Query 046173
Match_columns 308
No_of_seqs 255 out of 759
Neff 5.8
Searched_HMMs 29240
Date Mon Mar 25 16:21:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046173.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/046173hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2f1e_A Protein APAG; APAG prot 100.0 1.1E-35 3.9E-40 248.7 10.1 100 200-307 1-126 (127)
2 1xvs_A Protein APAG; MCSG APC2 100.0 3.2E-35 1.1E-39 245.6 9.9 98 202-307 2-125 (126)
3 1tza_A APAG protein, SOR45; st 100.0 2.1E-34 7.2E-39 242.8 8.4 100 202-306 2-124 (134)
4 1xq4_A Protein APAG; all beta 100.0 2.7E-34 9.1E-39 243.4 9.0 98 202-307 7-130 (139)
5 3d5p_A Putative glucan synthes 98.7 4.4E-08 1.5E-12 82.3 9.6 94 31-148 10-103 (144)
6 2icg_A LIN2918 protein; hypoth 98.6 3.3E-07 1.1E-11 77.7 12.1 118 12-148 5-128 (160)
7 2prv_A Uncharacterized protein 98.6 3.6E-07 1.2E-11 77.2 11.8 107 15-147 5-116 (153)
8 2pag_A Hypothetical protein; n 97.9 3.3E-05 1.1E-09 64.4 8.6 32 32-63 18-49 (135)
9 3ffv_A Protein SYD; membrane, 71.5 13 0.00045 32.2 7.7 95 39-147 60-156 (181)
10 1fad_A Protein (FADD protein); 66.9 13 0.00046 28.1 6.2 62 1-64 4-66 (99)
11 4dxe_H ACP, acyl carrier prote 30.1 59 0.002 24.7 4.3 45 12-56 26-82 (101)
12 2kvc_A Putative uncharacterize 22.8 1.6E+02 0.0054 23.1 5.5 38 10-47 4-50 (103)
13 3cfu_A Uncharacterized lipopro 22.5 2.3E+02 0.0079 23.3 6.9 67 226-299 55-127 (159)
No 1
>2f1e_A Protein APAG; APAG protein, xanthomonas axonopodis PV.citri, structural genomics, unknown function; NMR {Xanthomonas axonopodis PV}
Probab=100.00 E-value=1.1e-35 Score=248.71 Aligned_cols=100 Identities=25% Similarity=0.334 Sum_probs=85.7
Q ss_pred ccccccCCcEEEEEeEEccCCCCcce-------------ecCCCCCcEEEecceEEEEeCCCceEEEEcCeeeee-----
Q 046173 200 CSIAVTNGMNTCLRIQFTSLLPEGCI-------------INGMTFSSCLLQHRHWVIHAYNVVLSDVSGEAVIGM----- 261 (308)
Q Consensus 200 ~s~~~T~gI~V~v~~~y~s~~p~~~~-------------i~n~~~~~vqL~sRhW~I~d~~g~~~eV~G~GVVG~----- 261 (308)
|.+++|+||+|+|++.| +|++|. |+|.++.+|||++|||+|+|++|++++|+|+||||+
T Consensus 1 ~~~~~t~~I~V~V~~~y---~~e~S~p~~~~y~faY~I~I~N~~~~~vQL~sRhW~Itd~~g~~~eV~G~GVVG~qP~L~ 77 (127)
T 2f1e_A 1 MQDDPRYRVEVEVSPRF---LAHQSTPDEGRYAFAYSIRIQNAGAVPARLVARHWQITDGNGRTEQVDGEGVVGEQPWLR 77 (127)
T ss_dssp -----CCCEEEEEEEEE---CSTTCBGGGTBEEEEEEEEEEECSSSCEEEEEEEEEEEETTSCEEEEEESSBTTBCCEEC
T ss_pred CccceECCEEEEEEEEE---chhhCCCcCCEEEEEEEEEEEeCCCCCEEEEeceEEEEeCCCCEEEEECCCeecCCCcCC
