhccccceeEEEecCCccC-CC
Confidence 3444556666666666544 2455566666 666666666666655 44
No 26
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=92.97 E-value=0.047 Score=48.06 Aligned_cols=67 Identities=15% Similarity=0.253 Sum_probs=51.0
Q ss_pred cChhhhcCCccccEEEEecccccCCCccccccCCCCc-cCCcceEEeCCCCCCCCCCCC-CCCCceEEEcCCCCccc
Q 046172 121 LNLDTFTKMHKLRFLKFYNSISEGKSKCMVSNCQGPI-LAKVRYFHWDGYPLTSLPSNI-YPDKLVFLEIPDSNIEQ 195 (198)
Q Consensus 121 ~~~~~f~~m~~Lr~L~l~~~~~~~~~~~~~~lp~~l~-l~~Lr~L~~~~~~l~~LP~~~-~l~~L~~L~L~~S~i~~ 195 (198)
++++..+++..|.+||+... ....+|.++. +.+|.+|++++..+.+||-+. ++ .|..|-+.++-++.
T Consensus 243 lpae~~~~L~~l~vLDLRdN-------klke~Pde~clLrsL~rLDlSNN~is~Lp~sLgnl-hL~~L~leGNPlrT 311 (565)
T KOG0472|consen 243 LPAEHLKHLNSLLVLDLRDN-------KLKEVPDEICLLRSLERLDLSNNDISSLPYSLGNL-HLKFLALEGNPLRT 311 (565)
T ss_pred hHHHHhcccccceeeecccc-------ccccCchHHHHhhhhhhhcccCCccccCCcccccc-eeeehhhcCCchHH
Confidence 45566667788888888664 3677888888 888888888888888888877 46 77777777776654
No 27
>PRK15386 type III secretion protein GogB; Provisional
Probab=92.67 E-value=0.14 Score=45.24 Aligned_cols=40 Identities=10% Similarity=0.037 Sum_probs=27.1
Q ss_pred cccEEEEecccccCCCccccccCCCCccCCcceEEeCCC-CCCCCCCC
Q 046172 131 KLRFLKFYNSISEGKSKCMVSNCQGPILAKVRYFHWDGY-PLTSLPSN 177 (198)
Q Consensus 131 ~Lr~L~l~~~~~~~~~~~~~~lp~~l~l~~Lr~L~~~~~-~l~~LP~~ 177 (198)
+|+.|.+.++. ....+|+.+ +.+|++|.+.+| .+.+||++
T Consensus 73 sLtsL~Lsnc~------nLtsLP~~L-P~nLe~L~Ls~Cs~L~sLP~s 113 (426)
T PRK15386 73 ELTEITIENCN------NLTTLPGSI-PEGLEKLTVCHCPEISGLPES 113 (426)
T ss_pred CCcEEEccCCC------CcccCCchh-hhhhhheEccCcccccccccc
Confidence 58888887653 244556433 678888888888 57777754
No 28
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=92.63 E-value=0.069 Score=49.08 Aligned_cols=21 Identities=24% Similarity=0.385 Sum_probs=13.1
Q ss_pred ccChhhhcCCccccEEEEecc
Q 046172 120 GLNLDTFTKMHKLRFLKFYNS 140 (198)
Q Consensus 120 ~~~~~~f~~m~~Lr~L~l~~~ 140 (198)
.++..+|++++.|+.|++...
T Consensus 211 tLp~r~Fk~L~~L~~LdLnrN 231 (873)
T KOG4194|consen 211 TLPQRSFKRLPKLESLDLNRN 231 (873)
T ss_pred ccCHHHhhhcchhhhhhcccc
Confidence 455666666666666666543
No 29
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=92.28 E-value=0.051 Score=46.26 Aligned_cols=59 Identities=10% Similarity=0.102 Sum_probs=46.8
Q ss_pred cccEEEEecccccCCCccccccCCCCc-cCCcceEEeCCCCCCCCCCCCCCCCceEEEcCCCCcccC
Q 046172 131 KLRFLKFYNSISEGKSKCMVSNCQGPI-LAKVRYFHWDGYPLTSLPSNIYPDKLVFLEIPDSNIEQL 196 (198)
Q Consensus 131 ~Lr~L~l~~~~~~~~~~~~~~lp~~l~-l~~Lr~L~~~~~~l~~LP~~~~l~~L~~L~L~~S~i~~L 196 (198)
.|..||+++. ...++.+++. .+.+|.|.++.+.+...-+--.+.+|++|||+++.+.++
T Consensus 285 ~LtelDLS~N-------~I~~iDESvKL~Pkir~L~lS~N~i~~v~nLa~L~~L~~LDLS~N~Ls~~ 344 (490)
T KOG1259|consen 285 ELTELDLSGN-------LITQIDESVKLAPKLRRLILSQNRIRTVQNLAELPQLQLLDLSGNLLAEC 344 (490)
T ss_pred hhhhcccccc-------chhhhhhhhhhccceeEEeccccceeeehhhhhcccceEeecccchhHhh
Confidence 4777777765 3567888999 999999999988877666533688999999999988654
No 30
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=92.27 E-value=0.046 Score=47.38 Aligned_cols=59 Identities=19% Similarity=0.214 Sum_probs=44.5
Q ss_pred cccEEEEecccccCCCccccccCCCCc-cCCcceEEeCCCCCCCCCCCC-CCCCceEEEcCCCCcccC
Q 046172 131 KLRFLKFYNSISEGKSKCMVSNCQGPI-LAKVRYFHWDGYPLTSLPSNI-YPDKLVFLEIPDSNIEQL 196 (198)
Q Consensus 131 ~Lr~L~l~~~~~~~~~~~~~~lp~~l~-l~~Lr~L~~~~~~l~~LP~~~-~l~~L~~L~L~~S~i~~L 196 (198)
+|+.|++.+.. ...+|..++ +++|..|.+..+++.++|... .+.+|..|+++++++..+
T Consensus 141 nL~~L~l~~N~-------i~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~L~ls~N~i~~l 201 (394)
T COG4886 141 NLKELDLSDNK-------IESLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLDLSGNKISDL 201 (394)
T ss_pred hcccccccccc-------hhhhhhhhhccccccccccCCchhhhhhhhhhhhhhhhheeccCCccccC
Confidence 77777776652 456667777 888888888888888888777 788888888888877653
No 31
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=92.24 E-value=0.024 Score=54.21 Aligned_cols=71 Identities=15% Similarity=0.257 Sum_probs=38.9
Q ss_pred ccChhhhcCCccccEEEEecccc----------------cCCCccccccCCCCc-cCCcceEEeCCCCCCC--CCCCCCC
Q 046172 120 GLNLDTFTKMHKLRFLKFYNSIS----------------EGKSKCMVSNCQGPI-LAKVRYFHWDGYPLTS--LPSNIYP 180 (198)
Q Consensus 120 ~~~~~~f~~m~~Lr~L~l~~~~~----------------~~~~~~~~~lp~~l~-l~~Lr~L~~~~~~l~~--LP~~~~l 180 (198)
.+++.++.++..|+.|.++|..- .+.+....++| .+- ++.|+.++++.+.++. +|....-
T Consensus 397 ~fpas~~~kle~LeeL~LSGNkL~~Lp~tva~~~~L~tL~ahsN~l~~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~ 475 (1081)
T KOG0618|consen 397 SFPASKLRKLEELEELNLSGNKLTTLPDTVANLGRLHTLRAHSNQLLSFP-ELAQLPQLKVLDLSCNNLSEVTLPEALPS 475 (1081)
T ss_pred cCCHHHHhchHHhHHHhcccchhhhhhHHHHhhhhhHHHhhcCCceeech-hhhhcCcceEEecccchhhhhhhhhhCCC
Confidence 36777777777777777776421 01122345556 333 6666666666555542 3333322
Q ss_pred CCceEEEcCCC
Q 046172 181 DKLVFLEIPDS 191 (198)
Q Consensus 181 ~~L~~L~L~~S 191 (198)
.+|++|||+++
T Consensus 476 p~LkyLdlSGN 486 (1081)
T KOG0618|consen 476 PNLKYLDLSGN 486 (1081)
T ss_pred cccceeeccCC
Confidence 56666666665
No 32
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=92.06 E-value=0.052 Score=51.97 Aligned_cols=63 Identities=21% Similarity=0.318 Sum_probs=45.4
Q ss_pred hhcCCccccEEEEecccccCCCccccccCCCCc-cCCcceEEeCCCCCCCCCCCC-CCCCceEEEcCCCCcc
Q 046172 125 TFTKMHKLRFLKFYNSISEGKSKCMVSNCQGPI-LAKVRYFHWDGYPLTSLPSNI-YPDKLVFLEIPDSNIE 194 (198)
Q Consensus 125 ~f~~m~~Lr~L~l~~~~~~~~~~~~~~lp~~l~-l~~Lr~L~~~~~~l~~LP~~~-~l~~L~~L~L~~S~i~ 194 (198)
.......|+.|.+.... +..+|.++. +.+|.+|.+.++.+.++|.++ ++++|+.|+++.++..
