BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 046173
(308 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9LND7|SKI16_ARATH F-box protein SKIP16 OS=Arabidopsis thaliana GN=SKIP16 PE=1 SV=1
Length = 436
Score = 301 bits (770), Expect = 6e-81, Method: Compositional matrix adjust.
Identities = 174/362 (48%), Positives = 214/362 (59%), Gaps = 59/362 (16%)
Query: 1 MGCFDFYDDVKRHWDRFKKWLTENFPEAKATLRKGASEADIQELEKSLKVKLPVPTRILY 60
M ++ V+ WD K+WLT NFPEAKATLRKG +E D+QE E SLKVKLP+PTR+LY
Sbjct: 80 MYPWNLVKRVRLCWDNLKQWLTLNFPEAKATLRKGVTEDDLQEFETSLKVKLPLPTRLLY 139
Query: 61 RFCDGQECQTDDFESIGSMGLIGGYSFYGHLVNVYLIPLSHIIMETKE-IRRQLHFPGRD 119
RF DGQE + + GS+GLIGGYS Y H VNVYL+PL ++ ETKE R L F R
Sbjct: 140 RFVDGQELSSPNGLD-GSLGLIGGYSAYSHDVNVYLLPLKEVMRETKESFMRDLGFSSRL 198
Query: 120 KYVVLASSSTYSEKFFFLNCTNGQLYVGTKNLLSDGEIIPCVPNALISLGHSFNSDQQQD 179
+V+A+S S K F L+CT GQL+ GT N +++PCVP+AL+ H N DQQQD
Sbjct: 199 DLIVMAASVVASLKIFLLDCTTGQLFTGTSN----RQLLPCVPDALVRSVHDTNGDQQQD 254
Query: 180 --LCCYEE----------------NFKFINLFPEEPSHCSIAVTNGMN-----------T 210
L EE N K I+LFPE P CS++VTNG+ +
Sbjct: 255 AMLLWLEEHGRRLQTGTINVRQQNNVKSISLFPEIPPLCSVSVTNGVQVRASSVFIPEIS 314
Query: 211 CLRIQ----------FTSLLPEGCIINGMTFSSCLLQHRHWVIHAYNVVLSDVSGEAVIG 260
LR Q SL+PEGCI+NG SSC L RHWVI A N V+ +V+GEAVIG
Sbjct: 315 NLRDQPPAYWYAYSIRMSLMPEGCILNGTHHSSCQLYWRHWVIRADNEVIDNVNGEAVIG 374
Query: 261 M--------------SCTPLPGSSGSVRGSLMFVPARLADPKGSPFEVEVAEFPLQQPDY 306
SC+ P ++GS+ GS FVP L DPKGS FEV+V EFPL+ PDY
Sbjct: 375 KYPLLQAGEEEFVYESCSSFPTTAGSIDGSFTFVPGSLRDPKGSQFEVKVVEFPLELPDY 434
Query: 307 IF 308
IF
Sbjct: 435 IF 436
>sp|Q6BW41|SMI1_DEBHA KNR4/SMI1 homolog 1 OS=Debaryomyces hansenii (strain ATCC 36239 /
CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968)
GN=DEHA2B14542g PE=3 SV=2
Length = 451
Score = 52.8 bits (125), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 53/108 (49%), Gaps = 13/108 (12%)
Query: 4 FDFYDDVKRHWDRFKKWLTENFPEAKATLRKGASEADIQELEKSLKVKLPVPTRILYRFC 63
FD +V+ W K WL + P+ +TL+ ++AD+ + +K L +KLP Y+
Sbjct: 67 FDGVHEVRLAWRHIKNWLLKYSPDLNSTLQSPCTDADLSDFQKDLNIKLPNCLIEFYKIT 126
Query: 64 DGQECQTDDFESIGSMGLIGGYSFYGHLVNVYLIPLSHIIMETKEIRR 111
DGQ F GS GL+ G + L+P+ +++ T+ R+
Sbjct: 127 DGQSY----FNDNGSGGLVFG---------LKLMPIDEVMVMTEHWRK 161
>sp|Q9UK99|FBX3_HUMAN F-box only protein 3 OS=Homo sapiens GN=FBXO3 PE=1 SV=3
Length = 471
Score = 50.4 bits (119), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 40/81 (49%), Gaps = 2/81 (2%)
Query: 5 DFYDDVKRHWDRFKKWLTENFPEAKATLRKGASEADIQELEKSLKVKLPVPTRILYRFCD 64
D Y +K+ WD KK+L P +L++GA E D+ +E + KLP R YR +
Sbjct: 91 DHYAAIKKAWDDLKKYLEPRCPRMVLSLKEGAREEDLDAVEAQIGCKLPDDYRCSYRIHN 150
Query: 65 GQECQTDDFESIGSMGLIGGY 85
GQ+ +GSM L Y
Sbjct: 151 GQKLVVPGL--LGSMALSNHY 169
>sp|A6H7H7|FBX3_BOVIN F-box only protein 3 OS=Bos taurus GN=FBXO3 PE=2 SV=1
Length = 469
Score = 50.4 bits (119), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 40/81 (49%), Gaps = 2/81 (2%)
Query: 5 DFYDDVKRHWDRFKKWLTENFPEAKATLRKGASEADIQELEKSLKVKLPVPTRILYRFCD 64
D Y +K+ WD KK+L P +L++GA E D+ +E + KLP R YR +
Sbjct: 91 DHYAAIKKAWDDLKKYLEPRCPRMVLSLKEGAREEDLDAVEAQIGCKLPDDYRCSYRIHN 150
Query: 65 GQECQTDDFESIGSMGLIGGY 85
GQ+ +GSM L Y
Sbjct: 151 GQKLVVPGL--LGSMALSNHY 169
>sp|D4ABP9|FBX3_RAT F-box only protein 3 OS=Rattus norvegicus GN=Fbxo3 PE=3 SV=1
Length = 480
Score = 48.9 bits (115), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 39/79 (49%), Gaps = 2/79 (2%)
Query: 7 YDDVKRHWDRFKKWLTENFPEAKATLRKGASEADIQELEKSLKVKLPVPTRILYRFCDGQ 66