Confidence 34689999999999999 555441 999999999999999999999999999999999998
Q ss_pred --------cCccccCCeeEEEEEEEEEecccCCCCCCcEEEEecCccCCCCCCC
Q 046173 262 --------SCTPLPGSSGSVRGSLMFVPARLADPKGSPFEVEVAEFPLQQPDYI 307 (308)
Q Consensus 262 --------S~~~l~t~~G~M~G~y~~~p~~l~~~~g~~F~v~Ip~F~L~~P~~i 307 (308)
|||+|+||.|+|+|+|+|+ +++|+.|+|.||+|+|++|.+|
T Consensus 78 PGe~f~YtSg~~L~tp~G~M~G~y~m~-----~~~G~~F~v~Ip~F~L~~P~~l 126 (127)
T 2f1e_A 78 PGEAFHYTSGVLLETEQGQMQGHYDMV-----ADDGTEFIAPIAAFVLSVPRTL 126 (127)
T ss_dssp TTCEEEEEEEEEESSSCEEEEEEEEEE-----ETTCCEEEEEEEEEEEC-----
T ss_pred CCCceEEeCCcCcCCCcEEEEEEEEEE-----ECCCCEEEEECCceEcCCCccc
Confidence 9999999999999999999 7889999999999999999865
No 2
>1xvs_A Protein APAG; MCSG APC26324, midwest center for structural genomics, structure initiative, PSI, structural genomics, unknown FUN; 2.01A {Vibrio cholerae} SCOP: b.1.23.1
Probab=100.00 E-value=3.2e-35 Score=245.57 Aligned_cols=98 Identities=23% Similarity=0.439 Sum_probs=91.1
Q ss_pred ccccCCcEEEEEeEEccCCCCcce-------------ecCCCCCcEEEecceEEEEeCCCceEEEEcCeeeee-------
Q 046173 202 IAVTNGMNTCLRIQFTSLLPEGCI-------------INGMTFSSCLLQHRHWVIHAYNVVLSDVSGEAVIGM------- 261 (308)
Q Consensus 202 ~~~T~gI~V~v~~~y~s~~p~~~~-------------i~n~~~~~vqL~sRhW~I~d~~g~~~eV~G~GVVG~------- 261 (308)
+++|+||+|+|++.| +|++|. |+|.++.+|||++|||+|+|++|++++|+|+||||+
T Consensus 2 ~~~t~~I~V~V~~~y---~~e~S~p~~~~y~faY~I~I~N~~~~~vQL~sRhW~Itd~~g~~~eV~G~GVVG~qP~L~PG 78 (126)
T 1xvs_A 2 DVSLPCIKIQVQTRY---IEEQSNPEYQRFVFAYLITIKNLSSQTVQLMSRRWLITDADGKQTVVEGDGVVGEQPRIKAN 78 (126)
T ss_dssp BCSCCCEEEEEEEEE---CGGGCBGGGTBEEEEEEEEEEECSSSCEEEEEEEEEEEETTCCEEEEEEESBTTBCCEECTT
T ss_pred CcccCCEEEEEEEEE---chhcCCCcCCEEEEEEEEEEEECCCCCEEEEecEEEEEeCCCCEEEEECCceEcCCCcCCCC
Confidence 578999999999999 454431 999999999999999999999999999999999998
Q ss_pred ------cCccccCCeeEEEEEEEEEecccCCCCCCcEEEEecCccCCCCCCC
Q 046173 262 ------SCTPLPGSSGSVRGSLMFVPARLADPKGSPFEVEVAEFPLQQPDYI 307 (308)
Q Consensus 262 ------S~~~l~t~~G~M~G~y~~~p~~l~~~~g~~F~v~Ip~F~L~~P~~i 307 (308)
|||+|+||.|+|+|+|+|+ +++|+.|+|.||+|+|++|.+|
T Consensus 79 e~f~YtSg~~L~tp~G~M~G~y~m~-----~~~G~~F~v~Ip~F~L~~P~~l 125 (126)
T 1xvs_A 79 DEYTYSSGTALDTPVGVMQGQYLMI-----DEQGESFTVEIEPFRLAVPHVL 125 (126)
T ss_dssp CEEEEEEEEEESSSEEEEEEEEEEE-----CTTSCEEEEEEEEEEEECCCC-
T ss_pred CceEEeCCcCcCCCcEEEEEEEEEE-----ECCCCEEEEECCceEcCCcccc
Confidence 9999999999999999999 7899999999999999999875
