Query 046172
Match_columns 198
No_of_seqs 128 out of 1212
Neff 8.1
Searched_HMMs 29240
Date Mon Mar 25 16:20:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046172.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/046172hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2a5y_B CED-4; apoptosis; HET: 99.3 5.6E-13 1.9E-17 119.3 1.1 76 1-78 370-473 (549)
2 3sfz_A APAF-1, apoptotic pepti 99.0 8.7E-11 3E-15 112.4 0.5 76 1-76 371-452 (1249)
3 1vt4_I APAF-1 related killer D 98.7 1.8E-09 6.3E-14 102.5 -0.6 69 1-69 362-436 (1221)
4 1z6t_A APAF-1, apoptotic prote 98.6 3.6E-09 1.2E-13 94.8 0.1 72 1-72 371-448 (591)
5 2r9u_A Variable lymphocyte rec 98.3 2.5E-06 8.4E-11 64.8 8.2 81 105-194 34-118 (174)
6 3e6j_A Variable lymphocyte rec 98.3 2.2E-06 7.4E-11 67.7 7.8 65 122-193 104-171 (229)
7 3g39_A Variable lymphocyte rec 98.3 3.2E-06 1.1E-10 63.8 8.3 81 105-194 31-115 (170)
8 2v9t_B SLIT homolog 2 protein 98.2 4.8E-06 1.6E-10 65.4 8.1 39 155-193 123-164 (220)
9 2v9t_B SLIT homolog 2 protein 98.2 4.8E-06 1.6E-10 65.4 7.9 70 120-196 70-143 (220)
10 4g8a_A TOLL-like receptor 4; l 98.2 2E-06 6.8E-11 76.3 6.1 67 121-194 91-161 (635)
11 3e6j_A Variable lymphocyte rec 98.1 8.5E-06 2.9E-10 64.3 8.5 69 120-195 78-149 (229)
12 2v70_A SLIT-2, SLIT homolog 2 98.1 5.7E-06 2E-10 65.0 7.4 68 120-194 95-166 (220)
13 2o6r_A Variable lymphocyte rec 98.1 1.2E-05 4E-10 60.6 8.4 68 120-194 66-137 (177)
14 2o6s_A Variable lymphocyte rec 98.1 1.4E-05 4.8E-10 61.6 8.4 83 104-195 52-138 (208)
15 4b8c_D Glucose-repressible alc 98.1 4.8E-06 1.6E-10 76.8 6.5 66 123-195 263-330 (727)
16 3m19_A Variable lymphocyte rec 98.1 1.4E-05 4.8E-10 63.6 8.4 66 122-194 99-168 (251)
17 2o6s_A Variable lymphocyte rec 98.0 1.8E-05 6E-10 61.1 8.5 82 104-194 76-161 (208)
18 4b8c_D Glucose-repressible alc 98.0 4.1E-06 1.4E-10 77.3 5.5 69 120-196 238-308 (727)
19 2v70_A SLIT-2, SLIT homolog 2 98.0 1.6E-05 5.6E-10 62.3 8.2 84 104-196 57-144 (220)
20 4g8a_A TOLL-like receptor 4; l 98.0 8.4E-06 2.9E-10 72.2 7.1 69 120-195 66-138 (635)
21 2je0_A Acidic leucine-rich nuc 98.0 3.7E-06 1.3E-10 61.6 4.0 82 104-196 42-128 (149)
22 3m19_A Variable lymphocyte rec 98.0 1.8E-05 6.2E-10 63.0 8.3 70 120-196 73-146 (251)
23 3a79_B TLR6, VLRB.59, TOLL-lik 98.0 1.1E-05 3.7E-10 71.6 7.5 83 104-196 52-136 (562)
24 1w8a_A SLIT protein; signaling 98.0 1.4E-05 4.9E-10 61.2 7.1 67 121-194 69-139 (192)
25 2wfh_A SLIT homolog 2 protein 98.0 2E-05 7E-10 60.6 7.9 67 120-193 68-138 (193)
26 2ell_A Acidic leucine-rich nuc 98.0 2.2E-05 7.6E-10 58.5 7.9 81 104-195 49-134 (168)
27 1p9a_G Platelet glycoprotein I 98.0 2E-05 6.9E-10 64.4 8.0 69 120-195 114-186 (290)
28 2wfh_A SLIT homolog 2 protein 98.0 3.1E-05 1E-09 59.6 8.5 82 105-196 32-117 (193)
29 2o6q_A Variable lymphocyte rec 98.0 2.5E-05 8.4E-10 62.9 8.2 70 120-196 75-148 (270)
30 3vq2_A TLR4, TOLL-like recepto 98.0 1.8E-05 6E-10 70.5 7.9 68 120-194 70-141 (606)
31 1w8a_A SLIT protein; signaling 98.0 2E-05 6.7E-10 60.5 7.2 83 105-196 30-117 (192)
32 2o6q_A Variable lymphocyte rec 98.0 2.8E-05 9.5E-10 62.6 8.4 67 121-194 124-194 (270)
33 1dce_A Protein (RAB geranylger 97.9 1.3E-05 4.3E-10 72.0 6.7 64 124-195 480-547 (567)
34 2z7x_B TOLL-like receptor 1, v 97.9 1E-05 3.5E-10 70.7 5.9 66 121-194 36-103 (520)
35 2o6r_A Variable lymphocyte rec 97.9 3.8E-05 1.3E-09 57.7 8.3 84 104-196 28-115 (177)
36 1xku_A Decorin; proteoglycan, 97.9 2.9E-05 1E-09 64.0 8.0 68 120-195 66-135 (330)
37 3vq2_A TLR4, TOLL-like recepto 97.9 2.4E-05 8.3E-10 69.6 7.9 69 120-195 94-167 (606)
38 1xku_A Decorin; proteoglycan, 97.9 3.4E-05 1.2E-09 63.6 8.0 69 121-196 207-278 (330)
39 1a9n_A U2A', U2A'; complex (nu 97.9 1.2E-05 4E-10 60.7 4.8 65 124-195 58-127 (176)
40 2xot_A Amphoterin-induced prot 97.9 2.3E-05 7.9E-10 65.9 7.0 70 120-196 102-178 (361)
41 4fcg_A Uncharacterized protein 97.9 1.9E-05 6.5E-10 65.6 6.3 64 124-194 121-196 (328)
42 2xot_A Amphoterin-induced prot 97.9 2.9E-05 1E-09 65.2 7.3 84 104-196 64-151 (361)
43 3o6n_A APL1; leucine-rich repe 97.9 4.1E-05 1.4E-09 64.6 8.2 68 121-195 108-179 (390)
44 2ell_A Acidic leucine-rich nuc 97.9 2E-05 7E-10 58.7 5.6 84 104-196 24-110 (168)
45 3zyi_A Leucine-rich repeat-con 97.9 3.1E-05 1E-09 66.9 7.4 67 121-194 90-160 (452)
46 2ft3_A Biglycan; proteoglycan, 97.8 3.5E-05 1.2E-09 63.7 7.3 64 123-194 95-160 (332)
47 1p9a_G Platelet glycoprotein I 97.8 3.2E-05 1.1E-09 63.2 7.0 63 127-196 74-139 (290)
48 1ozn_A Reticulon 4 receptor; N 97.8 4.7E-05 1.6E-09 61.4 7.7 71 120-196 70-144 (285)
49 2id5_A Lingo-1, leucine rich r 97.8 3.7E-05 1.3E-09 66.5 7.5 66 122-193 48-116 (477)
50 2z62_A TOLL-like receptor 4, v 97.8 3.1E-05 1.1E-09 62.2 6.5 68 121-195 91-163 (276)
51 2z80_A TOLL-like receptor 2, v 97.8 2.4E-05 8.1E-10 65.3 5.8 64 121-191 91-159 (353)
52 1ozn_A Reticulon 4 receptor; N 97.8 5.6E-05 1.9E-09 61.0 7.9 65 123-194 122-190 (285)
53 3rfs_A Internalin B, repeat mo 97.8 6.5E-05 2.2E-09 60.5 8.2 69 120-195 123-195 (272)
54 2r9u_A Variable lymphocyte rec 97.8 6.5E-05 2.2E-09 56.8 7.7 60 130-196 33-96 (174)
55 1ogq_A PGIP-2, polygalacturona 97.8 2.4E-05 8.1E-10 64.5 5.6 44 151-194 116-162 (313)
56 2je0_A Acidic leucine-rich nuc 97.8 1.5E-05 5E-10 58.3 3.7 83 104-195 17-102 (149)
57 3t6q_A CD180 antigen; protein- 97.8 3.3E-05 1.1E-09 68.7 6.7 70 120-195 71-143 (606)
58 3rfs_A Internalin B, repeat mo 97.8 8.4E-05 2.9E-09 59.8 8.4 67 120-193 147-217 (272)
59 1dce_A Protein (RAB geranylger 97.8 3.6E-05 1.2E-09 69.0 6.6 63 126-196 459-523 (567)
60 2z63_A TOLL-like receptor 4, v 97.8 4.5E-05 1.5E-09 67.1 7.1 69 120-195 66-138 (570)
61 3oja_B Anopheles plasmodium-re 97.8 6.6E-05 2.3E-09 67.2 8.2 69 120-195 113-185 (597)
62 3o6n_A APL1; leucine-rich repe 97.8 7.8E-05 2.7E-09 62.8 8.2 70 120-196 83-156 (390)
63 2z81_A CD282 antigen, TOLL-lik 97.7 3.2E-05 1.1E-09 67.9 5.9 65 121-192 65-134 (549)
64 2z63_A TOLL-like receptor 4, v 97.7 6.9E-05 2.4E-09 65.9 8.0 83 104-195 76-163 (570)
65 3v47_A TOLL-like receptor 5B a 97.7 5.7E-05 1.9E-09 64.7 7.1 69 121-195 70-143 (455)
66 2ft3_A Biglycan; proteoglycan, 97.7 3E-05 1E-09 64.0 5.2 69 121-196 208-279 (332)
67 3j0a_A TOLL-like receptor 5; m 97.7 3.2E-05 1.1E-09 72.1 5.7 69 120-195 63-137 (844)
68 2z62_A TOLL-like receptor 4, v 97.7 9.8E-05 3.4E-09 59.3 7.9 69 120-195 66-138 (276)
69 3t6q_A CD180 antigen; protein- 97.7 6.4E-05 2.2E-09 66.8 7.4 70 120-196 95-168 (606)
70 3g39_A Variable lymphocyte rec 97.7 0.00011 3.9E-09 55.1 7.7 60 130-196 30-93 (170)
71 3zyj_A Leucine-rich repeat-con 97.7 5.8E-05 2E-09 64.9 6.8 63 121-190 103-169 (440)
72 1ziw_A TOLL-like receptor 3; i 97.7 8.2E-05 2.8E-09 67.1 8.0 67 121-194 88-158 (680)
73 2z66_A Variable lymphocyte rec 97.7 7E-05 2.4E-09 61.0 6.9 40 154-193 193-235 (306)
74 2ifg_A High affinity nerve gro 97.7 9.3E-05 3.2E-09 61.4 7.7 69 119-194 45-116 (347)
75 1ziw_A TOLL-like receptor 3; i 97.7 7.2E-05 2.4E-09 67.5 7.1 69 120-195 63-135 (680)
76 4ezg_A Putative uncharacterize 97.7 7.2E-05 2.5E-09 57.3 6.0 65 123-194 129-194 (197)
77 4fcg_A Uncharacterized protein 97.6 7.3E-05 2.5E-09 62.1 6.2 64 124-193 223-289 (328)
78 3oja_B Anopheles plasmodium-re 97.6 0.00013 4.6E-09 65.2 8.2 70 120-196 89-162 (597)
79 3zyj_A Leucine-rich repeat-con 97.6 0.00011 3.8E-09 63.1 7.4 37 158-194 184-220 (440)
80 3v47_A TOLL-like receptor 5B a 97.6 0.00016 5.5E-09 61.8 8.3 67 121-194 338-408 (455)
81 1ogq_A PGIP-2, polygalacturona 97.6 4.4E-05 1.5E-09 62.9 4.6 44 151-194 140-187 (313)
82 2ifg_A High affinity nerve gro 97.6 8.7E-05 3E-09 61.6 6.4 64 126-196 27-95 (347)
83 2z80_A TOLL-like receptor 2, v 97.6 5.7E-05 2E-09 62.9 5.0 83 104-195 100-188 (353)
84 4ezg_A Putative uncharacterize 97.6 3.6E-05 1.2E-09 59.1 3.3 67 123-195 105-173 (197)
85 2z7x_B TOLL-like receptor 1, v 97.6 6.4E-05 2.2E-09 65.6 5.2 81 104-194 45-128 (520)
86 3zyi_A Leucine-rich repeat-con 97.6 0.00015 5.3E-09 62.4 7.5 39 156-194 192-231 (452)
87 2xwt_C Thyrotropin receptor; s 97.5 8.8E-05 3E-09 58.3 5.1 68 120-195 95-170 (239)
88 2z81_A CD282 antigen, TOLL-lik 97.5 0.00013 4.5E-09 64.0 6.6 62 124-193 381-443 (549)
89 2z66_A Variable lymphocyte rec 97.5 0.0001 3.5E-09 60.0 5.6 69 122-195 142-213 (306)
90 2xwt_C Thyrotropin receptor; s 97.5 0.00011 3.6E-09 57.9 5.5 64 126-195 123-194 (239)
91 3j0a_A TOLL-like receptor 5; m 97.5 0.00014 4.7E-09 67.8 6.7 69 120-194 87-161 (844)
92 1wwl_A Monocyte differentiatio 97.5 0.00015 5.1E-09 59.5 6.1 65 123-195 221-288 (312)
93 1a9n_A U2A', U2A'; complex (nu 97.5 2.3E-05 7.9E-10 59.0 1.0 81 105-194 65-153 (176)
94 3a79_B TLR6, VLRB.59, TOLL-lik 97.5 0.00011 3.9E-09 65.0 5.6 81 104-194 76-159 (562)
95 1xeu_A Internalin C; cellular 97.5 0.00025 8.7E-09 57.0 7.0 62 126-195 81-142 (263)
96 2id5_A Lingo-1, leucine rich r 97.4 0.00024 8.2E-09 61.4 6.7 69 121-195 95-166 (477)
97 1wwl_A Monocyte differentiatio 97.4 0.00022 7.5E-09 58.5 6.1 59 127-192 118-184 (312)
98 1xeu_A Internalin C; cellular 97.4 0.00011 3.7E-09 59.2 4.1 79 104-195 41-120 (263)
99 1h6u_A Internalin H; cell adhe 97.4 0.0003 1E-08 57.7 6.7 62 126-195 81-143 (308)
100 4fmz_A Internalin; leucine ric 97.4 0.00026 9E-09 58.4 6.4 59 126-192 84-143 (347)
101 1h6t_A Internalin B; cell adhe 97.4 0.00027 9.4E-09 57.6 6.2 63 125-195 107-170 (291)
102 1h6t_A Internalin B; cell adhe 97.4 0.00026 8.8E-09 57.7 6.0 63 126-196 86-149 (291)
103 3rgz_A Protein brassinosteroid 97.4 0.00021 7.2E-09 65.9 6.0 78 111-194 637-717 (768)
104 1h6u_A Internalin H; cell adhe 97.4 0.00036 1.2E-08 57.2 6.8 80 104-195 85-165 (308)
105 3o53_A Protein LRIM1, AGAP0063 97.3 0.00017 6E-09 59.2 4.7 38 158-195 190-228 (317)
106 3o53_A Protein LRIM1, AGAP0063 97.3 0.00025 8.5E-09 58.3 5.5 46 149-194 203-250 (317)
107 1ds9_A Outer arm dynein; leuci 97.3 6.7E-06 2.3E-10 63.2 -3.8 62 125-194 65-128 (198)
108 4ecn_A Leucine-rich repeat pro 97.3 0.00034 1.1E-08 65.9 6.8 61 125-193 568-631 (876)
109 4eco_A Uncharacterized protein 97.3 0.00057 2E-08 61.7 8.0 69 125-194 531-600 (636)
110 4glp_A Monocyte differentiatio 97.3 0.00021 7.2E-09 58.5 4.7 63 126-196 220-287 (310)
111 3oja_A Leucine-rich immune mol 97.3 0.00023 7.9E-09 62.4 4.8 37 158-194 190-227 (487)
112 1o6v_A Internalin A; bacterial 97.2 0.00043 1.5E-08 59.8 6.3 62 126-195 86-148 (466)
113 4eco_A Uncharacterized protein 97.2 0.00062 2.1E-08 61.5 7.5 69 120-195 447-527 (636)
114 1m9s_A Internalin B; cell inva 97.2 0.00052 1.8E-08 62.0 6.8 63 125-195 104-167 (605)
115 3oja_A Leucine-rich immune mol 97.2 0.00029 9.9E-09 61.7 4.6 45 150-194 204-250 (487)
116 4ecn_A Leucine-rich repeat pro 97.2 0.00078 2.7E-08 63.4 7.6 69 120-195 687-767 (876)
117 3bz5_A Internalin-J, INLJ; leu 97.1 0.0011 3.9E-08 57.4 8.0 59 126-195 81-141 (457)
118 3rgz_A Protein brassinosteroid 97.1 0.00083 2.8E-08 61.9 6.9 42 152-193 482-526 (768)
119 1o6v_A Internalin A; bacterial 97.1 0.00051 1.8E-08 59.3 4.9 31 158-188 133-163 (466)
120 1ds9_A Outer arm dynein; leuci 97.0 1.3E-05 4.6E-10 61.5 -5.0 62 124-193 87-152 (198)
121 1m9s_A Internalin B; cell inva 97.0 0.00096 3.3E-08 60.2 5.9 63 126-196 83-146 (605)
122 4fmz_A Internalin; leucine ric 96.9 0.0019 6.4E-08 53.2 6.7 36 158-193 264-299 (347)
123 3bz5_A Internalin-J, INLJ; leu 96.9 0.00091 3.1E-08 58.1 4.8 78 104-196 42-121 (457)
124 3g06_A SSPH2 (leucine-rich rep 96.9 0.0026 8.9E-08 57.6 7.8 75 104-195 61-135 (622)
125 4ay9_X Follicle-stimulating ho 96.8 0.0012 4E-08 55.0 5.0 35 105-141 31-65 (350)
126 4glp_A Monocyte differentiatio 96.8 0.0022 7.7E-08 52.3 6.3 65 123-195 241-308 (310)
127 3cvr_A Invasion plasmid antige 96.7 0.0038 1.3E-07 56.0 7.7 56 128-194 138-193 (571)
128 3g06_A SSPH2 (leucine-rich rep 96.7 0.0046 1.6E-07 56.0 8.3 57 128-195 99-155 (622)
129 1jl5_A Outer protein YOPM; leu 96.3 0.0099 3.4E-07 51.4 7.8 60 125-194 148-208 (454)
130 3cvr_A Invasion plasmid antige 96.3 0.0093 3.2E-07 53.5 7.4 54 131-195 121-174 (571)
131 2ca6_A RAN GTPase-activating p 96.2 0.0011 3.6E-08 55.8 0.9 68 125-194 211-287 (386)
132 1jl5_A Outer protein YOPM; leu 96.0 0.019 6.3E-07 49.7 7.8 67 125-194 190-270 (454)
133 4ay9_X Follicle-stimulating ho 96.0 0.0063 2.1E-07 50.5 4.6 68 121-195 144-216 (350)
134 3sb4_A Hypothetical leucine ri 95.8 0.018 6.2E-07 47.2 6.5 69 119-196 239-312 (329)
135 2ca6_A RAN GTPase-activating p 95.6 0.0026 9E-08 53.3 0.8 36 158-193 273-315 (386)
136 2ast_B S-phase kinase-associat 95.6 0.0014 4.7E-08 53.7 -1.2 64 124-191 136-205 (336)
137 3goz_A Leucine-rich repeat-con 94.9 0.011 3.9E-07 49.1 2.6 58 130-194 80-151 (362)
138 3rw6_A Nuclear RNA export fact 94.7 0.017 5.7E-07 46.9 2.9 65 126-194 166-233 (267)
139 2ast_B S-phase kinase-associat 93.8 0.012 4.1E-07 47.9 0.3 64 126-194 89-156 (336)
140 3rfe_A Platelet glycoprotein I 93.7 0.12 4.2E-06 36.9 5.6 42 151-193 24-67 (130)
141 3e4g_A ATP synthase subunit S, 93.6 0.043 1.5E-06 41.7 3.1 87 103-192 60-150 (176)
142 1z7x_W Ribonuclease inhibitor; 93.2 0.011 3.9E-07 50.2 -0.9 43 152-194 105-155 (461)
143 3goz_A Leucine-rich repeat-con 92.8 0.023 7.7E-07 47.3 0.3 66 124-195 44-123 (362)
144 1z7x_W Ribonuclease inhibitor; 92.5 0.0088 3E-07 50.9 -2.6 69 124-194 335-411 (461)
145 3un9_A NLR family member X1; l 90.2 0.024 8.2E-07 47.8 -2.2 69 124-194 177-252 (372)
146 3ogk_B Coronatine-insensitive 89.1 0.6 2E-05 40.7 5.9 40 154-193 264-305 (592)
147 3sb4_A Hypothetical leucine ri 87.9 0.74 2.5E-05 37.4 5.3 61 119-187 262-327 (329)
148 3ogk_B Coronatine-insensitive 86.1 0.083 2.8E-06 46.3 -1.5 37 158-194 487-526 (592)
149 3un9_A NLR family member X1; l 84.8 0.079 2.7E-06 44.6 -2.2 65 128-194 153-224 (372)
150 1io0_A Tropomodulin; LRR prote 84.7 0.11 3.8E-06 39.1 -1.2 69 123-193 86-163 (185)
151 3rw6_A Nuclear RNA export fact 84.7 0.48 1.6E-05 38.2 2.5 39 158-196 169-211 (267)
152 1io0_A Tropomodulin; LRR prote 83.7 0.094 3.2E-06 39.5 -2.0 90 103-194 35-136 (185)
153 2p1m_B Transport inhibitor res 82.6 0.4 1.4E-05 41.8 1.3 12 180-191 210-221 (594)
154 3rfe_A Platelet glycoprotein I 81.5 1.2 4E-05 31.6 3.3 22 120-141 45-66 (130)
155 4fdw_A Leucine rich hypothetic 81.4 2.2 7.5E-05 36.0 5.5 21 120-140 261-281 (401)
156 2ra8_A Uncharacterized protein 79.1 0.93 3.2E-05 38.0 2.4 34 158-192 171-204 (362)
157 2p1m_B Transport inhibitor res 77.5 0.15 5E-06 44.6 -3.2 61 128-192 128-195 (594)
158 2ra8_A Uncharacterized protein 76.8 0.31 1.1E-05 40.9 -1.3 11 128-138 217-227 (362)
159 4fdw_A Leucine rich hypothetic 76.4 3.5 0.00012 34.7 5.2 73 121-194 291-383 (401)
160 4h09_A Hypothetical leucine ri 70.7 8.3 0.00028 31.5 6.1 33 158-190 285-319 (379)
161 4fs7_A Uncharacterized protein 56.2 8.3 0.00028 31.9 3.4 70 121-191 288-376 (394)
162 4gt6_A Cell surface protein; l 56.1 25 0.00086 28.9 6.4 33 158-191 333-367 (394)
163 4gt6_A Cell surface protein; l 55.4 17 0.00057 30.0 5.2 63 120-191 278-344 (394)
164 4h09_A Hypothetical leucine ri 52.8 15 0.00051 29.9 4.4 62 122-191 278-343 (379)
165 3e4g_A ATP synthase subunit S, 45.6 16 0.00054 27.3 3.1 59 130-194 61-128 (176)
166 4fs7_A Uncharacterized protein 44.8 29 0.001 28.4 5.0 74 119-194 265-355 (394)
167 3ukw_C Bimax1 peptide; arm rep 26.1 29 0.00098 17.2 1.1 9 80-88 20-28 (28)
168 2xvc_A ESCRT-III, SSO0910; cel 25.6 21 0.00073 21.7 0.7 13 43-55 46-58 (59)
No 1
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=99.27 E-value=5.6e-13 Score=119.34 Aligned_cols=76 Identities=11% Similarity=0.102 Sum_probs=63.9
Q ss_pred CCccCcccccceec-----------eeecCCCCCCHHHHHHHHHHc--CCccee-----------chhhcccCCcceee-
Q 046172 1 SFDDLDDEEKNIFL-----------DIVCFFKREDKDFIIKFLNAC--GFDAQI-----------GISDLVNKSLIVIH- 55 (198)
Q Consensus 1 SYd~L~~~~K~~FL-----------~iAcf~~~~~~~~v~~~l~~~--g~~~~~-----------~i~~L~~~sLi~~~- 55 (198)
||++|+++.|.||+ |||+||+|+... +.+|.++ ||.... ++++|+++|||+..
T Consensus 370 Sy~~L~~~lk~~f~~Ls~~er~l~~~ls~fp~~~~i~--i~~w~a~~~G~i~~~~~~~~~~~~~~~l~~L~~rsLl~~~~ 447 (549)
T 2a5y_B 370 SYKSLAMALQRCVEVLSDEDRSALAFAVVMPPGVDIP--VKLWSCVIPVDICSNEEEQLDDEVADRLKRLSKRGALLSGK 447 (549)
T ss_dssp SSSSHHHHHHHHHHTSCHHHHHHTTGGGSSCTTCCEE--HHHHHHHSCC-------CCCTHHHHHHHHHTTTBSSCSEEE
T ss_pred ccccccHHHHHHHhccchhhhhHhhheeeeCCCCeee--eeeeeeeccceeccCCCCCCHHHHHHHHHHHHHcCCeeEec
Confidence 89999999999999 999999998877 7899999 776432 49999999999886
Q ss_pred c---CeEEecHHHHHHHHHHhhhccc
Q 046172 56 N---NQITMHDLLQEMGREVVKQESV 78 (198)
Q Consensus 56 ~---~~i~MHdli~dmg~~i~~~es~ 78 (198)
. .+++|||+||++|++++++++.
T Consensus 448 ~~~~~~~~mHdlv~~~a~~~~~~~~~ 473 (549)
T 2a5y_B 448 RMPVLTFKIDHIIHMFLKHVVDAQTI 473 (549)
T ss_dssp CSSSCEEECCHHHHHHHHTTSCTHHH
T ss_pred CCCceEEEeChHHHHHHHHHHHHHHH
Confidence 2 4699999999999999988764
No 2
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=98.95 E-value=8.7e-11 Score=112.37 Aligned_cols=76 Identities=20% Similarity=0.262 Sum_probs=67.4
Q ss_pred CCccCcccccceeceeecCCCCCC--HHHHHHHHHHcCCcceechhhcccCCcceee-cC---eEEecHHHHHHHHHHhh
Q 046172 1 SFDDLDDEEKNIFLDIVCFFKRED--KDFIIKFLNACGFDAQIGISDLVNKSLIVIH-NN---QITMHDLLQEMGREVVK 74 (198)
Q Consensus 1 SYd~L~~~~K~~FL~iAcf~~~~~--~~~v~~~l~~~g~~~~~~i~~L~~~sLi~~~-~~---~i~MHdli~dmg~~i~~ 74 (198)
||+.|++++|+||++||+||++.. .+.+..+|.+.+..+...+++|+++|||+.. ++ +++|||++|++|++.+.
T Consensus 371 s~~~L~~~~~~~~~~l~~f~~~~~i~~~~~~~~~~~~~~~~~~~l~~L~~~sl~~~~~~~~~~~~~~h~l~~~~~~~~~~ 450 (1249)
T 3sfz_A 371 SVEMLREDIKDYYTDLSILQKDVKVPTKVLCVLWDLETEEVEDILQEFVNKSLLFCNRNGKSFCYYLHDLQVDFLTEKNR 450 (1249)
T ss_dssp HHHTSCTTTHHHHHHGGGSCTTCCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSCEEEESSSSEEEECCHHHHHHHHHHTG
T ss_pred HHHhCCHHHHHHHHHhCccCCCCeeCHHHHHHHhCCCHHHHHHHHHHHHhccceEEecCCCceEEEecHHHHHHHHhhhh
Confidence 799999999999999999999865 6789999987766678889999999999988 44 39999999999999877
Q ss_pred hc
Q 046172 75 QE 76 (198)
Q Consensus 75 ~e 76 (198)
++
T Consensus 451 ~~ 452 (1249)
T 3sfz_A 451 SQ 452 (1249)
T ss_dssp GG
T ss_pred HH
Confidence 65
No 3
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=98.67 E-value=1.8e-09 Score=102.49 Aligned_cols=69 Identities=16% Similarity=0.213 Sum_probs=60.3
Q ss_pred CCccCcccc-cceeceeecCCCCCC--HHHHHHHHHHcCC-cceechhhcccCCcceee--cCeEEecHHHHHHH
Q 046172 1 SFDDLDDEE-KNIFLDIVCFFKRED--KDFIIKFLNACGF-DAQIGISDLVNKSLIVIH--NNQITMHDLLQEMG 69 (198)
Q Consensus 1 SYd~L~~~~-K~~FL~iAcf~~~~~--~~~v~~~l~~~g~-~~~~~i~~L~~~sLi~~~--~~~i~MHdli~dmg 69 (198)
||+.|++++ |+||++|||||++.. .+.+..+|.+.|- .+..++++|+++|||+.+ .++++||||+++++
T Consensus 362 SYd~Lp~eelK~cFL~LAIFPed~~I~~elLa~LW~aeGeedAe~~L~eLvdRSLLq~d~~~~rYrMHDLllELr 436 (1221)
T 1vt4_I 362 SLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELK 436 (1221)
T ss_dssp HHHHSCTTHHHHHHHHTTSSCTTSCEEHHHHHHHHCSSCSHHHHHHHHHHHTSSSSSBCSSSSEEBCCCHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHhcCCCHHHHHHHHHHHHhhCCEEEeCCCCEEEehHHHHHHh
Confidence 799999999 999999999999876 4678999988763 366789999999999987 46899999999865
No 4
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=98.63 E-value=3.6e-09 Score=94.76 Aligned_cols=72 Identities=21% Similarity=0.264 Sum_probs=60.7
Q ss_pred CCccCcccccceeceeecCCCCCC--HHHHHHHHHHcCCcceechhhcccCCcceee-c---CeEEecHHHHHHHHHH
Q 046172 1 SFDDLDDEEKNIFLDIVCFFKRED--KDFIIKFLNACGFDAQIGISDLVNKSLIVIH-N---NQITMHDLLQEMGREV 72 (198)
Q Consensus 1 SYd~L~~~~K~~FL~iAcf~~~~~--~~~v~~~l~~~g~~~~~~i~~L~~~sLi~~~-~---~~i~MHdli~dmg~~i 72 (198)
||+.|++++|.||+++||||+|.. .+.+..+|.+.+..+...++.|+++|||++. + .++.|||++|+++++.
T Consensus 371 s~~~L~~~~~~~l~~la~f~~~~~i~~~~l~~l~~~~~~~~~~~l~~L~~~~Ll~~~~~~~~~~~~~H~lv~~~~~~~ 448 (591)
T 1z6t_A 371 SVEMLREDIKDYYTDLSILQKDVKVPTKVLCILWDMETEEVEDILQEFVNKSLLFCDRNGKSFRYYLHDLQVDFLTEK 448 (591)
T ss_dssp HHHTSCTTTHHHHHHGGGCCTTCCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSSEEEEETTEEEEECCHHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHccccCCCCccCHHHHHHHhccCHHHHHHHHHHHHhCcCeEEecCCCccEEEEcHHHHHHHHhh
Confidence 689999999999999999999865 4678888865444467789999999999876 2 3799999999999877
No 5
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.29 E-value=2.5e-06 Score=64.83 Aligned_cols=81 Identities=14% Similarity=0.215 Sum_probs=64.6
Q ss_pred ceEEEEeeCCcccccccChhhhcCCccccEEEEecccccCCCccccccCCCC-c-cCCcceEEeCCCCCCCCCCC-C-CC
Q 046172 105 KIEGICFDMSKVKQIGLNLDTFTKMHKLRFLKFYNSISEGKSKCMVSNCQGP-I-LAKVRYFHWDGYPLTSLPSN-I-YP 180 (198)
Q Consensus 105 ~v~~i~l~~~~~~~~~~~~~~f~~m~~Lr~L~l~~~~~~~~~~~~~~lp~~l-~-l~~Lr~L~~~~~~l~~LP~~-~-~l 180 (198)
.++.+.+. ...-..+++.+|.++++|+.|++.+.. ...+|.+. . +++|++|+++++.+..+|.. | .+
T Consensus 34 ~L~~L~Ls--~N~l~~~~~~~~~~l~~L~~L~Ls~N~-------l~~i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l 104 (174)
T 2r9u_A 34 DKQRLWLN--NNQITKLEPGVFDHLVNLQQLYFNSNK-------LTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNL 104 (174)
T ss_dssp TCSEEECC--SSCCCCCCTTTTTTCTTCCEEECCSSC-------CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTC
T ss_pred CCcEEEeC--CCCccccCHHHhcCCcCCCEEECCCCC-------CCccChhHhCCcchhhEEECCCCccceeCHHHhccc
Confidence 44554443 332245667899999999999998863 56777765 6 99999999999999999987 6 59
Q ss_pred CCceEEEcCCCCcc
Q 046172 181 DKLVFLEIPDSNIE 194 (198)
Q Consensus 181 ~~L~~L~L~~S~i~ 194 (198)
.+|++|+|+++.+.