Y +K+ WD KK+L P +L++GA E D+ +E + KLP R YR +GQ
Sbjct: 93 YAAIKKAWDDLKKYLEPRCPRMVLSLKEGAREEDLDAVEAQIGCKLPDDYRCSYRIHNGQ 152
Query: 67 ECQTDDFESIGSMGLIGGY 85
+ +GSM L Y
Sbjct: 153 KLVVPGL--LGSMALSNHY 169
>sp|Q6BJY4|SMI2_DEBHA KNR4/SMI1 homolog 2 OS=Debaryomyces hansenii (strain ATCC 36239 /
CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968)
GN=DEHA2F26422g PE=3 SV=2
Length = 590
Score = 48.1 bits (113), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Query: 14 WDRFKKWLTENFPEAKATLRKGASEADIQELEKSLKV-KLPVPTRILYRFCDGQ 66
WDR + WL E +PE L G + AD+ E E L LPV R Y+ DGQ
Sbjct: 121 WDRIESWLEEEYPELGDNLNDGVTTADLNEFENDLGCGSLPVEIRQFYKRHDGQ 174
>sp|Q6FL35|SMI1_CANGA KNR4/SMI1 homolog OS=Candida glabrata (strain ATCC 2001 / CBS 138 /
JCM 3761 / NBRC 0622 / NRRL Y-65) GN=CAGL0L06534g PE=3
SV=1
Length = 584
Score = 47.4 bits (111), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 46/98 (46%), Gaps = 14/98 (14%)
Query: 14 WDRFKKWLTENFPEAKATLRKGASEADIQELEKSLKVKLPVPTRILYRFCDGQECQTDDF 73
W W +E P+ ATL + DI+ E+ L+V LP + YR DGQE D
Sbjct: 82 WRHIDTWTSEYNPDLNATLSDPCTANDIKHAEEDLEVVLPKALKASYRIHDGQE----DL 137
Query: 74 ESI-GSMGLIGGYSFYGHLVNVYLIPLSHIIMETKEIR 110
ES+ G+ GLI G + L+ L I+ T+ R
Sbjct: 138 ESMTGTSGLIYG---------LQLMTLDEIVAMTQRWR 166
>sp|Q9DC63|FBX3_MOUSE F-box only protein 3 OS=Mus musculus GN=Fbxo3 PE=2 SV=1
Length = 480
Score = 47.4 bits (111), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 39/81 (48%), Gaps = 2/81 (2%)
Query: 5 DFYDDVKRHWDRFKKWLTENFPEAKATLRKGASEADIQELEKSLKVKLPVPTRILYRFCD 64
D Y +K+ W KK+L P +L++GA E D+ +E + KLP R YR +
Sbjct: 91 DHYAAIKKAWRDLKKYLEPRCPRMVLSLKEGAREEDLDAVEAQIGCKLPDDYRCSYRIHN 150
Query: 65 GQECQTDDFESIGSMGLIGGY 85
GQ+ +GSM L Y
Sbjct: 151 GQKLVVPGL--LGSMALSNHY 169
>sp|P32566|SMI1_YEAST Cell wall assembly regulator SMI1 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=SMI1 PE=1 SV=1
Length = 505
Score = 45.8 bits (107), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 47/98 (47%), Gaps = 14/98 (14%)
Query: 14 WDRFKKWLTENFPEAKATLRKGASEADIQELEKSLKVKLPVPTRILYRFCDGQECQTDDF 73
W W +E+ P+ ATL ++ DI E+ L+V P P + ++ DGQE D
Sbjct: 94 WRHIDFWTSEHNPDLNATLSDPCTQNDITHAEEDLEVSFPNPVKASFKIHDGQE----DL 149
Query: 74 ESI-GSMGLIGGYSFYGHLVNVYLIPLSHIIMETKEIR 110
ES+ G+ GL FYG L+ L ++ T+ R
Sbjct: 150 ESMTGTSGL-----FYG----FQLMTLDQVVAMTQAWR 178
>sp|Q75AQ9|SMI1_ASHGO KNR4/SMI1 homolog OS=Ashbya gossypii (strain ATCC 10895 / CBS
109.51 / FGSC 9923 / NRRL Y-1056) GN=ADL139W PE=3 SV=2
Length = 657
Score = 43.5 bits (101), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 35/77 (45%), Gaps = 5/77 (6%)
Query: 14 WDRFKKWLTENFPEAKATLRKGASEADIQELEKSLKVKLPVPTRILYRFCDGQECQTDDF 73
W W +E+ P+ ATL + DI EK L + P R R DGQE D
Sbjct: 70 WRHIDSWCSEHNPDLYATLSSPCTNNDIMWAEKDLAITFPAAVRASLRTHDGQE----DV 125
Query: 74 ESI-GSMGLIGGYSFYG 89
ES+ G+ GLI G G
Sbjct: 126 ESMQGASGLIYGLKLMG 142
>sp|Q6CN28|SMI1_KLULA KNR4/SMI1 homolog OS=Kluyveromyces lactis (strain ATCC 8585 / CBS
2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37)
GN=KLLA0E15862g PE=3 SV=1
Length = 535
Score = 41.6 bits (96), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 41/97 (42%), Gaps = 12/97 (12%)
Query: 14 WDRFKKWLTENFPEAKATLRKGASEADIQELEKSLKVKLPVPTRILYRFCDGQECQTDDF 73
W W +++ P+ ATL + DI EK L + P R R DGQ
Sbjct: 74 WRHIDNWTSQHNPDLAATLSDPCTRHDINNAEKDLDIIFPASVRASLRLHDGQ------- 126
Query: 74 ESIGSMGLIGGYSFYGHLVNVYLIPLSHIIMETKEIR 110
E + SM GG F+G + L+ L I+ T+ R
Sbjct: 127 EDLVSMTGTGGL-FFG----LQLMGLDEIVQMTRTWR 158
