Query 046173
Match_columns 308
No_of_seqs 255 out of 759
Neff 5.8
Searched_HMMs 46136
Date Fri Mar 29 09:24:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046173.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/046173hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4408 Putative Mg2+ and Co2+ 100.0 1E-43 2.2E-48 334.8 7.4 267 6-306 80-375 (386)
2 COG2967 ApaG Uncharacterized p 100.0 1.1E-34 2.4E-39 237.6 10.8 100 202-307 2-125 (126)
3 PRK05461 apaG CO2+/MG2+ efflux 100.0 4.8E-34 1E-38 240.0 12.2 99 201-307 2-126 (127)
4 PF04379 DUF525: Protein of un 99.8 1E-21 2.2E-26 156.3 5.3 55 226-280 20-87 (90)
5 COG4282 SMI1 Protein involved 99.6 5.1E-16 1.1E-20 134.8 8.8 90 5-114 2-91 (191)
6 PF09346 SMI1_KNR4: SMI1 / KNR 98.3 5.4E-07 1.2E-11 72.5 3.6 34 35-68 1-34 (130)
7 smart00860 SMI1_KNR4 SMI1 / KN 98.2 1.6E-06 3.4E-11 68.1 3.8 35 35-69 1-35 (129)
8 PF14567 SUKH_5: SMI1-KNR4 cel 97.5 0.00048 1E-08 58.7 8.3 91 34-148 20-110 (132)
9 PF14568 SUKH_6: SMI1-KNR4 cel 97.2 0.00021 4.5E-09 57.5 2.7 31 38-68 1-31 (120)
10 PF07348 Syd: Syd protein (SUK 63.2 20 0.00044 32.1 5.9 89 38-147 56-153 (176)
11 PF00379 Chitin_bind_4: Insect 55.7 21 0.00045 25.0 3.8 23 268-295 22-44 (52)
12 PRK12449 acyl carrier protein; 48.0 43 0.00093 25.1 4.8 46 11-56 4-61 (80)
13 PF11611 DUF4352: Domain of un 46.3 1.3E+02 0.0028 23.8 7.7 90 203-299 7-116 (123)
14 PHA02688 ORF059 IMV protein VP 43.9 17 0.00038 35.4 2.4 25 11-35 253-277 (323)
15 PRK04968 SecY interacting prot 43.0 1.2E+02 0.0026 27.4 7.5 26 37-62 56-81 (181)
16 PF05597 Phasin: Poly(hydroxya 42.8 47 0.001 28.3 4.6 40 8-48 79-118 (132)
17 KOG0037 Ca2+-binding protein, 42.2 71 0.0015 29.7 6.0 52 7-60 113-165 (221)
18 PF07494 Reg_prop: Two compone 41.1 24 0.00051 20.9 1.9 16 135-150 9-24 (24)
19 PF03213 Pox_P35: Poxvirus P35 39.7 20 0.00043 35.0 2.1 24 12-35 256-279 (325)
20 TIGR00517 acyl_carrier acyl ca 39.1 56 0.0012 24.2 4.1 46 11-56 2-59 (77)
21 KOG4408 Putative Mg2+ and Co2+ 37.3 25 0.00054 34.8 2.4 23 286-308 362-384 (386)
22 CHL00124 acpP acyl carrier pro 34.3 1E+02 0.0022 23.1 4.9 46 11-56 4-61 (82)
23 PRK05350 acyl carrier protein; 34.2 89 0.0019 23.7 4.6 45 11-55 5-61 (82)
24 PRK03643 altronate oxidoreduct 34.1 59 0.0013 33.4 4.6 43 9-51 185-233 (471)
25 PRK05828 acyl carrier protein; 32.1 94 0.002 24.2 4.5 46 11-56 4-61 (84)
26 PF12385 Peptidase_C70: Papain 30.8 26 0.00057 31.0 1.3 61 1-63 34-108 (166)
27 PF08060 NOSIC: NOSIC (NUC001) 29.8 50 0.0011 23.5 2.4 26 8-33 14-39 (53)
28 PF11829 DUF3349: Protein of u 28.9 1.1E+02 0.0023 24.9 4.4 39 10-48 1-48 (96)
29 COG1274 PckA Phosphoenolpyruva 28.2 3E+02 0.0064 29.0 8.3 100 94-201 101-216 (608)
30 COG0246 MtlD Mannitol-1-phosph 27.5 95 0.0021 32.0 4.8 47 7-53 186-236 (473)
31 TIGR01837 PHA_granule_1 poly(h 26.1 1.2E+02 0.0027 25.1 4.4 37 11-48 69-105 (118)
32 smart00431 SCAN leucine rich r 25.1 1.5E+02 0.0032 24.7 4.7 48 6-64 19-69 (113)
33 PF10691 DUF2497: Protein of u 24.9 42 0.00091 25.8 1.3 16 16-31 46-61 (73)
34 PTZ00171 acyl carrier protein; 24.6 1.4E+02 0.0029 26.0 4.6 45 11-55 69-125 (148)
35 PRK07117 acyl carrier protein; 23.3 2E+02 0.0042 22.1 4.8 46 11-56 4-61 (79)
36 PF11239 DUF3040: Protein of u 22.3 89 0.0019 24.0 2.7 24 11-34 8-31 (82)
37 TIGR01159 DRP1 density-regulat 21.0 67 0.0015 28.7 2.0 22 13-34 22-43 (173)
38 PF10076 DUF2313: Uncharacteri 20.3 1.6E+02 0.0034 25.7 4.2 37 9-53 30-66 (179)
No 1
>KOG4408 consensus Putative Mg2+ and Co2+ transporter CorD [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1e-43 Score=334.85 Aligned_cols=267 Identities=25% Similarity=0.370 Sum_probs=206.3
Q ss_pred ChHHHHHHHHH-HHHHHHHhChhhHhhcCCCCCHHHHHHHHHHcCCCCCHHHHHhhhhhCCcccccCCcccccccccccc
Q 046173 6 FYDDVKRHWDR-FKKWLTENFPEAKATLRKGASEADIQELEKSLKVKLPVPTRILYRFCDGQECQTDDFESIGSMGLIGG 84 (308)
Q Consensus 6 ~~~~v~~~W~r-Ie~wL~~~~P~~~~~L~~gate~~I~~~E~~Lg~~LP~d~r~lyr~hnGQ~~~~~~~~~~~~~GLigG 84 (308)
.+.+|.-.|.- ++.|...|.|+.-++|++||+|+|++++|+.+|++||.++|++||.||||... .+|++++
T Consensus 80 yvgvv~~~w~arlk~wd~ln~~~~~aal~ega~e~dl~a~e~s~~~kLp~~~r~~yrev~Gq~l~--------~yqvLi~ 151 (386)
T KOG4408|consen 80 YVGVVLFPWAARLKDWDDLNKYLEPAALKEGAREPDLDAVEASIGCKLPDDYRCSYREVKGQTLT--------FYQVLID 151 (386)
T ss_pred cceEEEEechHhhhhhhhcccccccchhhccCcccchhhhhhcccccCCCccccchhhcCCeEEe--------ehheeee
Confidence 34455666876 89999999999999999999999999999999999999999999999999986 7899999
Q ss_pred eecccceeeeeccchhHHHHHHHHHHHHhCCCCCCceEEEeecCCCcceeEEEeccCCcEEEeeeeccCCCceeecCCcc
Q 046173 85 YSFYGHLVNVYLIPLSHIIMETKEIRRQLHFPGRDKYVVLASSSTYSEKFFFLNCTNGQLYVGTKNLLSDGEIIPCVPNA 164 (308)
Q Consensus 85 ~~~y~~~~n~~LLpL~~i~~~~~~~r~~~~~~~~~~~~~~aass~~~~k~~~l~~~~G~l~vgt~~~~~~g~~~pc~p~~ 164 (308)
+..|+|.+ .++..++...- .+++.+...+..+++-.+..+-.+|.|+.++..-|+ . |.++|.|++
T Consensus 152 ~~d~sH~~-------~ev~~e~~t~~--~nf~~r~~L~y~ipgld~v~hedilpyts~e~~~g~-----h-eLf~~~pdl 216 (386)
T KOG4408|consen 152 MRDCSHIR-------SEVQTEAVTFL--GNFDSRQGLKYAIPGLDYVSHEDILPYTSSEAVPGQ-----H-ELFDQFPDL 216 (386)
T ss_pred cccCcccc-------chhhhhhhhhh--cCcccccchheecccceeEeeccccccccccccccc-----h-hhhhhhhhh
Confidence 99999977 23333322211 244433333333333335557889999988866554 2 789999985
Q ss_pred ccccCCCCCcccccccc--ccc-cccceeeecCCCCCcccccccCCcEEEEEeEE----ccCCCCcce------ecC-CC
Q 046173 165 LISLGHSFNSDQQQDLC--CYE-ENFKFINLFPEEPSHCSIAVTNGMNTCLRIQF----TSLLPEGCI------ING-MT 230 (308)
Q Consensus 165 ~i~~~~~~~~~~~~d~~--w~~-~~~~~i~l~P~~~~~~s~~~T~gI~V~v~~~y----~s~~p~~~~------i~n-~~ 230 (308)
+..++ +.+....||+| |.+ ++... +|.. -...++|+||+|+|+++| ++..|.++. |+| ..
