BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 046177
(272 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2A25|A Chain A, Crystal Structure Of Siah1 Sbd Bound To The Peptide
Ekpaavvapittg From Sip
Length = 193
Score = 90.5 bits (223), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 53/160 (33%), Positives = 83/160 (51%), Gaps = 7/160 (4%)
Query: 109 VAASLELPCKYQSYGCMGIYPYYSKLKHESQCIFRPYNCPYAGSECTVMGDIPYLVAHLK 168
VA S+ PCKY S GC P+ K HE C FRPY+CP G+ C G + ++ HL
Sbjct: 1 VANSVLFPCKYASSGCEITLPHTEKADHEELCEFRPYSCPCPGASCKWQGSLDAVMPHLM 60
Query: 169 DDHK-VDMHNGSTFNHRYVKQN-PHEVENATWMLTVFSCFGQYFCLHFEAFQ-LGMAPVY 225
HK + G N P V+ W++ + SCFG +F L E + +
Sbjct: 61 HQHKSITTLQGEDIVFLATDINLPGAVD---WVM-MQSCFGFHFMLVLEKQEKYDGHQQF 116
Query: 226 IAFLRFMGDDNESKNYSYSLEVGGNGRKMSWQGVPRSIRD 265
A ++ +G +++N++Y LE+ G+ R+++W+ PRSI +
Sbjct: 117 FAIVQLIGTRKQAENFAYRLELNGHRRRLTWEATPRSIHE 156
>pdb|2AN6|A Chain A, Protein-Peptide Complex
pdb|2AN6|B Chain B, Protein-Peptide Complex
pdb|2AN6|C Chain C, Protein-Peptide Complex
pdb|2AN6|D Chain D, Protein-Peptide Complex
Length = 191
Score = 89.0 bits (219), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 51/157 (32%), Positives = 82/157 (52%), Gaps = 7/157 (4%)
Query: 112 SLELPCKYQSYGCMGIYPYYSKLKHESQCIFRPYNCPYAGSECTVMGDIPYLVAHLKDDH 171
S+ PCKY S GC P+ K +HE C FRPY+CP G+ C G + ++ HL H
Sbjct: 2 SVLFPCKYASSGCEITLPHTEKAEHEELCEFRPYSCPCPGASCKWQGSLDAVMPHLMHQH 61
Query: 172 K-VDMHNGSTFNHRYVKQN-PHEVENATWMLTVFSCFGQYFCLHFEAFQ-LGMAPVYIAF 228
K + G N P V+ W++ + SCFG +F L E + + A
Sbjct: 62 KSITTLQGEDIVFLATDINLPGAVD---WVM-MQSCFGFHFMLVLEKQEKYDGHQQFFAI 117
Query: 229 LRFMGDDNESKNYSYSLEVGGNGRKMSWQGVPRSIRD 265
++ +G +++N++Y LE+ G+ R+++W+ PRSI +
Sbjct: 118 VQLIGTRKQAENFAYRLELNGHRRRLTWEATPRSIHE 154
>pdb|1K2F|A Chain A, Siah, Seven In Absentia Homolog
pdb|1K2F|B Chain B, Siah, Seven In Absentia Homolog
Length = 190
Score = 88.6 bits (218), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 51/157 (32%), Positives = 82/157 (52%), Gaps = 7/157 (4%)
Query: 112 SLELPCKYQSYGCMGIYPYYSKLKHESQCIFRPYNCPYAGSECTVMGDIPYLVAHLKDDH 171
S+ PCKY S GC P+ K +HE C FRPY+CP G+ C G + ++ HL H
Sbjct: 1 SVLFPCKYASSGCEITLPHTEKAEHEELCEFRPYSCPCPGASCKWQGSLDAVMPHLMHQH 60
Query: 172 K-VDMHNGSTFNHRYVKQN-PHEVENATWMLTVFSCFGQYFCLHFEAFQ-LGMAPVYIAF 228
K + G N P V+ W++ + SCFG +F L E + + A
Sbjct: 61 KSITTLQGEDIVFLATDINLPGAVD---WVM-MQSCFGFHFMLVLEKQEKYDGHQQFFAI 116
Query: 229 LRFMGDDNESKNYSYSLEVGGNGRKMSWQGVPRSIRD 265
++ +G +++N++Y LE+ G+ R+++W+ PRSI +
Sbjct: 117 VQLIGTRKQAENFAYRLELNGHRRRLTWEATPRSIHE 153
>pdb|2CT2|A Chain A, Solution Structure Of The Ring Domain Of The Tripartite
Motif Protein 32
Length = 88
Score = 35.4 bits (80), Expect = 0.037, Method: Composition-based stats.