>sp|Q6CDX0|SMI1_YARLI KNR4/SMI1 homolog OS=Yarrowia lipolytica (strain CLIB 122 / E 150)
GN=YALI0B20570g PE=3 SV=1
Length = 713
Score = 40.8 bits (94), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 29/58 (50%)
Query: 10 VKRHWDRFKKWLTENFPEAKATLRKGASEADIQELEKSLKVKLPVPTRILYRFCDGQE 67
V W+R KW E++PE L A+ +D+ ELE L LP+ R DGQE
Sbjct: 146 VAMSWERIDKWADEHYPELNDQLCYPATASDLNELEADLDCSLPLDVRDSCLIHDGQE 203
>sp|P38678|GS1_NEUCR Glucan synthesis regulatory protein OS=Neurospora crassa (strain
ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC
987) GN=gs-1 PE=2 SV=1
Length = 532
Score = 40.4 bits (93), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 29/58 (50%)
Query: 10 VKRHWDRFKKWLTENFPEAKATLRKGASEADIQELEKSLKVKLPVPTRILYRFCDGQE 67
V W++ +W EN+PE L +G + D+ ELE L LP R + DGQE
Sbjct: 129 VASSWEKIDRWAEENYPELFDQLGEGCTVNDLNELEYQLDCTLPQDLRQSLQIHDGQE 186
>sp|Q89VE6|APAG_BRAJA Protein ApaG OS=Bradyrhizobium japonicum (strain USDA 110) GN=apaG
PE=3 SV=2
Length = 130
Score = 38.9 bits (89), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 37/90 (41%), Gaps = 8/90 (8%)
Query: 224 CIINGMTFSSCLLQHRHWVIHAYNVVLSDVSGEAVIGMSCTPLPG-----SSG---SVRG 275
+I + L+ RHW+I +V GE V+G T PG +SG S
Sbjct: 35 IVITNSGEETVQLKTRHWIITDATGRQQEVKGEGVVGEQPTLAPGERFEYTSGVPLSTAS 94
Query: 276 SLMFVPARLADPKGSPFEVEVAEFPLQQPD 305
M ++ G FE++V F L PD
Sbjct: 95 GFMTGRYQMVSESGERFEIDVPTFSLDSPD 124
>sp|O13766|MDE10_SCHPO Zinc metalloprotease mde10 OS=Schizosaccharomyces pombe (strain 972
/ ATCC 24843) GN=mde10 PE=1 SV=1
Length = 512
Score = 38.1 bits (87), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 35/80 (43%), Gaps = 3/80 (3%)
Query: 112 QLHFPGRDKYVVLASSSTYSEKFFFL--NCTNGQLYVGTK-NLLSDGEIIPCVPNALISL 168
QLH KYV L+ S SEK C NG + G + + D E PC L
Sbjct: 289 QLHSLVEKKYVSLSCLSKPSEKSVLRLGTCGNGIVEDGEECDCGEDCENNPCCDGKTCKL 348
Query: 169 GHSFNSDQQQDLCCYEENFK 188
D QQD CCY+ +FK
Sbjct: 349 TKGSLCDDQQDACCYQCHFK 368
>sp|B3QCE1|APAG_RHOPT Protein ApaG OS=Rhodopseudomonas palustris (strain TIE-1) GN=apaG
PE=3 SV=1
Length = 130
Score = 37.7 bits (86), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 39/95 (41%), Gaps = 18/95 (18%)
Query: 224 CIINGMTFSSCLLQHRHWVIHAYNVVLSDVSGEAVIG-------------MSCTPLPGSS 270
+I + L+ RHWVI + +V GE V+G S PLP +S
Sbjct: 35 VVITNSGEETVKLRTRHWVITDASGRTQEVRGEGVVGEQPVLAPGERFEYTSGVPLPTAS 94
Query: 271 GSVRGSLMFVPARLADPKGSPFEVEVAEFPLQQPD 305
G + G ++ G FE++V F L P+
Sbjct: 95 GFMAGRY-----QMETEAGEKFEIDVPPFSLDSPE 124
>sp|Q6N0J2|APAG_RHOPA Protein ApaG OS=Rhodopseudomonas palustris (strain ATCC BAA-98 /
CGA009) GN=apaG PE=3 SV=1
Length = 130
Score = 37.7 bits (86), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 39/95 (41%), Gaps = 18/95 (18%)
Query: 224 CIINGMTFSSCLLQHRHWVIHAYNVVLSDVSGEAVIG-------------MSCTPLPGSS 270
+I + L+ RHWVI + +V GE V+G S PLP +S
Sbjct: 35 VVITNSGEETVKLRTRHWVITDASGRTQEVRGEGVVGEQPVLAPGERFEYTSGVPLPTAS 94
Query: 271 GSVRGSLMFVPARLADPKGSPFEVEVAEFPLQQPD 305
G + G ++ G FE++V F L P+
Sbjct: 95 GFMAGRY-----QMETEAGEKFEIDVPPFSLDSPE 124
>sp|O14362|SMI1_SCHPO Cell wall biosynthesis/cell cycle regulator smi1
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=smi1 PE=1 SV=1
Length = 504
Score = 37.0 bits (84), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 27/58 (46%)
Query: 10 VKRHWDRFKKWLTENFPEAKATLRKGASEADIQELEKSLKVKLPVPTRILYRFCDGQE 67
V W R +W EN+ E L GA+ AD+ LE L+ LP R DGQ+
Sbjct: 128 VSESWRRIDRWAEENYYELYCQLCYGATVADVDSLEYELECTLPRDVRESLYIHDGQD 185
>sp|Q2VZE7|APAG_MAGSA Protein ApaG OS=Magnetospirillum magneticum (strain AMB-1 / ATCC