No 3
>1tza_A APAG protein, SOR45; structural genomics, PSI, protein structure initiative, NORT structural genomics consortium, NESG, unknown function; 2.40A {Shewanella oneidensis} SCOP: b.1.23.1
Probab=100.00 E-value=2.1e-34 Score=242.82 Aligned_cols=100 Identities=26% Similarity=0.408 Sum_probs=89.9
Q ss_pred ccccCCcEEEEEeEE---ccCCCC-cce------ecCCCCCcEEEecceEEEEeCCCceEEEEcCeeeee----------
Q 046173 202 IAVTNGMNTCLRIQF---TSLLPE-GCI------INGMTFSSCLLQHRHWVIHAYNVVLSDVSGEAVIGM---------- 261 (308)
Q Consensus 202 ~~~T~gI~V~v~~~y---~s~~p~-~~~------i~n~~~~~vqL~sRhW~I~d~~g~~~eV~G~GVVG~---------- 261 (308)
+++|+||+|+|++.| +|...+ +++ |+|.++.+|||++|||+|+|++|++++|+|+||||+
T Consensus 2 ~~~t~~I~V~V~~~y~~e~S~p~~~~y~faY~ItI~N~~~~~vQL~sRhW~Itd~~g~~~eV~G~GVVGeqP~L~PGe~F 81 (134)
T 1tza_A 2 SALDNSIRVEVKTEYIEQQSSPEDEKYLFSYTITIINLGEQAAKLETRHWIITDANGKTSEVQGAGVVGETPTIPPNTAY 81 (134)
T ss_dssp -CGGGTEEEEEEEEEEEECCBTTBCCEEEEEEEEEEECSSSCEEEEEEEEEEEETTSCEEEEEEESBTTBCCEECTTEEE
T ss_pred CCccCCEEEEEEEEEchhhCCCCCCEEEEEEEEEEEeCCCCCEEEEecEEEEEeCCCCEEEEEcCceEcCCCcCCCCCce
Confidence 367999999999999 443222 121 999999999999999999999999999999999998
Q ss_pred ---cCccccCCeeEEEEEEEEEecccCCCCCCcEEEEecCccCCCCCC
Q 046173 262 ---SCTPLPGSSGSVRGSLMFVPARLADPKGSPFEVEVAEFPLQQPDY 306 (308)
Q Consensus 262 ---S~~~l~t~~G~M~G~y~~~p~~l~~~~g~~F~v~Ip~F~L~~P~~ 306 (308)
|||+|+||.|+|+|+|+|+ +++|+.|+|.||+|+|++|..
T Consensus 82 ~YtSg~~L~Tp~G~M~G~y~m~-----~~~G~~F~v~Ip~F~L~~P~~ 124 (134)
T 1tza_A 82 QYTSGTVLDTPFGIMYGTYGMV-----SESGEHFNAIIKPFRLATPGL 124 (134)
T ss_dssp EEEEEEEESSSEEEEEEEEEEE-----ETTCCEEEEEEEEEEEECTTS
T ss_pred EEcCCcCcCCCceEEEEEEEEE-----ECCCCEEEEECCCeEccCCCh
Confidence 9999999999999999999 788999999999999999975
No 4
>1xq4_A Protein APAG; all beta protein, structural genomics, protein structure initiative, PSI, northeast structural genomics consortium, NESG; 2.70A {Bordetella pertussis} SCOP: b.1.23.1
Probab=100.00 E-value=2.7e-34 Score=243.43 Aligned_cols=98 Identities=30% Similarity=0.538 Sum_probs=90.5
Q ss_pred ccccCCcEEEEEeEEccCCCCcc-------e------ecCCCCCcEEEecceEEEEeCCCceEEEEcCeeeee-------
Q 046173 202 IAVTNGMNTCLRIQFTSLLPEGC-------I------INGMTFSSCLLQHRHWVIHAYNVVLSDVSGEAVIGM------- 261 (308)
Q Consensus 202 ~~~T~gI~V~v~~~y~s~~p~~~-------~------i~n~~~~~vqL~sRhW~I~d~~g~~~eV~G~GVVG~------- 261 (308)
..+|+||+|+|++.| +|++| + |+|.++.+|||++|||+|+|++|++++|+|+||||+