T Consensus 105 ~~L~~L~L~~N~~~ 118 (174)
T 2r9u_A 105 KSLTHIYLYNNPWD 118 (174)
T ss_dssp TTCSEEECCSSCBC
T ss_pred cCCCEEEeCCCCcc
Confidence 99999999999875
No 6
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=98.27 E-value=2.2e-06 Score=67.75 Aligned_cols=65 Identities=15% Similarity=0.146 Sum_probs=31.2
Q ss_pred ChhhhcCCccccEEEEecccccCCCccccccCCCCc-cCCcceEEeCCCCCCCCCCC-C-CCCCceEEEcCCCCc
Q 046172 122 NLDTFTKMHKLRFLKFYNSISEGKSKCMVSNCQGPI-LAKVRYFHWDGYPLTSLPSN-I-YPDKLVFLEIPDSNI 193 (198)
Q Consensus 122 ~~~~f~~m~~Lr~L~l~~~~~~~~~~~~~~lp~~l~-l~~Lr~L~~~~~~l~~LP~~-~-~l~~L~~L~L~~S~i 193 (198)
++.+|.++.+|+.|++.+.. ...+|.++. +++|++|+++++.+..+|.. | .+.+|+.|+|.++.+
T Consensus 104 ~~~~~~~l~~L~~L~Ls~N~-------l~~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~ 171 (229)
T 3e6j_A 104 PSAVFDRLVHLKELFMCCNK-------LTELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPW 171 (229)
T ss_dssp CTTTTTTCTTCCEEECCSSC-------CCSCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCB
T ss_pred ChhHhCcchhhCeEeccCCc-------ccccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCc
Confidence 33444444444444444331 234455555 55555555555555555533 3 355555555555443
No 7
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.27 E-value=3.2e-06 Score=63.83 Aligned_cols=81 Identities=14% Similarity=0.184 Sum_probs=63.8
Q ss_pred ceEEEEeeCCcccccccChhhhcCCccccEEEEecccccCCCccccccCCCC-c-cCCcceEEeCCCCCCCCCCC-C-CC
Q 046172 105 KIEGICFDMSKVKQIGLNLDTFTKMHKLRFLKFYNSISEGKSKCMVSNCQGP-I-LAKVRYFHWDGYPLTSLPSN-I-YP 180 (198)
Q Consensus 105 ~v~~i~l~~~~~~~~~~~~~~f~~m~~Lr~L~l~~~~~~~~~~~~~~lp~~l-~-l~~Lr~L~~~~~~l~~LP~~-~-~l 180 (198)
.++.+.+. ...-..+++.+|.++.+|+.|++.+.. ...+|.+. . +++|++|+++++.+..+|.. | .+
T Consensus 31 ~l~~L~L~--~N~i~~~~~~~~~~l~~L~~L~Ls~N~-------l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l 101 (170)
T 3g39_A 31 TTQVLYLY--DNQITKLEPGVFDRLTQLTRLDLDNNQ-------LTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNL 101 (170)
T ss_dssp TCSEEECC--SSCCCCCCTTTTTTCTTCSEEECCSSC-------CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTC
T ss_pred CCcEEEcC--CCcCCccChhhhcCcccCCEEECCCCC-------cCccChhhccCCCCCCEEECCCCccCEeCHHHhcCC
Confidence 44554443 332245668899999999999998863 45677764 6 99999999999999999986 6 69
Q ss_pred CCceEEEcCCCCcc
Q 046172 181 DKLVFLEIPDSNIE 194 (198)
Q Consensus 181 ~~L~~L~L~~S~i~ 194 (198)
.+|++|+|+++.+.
T Consensus 102 ~~L~~L~L~~N~~~ 115 (170)
T 3g39_A 102 KSLTHIWLLNNPWD 115 (170)
T ss_dssp TTCCEEECCSSCBC
T ss_pred CCCCEEEeCCCCCC
Confidence 99999999999764
No 8
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=98.19 E-value=4.8e-06 Score=65.42 Aligned_cols=39 Identities=5% Similarity=0.076 Sum_probs=19.5
Q ss_pred CCc-cCCcceEEeCCCCCCCCCCC-C-CCCCceEEEcCCCCc
Q 046172 155 GPI-LAKVRYFHWDGYPLTSLPSN-I-YPDKLVFLEIPDSNI 193 (198)
Q Consensus 155 ~l~-l~~Lr~L~~~~~~l~~LP~~-~-~l~~L~~L~L~~S~i 193 (198)
.+. +++|++|++.++.+..+|.. | .+.+|+.|+|+++.+
T Consensus 123 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~ 164 (220)
T 2v9t_B 123 AFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPF 164 (220)
T ss_dssp TTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCE
T ss_pred HcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCc
Confidence 344 55555555555555555443 3 355555555555443
No 9
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=98.19 E-value=4.8e-06 Score=65.43 Aligned_cols=70 Identities=16% Similarity=0.249 Sum_probs=50.7
Q ss_pred ccChhhhcCCccccEEEEecccccCCCccccccCCCC-c-cCCcceEEeCCCCCCCCC-CCC-CCCCceEEEcCCCCccc
Q 046172 120 GLNLDTFTKMHKLRFLKFYNSISEGKSKCMVSNCQGP-I-LAKVRYFHWDGYPLTSLP-SNI-YPDKLVFLEIPDSNIEQ 195 (198)
Q Consensus 120 ~~~~~~f~~m~~Lr~L~l~~~~~~~~~~~~~~lp~~l-~-l~~Lr~L~~~~~~l~~LP-~~~-~l~~L~~L~L~~S~i~~ 195 (198)
.+.+.+|.++.+|+.|++.+.. ...+|.+. . +++|++|+++++.+..+| ..| .+.+|++|+|++++|..
T Consensus 70 ~~~~~~~~~l~~L~~L~Ls~N~-------l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 142 (220)
T 2v9t_B 70 ELAPDAFQGLRSLNSLVLYGNK-------ITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQT 142 (220)
T ss_dssp EECTTTTTTCSSCCEEECCSSC-------CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSC
T ss_pred CcCHHHhhCCcCCCEEECCCCc-------CCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCE
Confidence 4456777788888888887653 44666654 4 888888888888888775 446 58888888888887764
Q ss_pred C
Q 046172 196 L 196 (198)
Q Consensus 196 L 196 (198)
+
T Consensus 143 ~ 143 (220)
T 2v9t_B 143 I 143 (220)
T ss_dssp C
T ss_pred E
Confidence 3
No 10
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=98.17 E-value=2e-06 Score=76.31 Aligned_cols=67 Identities=18% Similarity=0.131 Sum_probs=38.3
Q ss_pred cChhhhcCCccccEEEEecccccCCCccccccCCC-Cc-cCCcceEEeCCCCCCCCCCC-C-CCCCceEEEcCCCCcc
Q 046172 121 LNLDTFTKMHKLRFLKFYNSISEGKSKCMVSNCQG-PI-LAKVRYFHWDGYPLTSLPSN-I-YPDKLVFLEIPDSNIE 194 (198)
Q Consensus 121 ~~~~~f~~m~~Lr~L~l~~~~~~~~~~~~~~lp~~-l~-l~~Lr~L~~~~~~l~~LP~~-~-~l~~L~~L~L~~S~i~ 194 (198)
+++.+|.++++|++|++.+. ....+|.+ +. +++|++|++.++.+..+|.. | .+.+|++|+|+++++.
T Consensus 91 i~~~~f~~L~~L~~L~Ls~N-------~l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~ 161 (635)
T 4g8a_A 91 IEDGAYQSLSHLSTLILTGN-------PIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQ 161 (635)
T ss_dssp ECTTTTTTCTTCCEEECTTC-------CCCEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCC
T ss_pred cChhHhcCCCCCCEEEccCC-------cCCCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccc
Confidence 34455555555555555543 23345543 44 66666666666666666653 4 4666666666666554
No 11
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=98.13 E-value=8.5e-06 Score=64.30 Aligned_cols=69 Identities=17% Similarity=0.230 Sum_probs=50.1
Q ss_pred ccChhhhcCCccccEEEEecccccCCCccccccCCC-Cc-cCCcceEEeCCCCCCCCCCCC-CCCCceEEEcCCCCccc
Q 046172 120 GLNLDTFTKMHKLRFLKFYNSISEGKSKCMVSNCQG-PI-LAKVRYFHWDGYPLTSLPSNI-YPDKLVFLEIPDSNIEQ 195 (198)
Q Consensus 120 ~~~~~~f~~m~~Lr~L~l~~~~~~~~~~~~~~lp~~-l~-l~~Lr~L~~~~~~l~~LP~~~-~l~~L~~L~L~~S~i~~ 195 (198)
.+++.+|.++.+|+.|++.+.. ...+|.+ +. +++|++|++.++.+..+|..+ .+.+|++|+|++++|..
T Consensus 78 ~i~~~~~~~l~~L~~L~Ls~N~-------l~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~ 149 (229)
T 3e6j_A 78 ALPVGVFDSLTQLTVLDLGTNQ-------LTVLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQLKS 149 (229)
T ss_dssp CCCTTTTTTCTTCCEEECCSSC-------CCCCCTTTTTTCTTCCEEECCSSCCCSCCTTGGGCTTCSEEECCSSCCCC
T ss_pred CcChhhcccCCCcCEEECCCCc-------CCccChhHhCcchhhCeEeccCCcccccCcccccCCCCCEEECCCCcCCc
Confidence 4555667777777777776652 3455554 45 888888888888888888877 58888888888887764
No 12
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=98.13 E-value=5.7e-06 Score=64.95 Aligned_cols=68 Identities=16% Similarity=0.239 Sum_probs=43.7
Q ss_pred ccChhhhcCCccccEEEEecccccCCCcccccc-CCCCc-cCCcceEEeCCCCCCCC-CCCC-CCCCceEEEcCCCCcc
Q 046172 120 GLNLDTFTKMHKLRFLKFYNSISEGKSKCMVSN-CQGPI-LAKVRYFHWDGYPLTSL-PSNI-YPDKLVFLEIPDSNIE 194 (198)
Q Consensus 120 ~~~~~~f~~m~~Lr~L~l~~~~~~~~~~~~~~l-p~~l~-l~~Lr~L~~~~~~l~~L-P~~~-~l~~L~~L~L~~S~i~ 194 (198)
.+++.+|.++++|+.|++.+.. ...+ |..+. +++|++|+++++.+..+ |..| .+.+|+.|+|+++.+.
T Consensus 95 ~~~~~~~~~l~~L~~L~Ls~N~-------l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 166 (220)
T 2v70_A 95 NVQHKMFKGLESLKTLMLRSNR-------ITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFN 166 (220)
T ss_dssp CCCGGGGTTCSSCCEEECTTSC-------CCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEE
T ss_pred ccCHhHhcCCcCCCEEECCCCc-------CCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCc
Confidence 3455566666666666666542 2233 55666 77777777777777776 4556 4777777777777653
No 13
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.11 E-value=1.2e-05 Score=60.62 Aligned_cols=68 Identities=22% Similarity=0.228 Sum_probs=42.8
Q ss_pred ccChhhhcCCccccEEEEecccccCCCccccccCCC-Cc-cCCcceEEeCCCCCCCCCCCC--CCCCceEEEcCCCCcc
Q 046172 120 GLNLDTFTKMHKLRFLKFYNSISEGKSKCMVSNCQG-PI-LAKVRYFHWDGYPLTSLPSNI--YPDKLVFLEIPDSNIE 194 (198)
Q Consensus 120 ~~~~~~f~~m~~Lr~L~l~~~~~~~~~~~~~~lp~~-l~-l~~Lr~L~~~~~~l~~LP~~~--~l~~L~~L~L~~S~i~ 194 (198)
.+++.+|.++.+|+.|++.+.. ...+|.+ +. +++|++|++.++.+..+|..+ .+.+|++|+|+++.+.
T Consensus 66 ~~~~~~~~~l~~L~~L~l~~N~-------l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 137 (177)
T 2o6r_A 66 SLPDGVFDKLTKLTILYLHENK-------LQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD 137 (177)
T ss_dssp CCCTTTTTTCTTCCEEECCSSC-------CCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred EeChhHccCCCccCEEECCCCC-------ccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCee
Confidence 3445556666667766666542 3345444 34 777777777777777777653 3677777777776653
No 14
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=98.07 E-value=1.4e-05 Score=61.64 Aligned_cols=83 Identities=18% Similarity=0.259 Sum_probs=57.2
Q ss_pred cceEEEEeeCCcccccccChhhhcCCccccEEEEecccccCCCccccccCCC-Cc-cCCcceEEeCCCCCCCCCCC-C-C
Q 046172 104 EKIEGICFDMSKVKQIGLNLDTFTKMHKLRFLKFYNSISEGKSKCMVSNCQG-PI-LAKVRYFHWDGYPLTSLPSN-I-Y 179 (198)
Q Consensus 104 ~~v~~i~l~~~~~~~~~~~~~~f~~m~~Lr~L~l~~~~~~~~~~~~~~lp~~-l~-l~~Lr~L~~~~~~l~~LP~~-~-~ 179 (198)
.+++.+.+.-... ..+++.+|.++.+|++|++.+.. ...+|.+ +. +++|++|++.++.+..+|.. | .
T Consensus 52 ~~L~~L~l~~n~l--~~~~~~~~~~l~~L~~L~Ls~n~-------l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~ 122 (208)
T 2o6s_A 52 TSLTQLYLGGNKL--QSLPNGVFNKLTSLTYLNLSTNQ-------LQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDK 122 (208)
T ss_dssp TTCSEEECCSSCC--CCCCTTTTTTCTTCCEEECCSSC-------CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT
T ss_pred ccCcEEECCCCcc--CccChhhcCCCCCcCEEECCCCc-------CCccCHhHhcCccCCCEEEcCCCcCcccCHhHhcc
Confidence 3455554443322 24566677888888888887653 3455554 45 88888888888888888876 4 5
Q ss_pred CCCceEEEcCCCCccc
Q 046172 180 PDKLVFLEIPDSNIEQ 195 (198)
Q Consensus 180 l~~L~~L~L~~S~i~~ 195 (198)
+.+|++|+|+++.+..
T Consensus 123 l~~L~~L~l~~N~l~~ 138 (208)
T 2o6s_A 123 LTQLKDLRLYQNQLKS 138 (208)
T ss_dssp CTTCCEEECCSSCCSC
T ss_pred CCcCCEEECCCCccce
Confidence 8888888888887754
No 15
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=98.06 E-value=4.8e-06 Score=76.76 Aligned_cols=66 Identities=20% Similarity=0.255 Sum_probs=57.3
Q ss_pred hhhhcCCccccEEEEecccccCCCccccccCCCCc-cCCcceEEeCCCCCCCCCCCC-CCCCceEEEcCCCCccc
Q 046172 123 LDTFTKMHKLRFLKFYNSISEGKSKCMVSNCQGPI-LAKVRYFHWDGYPLTSLPSNI-YPDKLVFLEIPDSNIEQ 195 (198)
Q Consensus 123 ~~~f~~m~~Lr~L~l~~~~~~~~~~~~~~lp~~l~-l~~Lr~L~~~~~~l~~LP~~~-~l~~L~~L~L~~S~i~~ 195 (198)
+..|.++.+|++|++.++. ...+|.++. +++|++|++.++.+..+|..| .+.+|.+|+|+++++..
T Consensus 263 p~~~~~l~~L~~L~Ls~N~-------l~~lp~~~~~l~~L~~L~L~~N~l~~lp~~~~~l~~L~~L~L~~N~l~~ 330 (727)
T 4b8c_D 263 PAEIKNLSNLRVLDLSHNR-------LTSLPAELGSCFQLKYFYFFDNMVTTLPWEFGNLCNLQFLGVEGNPLEK 330 (727)
T ss_dssp CGGGGGGTTCCEEECTTSC-------CSSCCSSGGGGTTCSEEECCSSCCCCCCSSTTSCTTCCCEECTTSCCCS
T ss_pred ChhhhCCCCCCEEeCcCCc-------CCccChhhcCCCCCCEEECCCCCCCccChhhhcCCCccEEeCCCCccCC
Confidence 4678899999999998763 457899999 999999999999999999988 69999999999998863
No 16
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=98.06 E-value=1.4e-05 Score=63.62 Aligned_cols=66 Identities=20% Similarity=0.260 Sum_probs=29.2
Q ss_pred ChhhhcCCccccEEEEecccccCCCccccccCCC-Cc-cCCcceEEeCCCCCCCCCCC-C-CCCCceEEEcCCCCcc
Q 046172 122 NLDTFTKMHKLRFLKFYNSISEGKSKCMVSNCQG-PI-LAKVRYFHWDGYPLTSLPSN-I-YPDKLVFLEIPDSNIE 194 (198)
Q Consensus 122 ~~~~f~~m~~Lr~L~l~~~~~~~~~~~~~~lp~~-l~-l~~Lr~L~~~~~~l~~LP~~-~-~l~~L~~L~L~~S~i~ 194 (198)
++.+|.++.+|+.|++.+.. ...+|.+ +. +++|+.|++.++.+..+|.. | .+.+|++|+|+++++.
T Consensus 99 ~~~~~~~l~~L~~L~L~~N~-------l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 168 (251)
T 3m19_A 99 PLGVFDHLTQLDKLYLGGNQ-------LKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQ 168 (251)
T ss_dssp CTTTTTTCTTCCEEECCSSC-------CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS
T ss_pred ChhHhcccCCCCEEEcCCCc-------CCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCC
Confidence 34444555555555554432 2233332 23 44444455444444444442 3 3444444444444443
No 17
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=98.04 E-value=1.8e-05 Score=61.12 Aligned_cols=82 Identities=16% Similarity=0.220 Sum_probs=60.7
Q ss_pred cceEEEEeeCCcccccccChhhhcCCccccEEEEecccccCCCccccccCCC-Cc-cCCcceEEeCCCCCCCCCCC-C-C
Q 046172 104 EKIEGICFDMSKVKQIGLNLDTFTKMHKLRFLKFYNSISEGKSKCMVSNCQG-PI-LAKVRYFHWDGYPLTSLPSN-I-Y 179 (198)
Q Consensus 104 ~~v~~i~l~~~~~~~~~~~~~~f~~m~~Lr~L~l~~~~~~~~~~~~~~lp~~-l~-l~~Lr~L~~~~~~l~~LP~~-~-~ 179 (198)
..++.+.+.-... ..+++.+|.++.+|+.|++.+.. ...+|.+ +. +++|+.|++.++.+..+|.. | .
T Consensus 76 ~~L~~L~Ls~n~l--~~~~~~~~~~l~~L~~L~L~~N~-------l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~ 146 (208)
T 2o6s_A 76 TSLTYLNLSTNQL--QSLPNGVFDKLTQLKELALNTNQ-------LQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDR 146 (208)
T ss_dssp TTCCEEECCSSCC--CCCCTTTTTTCTTCCEEECCSSC-------CCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTT
T ss_pred CCcCEEECCCCcC--CccCHhHhcCccCCCEEEcCCCc-------CcccCHhHhccCCcCCEEECCCCccceeCHHHhcc
Confidence 4556555543332 35667788999999999998763 3456654 56 89999999999999888876 5 5
Q ss_pred CCCceEEEcCCCCcc
Q 046172 180 PDKLVFLEIPDSNIE 194 (198)
Q Consensus 180 l~~L~~L~L~~S~i~ 194 (198)
+.+|++|+|+++.+.
T Consensus 147 l~~L~~L~l~~N~~~ 161 (208)
T 2o6s_A 147 LTSLQYIWLHDNPWD 161 (208)
T ss_dssp CTTCCEEECCSCCBC
T ss_pred CCCccEEEecCCCee
Confidence 899999999987653
No 18
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=98.04 E-value=4.1e-06 Score=77.26 Aligned_cols=69 Identities=20% Similarity=0.227 Sum_probs=55.0
Q ss_pred ccChhhhcCCccccEEEEecccccCCCccccccCCCCc-cCCcceEEeCCCCCCCCCCCC-CCCCceEEEcCCCCcccC
Q 046172 120 GLNLDTFTKMHKLRFLKFYNSISEGKSKCMVSNCQGPI-LAKVRYFHWDGYPLTSLPSNI-YPDKLVFLEIPDSNIEQL 196 (198)
Q Consensus 120 ~~~~~~f~~m~~Lr~L~l~~~~~~~~~~~~~~lp~~l~-l~~Lr~L~~~~~~l~~LP~~~-~l~~L~~L~L~~S~i~~L 196 (198)
.++...| ++.+|+.|++.++. ...+|.++. +++|++|+++++.+..+|..| .+.+|++|+|+++.|..+
T Consensus 238 ~l~~~~~-~l~~L~~L~Ls~N~-------l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~l 308 (727)
T 4b8c_D 238 NISANIF-KYDFLTRLYLNGNS-------LTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYFYFFDNMVTTL 308 (727)
T ss_dssp CCCGGGG-GCCSCSCCBCTTSC-------CSCCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTCSEEECCSSCCCCC
T ss_pred CCChhhc-CCCCCCEEEeeCCc-------CcccChhhhCCCCCCEEeCcCCcCCccChhhcCCCCCCEEECCCCCCCcc
Confidence 4455554 77778888877653 447888888 999999999999999999988 699999999999888654
No 19
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=98.03 E-value=1.6e-05 Score=62.32 Aligned_cols=84 Identities=11% Similarity=0.122 Sum_probs=64.6
Q ss_pred cceEEEEeeCCcccccccChhhhcCCccccEEEEecccccCCCccccccCC-CCc-cCCcceEEeCCCCCCCC-CCCC-C
Q 046172 104 EKIEGICFDMSKVKQIGLNLDTFTKMHKLRFLKFYNSISEGKSKCMVSNCQ-GPI-LAKVRYFHWDGYPLTSL-PSNI-Y 179 (198)
Q Consensus 104 ~~v~~i~l~~~~~~~~~~~~~~f~~m~~Lr~L~l~~~~~~~~~~~~~~lp~-~l~-l~~Lr~L~~~~~~l~~L-P~~~-~ 179 (198)
..++.+.+.-.. -..+++.+|.++.+|+.|++.+.. ...+|. .+. +++|++|++.++.+..+ |..| .
T Consensus 57 ~~L~~L~L~~N~--i~~i~~~~~~~l~~L~~L~Ls~N~-------l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~ 127 (220)
T 2v70_A 57 PQLRKINFSNNK--ITDIEEGAFEGASGVNEILLTSNR-------LENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIG 127 (220)
T ss_dssp TTCCEEECCSSC--CCEECTTTTTTCTTCCEEECCSSC-------CCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTT
T ss_pred CCCCEEECCCCc--CCEECHHHhCCCCCCCEEECCCCc-------cCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCC
Confidence 345555554332 234667799999999999998863 445555 466 99999999999999988 5667 6
Q ss_pred CCCceEEEcCCCCcccC
Q 046172 180 PDKLVFLEIPDSNIEQL 196 (198)
Q Consensus 180 l~~L~~L~L~~S~i~~L 196 (198)
+.+|++|+|++++|..+
T Consensus 128 l~~L~~L~L~~N~l~~~ 144 (220)
T 2v70_A 128 LSSVRLLSLYDNQITTV 144 (220)
T ss_dssp CTTCSEEECTTSCCCCB
T ss_pred CccCCEEECCCCcCCEE
Confidence 99999999999988754
No 20
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=98.02 E-value=8.4e-06 Score=72.24 Aligned_cols=69 Identities=17% Similarity=0.181 Sum_probs=38.1
Q ss_pred ccChhhhcCCccccEEEEecccccCCCccccccCC-CCc-cCCcceEEeCCCCCCCCCCC-C-CCCCceEEEcCCCCccc
Q 046172 120 GLNLDTFTKMHKLRFLKFYNSISEGKSKCMVSNCQ-GPI-LAKVRYFHWDGYPLTSLPSN-I-YPDKLVFLEIPDSNIEQ 195 (198)
Q Consensus 120 ~~~~~~f~~m~~Lr~L~l~~~~~~~~~~~~~~lp~-~l~-l~~Lr~L~~~~~~l~~LP~~-~-~l~~L~~L~L~~S~i~~ 195 (198)
.+++.+|.++++|++|+++++. ...+|. .+. +++|++|+++++.++.+|.. | .+.+|++|+|++++++.
T Consensus 66 ~l~~~~f~~l~~L~~L~Ls~N~-------i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N~l~~ 138 (635)
T 4g8a_A 66 HLGSYSFFSFPELQVLDLSRCE-------IQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLAS 138 (635)
T ss_dssp EECTTTTTTCTTCCEEECTTCC-------CCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECTTSCCCC
T ss_pred CCCHHHHhCCCCCCEEECCCCc-------CCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECCCCcCCC
Confidence 3445566666666666665542 233433 344 66666666666666666543 4 36666666666655543
No 21
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=98.02 E-value=3.7e-06 Score=61.57 Aligned_cols=82 Identities=15% Similarity=0.186 Sum_probs=58.6
Q ss_pred cceEEEEeeCCcccccccChhhhcCCccccEEEEecccccCCCccccc-cCCCCc-cCCcceEEeCCCCCCCCC--CCC-
Q 046172 104 EKIEGICFDMSKVKQIGLNLDTFTKMHKLRFLKFYNSISEGKSKCMVS-NCQGPI-LAKVRYFHWDGYPLTSLP--SNI- 178 (198)
Q Consensus 104 ~~v~~i~l~~~~~~~~~~~~~~f~~m~~Lr~L~l~~~~~~~~~~~~~~-lp~~l~-l~~Lr~L~~~~~~l~~LP--~~~- 178 (198)
..++.+.+.-+....+ ..|.++++|+.|++.++. ... +|..+. +++|++|++.++.+..+| ..+
T Consensus 42 ~~L~~L~l~~n~l~~~----~~~~~l~~L~~L~Ls~n~-------i~~~~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~ 110 (149)
T 2je0_A 42 EELEFLSTINVGLTSI----ANLPKLNKLKKLELSDNR-------VSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLK 110 (149)
T ss_dssp TTCCEEECTTSCCCCC----TTCCCCTTCCEEECCSSC-------CCSCTHHHHHHCTTCCEEECTTSCCCSHHHHGGGG
T ss_pred CCCcEEECcCCCCCCc----hhhhcCCCCCEEECCCCc-------ccchHHHHhhhCCCCCEEECCCCcCCChHHHHHHh
Confidence 4556555543332222 678888999999998763 223 566666 888999999999888876 666
Q ss_pred CCCCceEEEcCCCCcccC
Q 046172 179 YPDKLVFLEIPDSNIEQL 196 (198)
Q Consensus 179 ~l~~L~~L~L~~S~i~~L 196 (198)
.+.+|++|+++++.+..+
T Consensus 111 ~l~~L~~L~l~~N~l~~~ 128 (149)
T 2je0_A 111 KLENLKSLDLFNCEVTNL 128 (149)
T ss_dssp GCTTCCEEECTTCGGGGS
T ss_pred hCCCCCEEeCcCCcccch
Confidence 688999999998887643
No 22
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=98.02 E-value=1.8e-05 Score=62.99 Aligned_cols=70 Identities=23% Similarity=0.244 Sum_probs=51.5
Q ss_pred ccChhhhcCCccccEEEEecccccCCCccccccCC-CCc-cCCcceEEeCCCCCCCCCCC-C-CCCCceEEEcCCCCccc
Q 046172 120 GLNLDTFTKMHKLRFLKFYNSISEGKSKCMVSNCQ-GPI-LAKVRYFHWDGYPLTSLPSN-I-YPDKLVFLEIPDSNIEQ 195 (198)
Q Consensus 120 ~~~~~~f~~m~~Lr~L~l~~~~~~~~~~~~~~lp~-~l~-l~~Lr~L~~~~~~l~~LP~~-~-~l~~L~~L~L~~S~i~~ 195 (198)
.+++.+|.++++|+.|++.+.. ...+|. .+. +++|++|++.++.+..+|.. | .+.+|++|+|++++|..
T Consensus 73 ~~~~~~~~~l~~L~~L~L~~n~-------l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~ 145 (251)
T 3m19_A 73 TLSAGVFDDLTELGTLGLANNQ-------LASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQS 145 (251)
T ss_dssp CCCTTTTTTCTTCCEEECTTSC-------CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC
T ss_pred ccCHhHhccCCcCCEEECCCCc-------ccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCc
Confidence 3556677778888888877653 345554 445 88888888888888888876 4 58889999988888764
Q ss_pred C
Q 046172 196 L 196 (198)
Q Consensus 196 L 196 (198)
+
T Consensus 146 ~ 146 (251)
T 3m19_A 146 I 146 (251)
T ss_dssp C
T ss_pred c
Confidence 3
No 23
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=98.01 E-value=1.1e-05 Score=71.61 Aligned_cols=83 Identities=12% Similarity=0.186 Sum_probs=58.2
Q ss_pred cceEEEEeeCCcccccccChhhhcCCccccEEEEecccccCCCcccccc-CCCCc-cCCcceEEeCCCCCCCCCCCCCCC
Q 046172 104 EKIEGICFDMSKVKQIGLNLDTFTKMHKLRFLKFYNSISEGKSKCMVSN-CQGPI-LAKVRYFHWDGYPLTSLPSNIYPD 181 (198)
Q Consensus 104 ~~v~~i~l~~~~~~~~~~~~~~f~~m~~Lr~L~l~~~~~~~~~~~~~~l-p~~l~-l~~Lr~L~~~~~~l~~LP~~~~l~ 181 (198)
..++.+.+.-.. -..+++.+|.++++|+.|++.++. ...+ |+.+. +++|++|+++++.+.++|.. .+.
T Consensus 52 ~~L~~L~Ls~N~--i~~~~~~~~~~l~~L~~L~Ls~N~-------l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~-~l~ 121 (562)
T 3a79_B 52 PRTKALSLSQNS--ISELRMPDISFLSELRVLRLSHNR-------IRSLDFHVFLFNQDLEYLDVSHNRLQNISCC-PMA 121 (562)
T ss_dssp TTCCEEECCSSC--CCCCCGGGTTTCTTCCEEECCSCC-------CCEECTTTTTTCTTCCEEECTTSCCCEECSC-CCT
T ss_pred CCcCEEECCCCC--ccccChhhhccCCCccEEECCCCC-------CCcCCHHHhCCCCCCCEEECCCCcCCccCcc-ccc
Confidence 345555443332 234566788888888888887753 3344 56677 88888888888888888877 788
Q ss_pred CceEEEcCCCCcccC
Q 046172 182 KLVFLEIPDSNIEQL 196 (198)
Q Consensus 182 ~L~~L~L~~S~i~~L 196 (198)
+|++|+|+++++..+
T Consensus 122 ~L~~L~Ls~N~l~~l 136 (562)
T 3a79_B 122 SLRHLDLSFNDFDVL 136 (562)
T ss_dssp TCSEEECCSSCCSBC
T ss_pred cCCEEECCCCCcccc
Confidence 888888888877654
No 24
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=98.00 E-value=1.4e-05 Score=61.24 Aligned_cols=67 Identities=9% Similarity=0.195 Sum_probs=39.4
Q ss_pred cChhhhcCCccccEEEEecccccCCCccccccCC-CCc-cCCcceEEeCCCCCCCC-CCCC-CCCCceEEEcCCCCcc
Q 046172 121 LNLDTFTKMHKLRFLKFYNSISEGKSKCMVSNCQ-GPI-LAKVRYFHWDGYPLTSL-PSNI-YPDKLVFLEIPDSNIE 194 (198)
Q Consensus 121 ~~~~~f~~m~~Lr~L~l~~~~~~~~~~~~~~lp~-~l~-l~~Lr~L~~~~~~l~~L-P~~~-~l~~L~~L~L~~S~i~ 194 (198)
+.+.+|.++.+|+.|++.+.. ...+|. .+. +++|++|+++++.+..+ |..| .+.+|++|+|+++.+.
T Consensus 69 ~~~~~~~~l~~L~~L~Ls~N~-------l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 139 (192)
T 1w8a_A 69 IEPNAFEGASHIQELQLGENK-------IKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN 139 (192)
T ss_dssp BCTTTTTTCTTCCEEECCSCC-------CCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred cCHhHcCCcccCCEEECCCCc-------CCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCcc
Confidence 445566666666666665542 233333 355 66777777777666654 4445 4667777777666553
No 25
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=97.99 E-value=2e-05 Score=60.61 Aligned_cols=67 Identities=18% Similarity=0.210 Sum_probs=48.1
Q ss_pred ccChhhhcCCccccEEEEecccccCCCccccccC-CCCc-cCCcceEEeCCCCCCCCCCC-C-CCCCceEEEcCCCCc
Q 046172 120 GLNLDTFTKMHKLRFLKFYNSISEGKSKCMVSNC-QGPI-LAKVRYFHWDGYPLTSLPSN-I-YPDKLVFLEIPDSNI 193 (198)
Q Consensus 120 ~~~~~~f~~m~~Lr~L~l~~~~~~~~~~~~~~lp-~~l~-l~~Lr~L~~~~~~l~~LP~~-~-~l~~L~~L~L~~S~i 193 (198)
.+++.+|.++.+|+.|++++.. ...+| ..+. +++|++|++.++.+..+|.. | .+.+|..|+|.++.+
T Consensus 68 ~i~~~~f~~l~~L~~L~Ls~N~-------l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~ 138 (193)
T 2wfh_A 68 TLSNQSFSNMTQLLTLILSYNR-------LRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPL 138 (193)
T ss_dssp CCCTTTTTTCTTCCEEECCSSC-------CCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCE
T ss_pred EeCHhHccCCCCCCEEECCCCc-------cCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCe
Confidence 4556677778888888777653 33444 3566 88888888888888888875 5 578888888887765
No 26
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=97.99 E-value=2.2e-05 Score=58.46 Aligned_cols=81 Identities=12% Similarity=0.157 Sum_probs=50.3
Q ss_pred cceEEEEeeCCcccccccChhhhcCCccccEEEEecccccCCCccccc-cCCCCc-cCCcceEEeCCCCCCCCC--CCC-
Q 046172 104 EKIEGICFDMSKVKQIGLNLDTFTKMHKLRFLKFYNSISEGKSKCMVS-NCQGPI-LAKVRYFHWDGYPLTSLP--SNI- 178 (198)
Q Consensus 104 ~~v~~i~l~~~~~~~~~~~~~~f~~m~~Lr~L~l~~~~~~~~~~~~~~-lp~~l~-l~~Lr~L~~~~~~l~~LP--~~~- 178 (198)
..++.+.+.-.....+ ..|.++++|+.|++.++. ... +|..+. +++|++|++.++.+..+| ..+
T Consensus 49 ~~L~~L~l~~n~l~~~----~~~~~l~~L~~L~Ls~N~-------l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~ 117 (168)
T 2ell_A 49 VNLEFLSLINVGLISV----SNLPKLPKLKKLELSENR-------IFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLK 117 (168)
T ss_dssp GGCCEEEEESSCCCCC----SSCCCCSSCCEEEEESCC-------CCSCCCHHHHHCTTCCEEECBSSSCCSSGGGGGGS
T ss_pred CCCCEEeCcCCCCCCh----hhhccCCCCCEEECcCCc-------CchHHHHHHhhCCCCCEEeccCCccCcchhHHHHh
Confidence 4555555544433222 667777777777777653 222 455555 777777777777777766 455
Q ss_pred CCCCceEEEcCCCCccc
Q 046172 179 YPDKLVFLEIPDSNIEQ 195 (198)
Q Consensus 179 ~l~~L~~L~L~~S~i~~ 195 (198)
.+.+|++|+|+++.+..
T Consensus 118 ~l~~L~~L~l~~N~l~~ 134 (168)
T 2ell_A 118 KLECLKSLDLFNCEVTN 134 (168)
T ss_dssp SCSCCCEEECCSSGGGT
T ss_pred cCCCCCEEEeeCCcCcc
Confidence 47777777777776654
No 27
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=97.98 E-value=2e-05 Score=64.43 Aligned_cols=69 Identities=17% Similarity=0.204 Sum_probs=44.6
Q ss_pred ccChhhhcCCccccEEEEecccccCCCccccccCCC-Cc-cCCcceEEeCCCCCCCCCCCC--CCCCceEEEcCCCCccc
Q 046172 120 GLNLDTFTKMHKLRFLKFYNSISEGKSKCMVSNCQG-PI-LAKVRYFHWDGYPLTSLPSNI--YPDKLVFLEIPDSNIEQ 195 (198)
Q Consensus 120 ~~~~~~f~~m~~Lr~L~l~~~~~~~~~~~~~~lp~~-l~-l~~Lr~L~~~~~~l~~LP~~~--~l~~L~~L~L~~S~i~~ 195 (198)
.+++.+|.++.+|+.|++.+.. ...+|.+ +. +++|+.|+++++.+.++|..+ .+.+|++|+|++++++.