700264) GN=apaG PE=3 SV=1
Length = 130
Score = 36.2 bits (82), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 41/93 (44%), Gaps = 19/93 (20%)
Query: 225 IINGMTFSSCLLQHRHWVIHAYNVVLSDVSGEAVIG-------------MSCTPLPGSSG 271
I+N + + LL+ RHWVI + +V G V+G S TPLP SG
Sbjct: 37 IVNKGSRTVQLLR-RHWVITDAIGRVQEVKGPGVVGEQPVLRPGDAYEYTSGTPLPTPSG 95
Query: 272 SVRGSLMFVPARLADPKGSPFEVEVAEFPLQQP 304
+ G+ + D GS F++ + F L P
Sbjct: 96 IMVGTY-----EMEDEDGSAFDIAIPAFSLDSP 123
>sp|A8H0V1|APAG_SHEPA Protein ApaG OS=Shewanella pealeana (strain ATCC 700345 / ANG-SQ1)
GN=apaG PE=3 SV=1
Length = 126
Score = 35.0 bits (79), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 40/87 (45%), Gaps = 8/87 (9%)
Query: 226 INGMTFSSCLLQHRHWVIHAYNVVLSDVSGEAVIGMSCTPLPGSSGS-VRGSLMFVPA-- 282
I+ ++ + L+ RHW I + S+V G V+G + T P SS G+++ P
Sbjct: 36 ISNLSNEAITLKSRHWCITDADGRKSEVHGTGVVGETPTIKPNSSYEYTSGTVLETPLGV 95
Query: 283 -----RLADPKGSPFEVEVAEFPLQQP 304
+ D G+ FE ++ F L P
Sbjct: 96 MEGSYTMVDSDGNEFEAPISAFRLSIP 122
>sp|Q2IGT4|APAG_ANADE Protein ApaG OS=Anaeromyxobacter dehalogenans (strain 2CP-C)
GN=apaG PE=3 SV=1
Length = 125
Score = 34.7 bits (78), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 35/128 (27%), Positives = 47/128 (36%), Gaps = 32/128 (25%)
Query: 201 SIAVTNGMNTCLRIQFTSLLPEGCIINGMTFSSCL-----------LQHRHWVIHAYNVV 249
S AVT G+ +R F PE FS + L RHW+I N
Sbjct: 2 STAVTEGIEVTVRSTFR---PERSEPGRFLFSYSVRVVNQGEAPAQLVSRHWIIVDANGE 58
Query: 250 LSDVSGEAVIGMSCTPLPGS-------------SGSVRGSLMFVPARLADPKGSPFEVEV 296
+V G+ V+G PG GS+RG+ R+ G F+ +
Sbjct: 59 REEVVGDGVVGQQPHLEPGEHFEYTSFCVLKTPHGSMRGTY-----RMVRDDGQAFDATI 113
Query: 297 AEFPLQQP 304
A FPL P
Sbjct: 114 APFPLVVP 121
>sp|Q7VU61|APAG_BORPE Protein ApaG OS=Bordetella pertussis (strain Tohama I / ATCC
BAA-589 / NCTC 13251) GN=apaG PE=1 SV=1
Length = 131
Score = 34.7 bits (78), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 34/79 (43%), Gaps = 18/79 (22%)
Query: 239 RHWVIHAYNVVLSDVSGEAVIGM-------------SCTPLPGSSGSVRGSLMFVPARLA 285
RHW+I + +V G V+G S PLP G++RG+ V
Sbjct: 54 RHWIITDGEERVQEVRGLGVVGQQPLLAPGETFEYTSGCPLPTPIGTMRGTYHCV----- 108
Query: 286 DPKGSPFEVEVAEFPLQQP 304
G PFEV +AEF L P
Sbjct: 109 GENGIPFEVPIAEFLLAMP 127
>sp|Q7W393|APAG_BORPA Protein ApaG OS=Bordetella parapertussis (strain 12822 / ATCC
BAA-587 / NCTC 13253) GN=apaG PE=3 SV=1
Length = 131
Score = 34.7 bits (78), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 34/79 (43%), Gaps = 18/79 (22%)
Query: 239 RHWVIHAYNVVLSDVSGEAVIGM-------------SCTPLPGSSGSVRGSLMFVPARLA 285
RHW+I + +V G V+G S PLP G++RG+ V
Sbjct: 54 RHWIITDGEERVQEVRGLGVVGQQPLLAPGETFEYTSGCPLPTPIGTMRGTYHCV----- 108
Query: 286 DPKGSPFEVEVAEFPLQQP 304
G PFEV +AEF L P
Sbjct: 109 GENGIPFEVPIAEFLLAMP 127
>sp|Q7WEL1|APAG_BORBR Protein ApaG OS=Bordetella bronchiseptica (strain ATCC BAA-588 /
NCTC 13252 / RB50) GN=apaG PE=3 SV=2
Length = 131
Score = 34.7 bits (78), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 34/79 (43%), Gaps = 18/79 (22%)
Query: 239 RHWVIHAYNVVLSDVSGEAVIGM-------------SCTPLPGSSGSVRGSLMFVPARLA 285
RHW+I + +V G V+G S PLP G++RG+ V
Sbjct: 54 RHWIITDGEERVQEVRGLGVVGQQPLLAPGETFEYTSGCPLPTPIGTMRGTYHCV----- 108
Query: 286 DPKGSPFEVEVAEFPLQQP 304
G PFEV +AEF L P
Sbjct: 109 GENGIPFEVPIAEFLLAMP 127
>sp|B3PNM4|APAG_RHIE6 Protein ApaG OS=Rhizobium etli (strain CIAT 652) GN=apaG PE=3 SV=1
Length = 130
Score = 34.7 bits (78), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 41/89 (46%), Gaps = 8/89 (8%)
Query: 224 CIINGMTFSSCLLQHRHWVIHAYNVVLSDVSGEAVIGMSCTPLPG-----SSG---SVRG 275