T Consensus 7 ~~tT~gI~V~V~~~y---~~e~S~p~~~~y~FaY~ItI~N~~~~~vQL~sRhW~ItD~~G~~~eV~G~GVVGeqPvL~PG 83 (139)
T 1xq4_A 7 PVKPYDLTVSVTPRY---VPEQSDPSQQQYVFAYTVRITNTGSHPAQVISRHWIITDGEERVQEVRGLGVVGQQPLLAPG 83 (139)
T ss_dssp CCCSSCEEEEEEEEE---CGGGCBGGGTBEEEEEEEEEEECSSSCEEEEEEEEEEECTTSCEEEEEEESSSSCCCEECTT
T ss_pred ccccCCEEEEEEEEE---chhhCCCCCCEEEEEEEEEEEeCCCCCEEEEecEEEEEeCCCCEEEEECCCeecCCCcCCCC
Confidence 467899999999999 44443 1 999999999999999999999999999999999998
Q ss_pred ------cCccccCCeeEEEEEEEEEecccCCCCCCcEEEEecCccCCCCCCC
Q 046173 262 ------SCTPLPGSSGSVRGSLMFVPARLADPKGSPFEVEVAEFPLQQPDYI 307 (308)
Q Consensus 262 ------S~~~l~t~~G~M~G~y~~~p~~l~~~~g~~F~v~Ip~F~L~~P~~i 307 (308)
|||+|+||.|+|+|+|+|+ +++|+.|+|.||+|+|++|..|
T Consensus 84 e~F~YtSg~~L~Tp~G~M~G~y~m~-----~~~G~~F~v~Ip~F~L~~P~~l 130 (139)
T 1xq4_A 84 ETFEYTSGCPLPTPIGTMRGTYHCV-----GENGIPFEVPIAEFLLAMPRTL 130 (139)
T ss_dssp CEEEEEEEEEESSSEEEEEEEEEEE-----ETTSCEEEEEEEEEEEECTTC-
T ss_pred CceEEcCCcCcCCCceEEEEEEEEE-----eCCCCEEEEECCCeEcCCCChh
Confidence 9999999999999999999 7889999999999999999865
No 5
>3d5p_A Putative glucan synthesis regulator of SMI1/KNR4; STR genomics, joint center for structural genomics, JCSG; HET: MSE; 1.45A {Bacteroides fragilis nctc 9343}
Probab=98.73 E-value=4.4e-08 Score=82.26 Aligned_cols=94 Identities=20% Similarity=0.382 Sum_probs=67.6
Q ss_pred hcCCCCCHHHHHHHHHHcCCCCCHHHHHhhhhhCCcccccCCcccccccccccceecccceeeeeccchhHHHHHHHHHH
Q 046173 31 TLRKGASEADIQELEKSLKVKLPVPTRILYRFCDGQECQTDDFESIGSMGLIGGYSFYGHLVNVYLIPLSHIIMETKEIR 110 (308)
Q Consensus 31 ~L~~gate~~I~~~E~~Lg~~LP~d~r~lyr~hnGQ~~~~~~~~~~~~~GLigG~~~y~~~~n~~LLpL~~i~~~~~~~r 110 (308)
.+++|||+++|+++|+.||++||++||++|+.|||..... |+ .+ ..+++++++++..+.++
T Consensus 10 ~~~~~~s~~~I~~~E~~lgi~lP~~Yk~fl~~~NGg~~~~------------~~-~~------~~l~~~~~i~e~n~~~~ 70 (144)
T 3d5p_A 10 YKKDGASSASIDDVEKLLNTTLPKQYKSFLLWSNGGEGKL------------GD-NY------IYIWAIEDVIAYNHDYG 70 (144)
T ss_dssp EECCCCCHHHHHHHHHHHTSCCCHHHHHHHHHCSSEEEEE------------TT-EE------EEECCHHHHHHHHHHHT
T ss_pred ccCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHhCCCcccC------------CC-ce------eEeeCHHHHHHHHHHhh
Confidence 5789999999999999999999999999999999987531 11 01 34678888888766664
Q ss_pred HHhCCCCCCceEEEeecCCCcceeEEEeccCCcEEEee
Q 046173 111 RQLHFPGRDKYVVLASSSTYSEKFFFLNCTNGQLYVGT 148 (308)
Q Consensus 111 ~~~~~~~~~~~~~~aass~~~~k~~~l~~~~G~l~vgt 148 (308)
.....+ ..+++++.... -.+.++.++++||+..