T Consensus 114 ~l~~~~~~~l~~L~~L~L~~N~-------l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~ 186 (290)
T 1p9a_G 114 SLPLGALRGLGELQELYLKGNE-------LKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYT 186 (290)
T ss_dssp CCCSSTTTTCTTCCEEECTTSC-------CCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCCC
T ss_pred ccCHHHHcCCCCCCEEECCCCC-------CCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCCc
Confidence 4455667777777777776652 3345444 34 777777777777777777653 36777777777776654
No 28
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=97.96 E-value=3.1e-05 Score=59.61 Aligned_cols=82 Identities=11% Similarity=0.188 Sum_probs=63.4
Q ss_pred ceEEEEeeCCcccccccChhhhcCCccccEEEEecccccCCCccccccC-CCCc-cCCcceEEeCCCCCCCCCCC-C-CC
Q 046172 105 KIEGICFDMSKVKQIGLNLDTFTKMHKLRFLKFYNSISEGKSKCMVSNC-QGPI-LAKVRYFHWDGYPLTSLPSN-I-YP 180 (198)
Q Consensus 105 ~v~~i~l~~~~~~~~~~~~~~f~~m~~Lr~L~l~~~~~~~~~~~~~~lp-~~l~-l~~Lr~L~~~~~~l~~LP~~-~-~l 180 (198)
.++.+.+.-.... .++ .+|.++.+|+.|++++.. ...+| ..+. +++|+.|+++++.+..+|.. | .+
T Consensus 32 ~l~~L~L~~n~i~--~ip-~~~~~l~~L~~L~Ls~N~-------i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l 101 (193)
T 2wfh_A 32 DVTELYLDGNQFT--LVP-KELSNYKHLTLIDLSNNR-------ISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGL 101 (193)
T ss_dssp TCCEEECCSSCCC--SCC-GGGGGCTTCCEEECCSSC-------CCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTC
T ss_pred CCCEEECCCCcCc--hhH-HHhhcccCCCEEECCCCc-------CCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCC
Confidence 4555555444332 333 789999999999998864 44555 4577 99999999999999998864 6 69
Q ss_pred CCceEEEcCCCCcccC
Q 046172 181 DKLVFLEIPDSNIEQL 196 (198)
Q Consensus 181 ~~L~~L~L~~S~i~~L 196 (198)
.+|++|+|++++|..+
T Consensus 102 ~~L~~L~L~~N~l~~~ 117 (193)
T 2wfh_A 102 KSLRLLSLHGNDISVV 117 (193)
T ss_dssp TTCCEEECCSSCCCBC
T ss_pred CCCCEEECCCCCCCee
Confidence 9999999999998753
No 29
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=97.96 E-value=2.5e-05 Score=62.85 Aligned_cols=70 Identities=21% Similarity=0.270 Sum_probs=49.5
Q ss_pred ccChhhhcCCccccEEEEecccccCCCccccccCCC-Cc-cCCcceEEeCCCCCCCCCCC-C-CCCCceEEEcCCCCccc
Q 046172 120 GLNLDTFTKMHKLRFLKFYNSISEGKSKCMVSNCQG-PI-LAKVRYFHWDGYPLTSLPSN-I-YPDKLVFLEIPDSNIEQ 195 (198)
Q Consensus 120 ~~~~~~f~~m~~Lr~L~l~~~~~~~~~~~~~~lp~~-l~-l~~Lr~L~~~~~~l~~LP~~-~-~l~~L~~L~L~~S~i~~ 195 (198)
.+++.+|.++++|+.|++.+.. ...+|.+ +. +++|++|++.++.+..+|.. | .+.+|++|+|+++++..
T Consensus 75 ~i~~~~~~~l~~L~~L~l~~n~-------l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~ 147 (270)
T 2o6q_A 75 TLPAGIFKELKNLETLWVTDNK-------LQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQS 147 (270)
T ss_dssp CCCTTTTSSCTTCCEEECCSSC-------CCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC
T ss_pred eeChhhhcCCCCCCEEECCCCc-------CCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCc
Confidence 4556667777777777776652 3455544 45 88888888888888877765 4 58888888888887764
Q ss_pred C
Q 046172 196 L 196 (198)
Q Consensus 196 L 196 (198)
+
T Consensus 148 ~ 148 (270)
T 2o6q_A 148 L 148 (270)
T ss_dssp C
T ss_pred c
Confidence 3
No 30
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=97.96 E-value=1.8e-05 Score=70.47 Aligned_cols=68 Identities=18% Similarity=0.061 Sum_probs=48.6
Q ss_pred ccChhhhcCCccccEEEEecccccCCCcccccc-CCCCc-cCCcceEEeCCCCCCCCC-CCC-CCCCceEEEcCCCCcc
Q 046172 120 GLNLDTFTKMHKLRFLKFYNSISEGKSKCMVSN-CQGPI-LAKVRYFHWDGYPLTSLP-SNI-YPDKLVFLEIPDSNIE 194 (198)
Q Consensus 120 ~~~~~~f~~m~~Lr~L~l~~~~~~~~~~~~~~l-p~~l~-l~~Lr~L~~~~~~l~~LP-~~~-~l~~L~~L~L~~S~i~ 194 (198)
.+.+.+|.++++|+.|++.++. ...+ |+.+. +++|++|++.++.+..+| ..| .+.+|++|+|+++++.
T Consensus 70 ~i~~~~~~~l~~L~~L~Ls~n~-------l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 141 (606)
T 3vq2_A 70 TIEDKAWHGLHHLSNLILTGNP-------IQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIH 141 (606)
T ss_dssp EECTTTTTTCTTCCEEECTTCC-------CCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCC
T ss_pred ccCHHHhhchhhcCEeECCCCc-------ccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCccc
Confidence 3456677777777777776653 3334 67777 888888888888887777 445 5888888888887765
No 31
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=97.96 E-value=2e-05 Score=60.47 Aligned_cols=83 Identities=8% Similarity=0.114 Sum_probs=63.1
Q ss_pred ceEEEEeeCCcccccccCh-hhhcCCccccEEEEecccccCCCcccccc-CCCCc-cCCcceEEeCCCCCCCCCCC-C-C
Q 046172 105 KIEGICFDMSKVKQIGLNL-DTFTKMHKLRFLKFYNSISEGKSKCMVSN-CQGPI-LAKVRYFHWDGYPLTSLPSN-I-Y 179 (198)
Q Consensus 105 ~v~~i~l~~~~~~~~~~~~-~~f~~m~~Lr~L~l~~~~~~~~~~~~~~l-p~~l~-l~~Lr~L~~~~~~l~~LP~~-~-~ 179 (198)
.++.+.+.-... ..+++ .+|.++++|+.|++.+.. ...+ |..+. +++|++|+++++.+..+|.. | .
T Consensus 30 ~l~~L~l~~n~i--~~~~~~~~~~~l~~L~~L~Ls~N~-------l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~ 100 (192)
T 1w8a_A 30 HTTELLLNDNEL--GRISSDGLFGRLPHLVKLELKRNQ-------LTGIEPNAFEGASHIQELQLGENKIKEISNKMFLG 100 (192)
T ss_dssp TCSEEECCSCCC--CSBCCSCSGGGCTTCCEEECCSSC-------CCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTT
T ss_pred CCCEEECCCCcC--CccCCccccccCCCCCEEECCCCC-------CCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcC
Confidence 455554443322 23444 369999999999998864 3344 77888 99999999999999988866 6 6
Q ss_pred CCCceEEEcCCCCcccC
Q 046172 180 PDKLVFLEIPDSNIEQL 196 (198)
Q Consensus 180 l~~L~~L~L~~S~i~~L 196 (198)
+.+|++|+|++++|..+
T Consensus 101 l~~L~~L~L~~N~l~~~ 117 (192)
T 1w8a_A 101 LHQLKTLNLYDNQISCV 117 (192)
T ss_dssp CTTCCEEECCSSCCCEE
T ss_pred CCCCCEEECCCCcCCee
Confidence 99999999999988643
No 32
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=97.95 E-value=2.8e-05 Score=62.56 Aligned_cols=67 Identities=18% Similarity=0.252 Sum_probs=31.9
Q ss_pred cChhhhcCCccccEEEEecccccCCCccccccCCC-Cc-cCCcceEEeCCCCCCCCCCC-C-CCCCceEEEcCCCCcc
Q 046172 121 LNLDTFTKMHKLRFLKFYNSISEGKSKCMVSNCQG-PI-LAKVRYFHWDGYPLTSLPSN-I-YPDKLVFLEIPDSNIE 194 (198)
Q Consensus 121 ~~~~~f~~m~~Lr~L~l~~~~~~~~~~~~~~lp~~-l~-l~~Lr~L~~~~~~l~~LP~~-~-~l~~L~~L~L~~S~i~ 194 (198)
+++.+|.++++|+.|++.+.. ...+|.+ +. +++|+.|++.++.+..+|.. | .+.+|++|+|++++++
T Consensus 124 ~~~~~~~~l~~L~~L~Ls~n~-------l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~ 194 (270)
T 2o6q_A 124 LPPRVFDSLTKLTYLSLGYNE-------LQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLK 194 (270)
T ss_dssp CCTTTTTTCTTCCEEECCSSC-------CCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCS
T ss_pred eCHHHhCcCcCCCEEECCCCc-------CCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCC
Confidence 334445555555555555432 2233332 33 55555555555555555443 3 3455555555555443
No 33
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.94 E-value=1.3e-05 Score=71.99 Aligned_cols=64 Identities=14% Similarity=0.174 Sum_probs=41.3
Q ss_pred hhhcCCccccEEEEecccccCCCccccccCCCCc-cCCcceEEeCCCCCCCC--CCCC-CCCCceEEEcCCCCccc
Q 046172 124 DTFTKMHKLRFLKFYNSISEGKSKCMVSNCQGPI-LAKVRYFHWDGYPLTSL--PSNI-YPDKLVFLEIPDSNIEQ 195 (198)
Q Consensus 124 ~~f~~m~~Lr~L~l~~~~~~~~~~~~~~lp~~l~-l~~Lr~L~~~~~~l~~L--P~~~-~l~~L~~L~L~~S~i~~ 195 (198)
..|.+|++|+.|++.+.. ...+| ++. +++|+.|+++++.+..+ |..| .+.+|++|+|+++.+..
T Consensus 480 ~~~~~l~~L~~L~Ls~N~-------l~~lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~ 547 (567)
T 1dce_A 480 PALAALRCLEVLQASDNA-------LENVD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ 547 (567)
T ss_dssp GGGGGCTTCCEEECCSSC-------CCCCG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGG
T ss_pred hhhhcCCCCCEEECCCCC-------CCCCc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCC
Confidence 356666666666666542 33456 566 77777777777777666 6666 47777777777776653
No 34
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=97.93 E-value=1e-05 Score=70.73 Aligned_cols=66 Identities=14% Similarity=0.122 Sum_probs=31.2
Q ss_pred cChhhhcCCccccEEEEecccccCCCcccccc-CCCCc-cCCcceEEeCCCCCCCCCCCCCCCCceEEEcCCCCcc
Q 046172 121 LNLDTFTKMHKLRFLKFYNSISEGKSKCMVSN-CQGPI-LAKVRYFHWDGYPLTSLPSNIYPDKLVFLEIPDSNIE 194 (198)
Q Consensus 121 ~~~~~f~~m~~Lr~L~l~~~~~~~~~~~~~~l-p~~l~-l~~Lr~L~~~~~~l~~LP~~~~l~~L~~L~L~~S~i~ 194 (198)
+++.+|.++++|++|++.++. ...+ |+.+. +++|++|+++++.+..+|.. .+.+|++|+|+++++.
T Consensus 36 ~~~~~~~~l~~L~~L~Ls~n~-------l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~-~l~~L~~L~L~~N~l~ 103 (520)
T 2z7x_B 36 LWTSDILSLSKLRILIISHNR-------IQYLDISVFKFNQELEYLDLSHNKLVKISCH-PTVNLKHLDLSFNAFD 103 (520)
T ss_dssp CCHHHHTTCTTCCEEECCSSC-------CCEEEGGGGTTCTTCCEEECCSSCCCEEECC-CCCCCSEEECCSSCCS
T ss_pred cChhhccccccccEEecCCCc-------cCCcChHHhhcccCCCEEecCCCceeecCcc-ccCCccEEeccCCccc
Confidence 334455555555555555432 1122 34444 55555555555555455544 4455555555554443
No 35
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=97.93 E-value=3.8e-05 Score=57.74 Aligned_cols=84 Identities=19% Similarity=0.230 Sum_probs=65.5
Q ss_pred cceEEEEeeCCcccccccChhhhcCCccccEEEEecccccCCCccccccCCC-Cc-cCCcceEEeCCCCCCCCCCC-C-C
Q 046172 104 EKIEGICFDMSKVKQIGLNLDTFTKMHKLRFLKFYNSISEGKSKCMVSNCQG-PI-LAKVRYFHWDGYPLTSLPSN-I-Y 179 (198)
Q Consensus 104 ~~v~~i~l~~~~~~~~~~~~~~f~~m~~Lr~L~l~~~~~~~~~~~~~~lp~~-l~-l~~Lr~L~~~~~~l~~LP~~-~-~ 179 (198)
..++.+.+.-... ..+++.+|.++.+|+.|++.+.. ...+|.+ +. +++|++|++.++.+..+|.. | .
T Consensus 28 ~~l~~L~l~~n~l--~~~~~~~~~~l~~L~~L~l~~n~-------l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~ 98 (177)
T 2o6r_A 28 SSATRLELESNKL--QSLPHGVFDKLTQLTKLSLSQNQ-------IQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDK 98 (177)
T ss_dssp TTCSEEECCSSCC--CCCCTTTTTTCTTCSEEECCSSC-------CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT
T ss_pred CCCcEEEeCCCcc--cEeCHHHhcCcccccEEECCCCc-------ceEeChhHccCCCccCEEECCCCCccccCHHHhhC
Confidence 3456555544332 35677889999999999998763 4466665 56 99999999999999999976 4 6
Q ss_pred CCCceEEEcCCCCcccC
Q 046172 180 PDKLVFLEIPDSNIEQL 196 (198)
Q Consensus 180 l~~L~~L~L~~S~i~~L 196 (198)
+.+|++|+|+++++..+
T Consensus 99 l~~L~~L~l~~N~l~~~ 115 (177)
T 2o6r_A 99 LTQLKELALDTNQLKSV 115 (177)
T ss_dssp CTTCCEEECCSSCCSCC
T ss_pred CcccCEEECcCCcceEe
Confidence 99999999999988653
No 36
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=97.91 E-value=2.9e-05 Score=64.01 Aligned_cols=68 Identities=18% Similarity=0.228 Sum_probs=48.9
Q ss_pred ccChhhhcCCccccEEEEecccccCCCcccccc-CCCCc-cCCcceEEeCCCCCCCCCCCCCCCCceEEEcCCCCccc
Q 046172 120 GLNLDTFTKMHKLRFLKFYNSISEGKSKCMVSN-CQGPI-LAKVRYFHWDGYPLTSLPSNIYPDKLVFLEIPDSNIEQ 195 (198)
Q Consensus 120 ~~~~~~f~~m~~Lr~L~l~~~~~~~~~~~~~~l-p~~l~-l~~Lr~L~~~~~~l~~LP~~~~l~~L~~L~L~~S~i~~ 195 (198)
.+++.+|.++++|+.|++.++. ...+ |..+. +++|++|++.++.+..+|..+. .+|++|+++++++..
T Consensus 66 ~~~~~~~~~l~~L~~L~L~~n~-------l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~-~~L~~L~l~~n~l~~ 135 (330)
T 1xku_A 66 EIKDGDFKNLKNLHTLILINNK-------ISKISPGAFAPLVKLERLYLSKNQLKELPEKMP-KTLQELRVHENEITK 135 (330)
T ss_dssp CBCTTTTTTCTTCCEEECCSSC-------CCCBCTTTTTTCTTCCEEECCSSCCSBCCSSCC-TTCCEEECCSSCCCB
T ss_pred EeChhhhccCCCCCEEECCCCc-------CCeeCHHHhcCCCCCCEEECCCCcCCccChhhc-ccccEEECCCCcccc
Confidence 4556678888888888887653 2333 67777 8888888888888888887654 577777777766653
No 37
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=97.90 E-value=2.4e-05 Score=69.57 Aligned_cols=69 Identities=14% Similarity=0.145 Sum_probs=52.9
Q ss_pred ccChhhhcCCccccEEEEecccccCCCccccccC-CCCc-cCCcceEEeCCCCCC--CCCCCC-CCCCceEEEcCCCCcc
Q 046172 120 GLNLDTFTKMHKLRFLKFYNSISEGKSKCMVSNC-QGPI-LAKVRYFHWDGYPLT--SLPSNI-YPDKLVFLEIPDSNIE 194 (198)
Q Consensus 120 ~~~~~~f~~m~~Lr~L~l~~~~~~~~~~~~~~lp-~~l~-l~~Lr~L~~~~~~l~--~LP~~~-~l~~L~~L~L~~S~i~ 194 (198)
.+.+.+|.++++|++|++.++. ...+| ..+. +++|++|++.++.+. .+|..| .+.+|++|+|+++++.
T Consensus 94 ~~~p~~~~~l~~L~~L~L~~n~-------l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~ 166 (606)
T 3vq2_A 94 SFSPGSFSGLTSLENLVAVETK-------LASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQ 166 (606)
T ss_dssp CCCTTSSTTCTTCCEEECTTSC-------CCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCC
T ss_pred ccChhhcCCcccCCEEEccCCc-------cccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcce
Confidence 4557788888888888887763 33454 5677 888888888888876 478877 6888888888888776
Q ss_pred c
Q 046172 195 Q 195 (198)
Q Consensus 195 ~ 195 (198)
.
T Consensus 167 ~ 167 (606)
T 3vq2_A 167 T 167 (606)
T ss_dssp E
T ss_pred e
Confidence 4
No 38
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=97.89 E-value=3.4e-05 Score=63.64 Aligned_cols=69 Identities=12% Similarity=0.208 Sum_probs=53.0
Q ss_pred cChhhhcCCccccEEEEecccccCCCcccccc-CCCCc-cCCcceEEeCCCCCCCCCCCC-CCCCceEEEcCCCCcccC
Q 046172 121 LNLDTFTKMHKLRFLKFYNSISEGKSKCMVSN-CQGPI-LAKVRYFHWDGYPLTSLPSNI-YPDKLVFLEIPDSNIEQL 196 (198)
Q Consensus 121 ~~~~~f~~m~~Lr~L~l~~~~~~~~~~~~~~l-p~~l~-l~~Lr~L~~~~~~l~~LP~~~-~l~~L~~L~L~~S~i~~L 196 (198)
+.+.+|.++++|+.|++.++. ...+ |..+. +++|+.|++.++.+..+|..+ .+.+|++|+|++++|..+
T Consensus 207 ~~~~~~~~l~~L~~L~Ls~n~-------l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N~i~~~ 278 (330)
T 1xku_A 207 VDAASLKGLNNLAKLGLSFNS-------ISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAI 278 (330)
T ss_dssp ECTGGGTTCTTCCEEECCSSC-------CCEECTTTGGGSTTCCEEECCSSCCSSCCTTTTTCSSCCEEECCSSCCCCC
T ss_pred cCHHHhcCCCCCCEEECCCCc-------CceeChhhccCCCCCCEEECCCCcCccCChhhccCCCcCEEECCCCcCCcc
Confidence 456788889999999988753 2334 34666 888888888888888888887 588888888888887653
No 39
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=97.89 E-value=1.2e-05 Score=60.68 Aligned_cols=65 Identities=18% Similarity=0.240 Sum_probs=47.3
Q ss_pred hhhcCCccccEEEEecccccCCCccccccCCCC-c-cCCcceEEeCCCCCCCCCC--CC-CCCCceEEEcCCCCccc
Q 046172 124 DTFTKMHKLRFLKFYNSISEGKSKCMVSNCQGP-I-LAKVRYFHWDGYPLTSLPS--NI-YPDKLVFLEIPDSNIEQ 195 (198)
Q Consensus 124 ~~f~~m~~Lr~L~l~~~~~~~~~~~~~~lp~~l-~-l~~Lr~L~~~~~~l~~LP~--~~-~l~~L~~L~L~~S~i~~ 195 (198)
..|.++++|+.|++.++. ...+|.++ . +++|++|+++++.+.++|. .+ .+.+|++|+|+++.+..
T Consensus 58 ~~l~~l~~L~~L~Ls~N~-------l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~ 127 (176)
T 1a9n_A 58 DGFPLLRRLKTLLVNNNR-------ICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTN 127 (176)
T ss_dssp CCCCCCSSCCEEECCSSC-------CCEECSCHHHHCTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGG
T ss_pred cccccCCCCCEEECCCCc-------ccccCcchhhcCCCCCEEECCCCcCCcchhhHhhhcCCCCCEEEecCCCCCC
Confidence 567778888888887653 34566665 5 7788888888888877776 55 57788888888877654
No 40
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=97.88 E-value=2.3e-05 Score=65.87 Aligned_cols=70 Identities=19% Similarity=0.342 Sum_probs=47.4
Q ss_pred ccChhhhcCCccccEEEEecccccCCCcccccc-CCCCc-cCCcceEEeCCCCCCCCCCCC-----CCCCceEEEcCCCC
Q 046172 120 GLNLDTFTKMHKLRFLKFYNSISEGKSKCMVSN-CQGPI-LAKVRYFHWDGYPLTSLPSNI-----YPDKLVFLEIPDSN 192 (198)
Q Consensus 120 ~~~~~~f~~m~~Lr~L~l~~~~~~~~~~~~~~l-p~~l~-l~~Lr~L~~~~~~l~~LP~~~-----~l~~L~~L~L~~S~ 192 (198)
.+++.+|.++.+|+.|++.+.. ...+ |..+. +++|+.|+++++.+..+|..+ .+.+|++|+|++++
T Consensus 102 ~~~~~~~~~l~~L~~L~L~~N~-------i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~ 174 (361)
T 2xot_A 102 TLDEFLFSDLQALEVLLLYNNH-------IVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNK 174 (361)
T ss_dssp EECTTTTTTCTTCCEEECCSSC-------CCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSC
T ss_pred cCCHHHhCCCcCCCEEECCCCc-------ccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCC
Confidence 3455566677777777776542 2333 55666 888888888888888887663 37788888888887
Q ss_pred cccC
Q 046172 193 IEQL 196 (198)
Q Consensus 193 i~~L 196 (198)
|..+
T Consensus 175 l~~l 178 (361)
T 2xot_A 175 LKKL 178 (361)
T ss_dssp CCCC
T ss_pred CCcc
Confidence 7643
No 41
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=97.88 E-value=1.9e-05 Score=65.64 Aligned_cols=64 Identities=22% Similarity=0.242 Sum_probs=34.1
Q ss_pred hhhcCCccccEEEEecccccCCCccccccCCCCc-cCCcceEEeCCCC-CCCCCCCCC----------CCCceEEEcCCC
Q 046172 124 DTFTKMHKLRFLKFYNSISEGKSKCMVSNCQGPI-LAKVRYFHWDGYP-LTSLPSNIY----------PDKLVFLEIPDS 191 (198)
Q Consensus 124 ~~f~~m~~Lr~L~l~~~~~~~~~~~~~~lp~~l~-l~~Lr~L~~~~~~-l~~LP~~~~----------l~~L~~L~L~~S 191 (198)
..|.++.+|+.|++.++. ...+|.++. +++|++|++.+|. +..+|..+. +.+|++|+|+++
T Consensus 121 ~~~~~l~~L~~L~Ls~n~-------l~~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n 193 (328)
T 4fcg_A 121 DTMQQFAGLETLTLARNP-------LRALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWT 193 (328)
T ss_dssp SCGGGGTTCSEEEEESCC-------CCCCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEE
T ss_pred HHHhccCCCCEEECCCCc-------cccCcHHHhcCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCC
Confidence 344555555555555442 224555555 5566666665543 345555542 556666666655
Q ss_pred Ccc
Q 046172 192 NIE 194 (198)
Q Consensus 192 ~i~ 194 (198)
++.
T Consensus 194 ~l~ 196 (328)
T 4fcg_A 194 GIR 196 (328)
T ss_dssp CCC
T ss_pred CcC
Confidence 554
No 42
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=97.86 E-value=2.9e-05 Score=65.24 Aligned_cols=84 Identities=10% Similarity=0.123 Sum_probs=62.9
Q ss_pred cceEEEEeeCCcccccccChhhhcCCccccEEEEecccccCCCccccccCC-CCc-cCCcceEEeCCCCCCCCC-CCC-C
Q 046172 104 EKIEGICFDMSKVKQIGLNLDTFTKMHKLRFLKFYNSISEGKSKCMVSNCQ-GPI-LAKVRYFHWDGYPLTSLP-SNI-Y 179 (198)
Q Consensus 104 ~~v~~i~l~~~~~~~~~~~~~~f~~m~~Lr~L~l~~~~~~~~~~~~~~lp~-~l~-l~~Lr~L~~~~~~l~~LP-~~~-~ 179 (198)
..++.+.+.-.. --.+++.+|.++.+|+.|++.+.. ...+|. .+. +++|++|++.++.+..++ ..| .
T Consensus 64 ~~L~~L~L~~N~--i~~i~~~~~~~l~~L~~L~Ls~N~-------l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~ 134 (361)
T 2xot_A 64 TNLHSLLLSHNH--LNFISSEAFVPVPNLRYLDLSSNH-------LHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFED 134 (361)
T ss_dssp TTCCEEECCSSC--CCEECTTTTTTCTTCCEEECCSSC-------CCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTT
T ss_pred cccCEEECCCCc--CCccChhhccCCCCCCEEECCCCc-------CCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCC
Confidence 345555543332 234667789999999999998763 445655 466 999999999999998874 567 6
Q ss_pred CCCceEEEcCCCCcccC
Q 046172 180 PDKLVFLEIPDSNIEQL 196 (198)
Q Consensus 180 l~~L~~L~L~~S~i~~L 196 (198)
+.+|++|+|++++|..+
T Consensus 135 l~~L~~L~L~~N~l~~l 151 (361)
T 2xot_A 135 MAQLQKLYLSQNQISRF 151 (361)
T ss_dssp CTTCCEEECCSSCCCSC
T ss_pred cccCCEEECCCCcCCee
Confidence 99999999999988754
No 43
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=97.86 E-value=4.1e-05 Score=64.60 Aligned_cols=68 Identities=15% Similarity=0.171 Sum_probs=40.3
Q ss_pred cChhhhcCCccccEEEEecccccCCCccccccCCCC-c-cCCcceEEeCCCCCCCCCCC-C-CCCCceEEEcCCCCccc
Q 046172 121 LNLDTFTKMHKLRFLKFYNSISEGKSKCMVSNCQGP-I-LAKVRYFHWDGYPLTSLPSN-I-YPDKLVFLEIPDSNIEQ 195 (198)
Q Consensus 121 ~~~~~f~~m~~Lr~L~l~~~~~~~~~~~~~~lp~~l-~-l~~Lr~L~~~~~~l~~LP~~-~-~l~~L~~L~L~~S~i~~ 195 (198)
+++.+|.++++|+.|++.++. ...+|.++ . +++|++|++.++.+..+|.. | .+.+|++|+|+++++..
T Consensus 108 ~~~~~~~~l~~L~~L~L~~n~-------l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 179 (390)
T 3o6n_A 108 LPPHVFQNVPLLTVLVLERND-------LSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTH 179 (390)
T ss_dssp CCTTTTTTCTTCCEEECCSSC-------CCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSB
T ss_pred CCHHHhcCCCCCCEEECCCCc-------cCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCc
Confidence 445556666666666665542 34555553 4 66667777666666665443 4 46667777766666543
No 44
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=97.85 E-value=2e-05 Score=58.66 Aligned_cols=84 Identities=14% Similarity=0.193 Sum_probs=62.2
Q ss_pred cceEEEEeeCCcccccccChhhhcCCccccEEEEecccccCCCccccccCCCCc-cCCcceEEeCCCCCCC-CCCCCC-C
Q 046172 104 EKIEGICFDMSKVKQIGLNLDTFTKMHKLRFLKFYNSISEGKSKCMVSNCQGPI-LAKVRYFHWDGYPLTS-LPSNIY-P 180 (198)
Q Consensus 104 ~~v~~i~l~~~~~~~~~~~~~~f~~m~~Lr~L~l~~~~~~~~~~~~~~lp~~l~-l~~Lr~L~~~~~~l~~-LP~~~~-l 180 (198)
..++.+.+.-.......+ +..|.++++|+.|++.++. ...+ ..+. +++|++|++.++.+.. +|..+. +
T Consensus 24 ~~L~~L~l~~n~l~~~~i-~~~~~~l~~L~~L~l~~n~-------l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l 94 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKI-EGLTAEFVNLEFLSLINVG-------LISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKL 94 (168)
T ss_dssp TSCSEEECCSCBCBTTBC-SSCCGGGGGCCEEEEESSC-------CCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHC
T ss_pred ccCCEEECCCCCCChhhH-HHHHHhCCCCCEEeCcCCC-------CCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhC
Confidence 345555554433221133 3458899999999999864 2333 6677 9999999999999988 777774 9
Q ss_pred CCceEEEcCCCCcccC
Q 046172 181 DKLVFLEIPDSNIEQL 196 (198)
Q Consensus 181 ~~L~~L~L~~S~i~~L 196 (198)
.+|++|+|+++++..+
T Consensus 95 ~~L~~L~Ls~N~l~~~ 110 (168)
T 2ell_A 95 PNLTHLNLSGNKLKDI 110 (168)
T ss_dssp TTCCEEECBSSSCCSS
T ss_pred CCCCEEeccCCccCcc
Confidence 9999999999998764
No 45
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=97.85 E-value=3.1e-05 Score=66.88 Aligned_cols=67 Identities=27% Similarity=0.301 Sum_probs=32.8
Q ss_pred cChhhhcCCccccEEEEecccccCCCcccccc-CCCCc-cCCcceEEeCCCCCCCCCCC-C-CCCCceEEEcCCCCcc
Q 046172 121 LNLDTFTKMHKLRFLKFYNSISEGKSKCMVSN-CQGPI-LAKVRYFHWDGYPLTSLPSN-I-YPDKLVFLEIPDSNIE 194 (198)
Q Consensus 121 ~~~~~f~~m~~Lr~L~l~~~~~~~~~~~~~~l-p~~l~-l~~Lr~L~~~~~~l~~LP~~-~-~l~~L~~L~L~~S~i~ 194 (198)
+.+.+|.++++|+.|++.++. ...+ |..+. +++|++|++.++.+..+|.. | .+.+|++|+|++++++
T Consensus 90 ~~~~~~~~l~~L~~L~Ls~n~-------i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~ 160 (452)
T 3zyi_A 90 IQADTFRHLHHLEVLQLGRNS-------IRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIE 160 (452)
T ss_dssp ECTTTTTTCTTCCEEECCSSC-------CCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCC
T ss_pred ECHHHcCCCCCCCEEECCCCc-------cCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEECCCCCcc
Confidence 344555666666666665442 1122 23444 55555555555555555443 3 3555555555555443
No 46
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=97.85 E-value=3.5e-05 Score=63.71 Aligned_cols=64 Identities=13% Similarity=0.158 Sum_probs=34.6
Q ss_pred hhhhcCCccccEEEEecccccCCCccccccCCCCccCCcceEEeCCCCCCCCCCC-C-CCCCceEEEcCCCCcc
Q 046172 123 LDTFTKMHKLRFLKFYNSISEGKSKCMVSNCQGPILAKVRYFHWDGYPLTSLPSN-I-YPDKLVFLEIPDSNIE 194 (198)
Q Consensus 123 ~~~f~~m~~Lr~L~l~~~~~~~~~~~~~~lp~~l~l~~Lr~L~~~~~~l~~LP~~-~-~l~~L~~L~L~~S~i~ 194 (198)
+.+|.++++|+.|++.+.. ...+|..+. ++|+.|++.++.+..+|.. | .+.+|++|+|+++.++
T Consensus 95 ~~~~~~l~~L~~L~L~~n~-------l~~l~~~~~-~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~ 160 (332)
T 2ft3_A 95 EKAFSPLRKLQKLYISKNH-------LVEIPPNLP-SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLE 160 (332)
T ss_dssp GGGSTTCTTCCEEECCSSC-------CCSCCSSCC-TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCB
T ss_pred HhHhhCcCCCCEEECCCCc-------CCccCcccc-ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccc
Confidence 4455555555555554432 223444333 5566666666666666554 3 4666666666666553
No 47
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=97.84 E-value=3.2e-05 Score=63.23 Aligned_cols=63 Identities=19% Similarity=0.095 Sum_probs=47.3
Q ss_pred cCCccccEEEEecccccCCCccccccCCCCc-cCCcceEEeCCCCCCCCCCC-C-CCCCceEEEcCCCCcccC
Q 046172 127 TKMHKLRFLKFYNSISEGKSKCMVSNCQGPI-LAKVRYFHWDGYPLTSLPSN-I-YPDKLVFLEIPDSNIEQL 196 (198)
Q Consensus 127 ~~m~~Lr~L~l~~~~~~~~~~~~~~lp~~l~-l~~Lr~L~~~~~~l~~LP~~-~-~l~~L~~L~L~~S~i~~L 196 (198)
..+.+|+.|++.+. ....+|..+. +++|++|+++++.+..+|.. | .+.+|++|+|+++++..+
T Consensus 74 ~~l~~L~~L~Ls~N-------~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~ 139 (290)
T 1p9a_G 74 GTLPVLGTLDLSHN-------QLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTL 139 (290)
T ss_dssp SCCTTCCEEECCSS-------CCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCC
T ss_pred CCCCcCCEEECCCC-------cCCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCcc
Confidence 45556666666554 2456788787 88999999999999888854 6 589999999999887643
No 48
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=97.83 E-value=4.7e-05 Score=61.44 Aligned_cols=71 Identities=20% Similarity=0.226 Sum_probs=52.2
Q ss_pred ccChhhhcCCccccEEEEecccccCCCcccccc-CCCCc-cCCcceEEeCCCCCCCCC-CCC-CCCCceEEEcCCCCccc
Q 046172 120 GLNLDTFTKMHKLRFLKFYNSISEGKSKCMVSN-CQGPI-LAKVRYFHWDGYPLTSLP-SNI-YPDKLVFLEIPDSNIEQ 195 (198)
Q Consensus 120 ~~~~~~f~~m~~Lr~L~l~~~~~~~~~~~~~~l-p~~l~-l~~Lr~L~~~~~~l~~LP-~~~-~l~~L~~L~L~~S~i~~ 195 (198)
.+.+.+|.++++|+.|++.++. ....+ |..+. +++|+.|++.++.+..+| ..| .+.+|++|+|+++++..