+I+ + + L +R+W I N V+ +V+G V+G PG SSG
Sbjct: 35 IVISNNSGVAVRLVNRYWNITDQNGVVDEVTGPGVVGEQPRLSPGDTYEYSSGCPLDTPS 94
Query: 276 SLMFVPARLADPKGSPFEVEVAEFPLQQP 304
LMF ++ +G F+V++ F L P
Sbjct: 95 GLMFGHYQMETDEGELFDVDIPAFSLDSP 123
>sp|B0TV51|APAG_SHEHH Protein ApaG OS=Shewanella halifaxensis (strain HAW-EB4) GN=apaG
PE=3 SV=1
Length = 126
Score = 34.7 bits (78), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 37/87 (42%), Gaps = 8/87 (9%)
Query: 226 INGMTFSSCLLQHRHWVIHAYNVVLSDVSGEAVIGMSCTPLPGSS-GSVRGSLMFVPA-- 282
I+ + L+ RHW I N S+V G V+G + T P SS G+++ P
Sbjct: 36 IHNLGSDDVTLKRRHWCITDSNGRKSEVHGTGVVGETPTIKPNSSYKYTSGTVLETPLGV 95
Query: 283 -----RLADPKGSPFEVEVAEFPLQQP 304
+ D G F+ ++ F L P
Sbjct: 96 MEGSYTMVDSNGDEFKAPISAFRLSIP 122
>sp|B6IPQ9|APAG_RHOCS Protein ApaG OS=Rhodospirillum centenum (strain ATCC 51521 / SW)
GN=apaG PE=3 SV=1
Length = 130
Score = 34.3 bits (77), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 35/92 (38%), Gaps = 18/92 (19%)
Query: 226 INGMTFSSCLLQHRHWVIHAYNVVLSDVSGEAVIG-------------MSCTPLPGSSGS 272
I + L+ RHW + + +V G V+G S TPLP SG
Sbjct: 37 IENEGLETVQLRTRHWQVTDAQGRVQEVRGPGVVGEQPVLRPGEAFEYTSGTPLPTPSGF 96
Query: 273 VRGSLMFVPARLADPKGSPFEVEVAEFPLQQP 304
+ GS V A G FEV + F L P
Sbjct: 97 MVGSYGMVTA-----SGEAFEVRIPAFSLDSP 123
>sp|B8ELJ0|APAG_METSB Protein ApaG OS=Methylocella silvestris (strain BL2 / DSM 15510 /
NCIMB 13906) GN=apaG PE=3 SV=1
Length = 130
Score = 34.3 bits (77), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 33/80 (41%), Gaps = 8/80 (10%)
Query: 233 SCLLQHRHWVIHAYNVVLSDVSGEAVIGMSCTPLPG-----SSGS---VRGSLMFVPARL 284
+ L RHW I N L +V G V+G PG +SGS +M R+
Sbjct: 44 TVQLTARHWKITDGNGRLEEVQGPGVVGEQPILKPGETFRYTSGSNLTTPSGIMTGAYRM 103
Query: 285 ADPKGSPFEVEVAEFPLQQP 304
D G F+ ++ F L P
Sbjct: 104 VDENGEEFDAQIPVFSLDSP 123
>sp|Q82UC1|APAG_NITEU Protein ApaG OS=Nitrosomonas europaea (strain ATCC 19718 / NBRC
14298) GN=apaG PE=3 SV=1
Length = 127
Score = 33.9 bits (76), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 38/92 (41%), Gaps = 18/92 (19%)
Query: 226 INGMTFSSCLLQHRHWVIHAYNVVLSDVSGEAVIG-------------MSCTPLPGSSGS 272
IN + L RHW+I + + V +V G V+G S T + +GS
Sbjct: 37 INNTGSVASQLVSRHWIITSGDGVTREVRGLGVVGEQPLLKPGETFEYTSGTAISSIAGS 96
Query: 273 VRGSLMFVPARLADPKGSPFEVEVAEFPLQQP 304
++GS V G F VE+ EF L P
Sbjct: 97 MKGSYQMVAE-----DGFHFSVEIPEFILSVP 123
>sp|B1JE08|APAG_PSEPW Protein ApaG OS=Pseudomonas putida (strain W619) GN=apaG PE=3 SV=1
Length = 126
Score = 33.9 bits (76), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 35/77 (45%), Gaps = 8/77 (10%)
Query: 236 LQHRHWVIHAYNVVLSDVSGEAVIGMSCTPLPG-----SSGSV---RGSLMFVPARLADP 287
L RHW+I + + +V G VIG T PG SSG+V R M ++
Sbjct: 46 LMSRHWLITNGDGEVEEVRGAGVIGQQPTIEPGQSHTYSSGAVISTRVGTMQGSYQMFAE 105
Query: 288 KGSPFEVEVAEFPLQQP 304
G FE ++A F L P
Sbjct: 106 DGKRFEADIAPFRLAVP 122
>sp|A7ICI5|APAG_XANP2 Protein ApaG OS=Xanthobacter autotrophicus (strain ATCC BAA-1158 /
Py2) GN=apaG PE=3 SV=1
Length = 130
Score = 33.9 bits (76), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 35/86 (40%), Gaps = 18/86 (20%)
Query: 233 SCLLQHRHWVIHAYNVVLSDVSGEAVIG-------------MSCTPLPGSSGSVRGSLMF 279
+ L+ RHWVI N +V G V+G S PL S+G + G
Sbjct: 44 TVQLKGRHWVITDANGHTEEVHGAGVVGEEPTLPPGGRFEYTSGVPLNTSTGIMSGHYEM 103
Query: 280 VPARLADPKGSPFEVEVAEFPLQQPD 305
LAD G F +E+ F L PD
Sbjct: 104 ----LAD-NGETFSIEIPAFSLDVPD 124
>sp|A0L065|APAG_SHESA Protein ApaG OS=Shewanella sp. (strain ANA-3) GN=apaG PE=3 SV=1
Length = 126