T Consensus 63 ~it~l~~L~~ln~s~n~-------i~~vp~s~~~~~~l~~lnL~~n~l~~lP~~~~~lknl~~LdlS~N~f~ 127 (1081)
T KOG0618|consen 63 QITLLSHLRQLNLSRNY-------IRSVPSSCSNMRNLQYLNLKNNRLQSLPASISELKNLQYLDLSFNHFG 127 (1081)
T ss_pred hhhhHHHHhhcccchhh-------HhhCchhhhhhhcchhheeccchhhcCchhHHhhhcccccccchhccC
Confidence 34445556666665442 456777777 888888888888888888888 6888888888887654
No 33
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=92.05 E-value=0.022 Score=49.77 Aligned_cols=87 Identities=15% Similarity=0.251 Sum_probs=56.2
Q ss_pred EEEEeeCCcccccccChhhhcCCccccEEEEecccccC-----------------CC-ccccccCCCCc--cCCcceEEe
Q 046172 107 EGICFDMSKVKQIGLNLDTFTKMHKLRFLKFYNSISEG-----------------KS-KCMVSNCQGPI--LAKVRYFHW 166 (198)
Q Consensus 107 ~~i~l~~~~~~~~~~~~~~f~~m~~Lr~L~l~~~~~~~-----------------~~-~~~~~lp~~l~--l~~Lr~L~~ 166 (198)
-.|.||...+ -.+++.+|+.+++||.|++++..++. .+ +.+..+|++.. +..|+.|.+
T Consensus 70 veirLdqN~I--~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLll 147 (498)
T KOG4237|consen 70 VEIRLDQNQI--SSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLL 147 (498)
T ss_pred eEEEeccCCc--ccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhc
Confidence 3456666654 46889999999999999998765421 11 23445666554 666666666
Q ss_pred CCCCCCCCCCC-C-CCCCceEEEcCCCCccc
Q 046172 167 DGYPLTSLPSN-I-YPDKLVFLEIPDSNIEQ 195 (198)
Q Consensus 167 ~~~~l~~LP~~-~-~l~~L~~L~L~~S~i~~ 195 (198)
..+.+.+++.. | .+++|..|.|..++++.
T Consensus 148 Nan~i~Cir~~al~dL~~l~lLslyDn~~q~ 178 (498)
T KOG4237|consen 148 NANHINCIRQDALRDLPSLSLLSLYDNKIQS 178 (498)
T ss_pred ChhhhcchhHHHHHHhhhcchhcccchhhhh
Confidence 66666665544 3 46677777776666543
No 34
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=91.84 E-value=0.047 Score=47.79 Aligned_cols=68 Identities=19% Similarity=0.080 Sum_probs=39.8
Q ss_pred ccChhhhcCCccccEEEEecccccCCCcccccc-CCCCc-cCCcceEEeCCCCCCCCCCC-C-CCCCceEEEcCCCCcc
Q 046172 120 GLNLDTFTKMHKLRFLKFYNSISEGKSKCMVSN-CQGPI-LAKVRYFHWDGYPLTSLPSN-I-YPDKLVFLEIPDSNIE 194 (198)
Q Consensus 120 ~~~~~~f~~m~~Lr~L~l~~~~~~~~~~~~~~l-p~~l~-l~~Lr~L~~~~~~l~~LP~~-~-~l~~L~~L~L~~S~i~ 194 (198)
.-+...|+++.+||.|++.+... ..+ ++.++ ..+|+-|++.++.++.+-+. | .+..|..|+|.+++|+
T Consensus 264 ~cP~~cf~~L~~L~~lnlsnN~i-------~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it 335 (498)
T KOG4237|consen 264 ICPAKCFKKLPNLRKLNLSNNKI-------TRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQIT 335 (498)
T ss_pred cChHHHHhhcccceEeccCCCcc-------chhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeE
Confidence 44678899999999999988643 111 33444 55555555555555444433 2 3555555555555544
No 35
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=91.62 E-value=0.39 Score=45.86 Aligned_cols=24 Identities=13% Similarity=0.014 Sum_probs=16.6
Q ss_pred cccceeceeecCCCCCCHHHHHHH
Q 046172 8 EEKNIFLDIVCFFKREDKDFIIKF 31 (198)
Q Consensus 8 ~~K~~FL~iAcf~~~~~~~~v~~~ 31 (198)
+.++|--++..-+.|...+.|...
T Consensus 48 ~a~~c~~~~~~~~~~~~~~~~~~~ 71 (788)
T PRK15387 48 EALECIWTICHPPAGTTREDVINR 71 (788)
T ss_pred HHHHHHHHHhCCCCCCCHHHHHHH
Confidence 557777788888888776655443
No 36
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=91.11 E-value=0.1 Score=47.98 Aligned_cols=21 Identities=19% Similarity=0.331 Sum_probs=14.4
Q ss_pred ccChhhhcCCccccEEEEecc
Q 046172 120 GLNLDTFTKMHKLRFLKFYNS 140 (198)
Q Consensus 120 ~~~~~~f~~m~~Lr~L~l~~~ 140 (198)
.+.+-+|-.|.+++.|++...
T Consensus 259 kL~DG~Fy~l~kme~l~L~~N 279 (873)
T KOG4194|consen 259 KLDDGAFYGLEKMEHLNLETN 279 (873)
T ss_pred cccCcceeeecccceeecccc
Confidence 455667777777777777653
No 37
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=90.83 E-value=0.17 Score=41.76 Aligned_cols=66 Identities=18% Similarity=0.281 Sum_probs=48.3
Q ss_pred hhhhcCCccccEEEEecccccCCCccccccCCCC----c-cCCcceEEeCCCCCC---CCCCCCCCCCceEEEcCCCCcc
Q 046172 123 LDTFTKMHKLRFLKFYNSISEGKSKCMVSNCQGP----I-LAKVRYFHWDGYPLT---SLPSNIYPDKLVFLEIPDSNIE 194 (198)
Q Consensus 123 ~~~f~~m~~Lr~L~l~~~~~~~~~~~~~~lp~~l----~-l~~Lr~L~~~~~~l~---~LP~~~~l~~L~~L~L~~S~i~ 194 (198)
..-|-.|++|+.|.++... .+...++ . .++|++|.++++.++ ++++-=.++||..|++..+...