T Consensus 70 ~~~~~~~~~l~~L~~L~l~~n~------~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 143 (285)
T 1ozn_A 70 RIDAAAFTGLALLEQLDLSDNA------QLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQA 143 (285)
T ss_dssp EECTTTTTTCTTCCEEECCSCT------TCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCC
T ss_pred eeCHhhcCCccCCCEEeCCCCC------CccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccc
Confidence 3446677888888888887652 12344 56677 889999999999888775 446 58899999999888764
Q ss_pred C
Q 046172 196 L 196 (198)
Q Consensus 196 L 196 (198)
+
T Consensus 144 ~ 144 (285)
T 1ozn_A 144 L 144 (285)
T ss_dssp C
T ss_pred c
Confidence 3
No 49
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=97.83 E-value=3.7e-05 Score=66.54 Aligned_cols=66 Identities=21% Similarity=0.238 Sum_probs=29.6
Q ss_pred ChhhhcCCccccEEEEecccccCCCccccccCCCCc-cCCcceEEeCCCCCCCCCCC-C-CCCCceEEEcCCCCc
Q 046172 122 NLDTFTKMHKLRFLKFYNSISEGKSKCMVSNCQGPI-LAKVRYFHWDGYPLTSLPSN-I-YPDKLVFLEIPDSNI 193 (198)
Q Consensus 122 ~~~~f~~m~~Lr~L~l~~~~~~~~~~~~~~lp~~l~-l~~Lr~L~~~~~~l~~LP~~-~-~l~~L~~L~L~~S~i 193 (198)
.+.+|.++++|+.|++.++.. ....|..+. +++|++|++.++.+..+|.. | .+.+|++|+|+++++
T Consensus 48 ~~~~~~~l~~L~~L~L~~n~i------~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i 116 (477)
T 2id5_A 48 NQDEFASFPHLEELELNENIV------SAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKI 116 (477)
T ss_dssp CTTTTTTCTTCCEEECTTSCC------CEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCC
T ss_pred CHhHccCCCCCCEEECCCCcc------CEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCcc
Confidence 344555555555555544321 111234444 44555555544444444433 2 344444444444443
No 50
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=97.82 E-value=3.1e-05 Score=62.23 Aligned_cols=68 Identities=19% Similarity=0.220 Sum_probs=45.1
Q ss_pred cChhhhcCCccccEEEEecccccCCCccccccCC-CCc-cCCcceEEeCCCCCCC--CCCCC-CCCCceEEEcCCCCccc
Q 046172 121 LNLDTFTKMHKLRFLKFYNSISEGKSKCMVSNCQ-GPI-LAKVRYFHWDGYPLTS--LPSNI-YPDKLVFLEIPDSNIEQ 195 (198)
Q Consensus 121 ~~~~~f~~m~~Lr~L~l~~~~~~~~~~~~~~lp~-~l~-l~~Lr~L~~~~~~l~~--LP~~~-~l~~L~~L~L~~S~i~~ 195 (198)
+++.+|.++.+|+.|++.+.. ...++. .+. +++|+.|++.++.+.. +|..| .+.+|++|+|+++++..
T Consensus 91 ~~~~~~~~l~~L~~L~l~~n~-------l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~ 163 (276)
T 2z62_A 91 LALGAFSGLSSLQKLVAVETN-------LASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 163 (276)
T ss_dssp ECTTTTTTCTTCCEEECTTSC-------CCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCE
T ss_pred cChhhhcCCccccEEECCCCC-------ccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCc
Confidence 445566677777777766542 233433 466 7788888888777765 56667 57788888888777654
No 51
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=97.81 E-value=2.4e-05 Score=65.27 Aligned_cols=64 Identities=17% Similarity=0.281 Sum_probs=40.6
Q ss_pred cChhhhcCCccccEEEEecccccCCCccccccCCC-Cc-cCCcceEEeCCCCCCCCCC--CC-CCCCceEEEcCCC
Q 046172 121 LNLDTFTKMHKLRFLKFYNSISEGKSKCMVSNCQG-PI-LAKVRYFHWDGYPLTSLPS--NI-YPDKLVFLEIPDS 191 (198)
Q Consensus 121 ~~~~~f~~m~~Lr~L~l~~~~~~~~~~~~~~lp~~-l~-l~~Lr~L~~~~~~l~~LP~--~~-~l~~L~~L~L~~S 191 (198)
+.+.+|.++++|+.|++.++. ...+|.+ +. +++|++|++.++++..+|. .| .+.+|++|+++++
T Consensus 91 ~~~~~~~~l~~L~~L~Ls~n~-------l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n 159 (353)
T 2z80_A 91 IEEDSFSSLGSLEHLDLSYNY-------LSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNM 159 (353)
T ss_dssp ECTTTTTTCTTCCEEECCSSC-------CSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEES
T ss_pred cCHhhcCCCCCCCEEECCCCc-------CCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCC
Confidence 444556666666666666542 3345554 45 6777777777777777776 45 4777777777765
No 52
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=97.81 E-value=5.6e-05 Score=61.00 Aligned_cols=65 Identities=14% Similarity=0.192 Sum_probs=36.0
Q ss_pred hhhhcCCccccEEEEecccccCCCccccccCC-CCc-cCCcceEEeCCCCCCCCCCC-C-CCCCceEEEcCCCCcc
Q 046172 123 LDTFTKMHKLRFLKFYNSISEGKSKCMVSNCQ-GPI-LAKVRYFHWDGYPLTSLPSN-I-YPDKLVFLEIPDSNIE 194 (198)
Q Consensus 123 ~~~f~~m~~Lr~L~l~~~~~~~~~~~~~~lp~-~l~-l~~Lr~L~~~~~~l~~LP~~-~-~l~~L~~L~L~~S~i~ 194 (198)
+.+|.++++|+.|++.+.. ...+|. .+. +++|+.|++.++.+..+|.. | .+.+|++|+|+++++.
T Consensus 122 ~~~~~~l~~L~~L~l~~n~-------l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 190 (285)
T 1ozn_A 122 PGLFRGLAALQYLYLQDNA-------LQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVA 190 (285)
T ss_dssp TTTTTTCTTCCEEECCSSC-------CCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC
T ss_pred HhHhhCCcCCCEEECCCCc-------ccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCccc
Confidence 4445555555555554432 223433 244 66666666666666666653 4 4666666666666554
No 53
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=97.81 E-value=6.5e-05 Score=60.47 Aligned_cols=69 Identities=20% Similarity=0.257 Sum_probs=44.8
Q ss_pred ccChhhhcCCccccEEEEecccccCCCccccccCCC-Cc-cCCcceEEeCCCCCCCCCCCC--CCCCceEEEcCCCCccc
Q 046172 120 GLNLDTFTKMHKLRFLKFYNSISEGKSKCMVSNCQG-PI-LAKVRYFHWDGYPLTSLPSNI--YPDKLVFLEIPDSNIEQ 195 (198)
Q Consensus 120 ~~~~~~f~~m~~Lr~L~l~~~~~~~~~~~~~~lp~~-l~-l~~Lr~L~~~~~~l~~LP~~~--~l~~L~~L~L~~S~i~~ 195 (198)
.+++.+|.++++|+.|++.++. ...+|.+ +. +++|+.|++.++.+..+|... .+.+|++|+|+++++..
T Consensus 123 ~~~~~~~~~l~~L~~L~L~~n~-------l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 195 (272)
T 3rfs_A 123 SLPDGVFDKLTNLTYLNLAHNQ-------LQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKS 195 (272)
T ss_dssp CCCTTTTTTCTTCCEEECCSSC-------CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSC
T ss_pred ccCHHHhccCCCCCEEECCCCc-------cCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCc
Confidence 3445556666667777666542 3344443 45 777788888777777777653 47778888887777654
No 54
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=97.80 E-value=6.5e-05 Score=56.84 Aligned_cols=60 Identities=15% Similarity=0.208 Sum_probs=51.1
Q ss_pred ccccEEEEecccccCCCcccccc-CCCCc-cCCcceEEeCCCCCCCCCCC-C-CCCCceEEEcCCCCcccC
Q 046172 130 HKLRFLKFYNSISEGKSKCMVSN-CQGPI-LAKVRYFHWDGYPLTSLPSN-I-YPDKLVFLEIPDSNIEQL 196 (198)
Q Consensus 130 ~~Lr~L~l~~~~~~~~~~~~~~l-p~~l~-l~~Lr~L~~~~~~l~~LP~~-~-~l~~L~~L~L~~S~i~~L 196 (198)
.+|+.|++.+.. ...+ |..+. +++|++|+++++.+..+|.. | .+.+|++|+|++++|..+
T Consensus 33 ~~L~~L~Ls~N~-------l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l 96 (174)
T 2r9u_A 33 TDKQRLWLNNNQ-------ITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSI 96 (174)
T ss_dssp TTCSEEECCSSC-------CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC
T ss_pred CCCcEEEeCCCC-------ccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCcccee
Confidence 789999998763 3455 66788 99999999999999999987 4 699999999999988754
No 55
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=97.80 E-value=2.4e-05 Score=64.50 Aligned_cols=44 Identities=16% Similarity=0.147 Sum_probs=25.6
Q ss_pred ccCCCCc-cCCcceEEeCCCCCC-CCCCCC-CCCCceEEEcCCCCcc
Q 046172 151 SNCQGPI-LAKVRYFHWDGYPLT-SLPSNI-YPDKLVFLEIPDSNIE 194 (198)
Q Consensus 151 ~lp~~l~-l~~Lr~L~~~~~~l~-~LP~~~-~l~~L~~L~L~~S~i~ 194 (198)
.+|..+. +++|++|++.++.+. .+|..| .+.+|++|+|+++++.
T Consensus 116 ~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~ 162 (313)
T 1ogq_A 116 AIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRIS 162 (313)
T ss_dssp ECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCE
T ss_pred cCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCccc
Confidence 4455555 666666666666554 455555 4666666666665554
No 56
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=97.79 E-value=1.5e-05 Score=58.28 Aligned_cols=83 Identities=17% Similarity=0.198 Sum_probs=61.2
Q ss_pred cceEEEEeeCCcccccccChhhhcCCccccEEEEecccccCCCccccccCCCCc-cCCcceEEeCCCCCCC-CCCCCC-C
Q 046172 104 EKIEGICFDMSKVKQIGLNLDTFTKMHKLRFLKFYNSISEGKSKCMVSNCQGPI-LAKVRYFHWDGYPLTS-LPSNIY-P 180 (198)
Q Consensus 104 ~~v~~i~l~~~~~~~~~~~~~~f~~m~~Lr~L~l~~~~~~~~~~~~~~lp~~l~-l~~Lr~L~~~~~~l~~-LP~~~~-l 180 (198)
.+++.+.+.-.......+ +..|.++++|+.|++.++. ...+ ..+. +++|++|+++++.+.. +|..+. +
T Consensus 17 ~~l~~L~l~~n~l~~~~~-~~~~~~l~~L~~L~l~~n~-------l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l 87 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKL-EGLTDEFEELEFLSTINVG-------LTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKC 87 (149)
T ss_dssp GGCSEEECTTCBCBTTBC-CSCCTTCTTCCEEECTTSC-------CCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHC
T ss_pred ccCeEEEccCCcCChhHH-HHHHhhcCCCcEEECcCCC-------CCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhC
Confidence 345555554332211123 3478899999999998763 2333 6677 9999999999999988 887774 9
Q ss_pred CCceEEEcCCCCccc
Q 046172 181 DKLVFLEIPDSNIEQ 195 (198)
Q Consensus 181 ~~L~~L~L~~S~i~~ 195 (198)
.+|++|+|+++++..
T Consensus 88 ~~L~~L~ls~N~i~~ 102 (149)
T 2je0_A 88 PNLTHLNLSGNKIKD 102 (149)
T ss_dssp TTCCEEECTTSCCCS
T ss_pred CCCCEEECCCCcCCC
Confidence 999999999998875
No 57
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=97.79 E-value=3.3e-05 Score=68.71 Aligned_cols=70 Identities=14% Similarity=0.112 Sum_probs=45.9
Q ss_pred ccChhhhcCCccccEEEEecccccCCCccccccCCCCc-cCCcceEEeCCCCCCCC-CCCC-CCCCceEEEcCCCCccc
Q 046172 120 GLNLDTFTKMHKLRFLKFYNSISEGKSKCMVSNCQGPI-LAKVRYFHWDGYPLTSL-PSNI-YPDKLVFLEIPDSNIEQ 195 (198)
Q Consensus 120 ~~~~~~f~~m~~Lr~L~l~~~~~~~~~~~~~~lp~~l~-l~~Lr~L~~~~~~l~~L-P~~~-~l~~L~~L~L~~S~i~~ 195 (198)
.+.+.+|.++++|+.|++.++.. ....|..+. +++|++|++.++.+..+ |..| .+.+|++|+|+++++..
T Consensus 71 ~~~~~~~~~l~~L~~L~Ls~n~l------~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~ 143 (606)
T 3t6q_A 71 WIHEDTFQSQHRLDTLVLTANPL------IFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISS 143 (606)
T ss_dssp EECTTTTTTCTTCCEEECTTCCC------SEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCC
T ss_pred eeChhhccCccccCeeeCCCCcc------cccChhhhcccccccEeeccccCcccCCcchhccCCcccEEECCCCcccc
Confidence 34556666777777777665421 122366677 77788888877777776 4555 57778888887777654
No 58
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=97.78 E-value=8.4e-05 Score=59.82 Aligned_cols=67 Identities=19% Similarity=0.220 Sum_probs=42.1
Q ss_pred ccChhhhcCCccccEEEEecccccCCCccccccCCC-Cc-cCCcceEEeCCCCCCCCCCC-C-CCCCceEEEcCCCCc
Q 046172 120 GLNLDTFTKMHKLRFLKFYNSISEGKSKCMVSNCQG-PI-LAKVRYFHWDGYPLTSLPSN-I-YPDKLVFLEIPDSNI 193 (198)
Q Consensus 120 ~~~~~~f~~m~~Lr~L~l~~~~~~~~~~~~~~lp~~-l~-l~~Lr~L~~~~~~l~~LP~~-~-~l~~L~~L~L~~S~i 193 (198)
.+++.+|.++++|+.|++.++. ...+|.+ +. +++|+.|++.++.+..+|.. | .+.+|++|+|+++.+
T Consensus 147 ~~~~~~~~~l~~L~~L~l~~n~-------l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~ 217 (272)
T 3rfs_A 147 SLPKGVFDKLTNLTELDLSYNQ-------LQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPW 217 (272)
T ss_dssp CCCTTTTTTCTTCCEEECCSSC-------CCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred ccCHHHhccCccCCEEECCCCC-------cCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCc
Confidence 3455566777777777776652 2344443 34 77777777777777766654 3 467777777776654
No 59
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.77 E-value=3.6e-05 Score=69.04 Aligned_cols=63 Identities=10% Similarity=0.095 Sum_probs=56.8
Q ss_pred hcCCccccEEEEecccccCCCccccccCCCCc-cCCcceEEeCCCCCCCCCCCC-CCCCceEEEcCCCCcccC
Q 046172 126 FTKMHKLRFLKFYNSISEGKSKCMVSNCQGPI-LAKVRYFHWDGYPLTSLPSNI-YPDKLVFLEIPDSNIEQL 196 (198)
Q Consensus 126 f~~m~~Lr~L~l~~~~~~~~~~~~~~lp~~l~-l~~Lr~L~~~~~~l~~LP~~~-~l~~L~~L~L~~S~i~~L 196 (198)
|.++++|+.|++.++. ...+|..+. +++|+.|+++++.+..+| .| .+.+|++|+|++++|..+
T Consensus 459 ~~~l~~L~~L~Ls~N~-------l~~lp~~~~~l~~L~~L~Ls~N~l~~lp-~l~~l~~L~~L~Ls~N~l~~~ 523 (567)
T 1dce_A 459 LEQLLLVTHLDLSHNR-------LRALPPALAALRCLEVLQASDNALENVD-GVANLPRLQELLLCNNRLQQS 523 (567)
T ss_dssp GGGGTTCCEEECCSSC-------CCCCCGGGGGCTTCCEEECCSSCCCCCG-GGTTCSSCCEEECCSSCCCSS
T ss_pred ccccccCcEeecCccc-------ccccchhhhcCCCCCEEECCCCCCCCCc-ccCCCCCCcEEECCCCCCCCC
Confidence 9999999999998863 458899999 999999999999999999 66 799999999999988754
No 60
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=97.76 E-value=4.5e-05 Score=67.08 Aligned_cols=69 Identities=16% Similarity=0.100 Sum_probs=51.3
Q ss_pred ccChhhhcCCccccEEEEecccccCCCcccccc-CCCCc-cCCcceEEeCCCCCCCCCC-CC-CCCCceEEEcCCCCccc
Q 046172 120 GLNLDTFTKMHKLRFLKFYNSISEGKSKCMVSN-CQGPI-LAKVRYFHWDGYPLTSLPS-NI-YPDKLVFLEIPDSNIEQ 195 (198)
Q Consensus 120 ~~~~~~f~~m~~Lr~L~l~~~~~~~~~~~~~~l-p~~l~-l~~Lr~L~~~~~~l~~LP~-~~-~l~~L~~L~L~~S~i~~ 195 (198)
.+++.+|.++++|++|++.+.. ...+ |+.+. +++|++|++.++.+..+|. .| .+.+|++|+|+++.+..
T Consensus 66 ~i~~~~~~~l~~L~~L~L~~n~-------l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~ 138 (570)
T 2z63_A 66 TIEDGAYQSLSHLSTLILTGNP-------IQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQS 138 (570)
T ss_dssp EECTTTTTTCTTCCEEECTTCC-------CCEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCC
T ss_pred ccCcccccCchhCCEEeCcCCc-------CCccCHhhhcCccccccccccccccccCCCccccccccccEEecCCCccce
Confidence 3556677888888888887653 3344 45677 8888888888888888886 45 68889999988887753
No 61
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=97.76 E-value=6.6e-05 Score=67.22 Aligned_cols=69 Identities=14% Similarity=0.141 Sum_probs=43.1
Q ss_pred ccChhhhcCCccccEEEEecccccCCCccccccCCCC-c-cCCcceEEeCCCCCCCCCC-CC-CCCCceEEEcCCCCccc
Q 046172 120 GLNLDTFTKMHKLRFLKFYNSISEGKSKCMVSNCQGP-I-LAKVRYFHWDGYPLTSLPS-NI-YPDKLVFLEIPDSNIEQ 195 (198)
Q Consensus 120 ~~~~~~f~~m~~Lr~L~l~~~~~~~~~~~~~~lp~~l-~-l~~Lr~L~~~~~~l~~LP~-~~-~l~~L~~L~L~~S~i~~ 195 (198)
.+++.+|+++++|+.|++.++. ...+|.++ . +++|++|++.++.+..+|+ .| .+.+|++|+|+++.+..
T Consensus 113 ~~~~~~~~~l~~L~~L~L~~n~-------l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 185 (597)
T 3oja_B 113 YLPPHVFQNVPLLTVLVLERND-------LSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTH 185 (597)
T ss_dssp CCCTTTTTTCTTCCEEECCSSC-------CCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSB
T ss_pred CCCHHHHcCCCCCCEEEeeCCC-------CCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCC
Confidence 3455566666666666666542 34555554 4 7777777777777666554 35 46777777777766653
No 62
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=97.75 E-value=7.8e-05 Score=62.84 Aligned_cols=70 Identities=19% Similarity=0.213 Sum_probs=51.3
Q ss_pred ccChhhhcCCccccEEEEecccccCCCcccccc-CCCCc-cCCcceEEeCCCCCCCCCCCC--CCCCceEEEcCCCCccc
Q 046172 120 GLNLDTFTKMHKLRFLKFYNSISEGKSKCMVSN-CQGPI-LAKVRYFHWDGYPLTSLPSNI--YPDKLVFLEIPDSNIEQ 195 (198)
Q Consensus 120 ~~~~~~f~~m~~Lr~L~l~~~~~~~~~~~~~~l-p~~l~-l~~Lr~L~~~~~~l~~LP~~~--~l~~L~~L~L~~S~i~~ 195 (198)
.+++.+|.++++|+.|++.++. ...+ |..+. +++|++|++.++.+..+|..+ .+.+|++|+|+++++..
T Consensus 83 ~~~~~~~~~l~~L~~L~L~~n~-------l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~ 155 (390)
T 3o6n_A 83 EIDTYAFAYAHTIQKLYMGFNA-------IRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLER 155 (390)
T ss_dssp EECTTTTTTCTTCCEEECCSSC-------CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCB
T ss_pred ccChhhccCCCCcCEEECCCCC-------CCcCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCc
Confidence 4556678888888888887653 3344 44566 888888888888888888763 58888888888887754
Q ss_pred C
Q 046172 196 L 196 (198)
Q Consensus 196 L 196 (198)
+
T Consensus 156 ~ 156 (390)
T 3o6n_A 156 I 156 (390)
T ss_dssp C
T ss_pred c
Confidence 3
No 63
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=97.74 E-value=3.2e-05 Score=67.85 Aligned_cols=65 Identities=20% Similarity=0.279 Sum_probs=33.7
Q ss_pred cChhhhcCCccccEEEEecccccCCCccccccCCC-Cc-cCCcceEEeCCCCCCC--CCCCC-CCCCceEEEcCCCC
Q 046172 121 LNLDTFTKMHKLRFLKFYNSISEGKSKCMVSNCQG-PI-LAKVRYFHWDGYPLTS--LPSNI-YPDKLVFLEIPDSN 192 (198)
Q Consensus 121 ~~~~~f~~m~~Lr~L~l~~~~~~~~~~~~~~lp~~-l~-l~~Lr~L~~~~~~l~~--LP~~~-~l~~L~~L~L~~S~ 192 (198)
+++.+|.++++|+.|++.++. ...+|.+ +. +++|++|+++++.+.. .|..| .+.+|++|+|++++
T Consensus 65 ~~~~~~~~l~~L~~L~Ls~n~-------l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~ 134 (549)
T 2z81_A 65 IEGDAFYSLGSLEHLDLSDNH-------LSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVE 134 (549)
T ss_dssp ECTTTTTTCTTCCEEECTTSC-------CCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESS
T ss_pred cChhhccccccCCEEECCCCc-------cCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCc
Confidence 334455555555555555432 2233332 44 5666666666665553 24444 46666666665554
No 64
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=97.74 E-value=6.9e-05 Score=65.88 Aligned_cols=83 Identities=16% Similarity=0.177 Sum_probs=61.7
Q ss_pred cceEEEEeeCCcccccccChhhhcCCccccEEEEecccccCCCccccccCC-CCc-cCCcceEEeCCCCCCC--CCCCC-
Q 046172 104 EKIEGICFDMSKVKQIGLNLDTFTKMHKLRFLKFYNSISEGKSKCMVSNCQ-GPI-LAKVRYFHWDGYPLTS--LPSNI- 178 (198)
Q Consensus 104 ~~v~~i~l~~~~~~~~~~~~~~f~~m~~Lr~L~l~~~~~~~~~~~~~~lp~-~l~-l~~Lr~L~~~~~~l~~--LP~~~- 178 (198)
.+++.+.+. ...-..+++.+|.++++|+.|++.++. ...+|. .+. +++|++|++.++.+.. +|..|
T Consensus 76 ~~L~~L~L~--~n~l~~~~~~~~~~l~~L~~L~L~~n~-------l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~ 146 (570)
T 2z63_A 76 SHLSTLILT--GNPIQSLALGAFSGLSSLQKLVAVETN-------LASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFS 146 (570)
T ss_dssp TTCCEEECT--TCCCCEECTTTTTTCTTCCEEECTTSC-------CCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGG
T ss_pred hhCCEEeCc--CCcCCccCHhhhcCccccccccccccc-------cccCCCccccccccccEEecCCCccceecChhhhc
Confidence 344544443 222234567889999999999998763 445555 577 9999999999998875 78888
Q ss_pred CCCCceEEEcCCCCccc
Q 046172 179 YPDKLVFLEIPDSNIEQ 195 (198)
Q Consensus 179 ~l~~L~~L~L~~S~i~~ 195 (198)
.+.+|++|+++++++..
T Consensus 147 ~l~~L~~L~l~~n~l~~ 163 (570)
T 2z63_A 147 NLTNLEHLDLSSNKIQS 163 (570)
T ss_dssp GCTTCCEEECTTSCCCE
T ss_pred ccCCCCEEeCcCCccce
Confidence 59999999999988764
No 65
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=97.73 E-value=5.7e-05 Score=64.72 Aligned_cols=69 Identities=20% Similarity=0.207 Sum_probs=38.4
Q ss_pred cChhhhcCCccccEEEEecccccCCCccccccCCCCc-cCCcceEEeCCCCCCC-CCCC--C-CCCCceEEEcCCCCccc
Q 046172 121 LNLDTFTKMHKLRFLKFYNSISEGKSKCMVSNCQGPI-LAKVRYFHWDGYPLTS-LPSN--I-YPDKLVFLEIPDSNIEQ 195 (198)
Q Consensus 121 ~~~~~f~~m~~Lr~L~l~~~~~~~~~~~~~~lp~~l~-l~~Lr~L~~~~~~l~~-LP~~--~-~l~~L~~L~L~~S~i~~ 195 (198)
+++.+|.++++|+.|++.++.. ....|..+. +++|++|++.++.+.. +|.. | .+.+|++|+|+++++..
T Consensus 70 i~~~~~~~l~~L~~L~Ls~n~l------~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~ 143 (455)
T 3v47_A 70 IRNNTFRGLSSLIILKLDYNQF------LQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKK 143 (455)
T ss_dssp ECTTTTTTCTTCCEEECTTCTT------CEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCS
T ss_pred ECcccccccccCCEEeCCCCcc------CccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCc
Confidence 4455566666666666655421 112355666 6666666666666654 3332 4 46666666666666543
No 66
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=97.73 E-value=3e-05 Score=64.04 Aligned_cols=69 Identities=19% Similarity=0.250 Sum_probs=47.8
Q ss_pred cChhhhcCCccccEEEEecccccCCCccccccC-CCCc-cCCcceEEeCCCCCCCCCCCC-CCCCceEEEcCCCCcccC
Q 046172 121 LNLDTFTKMHKLRFLKFYNSISEGKSKCMVSNC-QGPI-LAKVRYFHWDGYPLTSLPSNI-YPDKLVFLEIPDSNIEQL 196 (198)
Q Consensus 121 ~~~~~f~~m~~Lr~L~l~~~~~~~~~~~~~~lp-~~l~-l~~Lr~L~~~~~~l~~LP~~~-~l~~L~~L~L~~S~i~~L 196 (198)
+++.+|.++++|+.|++.+.. ...+| ..+. +++|+.|++.++.+..+|..+ .+.+|++|+|++++|..+
T Consensus 208 ~~~~~l~~l~~L~~L~L~~N~-------l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N~l~~~ 279 (332)
T 2ft3_A 208 IELEDLLRYSKLYRLGLGHNQ-------IRMIENGSLSFLPTLRELHLDNNKLSRVPAGLPDLKLLQVVYLHTNNITKV 279 (332)
T ss_dssp CCTTSSTTCTTCSCCBCCSSC-------CCCCCTTGGGGCTTCCEEECCSSCCCBCCTTGGGCTTCCEEECCSSCCCBC
T ss_pred cCHHHhcCCCCCCEEECCCCc-------CCcCChhHhhCCCCCCEEECCCCcCeecChhhhcCccCCEEECCCCCCCcc
Confidence 345667777888888877653 23333 3556 777888888877777888777 577788888887777643
No 67
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=97.72 E-value=3.2e-05 Score=72.12 Aligned_cols=69 Identities=14% Similarity=0.163 Sum_probs=48.4
Q ss_pred ccChhhhcCCccccEEEEecccccCCCccccc-cCCCCc-cCCcceEEeCCCCCCC-CCCC--C-CCCCceEEEcCCCCc
Q 046172 120 GLNLDTFTKMHKLRFLKFYNSISEGKSKCMVS-NCQGPI-LAKVRYFHWDGYPLTS-LPSN--I-YPDKLVFLEIPDSNI 193 (198)
Q Consensus 120 ~~~~~~f~~m~~Lr~L~l~~~~~~~~~~~~~~-lp~~l~-l~~Lr~L~~~~~~l~~-LP~~--~-~l~~L~~L~L~~S~i 193 (198)
.+++.+|.++++|++|++.++. ... .|+.+. +++|++|++.++.+.. +|.. | ++.+|++|+|+++.+
T Consensus 63 ~i~~~~f~~L~~L~~L~Ls~N~-------l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l 135 (844)
T 3j0a_A 63 TIDKEAFRNLPNLRILDLGSSK-------IYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQI 135 (844)
T ss_dssp EECTTTTSSCTTCCEEECTTCC-------CCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCC
T ss_pred ccCHHHhcCCCCCCEEECCCCc-------CcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcc
Confidence 4556777777777777777653 223 377777 8888888888887764 5544 5 588888888888777
Q ss_pred cc
Q 046172 194 EQ 195 (198)
Q Consensus 194 ~~ 195 (198)
..
T Consensus 136 ~~ 137 (844)
T 3j0a_A 136 RS 137 (844)
T ss_dssp CC
T ss_pred cc
Confidence 54
No 68
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=97.72 E-value=9.8e-05 Score=59.25 Aligned_cols=69 Identities=16% Similarity=0.100 Sum_probs=52.6
Q ss_pred ccChhhhcCCccccEEEEecccccCCCcccccc-CCCCc-cCCcceEEeCCCCCCCCCC-CC-CCCCceEEEcCCCCccc
Q 046172 120 GLNLDTFTKMHKLRFLKFYNSISEGKSKCMVSN-CQGPI-LAKVRYFHWDGYPLTSLPS-NI-YPDKLVFLEIPDSNIEQ 195 (198)
Q Consensus 120 ~~~~~~f~~m~~Lr~L~l~~~~~~~~~~~~~~l-p~~l~-l~~Lr~L~~~~~~l~~LP~-~~-~l~~L~~L~L~~S~i~~ 195 (198)
.+++.+|.++++|+.|++.+.. ...+ |..+. +++|++|++.++.+..+|. .| .+.+|++|+|+++++..
T Consensus 66 ~~~~~~~~~l~~L~~L~L~~n~-------l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 138 (276)
T 2z62_A 66 TIEDGAYQSLSHLSTLILTGNP-------IQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQS 138 (276)
T ss_dssp EECTTTTTTCTTCCEEECTTCC-------CCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCC
T ss_pred ccCHHHccCCcCCCEEECCCCc-------cCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccce
Confidence 4556678888888888887653 3344 35677 8899999999988888876 46 68899999999888764
No 69
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=97.71 E-value=6.4e-05 Score=66.82 Aligned_cols=70 Identities=16% Similarity=0.168 Sum_probs=53.7
Q ss_pred ccChhhhcCCccccEEEEecccccCCCcccccc-CCCCc-cCCcceEEeCCCCCCCC--CCCCCCCCceEEEcCCCCccc
Q 046172 120 GLNLDTFTKMHKLRFLKFYNSISEGKSKCMVSN-CQGPI-LAKVRYFHWDGYPLTSL--PSNIYPDKLVFLEIPDSNIEQ 195 (198)
Q Consensus 120 ~~~~~~f~~m~~Lr~L~l~~~~~~~~~~~~~~l-p~~l~-l~~Lr~L~~~~~~l~~L--P~~~~l~~L~~L~L~~S~i~~ 195 (198)
.+.+.+|.++++|+.|++.++. ...+ |..+. +++|++|++.++.+..+ |..+.+.+|++|+|+++++..
T Consensus 95 ~~~~~~~~~l~~L~~L~L~~n~-------i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 167 (606)
T 3t6q_A 95 FMAETALSGPKALKHLFFIQTG-------ISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHY 167 (606)
T ss_dssp EECTTTTSSCTTCCEEECTTSC-------CSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCE
T ss_pred ccChhhhcccccccEeeccccC-------cccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccc
Confidence 4567788899999999988763 3344 55677 88899999998888876 555678899999998888765
Q ss_pred C
Q 046172 196 L 196 (198)
Q Consensus 196 L 196 (198)
+
T Consensus 168 ~ 168 (606)
T 3t6q_A 168 L 168 (606)
T ss_dssp E
T ss_pred c
Confidence 3
No 70
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=97.71 E-value=0.00011 Score=55.13 Aligned_cols=60 Identities=18% Similarity=0.258 Sum_probs=51.1
Q ss_pred ccccEEEEecccccCCCcccccc-CCCCc-cCCcceEEeCCCCCCCCCCC-C-CCCCceEEEcCCCCcccC
Q 046172 130 HKLRFLKFYNSISEGKSKCMVSN-CQGPI-LAKVRYFHWDGYPLTSLPSN-I-YPDKLVFLEIPDSNIEQL 196 (198)
Q Consensus 130 ~~Lr~L~l~~~~~~~~~~~~~~l-p~~l~-l~~Lr~L~~~~~~l~~LP~~-~-~l~~L~~L~L~~S~i~~L 196 (198)
.+|+.|++.+.. ...+ |..+. +++|++|+++++.+..+|.. | .+.+|++|+|++++|..+
T Consensus 30 ~~l~~L~L~~N~-------i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~ 93 (170)
T 3g39_A 30 TTTQVLYLYDNQ-------ITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSI 93 (170)
T ss_dssp TTCSEEECCSSC-------CCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC
T ss_pred CCCcEEEcCCCc-------CCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEe
Confidence 679999998763 4455 66788 99999999999999999986 4 699999999999998754
No 71
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=97.70 E-value=5.8e-05 Score=64.88 Aligned_cols=63 Identities=17% Similarity=0.365 Sum_probs=35.0
Q ss_pred cChhhhcCCccccEEEEecccccCCCccccccCC-CCc-cCCcceEEeCCCCCCCCCCC-C-CCCCceEEEcCC
Q 046172 121 LNLDTFTKMHKLRFLKFYNSISEGKSKCMVSNCQ-GPI-LAKVRYFHWDGYPLTSLPSN-I-YPDKLVFLEIPD 190 (198)
Q Consensus 121 ~~~~~f~~m~~Lr~L~l~~~~~~~~~~~~~~lp~-~l~-l~~Lr~L~~~~~~l~~LP~~-~-~l~~L~~L~L~~ 190 (198)
+.+.+|.++.+|+.|++.++. ...+|. .+. +++|++|++.++.+..+|.. | .+.+|++|+|++
T Consensus 103 i~~~~~~~l~~L~~L~L~~n~-------l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~ 169 (440)
T 3zyj_A 103 IEIGAFNGLANLNTLELFDNR-------LTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGE 169 (440)
T ss_dssp ECGGGGTTCSSCCEEECCSSC-------CSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCC
T ss_pred cChhhccCCccCCEEECCCCc-------CCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCC
Confidence 344555555556666555432 234443 344 66666666666666666543 3 466666666665
No 72
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=97.70 E-value=8.2e-05 Score=67.12 Aligned_cols=67 Identities=15% Similarity=0.097 Sum_probs=34.6
Q ss_pred cChhhhcCCccccEEEEecccccCCCccccccC-CCCc-cCCcceEEeCCCCCCCCC-CCC-CCCCceEEEcCCCCcc
Q 046172 121 LNLDTFTKMHKLRFLKFYNSISEGKSKCMVSNC-QGPI-LAKVRYFHWDGYPLTSLP-SNI-YPDKLVFLEIPDSNIE 194 (198)
Q Consensus 121 ~~~~~f~~m~~Lr~L~l~~~~~~~~~~~~~~lp-~~l~-l~~Lr~L~~~~~~l~~LP-~~~-~l~~L~~L~L~~S~i~ 194 (198)
+++.+|.++.+|+.|++.++. ...+| ..+. +++|++|++.++.+...| ..| .+.+|++|+|+++++.