Identities = 18/54 (33%), Positives = 29/54 (53%), Gaps = 13/54 (24%)
Query: 52 SVRELLECPVCLNA-----MYPPIHQCSNGHTLCSGCKPRVHN------RCPTC 94
++RE+LECP+C+ + + P + C GHT+C C ++ RCP C
Sbjct: 11 ALREVLECPICMESFTEEQLRPKLLHC--GHTICRQCLEKLLASSINGVRCPFC 62
>pdb|2XRY|A Chain A, X-Ray Structure Of Archaeal Class Ii Cpd Photolyase From
Methanosarcina Mazei
pdb|2XRZ|A Chain A, X-Ray Structure Of Archaeal Class Ii Cpd Photolyase From
Methanosarcina Mazei In Complex With Intact Cpd-Lesion
pdb|2XRZ|B Chain B, X-Ray Structure Of Archaeal Class Ii Cpd Photolyase From
Methanosarcina Mazei In Complex With Intact Cpd-Lesion
Length = 482
Score = 33.9 bits (76), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 25/108 (23%), Positives = 45/108 (41%), Gaps = 1/108 (0%)
Query: 19 DPPESEDLVEIVSESSVNDPAQIAL-KPNLTVSSSVRELLECPVCLNAMYPPIHQCSNGH 77
DP + +E++S ++ ++ K L S S + LE +CLN Y + NG+
Sbjct: 375 DPLWNASQMELLSTGKMHGYTRMYWAKKILEWSESPEKALEIAICLNDRYELDGRDPNGY 434
Query: 78 TLCSGCKPRVHNRCPTCRHELGNIRCLALEKVAASLELPCKYQSYGCM 125
+ VH+R R G IR ++ E ++ + Y +
Sbjct: 435 AGIAWSIGGVHDRAWGEREVTGKIRYMSYEGCKRKFDVKLYIEKYSAL 482
>pdb|1JM7|A Chain A, Solution Structure Of The Brca1/bard1 Ring-domain
Heterodimer
Length = 112
Score = 33.1 bits (74), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 15/56 (26%), Positives = 31/56 (55%), Gaps = 7/56 (12%)
Query: 49 VSSSVRELLECPVCLNAMYPPIHQCSNGHTLCSGCKPRVHN------RCPTCRHEL 98
V ++++++LECP+CL + P+ H C C ++ N +CP C++++
Sbjct: 14 VINAMQKILECPICLELIKEPVST-KCDHIFCKFCMLKLLNQKKGPSQCPLCKNDI 68
>pdb|2H0D|B Chain B, Structure Of A Bmi-1-Ring1b Polycomb Group Ubiquitin
Ligase Complex
Length = 100
Score = 31.2 bits (69), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 36/77 (46%), Gaps = 9/77 (11%)
Query: 32 ESSVNDPAQIALKPNLTVSSSVRELLECPVCLNAMYPPIHQCSNGHTLCSGC---KPRVH 88
+ ++ D +I + P S+ L CP+CL+ + + H C+ C R
Sbjct: 15 QEAITDGLEIVVSPR-----SLHSELMCPICLDMLKNTMTTKECLHRFCADCIITALRSG 69
Query: 89 NR-CPTCRHELGNIRCL 104
N+ CPTCR +L + R L
Sbjct: 70 NKECPTCRKKLVSKRSL 86
>pdb|2CKL|B Chain B, Ring1b-Bmi1 E3 Catalytic Domain Structure
Length = 165
Score = 31.2 bits (69), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 36/77 (46%), Gaps = 9/77 (11%)
Query: 32 ESSVNDPAQIALKPNLTVSSSVRELLECPVCLNAMYPPIHQCSNGHTLCSGC---KPRVH 88
+ ++ D +I + P S+ L CP+CL+ + + H C+ C R
Sbjct: 35 QEAITDGLEIVVSPR-----SLHSELMCPICLDMLKNTMTTKECLHRFCADCIITALRSG 89
Query: 89 NR-CPTCRHELGNIRCL 104
N+ CPTCR +L + R L
Sbjct: 90 NKECPTCRKKLVSKRSL 106
>pdb|3RPG|C Chain C, Bmi1RING1B-Ubch5c Complex Structure
Length = 121
Score = 30.8 bits (68), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 36/77 (46%), Gaps = 9/77 (11%)
Query: 32 ESSVNDPAQIALKPNLTVSSSVRELLECPVCLNAMYPPIHQCSNGHTLCSGC---KPRVH 88
+ ++ D +I + P S+ L CP+CL+ + + H C+ C R