T Consensus 217 ~r~~~-~~~~f~~q~tl~~W~e~kn~gw---l~~~--dVh~etTenI~Vtvstfylge~s~~~pp~YwwrY~IRien~l~ 290 (386)
T KOG4408|consen 217 ARDPA-AIPPFVIQDTLTAWQESKNHGW---LPIR--DVHRETTENIRVTVSTFYLGERSSVHPPVYWWRYCIRIENALP 290 (386)
T ss_pred hcCcc-cCCchhhhHHHHHHHhcCCCCC---cChh--hCChhhcCCeEEEEEEeeecccccCCCCceEEEEEEEeecCCC
Confidence 55554 44667788999 965 44333 2222 134589999999999999 444454443 899 89
Q ss_pred CCcEEEecceEEEEeCCCceEEEEcCeeeee--------------cCccccCCeeEEEEEEEEEecccCCCCCCcEEEEe
Q 046173 231 FSSCLLQHRHWVIHAYNVVLSDVSGEAVIGM--------------SCTPLPGSSGSVRGSLMFVPARLADPKGSPFEVEV 296 (308)
Q Consensus 231 ~~~vqL~sRhW~I~d~~g~~~eV~G~GVVG~--------------S~~~l~t~~G~M~G~y~~~p~~l~~~~g~~F~v~I 296 (308)
..+|||.+|||+|+..||.+++|+|+||||+ ||++|+|++|+|+|.|.|. +++|..|+|.|
T Consensus 291 e~svQLreRhWrI~slng~le~V~G~gVVGk~PiLs~g~paFqYsSc~sl~ttsGhMwGtF~fe-----r~~G~lfDvki 365 (386)
T KOG4408|consen 291 EKSVQLRERHWRIFSLNGTLETVRGRGVVGKEPILSAGRPAFQYSSCVSLQTTSGHMWGTFRFE-----REDGSLFDVKI 365 (386)
T ss_pred CcceEEeEeeEEEEecccchhhccccceeccccccCCCCcceEEeeeeeeccCCccceeeEEEE-----ecCCccccccC
Confidence 9999999999999999999999999999998 9999999999999988777 66778888888
Q ss_pred cCccCCCCCC
Q 046173 297 AEFPLQQPDY 306 (308)
Q Consensus 297 p~F~L~~P~~ 306 (308)
|+|.|.+|.+
T Consensus 366 p~F~~es~ef 375 (386)
T KOG4408|consen 366 PPFSLESPEF 375 (386)
T ss_pred CceEeecccc
Confidence 7777766543
No 2
>COG2967 ApaG Uncharacterized protein affecting Mg2+/Co2+ transport [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.1e-34 Score=237.59 Aligned_cols=100 Identities=28% Similarity=0.514 Sum_probs=91.4
Q ss_pred ccccCCcEEEEEeEE---ccCCCCc--ce------ecCCCCCcEEEecceEEEEeCCCceEEEEcCeeeee---------
Q 046173 202 IAVTNGMNTCLRIQF---TSLLPEG--CI------INGMTFSSCLLQHRHWVIHAYNVVLSDVSGEAVIGM--------- 261 (308)
Q Consensus 202 ~~~T~gI~V~v~~~y---~s~~p~~--~~------i~n~~~~~vqL~sRhW~I~d~~g~~~eV~G~GVVG~--------- 261 (308)
.+.|..|+|+|++.| +|. |++ +. |+|.++.+|||++|||.|||+||+++||+|+||||+
T Consensus 2 ~~~~~~I~V~V~~~yleeQS~-P~~~RyvfaYtitI~N~g~~~vqLlsR~W~ITd~~g~v~eV~G~GVVGeQP~l~PG~~ 80 (126)
T COG2967 2 MASSPDIEVQVQPRYLEEQSS-PEEERYVFAYTVTIRNLGEVPVQLLSRYWLITDGNGRVTEVEGEGVVGEQPLLAPGEE 80 (126)
T ss_pred CcccCceEEEEeeEEccccCC-cccceEEEEEEEEEecCCCccceeeeeEEEEecCCCcEEEEEcCceeccccccCCCCc
Confidence 367899999999999 443 331 21 999999999999999999999999999999999998
Q ss_pred ----cCccccCCeeEEEEEEEEEecccCCCCCCcEEEEecCccCCCCCCC
Q 046173 262 ----SCTPLPGSSGSVRGSLMFVPARLADPKGSPFEVEVAEFPLQQPDYI 307 (308)
Q Consensus 262 ----S~~~l~t~~G~M~G~y~~~p~~l~~~~g~~F~v~Ip~F~L~~P~~i 307 (308)
|||+|+||+|.|+|+|.|+ +++|+.|+|.||+|+|++|..+
T Consensus 81 y~YtSg~~l~Tp~G~M~GhY~M~-----~e~G~~F~v~Ip~F~L~vP~~~ 125 (126)
T COG2967 81 YQYTSGCPLDTPSGTMQGHYEMI-----DEDGETFDVAIPVFRLAVPGLL 125 (126)
T ss_pred eEEcCCcCccCCcceEEEEEEEe-----cCCCcEEEeecCceEecCcccc
Confidence 9999999999999999999 8999999999999999999865
No 3
>PRK05461 apaG CO2+/MG2+ efflux protein ApaG; Reviewed
Probab=100.00 E-value=4.8e-34 Score=239.98 Aligned_cols=99 Identities=32% Similarity=0.536 Sum_probs=91.7
Q ss_pred cccccCCcEEEEEeEEccCCCCcc-------e------ecCCCCCcEEEecceEEEEeCCCceEEEEcCeeeee------
Q 046173 201 SIAVTNGMNTCLRIQFTSLLPEGC-------I------INGMTFSSCLLQHRHWVIHAYNVVLSDVSGEAVIGM------ 261 (308)
Q Consensus 201 s~~~T~gI~V~v~~~y~s~~p~~~-------~------i~n~~~~~vqL~sRhW~I~d~~g~~~eV~G~GVVG~------ 261 (308)
.+++|+||+|+|++.| +|+++ + |+|.++.+|||++|||+|+|++|++++|+|+||||+
T Consensus 2 ~~~~t~gI~V~V~~~y---~~e~S~p~~~~y~f~Y~ItI~N~~~~~vQL~~R~W~I~d~~g~~~~V~G~GVVG~qP~L~P 78 (127)
T PRK05461 2 YSAVTYGIEVSVQPRY---LEEQSDPEEGRYVFAYTITIENLGRVPVQLLSRHWLITDANGRVQEVRGEGVVGEQPVLAP 78 (127)
T ss_pred cccccCCEEEEEEEEE---CcccCCCcCCEEEEEEEEEEEECCCCCEEEEeeeEEEEECCCCEEEEECCceecCCceECC
Confidence 4678999999999999 44433 1 999999999999999999999999999999999998
Q ss_pred -------cCccccCCeeEEEEEEEEEecccCCCCCCcEEEEecCccCCCCCCC
Q 046173 262 -------SCTPLPGSSGSVRGSLMFVPARLADPKGSPFEVEVAEFPLQQPDYI 307 (308)
Q Consensus 262 -------S~~~l~t~~G~M~G~y~~~p~~l~~~~g~~F~v~Ip~F~L~~P~~i 307 (308)
|||+|+||.|+|+|+|+|+ +++|+.|+|.||+|+|.+|..|
T Consensus 79 Ge~F~Y~S~~~l~tp~G~M~G~y~~~-----~~~G~~F~v~Ip~F~L~~P~~l 126 (127)
T PRK05461 79 GESFEYTSGAVLETPSGTMQGHYQMV-----DEDGERFEVPIPPFRLAVPRTL 126 (127)
T ss_pred CCCeEEeCCCCccCCCEEEEEEEEEE-----eCCCCEEEEEccCEEcCCCccC
Confidence 9999999999999999999 7899999999999999999754
No 4
>PF04379 DUF525: Protein of unknown function (DUF525); InterPro: IPR007474 This domain is found in the bacterial protein ApaG and at the C termini of some F-box proteins (IPR001810 from INTERPRO). F-box proteins contain a carboxy-terminal domain that interacts with protein substrates []. The ApaG domain is ~125 amino acids in length, and is named after the bacterial ApaG protein, of which it forms the core. The Salmonella typhimurium ApaG domain protein, CorD, is involved in Co(2+) resistance and Mg(2+) efflux. Tertiary structures from different ApaG proteins show a fold of several beta-sheets. The ApaG domain may be involved in protein-protein interactions which could be implicated in substrate-specificity [, , ].; PDB: 2F1E_A 1XVS_A 1TZA_A 1XQ4_D.