T Consensus 58 ~~~~P~Lp~LkkL~lsdn~--------~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~~~ 129 (260)
T KOG2739|consen 58 LTNFPKLPKLKKLELSDNY--------RRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNCSVT 129 (260)
T ss_pred cccCCCcchhhhhcccCCc--------ccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhhhhcccCCcc
Confidence 4556778899999997642 2333333 3 799999999998765 4554446889999999999876
Q ss_pred cC
Q 046172 195 QL 196 (198)
Q Consensus 195 ~L 196 (198)
++
T Consensus 130 ~l 131 (260)
T KOG2739|consen 130 NL 131 (260)
T ss_pred cc
Confidence 64
No 38
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=89.61 E-value=0.4 Score=45.79 Aligned_cols=36 Identities=31% Similarity=0.363 Sum_probs=24.2
Q ss_pred CCcceEEeCCCCCCCCCCCCCCCCceEEEcCCCCcccC
Q 046172 159 AKVRYFHWDGYPLTSLPSNIYPDKLVFLEIPDSNIEQL 196 (198)
Q Consensus 159 ~~Lr~L~~~~~~l~~LP~~~~l~~L~~L~L~~S~i~~L 196 (198)
.+|+.|.+.++.+..+|.. +.+|+.|+|++++++.+
T Consensus 282 ~~L~~L~Ls~N~Lt~LP~~--p~~L~~LdLS~N~L~~L 317 (788)
T PRK15387 282 SGLCKLWIFGNQLTSLPVL--PPGLQELSVSDNQLASL 317 (788)
T ss_pred hhcCEEECcCCcccccccc--ccccceeECCCCccccC
Confidence 4566666666666666652 46788888888777653
No 39
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=89.33 E-value=0.12 Score=43.01 Aligned_cols=37 Identities=22% Similarity=0.257 Sum_probs=19.7
Q ss_pred cCCcceEEeCCCCCCC-----CCCCC--CCCCceEEEcCCCCcc
Q 046172 158 LAKVRYFHWDGYPLTS-----LPSNI--YPDKLVFLEIPDSNIE 194 (198)
Q Consensus 158 l~~Lr~L~~~~~~l~~-----LP~~~--~l~~L~~L~L~~S~i~ 194 (198)
.++|++|++.++++.. +...+ ....|+.|+++++.+.
T Consensus 220 ~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~ 263 (319)
T cd00116 220 LKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDIT 263 (319)
T ss_pred cCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCC
Confidence 5566666666666542 11111 1356666666666553
No 40
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=89.06 E-value=0.07 Score=40.47 Aligned_cols=68 Identities=18% Similarity=0.134 Sum_probs=55.1
Q ss_pred ccChhhhcCCccccEEEEecccccCCCccccccCCCCc-cCCcceEEeCCCCCCCCCCCC-CCCCceEEEcCCCCcc
Q 046172 120 GLNLDTFTKMHKLRFLKFYNSISEGKSKCMVSNCQGPI-LAKVRYFHWDGYPLTSLPSNI-YPDKLVFLEIPDSNIE 194 (198)
Q Consensus 120 ~~~~~~f~~m~~Lr~L~l~~~~~~~~~~~~~~lp~~l~-l~~Lr~L~~~~~~l~~LP~~~-~l~~L~~L~L~~S~i~ 194 (198)
.+++.+-.+.+-+.+|.+.+. ....+|..+- ++.||-|++..+|+..+|.-| .+++|-.|+.+++.+.
T Consensus 67 ~fp~kft~kf~t~t~lNl~~n-------eisdvPeE~Aam~aLr~lNl~~N~l~~~p~vi~~L~~l~~Lds~~na~~ 136 (177)
T KOG4579|consen 67 KFPKKFTIKFPTATTLNLANN-------EISDVPEELAAMPALRSLNLRFNPLNAEPRVIAPLIKLDMLDSPENARA 136 (177)
T ss_pred hCCHHHhhccchhhhhhcchh-------hhhhchHHHhhhHHhhhcccccCccccchHHHHHHHhHHHhcCCCCccc
Confidence 455666666667778888765 3678999988 999999999999999999888 7999999998887654
No 41
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=88.88 E-value=0.14 Score=48.36 Aligned_cols=70 Identities=20% Similarity=0.157 Sum_probs=52.9
Q ss_pred ccChhhhcCCccccEEEEecccccCCCccccccCCCCc-cCCcceEEeCCCCCCCCCCCC-CCCCceEEEcCCCCccc
Q 046172 120 GLNLDTFTKMHKLRFLKFYNSISEGKSKCMVSNCQGPI-LAKVRYFHWDGYPLTSLPSNI-YPDKLVFLEIPDSNIEQ 195 (198)
Q Consensus 120 ~~~~~~f~~m~~Lr~L~l~~~~~~~~~~~~~~lp~~l~-l~~Lr~L~~~~~~l~~LP~~~-~l~~L~~L~L~~S~i~~ 195 (198)
.|+......++.||.|.+.|.... ...+.+-.. .++|+.|+.++++++.| +++ +++||++|-|++-.++.
T Consensus 138 ~W~~kig~~LPsL~sL~i~~~~~~-----~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~L~mrnLe~e~ 209 (699)
T KOG3665|consen 138 GWPKKIGTMLPSLRSLVISGRQFD-----NDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQVLSMRNLEFES 209 (699)
T ss_pred cHHHHHhhhCcccceEEecCceec-----chhHHHHhhccCccceeecCCCCccCc-HHHhccccHHHHhccCCCCCc
Confidence 466677778899999999875321 111222233 89999999999999999 666 79999999999877753
No 42
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=87.79 E-value=0.07 Score=48.74 Aligned_cols=58 Identities=24% Similarity=0.276 Sum_probs=39.7
Q ss_pred ccEEEEecccccCCCccccccCCCCc-cCCcceEEeCCCCCCCCCCCC-CCCCceEEEcCCCCcccC
Q 046172 132 LRFLKFYNSISEGKSKCMVSNCQGPI-LAKVRYFHWDGYPLTSLPSNI-YPDKLVFLEIPDSNIEQL 196 (198)
Q Consensus 132 Lr~L~l~~~~~~~~~~~~~~lp~~l~-l~~Lr~L~~~~~~l~~LP~~~-~l~~L~~L~L~~S~i~~L 196 (198)
|++|.+.+. .+..+|.+++ ...|.-|+...|.+.++|+.. .+..|..|+++++++.+|
T Consensus 145 Lkvli~sNN-------kl~~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn~l~~l 204 (722)
T KOG0532|consen 145 LKVLIVSNN-------KLTSLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRNHLEDL 204 (722)
T ss_pred ceeEEEecC-------ccccCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhhhhhhC
Confidence 566666654 3567777777 777777777777777777766 477776666666665543
No 43
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=87.29 E-value=0.4 Score=24.77 Aligned_cols=21 Identities=29% Similarity=0.464 Sum_probs=16.7
Q ss_pred cCCcceEEeCCCCCCCCCCCC
Q 046172 158 LAKVRYFHWDGYPLTSLPSNI 178 (198)
Q Consensus 158 l~~Lr~L~~~~~~l~~LP~~~ 178 (198)
+++|++|++.++.++++|...
T Consensus 1 L~~L~~L~L~~N~l~~lp~~~ 21 (26)
T smart00370 1 LPNLRELDLSNNQLSSLPPGA 21 (26)
T ss_pred CCCCCEEECCCCcCCcCCHHH
Confidence 467888888888888888653
No 44
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=87.29 E-value=0.4 Score=24.77 Aligned_cols=21 Identities=29% Similarity=0.464 Sum_probs=16.7
Q ss_pred cCCcceEEeCCCCCCCCCCCC
Q 046172 158 LAKVRYFHWDGYPLTSLPSNI 178 (198)
Q Consensus 158 l~~Lr~L~~~~~~l~~LP~~~ 178 (198)
+++|++|++.++.++++|...