Sbjct: 34 QEAITDGLEIVVSPR-----SLHSELMCPICLDMLKNTMTTKECLHRFCADCIITALRSG 88
Query: 89 NR-CPTCRHELGNIRCL 104
N+ CPTCR +L + R L
Sbjct: 89 NKECPTCRKKLVSKRSL 105
>pdb|3FL2|A Chain A, Crystal Structure Of The Ring Domain Of The E3
Ubiquitin- Protein Ligase Uhrf1
Length = 124
Score = 30.4 bits (67), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 32/81 (39%), Gaps = 12/81 (14%)
Query: 23 SEDLVEIVSESSVNDPAQIALKPNLTVSSSVRELLECPVCLNAMYPPIHQCSNGHTLCSG 82
+E L + + P Q+ L S V E +C C ++ PI H +C
Sbjct: 26 NEVLASLKDRPASGSPFQLFL-------SKVEETFQCICCQELVFRPITTVCQ-HNVCKD 77
Query: 83 CKPRVHN----RCPTCRHELG 99
C R CP CR++LG
Sbjct: 78 CLDRSFRAQVFSCPACRYDLG 98
>pdb|2ECV|A Chain A, Solution Structure Of The Zinc Finger, C3hc4 Type (Ring
Finger) Domain Of Tripartite Motif-Containing Protein 5
Length = 85
Score = 29.6 bits (65), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 29/62 (46%), Gaps = 12/62 (19%)
Query: 52 SVRELLECPVCLNAMYPPIHQCSNGHTLCSGCKPRVHNR---------CPTCR--HELGN 100
+V+E + CP+CL + P+ GH+ C C H + CP CR ++ N
Sbjct: 15 NVKEEVTCPICLELLTQPLSL-DCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQPEN 73
Query: 101 IR 102
IR
Sbjct: 74 IR 75
>pdb|3VC3|A Chain A, Crystal Structure Of Beta-Cyanoalanine Synthase K95a
Mutant In Soybean
pdb|3VC3|B Chain B, Crystal Structure Of Beta-Cyanoalanine Synthase K95a
Mutant In Soybean
pdb|3VC3|C Chain C, Crystal Structure Of Beta-Cyanoalanine Synthase K95a
Mutant In Soybean
pdb|3VC3|D Chain D, Crystal Structure Of Beta-Cyanoalanine Synthase K95a
Mutant In Soybean
pdb|3VC3|E Chain E, Crystal Structure Of Beta-Cyanoalanine Synthase K95a
Mutant In Soybean
pdb|3VC3|F Chain F, Crystal Structure Of Beta-Cyanoalanine Synthase K95a
Mutant In Soybean
Length = 344
Score = 29.3 bits (64), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 23/39 (58%)
Query: 14 KPEVIDPPESEDLVEIVSESSVNDPAQIALKPNLTVSSS 52
KP+++D E ++E+ SE +VN +ALK L V S
Sbjct: 251 KPDILDLDVMEKVLEVSSEDAVNMARVLALKEGLMVGIS 289
>pdb|3VBE|A Chain A, Crystal Structure Of Beta-Cyanoalanine Synthase In Soybean
pdb|3VBE|B Chain B, Crystal Structure Of Beta-Cyanoalanine Synthase In Soybean
pdb|3VBE|C Chain C, Crystal Structure Of Beta-Cyanoalanine Synthase In Soybean
pdb|3VBE|D Chain D, Crystal Structure Of Beta-Cyanoalanine Synthase In Soybean
Length = 344
Score = 29.3 bits (64), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 23/39 (58%)
Query: 14 KPEVIDPPESEDLVEIVSESSVNDPAQIALKPNLTVSSS 52
KP+++D E ++E+ SE +VN +ALK L V S
Sbjct: 251 KPDILDLDVMEKVLEVSSEDAVNMARVLALKEGLMVGIS 289
>pdb|2OWA|A Chain A, Crystal Structure Of Putative Gtpase Activating Protein
For Adp Ribosylation Factor From Cryptosporidium Parvum
(Cgd5_1040)
pdb|2OWA|B Chain B, Crystal Structure Of Putative Gtpase Activating Protein
For Adp Ribosylation Factor From Cryptosporidium Parvum