Probab=99.84 E-value=1e-21 Score=156.28 Aligned_cols=55 Identities=38% Similarity=0.597 Sum_probs=51.4
Q ss_pred ecCCCCCcEEEecceEEEEeCCCceEEEEcCeeeee-------------cCccccCCeeEEEEEEEEE
Q 046173 226 INGMTFSSCLLQHRHWVIHAYNVVLSDVSGEAVIGM-------------SCTPLPGSSGSVRGSLMFV 280 (308)
Q Consensus 226 i~n~~~~~vqL~sRhW~I~d~~g~~~eV~G~GVVG~-------------S~~~l~t~~G~M~G~y~~~ 280 (308)
|+|.+..+|||++|||+|+|++|++++|+|+||||+ |||+|+||.|+|+|+|+|+
T Consensus 20 I~N~~~~~vqL~sR~W~I~d~~g~~~~V~G~GVVG~~P~L~pGe~f~Y~S~~~l~t~~G~M~G~y~~~ 87 (90)
T PF04379_consen 20 IENHSDESVQLLSRHWIITDADGHVEEVEGEGVVGQQPVLAPGESFEYTSGCPLSTPSGSMEGSYTMV 87 (90)
T ss_dssp EEE-SSS-EEEEEEEEEEEETTS-EEEEEEESBTTB--EE-TTEEEEEEEEEEESSSEEEEEEEEEEE
T ss_pred EEECCCCCEEEEccEEEEEeCCCCEEEEECCceEccCceECCCCcEEEcCCCCcCCCCEEEEEEEEEE
Confidence 999999999999999999999999999999999998 9999999999999999998
No 5
>COG4282 SMI1 Protein involved in beta-1,3-glucan synthesis [Carbohydrate transport and metabolism]
Probab=99.64 E-value=5.1e-16 Score=134.80 Aligned_cols=90 Identities=28% Similarity=0.400 Sum_probs=79.4
Q ss_pred CChHHHHHHHHHHHHHHHHhChhhHhhcCCCCCHHHHHHHHHHcCCCCCHHHHHhhhhhCCcccccCCcccccccccccc
Q 046173 5 DFYDDVKRHWDRFKKWLTENFPEAKATLRKGASEADIQELEKSLKVKLPVPTRILYRFCDGQECQTDDFESIGSMGLIGG 84 (308)
Q Consensus 5 ~~~~~v~~~W~rIe~wL~~~~P~~~~~L~~gate~~I~~~E~~Lg~~LP~d~r~lyr~hnGQ~~~~~~~~~~~~~GLigG 84 (308)
+....+..+|+||+.|.++|.|+....|+||||.++|+.+|++||++||+|+|++|.+||||...+. ..|
T Consensus 2 ~~~se~slawrrId~W~aeh~pdl~~~l~pgat~~di~~aE~dlg~tlPpdvResl~iHDGq~dgs~------ptg---- 71 (191)
T COG4282 2 PNQSEPSLAWRRIDTWVAEHHPDLLPFLRPGATCGDIQRAEADLGRTLPPDVRESLAIHDGQPDGSP------PTG---- 71 (191)
T ss_pred CCCchHHHHHHHHHHHHHhcCcccccccCCCccHHHHHHHHHHhcCcCChHHHHHHHhhCCCcCCCC------ccc----
Confidence 4567788999999999999999999999999999999999999999999999999999999997631 222
Q ss_pred eecccceeeeeccchhHHHHHHHHHHHHhC
Q 046173 85 YSFYGHLVNVYLIPLSHIIMETKEIRRQLH 114 (308)
Q Consensus 85 ~~~y~~~~n~~LLpL~~i~~~~~~~r~~~~ 114 (308)
.||.|+++..+++-||+...
T Consensus 72 ----------~ll~le~~~~~~~aWrdlaq 91 (191)
T COG4282 72 ----------LLLRLEPLDLELIAWRDLAQ 91 (191)
T ss_pred ----------chhhhHHHHHHHHHHHHHHH
Confidence 57888999988888888653
No 6
>PF09346 SMI1_KNR4: SMI1 / KNR4 family (SUKH-1); InterPro: IPR018958 Proteins in this family are involved in the regulation of 1,3-beta-glucan synthase activity and cell-wall formation [, ]. Yeast members of this family are involved in the regulation of cell wall assembly. Saccharomyces cerevisiae (Baker's yeast) protein KNR4 (SMI1) has a regulatory role in chitin deposition and in cell wall assembly []. It was originally identified as a regulator of chitin synthase expression (acting as a repressor) [] and of 1,3-beta-glucan synthase levels []. It was shown to localise in patches at presumptive bud sites in unbudded cells and at the incipient bud site during bud emergence []. KNR4 is believed to connect the PKC1-SLT2 MAPK pathway with cell proliferation. It has been shown to interact with BCK2, a gene involved in cell cycle progression in S. cerevisiae (forming a complex) to allow PKC1 to coordinate the cell cycle (cell proliferation) with cell wall integrity [, ]. PKC1 plays an essential role in cell wall integrity and cell proliferation through a bifurcated PKC1/mitogen-activated protein (MAP) kinase pathway. KNR4 also interacts with the tyrosine-tRNA synthetase protein encoded by TYS1 and is involved in sporulation process []. Note: previously reported evidence that KNR4 may interact with nuclear matrix-association region [] may be due to an artefact [].; PDB: 3D5P_A 2ICG_A.
Probab=98.30 E-value=5.4e-07 Score=72.55 Aligned_cols=34 Identities=32% Similarity=0.414 Sum_probs=20.9
Q ss_pred CCCHHHHHHHHHHcCCCCCHHHHHhhhhhCCccc
Q 046173 35 GASEADIQELEKSLKVKLPVPTRILYRFCDGQEC 68 (308)
Q Consensus 35 gate~~I~~~E~~Lg~~LP~d~r~lyr~hnGQ~~ 68 (308)
|||+++|+++|+.||++||++||+||+.|++...
T Consensus 1 p~t~~~I~~~E~~lg~~LP~~yk~fl~~~~~~~~ 34 (130)
T PF09346_consen 1 PATEEEIQELEEKLGVRLPDDYKEFLKEHNNGGI 34 (130)
T ss_dssp ---HHHHHHHHHHHTS---HHHHHHHH-------
T ss_pred CCCHHHHHHHHHHhCCCCcHHHHHHHHhhccccc
Confidence 7899999999999999999999999998744443
No 7
>smart00860 SMI1_KNR4 SMI1 / KNR4 family. Proteins in this family are involved in the regulation of 1,3-beta-glucan synthase activity and cell-wall formation.
Probab=98.18 E-value=1.6e-06 Score=68.09 Aligned_cols=35 Identities=40% Similarity=0.508 Sum_probs=33.2
Q ss_pred CCCHHHHHHHHHHcCCCCCHHHHHhhhhhCCcccc
Q 046173 35 GASEADIQELEKSLKVKLPVPTRILYRFCDGQECQ 69 (308)
Q Consensus 35 gate~~I~~~E~~Lg~~LP~d~r~lyr~hnGQ~~~ 69 (308)
|+|+++|+++|+.||++||++||+||+.|||....
T Consensus 1 ~~s~~~i~~~e~~lg~~LP~~y~~f~~~~~g~~~~ 35 (129)
T smart00860 1 PASEEEIAELEKKLGIKLPEDYKEFLLLHNGGELG 35 (129)
T ss_pred CCCHHHHHHHHHHHCCCCCHHHHHHHHHcCCEEeC
Confidence 68999999999999999999999999999998765
No 8
>PF14567 SUKH_5: SMI1-KNR4 cell-wall; PDB: 2PAG_A.
Probab=97.52 E-value=0.00048 Score=58.71 Aligned_cols=91 Identities=15% Similarity=0.220 Sum_probs=46.6
Q ss_pred CCCCHHHHHHHHHHcCCCCCHHHHHhhhhhCCcccccCCcccccccccccceecccceeeeeccchhHHHHHHHHHHHHh
Q 046173 34 KGASEADIQELEKSLKVKLPVPTRILYRFCDGQECQTDDFESIGSMGLIGGYSFYGHLVNVYLIPLSHIIMETKEIRRQL 113 (308)
Q Consensus 34 ~gate~~I~~~E~~Lg~~LP~d~r~lyr~hnGQ~~~~~~~~~~~~~GLigG~~~y~~~~n~~LLpL~~i~~~~~~~r~~~ 113 (308)
.++++++|.++|+.||++||++||++++...+-.. |++.-+.- +..--++. +.+.++..|+ .