Score = 33.5 bits (75), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 41/89 (46%), Gaps = 9/89 (10%)
Query: 224 CIINGMTFSSCLLQHRHWVIHAYNVVLSDVSGEAVIGMSCTPLPG-----SSGSVRGS-- 276
IIN + + L+ RHW+I N +S+V G V+G + T P +SG+V +
Sbjct: 35 TIIN-LGEQAAKLETRHWIITDANGKISEVQGAGVVGETPTIPPNTAYQYTSGTVLDTPL 93
Query: 277 -LMFVPARLADPKGSPFEVEVAEFPLQQP 304
+M+ + G F+ + F L P
Sbjct: 94 GIMYGTYGMVSESGEHFKATIKPFRLALP 122
>sp|Q0HLT3|APAG_SHESM Protein ApaG OS=Shewanella sp. (strain MR-4) GN=apaG PE=3 SV=1
Length = 126
Score = 33.5 bits (75), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 37/80 (46%), Gaps = 8/80 (10%)
Query: 233 SCLLQHRHWVIHAYNVVLSDVSGEAVIGMSCTPLPG-----SSGSVRGS---LMFVPARL 284
+ L+ RHW+I N +S+V G V+G + T P +SG+V + +M+ +
Sbjct: 43 AAKLETRHWIITDANGKISEVQGAGVVGETPTIPPNTAYQYTSGTVLDTPLGIMYGTYGM 102
Query: 285 ADPKGSPFEVEVAEFPLQQP 304
G F+ + F L P
Sbjct: 103 VSESGERFKATIKPFRLALP 122
>sp|Q47AB8|APAG_DECAR Protein ApaG OS=Dechloromonas aromatica (strain RCB) GN=apaG PE=3
SV=1
Length = 127
Score = 33.5 bits (75), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 34/82 (41%), Gaps = 18/82 (21%)
Query: 236 LQHRHWVIHAYNVVLSDVSGEAVIGMSCTPLPGSS-------------GSVRGSLMFVPA 282
L RHW+I N + +V G V+G PG S G+++G+ V
Sbjct: 47 LVSRHWIITDGNNEVQEVRGLGVVGKQPLLQPGESFQYTSGSSLTTAIGTMKGTYQMVAE 106
Query: 283 RLADPKGSPFEVEVAEFPLQQP 304
G+ FE E+ EF L P
Sbjct: 107 -----DGTHFEAEIPEFVLASP 123
>sp|A6WVX4|APAG_OCHA4 Protein ApaG OS=Ochrobactrum anthropi (strain ATCC 49188 / DSM 6882
/ NCTC 12168) GN=apaG PE=3 SV=1
Length = 130
Score = 33.1 bits (74), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 40/90 (44%), Gaps = 9/90 (10%)
Query: 224 CIINGMTFSSCLLQHRHWVIHAYNVVLSDVSGEAVIGMSCTPLPG-----SSG---SVRG 275
I N T + L+ R+W I N + +V G V+G T PG SSG +
Sbjct: 36 TIANNST-ETVQLRSRYWQITDANGYVEEVRGPGVVGEQPTLEPGDSFQYSSGCPLTTTS 94
Query: 276 SLMFVPARLADPKGSPFEVEVAEFPLQQPD 305
+M ++ GS FEV++ F L P+
Sbjct: 95 GVMVGRYQMQGNGGSLFEVDIPAFSLDIPE 124
>sp|P38915|SPT8_YEAST Transcription factor SPT8 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=SPT8 PE=1 SV=1
Length = 602
Score = 32.7 bits (73), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 36/87 (41%), Gaps = 8/87 (9%)
Query: 85 YSFYGHLVNVYLIPLSHIIMETKEIRRQLHFPGRD-----KYVVLASSSTYSEKFFFLNC 139
Y +Y H++N I S+ I T I Q H KY+ L S Y K+ LN
Sbjct: 148 YEYYKHMLNAAQIADSYNIYPTAAIPIQTHVNALAVSRGLKYLFLGGSDGYIRKYDLLNT 207
Query: 140 TNGQLYVGTKNLLSDGEIIPCVPNALI 166
G+L + +L + + NA I
Sbjct: 208 LEGKLSL---TILQKHSLAESIQNAGI 231
>sp|Q9Y2S7|PDIP2_HUMAN Polymerase delta-interacting protein 2 OS=Homo sapiens GN=POLDIP2
PE=1 SV=1
Length = 368
Score = 32.7 bits (73), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 33/81 (40%), Gaps = 19/81 (23%)
Query: 236 LQHRHWVIHAYNVVLSDVSGEAVIGM--------------SCTPLPGSSGSVRGSLMFVP 281
L+ RHW I + + L V G V+G S L SSG + G+
Sbjct: 279 LRERHWRIFSLSGTLETVRGRGVVGREPVLSKEQPAFQYSSHVSLQASSGHMWGTF---- 334
Query: 282 ARLADPKGSPFEVEVAEFPLQ 302
R P GS F+V + F L+
Sbjct: 335 -RFERPDGSHFDVRIPPFSLE 354
>sp|Q91VA6|PDIP2_MOUSE Polymerase delta-interacting protein 2 OS=Mus musculus GN=Poldip2
PE=2 SV=1
Length = 368
Score = 32.7 bits (73), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 33/81 (40%), Gaps = 19/81 (23%)
Query: 236 LQHRHWVIHAYNVVLSDVSGEAVIGM--------------SCTPLPGSSGSVRGSLMFVP 281
L+ RHW I + + L V G V+G S L SSG + G+
Sbjct: 279 LRERHWRIFSLSGTLETVRGRGVVGREPVLSKEQPAFQYSSHVSLQASSGHMWGTF---- 334
Query: 282 ARLADPKGSPFEVEVAEFPLQ 302
R P GS F+V + F L+
Sbjct: 335 -RFERPDGSHFDVRIPPFSLE 354