T Consensus 88 l~~~~~~~l~~L~~L~L~~n~-------l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 158 (680)
T 1ziw_A 88 LSDKTFAFCTNLTELHLMSNS-------IQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQ 158 (680)
T ss_dssp CCTTTTTTCTTCSEEECCSSC-------CCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCC
T ss_pred cChhhhccCCCCCEEECCCCc-------cCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCccc
Confidence 334445555555555555432 22333 3455 666666666666555433 334 4666666666665554
No 73
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=97.70 E-value=7e-05 Score=60.96 Aligned_cols=40 Identities=15% Similarity=0.136 Sum_probs=18.6
Q ss_pred CCCc-cCCcceEEeCCCCCCCCCC-CC-CCCCceEEEcCCCCc
Q 046172 154 QGPI-LAKVRYFHWDGYPLTSLPS-NI-YPDKLVFLEIPDSNI 193 (198)
Q Consensus 154 ~~l~-l~~Lr~L~~~~~~l~~LP~-~~-~l~~L~~L~L~~S~i 193 (198)
..+. +++|+.|+++++.+..+|. .| .+.+|++|+|+++++
T Consensus 193 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l 235 (306)
T 2z66_A 193 TAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHI 235 (306)
T ss_dssp TTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCC
T ss_pred HHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCC
Confidence 3444 4455555555544444443 22 344555555555444
No 74
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=97.70 E-value=9.3e-05 Score=61.40 Aligned_cols=69 Identities=16% Similarity=0.070 Sum_probs=56.0
Q ss_pred cccChhhhcCCccccEEEEecccccCCCccccccC-CCCc-cCCcceEEeCCCCCCCCCCCC-CCCCceEEEcCCCCcc
Q 046172 119 IGLNLDTFTKMHKLRFLKFYNSISEGKSKCMVSNC-QGPI-LAKVRYFHWDGYPLTSLPSNI-YPDKLVFLEIPDSNIE 194 (198)
Q Consensus 119 ~~~~~~~f~~m~~Lr~L~l~~~~~~~~~~~~~~lp-~~l~-l~~Lr~L~~~~~~l~~LP~~~-~l~~L~~L~L~~S~i~ 194 (198)
-.+++.+|.++.+|+.|++++.. +..+| ..+. +++|++|+++++.+..+|..+ ....|+.|+|.++.+.
T Consensus 45 ~~~~~~~~~~l~~L~~L~l~~N~-------l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~L~~l~l~~N~~~ 116 (347)
T 2ifg_A 45 QHLELRDLRGLGELRNLTIVKSG-------LRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLSLQELVLSGNPLH 116 (347)
T ss_dssp CEECGGGSCSCCCCSEEECCSSC-------CCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSCCCCEEECCSSCCC
T ss_pred CCcChhHhccccCCCEEECCCCc-------cceeCHHHhcCCcCCCEEeCCCCccceeCHHHcccCCceEEEeeCCCcc
Confidence 45677889999999999998763 44554 4567 999999999999999999764 5445999999998875
No 75
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=97.67 E-value=7.2e-05 Score=67.51 Aligned_cols=69 Identities=10% Similarity=0.188 Sum_probs=53.9
Q ss_pred ccChhhhcCCccccEEEEecccccCCCccccccCC-CCc-cCCcceEEeCCCCCCCCCC-CC-CCCCceEEEcCCCCccc
Q 046172 120 GLNLDTFTKMHKLRFLKFYNSISEGKSKCMVSNCQ-GPI-LAKVRYFHWDGYPLTSLPS-NI-YPDKLVFLEIPDSNIEQ 195 (198)
Q Consensus 120 ~~~~~~f~~m~~Lr~L~l~~~~~~~~~~~~~~lp~-~l~-l~~Lr~L~~~~~~l~~LP~-~~-~l~~L~~L~L~~S~i~~ 195 (198)
.+.+.+|.++++|++|++.++. ...+|. .+. +++|++|++.++.+..+|. .| .+.+|++|+|+++++..
T Consensus 63 ~~~~~~~~~l~~L~~L~L~~n~-------l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~ 135 (680)
T 1ziw_A 63 KLEPELCQKLPMLKVLNLQHNE-------LSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSS 135 (680)
T ss_dssp CCCTTHHHHCTTCCEEECCSSC-------CCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSC
T ss_pred ccCHHHHhcccCcCEEECCCCc-------cCccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccc
Confidence 4556778888888888887653 456776 477 9999999999999888874 56 68999999999887754
No 76
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=97.66 E-value=7.2e-05 Score=57.31 Aligned_cols=65 Identities=11% Similarity=-0.023 Sum_probs=42.3
Q ss_pred hhhhcCCccccEEEEecccccCCCccccccCCCCc-cCCcceEEeCCCCCCCCCCCCCCCCceEEEcCCCCcc
Q 046172 123 LDTFTKMHKLRFLKFYNSISEGKSKCMVSNCQGPI-LAKVRYFHWDGYPLTSLPSNIYPDKLVFLEIPDSNIE 194 (198)
Q Consensus 123 ~~~f~~m~~Lr~L~l~~~~~~~~~~~~~~lp~~l~-l~~Lr~L~~~~~~l~~LP~~~~l~~L~~L~L~~S~i~ 194 (198)
+..|.+|++|+.|++.++. ....+| .+. +++|+.|++.++++..+|.--.+.+|++|++.+++|.
T Consensus 129 ~~~l~~l~~L~~L~L~~n~------~i~~~~-~l~~l~~L~~L~l~~n~i~~~~~l~~l~~L~~L~l~~N~i~ 194 (197)
T 4ezg_A 129 LTKINTLPKVNSIDLSYNG------AITDIM-PLKTLPELKSLNIQFDGVHDYRGIEDFPKLNQLYAFSQTIG 194 (197)
T ss_dssp HHHHTTCSSCCEEECCSCT------BCCCCG-GGGGCSSCCEEECTTBCCCCCTTGGGCSSCCEEEECBC---
T ss_pred HHHHhhCCCCCEEEccCCC------CccccH-hhcCCCCCCEEECCCCCCcChHHhccCCCCCEEEeeCcccC
Confidence 4567777777777776652 022344 466 7788888888888887773226778888888887764
No 77
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=97.64 E-value=7.3e-05 Score=62.07 Aligned_cols=64 Identities=16% Similarity=0.097 Sum_probs=42.0
Q ss_pred hhhcCCccccEEEEecccccCCCccccccCCCCc-cCCcceEEeCCCC-CCCCCCCC-CCCCceEEEcCCCCc
Q 046172 124 DTFTKMHKLRFLKFYNSISEGKSKCMVSNCQGPI-LAKVRYFHWDGYP-LTSLPSNI-YPDKLVFLEIPDSNI 193 (198)
Q Consensus 124 ~~f~~m~~Lr~L~l~~~~~~~~~~~~~~lp~~l~-l~~Lr~L~~~~~~-l~~LP~~~-~l~~L~~L~L~~S~i 193 (198)
..|.++++|+.|++.++.. ...+|..+. +++|+.|++.+|+ ...+|..+ .+.+|++|+|+++++
T Consensus 223 ~~l~~l~~L~~L~Ls~n~~------~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~ 289 (328)
T 4fcg_A 223 PAIHHLPKLEELDLRGCTA------LRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVN 289 (328)
T ss_dssp GGGGGCTTCCEEECTTCTT------CCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTT
T ss_pred hhhccCCCCCEEECcCCcc------hhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCc
Confidence 3577888888888877531 334566666 6677777776665 44566666 466777777776543
No 78
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=97.63 E-value=0.00013 Score=65.21 Aligned_cols=70 Identities=19% Similarity=0.207 Sum_probs=51.0
Q ss_pred ccChhhhcCCccccEEEEecccccCCCccccccCC-CCc-cCCcceEEeCCCCCCCCCCCC--CCCCceEEEcCCCCccc
Q 046172 120 GLNLDTFTKMHKLRFLKFYNSISEGKSKCMVSNCQ-GPI-LAKVRYFHWDGYPLTSLPSNI--YPDKLVFLEIPDSNIEQ 195 (198)
Q Consensus 120 ~~~~~~f~~m~~Lr~L~l~~~~~~~~~~~~~~lp~-~l~-l~~Lr~L~~~~~~l~~LP~~~--~l~~L~~L~L~~S~i~~ 195 (198)
.+++.+|.++++|+.|++.++. ...+|. .+. +++|++|++.++.+..+|..+ .+.+|++|+|+++.+..
T Consensus 89 ~~~~~~~~~l~~L~~L~L~~n~-------l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~ 161 (597)
T 3oja_B 89 EIDTYAFAYAHTIQKLYMGFNA-------IRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLER 161 (597)
T ss_dssp EECTTTTTTCTTCCEEECCSSC-------CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCB
T ss_pred CCChHHhcCCCCCCEEECCCCc-------CCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCC
Confidence 4556678888888888887653 334443 456 888888888888888888763 58888888888887764
Q ss_pred C
Q 046172 196 L 196 (198)
Q Consensus 196 L 196 (198)
+
T Consensus 162 ~ 162 (597)
T 3oja_B 162 I 162 (597)
T ss_dssp C
T ss_pred C
Confidence 3
No 79
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=97.63 E-value=0.00011 Score=63.08 Aligned_cols=37 Identities=22% Similarity=0.321 Sum_probs=21.0
Q ss_pred cCCcceEEeCCCCCCCCCCCCCCCCceEEEcCCCCcc
Q 046172 158 LAKVRYFHWDGYPLTSLPSNIYPDKLVFLEIPDSNIE 194 (198)
Q Consensus 158 l~~Lr~L~~~~~~l~~LP~~~~l~~L~~L~L~~S~i~ 194 (198)
+++|++|++.++.+..+|.-..+.+|++|+|+++++.
T Consensus 184 l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~ 220 (440)
T 3zyj_A 184 LSNLRYLNLAMCNLREIPNLTPLIKLDELDLSGNHLS 220 (440)
T ss_dssp CSSCCEEECTTSCCSSCCCCTTCSSCCEEECTTSCCC
T ss_pred ccccCeecCCCCcCccccccCCCcccCEEECCCCccC
Confidence 5566666666666666654334555555555555544
No 80
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=97.62 E-value=0.00016 Score=61.84 Aligned_cols=67 Identities=18% Similarity=0.249 Sum_probs=47.7
Q ss_pred cChhhhcCCccccEEEEecccccCCCccccc-cCCCCc-cCCcceEEeCCCCCCCCCCCC--CCCCceEEEcCCCCcc
Q 046172 121 LNLDTFTKMHKLRFLKFYNSISEGKSKCMVS-NCQGPI-LAKVRYFHWDGYPLTSLPSNI--YPDKLVFLEIPDSNIE 194 (198)
Q Consensus 121 ~~~~~f~~m~~Lr~L~l~~~~~~~~~~~~~~-lp~~l~-l~~Lr~L~~~~~~l~~LP~~~--~l~~L~~L~L~~S~i~ 194 (198)
+.+.+|.++++|+.|++.++. ... .|..+. +++|++|+++++.+.++|... .+.+|++|+|+++.+.
T Consensus 338 ~~~~~~~~l~~L~~L~Ls~N~-------l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~ 408 (455)
T 3v47_A 338 IDSRMFENLDKLEVLDLSYNH-------IRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD 408 (455)
T ss_dssp ECGGGGTTCTTCCEEECCSSC-------CCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred cChhHhcCcccCCEEECCCCc-------ccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcc
Confidence 345566666666666666542 223 366777 888888888888888888753 5888888888888764
No 81
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=97.62 E-value=4.4e-05 Score=62.88 Aligned_cols=44 Identities=11% Similarity=0.187 Sum_probs=25.9
Q ss_pred ccCCCCc-cCCcceEEeCCCCCC-CCCCCC-CCC-CceEEEcCCCCcc
Q 046172 151 SNCQGPI-LAKVRYFHWDGYPLT-SLPSNI-YPD-KLVFLEIPDSNIE 194 (198)
Q Consensus 151 ~lp~~l~-l~~Lr~L~~~~~~l~-~LP~~~-~l~-~L~~L~L~~S~i~ 194 (198)
.+|..+. +++|++|+++++.+. .+|..+ .+. +|++|+|+++++.
T Consensus 140 ~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~ 187 (313)
T 1ogq_A 140 TLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLT 187 (313)
T ss_dssp CCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEE
T ss_pred cCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeee
Confidence 3555555 666666666666655 566555 344 6666666665553
No 82
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=97.62 E-value=8.7e-05 Score=61.58 Aligned_cols=64 Identities=16% Similarity=0.148 Sum_probs=54.6
Q ss_pred hcCCccccEEEEec-ccccCCCccccccC-CCCc-cCCcceEEeCCCCCCCCCCC-C-CCCCceEEEcCCCCcccC
Q 046172 126 FTKMHKLRFLKFYN-SISEGKSKCMVSNC-QGPI-LAKVRYFHWDGYPLTSLPSN-I-YPDKLVFLEIPDSNIEQL 196 (198)
Q Consensus 126 f~~m~~Lr~L~l~~-~~~~~~~~~~~~lp-~~l~-l~~Lr~L~~~~~~l~~LP~~-~-~l~~L~~L~L~~S~i~~L 196 (198)
|..+.+|+.|++++ . ....+| ..+. +.+|++|+++++.+..+|+. | .+.+|+.|+|++++|..+
T Consensus 27 l~~~~~L~~L~l~~~n-------~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~ 95 (347)
T 2ifg_A 27 LPGAENLTELYIENQQ-------HLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESL 95 (347)
T ss_dssp SCSCSCCSEEECCSCS-------SCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCC
T ss_pred CCCCCCeeEEEccCCC-------CCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCcccee
Confidence 89999999999985 4 245666 5677 99999999999999998865 5 699999999999998764
No 83
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=97.60 E-value=5.7e-05 Score=62.90 Aligned_cols=83 Identities=17% Similarity=0.189 Sum_probs=53.2
Q ss_pred cceEEEEeeCCcccccccChhhhcCCccccEEEEecccccCCCccccccCC--CCc-cCCcceEEeCCC-CCCCCC-CCC
Q 046172 104 EKIEGICFDMSKVKQIGLNLDTFTKMHKLRFLKFYNSISEGKSKCMVSNCQ--GPI-LAKVRYFHWDGY-PLTSLP-SNI 178 (198)
Q Consensus 104 ~~v~~i~l~~~~~~~~~~~~~~f~~m~~Lr~L~l~~~~~~~~~~~~~~lp~--~l~-l~~Lr~L~~~~~-~l~~LP-~~~ 178 (198)
.+++.+.+..... ..+++.+|.++++|+.|++.+.. ...+|. .+. +++|++|++.++ .+..+| ..|
T Consensus 100 ~~L~~L~Ls~n~l--~~~~~~~~~~l~~L~~L~L~~n~-------l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~ 170 (353)
T 2z80_A 100 GSLEHLDLSYNYL--SNLSSSWFKPLSSLTFLNLLGNP-------YKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDF 170 (353)
T ss_dssp TTCCEEECCSSCC--SSCCHHHHTTCTTCSEEECTTCC-------CSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTT
T ss_pred CCCCEEECCCCcC--CcCCHhHhCCCccCCEEECCCCC-------CcccCchhhhccCCCCcEEECCCCccccccCHHHc
Confidence 3444444433322 34566678888888888887653 345665 455 888888888777 466664 445
Q ss_pred -CCCCceEEEcCCCCccc
Q 046172 179 -YPDKLVFLEIPDSNIEQ 195 (198)
Q Consensus 179 -~l~~L~~L~L~~S~i~~ 195 (198)
.+.+|++|+++++++..
T Consensus 171 ~~l~~L~~L~l~~n~l~~ 188 (353)
T 2z80_A 171 AGLTFLEELEIDASDLQS 188 (353)
T ss_dssp TTCCEEEEEEEEETTCCE
T ss_pred cCCCCCCEEECCCCCcCc
Confidence 57888888888776653
No 84
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=97.58 E-value=3.6e-05 Score=59.06 Aligned_cols=67 Identities=16% Similarity=0.078 Sum_probs=48.9
Q ss_pred hhhhcCCccccEEEEecccccCCCccccccCCCCc-cCCcceEEeCCCC-CCCCCCCCCCCCceEEEcCCCCccc
Q 046172 123 LDTFTKMHKLRFLKFYNSISEGKSKCMVSNCQGPI-LAKVRYFHWDGYP-LTSLPSNIYPDKLVFLEIPDSNIEQ 195 (198)
Q Consensus 123 ~~~f~~m~~Lr~L~l~~~~~~~~~~~~~~lp~~l~-l~~Lr~L~~~~~~-l~~LP~~~~l~~L~~L~L~~S~i~~ 195 (198)
...|.+|++|+.|++.++.. ....|..+. +++|+.|++++++ +..+|.-..+.+|++|+++++++..
T Consensus 105 ~~~l~~l~~L~~L~Ls~n~i------~~~~~~~l~~l~~L~~L~L~~n~~i~~~~~l~~l~~L~~L~l~~n~i~~ 173 (197)
T 4ezg_A 105 IPNLSGLTSLTLLDISHSAH------DDSILTKINTLPKVNSIDLSYNGAITDIMPLKTLPELKSLNIQFDGVHD 173 (197)
T ss_dssp SCCCTTCTTCCEEECCSSBC------BGGGHHHHTTCSSCCEEECCSCTBCCCCGGGGGCSSCCEEECTTBCCCC
T ss_pred ChhhcCCCCCCEEEecCCcc------CcHhHHHHhhCCCCCEEEccCCCCccccHhhcCCCCCCEEECCCCCCcC
Confidence 45577788888888876531 112456667 8889999999888 8888843368889999999888764
No 85
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=97.58 E-value=6.4e-05 Score=65.64 Aligned_cols=81 Identities=12% Similarity=0.208 Sum_probs=61.0
Q ss_pred cceEEEEeeCCcccccccChhhhcCCccccEEEEecccccCCCccccccCCCCccCCcceEEeCCCCCCC--CCCCC-CC
Q 046172 104 EKIEGICFDMSKVKQIGLNLDTFTKMHKLRFLKFYNSISEGKSKCMVSNCQGPILAKVRYFHWDGYPLTS--LPSNI-YP 180 (198)
Q Consensus 104 ~~v~~i~l~~~~~~~~~~~~~~f~~m~~Lr~L~l~~~~~~~~~~~~~~lp~~l~l~~Lr~L~~~~~~l~~--LP~~~-~l 180 (198)
..++.+.+.-.. -..+.+.+|.++++|++|++.+.. ...+|.. .+++|++|+++++.+.. +|..| .+
T Consensus 45 ~~L~~L~Ls~n~--l~~~~~~~~~~l~~L~~L~Ls~N~-------l~~lp~~-~l~~L~~L~L~~N~l~~~~~p~~~~~l 114 (520)
T 2z7x_B 45 SKLRILIISHNR--IQYLDISVFKFNQELEYLDLSHNK-------LVKISCH-PTVNLKHLDLSFNAFDALPICKEFGNM 114 (520)
T ss_dssp TTCCEEECCSSC--CCEEEGGGGTTCTTCCEEECCSSC-------CCEEECC-CCCCCSEEECCSSCCSSCCCCGGGGGC
T ss_pred ccccEEecCCCc--cCCcChHHhhcccCCCEEecCCCc-------eeecCcc-ccCCccEEeccCCccccccchhhhccC
Confidence 345554443332 234557899999999999998863 4467766 78899999999999876 56778 69
Q ss_pred CCceEEEcCCCCcc
Q 046172 181 DKLVFLEIPDSNIE 194 (198)
Q Consensus 181 ~~L~~L~L~~S~i~ 194 (198)
.+|++|+|+++.+.
T Consensus 115 ~~L~~L~L~~n~l~ 128 (520)
T 2z7x_B 115 SQLKFLGLSTTHLE 128 (520)
T ss_dssp TTCCEEEEEESSCC
T ss_pred CcceEEEecCcccc
Confidence 99999999998775
No 86
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=97.57 E-value=0.00015 Score=62.42 Aligned_cols=39 Identities=15% Similarity=0.165 Sum_probs=25.8
Q ss_pred Cc-cCCcceEEeCCCCCCCCCCCCCCCCceEEEcCCCCcc
Q 046172 156 PI-LAKVRYFHWDGYPLTSLPSNIYPDKLVFLEIPDSNIE 194 (198)
Q Consensus 156 l~-l~~Lr~L~~~~~~l~~LP~~~~l~~L~~L~L~~S~i~ 194 (198)
+. +++|++|+++++.+..+|.-..+.+|++|+|+++++.
T Consensus 192 ~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~ 231 (452)
T 3zyi_A 192 FEGLFNLKYLNLGMCNIKDMPNLTPLVGLEELEMSGNHFP 231 (452)
T ss_dssp TTTCTTCCEEECTTSCCSSCCCCTTCTTCCEEECTTSCCS
T ss_pred ccCCCCCCEEECCCCcccccccccccccccEEECcCCcCc
Confidence 44 6777777777777777765445666777777666654
No 87
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=97.54 E-value=8.8e-05 Score=58.34 Aligned_cols=68 Identities=15% Similarity=0.170 Sum_probs=46.2
Q ss_pred ccChhhhcCCccccEEEEecccccCCCccccccCCCCc-cCCcc---eEEeCCC-CCCCCCCC-C-CCCCce-EEEcCCC
Q 046172 120 GLNLDTFTKMHKLRFLKFYNSISEGKSKCMVSNCQGPI-LAKVR---YFHWDGY-PLTSLPSN-I-YPDKLV-FLEIPDS 191 (198)
Q Consensus 120 ~~~~~~f~~m~~Lr~L~l~~~~~~~~~~~~~~lp~~l~-l~~Lr---~L~~~~~-~l~~LP~~-~-~l~~L~-~L~L~~S 191 (198)
.+++.+|.++++|+.|++.+.. ...+|. +. +.+|+ +|++.++ .+..+|.. | .+.+|+ +|+|+++
T Consensus 95 ~i~~~~f~~l~~L~~L~l~~n~-------l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n 166 (239)
T 2xwt_C 95 YIDPDALKELPLLKFLGIFNTG-------LKMFPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNN 166 (239)
T ss_dssp EECTTSEECCTTCCEEEEEEEC-------CCSCCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSC
T ss_pred EcCHHHhCCCCCCCEEeCCCCC-------Cccccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCC
Confidence 3455667777777777776652 344665 55 55665 8888877 67777765 5 578888 8888887
Q ss_pred Cccc
Q 046172 192 NIEQ 195 (198)
Q Consensus 192 ~i~~ 195 (198)
+++.
T Consensus 167 ~l~~ 170 (239)
T 2xwt_C 167 GFTS 170 (239)
T ss_dssp CCCE
T ss_pred CCcc
Confidence 7754
No 88
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=97.53 E-value=0.00013 Score=63.95 Aligned_cols=62 Identities=15% Similarity=0.285 Sum_probs=41.7
Q ss_pred hhhcCCccccEEEEecccccCCCccccccCCCCc-cCCcceEEeCCCCCCCCCCCCCCCCceEEEcCCCCc
Q 046172 124 DTFTKMHKLRFLKFYNSISEGKSKCMVSNCQGPI-LAKVRYFHWDGYPLTSLPSNIYPDKLVFLEIPDSNI 193 (198)
Q Consensus 124 ~~f~~m~~Lr~L~l~~~~~~~~~~~~~~lp~~l~-l~~Lr~L~~~~~~l~~LP~~~~l~~L~~L~L~~S~i 193 (198)
..|.++++|+.|++.++. ...+|..+. +++|++|+++++.+..+|..+ +.+|++|+|+++++
T Consensus 381 ~~~~~l~~L~~L~Ls~N~-------l~~lp~~~~~~~~L~~L~Ls~N~l~~l~~~~-~~~L~~L~Ls~N~l 443 (549)
T 2z81_A 381 EILLTLKNLTSLDISRNT-------FHPMPDSCQWPEKMRFLNLSSTGIRVVKTCI-PQTLEVLDVSNNNL 443 (549)
T ss_dssp HHGGGCTTCCEEECTTCC-------CCCCCSCCCCCTTCCEEECTTSCCSCCCTTS-CTTCSEEECCSSCC
T ss_pred hhhhcCCCCCEEECCCCC-------CccCChhhcccccccEEECCCCCcccccchh-cCCceEEECCCCCh
Confidence 457777778888777653 346788777 888888888888887777654 23444444444443
No 89
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=97.53 E-value=0.0001 Score=59.96 Aligned_cols=69 Identities=16% Similarity=0.124 Sum_probs=48.3
Q ss_pred ChhhhcCCccccEEEEecccccCCCccccccCCCCc-cCCcceEEeCCCCCCCC-CCCC-CCCCceEEEcCCCCccc
Q 046172 122 NLDTFTKMHKLRFLKFYNSISEGKSKCMVSNCQGPI-LAKVRYFHWDGYPLTSL-PSNI-YPDKLVFLEIPDSNIEQ 195 (198)
Q Consensus 122 ~~~~f~~m~~Lr~L~l~~~~~~~~~~~~~~lp~~l~-l~~Lr~L~~~~~~l~~L-P~~~-~l~~L~~L~L~~S~i~~ 195 (198)
.+.+|.++++|+.|++.++.. ....+|..+. +++|++|+++++.+..+ |..| .+.+|++|+|+++++..
T Consensus 142 ~~~~~~~l~~L~~L~l~~n~l-----~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 213 (306)
T 2z66_A 142 FNGIFNGLSSLEVLKMAGNSF-----QENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFS 213 (306)
T ss_dssp STTTTTTCTTCCEEECTTCEE-----GGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSB
T ss_pred chhhcccCcCCCEEECCCCcc-----ccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCc
Confidence 344555666666666654321 0113688888 89999999999988877 5566 58899999999988764
No 90
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=97.53 E-value=0.00011 Score=57.86 Aligned_cols=64 Identities=16% Similarity=0.067 Sum_probs=40.1
Q ss_pred hcCCcccc---EEEEecccccCCCccccccCC-CCc-cCCcc-eEEeCCCCCCCCCCCC-CCCCceEEEcCCCC-ccc
Q 046172 126 FTKMHKLR---FLKFYNSISEGKSKCMVSNCQ-GPI-LAKVR-YFHWDGYPLTSLPSNI-YPDKLVFLEIPDSN-IEQ 195 (198)
Q Consensus 126 f~~m~~Lr---~L~l~~~~~~~~~~~~~~lp~-~l~-l~~Lr-~L~~~~~~l~~LP~~~-~l~~L~~L~L~~S~-i~~ 195 (198)
|.++.+|+ .|++.+.. ....+|. .+. +++|+ .|++.++.+..+|... ...+|++|+|++++ ++.
T Consensus 123 ~~~l~~L~~L~~L~l~~N~------~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~~~L~~L~L~~n~~l~~ 194 (239)
T 2xwt_C 123 LTKVYSTDIFFILEITDNP------YMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNGTKLDAVYLNKNKYLTV 194 (239)
T ss_dssp CTTCCBCCSEEEEEEESCT------TCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTTCEEEEEECTTCTTCCE
T ss_pred cccccccccccEEECCCCc------chhhcCcccccchhcceeEEEcCCCCCcccCHhhcCCCCCCEEEcCCCCCccc
Confidence 66666666 77776641 1234444 355 77777 7777777777777653 45677777777773 543
No 91
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=97.51 E-value=0.00014 Score=67.82 Aligned_cols=69 Identities=16% Similarity=0.106 Sum_probs=45.2
Q ss_pred ccChhhhcCCccccEEEEecccccCCCccccccCCC--Cc-cCCcceEEeCCCCCCCCC--CCC-CCCCceEEEcCCCCc
Q 046172 120 GLNLDTFTKMHKLRFLKFYNSISEGKSKCMVSNCQG--PI-LAKVRYFHWDGYPLTSLP--SNI-YPDKLVFLEIPDSNI 193 (198)
Q Consensus 120 ~~~~~~f~~m~~Lr~L~l~~~~~~~~~~~~~~lp~~--l~-l~~Lr~L~~~~~~l~~LP--~~~-~l~~L~~L~L~~S~i 193 (198)
.+.+.+|.++.+|+.|++.++.. ...+|.+ +. +++|+.|++.++.+..++ +.| ++.+|++|+|+++.+
T Consensus 87 ~~~p~~~~~l~~L~~L~Ls~n~l------~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i 160 (844)
T 3j0a_A 87 FLHPDAFQGLFHLFELRLYFCGL------SDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQI 160 (844)
T ss_dssp EECTTSSCSCSSCCCEECTTCCC------SSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCC
T ss_pred ccCHhHccCCcccCEeeCcCCCC------CcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcC
Confidence 34567777788888887776531 1123443 55 777888888777776654 345 577788888777766
Q ss_pred c
Q 046172 194 E 194 (198)
Q Consensus 194 ~ 194 (198)
.
T Consensus 161 ~ 161 (844)
T 3j0a_A 161 F 161 (844)
T ss_dssp C
T ss_pred C
Confidence 4
No 92
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=97.50 E-value=0.00015 Score=59.50 Aligned_cols=65 Identities=11% Similarity=0.102 Sum_probs=42.7
Q ss_pred hhhhcCCccccEEEEecccccCCCcccccc-C-CCCc-cCCcceEEeCCCCCCCCCCCCCCCCceEEEcCCCCccc
Q 046172 123 LDTFTKMHKLRFLKFYNSISEGKSKCMVSN-C-QGPI-LAKVRYFHWDGYPLTSLPSNIYPDKLVFLEIPDSNIEQ 195 (198)
Q Consensus 123 ~~~f~~m~~Lr~L~l~~~~~~~~~~~~~~l-p-~~l~-l~~Lr~L~~~~~~l~~LP~~~~l~~L~~L~L~~S~i~~ 195 (198)
...|.++++|+.|++.+.. .... | ..+. +++|++|+++++.+.++|..+. .+|++|+|++++|+.
T Consensus 221 ~~~~~~l~~L~~L~Ls~N~-------l~~~~~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~-~~L~~L~Ls~N~l~~ 288 (312)
T 1wwl_A 221 SALAAARVQLQGLDLSHNS-------LRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLP-AKLSVLDLSYNRLDR 288 (312)
T ss_dssp HHHHHTTCCCSEEECTTSC-------CCSSCCCSCCCCCTTCCEEECTTSCCSSCCSSCC-SEEEEEECCSSCCCS
T ss_pred HHHHhcCCCCCEEECCCCc-------CCcccchhhhhhcCCCCEEECCCCccChhhhhcc-CCceEEECCCCCCCC
Confidence 3455566666666666542 1222 2 2334 7788888888888888887776 778888888877764
No 93
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=97.49 E-value=2.3e-05 Score=59.03 Aligned_cols=81 Identities=12% Similarity=0.155 Sum_probs=62.4
Q ss_pred ceEEEEeeCCcccccccChhhhcCCccccEEEEecccccCCCccccccCC--CCc-cCCcceEEeCCCCCCCCCCC----
Q 046172 105 KIEGICFDMSKVKQIGLNLDTFTKMHKLRFLKFYNSISEGKSKCMVSNCQ--GPI-LAKVRYFHWDGYPLTSLPSN---- 177 (198)
Q Consensus 105 ~v~~i~l~~~~~~~~~~~~~~f~~m~~Lr~L~l~~~~~~~~~~~~~~lp~--~l~-l~~Lr~L~~~~~~l~~LP~~---- 177 (198)
.++.+.+.-... ..+++..|.++++|+.|++.+.. ...+|. .+. +++|+.|++.++++..+|..
T Consensus 65 ~L~~L~Ls~N~l--~~~~~~~~~~l~~L~~L~L~~N~-------i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~ 135 (176)
T 1a9n_A 65 RLKTLLVNNNRI--CRIGEGLDQALPDLTELILTNNS-------LVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYV 135 (176)
T ss_dssp SCCEEECCSSCC--CEECSCHHHHCTTCCEEECCSCC-------CCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHH
T ss_pred CCCEEECCCCcc--cccCcchhhcCCCCCEEECCCCc-------CCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHH
Confidence 444444433322 24566778999999999998863 456676 777 99999999999999999985
Q ss_pred C-CCCCceEEEcCCCCcc
Q 046172 178 I-YPDKLVFLEIPDSNIE 194 (198)
Q Consensus 178 ~-~l~~L~~L~L~~S~i~ 194 (198)
+ .+.+|+.|+++.++++
T Consensus 136 ~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 136 IYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp HHHCTTCSEETTEECCHH
T ss_pred HHHCCccceeCCCcCCHH
Confidence 6 6999999999988764
No 94
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=97.48 E-value=0.00011 Score=64.97 Aligned_cols=81 Identities=15% Similarity=0.235 Sum_probs=61.7
Q ss_pred cceEEEEeeCCcccccccChhhhcCCccccEEEEecccccCCCccccccCCCCccCCcceEEeCCCCCCCCC--CCC-CC
Q 046172 104 EKIEGICFDMSKVKQIGLNLDTFTKMHKLRFLKFYNSISEGKSKCMVSNCQGPILAKVRYFHWDGYPLTSLP--SNI-YP 180 (198)
Q Consensus 104 ~~v~~i~l~~~~~~~~~~~~~~f~~m~~Lr~L~l~~~~~~~~~~~~~~lp~~l~l~~Lr~L~~~~~~l~~LP--~~~-~l 180 (198)
..++.+.+.-.. -..+.+.+|.++++|++|++.+.. ...+|.. .+++|++|+++++.+..+| ..| .+
T Consensus 76 ~~L~~L~Ls~N~--l~~~~~~~~~~l~~L~~L~Ls~N~-------l~~lp~~-~l~~L~~L~Ls~N~l~~l~~p~~~~~l 145 (562)
T 3a79_B 76 SELRVLRLSHNR--IRSLDFHVFLFNQDLEYLDVSHNR-------LQNISCC-PMASLRHLDLSFNDFDVLPVCKEFGNL 145 (562)
T ss_dssp TTCCEEECCSCC--CCEECTTTTTTCTTCCEEECTTSC-------CCEECSC-CCTTCSEEECCSSCCSBCCCCGGGGGC
T ss_pred CCccEEECCCCC--CCcCCHHHhCCCCCCCEEECCCCc-------CCccCcc-ccccCCEEECCCCCccccCchHhhccc
Confidence 345555554332 235667889999999999998763 4567776 7889999999999988765 567 68
Q ss_pred CCceEEEcCCCCcc
Q 046172 181 DKLVFLEIPDSNIE 194 (198)
Q Consensus 181 ~~L~~L~L~~S~i~ 194 (198)
.+|++|+|+++++.