T Consensus 1 L~~L~~L~L~~N~l~~lp~~~ 21 (26)
T smart00369 1 LPNLRELDLSNNQLSSLPPGA 21 (26)
T ss_pred CCCCCEEECCCCcCCcCCHHH
Confidence 467888888888888888653
No 45
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=86.77 E-value=0.18 Score=41.83 Aligned_cols=70 Identities=16% Similarity=0.163 Sum_probs=45.8
Q ss_pred hhhhcCCcc---ccEEEEecccccCCCccccccCCCCc-c-CCcceEEeCCCCCC-----CCCCCC-CCCCceEEEcCCC
Q 046172 123 LDTFTKMHK---LRFLKFYNSISEGKSKCMVSNCQGPI-L-AKVRYFHWDGYPLT-----SLPSNI-YPDKLVFLEIPDS 191 (198)
Q Consensus 123 ~~~f~~m~~---Lr~L~l~~~~~~~~~~~~~~lp~~l~-l-~~Lr~L~~~~~~l~-----~LP~~~-~l~~L~~L~L~~S 191 (198)
..+|..+.+ |+.|++.++.... .....+...+. + ++|+.|++.+|.+. .++..+ ...+|++|+|+++
T Consensus 98 ~~~~~~l~~~~~L~~L~ls~~~~~~--~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n 175 (319)
T cd00116 98 CGVLESLLRSSSLQELKLNNNGLGD--RGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANN 175 (319)
T ss_pred HHHHHHHhccCcccEEEeeCCccch--HHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCC
Confidence 344545544 9999998764211 01122344555 4 89999999999876 344455 4678999999998
Q ss_pred Ccc
Q 046172 192 NIE 194 (198)
Q Consensus 192 ~i~ 194 (198)
.+.
T Consensus 176 ~l~ 178 (319)
T cd00116 176 GIG 178 (319)
T ss_pred CCc
Confidence 775
No 46
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=85.99 E-value=0.52 Score=40.20 Aligned_cols=69 Identities=22% Similarity=0.177 Sum_probs=43.2
Q ss_pred hhhhcCCccccEEEEecccccCCCccccccCCCCccCCcceEEeCCCCC--CCCCCCC-CCCCceEEEcCCCCcccC
Q 046172 123 LDTFTKMHKLRFLKFYNSISEGKSKCMVSNCQGPILAKVRYFHWDGYPL--TSLPSNI-YPDKLVFLEIPDSNIEQL 196 (198)
Q Consensus 123 ~~~f~~m~~Lr~L~l~~~~~~~~~~~~~~lp~~l~l~~Lr~L~~~~~~l--~~LP~~~-~l~~L~~L~L~~S~i~~L 196 (198)
+...++|+.|++|.++...- +....++| +..++||.|-+.|+.+ ...-+.. .+.++++|.|+.++++++
T Consensus 90 ~~ile~lP~l~~LNls~N~L---~s~I~~lp--~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~ 161 (418)
T KOG2982|consen 90 GAILEQLPALTTLNLSCNSL---SSDIKSLP--LPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQL 161 (418)
T ss_pred HHHHhcCccceEeeccCCcC---CCccccCc--ccccceEEEEEcCCCCChhhhhhhhhcchhhhhhhhccchhhhh
Confidence 46678999999999975421 11123344 2267999999988743 4444444 466667777777665543
No 47
>PRK15386 type III secretion protein GogB; Provisional
Probab=85.21 E-value=1.1 Score=39.88 Aligned_cols=37 Identities=16% Similarity=0.220 Sum_probs=20.5
Q ss_pred ccccEEEEecccccCCCccccccCCCCccCCcceEEeCCCC---CCCCCCC
Q 046172 130 HKLRFLKFYNSISEGKSKCMVSNCQGPILAKVRYFHWDGYP---LTSLPSN 177 (198)
Q Consensus 130 ~~Lr~L~l~~~~~~~~~~~~~~lp~~l~l~~Lr~L~~~~~~---l~~LP~~ 177 (198)
.+|+.|++.+|. ....+|. +|..|.+.++. +.+||++
T Consensus 94 ~nLe~L~Ls~Cs------~L~sLP~-----sLe~L~L~~n~~~~L~~LPss 133 (426)
T PRK15386 94 EGLEKLTVCHCP------EISGLPE-----SVRSLEIKGSATDSIKNVPNG 133 (426)
T ss_pred hhhhheEccCcc------ccccccc-----ccceEEeCCCCCcccccCcch
Confidence 478888887653 1233444 45555555433 5566654
No 48
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=85.19 E-value=0.53 Score=41.35 Aligned_cols=62 Identities=13% Similarity=0.216 Sum_probs=43.8
Q ss_pred hcCCccccEEEEecccccCCCccccccCCCCc-cCCcceEEeCCCCCCCCCCCCCCCCceEEEcCCCCccc
Q 046172 126 FTKMHKLRFLKFYNSISEGKSKCMVSNCQGPI-LAKVRYFHWDGYPLTSLPSNIYPDKLVFLEIPDSNIEQ 195 (198)
Q Consensus 126 f~~m~~Lr~L~l~~~~~~~~~~~~~~lp~~l~-l~~Lr~L~~~~~~l~~LP~~~~l~~L~~L~L~~S~i~~ 195 (198)
+..|.+|++|++.+.. ...+ .++. +..|+.|++.++++..++.--.+.+|..|++.++.+..
T Consensus 114 l~~~~~L~~L~ls~N~-------I~~i-~~l~~l~~L~~L~l~~N~i~~~~~~~~l~~L~~l~l~~n~i~~ 176 (414)
T KOG0531|consen 114 LSSLVNLQVLDLSFNK-------ITKL-EGLSTLTLLKELNLSGNLISDISGLESLKSLKLLDLSYNRIVD 176 (414)
T ss_pred hhhhhcchheeccccc-------cccc-cchhhccchhhheeccCcchhccCCccchhhhcccCCcchhhh
Confidence 6678888888887642 1222 2444 66788888888888887754458888888888877653
No 49
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=84.59 E-value=0.56 Score=40.58 Aligned_cols=64 Identities=17% Similarity=0.191 Sum_probs=52.5
Q ss_pred hcCCccccEEEEecccccCCCccccccCCCCc-cC-CcceEEeCCCCCCCCCCCC-CCCCceEEEcCCCCcccC
Q 046172 126 FTKMHKLRFLKFYNSISEGKSKCMVSNCQGPI-LA-KVRYFHWDGYPLTSLPSNI-YPDKLVFLEIPDSNIEQL 196 (198)
Q Consensus 126 f~~m~~Lr~L~l~~~~~~~~~~~~~~lp~~l~-l~-~Lr~L~~~~~~l~~LP~~~-~l~~L~~L~L~~S~i~~L 196 (198)
.....++..|.+.+.. ...+|.... +. +|+.|+.....++.+|..+ .+.+|+.|++..+++..+
T Consensus 112 ~~~~~~l~~L~l~~n~-------i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~~l 178 (394)
T COG4886 112 LLELTNLTSLDLDNNN-------ITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSDL 178 (394)
T ss_pred hhcccceeEEecCCcc-------cccCccccccchhhcccccccccchhhhhhhhhccccccccccCCchhhhh
Confidence 3344678888887653 568888888 74 9999999999999999777 799999999999988754
No 50
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=82.16 E-value=0.7 Score=39.52 Aligned_cols=39 Identities=21% Similarity=0.291 Sum_probs=26.0
Q ss_pred cCCcceEEeCCCCCCCCCCCCCCCCceEEEcCCCCcccC