T Consensus 71 ~~~~~p--~~~i~i~~D~g---~~~~~d~~~~~V~~~d 103 (144)
T 3d5p_A 71 IQKYLQ--KEYWAFGMDGD---IGYILHLSDNSIYRVD 103 (144)
T ss_dssp HHHHSC--TTEEEEEEETT---EEEEEETTTCCEEEEE
T ss_pred hhhhcC--CCEEEEEEcCC---eEEEECCCCCEEEEEE
Confidence 322222 22677776542 4456676678888754
No 6
>2icg_A LIN2918 protein; hypothetical protein, structural genomics, PSI- protein structure initiative, joint center for structural G JCSG; 1.65A {Listeria innocua} SCOP: d.369.1.1
Probab=98.62 E-value=3.3e-07 Score=77.74 Aligned_cols=118 Identities=8% Similarity=0.087 Sum_probs=75.9
Q ss_pred HHHHHHHHHHHHhChhhHhhcCCCCCHHHHHHHHHHcCCCCCHHHHHhhhhhCCcccccCCcccccccccccceecccce
Q 046173 12 RHWDRFKKWLTENFPEAKATLRKGASEADIQELEKSLKVKLPVPTRILYRFCDGQECQTDDFESIGSMGLIGGYSFYGHL 91 (308)
Q Consensus 12 ~~W~rIe~wL~~~~P~~~~~L~~gate~~I~~~E~~Lg~~LP~d~r~lyr~hnGQ~~~~~~~~~~~~~GLigG~~~y~~~ 91 (308)
..-++|++.+.++--. ..+.+|+|+++|+++|+.||++||++||++++.+||-..... ..+|+-. .
T Consensus 5 ~~~~~i~~~i~~~~~~--~~~~~~~s~~~I~~~E~~Lgi~lP~~Yk~fL~~~~gg~~~g~-----~i~~i~~----~--- 70 (160)
T 2icg_A 5 SFLEEVDRLITLSGIT--FHASGTGTPELIKIYQDALGNEFPETYKLFLEKYGTLTFNGV-----SFYGISK----R--- 70 (160)
T ss_dssp HHHHHHHHHHHHCCSC--CBCCCCCCHHHHHHHHHHHTCCCCHHHHHHHHHTSSEEETTE-----EECBCCT----T---
T ss_pred HHHHHHHHHHHHcccc--cccCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHhCCcccCce-----eeeeecc----C---
Confidence 5567888888776532 456789999999999999999999999999999998764310 0111110 0
Q ss_pred eeeeccchhHHHHHHHHHHHHhCCCCCCceEEEeecCCCcceeEEEecc------CCcEEEee
Q 046173 92 VNVYLIPLSHIIMETKEIRRQLHFPGRDKYVVLASSSTYSEKFFFLNCT------NGQLYVGT 148 (308)
Q Consensus 92 ~n~~LLpL~~i~~~~~~~r~~~~~~~~~~~~~~aass~~~~k~~~l~~~------~G~l~vgt 148 (308)
.....+...++..+..+|....++ +.+++++.+. .+-++.+|.+ ++.||...
T Consensus 71 -~~~~~~~~~i~~~~~~~~~~~~~p--~~~i~i~~~~--~G~~~~ld~~~~~~~~e~~V~~~d 128 (160)
T 2icg_A 71 -GLSAASIPDVKFATEQARTFGDIN--KEMIMIKNSG--YGSIFSIDTSIIGSEGEPVIVETN 128 (160)
T ss_dssp -GGGCCSTTBHHHHHHHHHHHTSSC--TTEEEEEECS--TTCEEEEEEEEECTTSSEEEEEEC
T ss_pred -CcccCCCccchhhhHHHHHhcCCC--CCEEEEEecC--CCCEEEEEecccCCCCCCeEEEEE
Confidence 011123356777788888764544 3356665443 2246667654 45566543
No 7
>2prv_A Uncharacterized protein YOBK; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.30A {Bacillus subtilis} SCOP: d.369.1.1
Probab=98.61 E-value=3.6e-07 Score=77.24 Aligned_cols=107 Identities=18% Similarity=0.271 Sum_probs=70.3
Q ss_pred HHHHHHHHHhChhhHhhcCCCCCHHHHHHHHHHcCCCCCHHHHHhhhhhCCcccccCCcccccccccccceecccceeee
Q 046173 15 DRFKKWLTENFPEAKATLRKGASEADIQELEKSLKVKLPVPTRILYRFCDGQECQTDDFESIGSMGLIGGYSFYGHLVNV 94 (308)
Q Consensus 15 ~rIe~wL~~~~P~~~~~L~~gate~~I~~~E~~Lg~~LP~d~r~lyr~hnGQ~~~~~~~~~~~~~GLigG~~~y~~~~n~ 94 (308)
+.|++-+.++.-. ....+|+|+++|+++|+.||++||.+||+|++.|||-... |...|+.....