T Consensus 20 ~lpd~e~I~~~Ee~L~i~lP~eyk~fL~~~s~v~~--------------G~~E~~~i--~~~~s~~~-l~e~~~~ar~-~ 81 (132)
T PF14567_consen 20 ELPDDEQIVEAEEQLGISLPEEYKEFLLEASDVIY--------------GGLEPVGI--GDPPSHTY-LPEVTADARS-I 81 (132)
T ss_dssp ----HHHHHHHHHHHT----HHHHHHHHHHTT--B--------------TTB-B-BS--S-TTSTTB-HHHHHHHHHH-H
T ss_pred CCCCHHHHHHHHHHHCCCCCHHHHHHHHHCCCeee--------------cceEEEEE--EcCCCccc-HHHHHHHHHH-c
Confidence 35799999999999999999999999998654433 33222110 01111112 5666677777 6
Q ss_pred CCCCCCceEEEeecCCCcceeEEEeccCCcEEEee
Q 046173 114 HFPGRDKYVVLASSSTYSEKFFFLNCTNGQLYVGT 148 (308)
Q Consensus 114 ~~~~~~~~~~~aass~~~~k~~~l~~~~G~l~vgt 148 (308)
+++ ..+++++.. ++-|+.|+ .+|+|..+.
T Consensus 82 glP--~~~ipice~---~~~yYcl~-~~g~V~~W~ 110 (132)
T PF14567_consen 82 GLP--RELIPICED---GGDYYCLD-QEGEVVYWS 110 (132)
T ss_dssp T----TTSEEEEEE---TTEEEEE--TTS-EEEE-
T ss_pred CCC--hhheeEEec---CCcEEEEe-CCCeEEEec
Confidence 665 236666554 34566777 678865553
No 9
>PF14568 SUKH_6: SMI1-KNR4 cell-wall; PDB: 2PRV_A.
Probab=97.23 E-value=0.00021 Score=57.50 Aligned_cols=31 Identities=35% Similarity=0.458 Sum_probs=24.4
Q ss_pred HHHHHHHHHHcCCCCCHHHHHhhhhhCCccc
Q 046173 38 EADIQELEKSLKVKLPVPTRILYRFCDGQEC 68 (308)
Q Consensus 38 e~~I~~~E~~Lg~~LP~d~r~lyr~hnGQ~~ 68 (308)
|++|+.+|+.||++||.+||.+++.+||-..
T Consensus 1 ee~I~~~E~~Lg~~lP~~Yk~fL~~~~gg~~ 31 (120)
T PF14568_consen 1 EEEIEEAEKKLGVKLPEDYKEFLKEYNGGYF 31 (120)
T ss_dssp -HHHHHHHHHHTS---HHHHHHHHHC-SEEE
T ss_pred ChHHHHHHHHhCCCCCHHHHHHHHHcCCEEE
Confidence 6899999999999999999999999999764
No 10
>PF07348 Syd: Syd protein (SUKH-2); InterPro: IPR009948 This family contains a number of bacterial Syd proteins approximately 180 residues long. It has been suggested that Syd is loosely associated with the cytoplasmic surface of the cytoplasmic membrane, and that interaction with SecY may be involved in this membrane association [].; GO: 0009898 internal side of plasma membrane; PDB: 3FFV_B.
Probab=63.18 E-value=20 Score=32.06 Aligned_cols=89 Identities=16% Similarity=0.294 Sum_probs=42.7
Q ss_pred HHHHHHHHHHcCCCCCHHHHHhhhhhCCcccccCCcccccccccccceecccceeeeeccc---------hhHHHHHHHH
Q 046173 38 EADIQELEKSLKVKLPVPTRILYRFCDGQECQTDDFESIGSMGLIGGYSFYGHLVNVYLIP---------LSHIIMETKE 108 (308)
Q Consensus 38 e~~I~~~E~~Lg~~LP~d~r~lyr~hnGQ~~~~~~~~~~~~~GLigG~~~y~~~~n~~LLp---------L~~i~~~~~~ 108 (308)
..++..+|++|+++|.+|++++|-- -.. +.-.+-++|+. ..||. |.|-+.....
T Consensus 56 ~~~f~~vE~aLei~lh~~i~~fy~~----~~~------~dm~a~~~~~~-------l~LlqvW~e~Df~rLQeNliGHl~ 118 (176)
T PF07348_consen 56 AADFSNVERALEIQLHPDIHAFYGS----YFS------GDMPASFGGGE-------LELLQVWNEDDFERLQENLIGHLV 118 (176)
T ss_dssp -SS-HHHHHHCT----HHHHHHCCS----EE---------EEEEETTEE-------EEE----SHHHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHhCCcccHHHHHHHhh----hhc------cCcceEeCCce-------EEEEecCCcccHHHHHHHHHHHHH
Confidence 3478999999999999999999943 211 22334444432 33432 3333333444
Q ss_pred HHHHhCCCCCCceEEEeecCCCcceeEEEeccCCcEEEe
Q 046173 109 IRRQLHFPGRDKYVVLASSSTYSEKFFFLNCTNGQLYVG 147 (308)
Q Consensus 109 ~r~~~~~~~~~~~~~~aass~~~~k~~~l~~~~G~l~vg 147 (308)
+++++...+ -+.++... -.+..+-++-.+|+|+.-
T Consensus 119 mkrrLKq~p---T~FIg~t~-~e~~lisv~N~sGeV~LE 153 (176)
T PF07348_consen 119 MKRRLKQPP---TLFIGTTD-SEDMLISVDNESGEVILE 153 (176)
T ss_dssp HHHHTT------EEEEEEES-STTEEEEEETTT--EEEE
T ss_pred HHHhhccCC---ceeEEEec-CCCcEEEEECCCCeEEEE
Confidence 555555431 23333332 256788888889998654
No 11
>PF00379 Chitin_bind_4: Insect cuticle protein; InterPro: IPR000618 Insect cuticle is composed of proteins and chitin. The cuticular proteins seem to be specific to the type of cuticle (flexible or stiff) that occur at stages of the insect development. The proteins found in the flexible cuticle of larva and pupa of different insects share a conserved C-terminal section [] such a region is also found in the soft endocuticle of adults insects [] as well as in other cuticular proteins including in arachnids []. In addition, cuticular proteins share hydrophobic regions dominated by tetrapeptide repeats (A-A-P-A/V), which are presumed to be functionally important [, ]. Many insect cuticle proteins also include a 35-36 amino acid motif known as the R and R consensus. An extended form of this motif has been shown [] to bind chitin. It has no sequence similiarity to the cysteine-containing chitin-binding domain of chitinases and some peritrophic membrane proteins, suggesting that arthropods have two distinct classes of chitin-binding proteins, those with the chitin-binding domains found in lectins, chitinases and peritrophic membranes (cysCBD), and those with the type of chitin-binding domains found in cuticular proteins (non-cysCBD) []. The cuticle protein signature has been found in locust cuticle proteins 7 (LM-7), 8 (LM-8), 19 (LM-19) and endocuticle structural glycoprotein ABD-4; Hyalophora cecropia (Cecropia moth) cuticle proteins 12 and 66; Drosophila melanogaster (Fruit fly) larval cuticles proteins I, II, III and IV (LCP1 to LCP4); drosophila pupal cuticle proteins PCP, EDG-78E and EDG-84E; Manduca sexta (Tobacco hawkmoth) cuticle protein LCP-14; Tenebrio molitor (Yellow mealworm) cuticle proteins ACP-20, A1A, A2B and A3A; and Araneus diadematus (Spider) cuticle proteins ACP 11.9, ACP 12.4, ACP 12.6, ACP 15.5 and ACP 15.7.; GO: 0042302 structural constituent of cuticle
Probab=55.75 E-value=21 Score=25.02 Aligned_cols=23 Identities=39% Similarity=0.720 Sum_probs=20.2
Q ss_pred CCeeEEEEEEEEEecccCCCCCCcEEEE
Q 046173 268 GSSGSVRGSLMFVPARLADPKGSPFEVE 295 (308)
Q Consensus 268 t~~G~M~G~y~~~p~~l~~~~g~~F~v~ 295 (308)
...|.++|+|.++ +|+|....|.