Q 046172 158 LAKVRYFHWDGYPLTSLPSNIYPDKLVFLEIPDSNIEQL 196 (198)
Q Consensus 158 l~~Lr~L~~~~~~l~~LP~~~~l~~L~~L~L~~S~i~~L 196 (198)
+-|.+.|.+.++.+++|.---.+..|+.||+++++|+++
T Consensus 351 LGNIKtL~La~N~iE~LSGL~KLYSLvnLDl~~N~Ie~l 389 (490)
T KOG1259|consen 351 LGNIKTLKLAQNKIETLSGLRKLYSLVNLDLSSNQIEEL 389 (490)
T ss_pred hcCEeeeehhhhhHhhhhhhHhhhhheeccccccchhhH
Confidence 566666666666666665333577777788887777654
No 51
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=80.63 E-value=1.3 Score=23.36 Aligned_cols=17 Identities=18% Similarity=0.368 Sum_probs=13.6
Q ss_pred CCCceEEEcCCCCcccC
Q 046172 180 PDKLVFLEIPDSNIEQL 196 (198)
Q Consensus 180 l~~L~~L~L~~S~i~~L 196 (198)
+.+|.+|+|+.++|+++
T Consensus 1 L~~L~~L~L~~NkI~~I 17 (26)
T smart00365 1 LTNLEELDLSQNKIKKI 17 (26)
T ss_pred CCccCEEECCCCcccee
Confidence 46889999999888754
No 52
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=80.28 E-value=0.91 Score=39.89 Aligned_cols=63 Identities=16% Similarity=0.132 Sum_probs=39.5
Q ss_pred hcCCccccEEEEecccccCCCccccccCCCCc-cCCcceEEeCCCCCCCCCCCCCCCCceEEEcCCCCccc
Q 046172 126 FTKMHKLRFLKFYNSISEGKSKCMVSNCQGPI-LAKVRYFHWDGYPLTSLPSNIYPDKLVFLEIPDSNIEQ 195 (198)
Q Consensus 126 f~~m~~Lr~L~l~~~~~~~~~~~~~~lp~~l~-l~~Lr~L~~~~~~l~~LP~~~~l~~L~~L~L~~S~i~~ 195 (198)
...+.+|..|++++.. ...+...+. +.+|++|.+++..+.++..--.+..|+.|++.++.|.+
T Consensus 91 l~~~~~l~~l~l~~n~-------i~~i~~~l~~~~~L~~L~ls~N~I~~i~~l~~l~~L~~L~l~~N~i~~ 154 (414)
T KOG0531|consen 91 LSKLKSLEALDLYDNK-------IEKIENLLSSLVNLQVLDLSFNKITKLEGLSTLTLLKELNLSGNLISD 154 (414)
T ss_pred cccccceeeeeccccc-------hhhcccchhhhhcchheeccccccccccchhhccchhhheeccCcchh
Confidence 4556666777776542 333333366 77777777777777766655456667777777776654
No 53
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=79.31 E-value=1.4 Score=23.26 Aligned_cols=20 Identities=25% Similarity=0.290 Sum_probs=16.5
Q ss_pred cCCcceEEeCCCCCCCCCCC
Q 046172 158 LAKVRYFHWDGYPLTSLPSN 177 (198)
Q Consensus 158 l~~Lr~L~~~~~~l~~LP~~ 177 (198)
+.+|.+|+.+++.+.+||+-
T Consensus 1 P~~L~~L~vs~N~Lt~LPeL 20 (26)
T smart00364 1 PPSLKELNVSNNQLTSLPEL 20 (26)
T ss_pred CcccceeecCCCccccCccc
Confidence 46788999999999999963
No 54
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=77.30 E-value=1.4 Score=40.66 Aligned_cols=35 Identities=17% Similarity=0.166 Sum_probs=17.9
Q ss_pred cccCCCCc-cCCcceEEeCCCCCCCCCCCCCCCCce
Q 046172 150 VSNCQGPI-LAKVRYFHWDGYPLTSLPSNIYPDKLV 184 (198)
Q Consensus 150 ~~lp~~l~-l~~Lr~L~~~~~~l~~LP~~~~l~~L~ 184 (198)
..+|-.+. +..|++|-++++|+.+=|..++.+..|
T Consensus 224 s~iPv~fr~m~~Lq~l~LenNPLqSPPAqIC~kGkV 259 (722)
T KOG0532|consen 224 SYLPVDFRKMRHLQVLQLENNPLQSPPAQICEKGKV 259 (722)
T ss_pred eecchhhhhhhhheeeeeccCCCCCChHHHHhccce
Confidence 34455555 555555555555555555555544444
No 55
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=76.81 E-value=1.1 Score=38.62 Aligned_cols=88 Identities=11% Similarity=0.172 Sum_probs=57.1
Q ss_pred ceEEEEeeCCcc--cccccChhhhcCCccccEEEEecccccCCCccccccCCCCc-cCCcceEEeCCCCCCC-----CCC
Q 046172 105 KIEGICFDMSKV--KQIGLNLDTFTKMHKLRFLKFYNSISEGKSKCMVSNCQGPI-LAKVRYFHWDGYPLTS-----LPS 176 (198)
Q Consensus 105 ~v~~i~l~~~~~--~~~~~~~~~f~~m~~Lr~L~l~~~~~~~~~~~~~~lp~~l~-l~~Lr~L~~~~~~l~~-----LP~ 176 (198)
.++.+.+....+ +.+..-..+|...++|++|++....+...+ .+.+.+-+. .++||-|++..|-++. +-.
T Consensus 186 ~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~eg--s~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~ 263 (382)
T KOG1909|consen 186 TLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEG--SVALAKALSSWPHLRELNLGDCLLENEGAIAFVD 263 (382)
T ss_pred ccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHH--HHHHHHHhcccchheeecccccccccccHHHHHH
Confidence 344444433322 234566789999999999999876542111 244555666 7789999999998753 222
Q ss_pred CCC--CCCceEEEcCCCCcc
Q 046172 177 NIY--PDKLVFLEIPDSNIE 194 (198)
Q Consensus 177 ~~~--l~~L~~L~L~~S~i~ 194 (198)
.+. ..+|++|+|+++.|+
T Consensus 264 al~~~~p~L~vl~l~gNeIt 283 (382)
T KOG1909|consen 264 ALKESAPSLEVLELAGNEIT 283 (382)
T ss_pred HHhccCCCCceeccCcchhH
Confidence 231 458899999988775
No 56
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=76.61 E-value=5.3 Score=28.26 Aligned_cols=19 Identities=21% Similarity=0.467 Sum_probs=8.1
Q ss_pred cChhhhcCCccccEEEEec
Q 046172 121 LNLDTFTKMHKLRFLKFYN 139 (198)
Q Consensus 121 ~~~~~f~~m~~Lr~L~l~~ 139 (198)
+...+|.++.+|+.+.+.+
T Consensus 26 I~~~~F~~~~~l~~i~~~~ 44 (129)
T PF13306_consen 26 IGENAFSNCTSLKSINFPN 44 (129)
T ss_dssp E-TTTTTT-TT-SEEEESS
T ss_pred eChhhcccccccccccccc
Confidence 4445555555555555543
No 57
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=71.65 E-value=11 Score=26.64 Aligned_cols=19 Identities=21% Similarity=0.366 Sum_probs=12.6
Q ss_pred cChhhhcCCccccEEEEec
Q 046172 121 LNLDTFTKMHKLRFLKFYN 139 (198)
Q Consensus 121 ~~~~~f~~m~~Lr~L~l~~ 139 (198)
++..+|.++.+|+.+.+..