T Consensus 5 ~~i~~li~~~~~~--~~~~~~~see~I~~~E~~Lgi~lP~dYk~fLk~~ngg~~~--------------~~~i~~i~~~~ 68 (153)
T 2prv_A 5 SKVENFINENKQN--AIFTEGASHENIGRIEENLQCDLPNSYKWFLEKYGAGGLF--------------GVLVLGYNFDH 68 (153)
T ss_dssp HHHHHHHHHHGGG--CEECCCCCHHHHHHHHHHHTSCCCHHHHHHHHHHCSEEET--------------TEEECCCCSSS
T ss_pred HHHHHHHHHhhhh--cccCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHhCCceec--------------eEEEEeccCCC
Confidence 3445545544211 4667899999999999999999999999999999986642 21222111111
Q ss_pred eccchhHHHHHHHHHHHHhCCCCCCceEEEeecCCCcceeEEEecc-----CCcEEEe
Q 046173 95 YLIPLSHIIMETKEIRRQLHFPGRDKYVVLASSSTYSEKFFFLNCT-----NGQLYVG 147 (308)
Q Consensus 95 ~LLpL~~i~~~~~~~r~~~~~~~~~~~~~~aass~~~~k~~~l~~~-----~G~l~vg 147 (308)
..++..+..+|....++ +.++++ +.+ ...++.||.+ ++.+|+.
T Consensus 69 -----~~i~~~~~~~~~~~~~p--~~~i~i-~~~--g~~~~~ld~~~~~~~~~pv~~w 116 (153)
T 2prv_A 69 -----ASVVNRTNEYKEHYGLT--DGLVVI-EDV--DYFAYCLDTNKMKDGECPVVEW 116 (153)
T ss_dssp -----CHHHHHHHHHHHHSCCC--TTEEEE-EEC--SSEEEEEETTSCBTTBCCEEEE
T ss_pred -----ccHHHHHHHHHHhcCCC--CcEEEE-ecC--CCcEEEEeccccCCCCCCEEEE
Confidence 46777778888764444 346666 433 4467778875 4677773
No 8
>2pag_A Hypothetical protein; nysgx, target 10412I, novel fold, structural genomics, PSI-2 structure initiative; 1.60A {Pseudomonas syringae PV} SCOP: d.369.1.1
Probab=97.93 E-value=3.3e-05 Score=64.45 Aligned_cols=32 Identities=16% Similarity=0.197 Sum_probs=29.0
Q ss_pred cCCCCCHHHHHHHHHHcCCCCCHHHHHhhhhh
Q 046173 32 LRKGASEADIQELEKSLKVKLPVPTRILYRFC 63 (308)
Q Consensus 32 L~~gate~~I~~~E~~Lg~~LP~d~r~lyr~h 63 (308)
...++|+++|.++|+.||++||+|||++++-+
T Consensus 18 ~~~~~t~e~I~~~E~~Lgi~fP~dYk~fl~~~ 49 (135)
T 2pag_A 18 PLELPDEDQLVEIEEQLFINIPFVFKEFLLTV 49 (135)
T ss_dssp CCCCCCHHHHHHHHHHHTCCCCHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHC
Confidence 45566999999999999999999999999974
No 9
>3ffv_A Protein SYD; membrane, translocon, secyeg, nanodisc, cell inner membrane, cell membrane, protein binding; 2.00A {Escherichia coli}
Probab=71.48 E-value=13 Score=32.19 Aligned_cols=95 Identities=6% Similarity=0.133 Sum_probs=53.6
Q ss_pred HHHHHHHHHcCCCCCHHHHHhhhhhCCcccccCCcccccccccccceecc--cceeeeeccchhHHHHHHHHHHHHhCCC
Q 046173 39 ADIQELEKSLKVKLPVPTRILYRFCDGQECQTDDFESIGSMGLIGGYSFY--GHLVNVYLIPLSHIIMETKEIRRQLHFP 116 (308)
Q Consensus 39 ~~I~~~E~~Lg~~LP~d~r~lyr~hnGQ~~~~~~~~~~~~~GLigG~~~y--~~~~n~~LLpL~~i~~~~~~~r~~~~~~ 116 (308)
.++..+|+.|+++|.+|++++|-- ... +.-.+-++|+.+- --+-...+--|.|-+.....+++.+...