>sp|B5ZNW9|APAG_RHILW Protein ApaG OS=Rhizobium leguminosarum bv. trifolii (strain
WSM2304) GN=apaG PE=3 SV=1
Length = 130
Score = 32.7 bits (73), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 40/89 (44%), Gaps = 8/89 (8%)
Query: 224 CIINGMTFSSCLLQHRHWVIHAYNVVLSDVSGEAVIGMSCTPLPG-----SSG---SVRG 275
+I+ + + L +R+W I N + +V+G V+G PG SSG
Sbjct: 35 IVISNNSAIAVRLVNRYWNITDQNGQVDEVTGPGVVGEQPRLSPGDTYEYSSGCPLDTPS 94
Query: 276 SLMFVPARLADPKGSPFEVEVAEFPLQQP 304
LMF ++ +G F+V++ F L P
Sbjct: 95 GLMFGHYQMETDEGEMFDVDIPAFSLDSP 123
>sp|B2III9|APAG_BEII9 Protein ApaG OS=Beijerinckia indica subsp. indica (strain ATCC 9039
/ DSM 1715 / NCIB 8712) GN=apaG PE=3 SV=1
Length = 130
Score = 32.7 bits (73), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 32/85 (37%), Gaps = 18/85 (21%)
Query: 233 SCLLQHRHWVIHAYNVVLSDVSGEAVIG-------------MSCTPLPGSSGSVRGSLMF 279
+ L RHW I N L +V G ++G S PL SG + GS
Sbjct: 44 TVQLTGRHWKITDANGKLEEVQGPGIVGEQPVLKPGETFRYTSGCPLTTPSGIMTGSY-- 101
Query: 280 VPARLADPKGSPFEVEVAEFPLQQP 304
R+ KG FE + F L P
Sbjct: 102 ---RMVTEKGDVFEAAIPVFSLDSP 123
>sp|Q2KCU6|APAG_RHIEC Protein ApaG OS=Rhizobium etli (strain CFN 42 / ATCC 51251) GN=apaG
PE=3 SV=1
Length = 130
Score = 32.3 bits (72), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 40/89 (44%), Gaps = 8/89 (8%)
Query: 224 CIINGMTFSSCLLQHRHWVIHAYNVVLSDVSGEAVIGMSCTPLPG-----SSG---SVRG 275
+I+ + + L +R+W I N + +V+G V+G PG SSG
Sbjct: 35 IVISNNSGVAVRLVNRYWNITDQNGQVDEVTGPGVVGEQPRLSPGDTYEYSSGCPLDTPS 94
Query: 276 SLMFVPARLADPKGSPFEVEVAEFPLQQP 304
LMF ++ +G F+V++ F L P
Sbjct: 95 GLMFGHYQMETDEGELFDVDIPAFSLDSP 123
>sp|Q0AHS7|APAG_NITEC Protein ApaG OS=Nitrosomonas eutropha (strain C91) GN=apaG PE=3
SV=1
Length = 127
Score = 32.3 bits (72), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 37/92 (40%), Gaps = 18/92 (19%)
Query: 226 INGMTFSSCLLQHRHWVIHAYNVVLSDVSGEAVIG-------------MSCTPLPGSSGS 272
IN + + L RHW+I + +V G V+G S T + +GS
Sbjct: 37 INNIGSVASQLVSRHWIITGGDGETREVRGLGVVGEQPLLKPGESFEYTSGTAISSIAGS 96
Query: 273 VRGSLMFVPARLADPKGSPFEVEVAEFPLQQP 304
++GS V G F VE+ EF L P
Sbjct: 97 MKGSYQMVAE-----DGFHFSVEIPEFILSVP 123
>sp|Q3Z5V9|APAG_SHISS Protein ApaG OS=Shigella sonnei (strain Ss046) GN=apaG PE=3 SV=1
Length = 125
Score = 31.6 bits (70), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 38/90 (42%), Gaps = 8/90 (8%)
Query: 226 INGMTFSSCLLQHRHWVIHAYNVVLSDVSGEAVIGMSCTPLPGSSGS-VRGSLMFVPA-- 282
I + + L R+W+I N ++V GE V+G+ PG G+++ P
Sbjct: 35 IRNLGRAPVQLLGRYWLITNGNGRETEVQGEGVVGVQPLIAPGEEYQYTSGAIIETPLGT 94
Query: 283 -----RLADPKGSPFEVEVAEFPLQQPDYI 307
+ D G PF +++ F L P I
Sbjct: 95 MQGHYEMIDENGVPFSIDIPVFRLAVPTLI 124
>sp|P62675|APAG_SHIFL Protein ApaG OS=Shigella flexneri GN=apaG PE=3 SV=1
Length = 125
Score = 31.6 bits (70), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 38/90 (42%), Gaps = 8/90 (8%)
Query: 226 INGMTFSSCLLQHRHWVIHAYNVVLSDVSGEAVIGMSCTPLPGSSGS-VRGSLMFVPA-- 282
I + + L R+W+I N ++V GE V+G+ PG G+++ P
Sbjct: 35 IRNLGRAPVQLLGRYWLITNGNGRETEVQGEGVVGVQPLIAPGEEYQYTSGAIIETPLGT 94
Query: 283 -----RLADPKGSPFEVEVAEFPLQQPDYI 307
+ D G PF +++ F L P I
Sbjct: 95 MQGHYEMIDENGVPFSIDIPVFRLAVPTLI 124
>sp|Q0T8E5|APAG_SHIF8 Protein ApaG OS=Shigella flexneri serotype 5b (strain 8401) GN=apaG
PE=3 SV=1
Length = 125
Score = 31.6 bits (70), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 38/90 (42%), Gaps = 8/90 (8%)
Query: 226 INGMTFSSCLLQHRHWVIHAYNVVLSDVSGEAVIGMSCTPLPGSSGS-VRGSLMFVPA-- 282
I + + L R+W+I N ++V GE V+G+ PG G+++ P
Sbjct: 35 IRNLGRAPVQLLGRYWLITNGNGRETEVQGEGVVGVQPLIAPGEEYQYTSGAIIETPLGT 94