T Consensus 22 ~~~~~v~GsY~y~-----~pdG~~~~V~ 44 (52)
T PF00379_consen 22 DEGGVVRGSYSYI-----DPDGQTRTVT 44 (52)
T ss_pred CCCCEEEEEEEEE-----CCCCCEEEEE
Confidence 5788999999999 8999988875
No 12
>PRK12449 acyl carrier protein; Provisional
Probab=47.95 E-value=43 Score=25.08 Aligned_cols=46 Identities=9% Similarity=0.182 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHhChhhHhhcCCCCCH-H-----------HHHHHHHHcCCCCCHHH
Q 046173 11 KRHWDRFKKWLTENFPEAKATLRKGASE-A-----------DIQELEKSLKVKLPVPT 56 (308)
Q Consensus 11 ~~~W~rIe~wL~~~~P~~~~~L~~gate-~-----------~I~~~E~~Lg~~LP~d~ 56 (308)
..++++|.+-+++.++.....+.+-.+= + -+.++|..+|+.+|++-
T Consensus 4 ~~i~~~l~~il~~~~~~~~~~i~~~~~l~~dlg~DSl~~~~li~~lE~~f~i~i~~~~ 61 (80)
T PRK12449 4 EEIFERLINLIQKQRSYLSLAITEQTHLKDDLAVDSIELVEFIINVEDEFHIAIPDED 61 (80)
T ss_pred HHHHHHHHHHHHHHhCCCccccCCCCcHHHHcCCcHHHHHHHHHHHHHHhCCCCCHHH
Confidence 4578899999999887655666666655 2 24789999999999764
No 13
>PF11611 DUF4352: Domain of unknown function (DUF4352); InterPro: IPR021652 This entry is represented by Bacteriophage A118, Gp32. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry represents a group of putative lipoproteins of unknown function.; PDB: 3CFU_A.
Probab=46.34 E-value=1.3e+02 Score=23.75 Aligned_cols=90 Identities=12% Similarity=0.111 Sum_probs=47.1
Q ss_pred cccCCcEEEEEeE-E-------ccCCC-Ccce-----ecCCCCCcEEEecceEEEEeCCCceEEEEcCeeeee----cCc
Q 046173 203 AVTNGMNTCLRIQ-F-------TSLLP-EGCI-----INGMTFSSCLLQHRHWVIHAYNVVLSDVSGEAVIGM----SCT 264 (308)
Q Consensus 203 ~~T~gI~V~v~~~-y-------~s~~p-~~~~-----i~n~~~~~vqL~sRhW~I~d~~g~~~eV~G~GVVG~----S~~ 264 (308)
..+.+++|+|..+ + ++..+ ..++ |+|.++.+..+-.-++.+.|.+|..-+..... ... ...
T Consensus 7 ~~~~~~~vtV~~v~~~~~~~~~~~~~~g~~fv~v~v~v~N~~~~~~~~~~~~f~l~d~~g~~~~~~~~~-~~~~~~~~~~ 85 (123)
T PF11611_consen 7 VSVGGIEVTVNSVEKTDGSNEYSKPKEGNKFVVVDVTVKNNGDEPLDFSPSDFKLYDSDGNKYDPDFSA-SSNDNDLFSE 85 (123)
T ss_dssp EEETTEEEEEEEE-EEE-SS-BEES---SEEEEEEEEEEE-SSS-EEEEGGGEEEE-TT--B--EEE-C-CCTTTB--EE
T ss_pred EEECCEEEEEEEEEeecCCccccccCCCCEEEEEEEEEEECCCCcEEecccceEEEeCCCCEEcccccc-hhcccccccc
Confidence 3467888888887 3 11111 1222 99999999999999999999998875533211 111 111
Q ss_pred cccCCeeEEEEEEEEEecccCCCCCCc-EEEEe-cCc
Q 046173 265 PLPGSSGSVRGSLMFVPARLADPKGSP-FEVEV-AEF 299 (308)
Q Consensus 265 ~l~t~~G~M~G~y~~~p~~l~~~~g~~-F~v~I-p~F 299 (308)
.| .|..+.+|...|. -+++.. +.+.+ |.+
T Consensus 86 ~i-~pG~~~~g~l~F~-----vp~~~~~~~l~~~~~~ 116 (123)
T PF11611_consen 86 TI-KPGESVTGKLVFE-----VPKDDKPYTLEYSPDI 116 (123)
T ss_dssp EE--TT-EEEEEEEEE-----ESTT-GG-EEEE-H--
T ss_pred EE-CCCCEEEEEEEEE-----ECCCCccEEEEEecCc
Confidence 22 4666899998886 344443 77766 443
No 14
>PHA02688 ORF059 IMV protein VP55; Provisional
Probab=43.94 E-value=17 Score=35.39 Aligned_cols=25 Identities=24% Similarity=0.598 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHhChhhHhhcCCC
Q 046173 11 KRHWDRFKKWLTENFPEAKATLRKG 35 (308)
Q Consensus 11 ~~~W~rIe~wL~~~~P~~~~~L~~g 35 (308)
..+|.||.+||+.|+|..+..|.-|
T Consensus 253 ~~lwsrl~~Wla~~~P~~~y~lttP 277 (323)
T PHA02688 253 NSLWSRLGTWLAKRYPGFYYFLTTP 277 (323)
T ss_pred hhHHHHHHHHHHhhCCchheeecch
Confidence 4579999999999999988777655
No 15
>PRK04968 SecY interacting protein Syd; Provisional
Probab=43.04 E-value=1.2e+02 Score=27.36 Aligned_cols=26 Identities=19% Similarity=0.436 Sum_probs=23.0
Q ss_pred CHHHHHHHHHHcCCCCCHHHHHhhhh
Q 046173 37 SEADIQELEKSLKVKLPVPTRILYRF 62 (308)
Q Consensus 37 te~~I~~~E~~Lg~~LP~d~r~lyr~ 62 (308)
.+.++..+|+.|+++|.+|.+++|--
T Consensus 56 ~~~~f~~vE~aLei~lh~~I~~fy~s 81 (181)
T PRK04968 56 PEGNFNNVERALEITLHPDIHAFYTT 81 (181)
T ss_pred CcccHHHHHHhhcCeecHHHHHHHhh
Confidence 44588999999999999999999944
No 16
>PF05597 Phasin: Poly(hydroxyalcanoate) granule associated protein (phasin); InterPro: IPR008769 Polyhydroxyalkanoates (PHAs) are storage polyesters synthesised by various bacteria as intracellular carbon and energy reserve material. PHAs are accumulated as water-insoluble inclusions within the cells. This family consists of the phasins PhaF and PhaI which act as a transcriptional regulator of PHA biosynthesis genes. PhaF has been proposed to repress expression of the phaC1 gene and the phaIF operon.
Probab=42.76 E-value=47 Score=28.33 Aligned_cols=40 Identities=20% Similarity=0.416 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHHHHhChhhHhhcCCCCCHHHHHHHHHHc
Q 046173 8 DDVKRHWDRFKKWLTENFPEAKATLRKGASEADIQELEKSL 48 (308)
Q Consensus 8 ~~v~~~W~rIe~wL~~~~P~~~~~L~~gate~~I~~~E~~L 48 (308)
.++...|+++|+-+.+..-.+...|.-| |..||+++++.+
T Consensus 79 ~~~~~~~dklE~~fd~rV~~aL~rLgvP-s~~dv~~L~~rI 118 (132)
T PF05597_consen 79 ERATGQWDKLEQAFDERVARALNRLGVP-SRKDVEALSARI 118 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCC-CHHHHHHHHHHH
Confidence 4678899999999999999999999999 788999988864
No 17
>KOG0037 consensus Ca2+-binding protein, EF-Hand protein superfamily [Signal transduction mechanisms]
Probab=42.18 E-value=71 Score=29.67 Aligned_cols=52 Identities=12% Similarity=0.203 Sum_probs=39.3
Q ss_pred hHHHHHHHHHHHHHHHHhChhhHhhc-CCCCCHHHHHHHHHHcCCCCCHHHHHhh
Q 046173 7 YDDVKRHWDRFKKWLTENFPEAKATL-RKGASEADIQELEKSLKVKLPVPTRILY 60 (308)
Q Consensus 7 ~~~v~~~W~rIe~wL~~~~P~~~~~L-~~gate~~I~~~E~~Lg~~LP~d~r~ly 60 (308)
.+.-+.+|+.|++|-.-.- ..+.= ..-+...||..+=..+|+.||+.+-.++
T Consensus 113 f~EF~~Lw~~i~~Wr~vF~--~~D~D~SG~I~~sEL~~Al~~~Gy~Lspq~~~~l 165 (221)
T KOG0037|consen 113 FKEFKALWKYINQWRNVFR--TYDRDRSGTIDSSELRQALTQLGYRLSPQFYNLL 165 (221)
T ss_pred HHHHHHHHHHHHHHHHHHH--hcccCCCCcccHHHHHHHHHHcCcCCCHHHHHHH
Confidence 5778999999999987642 22222 2335677898888899999999988776
No 18
>PF07494 Reg_prop: Two component regulator propeller; InterPro: IPR011110 A large group of two component regulator proteins appear to have the same N-terminal structure of 14 tandem repeats. These repeats show homology to members of IPR002372 from INTERPRO and IPR001680 from INTERPRO indicating that they are likely to form a beta-propeller. This family has been built with artificially high cut-offs in order to avoid overlaps with other beta-propeller families. The fourteen repeats are likely to form two propellers; it is not clear if these structures are likely to recruit other proteins or interact with DNA.; PDB: 3V9F_D 3VA6_B 3OTT_B 4A2M_D 4A2L_B.