T Consensus 146 ~~L~~L~L~~n~l~ 159 (562)
T 3a79_B 146 TKLTFLGLSAAKFR 159 (562)
T ss_dssp TTCCEEEEECSBCC
T ss_pred CcccEEecCCCccc
Confidence 99999999998875
No 95
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=97.46 E-value=0.00025 Score=56.97 Aligned_cols=62 Identities=19% Similarity=0.177 Sum_probs=41.0
Q ss_pred hcCCccccEEEEecccccCCCccccccCCCCccCCcceEEeCCCCCCCCCCCCCCCCceEEEcCCCCccc
Q 046172 126 FTKMHKLRFLKFYNSISEGKSKCMVSNCQGPILAKVRYFHWDGYPLTSLPSNIYPDKLVFLEIPDSNIEQ 195 (198)
Q Consensus 126 f~~m~~Lr~L~l~~~~~~~~~~~~~~lp~~l~l~~Lr~L~~~~~~l~~LP~~~~l~~L~~L~L~~S~i~~ 195 (198)
|.++++|+.|++.++. ...+|.... .+|+.|+++++.+..+|.--.+.+|++|+|++++|+.
T Consensus 81 l~~l~~L~~L~L~~N~-------l~~l~~~~~-~~L~~L~L~~N~l~~~~~l~~l~~L~~L~Ls~N~i~~ 142 (263)
T 1xeu_A 81 LKDLTKLEELSVNRNR-------LKNLNGIPS-ACLSRLFLDNNELRDTDSLIHLKNLEILSIRNNKLKS 142 (263)
T ss_dssp GTTCSSCCEEECCSSC-------CSCCTTCCC-SSCCEEECCSSCCSBSGGGTTCTTCCEEECTTSCCCB
T ss_pred hccCCCCCEEECCCCc-------cCCcCcccc-CcccEEEccCCccCCChhhcCcccccEEECCCCcCCC
Confidence 6777777777776652 233343222 6777777777777777643367888888888877764
No 96
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=97.42 E-value=0.00024 Score=61.38 Aligned_cols=69 Identities=14% Similarity=0.114 Sum_probs=41.0
Q ss_pred cChhhhcCCccccEEEEecccccCCCccccccCCCCc-cCCcceEEeCCCCCCCCCC-CC-CCCCceEEEcCCCCccc
Q 046172 121 LNLDTFTKMHKLRFLKFYNSISEGKSKCMVSNCQGPI-LAKVRYFHWDGYPLTSLPS-NI-YPDKLVFLEIPDSNIEQ 195 (198)
Q Consensus 121 ~~~~~f~~m~~Lr~L~l~~~~~~~~~~~~~~lp~~l~-l~~Lr~L~~~~~~l~~LP~-~~-~l~~L~~L~L~~S~i~~ 195 (198)
++..+|.++++|+.|++.++.. ....|..+. +++|+.|++.++.+..++. .| .+.+|++|+|+++++..
T Consensus 95 ~~~~~~~~l~~L~~L~Ls~n~i------~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 166 (477)
T 2id5_A 95 IPLGVFTGLSNLTKLDISENKI------VILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTS 166 (477)
T ss_dssp CCTTSSTTCTTCCEEECTTSCC------CEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSS
T ss_pred cCcccccCCCCCCEEECCCCcc------ccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcc
Confidence 4445566666666666655421 122345556 7777777777777665543 45 47777777777776654
No 97
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=97.41 E-value=0.00022 Score=58.50 Aligned_cols=59 Identities=12% Similarity=0.079 Sum_probs=29.6
Q ss_pred cCCccccEEEEecccccCCCccccccCCCCc-c-----CCcceEEeCCCCCCCCC-CCC-CCCCceEEEcCCCC
Q 046172 127 TKMHKLRFLKFYNSISEGKSKCMVSNCQGPI-L-----AKVRYFHWDGYPLTSLP-SNI-YPDKLVFLEIPDSN 192 (198)
Q Consensus 127 ~~m~~Lr~L~l~~~~~~~~~~~~~~lp~~l~-l-----~~Lr~L~~~~~~l~~LP-~~~-~l~~L~~L~L~~S~ 192 (198)
.++++|+.|++.+.. ...+|..+. + ++|++|++.++.+..+| ..| .+.+|++|+|++++
T Consensus 118 ~~l~~L~~L~Ls~N~-------l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~ 184 (312)
T 1wwl_A 118 ATGPDLNILNLRNVS-------WATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNP 184 (312)
T ss_dssp CCSCCCSEEEEESCB-------CSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCT
T ss_pred hcCCCccEEEccCCC-------CcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCC
Confidence 555566666665542 222243333 3 55555555555555544 334 35555555555554
No 98
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=97.40 E-value=0.00011 Score=59.17 Aligned_cols=79 Identities=14% Similarity=0.119 Sum_probs=59.7
Q ss_pred cceEEEEeeCCcccccccChhhhcCCccccEEEEecccccCCCccccccCCCCc-cCCcceEEeCCCCCCCCCCCCCCCC
Q 046172 104 EKIEGICFDMSKVKQIGLNLDTFTKMHKLRFLKFYNSISEGKSKCMVSNCQGPI-LAKVRYFHWDGYPLTSLPSNIYPDK 182 (198)
Q Consensus 104 ~~v~~i~l~~~~~~~~~~~~~~f~~m~~Lr~L~l~~~~~~~~~~~~~~lp~~l~-l~~Lr~L~~~~~~l~~LP~~~~l~~ 182 (198)
.+++.+.+.-.... .++ .|.++++|+.|++.++. ...+|. +. +++|++|+++++.+..+|.... .+
T Consensus 41 ~~L~~L~l~~n~i~--~l~--~l~~l~~L~~L~L~~N~-------i~~~~~-l~~l~~L~~L~L~~N~l~~l~~~~~-~~ 107 (263)
T 1xeu_A 41 SGVQNFNGDNSNIQ--SLA--GMQFFTNLKELHLSHNQ-------ISDLSP-LKDLTKLEELSVNRNRLKNLNGIPS-AC 107 (263)
T ss_dssp TTCSEEECTTSCCC--CCT--TGGGCTTCCEEECCSSC-------CCCCGG-GTTCSSCCEEECCSSCCSCCTTCCC-SS
T ss_pred CcCcEEECcCCCcc--cch--HHhhCCCCCEEECCCCc-------cCCChh-hccCCCCCEEECCCCccCCcCcccc-Cc
Confidence 45565555433322 222 68899999999998763 345555 77 9999999999999999987656 99
Q ss_pred ceEEEcCCCCccc
Q 046172 183 LVFLEIPDSNIEQ 195 (198)
Q Consensus 183 L~~L~L~~S~i~~ 195 (198)
|++|+|+++++..
T Consensus 108 L~~L~L~~N~l~~ 120 (263)
T 1xeu_A 108 LSRLFLDNNELRD 120 (263)
T ss_dssp CCEEECCSSCCSB
T ss_pred ccEEEccCCccCC
Confidence 9999999998865
No 99
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=97.39 E-value=0.0003 Score=57.75 Aligned_cols=62 Identities=11% Similarity=0.129 Sum_probs=47.5
Q ss_pred hcCCccccEEEEecccccCCCccccccCCCCc-cCCcceEEeCCCCCCCCCCCCCCCCceEEEcCCCCccc
Q 046172 126 FTKMHKLRFLKFYNSISEGKSKCMVSNCQGPI-LAKVRYFHWDGYPLTSLPSNIYPDKLVFLEIPDSNIEQ 195 (198)
Q Consensus 126 f~~m~~Lr~L~l~~~~~~~~~~~~~~lp~~l~-l~~Lr~L~~~~~~l~~LP~~~~l~~L~~L~L~~S~i~~ 195 (198)
|.++++|+.|++.++. ...+| .+. +++|+.|++.++.+..+|.--.+.+|++|+|+++++..
T Consensus 81 ~~~l~~L~~L~L~~n~-------l~~~~-~~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~ 143 (308)
T 1h6u_A 81 LKNLTKITELELSGNP-------LKNVS-AIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLDLNQITN 143 (308)
T ss_dssp GTTCCSCCEEECCSCC-------CSCCG-GGTTCTTCCEEECTTSCCCCCGGGTTCTTCCEEECCSSCCCC
T ss_pred HccCCCCCEEEccCCc-------CCCch-hhcCCCCCCEEECCCCCCCCchhhcCCCCCCEEECCCCccCc
Confidence 7888888888887753 22333 566 88899999998888888863368899999998887764
No 100
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=97.39 E-value=0.00026 Score=58.38 Aligned_cols=59 Identities=12% Similarity=0.119 Sum_probs=43.2
Q ss_pred hcCCccccEEEEecccccCCCccccccCCCCc-cCCcceEEeCCCCCCCCCCCCCCCCceEEEcCCCC
Q 046172 126 FTKMHKLRFLKFYNSISEGKSKCMVSNCQGPI-LAKVRYFHWDGYPLTSLPSNIYPDKLVFLEIPDSN 192 (198)
Q Consensus 126 f~~m~~Lr~L~l~~~~~~~~~~~~~~lp~~l~-l~~Lr~L~~~~~~l~~LP~~~~l~~L~~L~L~~S~ 192 (198)
|.++++|+.|++.++. ...+| .+. +++|++|++.++.+..+|.-..+.+|++|+++++.
T Consensus 84 ~~~l~~L~~L~L~~n~-------i~~~~-~~~~l~~L~~L~l~~n~i~~~~~~~~l~~L~~L~l~~n~ 143 (347)
T 4fmz_A 84 LSNLVKLTNLYIGTNK-------ITDIS-ALQNLTNLRELYLNEDNISDISPLANLTKMYSLNLGANH 143 (347)
T ss_dssp GTTCTTCCEEECCSSC-------CCCCG-GGTTCTTCSEEECTTSCCCCCGGGTTCTTCCEEECTTCT
T ss_pred hhcCCcCCEEEccCCc-------ccCch-HHcCCCcCCEEECcCCcccCchhhccCCceeEEECCCCC
Confidence 7788888888887653 22333 466 88888888888888888773368888888888773
No 101
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=97.37 E-value=0.00027 Score=57.56 Aligned_cols=63 Identities=17% Similarity=0.242 Sum_probs=43.8
Q ss_pred hhcCCccccEEEEecccccCCCccccccCCCCc-cCCcceEEeCCCCCCCCCCCCCCCCceEEEcCCCCccc
Q 046172 125 TFTKMHKLRFLKFYNSISEGKSKCMVSNCQGPI-LAKVRYFHWDGYPLTSLPSNIYPDKLVFLEIPDSNIEQ 195 (198)
Q Consensus 125 ~f~~m~~Lr~L~l~~~~~~~~~~~~~~lp~~l~-l~~Lr~L~~~~~~l~~LP~~~~l~~L~~L~L~~S~i~~ 195 (198)
.|.++++|+.|++.++. ...+ .++. +++|+.|+++++.+..+|.-..+.+|++|+|+++++..
T Consensus 107 ~l~~l~~L~~L~L~~n~-------i~~~-~~l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~N~l~~ 170 (291)
T 1h6t_A 107 SLKDLKKLKSLSLEHNG-------ISDI-NGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISD 170 (291)
T ss_dssp GGTTCTTCCEEECTTSC-------CCCC-GGGGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCC
T ss_pred hhccCCCCCEEECCCCc-------CCCC-hhhcCCCCCCEEEccCCcCCcchhhccCCCCCEEEccCCcccc
Confidence 47777777777776653 2223 3466 78888888888888877433368888888888887764
No 102
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=97.37 E-value=0.00026 Score=57.73 Aligned_cols=63 Identities=11% Similarity=0.176 Sum_probs=48.4
Q ss_pred hcCCccccEEEEecccccCCCccccccCCCCc-cCCcceEEeCCCCCCCCCCCCCCCCceEEEcCCCCcccC
Q 046172 126 FTKMHKLRFLKFYNSISEGKSKCMVSNCQGPI-LAKVRYFHWDGYPLTSLPSNIYPDKLVFLEIPDSNIEQL 196 (198)
Q Consensus 126 f~~m~~Lr~L~l~~~~~~~~~~~~~~lp~~l~-l~~Lr~L~~~~~~l~~LP~~~~l~~L~~L~L~~S~i~~L 196 (198)
|.++++|+.|++.++. ...+| .+. +++|++|++.++.+..+|.-..+.+|++|+|+++++..+
T Consensus 86 l~~l~~L~~L~l~~n~-------l~~~~-~l~~l~~L~~L~L~~n~i~~~~~l~~l~~L~~L~l~~n~l~~~ 149 (291)
T 1h6t_A 86 LANLKNLGWLFLDENK-------VKDLS-SLKDLKKLKSLSLEHNGISDINGLVHLPQLESLYLGNNKITDI 149 (291)
T ss_dssp GTTCTTCCEEECCSSC-------CCCGG-GGTTCTTCCEEECTTSCCCCCGGGGGCTTCCEEECCSSCCCCC
T ss_pred cccCCCCCEEECCCCc-------CCCCh-hhccCCCCCEEECCCCcCCCChhhcCCCCCCEEEccCCcCCcc
Confidence 7888888888887753 23344 367 889999999999888886444788999999999887653
No 103
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=97.36 E-value=0.00021 Score=65.85 Aligned_cols=78 Identities=17% Similarity=0.119 Sum_probs=59.0
Q ss_pred eeCCcccccccChhhhcCCccccEEEEecccccCCCccccccCCCCc-cCCcceEEeCCCCCC-CCCCCC-CCCCceEEE
Q 046172 111 FDMSKVKQIGLNLDTFTKMHKLRFLKFYNSISEGKSKCMVSNCQGPI-LAKVRYFHWDGYPLT-SLPSNI-YPDKLVFLE 187 (198)
Q Consensus 111 l~~~~~~~~~~~~~~f~~m~~Lr~L~l~~~~~~~~~~~~~~lp~~l~-l~~Lr~L~~~~~~l~-~LP~~~-~l~~L~~L~ 187 (198)
+|++...-....+..|+++++|+.|++++... ...+|..+. +++|+.|+++++.+. .+|..+ .+.+|++|+
T Consensus 637 LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l------~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ 710 (768)
T 3rgz_A 637 LDMSYNMLSGYIPKEIGSMPYLFILNLGHNDI------SGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEID 710 (768)
T ss_dssp EECCSSCCBSCCCGGGGGCTTCCEEECCSSCC------CSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEE
T ss_pred EECcCCcccccCCHHHhccccCCEEeCcCCcc------CCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEE
Confidence 44444322224467788899999999987531 236788888 999999999999886 788888 689999999
Q ss_pred cCCCCcc
Q 046172 188 IPDSNIE 194 (198)
Q Consensus 188 L~~S~i~ 194 (198)
|+++++.
T Consensus 711 ls~N~l~ 717 (768)
T 3rgz_A 711 LSNNNLS 717 (768)
T ss_dssp CCSSEEE
T ss_pred CcCCccc
Confidence 9998774
No 104
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=97.35 E-value=0.00036 Score=57.25 Aligned_cols=80 Identities=13% Similarity=0.221 Sum_probs=59.6
Q ss_pred cceEEEEeeCCcccccccChhhhcCCccccEEEEecccccCCCccccccCCCCc-cCCcceEEeCCCCCCCCCCCCCCCC
Q 046172 104 EKIEGICFDMSKVKQIGLNLDTFTKMHKLRFLKFYNSISEGKSKCMVSNCQGPI-LAKVRYFHWDGYPLTSLPSNIYPDK 182 (198)
Q Consensus 104 ~~v~~i~l~~~~~~~~~~~~~~f~~m~~Lr~L~l~~~~~~~~~~~~~~lp~~l~-l~~Lr~L~~~~~~l~~LP~~~~l~~ 182 (198)
.+++.+.+.-..... + .+|.++++|+.|++.++. ...+|. +. +++|+.|+++++.+..+|.--.+.+
T Consensus 85 ~~L~~L~L~~n~l~~--~--~~~~~l~~L~~L~l~~n~-------l~~~~~-l~~l~~L~~L~l~~n~l~~~~~l~~l~~ 152 (308)
T 1h6u_A 85 TKITELELSGNPLKN--V--SAIAGLQSIKTLDLTSTQ-------ITDVTP-LAGLSNLQVLYLDLNQITNISPLAGLTN 152 (308)
T ss_dssp CSCCEEECCSCCCSC--C--GGGTTCTTCCEEECTTSC-------CCCCGG-GTTCTTCCEEECCSSCCCCCGGGGGCTT
T ss_pred CCCCEEEccCCcCCC--c--hhhcCCCCCCEEECCCCC-------CCCchh-hcCCCCCCEEECCCCccCcCccccCCCC
Confidence 445555554333222 2 478999999999998863 334443 77 9999999999999999987337999
Q ss_pred ceEEEcCCCCccc
Q 046172 183 LVFLEIPDSNIEQ 195 (198)
Q Consensus 183 L~~L~L~~S~i~~ 195 (198)
|++|+|+++++..
T Consensus 153 L~~L~l~~n~l~~ 165 (308)
T 1h6u_A 153 LQYLSIGNAQVSD 165 (308)
T ss_dssp CCEEECCSSCCCC
T ss_pred ccEEEccCCcCCC
Confidence 9999999998764
No 105
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=97.34 E-value=0.00017 Score=59.23 Aligned_cols=38 Identities=8% Similarity=0.235 Sum_probs=27.2
Q ss_pred cCCcceEEeCCCCCCCCCCCC-CCCCceEEEcCCCCccc
Q 046172 158 LAKVRYFHWDGYPLTSLPSNI-YPDKLVFLEIPDSNIEQ 195 (198)
Q Consensus 158 l~~Lr~L~~~~~~l~~LP~~~-~l~~L~~L~L~~S~i~~ 195 (198)
+++|+.|+++++.+..+|..| .+.+|++|+|+++++..
T Consensus 190 l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~L~~N~l~~ 228 (317)
T 3o53_A 190 FAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVL 228 (317)
T ss_dssp CTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCCE
T ss_pred cccCCEEECCCCcCCcchhhhcccCcccEEECcCCcccc
Confidence 667777777777777777666 47777777777776653
No 106
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=97.33 E-value=0.00025 Score=58.28 Aligned_cols=46 Identities=9% Similarity=0.148 Sum_probs=41.3
Q ss_pred ccccCCCCc-cCCcceEEeCCCCCCCCCCCC-CCCCceEEEcCCCCcc
Q 046172 149 MVSNCQGPI-LAKVRYFHWDGYPLTSLPSNI-YPDKLVFLEIPDSNIE 194 (198)
Q Consensus 149 ~~~lp~~l~-l~~Lr~L~~~~~~l~~LP~~~-~l~~L~~L~L~~S~i~ 194 (198)
...+|.++. +++|+.|+++++.+..+|..+ .+.+|+.|+|+++.+.
T Consensus 203 l~~l~~~~~~l~~L~~L~L~~N~l~~l~~~~~~l~~L~~L~l~~N~~~ 250 (317)
T 3o53_A 203 LAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFH 250 (317)
T ss_dssp CCEECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCCB
T ss_pred CCcchhhhcccCcccEEECcCCcccchhhHhhcCCCCCEEEccCCCcc
Confidence 456777788 999999999999999999998 6999999999999876
No 107
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=97.33 E-value=6.7e-06 Score=63.23 Aligned_cols=62 Identities=16% Similarity=0.161 Sum_probs=35.4
Q ss_pred hhcCCccccEEEEecccccCCCccccccCCCCc-cCCcceEEeCCCCCCCCCCCC-CCCCceEEEcCCCCcc
Q 046172 125 TFTKMHKLRFLKFYNSISEGKSKCMVSNCQGPI-LAKVRYFHWDGYPLTSLPSNI-YPDKLVFLEIPDSNIE 194 (198)
Q Consensus 125 ~f~~m~~Lr~L~l~~~~~~~~~~~~~~lp~~l~-l~~Lr~L~~~~~~l~~LP~~~-~l~~L~~L~L~~S~i~ 194 (198)
.|.++++|+.|++.++. ...+|..+. +++|++|+++++.+..+| .+ .+.+|++|+|+++++.
T Consensus 65 ~~~~l~~L~~L~l~~n~-------l~~l~~~~~~~~~L~~L~L~~N~l~~l~-~~~~l~~L~~L~l~~N~i~ 128 (198)
T 1ds9_A 65 SLSGMENLRILSLGRNL-------IKKIENLDAVADTLEELWISYNQIASLS-GIEKLVNLRVLYMSNNKIT 128 (198)
T ss_dssp CHHHHTTCCEEEEEEEE-------ECSCSSHHHHHHHCSEEEEEEEECCCHH-HHHHHHHSSEEEESEEECC
T ss_pred ccccCCCCCEEECCCCC-------cccccchhhcCCcCCEEECcCCcCCcCC-ccccCCCCCEEECCCCcCC
Confidence 55566666666665542 234555444 566666666666666665 34 4566666666665554
No 108
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=97.32 E-value=0.00034 Score=65.90 Aligned_cols=61 Identities=15% Similarity=0.116 Sum_probs=27.8
Q ss_pred hhcCCccccEEEEecccccCCCccccccCCCCc-cCCcceEEeCCCCCCCCCCCC-CCCC-ceEEEcCCCCc
Q 046172 125 TFTKMHKLRFLKFYNSISEGKSKCMVSNCQGPI-LAKVRYFHWDGYPLTSLPSNI-YPDK-LVFLEIPDSNI 193 (198)
Q Consensus 125 ~f~~m~~Lr~L~l~~~~~~~~~~~~~~lp~~l~-l~~Lr~L~~~~~~l~~LP~~~-~l~~-L~~L~L~~S~i 193 (198)
.|.++++|+.|++.++. ...+| .+. +++|+.|++.++.+..+|..+ .+.+ |++|+|+++++
T Consensus 568 ~l~~L~~L~~L~Ls~N~-------l~~lp-~~~~L~~L~~L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~N~L 631 (876)
T 4ecn_A 568 SLQKMVKLGLLDCVHNK-------VRHLE-AFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKL 631 (876)
T ss_dssp HHTTCTTCCEEECTTSC-------CCBCC-CCCTTSEESEEECCSSCCSCCCTTSCEECTTCCEEECCSSCC
T ss_pred hhhcCCCCCEEECCCCC-------cccch-hhcCCCcceEEECcCCccccchHHHhhccccCCEEECcCCCC
Confidence 56666666666665542 11333 333 444444444444444444443 2333 44444444433
No 109
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=97.30 E-value=0.00057 Score=61.70 Aligned_cols=69 Identities=10% Similarity=0.074 Sum_probs=40.6
Q ss_pred hhcCCccccEEEEecccccCCCccccccCCCCc-cCCcceEEeCCCCCCCCCCCCCCCCceEEEcCCCCcc
Q 046172 125 TFTKMHKLRFLKFYNSISEGKSKCMVSNCQGPI-LAKVRYFHWDGYPLTSLPSNIYPDKLVFLEIPDSNIE 194 (198)
Q Consensus 125 ~f~~m~~Lr~L~l~~~~~~~~~~~~~~lp~~l~-l~~Lr~L~~~~~~l~~LP~~~~l~~L~~L~L~~S~i~ 194 (198)
.+.++++|+.|++.+............+|..+. +++|+.|+++++.+.++|..+. .+|++|+|+++.+.
T Consensus 531 ~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~ip~~~~-~~L~~L~Ls~N~l~ 600 (636)
T 4eco_A 531 QPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRKVNEKIT-PNISVLDIKDNPNI 600 (636)
T ss_dssp GGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCCCBCCSCCC-TTCCEEECCSCTTC
T ss_pred hhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcCCccCHhHh-CcCCEEECcCCCCc
Confidence 344555555555533110000001235677777 7777777777777777777665 57777777777664
No 110
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=97.30 E-value=0.00021 Score=58.47 Aligned_cols=63 Identities=10% Similarity=0.111 Sum_probs=44.5
Q ss_pred hcCCccccEEEEecccccCCCcccccc-CCCCc-c---CCcceEEeCCCCCCCCCCCCCCCCceEEEcCCCCcccC
Q 046172 126 FTKMHKLRFLKFYNSISEGKSKCMVSN-CQGPI-L---AKVRYFHWDGYPLTSLPSNIYPDKLVFLEIPDSNIEQL 196 (198)
Q Consensus 126 f~~m~~Lr~L~l~~~~~~~~~~~~~~l-p~~l~-l---~~Lr~L~~~~~~l~~LP~~~~l~~L~~L~L~~S~i~~L 196 (198)
|.++++|+.|++++.. ...+ |..+. + ++|+.|+++++.+..+|..+. .+|++|+|++++|..+
T Consensus 220 ~~~l~~L~~L~Ls~N~-------l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~-~~L~~L~Ls~N~l~~~ 287 (310)
T 4glp_A 220 AAAGVQPHSLDLSHNS-------LRATVNPSAPRCMWSSALNSLNLSFAGLEQVPKGLP-AKLRVLDLSSNRLNRA 287 (310)
T ss_dssp HHHTCCCSSEECTTSC-------CCCCCCSCCSSCCCCTTCCCEECCSSCCCSCCSCCC-SCCSCEECCSCCCCSC
T ss_pred HhcCCCCCEEECCCCC-------CCccchhhHHhccCcCcCCEEECCCCCCCchhhhhc-CCCCEEECCCCcCCCC
Confidence 4555666666665542 2233 66665 3 689999999888888888775 7889999988888653
No 111
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=97.26 E-value=0.00023 Score=62.35 Aligned_cols=37 Identities=8% Similarity=0.256 Sum_probs=25.3
Q ss_pred cCCcceEEeCCCCCCCCCCCC-CCCCceEEEcCCCCcc
Q 046172 158 LAKVRYFHWDGYPLTSLPSNI-YPDKLVFLEIPDSNIE 194 (198)
Q Consensus 158 l~~Lr~L~~~~~~l~~LP~~~-~l~~L~~L~L~~S~i~ 194 (198)
+++|++|+++++.+..+|+.| .+.+|..|+|+++.+.
T Consensus 190 l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~l~ 227 (487)
T 3oja_A 190 FAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLV 227 (487)
T ss_dssp CTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCC
T ss_pred CCCCCEEECCCCCCCCCCHhHcCCCCccEEEecCCcCc
Confidence 666777777777776666666 4667777777776664
No 112
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=97.24 E-value=0.00043 Score=59.83 Aligned_cols=62 Identities=15% Similarity=0.117 Sum_probs=42.7
Q ss_pred hcCCccccEEEEecccccCCCccccccCCCCc-cCCcceEEeCCCCCCCCCCCCCCCCceEEEcCCCCccc
Q 046172 126 FTKMHKLRFLKFYNSISEGKSKCMVSNCQGPI-LAKVRYFHWDGYPLTSLPSNIYPDKLVFLEIPDSNIEQ 195 (198)
Q Consensus 126 f~~m~~Lr~L~l~~~~~~~~~~~~~~lp~~l~-l~~Lr~L~~~~~~l~~LP~~~~l~~L~~L~L~~S~i~~ 195 (198)
|.++++|+.|++.++. ...+|. +. +++|++|++.++.+..+|.-..+.+|++|+|+++++..
T Consensus 86 ~~~l~~L~~L~l~~n~-------l~~~~~-~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~~n~l~~ 148 (466)
T 1o6v_A 86 LKNLTKLVDILMNNNQ-------IADITP-LANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISD 148 (466)
T ss_dssp GTTCTTCCEEECCSSC-------CCCCGG-GTTCTTCCEEECCSSCCCCCGGGTTCTTCSEEEEEEEEECC
T ss_pred hhccccCCEEECCCCc-------cccChh-hcCCCCCCEEECCCCCCCCChHHcCCCCCCEEECCCCccCC
Confidence 7777777777776653 233443 66 77888888888777777763367888888887776653
No 113
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=97.23 E-value=0.00062 Score=61.46 Aligned_cols=69 Identities=10% Similarity=0.118 Sum_probs=42.6
Q ss_pred ccChhhhcCCccccEEEEecccccCCCccccccCCCCc--cC-------CcceEEeCCCCCCCCCCCC---CCCCceEEE
Q 046172 120 GLNLDTFTKMHKLRFLKFYNSISEGKSKCMVSNCQGPI--LA-------KVRYFHWDGYPLTSLPSNI---YPDKLVFLE 187 (198)
Q Consensus 120 ~~~~~~f~~m~~Lr~L~l~~~~~~~~~~~~~~lp~~l~--l~-------~Lr~L~~~~~~l~~LP~~~---~l~~L~~L~ 187 (198)
.++...|..+++|+.|++.++. ...+|.+.. +. +|+.|++.++.+..+|..+ .+.+|++|+
T Consensus 447 ~lp~~~~~~l~~L~~L~Ls~N~-------l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~ 519 (636)
T 4eco_A 447 KFPKELFSTGSPLSSINLMGNM-------LTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGID 519 (636)
T ss_dssp SCCTHHHHTTCCCSEEECCSSC-------CSBCCSSSSEETTEECTTGGGCCEEECCSSCCCBCCGGGSTTTCTTCCEEE
T ss_pred cCCHHHHccCCCCCEEECCCCC-------CCCcCHHHhccccccccccCCccEEECcCCcCCccChhhhhccCCCcCEEE
Confidence 5666777788888888887653 234555443 22 6666666666666666554 466666666
Q ss_pred cCCCCccc
Q 046172 188 IPDSNIEQ 195 (198)
Q Consensus 188 L~~S~i~~ 195 (198)
|+++++..
T Consensus 520 Ls~N~l~~ 527 (636)
T 4eco_A 520 LSYNSFSK 527 (636)
T ss_dssp CCSSCCSS
T ss_pred CCCCCCCC
Confidence 66665543
No 114
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=97.23 E-value=0.00052 Score=62.00 Aligned_cols=63 Identities=17% Similarity=0.242 Sum_probs=41.4
Q ss_pred hhcCCccccEEEEecccccCCCccccccCCCCc-cCCcceEEeCCCCCCCCCCCCCCCCceEEEcCCCCccc
Q 046172 125 TFTKMHKLRFLKFYNSISEGKSKCMVSNCQGPI-LAKVRYFHWDGYPLTSLPSNIYPDKLVFLEIPDSNIEQ 195 (198)
Q Consensus 125 ~f~~m~~Lr~L~l~~~~~~~~~~~~~~lp~~l~-l~~Lr~L~~~~~~l~~LP~~~~l~~L~~L~L~~S~i~~ 195 (198)
.|.++++|+.|++.++. ...+ .++. +++|+.|+++++.+..+|.--.+.+|++|+|++++|..
T Consensus 104 ~l~~l~~L~~L~Ls~N~-------l~~l-~~l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~ 167 (605)
T 1m9s_A 104 SLKDLKKLKSLSLEHNG-------ISDI-NGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISD 167 (605)
T ss_dssp TSTTCTTCCEEECTTSC-------CCCC-GGGGGCTTCSEEECCSSCCCCCGGGGSCTTCSEEECCSSCCCC
T ss_pred hhccCCCCCEEEecCCC-------CCCC-ccccCCCccCEEECCCCccCCchhhcccCCCCEEECcCCcCCC
Confidence 56667777777776542 2222 3455 77788888877777777433367788888888777654
No 115
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=97.18 E-value=0.00029 Score=61.71 Aligned_cols=45 Identities=9% Similarity=0.131 Sum_probs=35.1
Q ss_pred cccCCCCc-cCCcceEEeCCCCCCCCCCCC-CCCCceEEEcCCCCcc
Q 046172 150 VSNCQGPI-LAKVRYFHWDGYPLTSLPSNI-YPDKLVFLEIPDSNIE 194 (198)
Q Consensus 150 ~~lp~~l~-l~~Lr~L~~~~~~l~~LP~~~-~l~~L~~L~L~~S~i~ 194 (198)
..+|.++. +++|+.|+++++.+..+|..+ .+.+|..|+++++.+.
T Consensus 204 ~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~l~~N~l~ 250 (487)
T 3oja_A 204 AFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFH 250 (487)
T ss_dssp CEECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCBC
T ss_pred CCCCHhHcCCCCccEEEecCCcCcccchhhccCCCCCEEEcCCCCCc
Confidence 45666677 888888888888888888877 5788888888887764
No 116
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=97.17 E-value=0.00078 Score=63.43 Aligned_cols=69 Identities=13% Similarity=0.111 Sum_probs=46.4
Q ss_pred ccChhhhcCCccccEEEEecccccCCCccccccCCCCc-cC--------CcceEEeCCCCCCCCCCCC---CCCCceEEE
Q 046172 120 GLNLDTFTKMHKLRFLKFYNSISEGKSKCMVSNCQGPI-LA--------KVRYFHWDGYPLTSLPSNI---YPDKLVFLE 187 (198)
Q Consensus 120 ~~~~~~f~~m~~Lr~L~l~~~~~~~~~~~~~~lp~~l~-l~--------~Lr~L~~~~~~l~~LP~~~---~l~~L~~L~ 187 (198)
.++...|.++++|+.|++.++. ...+|.++. .. +|+.|++.++.+..+|..+ .+.+|+.|+
T Consensus 687 ~lp~~~~~~l~~L~~L~Ls~N~-------L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~~lp~~l~~~~l~~L~~L~ 759 (876)
T 4ecn_A 687 KFPTELFATGSPISTIILSNNL-------MTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMD 759 (876)
T ss_dssp SCCHHHHHTTCCCSEEECCSCC-------CSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCCCCCGGGSTTTCTTCCEEE
T ss_pred ccCHHHHccCCCCCEEECCCCc-------CCccChHHhccccccccccCCccEEECCCCCCccchHHhhhccCCCcCEEE
Confidence 5667777888888888887753 335565544 22 6777777777777777665 466777777
Q ss_pred cCCCCccc
Q 046172 188 IPDSNIEQ 195 (198)
Q Consensus 188 L~~S~i~~ 195 (198)
|+++++..