T Consensus 60 ~~f~~vE~aLei~lh~~i~~fy~~----~~a------gdm~a~~~~~~l~LlQvWs~~Df~rLQeNliGHl~mqrrLK~~ 129 (181)
T 3ffv_A 60 QNVNAVERAFDIVIQPTIHTFYTT----QFA------GDMHAQFGDIKLTLLQTWSEDDFRRVQENLIGHLVTQKRLKLP 129 (181)
T ss_dssp SSCHHHHHHSSCCCCHHHHHHTSS----EEC------CCEEEEETTEEEEECCCCSHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred ccHHHHHHHhcCcccHHHHHHHhh----hhc------CCCcceeCCceeEEEecCCHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 378999999999999999999943 221 2234566654220 0000111222444444444455666655
Q ss_pred CCCceEEEeecCCCcceeEEEeccCCcEEEe
Q 046173 117 GRDKYVVLASSSTYSEKFFFLNCTNGQLYVG 147 (308)
Q Consensus 117 ~~~~~~~~aass~~~~k~~~l~~~~G~l~vg 147 (308)
+ =+|-|...-....+-++-.+|+|..-
T Consensus 130 P----T~FIg~td~e~~lIsv~N~sGeV~LE 156 (181)
T 3ffv_A 130 P----TLFIATLEEELEVISVCNLSGEVCKE 156 (181)
T ss_dssp C----EEEEEECSSTTEEEEEETTTCCEEEE
T ss_pred C----cEEEEEecCCCcEEEEECCCCeEEEE
Confidence 2 22222222235778888889998654
No 10
>1fad_A Protein (FADD protein); apoptosis, death domain; NMR {Mus musculus} SCOP: a.77.1.2
Probab=66.87 E-value=13 Score=28.11 Aligned_cols=62 Identities=15% Similarity=0.089 Sum_probs=47.6
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHhChhhHhhcCCCCCHHHHHHHHHHcCCCCC-HHHHHhhhhhC
Q 046173 1 MGCFDFYDDVKRHWDRFKKWLTENFPEAKATLRKGASEADIQELEKSLKVKLP-VPTRILYRFCD 64 (308)
Q Consensus 1 ~~~~~~~~~v~~~W~rIe~wL~~~~P~~~~~L~~gate~~I~~~E~~Lg~~LP-~d~r~lyr~hn 64 (308)
.||-|....+...+..|.+-+......+...| |.|+.+|+.+|....-.+- ..+..|..|.+
T Consensus 4 ~~~~~~~~~l~~~~~~ia~~lg~~Wk~Lar~L--g~~~~~I~~I~~~~~~d~~eq~~~mL~~W~~ 66 (99)
T 1fad_A 4 MAAPPGEAYLQVAFDIVCDNVGRDWKRLAREL--KVSEAKMDGIEEKYPRSLSERVRESLKVWKN 66 (99)
T ss_dssp -CCCTTHHHHHHHHHHHHHHHHHHHHHHHHHT--TCCHHHHHHHHHHCSSCHHHHHHHHHHHHHH
T ss_pred CCCCCCcccHHHHHHHHHHHHhhhHHHHHHHc--CCCHHHHHHHHHHCCCCHHHHHHHHHHHHHh
Confidence 47899999999999999999988888888887 7999999999988654443 33444444443
No 11
>4dxe_H ACP, acyl carrier protein; acyl-carrier-protein synthase, type II acid synthesis pathway; 2.51A {Staphylococcus aureus}
Probab=30.07 E-value=59 Score=24.72 Aligned_cols=45 Identities=18% Similarity=0.302 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHhChhhHhhcCCCCCH------------HHHHHHHHHcCCCCCHHH
Q 046173 12 RHWDRFKKWLTENFPEAKATLRKGASE------------ADIQELEKSLKVKLPVPT 56 (308)
Q Consensus 12 ~~W~rIe~wL~~~~P~~~~~L~~gate------------~~I~~~E~~Lg~~LP~d~ 56 (308)
.+-++|.+.+++.+.--.+.+.+.++= +-+.++|+.+|+++|++-