Probab=41.14 E-value=24 Score=20.92 Aligned_cols=16 Identities=31% Similarity=0.603 Sum_probs=11.5
Q ss_pred EEEeccCCcEEEeeee
Q 046173 135 FFLNCTNGQLYVGTKN 150 (308)
Q Consensus 135 ~~l~~~~G~l~vgt~~ 150 (308)
-++...+|+|+|||.+
T Consensus 9 ~i~~D~~G~lWigT~~ 24 (24)
T PF07494_consen 9 SIYEDSDGNLWIGTYN 24 (24)
T ss_dssp EEEE-TTSCEEEEETS
T ss_pred EEEEcCCcCEEEEeCC
Confidence 3556679999999963
No 19
>PF03213 Pox_P35: Poxvirus P35 protein; InterPro: IPR004900 The Poxvirus P35 protein is an immunodominant envelope protein. It binds to heparan sulphate on the cell surface to provide virion attachment to target cell [].; GO: 0019031 viral envelope
Probab=39.65 E-value=20 Score=35.02 Aligned_cols=24 Identities=38% Similarity=0.742 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHhChhhHhhcCCC
Q 046173 12 RHWDRFKKWLTENFPEAKATLRKG 35 (308)
Q Consensus 12 ~~W~rIe~wL~~~~P~~~~~L~~g 35 (308)
.+|.||.+||+.|+|.....|.-|
T Consensus 256 ~~wsrl~~Wla~~~P~~~y~lttP 279 (325)
T PF03213_consen 256 SIWSRLGKWLAKRFPGAYYFLTTP 279 (325)
T ss_pred hHHHHHHHHHHhhCCCchhhhhch
Confidence 689999999999999988776554
No 20
>TIGR00517 acyl_carrier acyl carrier protein. S (Ser) at position 37 in the seed alignment, in the motif DSLD, is the phosphopantetheine attachment site.
Probab=39.11 E-value=56 Score=24.25 Aligned_cols=46 Identities=15% Similarity=0.287 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHhChhhHhhcCCCCCH-H-----------HHHHHHHHcCCCCCHHH
Q 046173 11 KRHWDRFKKWLTENFPEAKATLRKGASE-A-----------DIQELEKSLKVKLPVPT 56 (308)
Q Consensus 11 ~~~W~rIe~wL~~~~P~~~~~L~~gate-~-----------~I~~~E~~Lg~~LP~d~ 56 (308)
..+.++|.+.+++.+-.....+.+-++= + -+.++|+.+|+++|++-
T Consensus 2 ~~i~~~l~~il~~~~~~~~~~i~~~~~l~~dlglDSl~~veli~~lE~~f~i~i~~~~ 59 (77)
T TIGR00517 2 QEIFEKVKAIIKEQLNVDEDQVTPDASFVEDLGADSLDTVELVMALEEEFDIEIPDEE 59 (77)
T ss_pred hHHHHHHHHHHHHHHCCCHHHCCCCcchhhhcCCcHHHHHHHHHHHHHHHCCCCCHHH
Confidence 3567788888888653333445554442 2 24779999999999874
No 21
>KOG4408 consensus Putative Mg2+ and Co2+ transporter CorD [Inorganic ion transport and metabolism]
Probab=37.25 E-value=25 Score=34.81 Aligned_cols=23 Identities=43% Similarity=0.730 Sum_probs=20.5
Q ss_pred CCCCCcEEEEecCccCCCCCCCC
Q 046173 286 DPKGSPFEVEVAEFPLQQPDYIF 308 (308)
Q Consensus 286 ~~~g~~F~v~Ip~F~L~~P~~i~ 308 (308)
|.++.+|.++.++|.|..|+++|
T Consensus 362 Dvkip~F~~es~ef~~e~P~~~~ 384 (386)
T KOG4408|consen 362 DVKIPPFSLESPEFRLETPRLAF 384 (386)
T ss_pred cccCCceEeeccccccCCCcccc
Confidence 67889999999999999999876
No 22
>CHL00124 acpP acyl carrier protein; Validated
Probab=34.33 E-value=1e+02 Score=23.15 Aligned_cols=46 Identities=11% Similarity=0.282 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHhChhhHhhcCCCCCHHH------------HHHHHHHcCCCCCHHH
Q 046173 11 KRHWDRFKKWLTENFPEAKATLRKGASEAD------------IQELEKSLKVKLPVPT 56 (308)
Q Consensus 11 ~~~W~rIe~wL~~~~P~~~~~L~~gate~~------------I~~~E~~Lg~~LP~d~ 56 (308)
..+++++.+.+++.+-.-.+.+.+-.+=.+ +.++|+.+|+.+|++-
T Consensus 4 ~~i~~~l~~ii~~~~~~~~~~i~~d~~l~~dlg~DSl~~~eli~~le~~f~i~i~~~~ 61 (82)
T CHL00124 4 NDIFEKVQSIVAEQLGIEKSEVTLDANFTRDLGADSLDVVELVMAIEEKFDIEIPDED 61 (82)
T ss_pred HHHHHHHHHHHHHHHCCCHHHCCCCcchhhhcCCcHHHHHHHHHHHHHHHCCccCHHH
Confidence 356888888888875332344544444332 4779999999999854
No 23
>PRK05350 acyl carrier protein; Provisional
Probab=34.18 E-value=89 Score=23.66 Aligned_cols=45 Identities=18% Similarity=0.163 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHhChhhHhhcCCCCC-HH-----------HHHHHHHHcCCCCCHH
Q 046173 11 KRHWDRFKKWLTENFPEAKATLRKGAS-EA-----------DIQELEKSLKVKLPVP 55 (308)
Q Consensus 11 ~~~W~rIe~wL~~~~P~~~~~L~~gat-e~-----------~I~~~E~~Lg~~LP~d 55 (308)
..+.++|.+.+++.+..-...+.+-++ .+ -+.++|..+|+++|++
T Consensus 5 ~~i~~~v~~ii~~~~~~~~~~i~~d~~l~~dlg~DSld~veli~~lE~~fgI~i~~~ 61 (82)
T PRK05350 5 EEILERLRAILVELFEIDPEDITPEANLYEDLDLDSIDAVDLVVHLQKLTGKKIKPE 61 (82)
T ss_pred HHHHHHHHHHHHHHhCCCHHHCCCCccchhhcCCCHHHHHHHHHHHHHHHCCccCHH
Confidence 346777888887775333355666555 23 2378999999999975
No 24
>PRK03643 altronate oxidoreductase; Provisional
Probab=34.14 E-value=59 Score=33.36 Aligned_cols=43 Identities=23% Similarity=0.500 Sum_probs=36.2
Q ss_pred HHHHHH---HHHHHHHHHh--Chh-hHhhcCCCCCHHHHHHHHHHcCCC
Q 046173 9 DVKRHW---DRFKKWLTEN--FPE-AKATLRKGASEADIQELEKSLKVK 51 (308)
Q Consensus 9 ~v~~~W---~rIe~wL~~~--~P~-~~~~L~~gate~~I~~~E~~Lg~~ 51 (308)
+..+.| ..+.+|+.+| ||. +.+..-|+.++++++++++.+|+.
T Consensus 185 ~~a~~~~l~~~~~~Wi~~~v~FpnsmVDRIvP~~~~~~~~~~~~~~G~~ 233 (471)
T PRK03643 185 RYAQEWNLPEAFIQWLEEANTFCSTLVDRIVTGYPRDEAAALEEELGYE 233 (471)
T ss_pred HHHHhccCCHHHHHHHHhcCCCCCcceecCCCCCChHHHHHHHHHhCCC
Confidence 445568 7899999998 677 458889999999999999999984
No 25
>PRK05828 acyl carrier protein; Validated
Probab=32.12 E-value=94 Score=24.21 Aligned_cols=46 Identities=13% Similarity=0.089 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHH-hChhhHhhcCCCCCHH-----------HHHHHHHHcCCCCCHHH
Q 046173 11 KRHWDRFKKWLTE-NFPEAKATLRKGASEA-----------DIQELEKSLKVKLPVPT 56 (308)
Q Consensus 11 ~~~W~rIe~wL~~-~~P~~~~~L~~gate~-----------~I~~~E~~Lg~~LP~d~ 56 (308)
..+.++|++++++ ++.--.+...+-++=+ -+.++|..+|+++|++-
T Consensus 4 ~eI~~~i~~ii~e~~~~~~~d~i~~~~~~~dLg~DSLd~velv~~lE~~f~I~i~~e~ 61 (84)
T PRK05828 4 MEILLKIKEIAKKKNFAVTLDESNINKPYRELKIDSLDMFSIIVSLESEFNIEFSDEK 61 (84)
T ss_pred HHHHHHHHHHHHHhccCCCcccccCCCCHHhcCCCHHHHHHHHHHHHHHHCCCcCHHH
Confidence 3567899999997 3332223333333322 23779999999999753
No 26
>PF12385 Peptidase_C70: Papain-like cysteine protease AvrRpt2; InterPro: IPR022118 This is a family of cysteine proteases, found in actinobacteria, protobacteria and firmicutes. Papain-like cysteine proteases play a crucial role in plant-pathogen/pest interactions. On entering the host they act on non-self substrates, thereby manipulating the host to evade proteolysis []. AvrRpt2 from Pseudomonas syringae pv tomato DC3000 triggers resistance to P. syringae-2-dependent defence responses, including hypersensitive cell death, by cleaving the Arabidopsis RIN4 protein which is monitored by the cognate resistance protein RPS2 [].