(Cgd5_1040)
Length = 138
Score = 28.9 bits (63), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 32/65 (49%), Gaps = 4/65 (6%)
Query: 192 EVENATWMLTVFSCFGQYFCLHFEAFQLGMAPVYIAFLRFMGDDNESKNYSYSLEVGGNG 251
E N TW+ F+ F CL+ + M V+I+F+R D + +++GGNG
Sbjct: 43 ESRNPTWLSLSFAVF---ICLNCSSDHRKMG-VHISFVRSSDLDKFTPIQLVRMDIGGNG 98
Query: 252 RKMSW 256
R ++
Sbjct: 99 RARNY 103
>pdb|2Y43|A Chain A, Rad18 Ubiquitin Ligase Ring Domain Structure
pdb|2Y43|B Chain B, Rad18 Ubiquitin Ligase Ring Domain Structure
Length = 99
Score = 28.9 bits (63), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 27/57 (47%), Gaps = 11/57 (19%)
Query: 45 PNLTVSSSVRELLECPVCLN----AMYPPIHQCSNGHTLCSGCKPRV---HNRCPTC 94
P L V ++ +LL C +C AM P QCS H CS C + +CPTC
Sbjct: 11 PGLAVMKTIDDLLRCGICFEYFNIAMIIP--QCS--HNYCSLCIRKFLSYKTQCPTC 63
>pdb|4GSK|A Chain A, Crystal Structure Of An Atg7-Atg10 Crosslinked Complex
pdb|4GSK|B Chain B, Crystal Structure Of An Atg7-Atg10 Crosslinked Complex
Length = 615
Score = 28.1 bits (61), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 10/16 (62%), Positives = 14/16 (87%)
Query: 149 YAGSECTVMGDIPYLV 164
Y+GSE TV+GDIP+ +
Sbjct: 536 YSGSETTVLGDIPHQI 551
>pdb|3VH2|A Chain A, Crystal Structure Of Saccharomyces Cerevisiae Atg7 (1-613)
Length = 616
Score = 28.1 bits (61), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 10/16 (62%), Positives = 14/16 (87%)
Query: 149 YAGSECTVMGDIPYLV 164
Y+GSE TV+GDIP+ +
Sbjct: 537 YSGSETTVLGDIPHQI 552
>pdb|4GSL|A Chain A, Crystal Structure Of An Atg7-Atg3 Crosslinked Complex
pdb|4GSL|B Chain B, Crystal Structure Of An Atg7-Atg3 Crosslinked Complex
Length = 615
Score = 28.1 bits (61), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 10/16 (62%), Positives = 14/16 (87%)
Query: 149 YAGSECTVMGDIPYLV 164
Y+GSE TV+GDIP+ +
Sbjct: 536 YSGSETTVLGDIPHQI 551
>pdb|3RUI|A Chain A, Crystal Structure Of Atg7c-Atg8 Complex
Length = 340
Score = 28.1 bits (61), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 10/16 (62%), Positives = 14/16 (87%)
Query: 149 YAGSECTVMGDIPYLV 164
Y+GSE TV+GDIP+ +
Sbjct: 244 YSGSETTVLGDIPHQI 259
>pdb|3VH1|A Chain A, Crystal Structure Of Saccharomyces Cerevisiae Atg7 (1-595)
Length = 598
Score = 28.1 bits (61), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 10/16 (62%), Positives = 14/16 (87%)
Query: 149 YAGSECTVMGDIPYLV 164
Y+GSE TV+GDIP+ +
Sbjct: 537 YSGSETTVLGDIPHQI 552
>pdb|3T7E|A Chain A, Atg8 Transfer From Atg7 To Atg3: A Distinctive E1-E2
Architecture And Mechanism In The Autophagy Pathway
Length = 344
Score = 27.7 bits (60), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 10/16 (62%), Positives = 14/16 (87%)
Query: 149 YAGSECTVMGDIPYLV 164
Y+GSE TV+GDIP+ +
Sbjct: 248 YSGSETTVLGDIPHQI 263
>pdb|3VH3|A Chain A, Crystal Structure Of Atg7ctd-Atg8 Complex