T Consensus 26 ei~~~l~~iiae~l~~~~~~I~~d~~l~~dLGlDSL~~veLi~~lE~~fgi~i~~~~ 82 (101)
T 4dxe_H 26 ENFDKVKDIIVDRLGVDADKVTEDASFKDDLGADSLDIAELVMELEDEFGTEIPDEE 82 (101)
T ss_dssp THHHHHHHHHHHTTCCCGGGCCTTCBTTTTSCCCHHHHHHHHHHHHHHTTCCCCHHH
T ss_pred HHHHHHHHHHHHHHCcChhhCCCCCcchhhcCCCcHHHHHHHHHHHHHHCCCCCHHH
Confidence 357788888888764433445544433 345789999999999875
No 12
>2kvc_A Putative uncharacterized protein; structural genomics, seattle structural genomi for infectious disease, ssgcid, unknown function; NMR {Mycobacterium tuberculosis}
Probab=22.84 E-value=1.6e+02 Score=23.09 Aligned_cols=38 Identities=21% Similarity=0.474 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHhChhh---------HhhcCCCCCHHHHHHHHHH
Q 046173 10 VKRHWDRFKKWLTENFPEA---------KATLRKGASEADIQELEKS 47 (308)
Q Consensus 10 v~~~W~rIe~wL~~~~P~~---------~~~L~~gate~~I~~~E~~ 47 (308)
|.....+|-+||+.-+|+- .+-|..-.|++||+++=+.
T Consensus 4 ~~~~l~siv~WLRaGYP~GVP~~Dy~PLlALL~r~Ltdeev~~Va~~ 50 (103)
T 2kvc_A 4 MNRFLTSIVAWLRAGYPEGIPPTDSFAVLALLCRRLSHDEVKAVANE 50 (103)
T ss_dssp HHHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHTTTSCHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHccCCCCCCCcchHHHHHHHhccCCHHHHHHHHHH
Confidence 4567889999999999983 3555666666666665543
No 13
>3cfu_A Uncharacterized lipoprotein YJHA; YJHA_bacsu, SR562, NESG, structural genomics, PSI-2, protein structure initiative; 2.40A {Bacillus subtilis}
Probab=22.48 E-value=2.3e+02 Score=23.31 Aligned_cols=67 Identities=18% Similarity=0.123 Sum_probs=45.3
Q ss_pred ecCCCCCcEEEecceEEEEeCCCceEEEEcCeeeeecCcccc----CCeeEEEEEEEEEecccCCCCCC--cEEEEecCc
Q 046173 226 INGMTFSSCLLQHRHWVIHAYNVVLSDVSGEAVIGMSCTPLP----GSSGSVRGSLMFVPARLADPKGS--PFEVEVAEF 299 (308)
Q Consensus 226 i~n~~~~~vqL~sRhW~I~d~~g~~~eV~G~GVVG~S~~~l~----t~~G~M~G~y~~~p~~l~~~~g~--~F~v~Ip~F 299 (308)
|+|.++.+...-.=.+.+.|++|+.-+-.. ...++ +..|. .|..+|+|...|. -|.|. .+.+..-+.
T Consensus 55 IeN~g~e~~~~s~~~F~L~d~dG~~~~~~~-~~~~~-~~~l~~g~L~pG~kvtG~ivFe-----VP~~~~k~~~L~y~p~ 127 (159)
T 3cfu_A 55 MENIGEDSISYNFIGFDLRDKNDQSVRPVF-SIEEK-GRILMGGTLVSGKKVTGVLSYV-----IPKGEQKHYTLVYNPF 127 (159)
T ss_dssp EEECSSSCEEEEGGGEEEECTTCCBCCCEE-CSTTT-TTBCCEEEECTTCEEEEEEEEE-----ESTTCGGGCEEEECHH
T ss_pred EEECCCCceeeCcccEEEEeCCCCEEecee-eeccc-CCcccccccCCCCEEEEEEEEE-----ECCCCCccEEEEEecC
Confidence 999999999998888999999998653221 11111 11232 3778999999997 45555 566665543
Done!