Probab=30.81 E-value=26 Score=31.02 Aligned_cols=61 Identities=23% Similarity=0.256 Sum_probs=43.4
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHhChhhH-------hhcCCCCCHHHHHHHHHHcCCCCCH-------HHHHhhhhh
Q 046173 1 MGCFDFYDDVKRHWDRFKKWLTENFPEAK-------ATLRKGASEADIQELEKSLKVKLPV-------PTRILYRFC 63 (308)
Q Consensus 1 ~~~~~~~~~v~~~W~rIe~wL~~~~P~~~-------~~L~~gate~~I~~~E~~Lg~~LP~-------d~r~lyr~h 63 (308)
||||....+|-..|.+=.. +...|+++ ..|+.|-..+++...|..-+++.|+ .++.+++-|
T Consensus 34 mgCWaA~~~Mv~~w~~~~p--rlg~~eLyra~~Glp~~lq~g~d~~~~~~~~gl~~v~~P~~~~~t~e~~~~LL~~y 108 (166)
T PF12385_consen 34 MGCWAACACMVGGWRDQGP--RLGPPELYRADEGLPSQLQDGLDPEDFIRNEGLKEVPEPANASYTAEGLANLLREY 108 (166)
T ss_pred ccHHHHHHHHHHHHhcCCC--CCCcHHHHHHhcCCchhhcccccHHHHHHhcCccccCCCcccccCHHHHHHHHHHc
Confidence 8998888888888865432 23344443 3567777888888888888888886 677777764
No 27
>PF08060 NOSIC: NOSIC (NUC001) domain; InterPro: IPR012976 This is the central domain in Nop56/SIK1-like proteins [].; PDB: 3PLA_K 3ICX_B 3ID6_A 3ID5_E 3NVM_A 3NMU_B 2NNW_C 3NVI_A 3NVK_A 2OZB_E ....
Probab=29.77 E-value=50 Score=23.47 Aligned_cols=26 Identities=19% Similarity=0.530 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHhChhhHhhcC
Q 046173 8 DDVKRHWDRFKKWLTENFPEAKATLR 33 (308)
Q Consensus 8 ~~v~~~W~rIe~wL~~~~P~~~~~L~ 33 (308)
+.+...-.|++.|...||||+..-+.
T Consensus 14 ~ei~~~~~~lre~Y~~~FPEL~~lv~ 39 (53)
T PF08060_consen 14 KEINLLHMRLREWYSWHFPELESLVP 39 (53)
T ss_dssp HHHHHHHHHHHHHHTTTSTTHHHHS-
T ss_pred HHHHHHHHHHHHHHHccchhHHHHcC
Confidence 34566778999999999999875554
No 28
>PF11829 DUF3349: Protein of unknown function (DUF3349); InterPro: IPR021784 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 99 to 124 amino acids in length. ; PDB: 2KVC_A 3OL3_B 3OL4_A 2LKY_A.
Probab=28.85 E-value=1.1e+02 Score=24.86 Aligned_cols=39 Identities=23% Similarity=0.526 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHhChhh---------HhhcCCCCCHHHHHHHHHHc
Q 046173 10 VKRHWDRFKKWLTENFPEA---------KATLRKGASEADIQELEKSL 48 (308)
Q Consensus 10 v~~~W~rIe~wL~~~~P~~---------~~~L~~gate~~I~~~E~~L 48 (308)
|.....+|-+||+.-+|+- .+-|..-.|++||.++=+.|
T Consensus 1 ~~~~l~~iv~WLRaGYP~GvP~~Dy~PLlALL~r~Ltd~ev~~Va~~L 48 (96)
T PF11829_consen 1 MPSFLASIVDWLRAGYPEGVPPTDYVPLLALLRRRLTDDEVAEVAAEL 48 (96)
T ss_dssp HHHHHHHHHHHHHHH-TT-B-HHHHHHHHHHHTTTS-HHHHHHHHHHH
T ss_pred CChHHHHHHHHHHccCCCCCCCCccHHHHHHhcccCCHHHHHHHHHHH
Confidence 5677899999999999983 35667777777777766543
No 29
>COG1274 PckA Phosphoenolpyruvate carboxykinase (GTP) [Energy production and conversion]
Probab=28.18 E-value=3e+02 Score=28.97 Aligned_cols=100 Identities=26% Similarity=0.418 Sum_probs=57.9
Q ss_pred eeccchhHHHHHHHHH-HHHhCCCCCCceEEEeecCCCccee--EEEeccCCcEEEe----------ee---eccCCCce
Q 046173 94 VYLIPLSHIIMETKEI-RRQLHFPGRDKYVVLASSSTYSEKF--FFLNCTNGQLYVG----------TK---NLLSDGEI 157 (308)
Q Consensus 94 ~~LLpL~~i~~~~~~~-r~~~~~~~~~~~~~~aass~~~~k~--~~l~~~~G~l~vg----------t~---~~~~~g~~ 157 (308)
...++.+|...++.++ |.++. ++.-|++..+....+..+ +-+.-+|-. ||. +. ++..+|++
T Consensus 101 nNw~~p~e~~~~m~~l~~G~Mr--GrtmyVvpf~mGP~~Spf~~~gVeiTDS~-YVv~sm~imtRmG~~vl~~lG~~g~F 177 (608)
T COG1274 101 NNWMDPQEMRSEMNELFRGCMR--GRTMYVVPFCMGPLNSPFTILGVELTDSP-YVVHSMRIMTRMGKEVLEKLGDDGNF 177 (608)
T ss_pred cCCCCHHHHHHHHHHHHHhhhc--CceEEEEeeeeCCCCCCcccceeEeecCc-eeeeehHHHHHHHHHHHHhcCCCCce
Confidence 3568899998886554 44544 556688887765433322 333333333 322 21 33457889
Q ss_pred eecCCccccccCCCCCccccccccccccccceeeecCCCCCccc
Q 046173 158 IPCVPNALISLGHSFNSDQQQDLCCYEENFKFINLFPEEPSHCS 201 (308)
Q Consensus 158 ~pc~p~~~i~~~~~~~~~~~~d~~w~~~~~~~i~l~P~~~~~~s 201 (308)
++|+.- .+.++. ...+|-.|.+...++|..||+.....|
T Consensus 178 vk~vHS----vG~pL~-pg~~dv~wPcn~~k~i~hfped~~v~S 216 (608)
T COG1274 178 VKCVHS----VGKPLD-PGQKDVAWPCNETKYIRHFPEDREVWS 216 (608)
T ss_pred eeeeec----cCCCCC-CCcccCcCCcccccceeecCCCcceEe
Confidence 999862 222211 134455587667888999999655443
No 30
>COG0246 MtlD Mannitol-1-phosphate/altronate dehydrogenases [Carbohydrate transport and metabolism]
Probab=27.46 E-value=95 Score=32.03 Aligned_cols=47 Identities=26% Similarity=0.557 Sum_probs=38.1
Q ss_pred hHHHHHHHHH-HHHHHHHh--Chh-hHhhcCCCCCHHHHHHHHHHcCCCCC
Q 046173 7 YDDVKRHWDR-FKKWLTEN--FPE-AKATLRKGASEADIQELEKSLKVKLP 53 (308)
Q Consensus 7 ~~~v~~~W~r-Ie~wL~~~--~P~-~~~~L~~gate~~I~~~E~~Lg~~LP 53 (308)
+.+....|+. +-+|+.+| ||. +.+..-|+.|++++++++..+|+.=|
T Consensus 186 Vl~~a~~~~~~~a~wi~~~v~FpnsmVDRIVP~~t~~~~~~i~~~~g~~D~ 236 (473)
T COG0246 186 VLRFASEWDLALAAWIEENVGFPNSMVDRIVPATTDDERDEIEDALGVEDP 236 (473)
T ss_pred HHHHHHhhhhHHHHHHHhcCCCCcccccccCCCCChHHHHHHHHHhcCCCc
Confidence 3455667744 88999998 788 56899999999999999999998444
No 31
>TIGR01837 PHA_granule_1 poly(hydroxyalkanoate) granule-associated protein. This model describes a domain found in some proteins associated with polyhydroxyalkanoate (PHA) granules in a subset of species that have PHA inclusion granules. Included are two tandem proteins of Pseudomonas oleovorans, PhaI and PhaF, and their homologs in related species. PhaF proteins have a low-complexity C-terminal region with repeats similar to AAAKP.