T Consensus 3 i~~~~F~~~~~l~~i~~~~ 21 (129)
T PF13306_consen 3 IGNNAFYNCSNLESITFPN 21 (129)
T ss_dssp E-TTTTTT-TT--EEEETS
T ss_pred ECHHHHhCCCCCCEEEECC
Confidence 5678999999999999874
No 58
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=70.11 E-value=0.71 Score=43.80 Aligned_cols=63 Identities=19% Similarity=0.244 Sum_probs=46.7
Q ss_pred hhhcCCccccEEEEecccccCCCccccccCCCCc-cCCcceEEeCCCCCCCCCCCCCCCCceEEEcCCCCc
Q 046172 124 DTFTKMHKLRFLKFYNSISEGKSKCMVSNCQGPI-LAKVRYFHWDGYPLTSLPSNIYPDKLVFLEIPDSNI 193 (198)
Q Consensus 124 ~~f~~m~~Lr~L~l~~~~~~~~~~~~~~lp~~l~-l~~Lr~L~~~~~~l~~LP~~~~l~~L~~L~L~~S~i 193 (198)
+++..++.|+.||+... +.-++|.--. -..|..|.+.++.+.+|-.--++++|..||++++-|
T Consensus 203 ~~Lr~l~~LkhLDlsyN-------~L~~vp~l~~~gc~L~~L~lrnN~l~tL~gie~LksL~~LDlsyNll 266 (1096)
T KOG1859|consen 203 DNLRRLPKLKHLDLSYN-------CLRHVPQLSMVGCKLQLLNLRNNALTTLRGIENLKSLYGLDLSYNLL 266 (1096)
T ss_pred HHHHhcccccccccccc-------hhccccccchhhhhheeeeecccHHHhhhhHHhhhhhhccchhHhhh
Confidence 46777788888888654 3556666333 556888999888888886555899999999887655
No 59
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=69.28 E-value=3 Score=37.22 Aligned_cols=62 Identities=23% Similarity=0.249 Sum_probs=33.2
Q ss_pred hhcCCccccEEEEecccccCCCccccccCCCC--c-cCCcceEEeCCCCCCC--CCCC------CCCCCceEEEcCCCCc
Q 046172 125 TFTKMHKLRFLKFYNSISEGKSKCMVSNCQGP--I-LAKVRYFHWDGYPLTS--LPSN------IYPDKLVFLEIPDSNI 193 (198)
Q Consensus 125 ~f~~m~~Lr~L~l~~~~~~~~~~~~~~lp~~l--~-l~~Lr~L~~~~~~l~~--LP~~------~~l~~L~~L~L~~S~i 193 (198)
.+.-.+.|+.|++++.. ...+|+.- + ++.|+.|++..|.+.+ +|+. ...-+|..|++..++|
T Consensus 241 ~~~i~~~L~~LdLs~N~-------li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I 313 (505)
T KOG3207|consen 241 STKILQTLQELDLSNNN-------LIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNI 313 (505)
T ss_pred hhhhhhHHhhccccCCc-------ccccccccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCcc
Confidence 34445556666666542 34444322 2 6666666666665443 3333 3355666666666665
No 60
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=59.01 E-value=6.7 Score=19.54 Aligned_cols=14 Identities=21% Similarity=0.420 Sum_probs=9.5
Q ss_pred CCceEEEcCCCCcc
Q 046172 181 DKLVFLEIPDSNIE 194 (198)
Q Consensus 181 ~~L~~L~L~~S~i~ 194 (198)
++|++|+|++++|.
T Consensus 2 ~~L~~L~l~~n~i~ 15 (24)
T PF13516_consen 2 PNLETLDLSNNQIT 15 (24)
T ss_dssp TT-SEEE-TSSBEH
T ss_pred CCCCEEEccCCcCC
Confidence 57888999888774
No 61
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=50.75 E-value=28 Score=28.09 Aligned_cols=16 Identities=0% Similarity=-0.101 Sum_probs=11.2
Q ss_pred HHHHHHHhhhcccCCC
Q 046172 66 QEMGREVVKQESVNNP 81 (198)
Q Consensus 66 ~dmg~~i~~~es~~~~ 81 (198)
|.+|.+|++.-+-+.+
T Consensus 61 rAaAe~Il~~GgaVkf 76 (221)
T KOG3864|consen 61 RAAAEWILHCGGAVKF 76 (221)
T ss_pred hHHHHHHHhcCcceee
Confidence 7888888887654433
No 62
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=48.73 E-value=13 Score=33.42 Aligned_cols=66 Identities=12% Similarity=0.094 Sum_probs=45.9
Q ss_pred hhhcCCccccEEEEecccccCCCccccccCCC-----Cc-cCCcceEEeCCCCCCCCCC---CCCCCCceEEEcCCCCcc
Q 046172 124 DTFTKMHKLRFLKFYNSISEGKSKCMVSNCQG-----PI-LAKVRYFHWDGYPLTSLPS---NIYPDKLVFLEIPDSNIE 194 (198)
Q Consensus 124 ~~f~~m~~Lr~L~l~~~~~~~~~~~~~~lp~~-----l~-l~~Lr~L~~~~~~l~~LP~---~~~l~~L~~L~L~~S~i~ 194 (198)
.....+++|+.|.+..+.. ..+.+|.. .. .++|+||....+++...|+ -+.+++|..|...++.+.
T Consensus 265 ~~~~~l~~L~~Lnls~tgi-----~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln 339 (505)
T KOG3207|consen 265 YKVGTLPGLNQLNLSSTGI-----ASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLN 339 (505)
T ss_pred cccccccchhhhhccccCc-----chhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhccccccc
Confidence 4455777888888887653 23455553 23 8899999999998866553 345888888887666553
No 63
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=48.65 E-value=30 Score=27.98 Aligned_cols=41 Identities=12% Similarity=0.153 Sum_probs=21.5
Q ss_pred hhhcCCccccEEEEecccccCCCccccccCCCCc--cCCcceEEeCCCCC
Q 046172 124 DTFTKMHKLRFLKFYNSISEGKSKCMVSNCQGPI--LAKVRYFHWDGYPL 171 (198)
Q Consensus 124 ~~f~~m~~Lr~L~l~~~~~~~~~~~~~~lp~~l~--l~~Lr~L~~~~~~l 171 (198)
..|..+.+|..|.+.+.. ...+..++. +++|..|.+.++.+
T Consensus 58 ~~lp~l~rL~tLll~nNr-------It~I~p~L~~~~p~l~~L~LtnNsi 100 (233)
T KOG1644|consen 58 DNLPHLPRLHTLLLNNNR-------ITRIDPDLDTFLPNLKTLILTNNSI 100 (233)
T ss_pred ccCCCccccceEEecCCc-------ceeeccchhhhccccceEEecCcch
Confidence 445566666666665542 344444444 44555555555443
No 64
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=47.05 E-value=15 Score=19.22 Aligned_cols=14 Identities=14% Similarity=0.318 Sum_probs=10.2
Q ss_pred CCceEEEcCCCCcc
Q 046172 181 DKLVFLEIPDSNIE 194 (198)
Q Consensus 181 ~~L~~L~L~~S~i~ 194 (198)
++|++|+|+++.|.
T Consensus 2 ~~L~~LdL~~N~i~ 15 (28)
T smart00368 2 PSLRELDLSNNKLG 15 (28)
T ss_pred CccCEEECCCCCCC
Confidence 46778888887764
No 65
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=47.00 E-value=4.1 Score=38.93 Aligned_cols=69 Identities=16% Similarity=0.139 Sum_probs=48.8
Q ss_pred ccChhhhcCCccccEEEEecccccCCCccccccCCCCc-cCCcceEEeCCCCCCCCCCCC-CCCCceEEEcCCCCcccC
Q 046172 120 GLNLDTFTKMHKLRFLKFYNSISEGKSKCMVSNCQGPI-LAKVRYFHWDGYPLTSLPSNI-YPDKLVFLEIPDSNIEQL 196 (198)
Q Consensus 120 ~~~~~~f~~m~~Lr~L~l~~~~~~~~~~~~~~lp~~l~-l~~Lr~L~~~~~~l~~LP~~~-~l~~L~~L~L~~S~i~~L 196 (198)
..-++++.=++.|++|+++... ..... .+. +++|+.|++..+-+..+|.-- .-.+|+.|+++++-++.|
T Consensus 177 ~~mD~SLqll~ale~LnLshNk-------~~~v~-~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~L~~L~lrnN~l~tL 247 (1096)
T KOG1859|consen 177 VLMDESLQLLPALESLNLSHNK-------FTKVD-NLRRLPKLKHLDLSYNCLRHVPQLSMVGCKLQLLNLRNNALTTL 247 (1096)
T ss_pred HhHHHHHHHHHHhhhhccchhh-------hhhhH-HHHhcccccccccccchhccccccchhhhhheeeeecccHHHhh
Confidence 3344555556678888887642 12222 556 899999999988899888543 355699999999988765
No 66
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=40.93 E-value=21 Score=29.62 Aligned_cols=37 Identities=16% Similarity=0.197 Sum_probs=28.5
Q ss_pred cCCcceEEeCCC--C-CCCCCCCC-CCCCceEEEcCCCCcc
Q 046172 158 LAKVRYFHWDGY--P-LTSLPSNI-YPDKLVFLEIPDSNIE 194 (198)
Q Consensus 158 l~~Lr~L~~~~~--~-l~~LP~~~-~l~~L~~L~L~~S~i~ 194 (198)
+++|+.|.++.+ . ...|+--. ..-+|.+|+|++++|+
T Consensus 64 Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~ 104 (260)
T KOG2739|consen 64 LPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIK 104 (260)
T ss_pred cchhhhhcccCCcccccccceehhhhCCceeEEeecCCccc
Confidence 789999999665 2 23465444 4689999999999986
No 67
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=40.18 E-value=30 Score=29.81 Aligned_cols=61 Identities=15% Similarity=0.141 Sum_probs=40.0
Q ss_pred CCccccEEEEecccccCCCccccccCCCCc-cCCcceEEeCCCCC----CCCCCCCCCCCceEEEcCCCCcc
Q 046172 128 KMHKLRFLKFYNSISEGKSKCMVSNCQGPI-LAKVRYFHWDGYPL----TSLPSNIYPDKLVFLEIPDSNIE 194 (198)
Q Consensus 128 ~m~~Lr~L~l~~~~~~~~~~~~~~lp~~l~-l~~Lr~L~~~~~~l----~~LP~~~~l~~L~~L~L~~S~i~ 194 (198)
..+.++-|++.+..+..+. .+-.-++ ++.|+.|++..+++ +++| ...+||.+|-|.++.+.