Query: 283 -----RLADPKGSPFEVEVAEFPLQQPDYI 307
+ D G PF +++ F L P I
Sbjct: 95 MQGHYEMIDENGVPFSIDIPVFRLAVPTLI 124
>sp|Q32K44|APAG_SHIDS Protein ApaG OS=Shigella dysenteriae serotype 1 (strain Sd197)
GN=apaG PE=3 SV=1
Length = 125
Score = 31.6 bits (70), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 38/90 (42%), Gaps = 8/90 (8%)
Query: 226 INGMTFSSCLLQHRHWVIHAYNVVLSDVSGEAVIGMSCTPLPGSSGS-VRGSLMFVPA-- 282
I + + L R+W+I N ++V GE V+G+ PG G+++ P
Sbjct: 35 IRNLGRAPVQLLGRYWLITNGNGRETEVQGEGVVGVQPLIAPGEEYQYTSGAIIETPLGT 94
Query: 283 -----RLADPKGSPFEVEVAEFPLQQPDYI 307
+ D G PF +++ F L P I
Sbjct: 95 MQGHYEMIDENGVPFSIDIPVFRLAVPTLI 124
>sp|Q326I3|APAG_SHIBS Protein ApaG OS=Shigella boydii serotype 4 (strain Sb227) GN=apaG
PE=3 SV=1
Length = 125
Score = 31.6 bits (70), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 38/90 (42%), Gaps = 8/90 (8%)
Query: 226 INGMTFSSCLLQHRHWVIHAYNVVLSDVSGEAVIGMSCTPLPGSSGS-VRGSLMFVPA-- 282
I + + L R+W+I N ++V GE V+G+ PG G+++ P
Sbjct: 35 IRNLGRAPVQLLGRYWLITNGNGRETEVQGEGVVGVQPLIAPGEEYQYTSGAIIETPLGT 94
Query: 283 -----RLADPKGSPFEVEVAEFPLQQPDYI 307
+ D G PF +++ F L P I
Sbjct: 95 MQGHYEMIDENGVPFSIDIPVFRLAVPTLI 124
>sp|B2U258|APAG_SHIB3 Protein ApaG OS=Shigella boydii serotype 18 (strain CDC 3083-94 /
BS512) GN=apaG PE=3 SV=1
Length = 125
Score = 31.6 bits (70), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 38/90 (42%), Gaps = 8/90 (8%)
Query: 226 INGMTFSSCLLQHRHWVIHAYNVVLSDVSGEAVIGMSCTPLPGSSGS-VRGSLMFVPA-- 282
I + + L R+W+I N ++V GE V+G+ PG G+++ P
Sbjct: 35 IRNLGRAPVQLLGRYWLITNGNGRETEVQGEGVVGVQPLIAPGEEYQYTSGAIIETPLGT 94
Query: 283 -----RLADPKGSPFEVEVAEFPLQQPDYI 307
+ D G PF +++ F L P I
Sbjct: 95 MQGHYEMIDENGVPFSIDIPVFRLAVPTLI 124
>sp|B7LVU4|APAG_ESCF3 Protein ApaG OS=Escherichia fergusonii (strain ATCC 35469 / DSM
13698 / CDC 0568-73) GN=apaG PE=3 SV=1
Length = 125
Score = 31.6 bits (70), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 38/90 (42%), Gaps = 8/90 (8%)
Query: 226 INGMTFSSCLLQHRHWVIHAYNVVLSDVSGEAVIGMSCTPLPGSSGS-VRGSLMFVPA-- 282
I + + L R+W+I N ++V GE V+G+ PG G+++ P
Sbjct: 35 IRNLGRAPVQLLGRYWLITNGNGRETEVQGEGVVGVQPLIAPGEEYQYTSGAIIETPLGT 94
Query: 283 -----RLADPKGSPFEVEVAEFPLQQPDYI 307
+ D G PF +++ F L P I
Sbjct: 95 MQGHYEMIDENGVPFSIDIPVFRLAVPTLI 124
>sp|Q1RGE7|APAG_ECOUT Protein ApaG OS=Escherichia coli (strain UTI89 / UPEC) GN=apaG PE=3
SV=1
Length = 125
Score = 31.6 bits (70), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 38/90 (42%), Gaps = 8/90 (8%)
Query: 226 INGMTFSSCLLQHRHWVIHAYNVVLSDVSGEAVIGMSCTPLPGSSGS-VRGSLMFVPA-- 282
I + + L R+W+I N ++V GE V+G+ PG G+++ P
Sbjct: 35 IRNLGRAPVQLLGRYWLITNGNGRETEVQGEGVVGVQPLIAPGEEYQYTSGAIIETPLGT 94
Query: 283 -----RLADPKGSPFEVEVAEFPLQQPDYI 307
+ D G PF +++ F L P I
Sbjct: 95 MQGHYEMIDENGVPFSIDIPVFRLAVPTLI 124
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.323 0.139 0.437
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 122,377,167
Number of Sequences: 539616
Number of extensions: 5199624
Number of successful extensions: 11420
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 56
Number of HSP's that attempted gapping in prelim test: 11386
Number of HSP's gapped (non-prelim): 75
length of query: 308
length of database: 191,569,459
effective HSP length: 117
effective length of query: 191
effective length of database: 128,434,387
effective search space: 24530967917
effective search space used: 24530967917
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 61 (28.1 bits)