pdb|3VH4|A Chain A, Crystal Structure Of Atg7ctd-Atg8-Mgatp Complex
Length = 340
Score = 27.7 bits (60), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 10/16 (62%), Positives = 14/16 (87%)
Query: 149 YAGSECTVMGDIPYLV 164
Y+GSE TV+GDIP+ +
Sbjct: 244 YSGSETTVLGDIPHQI 259
>pdb|2EGP|A Chain A, Solution Structure Of The Ring-Finger Domain From Human
Tripartite Motif Protein 34
Length = 79
Score = 27.7 bits (60), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Query: 50 SSSVRELLECPVCLNAMYPPIHQCSNGHTLCSGC 83
S +V+E + CP+CL + P+ GH+LC C
Sbjct: 6 SGNVQEEVTCPICLELLTEPLSL-DCGHSLCRAC 38
>pdb|2YSL|A Chain A, Solution Structure Of The Ring Domain (1-66) From
Tripartite Motif-containing Protein 31
Length = 73
Score = 27.7 bits (60), Expect = 6.7, Method: Composition-based stats.
Identities = 13/51 (25%), Positives = 25/51 (49%), Gaps = 7/51 (13%)
Query: 51 SSVRELLECPVCLNAMYPPIHQCSNGHTLCSGCKPRVHN------RCPTCR 95
+ ++E + CP+CL+ + P+ GH C C ++ +CP C+
Sbjct: 15 NKLQEEVICPICLDILQKPV-TIDCGHNFCLKCITQIGETSCGFFKCPLCK 64
>pdb|2BTO|A Chain A, Structure Of Btuba From Prosthecobacter Dejongeii
pdb|2BTO|B Chain B, Structure Of Btuba From Prosthecobacter Dejongeii
pdb|2BTQ|A Chain A, Structure Of Btubab Heterodimer From Prosthecobacter
Dejongeii
Length = 473
Score = 27.7 bits (60), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 26/48 (54%)
Query: 10 DLRNKPEVIDPPESEDLVEIVSESSVNDPAQIALKPNLTVSSSVRELL 57
DL ++ I+ P +DL +++E+ A + LTV S+RELL
Sbjct: 213 DLAHRKWNIESPTVDDLNLLITEALAGITASMRFSGFLTVEISLRELL 260
>pdb|3NG2|A Chain A, Crystal Structure Of The Rnf4 Ring Domain Dimer
pdb|3NG2|B Chain B, Crystal Structure Of The Rnf4 Ring Domain Dimer
Length = 71
Score = 27.3 bits (59), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 32/74 (43%), Gaps = 19/74 (25%)
Query: 39 AQIALKPNLTVSSSVRELLECPVCLNAMYPPIHQCSN-------GHTLCSGC---KPRVH 88
L+P+ TVS CP+C++ Y I Q GH CS C +
Sbjct: 1 GTTGLRPSGTVS--------CPICMDG-YSEIVQNGRLIVSTECGHVFCSQCLRDSLKNA 51
Query: 89 NRCPTCRHELGNIR 102
N CPTCR ++ + R
Sbjct: 52 NTCPTCRKKINHKR 65
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.137 0.442
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,917,640
Number of Sequences: 62578
Number of extensions: 361296
Number of successful extensions: 936
Number of sequences better than 100.0: 40
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 25
Number of HSP's that attempted gapping in prelim test: 917
Number of HSP's gapped (non-prelim): 41
length of query: 272
length of database: 14,973,337
effective HSP length: 97
effective length of query: 175
effective length of database: 8,903,271
effective search space: 1558072425
effective search space used: 1558072425
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (24.3 bits)