T Consensus 760 Ls~N~L~~ 767 (876)
T 4ecn_A 760 VSYNCFSS 767 (876)
T ss_dssp CCSSCCSS
T ss_pred eCCCCCCc
Confidence 77766654
No 117
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=97.15 E-value=0.0011 Score=57.44 Aligned_cols=59 Identities=19% Similarity=0.308 Sum_probs=34.4
Q ss_pred hcCCccccEEEEecccccCCCccccccCCCCc-cCCcceEEeCCCCCCCCCCCC-CCCCceEEEcCCCCccc
Q 046172 126 FTKMHKLRFLKFYNSISEGKSKCMVSNCQGPI-LAKVRYFHWDGYPLTSLPSNI-YPDKLVFLEIPDSNIEQ 195 (198)
Q Consensus 126 f~~m~~Lr~L~l~~~~~~~~~~~~~~lp~~l~-l~~Lr~L~~~~~~l~~LP~~~-~l~~L~~L~L~~S~i~~ 195 (198)
|.++++|+.|++.++. ...+| +. +++|++|++.++.+..+| + .+.+|++|++++++++.
T Consensus 81 ~~~l~~L~~L~Ls~N~-------l~~~~--~~~l~~L~~L~L~~N~l~~l~--~~~l~~L~~L~l~~N~l~~ 141 (457)
T 3bz5_A 81 LSQNTNLTYLACDSNK-------LTNLD--VTPLTKLTYLNCDTNKLTKLD--VSQNPLLTYLNCARNTLTE 141 (457)
T ss_dssp CTTCTTCSEEECCSSC-------CSCCC--CTTCTTCCEEECCSSCCSCCC--CTTCTTCCEEECTTSCCSC
T ss_pred cccCCCCCEEECcCCC-------Cceee--cCCCCcCCEEECCCCcCCeec--CCCCCcCCEEECCCCccce
Confidence 5555566666655442 22232 55 666666666666666665 4 46667777776666543
No 118
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=97.09 E-value=0.00083 Score=61.89 Aligned_cols=42 Identities=17% Similarity=0.296 Sum_probs=22.1
Q ss_pred cCCCCc-cCCcceEEeCCCCCC-CCCCCC-CCCCceEEEcCCCCc
Q 046172 152 NCQGPI-LAKVRYFHWDGYPLT-SLPSNI-YPDKLVFLEIPDSNI 193 (198)
Q Consensus 152 lp~~l~-l~~Lr~L~~~~~~l~-~LP~~~-~l~~L~~L~L~~S~i 193 (198)
+|..+. +++|++|++.++.+. .+|..| .+.+|++|+|+++++
T Consensus 482 ~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l 526 (768)
T 3rgz_A 482 IPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSF 526 (768)
T ss_dssp CCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCC
T ss_pred CCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcc
Confidence 444455 555555555555544 455554 355555555555544
No 119
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=97.06 E-value=0.00051 Score=59.35 Aligned_cols=31 Identities=10% Similarity=0.112 Sum_probs=14.7
Q ss_pred cCCcceEEeCCCCCCCCCCCCCCCCceEEEc
Q 046172 158 LAKVRYFHWDGYPLTSLPSNIYPDKLVFLEI 188 (198)
Q Consensus 158 l~~Lr~L~~~~~~l~~LP~~~~l~~L~~L~L 188 (198)
+++|++|++.++.+..+|.-..+.+|++|++
T Consensus 133 l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l 163 (466)
T 1o6v_A 133 LTNLNRLELSSNTISDISALSGLTSLQQLSF 163 (466)
T ss_dssp CTTCSEEEEEEEEECCCGGGTTCTTCSEEEE
T ss_pred CCCCCEEECCCCccCCChhhccCCcccEeec
Confidence 4555555555554444443223445555544
No 120
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=97.02 E-value=1.3e-05 Score=61.53 Aligned_cols=62 Identities=18% Similarity=0.109 Sum_probs=40.0
Q ss_pred hhhcCCccccEEEEecccccCCCccccccCCCCc-cCCcceEEeCCCCCCCCCC--CC-CCCCceEEEcCCCCc
Q 046172 124 DTFTKMHKLRFLKFYNSISEGKSKCMVSNCQGPI-LAKVRYFHWDGYPLTSLPS--NI-YPDKLVFLEIPDSNI 193 (198)
Q Consensus 124 ~~f~~m~~Lr~L~l~~~~~~~~~~~~~~lp~~l~-l~~Lr~L~~~~~~l~~LP~--~~-~l~~L~~L~L~~S~i 193 (198)
..+..+++|+.|++.++. ...+| ++. +++|++|++.++.+..+|. .+ .+.+|++|+++++.+
T Consensus 87 ~~~~~~~~L~~L~L~~N~-------l~~l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l 152 (198)
T 1ds9_A 87 NLDAVADTLEELWISYNQ-------IASLS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPL 152 (198)
T ss_dssp SHHHHHHHCSEEEEEEEE-------CCCHH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHH
T ss_pred chhhcCCcCCEEECcCCc-------CCcCC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCcc
Confidence 355666777777776652 23344 455 7777777777777776664 34 577777777777665
No 121
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=96.96 E-value=0.00096 Score=60.24 Aligned_cols=63 Identities=13% Similarity=0.191 Sum_probs=50.9
Q ss_pred hcCCccccEEEEecccccCCCccccccCCCCc-cCCcceEEeCCCCCCCCCCCCCCCCceEEEcCCCCcccC
Q 046172 126 FTKMHKLRFLKFYNSISEGKSKCMVSNCQGPI-LAKVRYFHWDGYPLTSLPSNIYPDKLVFLEIPDSNIEQL 196 (198)
Q Consensus 126 f~~m~~Lr~L~l~~~~~~~~~~~~~~lp~~l~-l~~Lr~L~~~~~~l~~LP~~~~l~~L~~L~L~~S~i~~L 196 (198)
|.+|++|+.|++.++. ...+| .+. +++|+.|++.++.+..+|.-..+.+|+.|+|++++|..+
T Consensus 83 l~~l~~L~~L~Ls~N~-------l~~l~-~l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~l 146 (605)
T 1m9s_A 83 LTNLKNLGWLFLDENK-------IKDLS-SLKDLKKLKSLSLEHNGISDINGLVHLPQLESLYLGNNKITDI 146 (605)
T ss_dssp GGGCTTCCEEECCSSC-------CCCCT-TSTTCTTCCEEECTTSCCCCCGGGGGCTTCSEEECCSSCCCCC
T ss_pred hccCCCCCEEECcCCC-------CCCCh-hhccCCCCCEEEecCCCCCCCccccCCCccCEEECCCCccCCc
Confidence 8899999999998763 33344 677 999999999999999887544799999999999887653
No 122
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=96.89 E-value=0.0019 Score=53.17 Aligned_cols=36 Identities=11% Similarity=0.175 Sum_probs=17.5
Q ss_pred cCCcceEEeCCCCCCCCCCCCCCCCceEEEcCCCCc
Q 046172 158 LAKVRYFHWDGYPLTSLPSNIYPDKLVFLEIPDSNI 193 (198)
Q Consensus 158 l~~Lr~L~~~~~~l~~LP~~~~l~~L~~L~L~~S~i 193 (198)
+++|+.|++.++.+..+|.-..+.+|++|+|+++.+
T Consensus 264 l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~L~~n~l 299 (347)
T 4fmz_A 264 LTKLKMLNVGSNQISDISVLNNLSQLNSLFLNNNQL 299 (347)
T ss_dssp CTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCC
T ss_pred CCCcCEEEccCCccCCChhhcCCCCCCEEECcCCcC
Confidence 445555555555555443222345555555555544
No 123
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=96.87 E-value=0.00091 Score=58.10 Aligned_cols=78 Identities=17% Similarity=0.216 Sum_probs=59.5
Q ss_pred cceEEEEeeCCcccccccChhhhcCCccccEEEEecccccCCCccccccCCCCc-cCCcceEEeCCCCCCCCCCCC-CCC
Q 046172 104 EKIEGICFDMSKVKQIGLNLDTFTKMHKLRFLKFYNSISEGKSKCMVSNCQGPI-LAKVRYFHWDGYPLTSLPSNI-YPD 181 (198)
Q Consensus 104 ~~v~~i~l~~~~~~~~~~~~~~f~~m~~Lr~L~l~~~~~~~~~~~~~~lp~~l~-l~~Lr~L~~~~~~l~~LP~~~-~l~ 181 (198)
.+++.+.+.-.... .+ ..|.++++|+.|++.++. ...+| +. +++|++|++.++.+..+| + .+.
T Consensus 42 ~~L~~L~Ls~n~l~--~~--~~l~~l~~L~~L~Ls~n~-------l~~~~--~~~l~~L~~L~Ls~N~l~~~~--~~~l~ 106 (457)
T 3bz5_A 42 ATLTSLDCHNSSIT--DM--TGIEKLTGLTKLICTSNN-------ITTLD--LSQNTNLTYLACDSNKLTNLD--VTPLT 106 (457)
T ss_dssp TTCCEEECCSSCCC--CC--TTGGGCTTCSEEECCSSC-------CSCCC--CTTCTTCSEEECCSSCCSCCC--CTTCT
T ss_pred CCCCEEEccCCCcc--cC--hhhcccCCCCEEEccCCc-------CCeEc--cccCCCCCEEECcCCCCceee--cCCCC
Confidence 44555555433322 22 268999999999998864 33444 77 999999999999999987 6 699
Q ss_pred CceEEEcCCCCcccC
Q 046172 182 KLVFLEIPDSNIEQL 196 (198)
Q Consensus 182 ~L~~L~L~~S~i~~L 196 (198)
+|++|+|+++++..+
T Consensus 107 ~L~~L~L~~N~l~~l 121 (457)
T 3bz5_A 107 KLTYLNCDTNKLTKL 121 (457)
T ss_dssp TCCEEECCSSCCSCC
T ss_pred cCCEEECCCCcCCee
Confidence 999999999988764
No 124
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=96.85 E-value=0.0026 Score=57.63 Aligned_cols=75 Identities=20% Similarity=0.187 Sum_probs=48.9
Q ss_pred cceEEEEeeCCcccccccChhhhcCCccccEEEEecccccCCCccccccCCCCccCCcceEEeCCCCCCCCCCCCCCCCc
Q 046172 104 EKIEGICFDMSKVKQIGLNLDTFTKMHKLRFLKFYNSISEGKSKCMVSNCQGPILAKVRYFHWDGYPLTSLPSNIYPDKL 183 (198)
Q Consensus 104 ~~v~~i~l~~~~~~~~~~~~~~f~~m~~Lr~L~l~~~~~~~~~~~~~~lp~~l~l~~Lr~L~~~~~~l~~LP~~~~l~~L 183 (198)
..++.+.+.-+... .++. .+++|++|+++++. ...+|. .+++|++|++.++.+..+|. .+.+|
T Consensus 61 ~~L~~L~L~~N~l~--~lp~----~l~~L~~L~Ls~N~-------l~~lp~--~l~~L~~L~Ls~N~l~~l~~--~l~~L 123 (622)
T 3g06_A 61 AHITTLVIPDNNLT--SLPA----LPPELRTLEVSGNQ-------LTSLPV--LPPGLLELSIFSNPLTHLPA--LPSGL 123 (622)
T ss_dssp TTCSEEEECSCCCS--CCCC----CCTTCCEEEECSCC-------CSCCCC--CCTTCCEEEECSCCCCCCCC--CCTTC
T ss_pred CCCcEEEecCCCCC--CCCC----cCCCCCEEEcCCCc-------CCcCCC--CCCCCCEEECcCCcCCCCCC--CCCCc
Confidence 34555555443332 2333 57888999988763 334555 46788888888888888887 56667
Q ss_pred eEEEcCCCCccc
Q 046172 184 VFLEIPDSNIEQ 195 (198)
Q Consensus 184 ~~L~L~~S~i~~ 195 (198)
..|+|++++|..
T Consensus 124 ~~L~L~~N~l~~ 135 (622)
T 3g06_A 124 CKLWIFGNQLTS 135 (622)
T ss_dssp CEEECCSSCCSC
T ss_pred CEEECCCCCCCc
Confidence 777777766654
No 125
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=96.83 E-value=0.0012 Score=55.04 Aligned_cols=35 Identities=11% Similarity=0.164 Sum_probs=23.8
Q ss_pred ceEEEEeeCCcccccccChhhhcCCccccEEEEeccc
Q 046172 105 KIEGICFDMSKVKQIGLNLDTFTKMHKLRFLKFYNSI 141 (198)
Q Consensus 105 ~v~~i~l~~~~~~~~~~~~~~f~~m~~Lr~L~l~~~~ 141 (198)
.++.+.+.-... -.+++.+|.++++|+.|++++..
T Consensus 31 ~l~~L~Ls~N~i--~~i~~~~f~~l~~L~~L~Ls~N~ 65 (350)
T 4ay9_X 31 NAIELRFVLTKL--RVIQKGAFSGFGDLEKIEISQND 65 (350)
T ss_dssp TCSEEEEESCCC--SEECTTSSTTCTTCCEEEEECCT
T ss_pred CCCEEEccCCcC--CCcCHHHHcCCCCCCEEECcCCC
Confidence 355555544433 35677889999999999998754
No 126
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=96.78 E-value=0.0022 Score=52.25 Aligned_cols=65 Identities=14% Similarity=0.041 Sum_probs=52.0
Q ss_pred hhhhcCC---ccccEEEEecccccCCCccccccCCCCccCCcceEEeCCCCCCCCCCCCCCCCceEEEcCCCCccc
Q 046172 123 LDTFTKM---HKLRFLKFYNSISEGKSKCMVSNCQGPILAKVRYFHWDGYPLTSLPSNIYPDKLVFLEIPDSNIEQ 195 (198)
Q Consensus 123 ~~~f~~m---~~Lr~L~l~~~~~~~~~~~~~~lp~~l~l~~Lr~L~~~~~~l~~LP~~~~l~~L~~L~L~~S~i~~ 195 (198)
+..+..+ ++|+.|++.++. ...+|..+ +++|+.|+++++.+..+|.-..+.+|++|+|+++.+..
T Consensus 241 p~~~~~~~~~~~L~~L~Ls~N~-------l~~lp~~~-~~~L~~L~Ls~N~l~~~~~~~~l~~L~~L~L~~N~l~~ 308 (310)
T 4glp_A 241 NPSAPRCMWSSALNSLNLSFAG-------LEQVPKGL-PAKLRVLDLSSNRLNRAPQPDELPEVDNLTLDGNPFLV 308 (310)
T ss_dssp CSCCSSCCCCTTCCCEECCSSC-------CCSCCSCC-CSCCSCEECCSCCCCSCCCTTSCCCCSCEECSSTTTSC
T ss_pred hhhHHhccCcCcCCEEECCCCC-------CCchhhhh-cCCCCEEECCCCcCCCCchhhhCCCccEEECcCCCCCC
Confidence 3445555 699999998763 44677766 48999999999999999874478999999999998863
No 127
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=96.71 E-value=0.0038 Score=55.99 Aligned_cols=56 Identities=16% Similarity=0.196 Sum_probs=28.6
Q ss_pred CCccccEEEEecccccCCCccccccCCCCccCCcceEEeCCCCCCCCCCCCCCCCceEEEcCCCCcc
Q 046172 128 KMHKLRFLKFYNSISEGKSKCMVSNCQGPILAKVRYFHWDGYPLTSLPSNIYPDKLVFLEIPDSNIE 194 (198)
Q Consensus 128 ~m~~Lr~L~l~~~~~~~~~~~~~~lp~~l~l~~Lr~L~~~~~~l~~LP~~~~l~~L~~L~L~~S~i~ 194 (198)
.+++|+.|++.++. ...+|. .+++|+.|+++++.+..+|. |. .+|+.|+|++++|.
T Consensus 138 ~l~~L~~L~Ls~N~-------l~~lp~--~l~~L~~L~Ls~N~L~~lp~-l~-~~L~~L~Ls~N~L~ 193 (571)
T 3cvr_A 138 LPALLEYINADNNQ-------LTMLPE--LPTSLEVLSVRNNQLTFLPE-LP-ESLEALDVSTNLLE 193 (571)
T ss_dssp CCTTCCEEECCSSC-------CSCCCC--CCTTCCEEECCSSCCSCCCC-CC-TTCCEEECCSSCCS
T ss_pred cCccccEEeCCCCc-------cCcCCC--cCCCcCEEECCCCCCCCcch-hh-CCCCEEECcCCCCC
Confidence 35556666665542 122333 24455555555555555555 44 55555555555554
No 128
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=96.70 E-value=0.0046 Score=55.96 Aligned_cols=57 Identities=21% Similarity=0.192 Sum_probs=38.1
Q ss_pred CCccccEEEEecccccCCCccccccCCCCccCCcceEEeCCCCCCCCCCCCCCCCceEEEcCCCCccc
Q 046172 128 KMHKLRFLKFYNSISEGKSKCMVSNCQGPILAKVRYFHWDGYPLTSLPSNIYPDKLVFLEIPDSNIEQ 195 (198)
Q Consensus 128 ~m~~Lr~L~l~~~~~~~~~~~~~~lp~~l~l~~Lr~L~~~~~~l~~LP~~~~l~~L~~L~L~~S~i~~ 195 (198)
.+.+|+.|++.++. ...+|. .+++|+.|++.++.+..+|.. +.+|++|+|+++++..
T Consensus 99 ~l~~L~~L~Ls~N~-------l~~l~~--~l~~L~~L~L~~N~l~~lp~~--l~~L~~L~Ls~N~l~~ 155 (622)
T 3g06_A 99 LPPGLLELSIFSNP-------LTHLPA--LPSGLCKLWIFGNQLTSLPVL--PPGLQELSVSDNQLAS 155 (622)
T ss_dssp CCTTCCEEEECSCC-------CCCCCC--CCTTCCEEECCSSCCSCCCCC--CTTCCEEECCSSCCSC
T ss_pred CCCCCCEEECcCCc-------CCCCCC--CCCCcCEEECCCCCCCcCCCC--CCCCCEEECcCCcCCC
Confidence 77899999998763 334444 356677777777777777654 3567777777666654
No 129
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=96.34 E-value=0.0099 Score=51.44 Aligned_cols=60 Identities=10% Similarity=0.091 Sum_probs=32.2
Q ss_pred hhcCCccccEEEEecccccCCCccccccCCCCccCCcceEEeCCCCCCCCCCCC-CCCCceEEEcCCCCcc
Q 046172 125 TFTKMHKLRFLKFYNSISEGKSKCMVSNCQGPILAKVRYFHWDGYPLTSLPSNI-YPDKLVFLEIPDSNIE 194 (198)
Q Consensus 125 ~f~~m~~Lr~L~l~~~~~~~~~~~~~~lp~~l~l~~Lr~L~~~~~~l~~LP~~~-~l~~L~~L~L~~S~i~ 194 (198)
.|.++++|+.|++.+... ..+|.. +.+|++|++.++.+..+|. | .+.+|++|+++++++.
T Consensus 148 ~~~~l~~L~~L~l~~N~l-------~~lp~~--~~~L~~L~L~~n~l~~l~~-~~~l~~L~~L~l~~N~l~ 208 (454)
T 1jl5_A 148 ELQNSSFLKIIDVDNNSL-------KKLPDL--PPSLEFIAAGNNQLEELPE-LQNLPFLTAIYADNNSLK 208 (454)
T ss_dssp CCTTCTTCCEEECCSSCC-------SCCCCC--CTTCCEEECCSSCCSSCCC-CTTCTTCCEEECCSSCCS
T ss_pred ccCCCCCCCEEECCCCcC-------cccCCC--cccccEEECcCCcCCcCcc-ccCCCCCCEEECCCCcCC
Confidence 488888888888877532 122221 2345555555555555542 3 3555555555544443
No 130
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=96.28 E-value=0.0093 Score=53.46 Aligned_cols=54 Identities=24% Similarity=0.361 Sum_probs=41.3
Q ss_pred cccEEEEecccccCCCccccccCCCCccCCcceEEeCCCCCCCCCCCCCCCCceEEEcCCCCccc
Q 046172 131 KLRFLKFYNSISEGKSKCMVSNCQGPILAKVRYFHWDGYPLTSLPSNIYPDKLVFLEIPDSNIEQ 195 (198)
Q Consensus 131 ~Lr~L~l~~~~~~~~~~~~~~lp~~l~l~~Lr~L~~~~~~l~~LP~~~~l~~L~~L~L~~S~i~~ 195 (198)
+|+.|++.++. ...+|. .+++|++|+++++.+..+|. .+.+|++|+|++++|..
T Consensus 121 ~L~~L~Ls~N~-------l~~lp~--~l~~L~~L~Ls~N~l~~lp~--~l~~L~~L~Ls~N~L~~ 174 (571)
T 3cvr_A 121 SLKHLDVDNNQ-------LTMLPE--LPALLEYINADNNQLTMLPE--LPTSLEVLSVRNNQLTF 174 (571)
T ss_dssp TCCEEECCSSC-------CSCCCC--CCTTCCEEECCSSCCSCCCC--CCTTCCEEECCSSCCSC
T ss_pred CCCEEECCCCc-------CCCCCC--cCccccEEeCCCCccCcCCC--cCCCcCEEECCCCCCCC
Confidence 77888877653 334565 57788888888888888887 67888899998888764
No 131
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=96.22 E-value=0.0011 Score=55.80 Aligned_cols=68 Identities=12% Similarity=0.070 Sum_probs=38.5
Q ss_pred hhcCCccccEEEEecccccCCCccccccCCCCc-cCCcceEEeCCCCCCC-----CCCCC---CCCCceEEEcCCCCcc
Q 046172 125 TFTKMHKLRFLKFYNSISEGKSKCMVSNCQGPI-LAKVRYFHWDGYPLTS-----LPSNI---YPDKLVFLEIPDSNIE 194 (198)
Q Consensus 125 ~f~~m~~Lr~L~l~~~~~~~~~~~~~~lp~~l~-l~~Lr~L~~~~~~l~~-----LP~~~---~l~~L~~L~L~~S~i~ 194 (198)
+|.++++|+.|++.++..... ....+|..+. +++|+.|++.++.+.. +|..+ .+.+|++|+|+++.+.
T Consensus 211 ~l~~~~~L~~L~Ls~n~l~~~--g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~ 287 (386)
T 2ca6_A 211 GLAYCQELKVLDLQDNTFTHL--GSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIE 287 (386)
T ss_dssp TGGGCTTCCEEECCSSCCHHH--HHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCB
T ss_pred HhhcCCCccEEECcCCCCCcH--HHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCC
Confidence 556666666666655421000 0134555666 6677777777776654 34443 2567777777777664
No 132
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=96.01 E-value=0.019 Score=49.70 Aligned_cols=67 Identities=16% Similarity=0.109 Sum_probs=33.6
Q ss_pred hhcCCccccEEEEecccccC-------------CCccccccCCCCc-cCCcceEEeCCCCCCCCCCCCCCCCceEEEcCC
Q 046172 125 TFTKMHKLRFLKFYNSISEG-------------KSKCMVSNCQGPI-LAKVRYFHWDGYPLTSLPSNIYPDKLVFLEIPD 190 (198)
Q Consensus 125 ~f~~m~~Lr~L~l~~~~~~~-------------~~~~~~~lp~~l~-l~~Lr~L~~~~~~l~~LP~~~~l~~L~~L~L~~ 190 (198)
.|.++++|+.|++.++.... .......+| ++. +++|++|+++++.+..+|.. +.+|+.|++++
T Consensus 190 ~~~~l~~L~~L~l~~N~l~~l~~~~~~L~~L~l~~n~l~~lp-~~~~l~~L~~L~l~~N~l~~l~~~--~~~L~~L~l~~ 266 (454)
T 1jl5_A 190 ELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELP-ELQNLPFLTTIYADNNLLKTLPDL--PPSLEALNVRD 266 (454)
T ss_dssp CCTTCTTCCEEECCSSCCSSCCCCCTTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSCCSSCCSC--CTTCCEEECCS
T ss_pred cccCCCCCCEEECCCCcCCcCCCCcCcccEEECcCCcCCccc-ccCCCCCCCEEECCCCcCCccccc--ccccCEEECCC
Confidence 47777888888777653210 000112334 244 55555555555555555542 24555555555
Q ss_pred CCcc
Q 046172 191 SNIE 194 (198)
Q Consensus 191 S~i~ 194 (198)
+++.
T Consensus 267 N~l~ 270 (454)
T 1jl5_A 267 NYLT 270 (454)
T ss_dssp SCCS
T ss_pred Cccc
Confidence 4443
No 133
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=96.00 E-value=0.0063 Score=50.54 Aligned_cols=68 Identities=13% Similarity=0.206 Sum_probs=32.8
Q ss_pred cChhhhcCCc-cccEEEEecccccCCCccccccCCCCc-cCCcceEEeCC-CCCCCCCCC-C-CCCCceEEEcCCCCccc
Q 046172 121 LNLDTFTKMH-KLRFLKFYNSISEGKSKCMVSNCQGPI-LAKVRYFHWDG-YPLTSLPSN-I-YPDKLVFLEIPDSNIEQ 195 (198)
Q Consensus 121 ~~~~~f~~m~-~Lr~L~l~~~~~~~~~~~~~~lp~~l~-l~~Lr~L~~~~-~~l~~LP~~-~-~l~~L~~L~L~~S~i~~ 195 (198)
++..+|..+. .|++|++.+.. ...+|.+.. ..+|+.|.+.+ ..+..+|.. | .+.+|++|+|++++|+.
T Consensus 144 l~~~~f~~~~~~l~~L~L~~N~-------i~~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~ 216 (350)
T 4ay9_X 144 IERNSFVGLSFESVILWLNKNG-------IQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHS 216 (350)
T ss_dssp ECTTSSTTSBSSCEEEECCSSC-------CCEECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCC
T ss_pred ccccchhhcchhhhhhcccccc-------ccCCChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCc
Confidence 3444555554 45666665432 234444444 44455555543 235555543 3 35555555555555543
No 134
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=95.79 E-value=0.018 Score=47.20 Aligned_cols=69 Identities=14% Similarity=0.105 Sum_probs=52.3
Q ss_pred cccChhhhcCCccccEEEEecccccCCCccccccCCC-Cc-cCCcc-eEEeCCCCCCCCCC-CC-CCCCceEEEcCCCCc
Q 046172 119 IGLNLDTFTKMHKLRFLKFYNSISEGKSKCMVSNCQG-PI-LAKVR-YFHWDGYPLTSLPS-NI-YPDKLVFLEIPDSNI 193 (198)
Q Consensus 119 ~~~~~~~f~~m~~Lr~L~l~~~~~~~~~~~~~~lp~~-l~-l~~Lr-~L~~~~~~l~~LP~-~~-~l~~L~~L~L~~S~i 193 (198)
..++..+|.++.+|+.|++.+. ...++.+ +. +.+|+ .+.+.. .+..++. .| ++.+|+.|+|+.+++
T Consensus 239 ~~I~~~aF~~~~~L~~l~l~~n--------i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i 309 (329)
T 3sb4_A 239 TTIPDFTFAQKKYLLKIKLPHN--------LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKI 309 (329)
T ss_dssp CEECTTTTTTCTTCCEEECCTT--------CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCC
T ss_pred ceecHhhhhCCCCCCEEECCcc--------cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCcc
Confidence 4577889999999999988763 3456654 44 88898 888877 7888874 46 588999999887777
Q ss_pred ccC
Q 046172 194 EQL 196 (198)
Q Consensus 194 ~~L 196 (198)
+.+
T Consensus 310 ~~I 312 (329)
T 3sb4_A 310 TTL 312 (329)
T ss_dssp CEE
T ss_pred Ccc
Confidence 643
No 135
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=95.62 E-value=0.0026 Score=53.34 Aligned_cols=36 Identities=17% Similarity=0.187 Sum_probs=19.0
Q ss_pred cCCcceEEeCCCCCCC-----CCCCC-C-CCCceEEEcCCCCc
Q 046172 158 LAKVRYFHWDGYPLTS-----LPSNI-Y-PDKLVFLEIPDSNI 193 (198)
Q Consensus 158 l~~Lr~L~~~~~~l~~-----LP~~~-~-l~~L~~L~L~~S~i 193 (198)
+++|+.|++.++++.. +|..+ . +.+|+.|+|+++.+
T Consensus 273 ~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l 315 (386)
T 2ca6_A 273 NIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRF 315 (386)
T ss_dssp SCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBS
T ss_pred CCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcC
Confidence 4555555555555554 55444 2 45555555555544
No 136
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=95.56 E-value=0.0014 Score=53.68 Aligned_cols=64 Identities=9% Similarity=0.023 Sum_probs=34.2
Q ss_pred hhhcCCccccEEEEecccccCCCccccccCCCCc-cCCcceEEeCCC-CCCC--CCCCC-CCC-CceEEEcCCC
Q 046172 124 DTFTKMHKLRFLKFYNSISEGKSKCMVSNCQGPI-LAKVRYFHWDGY-PLTS--LPSNI-YPD-KLVFLEIPDS 191 (198)
Q Consensus 124 ~~f~~m~~Lr~L~l~~~~~~~~~~~~~~lp~~l~-l~~Lr~L~~~~~-~l~~--LP~~~-~l~-~L~~L~L~~S 191 (198)
.+|.++++|+.|++.++.. -....+|..+. +++|+.|++.+| .+.. +|..+ .+. +|++|+|+++
T Consensus 136 ~~l~~~~~L~~L~L~~~~~----l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~ 205 (336)
T 2ast_B 136 NTLAKNSNLVRLNLSGCSG----FSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGY 205 (336)
T ss_dssp HHHTTCTTCSEEECTTCBS----CCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSC
T ss_pred HHHhcCCCCCEEECCCCCC----CCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCC
Confidence 3455566666666655410 00012344445 666777777666 5543 45444 355 6777777666
No 137
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=94.95 E-value=0.011 Score=49.10 Aligned_cols=58 Identities=9% Similarity=0.135 Sum_probs=37.0
Q ss_pred ccccEEEEecccccCCCcccccc-CCC----Cc-c-CCcceEEeCCCCCCCCCCC-----C-C-CCCceEEEcCCCCcc
Q 046172 130 HKLRFLKFYNSISEGKSKCMVSN-CQG----PI-L-AKVRYFHWDGYPLTSLPSN-----I-Y-PDKLVFLEIPDSNIE 194 (198)
Q Consensus 130 ~~Lr~L~l~~~~~~~~~~~~~~l-p~~----l~-l-~~Lr~L~~~~~~l~~LP~~-----~-~-l~~L~~L~L~~S~i~ 194 (198)
++|+.|++.++.. ... +.. +. . ++|+.|++.++.+...+.. + . +.+|++|+|+++.+.
T Consensus 80 ~~L~~L~Ls~n~l-------~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~ 151 (362)
T 3goz_A 80 ANVTSLNLSGNFL-------SYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLG 151 (362)
T ss_dssp TTCCEEECCSSCG-------GGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGG
T ss_pred CCccEEECcCCcC-------ChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCC
Confidence 7777777766531 111 111 22 2 7888888888887766642 2 2 468888888888776
No 138
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=94.72 E-value=0.017 Score=46.93 Aligned_cols=65 Identities=14% Similarity=-0.013 Sum_probs=45.9
Q ss_pred hcCCccccEEEEecccccCCCccccccCCCCc-cCCcceEEeCCCCCCCCCCCCCCC--CceEEEcCCCCcc
Q 046172 126 FTKMHKLRFLKFYNSISEGKSKCMVSNCQGPI-LAKVRYFHWDGYPLTSLPSNIYPD--KLVFLEIPDSNIE 194 (198)
Q Consensus 126 f~~m~~Lr~L~l~~~~~~~~~~~~~~lp~~l~-l~~Lr~L~~~~~~l~~LP~~~~l~--~L~~L~L~~S~i~ 194 (198)
..++.+|+.|++++.... ....+|..+. +++|+.|+++++.+++++.--.++ +|++|+|.++.+.
T Consensus 166 ~~~l~~L~~L~Ls~N~l~----~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l~L~~L~L~~Npl~ 233 (267)
T 3rw6_A 166 EENIPELLSLNLSNNRLY----RLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLC 233 (267)
T ss_dssp HHHCTTCCEEECTTSCCC----CCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTSCCSEEECTTSTTG
T ss_pred HhhCCCCCEEECCCCCCC----CCccchhHHhhCCCCCEEECCCCccCCchhhhhcccCCcceEEccCCcCc
Confidence 356788999999875321 1124555666 899999999998888774322344 8999999988775
No 139
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=93.82 E-value=0.012 Score=47.92 Aligned_cols=64 Identities=13% Similarity=0.183 Sum_probs=49.2
Q ss_pred hcCCccccEEEEecccccCCCccccccCCCCc-cCCcceEEeCCCCCC-CCCCCC-CCCCceEEEcCCC-Ccc
Q 046172 126 FTKMHKLRFLKFYNSISEGKSKCMVSNCQGPI-LAKVRYFHWDGYPLT-SLPSNI-YPDKLVFLEIPDS-NIE 194 (198)
Q Consensus 126 f~~m~~Lr~L~l~~~~~~~~~~~~~~lp~~l~-l~~Lr~L~~~~~~l~-~LP~~~-~l~~L~~L~L~~S-~i~ 194 (198)
+.++.+|+.|++.++.. ....+|..+. +++|+.|++.++.+. ..|..+ .+.+|++|+|+++ .+.
T Consensus 89 ~~~~~~L~~L~L~~~~l-----~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~ 156 (336)
T 2ast_B 89 HFSPFRVQHMDLSNSVI-----EVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFS 156 (336)
T ss_dssp CCCCBCCCEEECTTCEE-----CHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCC
T ss_pred hccCCCCCEEEccCCCc-----CHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCC
Confidence 45789999999987631 1122666777 999999999999876 466666 5899999999998 554
No 140
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=93.74 E-value=0.12 Score=36.85 Aligned_cols=42 Identities=17% Similarity=0.059 Sum_probs=29.6
Q ss_pred ccCCCCccCCcceEEeCCCCCCCCCCCC--CCCCceEEEcCCCCc
Q 046172 151 SNCQGPILAKVRYFHWDGYPLTSLPSNI--YPDKLVFLEIPDSNI 193 (198)
Q Consensus 151 ~lp~~l~l~~Lr~L~~~~~~l~~LP~~~--~l~~L~~L~L~~S~i 193 (198)
.+|.++ +.+|+.|+++++.+.+||..+ .+.+|+.|+|.++.+
T Consensus 24 ~vP~~l-p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 24 SLPTAF-PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp TSCSCC-CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred cCCCCC-CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence 455432 556788888888888888764 477888888877644
No 141
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=93.63 E-value=0.043 Score=41.73 Aligned_cols=87 Identities=14% Similarity=0.073 Sum_probs=49.4
Q ss_pred ccceEEEEeeCCcccccccChhhhcCCccccEEEEecccccCCCccccccCCCCc-cCCcceEEeCCCC-CCC--CCCCC
Q 046172 103 TEKIEGICFDMSKVKQIGLNLDTFTKMHKLRFLKFYNSISEGKSKCMVSNCQGPI-LAKVRYFHWDGYP-LTS--LPSNI 178 (198)
Q Consensus 103 ~~~v~~i~l~~~~~~~~~~~~~~f~~m~~Lr~L~l~~~~~~~~~~~~~~lp~~l~-l~~Lr~L~~~~~~-l~~--LP~~~ 178 (198)
...++.+.+.-+..... .-..++++++|+.|++.+|....+. ....+.+.-. .++|+.|++++|+ +.. +-.-.