T Consensus 69 ~~~~v~elDL~~N~iSdWs----eI~~ile~lP~l~~LNls~N~L~s~I~~lp--~p~~nl~~lVLNgT~L~ 134 (418)
T KOG2982|consen 69 SVTDVKELDLTGNLISDWS----EIGAILEQLPALTTLNLSCNSLSSDIKSLP--LPLKNLRVLVLNGTGLS 134 (418)
T ss_pred HhhhhhhhhcccchhccHH----HHHHHHhcCccceEeeccCCcCCCccccCc--ccccceEEEEEcCCCCC
Confidence 4556777777654321110 1111234 88999999998765 5677 67889999999888764
No 68
>PRK04841 transcriptional regulator MalT; Provisional
Probab=35.53 E-value=26 Score=33.68 Aligned_cols=71 Identities=18% Similarity=0.351 Sum_probs=49.8
Q ss_pred CccCcccccceeceeecCCCCCCHHHHHHHHHHcCC-cceechhhcccCCcceee--c--CeEEecHHHHHHHHHHhhhc
Q 046172 2 FDDLDDEEKNIFLDIVCFFKREDKDFIIKFLNACGF-DAQIGISDLVNKSLIVIH--N--NQITMHDLLQEMGREVVKQE 76 (198)
Q Consensus 2 Yd~L~~~~K~~FL~iAcf~~~~~~~~v~~~l~~~g~-~~~~~i~~L~~~sLi~~~--~--~~i~MHdli~dmg~~i~~~e 76 (198)
++.||++.++.++.+|++. ..+.+-+..+. |. ++...+..|.+.+|+... . ..+.+|+++++..+.-...+
T Consensus 260 ~~~l~~~~~~~l~~~a~~~-~~~~~l~~~l~---~~~~~~~~L~~l~~~~l~~~~~~~~~~~yr~H~L~r~~l~~~l~~~ 335 (903)
T PRK04841 260 LDNVDLETRHFLLRCSVLR-SMNDALIVRVT---GEENGQMRLEELERQGLFIQRMDDSGEWFRYHPLFASFLRHRCQWE 335 (903)
T ss_pred HhcCCHHHHHHHHHhcccc-cCCHHHHHHHc---CCCcHHHHHHHHHHCCCeeEeecCCCCEEehhHHHHHHHHHHHHhc
Confidence 5678889999999888875 44444333332 32 245678999999997542 2 36889999999998876443
No 69
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=35.45 E-value=4.7 Score=33.39 Aligned_cols=45 Identities=2% Similarity=-0.214 Sum_probs=27.5
Q ss_pred cccChhhhcCCccccEEEEecccccCCCccccccCCCCc-cCCcceEEeCCCC
Q 046172 119 IGLNLDTFTKMHKLRFLKFYNSISEGKSKCMVSNCQGPI-LAKVRYFHWDGYP 170 (198)
Q Consensus 119 ~~~~~~~f~~m~~Lr~L~l~~~~~~~~~~~~~~lp~~l~-l~~Lr~L~~~~~~ 170 (198)
+.+.++.|++...++-++.++. +..++|.+.+ .+++||+..-++|
T Consensus 77 ~~~~~~d~~q~~e~~~~~~~~n-------~~~~~p~s~~k~~~~k~~e~k~~~ 122 (326)
T KOG0473|consen 77 IKFLPKDAKQQRETVNAASHKN-------NHSQQPKSQKKEPHPKKNEQKKTE 122 (326)
T ss_pred HhhChhhHHHHHHHHHHHhhcc-------chhhCCccccccCCcchhhhccCc
Confidence 4444555666666666665543 3556677777 7777777766665
No 70
>KOG2986 consensus Uncharacterized conserved protein [Function unknown]
Probab=34.81 E-value=32 Score=28.85 Aligned_cols=33 Identities=27% Similarity=0.236 Sum_probs=22.6
Q ss_pred ceechhhcccCCcceeecCeEEecHHHHHHHHH
Q 046172 39 AQIGISDLVNKSLIVIHNNQITMHDLLQEMGRE 71 (198)
Q Consensus 39 ~~~~i~~L~~~sLi~~~~~~i~MHdli~dmg~~ 71 (198)
+..+.+.+++-.=-.|..|.|.||||++|+.-|
T Consensus 92 agVyyN~~v~vngr~iKYGVvS~~~l~qDll~W 124 (313)
T KOG2986|consen 92 AGVYYNPFVNVNGRKIKYGVVSMEDLLQDLLDW 124 (313)
T ss_pred cceEeccceeEcCceeeeeeeeHHHHHHHHHhh
Confidence 445555555444334446889999999999876
No 71
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=31.67 E-value=7.9 Score=29.58 Aligned_cols=58 Identities=7% Similarity=0.083 Sum_probs=45.1
Q ss_pred cccEEEEecccccCCCccccccCCCCc--cCCcceEEeCCCCCCCCCCCC-CCCCceEEEcCCCCccc
Q 046172 131 KLRFLKFYNSISEGKSKCMVSNCQGPI--LAKVRYFHWDGYPLTSLPSNI-YPDKLVFLEIPDSNIEQ 195 (198)
Q Consensus 131 ~Lr~L~l~~~~~~~~~~~~~~lp~~l~--l~~Lr~L~~~~~~l~~LP~~~-~l~~L~~L~L~~S~i~~ 195 (198)
.|....+++. ....+|+.+- .+.+-.|++....++.+|..+ .+.-|.-||++.+.+..