Probab=26.13 E-value=1.2e+02 Score=25.06 Aligned_cols=37 Identities=27% Similarity=0.515 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHhChhhHhhcCCCCCHHHHHHHHHHc
Q 046173 11 KRHWDRFKKWLTENFPEAKATLRKGASEADIQELEKSL 48 (308)
Q Consensus 11 ~~~W~rIe~wL~~~~P~~~~~L~~gate~~I~~~E~~L 48 (308)
...|++++.-+.+..-.+...|+-+ |.+||+++++.+
T Consensus 69 ~~~~~~le~~~~~~v~~~L~~lg~~-tk~ev~~L~~RI 105 (118)
T TIGR01837 69 QRNWDKLEKAFDERVEQALNRLNIP-SREEIEALSAKI 105 (118)
T ss_pred HhhHHHHHHHHHHHHHHHHHHcCCC-CHHHHHHHHHHH
Confidence 4679999999999988888888877 888999988864
No 32
>smart00431 SCAN leucine rich region.
Probab=25.06 E-value=1.5e+02 Score=24.72 Aligned_cols=48 Identities=25% Similarity=0.385 Sum_probs=37.2
Q ss_pred ChHHHHHHHHHHHHHHHHhChhhHhhcCCCCCHHHH---HHHHHHcCCCCCHHHHHhhhhhC
Q 046173 6 FYDDVKRHWDRFKKWLTENFPEAKATLRKGASEADI---QELEKSLKVKLPVPTRILYRFCD 64 (308)
Q Consensus 6 ~~~~v~~~W~rIe~wL~~~~P~~~~~L~~gate~~I---~~~E~~Lg~~LP~d~r~lyr~hn 64 (308)
....+.++|+-...||+ |+.. |.++| -.+|.-|.+ ||.+++.+-|-|.
T Consensus 19 p~eaL~~L~eLc~~WLr---Pe~~-------tKeqilElLVlEQFL~i-lP~e~q~wv~~~~ 69 (113)
T smart00431 19 PREALSRLRELCRQWLR---PELH-------TKEQILELLVLEQFLTI-LPGELQAWVREHH 69 (113)
T ss_pred hHHHHHHHHHHHHhhcC---hhhh-------hHHHHHHHHHHHHHhcc-CcHHHHHHHHhcC
Confidence 35567788888899998 7755 77766 557888888 9999999987753
No 33
>PF10691 DUF2497: Protein of unknown function (DUF2497) ; InterPro: IPR019632 Members of this family belong to the Alphaproteobacteria. The function of the family is not known.
Probab=24.90 E-value=42 Score=25.81 Aligned_cols=16 Identities=38% Similarity=0.750 Sum_probs=13.1
Q ss_pred HHHHHHHHhChhhHhh
Q 046173 16 RFKKWLTENFPEAKAT 31 (308)
Q Consensus 16 rIe~wL~~~~P~~~~~ 31 (308)
-|+.||.+|.|.+...
T Consensus 46 mLkeWLD~nLP~lVEr 61 (73)
T PF10691_consen 46 MLKEWLDENLPGLVER 61 (73)
T ss_pred HHHHHHHhccHHHHHH
Confidence 3689999999987743
No 34
>PTZ00171 acyl carrier protein; Provisional
Probab=24.55 E-value=1.4e+02 Score=25.96 Aligned_cols=45 Identities=11% Similarity=0.118 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHhChhhHhhcCCCCCH-H-----------HHHHHHHHcCCCCCHH
Q 046173 11 KRHWDRFKKWLTENFPEAKATLRKGASE-A-----------DIQELEKSLKVKLPVP 55 (308)
Q Consensus 11 ~~~W~rIe~wL~~~~P~~~~~L~~gate-~-----------~I~~~E~~Lg~~LP~d 55 (308)
..+.++|.+.+++...--.+.+.+-++- + -+.++|+.+|+++|++
T Consensus 69 ~~v~~~l~eiiae~l~vd~~~I~~ds~~~~dLg~DSLd~veLv~~LEdeFgI~Ipde 125 (148)
T PTZ00171 69 EDVLTRVKKVVKNFEKVDASKITPESNFVKDLGADSLDVVELLIAIEQEFNLTIPDH 125 (148)
T ss_pred HHHHHHHHHHHHHHhCCCHhhCCCCcchhhhcCCCHHHHHHHHHHHHHHHCCccCHH
Confidence 4578899999998774334556665552 2 3478999999999986
No 35
>PRK07117 acyl carrier protein; Validated
Probab=23.32 E-value=2e+02 Score=22.09 Aligned_cols=46 Identities=22% Similarity=0.377 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHhChhh-HhhcCCCCCHHH-----------HHHHHHHcCCCCCHHH
Q 046173 11 KRHWDRFKKWLTENFPEA-KATLRKGASEAD-----------IQELEKSLKVKLPVPT 56 (308)
Q Consensus 11 ~~~W~rIe~wL~~~~P~~-~~~L~~gate~~-----------I~~~E~~Lg~~LP~d~ 56 (308)
.++.++|++-+.+.+|++ .+.+.+-++=.+ +.++|..+|+++|++=
T Consensus 4 ~ei~~~v~~ii~e~~p~i~~~~I~~~~~l~DLg~DSlD~veiv~~led~f~i~I~~~~ 61 (79)
T PRK07117 4 QRIFDILVRHIREVLPDLDQHQFQPEDSLVDLGANSMDRAEIVIMTLESLSLKIPLVE 61 (79)
T ss_pred HHHHHHHHHHHHHHcCCCCHHHCCCCCChhhcCCChHHHHHHHHHHHHHHCCccCHHH
Confidence 457889999999999843 244544333322 3668999999999653
No 36
>PF11239 DUF3040: Protein of unknown function (DUF3040); InterPro: IPR021401 Some members in this family of proteins with unknown function are annotated as membrane proteins however this cannot be confirmed.
Probab=22.30 E-value=89 Score=24.01 Aligned_cols=24 Identities=25% Similarity=0.407 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHhChhhHhhcCC
Q 046173 11 KRHWDRFKKWLTENFPEAKATLRK 34 (308)
Q Consensus 11 ~~~W~rIe~wL~~~~P~~~~~L~~ 34 (308)
++.++.||.-|....|+..+.+..
T Consensus 8 ~r~L~eiEr~L~~~DP~fa~~l~~ 31 (82)
T PF11239_consen 8 QRRLEEIERQLRADDPRFAARLRS 31 (82)
T ss_pred HHHHHHHHHHHHhcCcHHHHHhcc
Confidence 578999999999999999998887
No 37
>TIGR01159 DRP1 density-regulated protein DRP1. This protein family shows weak but suggestive similarity to translation initiation factor SUI1 and its prokaryotic homologs.
Probab=21.01 E-value=67 Score=28.69 Aligned_cols=22 Identities=41% Similarity=0.622 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHhChhhHhhcCC
Q 046173 13 HWDRFKKWLTENFPEAKATLRK 34 (308)
Q Consensus 13 ~W~rIe~wL~~~~P~~~~~L~~ 34 (308)
.|++=+.||.+|+|++++.|-.
T Consensus 22 ~~~kCk~WL~~n~p~l~~~l~~ 43 (173)
T TIGR01159 22 DLKRCKVWLSENAPDLYAKLYG 43 (173)
T ss_pred CHHHHHHHHHHhChHHHHHHhh
Confidence 4788899999999999988754
No 38
>PF10076 DUF2313: Uncharacterized protein conserved in bacteria (DUF2313); InterPro: IPR018755 Members of this family of proteins comprise various hypothetical and putative bacteriophage tail proteins, including Gp48 from Bacteriophage Mu and other Mu-like prophages such as FluMu.
Probab=20.33 E-value=1.6e+02 Score=25.67 Aligned_cols=37 Identities=24% Similarity=0.368 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHhChhhHhhcCCCCCHHHHHHHHHHcCCCCC
Q 046173 9 DVKRHWDRFKKWLTENFPEAKATLRKGASEADIQELEKSLKVKLP 53 (308)
Q Consensus 9 ~v~~~W~rIe~wL~~~~P~~~~~L~~gate~~I~~~E~~Lg~~LP 53 (308)
.+.++|++++.-+.+-+|... + .-|...|+.||++-.
T Consensus 30 el~~~~~~~~~l~~e~f~~Ta-------t-~~L~~wE~~lgi~~~ 66 (179)
T PF10076_consen 30 ELDRLDDRADDLLDEQFPSTA-------T-WGLPRWERMLGIPPN 66 (179)
T ss_pred HHHHHHHHHHHHHHcCCHHHH-------H-HHHHHHHHHcCCCCC
Confidence 467788888888888888854 5 789999999998753
Done!