T Consensus 60 ~~~L~~LDLs~~~Itd~--GL~~L~~~~~L~~L~L~~C~~ItD~-gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~ 136 (176)
T 3e4g_A 60 KYKIQAIDATDSCIMSI--GFDHMEGLQYVEKIRLCKCHYIEDG-CLERLSQLENLQKSMLEMEIISCGNVTDKGIIALH 136 (176)
T ss_dssp CCCEEEEEEESCCCCGG--GGGGGTTCSCCCEEEEESCTTCCHH-HHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGG
T ss_pred CceEeEEeCcCCCccHH--HHHHhcCCCCCCEEEeCCCCccCHH-HHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHh
Confidence 44566665543322111 1245678999999999987421110 0111111101 2369999999997 432 21112
Q ss_pred CCCCceEEEcCCCC
Q 046172 179 YPDKLVFLEIPDSN 192 (198)
Q Consensus 179 ~l~~L~~L~L~~S~ 192 (198)
.+++|+.|+|+++.
T Consensus 137 ~~~~L~~L~L~~c~ 150 (176)
T 3e4g_A 137 HFRNLKYLFLSDLP 150 (176)
T ss_dssp GCTTCCEEEEESCT
T ss_pred cCCCCCEEECCCCC
Confidence 57899999999863
No 142
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=93.18 E-value=0.011 Score=50.22 Aligned_cols=43 Identities=12% Similarity=0.060 Sum_probs=20.7
Q ss_pred cCCCCc-cCCcceEEeCCCCCCCC-----CCC-C-CCCCceEEEcCCCCcc
Q 046172 152 NCQGPI-LAKVRYFHWDGYPLTSL-----PSN-I-YPDKLVFLEIPDSNIE 194 (198)
Q Consensus 152 lp~~l~-l~~Lr~L~~~~~~l~~L-----P~~-~-~l~~L~~L~L~~S~i~ 194 (198)
+|..+. +++|+.|++.++++... ... + ...+|++|+|+++++.
T Consensus 105 l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~ 155 (461)
T 1z7x_W 105 LSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLS 155 (461)
T ss_dssp HHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCB
T ss_pred HHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCC
Confidence 344555 55666666655554321 111 1 1335666666665554
No 143
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=92.78 E-value=0.023 Score=47.28 Aligned_cols=66 Identities=14% Similarity=0.180 Sum_probs=49.0
Q ss_pred hhhcCCc-cccEEEEecccccCCCccccccCCCCc-c-----CCcceEEeCCCCCCCCCCC-----C-CC-CCceEEEcC
Q 046172 124 DTFTKMH-KLRFLKFYNSISEGKSKCMVSNCQGPI-L-----AKVRYFHWDGYPLTSLPSN-----I-YP-DKLVFLEIP 189 (198)
Q Consensus 124 ~~f~~m~-~Lr~L~l~~~~~~~~~~~~~~lp~~l~-l-----~~Lr~L~~~~~~l~~LP~~-----~-~l-~~L~~L~L~ 189 (198)
.+|.+++ +|+.|++.++... ..-+..+. . ++|+.|++.++.+...+.. + .. .+|++|+|+
T Consensus 44 ~~l~~~~~~L~~L~Ls~N~l~------~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls 117 (362)
T 3goz_A 44 QAFANTPASVTSLNLSGNSLG------FKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLG 117 (362)
T ss_dssp HHHHTCCTTCCEEECCSSCGG------GSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECC
T ss_pred HHHHhCCCceeEEECcCCCCC------HHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECc
Confidence 7899999 9999999886421 11122333 3 8999999999998866643 3 33 899999999
Q ss_pred CCCccc
Q 046172 190 DSNIEQ 195 (198)
Q Consensus 190 ~S~i~~ 195 (198)
++++..
T Consensus 118 ~N~l~~ 123 (362)
T 3goz_A 118 WNDFSS 123 (362)
T ss_dssp SSCGGG
T ss_pred CCcCCc
Confidence 999864
No 144
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=92.54 E-value=0.0088 Score=50.92 Aligned_cols=69 Identities=17% Similarity=0.180 Sum_probs=44.5
Q ss_pred hhhcCCccccEEEEecccccCCCccccccCCCCc--cCCcceEEeCCCCCC-----CCCCCC-CCCCceEEEcCCCCcc
Q 046172 124 DTFTKMHKLRFLKFYNSISEGKSKCMVSNCQGPI--LAKVRYFHWDGYPLT-----SLPSNI-YPDKLVFLEIPDSNIE 194 (198)
Q Consensus 124 ~~f~~m~~Lr~L~l~~~~~~~~~~~~~~lp~~l~--l~~Lr~L~~~~~~l~-----~LP~~~-~l~~L~~L~L~~S~i~ 194 (198)
.++.++++|+.|++.++..... ....+.+.+. .++|+.|++++|.+. .+|..+ ..++|++|+|+++++.
T Consensus 335 ~~l~~~~~L~~L~Ls~n~i~~~--~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~ 411 (461)
T 1z7x_W 335 SVLAQNRFLLELQISNNRLEDA--GVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLG 411 (461)
T ss_dssp HHHHHCSSCCEEECCSSBCHHH--HHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCC
T ss_pred HHHhhCCCccEEEccCCccccc--cHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCC
Confidence 4556667777777766432100 0011222222 458899999998887 678777 5888999999988774
No 145
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=90.23 E-value=0.024 Score=47.82 Aligned_cols=69 Identities=6% Similarity=-0.050 Sum_probs=37.6
Q ss_pred hhhcCCccccEEEEecccccCCCccccccCCCCc-cCCcceEEeCCCCCCC-----CCCCC-CCCCceEEEcCCCCcc
Q 046172 124 DTFTKMHKLRFLKFYNSISEGKSKCMVSNCQGPI-LAKVRYFHWDGYPLTS-----LPSNI-YPDKLVFLEIPDSNIE 194 (198)
Q Consensus 124 ~~f~~m~~Lr~L~l~~~~~~~~~~~~~~lp~~l~-l~~Lr~L~~~~~~l~~-----LP~~~-~l~~L~~L~L~~S~i~ 194 (198)
.++..+++|+.|++.++..... ....++..+. +++|+.|++.+|.+.. ++..+ ...+|++|+|+++.|.
T Consensus 177 ~~L~~~~~L~~L~Ls~N~l~~~--g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~ 252 (372)
T 3un9_A 177 EGLAGNTSVTHLSLLHTGLGDE--GLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELS 252 (372)
T ss_dssp HHHHTCSSCCEEECTTSSCHHH--HHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCC
T ss_pred HHHhcCCCcCEEeCCCCCCCcH--HHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCC
Confidence 3445566666666655422100 0123344555 6677777777776653 33333 3456777777777664
No 146
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=89.14 E-value=0.6 Score=40.75 Aligned_cols=40 Identities=8% Similarity=0.063 Sum_probs=27.0
Q ss_pred CCCc-cCCcceEEeCCCCCCCCCCCC-CCCCceEEEcCCCCc
Q 046172 154 QGPI-LAKVRYFHWDGYPLTSLPSNI-YPDKLVFLEIPDSNI 193 (198)
Q Consensus 154 ~~l~-l~~Lr~L~~~~~~l~~LP~~~-~l~~L~~L~L~~S~i 193 (198)
..+. +++|+.|.+.+.....+|..+ .+.+|++|+|+++.+
T Consensus 264 ~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l 305 (592)
T 3ogk_B 264 MNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALL 305 (592)
T ss_dssp SCCCCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCC
T ss_pred HHhhccccccccCccccchhHHHHHHhhcCCCcEEecCCCcC
Confidence 3445 667777777666566677666 477788888877664
No 147
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=87.95 E-value=0.74 Score=37.38 Aligned_cols=61 Identities=15% Similarity=0.128 Sum_probs=49.6
Q ss_pred cccChhhhcCCcccc-EEEEecccccCCCccccccCC-CCc-cCCcceEEeCCCCCCCCCCC-C-CCCCceEEE
Q 046172 119 IGLNLDTFTKMHKLR-FLKFYNSISEGKSKCMVSNCQ-GPI-LAKVRYFHWDGYPLTSLPSN-I-YPDKLVFLE 187 (198)
Q Consensus 119 ~~~~~~~f~~m~~Lr-~L~l~~~~~~~~~~~~~~lp~-~l~-l~~Lr~L~~~~~~l~~LP~~-~-~l~~L~~L~ 187 (198)
..+...+|.++.+|+ .|.+.+. ...++. .+. +++|+.|.+.+..+..+|.. | +..+|..|.
T Consensus 262 ~~I~~~aF~~~~~L~~~l~l~~~--------l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 262 KTIGQRVFSNCGRLAGTLELPAS--------VTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIY 327 (329)
T ss_dssp CEECTTTTTTCTTCCEEEEECTT--------CCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEE
T ss_pred ceehHHHhhCChhccEEEEEccc--------ceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhc
Confidence 357889999999999 9999763 345654 556 99999999999999999975 6 588888774
No 148
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=86.12 E-value=0.083 Score=46.30 Aligned_cols=37 Identities=8% Similarity=0.166 Sum_probs=21.1
Q ss_pred cCCcceEEeCCCCCCC--CCCCC-CCCCceEEEcCCCCcc
Q 046172 158 LAKVRYFHWDGYPLTS--LPSNI-YPDKLVFLEIPDSNIE 194 (198)
Q Consensus 158 l~~Lr~L~~~~~~l~~--LP~~~-~l~~L~~L~L~~S~i~ 194 (198)
+++|+.|++.+|++.. +|..+ .+.+|++|+|+++++.
T Consensus 487 ~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it 526 (592)
T 3ogk_B 487 CPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRAS 526 (592)
T ss_dssp CTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCC
T ss_pred CcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCC
Confidence 5666666666666431 33333 3566666776666654
No 149
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=84.77 E-value=0.079 Score=44.61 Aligned_cols=65 Identities=12% Similarity=0.066 Sum_probs=44.5
Q ss_pred CCccccEEEEecccccCCCccccccCCCCc-cCCcceEEeCCCCCCC-----CCCCC-CCCCceEEEcCCCCcc
Q 046172 128 KMHKLRFLKFYNSISEGKSKCMVSNCQGPI-LAKVRYFHWDGYPLTS-----LPSNI-YPDKLVFLEIPDSNIE 194 (198)
Q Consensus 128 ~m~~Lr~L~l~~~~~~~~~~~~~~lp~~l~-l~~Lr~L~~~~~~l~~-----LP~~~-~l~~L~~L~L~~S~i~ 194 (198)
..++|+.|++.++..... ....++..+. .++|+.|++.++.+.. |+..+ .+.+|++|+|+++.|.
T Consensus 153 ~~~~L~~L~Ls~n~l~~~--~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~ 224 (372)
T 3un9_A 153 DQCQITTLRLSNNPLTAA--GVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAG 224 (372)
T ss_dssp TTCCCCEEECCSSCCHHH--HHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCC
T ss_pred cCCccceeeCCCCCCChH--HHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCC
Confidence 467788888887632100 1123555566 7889999999988753 34444 4678999999998875
No 150
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=84.69 E-value=0.11 Score=39.08 Aligned_cols=69 Identities=9% Similarity=0.091 Sum_probs=38.9
Q ss_pred hhhhcCCccccEEEEecccccCCCccccccCCCCc-cCCcceEEe--CCCCCCC-----CCCCC-CCCCceEEEcCCCCc
Q 046172 123 LDTFTKMHKLRFLKFYNSISEGKSKCMVSNCQGPI-LAKVRYFHW--DGYPLTS-----LPSNI-YPDKLVFLEIPDSNI 193 (198)
Q Consensus 123 ~~~f~~m~~Lr~L~l~~~~~~~~~~~~~~lp~~l~-l~~Lr~L~~--~~~~l~~-----LP~~~-~l~~L~~L~L~~S~i 193 (198)
.+++...++|+.|++.++.+... ....+.+.+. .+.|+.|++ .++.+.. |...+ .-+.|++|+|+++.+
T Consensus 86 ~~~L~~n~~L~~L~L~~N~i~~~--g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i 163 (185)
T 1io0_A 86 AEMLKVNNTLKSLNVESNFISGS--GILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQ 163 (185)
T ss_dssp HHHHHHCSSCCEEECCSSCCCHH--HHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred HHHHHhCCCcCEEECcCCcCCHH--HHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCC
Confidence 34555556777777766532111 1123455555 667777777 6666643 33333 246677777777765
No 151
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=84.68 E-value=0.48 Score=38.19 Aligned_cols=39 Identities=13% Similarity=0.205 Sum_probs=33.2
Q ss_pred cCCcceEEeCCCCCCCCC---CCC-CCCCceEEEcCCCCcccC
Q 046172 158 LAKVRYFHWDGYPLTSLP---SNI-YPDKLVFLEIPDSNIEQL 196 (198)
Q Consensus 158 l~~Lr~L~~~~~~l~~LP---~~~-~l~~L~~L~L~~S~i~~L 196 (198)
+++|+.|+++++.+..++ ..+ .+.+|+.|+|++++|..+
T Consensus 169 l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~ 211 (267)
T 3rw6_A 169 IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE 211 (267)
T ss_dssp CTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG
T ss_pred CCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc
Confidence 789999999999988765 444 599999999999998754
No 152
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=83.68 E-value=0.094 Score=39.48 Aligned_cols=90 Identities=7% Similarity=0.091 Sum_probs=57.9
Q ss_pred ccceEEEEeeCC-ccc--ccccChhhhcCCccccEEEEecccccCCCccccccCCCCc-cCCcceEEeCCCCCCC-----
Q 046172 103 TEKIEGICFDMS-KVK--QIGLNLDTFTKMHKLRFLKFYNSISEGKSKCMVSNCQGPI-LAKVRYFHWDGYPLTS----- 173 (198)
Q Consensus 103 ~~~v~~i~l~~~-~~~--~~~~~~~~f~~m~~Lr~L~l~~~~~~~~~~~~~~lp~~l~-l~~Lr~L~~~~~~l~~----- 173 (198)
...++.+.+.-. ... ....-..++...++|+.|++.++..... ....+.+.+. .++|+.|++.++.+..
T Consensus 35 ~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~--g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~ 112 (185)
T 1io0_A 35 DPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDP--VAFALAEMLKVNNTLKSLNVESNFISGSGILA 112 (185)
T ss_dssp CTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHH--HHHHHHHHHHHCSSCCEEECCSSCCCHHHHHH
T ss_pred CCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChH--HHHHHHHHHHhCCCcCEEECcCCcCCHHHHHH
Confidence 345666666443 321 1222356777888999999987643111 1123444555 6789999999998864
Q ss_pred CCCCC-CCCCceEEEc--CCCCcc
Q 046172 174 LPSNI-YPDKLVFLEI--PDSNIE 194 (198)
Q Consensus 174 LP~~~-~l~~L~~L~L--~~S~i~ 194 (198)
|...+ ..+.|++|+| +++.|.
T Consensus 113 l~~~L~~n~~L~~L~L~~~~N~i~ 136 (185)
T 1io0_A 113 LVEALQSNTSLIELRIDNQSQPLG 136 (185)
T ss_dssp HHHGGGGCSSCCEEECCCCSSCCC
T ss_pred HHHHHHhCCCceEEEecCCCCCCC
Confidence 45555 4678999999 777764
No 153
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=82.58 E-value=0.4 Score=41.81 Aligned_cols=12 Identities=17% Similarity=0.124 Sum_probs=6.7
Q ss_pred CCCceEEEcCCC
Q 046172 180 PDKLVFLEIPDS 191 (198)
Q Consensus 180 l~~L~~L~L~~S 191 (198)
+.+|+.|+|+++
T Consensus 210 ~~~L~~L~L~~~ 221 (594)
T 2p1m_B 210 CPNLKSLKLNRA 221 (594)
T ss_dssp CTTCCEEECCTT
T ss_pred CCCCcEEecCCC
Confidence 355666666554
No 154
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=81.53 E-value=1.2 Score=31.58 Aligned_cols=22 Identities=14% Similarity=0.076 Sum_probs=11.6
Q ss_pred ccChhhhcCCccccEEEEeccc
Q 046172 120 GLNLDTFTKMHKLRFLKFYNSI 141 (198)
Q Consensus 120 ~~~~~~f~~m~~Lr~L~l~~~~ 141 (198)
.++..+|..+.+|+.|++.+..
T Consensus 45 ~l~~~~f~~l~~L~~L~L~~NP 66 (130)
T 3rfe_A 45 ALPPGLLDALPALRTAHLGANP 66 (130)
T ss_dssp SCCTTTGGGCTTCCEEECCSSC
T ss_pred ccChhhhhhccccCEEEecCCC
Confidence 3445555555555555555443
No 155
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=81.38 E-value=2.2 Score=36.03 Aligned_cols=21 Identities=19% Similarity=0.206 Sum_probs=15.7
Q ss_pred ccChhhhcCCccccEEEEecc
Q 046172 120 GLNLDTFTKMHKLRFLKFYNS 140 (198)
Q Consensus 120 ~~~~~~f~~m~~Lr~L~l~~~ 140 (198)
.+...+|.++.+|+.+.+.+.
T Consensus 261 ~I~~~aF~~c~~L~~l~l~~~ 281 (401)
T 4fdw_A 261 NIASRAFYYCPELAEVTTYGS 281 (401)
T ss_dssp EECTTTTTTCTTCCEEEEESS
T ss_pred EEChhHhhCCCCCCEEEeCCc
Confidence 456778888888888887654
No 156
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=79.13 E-value=0.93 Score=37.96 Aligned_cols=34 Identities=18% Similarity=0.098 Sum_probs=16.8
Q ss_pred cCCcceEEeCCCCCCCCCCCCCCCCceEEEcCCCC
Q 046172 158 LAKVRYFHWDGYPLTSLPSNIYPDKLVFLEIPDSN 192 (198)
Q Consensus 158 l~~Lr~L~~~~~~l~~LP~~~~l~~L~~L~L~~S~ 192 (198)
+++|+-|.+.++.-.++|. +...+|+.|+|..+.
T Consensus 171 ~P~L~~L~L~g~~~l~l~~-~~~~~L~~L~L~~~~ 204 (362)
T 2ra8_A 171 MPLLNNLKIKGTNNLSIGK-KPRPNLKSLEIISGG 204 (362)
T ss_dssp CTTCCEEEEECCBTCBCCS-CBCTTCSEEEEECSB
T ss_pred CCCCcEEEEeCCCCceecc-ccCCCCcEEEEecCC
Confidence 4566666665542123443 334555555554443
No 157
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=77.53 E-value=0.15 Score=44.64 Aligned_cols=61 Identities=10% Similarity=-0.013 Sum_probs=42.0
Q ss_pred CCccccEEEEecccccCCCccccccCCCCc-cCCcceEEeCCCCCCC-----CCCCC-CCCCceEEEcCCCC
Q 046172 128 KMHKLRFLKFYNSISEGKSKCMVSNCQGPI-LAKVRYFHWDGYPLTS-----LPSNI-YPDKLVFLEIPDSN 192 (198)
Q Consensus 128 ~m~~Lr~L~l~~~~~~~~~~~~~~lp~~l~-l~~Lr~L~~~~~~l~~-----LP~~~-~l~~L~~L~L~~S~ 192 (198)
++++|+.|++.++... ....++.-.. +++|+.|++.+|.+.. ++.-. ...+|+.|+|+++.
T Consensus 128 ~~~~L~~L~L~~~~~~----~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~ 195 (594)
T 2p1m_B 128 SFKNFKVLVLSSCEGF----STDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLA 195 (594)
T ss_dssp HCTTCCEEEEESCEEE----EHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCC
T ss_pred hCCCCcEEeCCCcCCC----CHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccC
Confidence 6789999999876310 0112344444 8899999999987543 43333 57799999999875
No 158
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=76.76 E-value=0.31 Score=40.94 Aligned_cols=11 Identities=27% Similarity=0.492 Sum_probs=6.6
Q ss_pred CCccccEEEEe
Q 046172 128 KMHKLRFLKFY 138 (198)
Q Consensus 128 ~m~~Lr~L~l~ 138 (198)
++++|+.|+++
T Consensus 217 ~lp~L~~L~L~ 227 (362)
T 2ra8_A 217 DLPNLEKLVLY 227 (362)
T ss_dssp BCTTCCEEEEE
T ss_pred cCCCCcEEEEe
Confidence 45666666664
No 159
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=76.40 E-value=3.5 Score=34.74 Aligned_cols=73 Identities=12% Similarity=0.154 Sum_probs=40.8
Q ss_pred cChhhhcCCccccEEEEecccc--------cCCCccccccCCC--------Cc-cCCcceEEeCCCCCCCCCCC-C-C-C
Q 046172 121 LNLDTFTKMHKLRFLKFYNSIS--------EGKSKCMVSNCQG--------PI-LAKVRYFHWDGYPLTSLPSN-I-Y-P 180 (198)
Q Consensus 121 ~~~~~f~~m~~Lr~L~l~~~~~--------~~~~~~~~~lp~~--------l~-l~~Lr~L~~~~~~l~~LP~~-~-~-l 180 (198)
+...+|.++.+|+.+.+.+... .|.....+.+|.+ +. . +|+.+.+.+.....++.. | . +
T Consensus 291 I~~~aF~~c~~L~~l~l~~~i~~I~~~aF~~c~~L~~l~lp~~l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~ 369 (401)
T 4fdw_A 291 IHPYCLEGCPKLARFEIPESIRILGQGLLGGNRKVTQLTIPANVTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFP 369 (401)
T ss_dssp ECTTTTTTCTTCCEECCCTTCCEECTTTTTTCCSCCEEEECTTCCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSC
T ss_pred ECHHHhhCCccCCeEEeCCceEEEhhhhhcCCCCccEEEECccccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCCC
Confidence 5566666666666666653211 1111122233332 23 5 788888877766666644 4 2 4
Q ss_pred CCceEEEcCCCCcc
Q 046172 181 DKLVFLEIPDSNIE 194 (198)
Q Consensus 181 ~~L~~L~L~~S~i~ 194 (198)
.++..|.++...++
T Consensus 370 ~~l~~l~vp~~~~~ 383 (401)
T 4fdw_A 370 DDITVIRVPAESVE 383 (401)
T ss_dssp TTCCEEEECGGGHH
T ss_pred CCccEEEeCHHHHH
Confidence 57778888776654
No 160
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=70.67 E-value=8.3 Score=31.49 Aligned_cols=33 Identities=15% Similarity=0.170 Sum_probs=19.3
Q ss_pred cCCcceEEeCCCCCCCCCCC-C-CCCCceEEEcCC
Q 046172 158 LAKVRYFHWDGYPLTSLPSN-I-YPDKLVFLEIPD 190 (198)
Q Consensus 158 l~~Lr~L~~~~~~l~~LP~~-~-~l~~L~~L~L~~ 190 (198)
..+|..+.+.+..++.++.. | +..+|..+.|+.
T Consensus 285 c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~ 319 (379)
T 4h09_A 285 CSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPT 319 (379)
T ss_dssp CTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCT
T ss_pred ccccccccccccccceehhhhhcCCCCCCEEEcCc
Confidence 45666666665556666543 4 456666666654
No 161
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=56.24 E-value=8.3 Score=31.87 Aligned_cols=70 Identities=16% Similarity=0.083 Sum_probs=39.3
Q ss_pred cChhhhcCCccccEEEEecccc--------cCCCccccccCCCC--------c-cCCcceEEeCCCCCCCCCCC-C-CCC
Q 046172 121 LNLDTFTKMHKLRFLKFYNSIS--------EGKSKCMVSNCQGP--------I-LAKVRYFHWDGYPLTSLPSN-I-YPD 181 (198)
Q Consensus 121 ~~~~~f~~m~~Lr~L~l~~~~~--------~~~~~~~~~lp~~l--------~-l~~Lr~L~~~~~~l~~LP~~-~-~l~ 181 (198)
++..+|.++.+|+.+.+.+... .|.....+.+|.++ . ..+|+.+.+... +++++.. | +..
T Consensus 288 i~~~~F~~~~~L~~i~l~~~i~~I~~~aF~~c~~L~~i~lp~~v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~ 366 (394)
T 4fs7_A 288 VPEKTFYGCSSLTEVKLLDSVKFIGEEAFESCTSLVSIDLPYLVEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCI 366 (394)
T ss_dssp ECTTTTTTCTTCCEEEECTTCCEECTTTTTTCTTCCEECCCTTCCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCT
T ss_pred eccccccccccccccccccccceechhhhcCCCCCCEEEeCCcccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCC
Confidence 4566777777777777654311 12222233444433 2 566777766443 6666643 5 467
Q ss_pred CceEEEcCCC
Q 046172 182 KLVFLEIPDS 191 (198)
Q Consensus 182 ~L~~L~L~~S 191 (198)
+|..++++.+
T Consensus 367 ~L~~i~lp~~ 376 (394)
T 4fs7_A 367 NLKKVELPKR 376 (394)
T ss_dssp TCCEEEEEGG
T ss_pred CCCEEEECCC
Confidence 7888877754
No 162
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=56.11 E-value=25 Score=28.87 Aligned_cols=33 Identities=15% Similarity=0.184 Sum_probs=16.8
Q ss_pred cCCcceEEeCCCCCCCCCCC-C-CCCCceEEEcCCC
Q 046172 158 LAKVRYFHWDGYPLTSLPSN-I-YPDKLVFLEIPDS 191 (198)
Q Consensus 158 l~~Lr~L~~~~~~l~~LP~~-~-~l~~L~~L~L~~S 191 (198)
..+|+.+.+.. .+.+++.. | +..+|..++++++
T Consensus 333 C~~L~~i~ip~-sv~~I~~~aF~~C~~L~~i~~~~~ 367 (394)
T 4gt6_A 333 CEQLERIAIPS-SVTKIPESAFSNCTALNNIEYSGS 367 (394)
T ss_dssp CTTCCEEEECT-TCCBCCGGGGTTCTTCCEEEESSC
T ss_pred CCCCCEEEECc-ccCEEhHhHhhCCCCCCEEEECCc
Confidence 45555555532 24455433 4 4566666666554
No 163
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=55.40 E-value=17 Score=29.96 Aligned_cols=63 Identities=13% Similarity=0.193 Sum_probs=38.0
Q ss_pred ccChhhhcCCccccEEEEecccccCCCccccccCCCCc--cCCcceEEeCCCCCCCCCCC-C-CCCCceEEEcCCC
Q 046172 120 GLNLDTFTKMHKLRFLKFYNSISEGKSKCMVSNCQGPI--LAKVRYFHWDGYPLTSLPSN-I-YPDKLVFLEIPDS 191 (198)
Q Consensus 120 ~~~~~~f~~m~~Lr~L~l~~~~~~~~~~~~~~lp~~l~--l~~Lr~L~~~~~~l~~LP~~-~-~l~~L~~L~L~~S 191 (198)
.+...+|.++.+|+.+.+... ...++.... ..+|+.+.+.. .++.++.. | +..+|..+.++.+
T Consensus 278 ~I~~~aF~~c~~L~~i~l~~~--------i~~I~~~aF~~c~~L~~i~lp~-~v~~I~~~aF~~C~~L~~i~ip~s 344 (394)
T 4gt6_A 278 SIGTGAFMNCPALQDIEFSSR--------ITELPESVFAGCISLKSIDIPE-GITQILDDAFAGCEQLERIAIPSS 344 (394)
T ss_dssp EECTTTTTTCTTCCEEECCTT--------CCEECTTTTTTCTTCCEEECCT-TCCEECTTTTTTCTTCCEEEECTT
T ss_pred eecCcccccccccccccCCCc--------ccccCceeecCCCCcCEEEeCC-cccEehHhHhhCCCCCCEEEECcc
Confidence 345667777777777776542 234555433 66777777643 25556543 5 4677777777654
No 164
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=52.80 E-value=15 Score=29.91 Aligned_cols=62 Identities=13% Similarity=0.036 Sum_probs=34.6
Q ss_pred ChhhhcCCccccEEEEecccccCCCccccccCCC-Cc-cCCcceEEeCCCCCCCCCCC-C-CCCCceEEEcCCC
Q 046172 122 NLDTFTKMHKLRFLKFYNSISEGKSKCMVSNCQG-PI-LAKVRYFHWDGYPLTSLPSN-I-YPDKLVFLEIPDS 191 (198)
Q Consensus 122 ~~~~f~~m~~Lr~L~l~~~~~~~~~~~~~~lp~~-l~-l~~Lr~L~~~~~~l~~LP~~-~-~l~~L~~L~L~~S 191 (198)
...+|.++.+|+.+.+.+.. ...++.. +. ..+|+.+.+.. .+++++.. | +..+|..+.++.+
T Consensus 278 ~~~aF~~c~~L~~i~l~~~~-------i~~I~~~aF~~c~~L~~i~lp~-~l~~I~~~aF~~C~~L~~i~ip~~ 343 (379)
T 4h09_A 278 PYLLCSGCSNLTKVVMDNSA-------IETLEPRVFMDCVKLSSVTLPT-ALKTIQVYAFKNCKALSTISYPKS 343 (379)
T ss_dssp CTTTTTTCTTCCEEEECCTT-------CCEECTTTTTTCTTCCEEECCT-TCCEECTTTTTTCTTCCCCCCCTT
T ss_pred cccccccccccccccccccc-------cceehhhhhcCCCCCCEEEcCc-cccEEHHHHhhCCCCCCEEEECCc
Confidence 34455555555555554321 1233332 33 67777777743 36666643 5 4677887777754
No 165
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=45.63 E-value=16 Score=27.30 Aligned_cols=59 Identities=12% Similarity=0.049 Sum_probs=37.5
Q ss_pred ccccEEEEecccccCCCccccccCCCCc-cCCcceEEeCCCC-CCC-----CCCCCC-CCCceEEEcCCCC-cc
Q 046172 130 HKLRFLKFYNSISEGKSKCMVSNCQGPI-LAKVRYFHWDGYP-LTS-----LPSNIY-PDKLVFLEIPDSN-IE 194 (198)
Q Consensus 130 ~~Lr~L~l~~~~~~~~~~~~~~lp~~l~-l~~Lr~L~~~~~~-l~~-----LP~~~~-l~~L~~L~L~~S~-i~ 194 (198)
.+|+.|+++++.+...+ . ..+. +++|+.|++.+|+ +.. |...-+ ..+|++|+|+++. |+
T Consensus 61 ~~L~~LDLs~~~Itd~G--L----~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~IT 128 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIG--F----DHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVT 128 (176)
T ss_dssp CCEEEEEEESCCCCGGG--G----GGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCC
T ss_pred ceEeEEeCcCCCccHHH--H----HHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCC
Confidence 46999999987531111 1 1234 8899999999997 432 221100 2379999999874 54
No 166
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=44.78 E-value=29 Score=28.45 Aligned_cols=74 Identities=11% Similarity=0.020 Sum_probs=45.4
Q ss_pred cccChhhhcCCccccEEEEecccc------cCCCccccccCCCC--------c-cCCcceEEeCCCCCCCCCC-CC-CCC
Q 046172 119 IGLNLDTFTKMHKLRFLKFYNSIS------EGKSKCMVSNCQGP--------I-LAKVRYFHWDGYPLTSLPS-NI-YPD 181 (198)
Q Consensus 119 ~~~~~~~f~~m~~Lr~L~l~~~~~------~~~~~~~~~lp~~l--------~-l~~Lr~L~~~~~~l~~LP~-~~-~l~ 181 (198)
..+...+|.++.+|+.+.+..... .|.....+.+|.++ . ..+|+.+.+.. .+..++. .| +..
T Consensus 265 ~~i~~~~F~~~~~l~~~~~~~~~i~~~~F~~~~~L~~i~l~~~i~~I~~~aF~~c~~L~~i~lp~-~v~~I~~~aF~~c~ 343 (394)
T 4fs7_A 265 LRIGGSLFYNCSGLKKVIYGSVIVPEKTFYGCSSLTEVKLLDSVKFIGEEAFESCTSLVSIDLPY-LVEEIGKRSFRGCT 343 (394)
T ss_dssp CEECSCTTTTCTTCCEEEECSSEECTTTTTTCTTCCEEEECTTCCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCT
T ss_pred ceeeccccccccccceeccCceeeccccccccccccccccccccceechhhhcCCCCCCEEEeCC-cccEEhHHhccCCC
Confidence 346678899999999888764322 12222234445433 2 56677777643 2566654 35 578
Q ss_pred CceEEEcCCCCcc
Q 046172 182 KLVFLEIPDSNIE 194 (198)
Q Consensus 182 ~L~~L~L~~S~i~ 194 (198)
+|..++++.+ ++
T Consensus 344 ~L~~i~lp~~-l~ 355 (394)
T 4fs7_A 344 SLSNINFPLS-LR 355 (394)
T ss_dssp TCCEECCCTT-CC
T ss_pred CCCEEEECcc-cc
Confidence 8888888865 44
No 167
>3ukw_C Bimax1 peptide; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding, protein transport-IN complex; HET: BTB; 2.10A {Mus musculus}
Probab=26.14 E-value=29 Score=17.19 Aligned_cols=9 Identities=56% Similarity=1.280 Sum_probs=6.0
Q ss_pred CCCCceecc
Q 046172 80 NPGERSRLW 88 (198)
Q Consensus 80 ~~~k~~rl~ 88 (198)
.|.||.|||
T Consensus 20 pprkrkrlw 28 (28)
T 3ukw_C 20 PPRKRKRLW 28 (28)
T ss_dssp CCSSCCCCC
T ss_pred cchhhhccC
Confidence 356777776
No 168
>2xvc_A ESCRT-III, SSO0910; cell cycle, cell division, cytokinesis, winged-helix; 2.15A {Sulfolobus solfataricus}
Probab=25.58 E-value=21 Score=21.67 Aligned_cols=13 Identities=38% Similarity=0.616 Sum_probs=9.9
Q ss_pred hhhcccCCcceee
Q 046172 43 ISDLVNKSLIVIH 55 (198)
Q Consensus 43 i~~L~~~sLi~~~ 55 (198)
++.|.+|+||.+.
T Consensus 46 LrrLe~KGLI~le 58 (59)
T 2xvc_A 46 LEALKNKGLIAVE 58 (59)
T ss_dssp HHHHHHTTSEEEE
T ss_pred HHHHHHCCCeecc
Confidence 4678889888763
Done!