T Consensus 54 el~~i~ls~N-------~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N~l~~ 114 (177)
T KOG4579|consen 54 ELTKISLSDN-------GFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLRFNPLNA 114 (177)
T ss_pred eEEEEecccc-------hhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccccCcccc
Confidence 3444555554 2567888887 678889999999999999888 68999999999887753
No 72
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=30.98 E-value=26 Score=30.55 Aligned_cols=72 Identities=11% Similarity=0.077 Sum_probs=47.6
Q ss_pred cChhhhcCCccccEEEEecccccCCCccccccCCCCc-cCCcceEEeCCCCCC-----CCCCCC-CCCCceEEEcCCCCc
Q 046172 121 LNLDTFTKMHKLRFLKFYNSISEGKSKCMVSNCQGPI-LAKVRYFHWDGYPLT-----SLPSNI-YPDKLVFLEIPDSNI 193 (198)
Q Consensus 121 ~~~~~f~~m~~Lr~L~l~~~~~~~~~~~~~~lp~~l~-l~~Lr~L~~~~~~l~-----~LP~~~-~l~~L~~L~L~~S~i 193 (198)
-...+|+..++|+.++++..++..++. .-+..++. .++||.|+++.+.+. .|-..+ ..++|.+|++.++.+
T Consensus 176 ~~A~~~~~~~~leevr~~qN~I~~eG~--~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll 253 (382)
T KOG1909|consen 176 ALAEAFQSHPTLEEVRLSQNGIRPEGV--TALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLL 253 (382)
T ss_pred HHHHHHHhccccceEEEecccccCchh--HHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeeccccccc
Confidence 346778888888888887654311110 12334556 999999999876552 233333 356999999999887
Q ss_pred c
Q 046172 194 E 194 (198)
Q Consensus 194 ~ 194 (198)
+
T Consensus 254 ~ 254 (382)
T KOG1909|consen 254 E 254 (382)
T ss_pred c
Confidence 5
No 73
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=30.01 E-value=66 Score=26.11 Aligned_cols=42 Identities=14% Similarity=0.240 Sum_probs=35.3
Q ss_pred CCc-cCCcceEEeCCCCCCCCCCCCC--CCCceEEEcCCCCcccC
Q 046172 155 GPI-LAKVRYFHWDGYPLTSLPSNIY--PDKLVFLEIPDSNIEQL 196 (198)
Q Consensus 155 ~l~-l~~Lr~L~~~~~~l~~LP~~~~--l~~L~~L~L~~S~i~~L 196 (198)
.+- ++.|.+|.+..+.+.++-+.+. +.+|..|-|.+++|..|
T Consensus 59 ~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l 103 (233)
T KOG1644|consen 59 NLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQEL 103 (233)
T ss_pred cCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhh
Confidence 455 8899999999999998888873 66799999999988765
No 74
>PF13730 HTH_36: Helix-turn-helix domain
Probab=28.06 E-value=11 Score=22.83 Aligned_cols=49 Identities=20% Similarity=0.314 Sum_probs=31.1
Q ss_pred cCcccccceeceeecCCCCCCH--HHHHHHHHHcCCc---ceechhhcccCCcc
Q 046172 4 DLDDEEKNIFLDIVCFFKREDK--DFIIKFLNACGFD---AQIGISDLVNKSLI 52 (198)
Q Consensus 4 ~L~~~~K~~FL~iAcf~~~~~~--~~v~~~l~~~g~~---~~~~i~~L~~~sLi 52 (198)
+|++.++.++++++-+.++... -....+-..+|.. ....+++|+++++|
T Consensus 2 ~Ls~~~~~v~~~l~~~~~~~~~~~pS~~~la~~~g~s~~Tv~~~i~~L~~~G~I 55 (55)
T PF13730_consen 2 NLSPTAKLVYLYLASYANKNGGCFPSQETLAKDLGVSRRTVQRAIKELEEKGLI 55 (55)
T ss_pred CCCHHHHHHHHHHHHhcCCCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCcCC
Confidence 6788888888888877743221 1233333344655 34668888888775
No 75
>PF05725 FNIP: FNIP Repeat; InterPro: IPR008615 This repeat is approximately 22 residues long and is only found in Dictyostelium discoideum (Slime mould). It appears to be related to IPR001611 from INTERPRO. The alignment consists of two tandem repeats. It is termed the FNIP repeat after the pattern of conserved residues.
Probab=26.25 E-value=1.4e+02 Score=17.17 Aligned_cols=32 Identities=9% Similarity=0.121 Sum_probs=15.5
Q ss_pred cCCcceEEeCCCCCCCCCCCCCCCCceEEEcC
Q 046172 158 LAKVRYFHWDGYPLTSLPSNIYPDKLVFLEIP 189 (198)
Q Consensus 158 l~~Lr~L~~~~~~l~~LP~~~~l~~L~~L~L~ 189 (198)
+++++.|.+...--+.+..+.-|..|..|.+.
T Consensus 11 P~~l~~L~~g~~fn~~i~~~~lP~sl~~L~fg 42 (44)
T PF05725_consen 11 PSSLKSLIFGSSFNQPIEPGSLPNSLKSLSFG 42 (44)
T ss_pred CCCCeEEEECCccCccCCCCccCCCceEEEee
Confidence 55667777722212233333345555555543
No 76
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=24.22 E-value=3 Score=34.55 Aligned_cols=67 Identities=7% Similarity=-0.072 Sum_probs=53.1
Q ss_pred hhhcCCccccEEEEecccccCCCccccccCCCCc-cCCcceEEeCCCCCCCCCCCC-CCCCceEEEcCCCCcccCC
Q 046172 124 DTFTKMHKLRFLKFYNSISEGKSKCMVSNCQGPI-LAKVRYFHWDGYPLTSLPSNI-YPDKLVFLEIPDSNIEQLW 197 (198)
Q Consensus 124 ~~f~~m~~Lr~L~l~~~~~~~~~~~~~~lp~~l~-l~~Lr~L~~~~~~l~~LP~~~-~l~~L~~L~L~~S~i~~LW 197 (198)
.-|+.++.|.-|+++.. ....+|++.+ ...+|-+..+.+.++.+|.++ ....+..+++.++.+..-|
T Consensus 59 ~n~s~~t~~~rl~~skn-------q~~~~~~d~~q~~e~~~~~~~~n~~~~~p~s~~k~~~~k~~e~k~~~~~~~~ 127 (326)
T KOG0473|consen 59 KNFSILTRLVRLDLSKN-------QIKFLPKDAKQQRETVNAASHKNNHSQQPKSQKKEPHPKKNEQKKTEFFRKL 127 (326)
T ss_pred cchHHHHHHHHHhccHh-------hHhhChhhHHHHHHHHHHHhhccchhhCCccccccCCcchhhhccCcchHHH
Confidence 44666777777787654 2567899999 999999999998999999999 5888998988887765433
No 77
>PF15385 SARG: Specifically androgen-regulated gene protein
Probab=23.66 E-value=20 Score=32.57 Aligned_cols=25 Identities=36% Similarity=0.381 Sum_probs=19.3
Q ss_pred CCccCcccccceeceeecCCCCCCHHHHHHHHHH
Q 046172 1 SFDDLDDEEKNIFLDIVCFFKREDKDFIIKFLNA 34 (198)
Q Consensus 1 SYd~L~~~~K~~FL~iAcf~~~~~~~~v~~~l~~ 34 (198)
|||.|..+||+|.|+ | ++-|.-|.+
T Consensus 7 Sl~~LS~EEkecLlF----l-----EETIdSLe~ 31 (497)
T PF15385_consen 7 SLDYLSAEEKECLLF----L-----EETIDSLED 31 (497)
T ss_pred cccccchhhHHHHHH----H-----HHHHHHHhh
Confidence 899999999999885 4 555555555
No 78
>PF08281 Sigma70_r4_2: Sigma-70, region 4; InterPro: IPR013249 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognised by the major sigma factors [, ]. Region 4 of sigma-70 like sigma-factors are involved in binding to the -35 promoter element via a helix-turn-helix motif [].; GO: 0003677 DNA binding, 0003700 sequence-specific DNA binding transcription factor activity, 0016987 sigma factor activity, 0006352 transcription initiation, DNA-dependent, 0006355 regulation of transcription, DNA-dependent; PDB: 2LFW_A 1OR7_B 2H27_D 2O8X_B.
Probab=23.15 E-value=16 Score=21.90 Aligned_cols=28 Identities=25% Similarity=0.421 Sum_probs=18.2
Q ss_pred ccCcccccceeceeecCCCCCCHHHHHHHH
Q 046172 3 DDLDDEEKNIFLDIVCFFKREDKDFIIKFL 32 (198)
Q Consensus 3 d~L~~~~K~~FL~iAcf~~~~~~~~v~~~l 32 (198)
..||+.++++|.. .|+.|++..++-+.+
T Consensus 9 ~~L~~~~r~i~~l--~~~~g~s~~eIa~~l 36 (54)
T PF08281_consen 9 AQLPERQREIFLL--RYFQGMSYAEIAEIL 36 (54)
T ss_dssp HCS-HHHHHHHHH--HHTS---HHHHHHHC
T ss_pred HCCCHHHHHHHHH--HHHHCcCHHHHHHHH
Confidence 4688999999987 568888877776664
Done!