Query 046177
Match_columns 272
No_of_seqs 287 out of 1596
Neff 7.3
Searched_HMMs 29240
Date Mon Mar 25 16:25:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046177.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/046177hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2a25_A Ubiquitin ligase SIAH1; 100.0 3.1E-36 1.1E-40 257.8 10.9 160 109-271 1-162 (193)
2 3hcs_A TNF receptor-associated 99.9 1.9E-23 6.6E-28 174.5 7.2 124 43-173 5-135 (170)
3 3hct_A TNF receptor-associated 99.7 2.7E-18 9.3E-23 135.1 4.5 98 44-144 6-110 (118)
4 3knv_A TNF receptor-associated 99.7 7.2E-18 2.4E-22 137.0 1.1 90 49-141 24-130 (141)
5 1rmd_A RAG1; V(D)J recombinati 99.6 2.1E-17 7.3E-22 129.3 1.6 91 50-143 17-115 (116)
6 3ztg_A E3 ubiquitin-protein li 99.2 1.1E-11 3.8E-16 92.5 3.4 67 49-116 6-82 (92)
7 1t1h_A Gspef-atpub14, armadill 99.1 1.5E-11 5.2E-16 89.0 2.2 63 51-114 3-72 (78)
8 1wgm_A Ubiquitin conjugation f 99.1 8.1E-11 2.8E-15 89.4 4.0 64 50-114 16-86 (98)
9 2egp_A Tripartite motif-contai 99.1 3.1E-11 1E-15 87.3 1.5 51 49-100 5-65 (79)
10 2kr4_A Ubiquitin conjugation f 99.0 7.1E-11 2.4E-15 87.4 3.1 63 50-113 8-76 (85)
11 2ecv_A Tripartite motif-contai 99.0 9.6E-11 3.3E-15 85.5 2.2 59 49-108 12-82 (85)
12 2y43_A E3 ubiquitin-protein li 99.0 4.8E-11 1.7E-15 90.3 -0.2 66 49-114 15-86 (99)
13 2kre_A Ubiquitin conjugation f 99.0 1.7E-10 5.7E-15 88.0 2.4 64 50-114 23-92 (100)
14 1jm7_B BARD1, BRCA1-associated 99.0 1.2E-10 4E-15 91.0 1.4 65 49-113 15-83 (117)
15 2djb_A Polycomb group ring fin 99.0 2.8E-10 9.5E-15 81.1 3.1 52 49-100 8-62 (72)
16 2ecy_A TNF receptor-associated 98.9 2.6E-10 8.8E-15 79.8 2.7 52 48-100 7-62 (66)
17 2csy_A Zinc finger protein 183 98.9 4.1E-10 1.4E-14 82.0 3.9 61 50-111 9-74 (81)
18 2ecw_A Tripartite motif-contai 98.9 1.1E-10 3.6E-15 85.3 0.4 60 49-109 12-83 (85)
19 1bor_A Transcription factor PM 98.9 5.1E-10 1.7E-14 76.1 3.8 47 53-100 3-49 (56)
20 2ysl_A Tripartite motif-contai 98.9 4.7E-10 1.6E-14 79.8 3.1 51 49-100 13-69 (73)
21 3lrq_A E3 ubiquitin-protein li 98.9 1.1E-10 3.7E-15 88.8 -0.5 62 50-111 16-84 (100)
22 3fl2_A E3 ubiquitin-protein li 98.9 1.2E-10 4.1E-15 91.8 -0.5 64 50-114 46-117 (124)
23 2yur_A Retinoblastoma-binding 98.9 6.7E-10 2.3E-14 79.6 3.3 49 50-99 9-63 (74)
24 4ayc_A E3 ubiquitin-protein li 98.9 2.9E-10 9.9E-15 91.4 1.5 58 52-110 49-110 (138)
25 2ckl_A Polycomb group ring fin 98.9 2.6E-10 9E-15 87.6 0.8 65 50-114 9-83 (108)
26 1z6u_A NP95-like ring finger p 98.9 2.6E-10 8.7E-15 93.2 -0.1 65 49-114 71-143 (150)
27 2ckl_B Ubiquitin ligase protei 98.8 6.3E-10 2.1E-14 91.9 1.9 64 51-114 49-120 (165)
28 2d8t_A Dactylidin, ring finger 98.8 1.5E-09 5.2E-14 77.0 2.7 48 51-99 10-60 (71)
29 1e4u_A Transcriptional repress 98.8 1.6E-09 5.3E-14 78.9 2.6 51 50-100 5-62 (78)
30 2c2l_A CHIP, carboxy terminus 98.8 2.4E-09 8.2E-14 94.6 3.4 63 51-114 203-272 (281)
31 2ysj_A Tripartite motif-contai 98.8 3E-09 1E-13 73.5 3.0 45 49-94 13-63 (63)
32 3l11_A E3 ubiquitin-protein li 98.8 2.3E-09 7.8E-14 83.2 2.4 48 51-99 10-61 (115)
33 2yu4_A E3 SUMO-protein ligase 98.8 1.7E-09 5.7E-14 81.3 1.5 63 52-114 3-80 (94)
34 2ct2_A Tripartite motif protei 98.7 3.4E-09 1.2E-13 77.9 2.7 50 50-100 9-68 (88)
35 2ea6_A Ring finger protein 4; 98.7 2E-09 6.9E-14 75.4 1.4 50 50-99 9-67 (69)
36 1jm7_A BRCA1, breast cancer ty 98.7 6.6E-10 2.3E-14 85.5 -1.3 49 51-100 16-70 (112)
37 2ecj_A Tripartite motif-contai 98.7 6E-09 2E-13 70.5 2.8 46 48-94 7-58 (58)
38 2f42_A STIP1 homology and U-bo 98.7 6E-09 2.1E-13 87.4 2.4 64 50-114 100-170 (179)
39 3ng2_A RNF4, snurf, ring finge 98.7 2.7E-09 9.4E-14 75.3 0.3 49 52-100 6-63 (71)
40 1x4j_A Ring finger protein 38; 98.6 1.7E-08 5.7E-13 72.3 3.4 49 52-100 19-72 (75)
41 1iym_A EL5; ring-H2 finger, ub 98.6 2.3E-08 8E-13 66.9 3.6 47 53-99 2-54 (55)
42 2ect_A Ring finger protein 126 98.6 2.8E-08 9.5E-13 71.5 4.3 51 50-100 9-64 (78)
43 2ecn_A Ring finger protein 141 98.6 9.1E-09 3.1E-13 72.5 1.0 49 50-100 9-60 (70)
44 1g25_A CDK-activating kinase a 98.6 7.4E-09 2.5E-13 72.0 0.3 46 55-100 2-55 (65)
45 1chc_A Equine herpes virus-1 r 98.6 2.4E-08 8.2E-13 69.8 3.0 46 55-100 4-52 (68)
46 2xeu_A Ring finger protein 4; 98.6 6.6E-09 2.3E-13 71.6 -0.1 46 55-100 2-56 (64)
47 4ic3_A E3 ubiquitin-protein li 98.6 4.3E-09 1.5E-13 75.5 -1.1 48 51-100 19-67 (74)
48 2ep4_A Ring finger protein 24; 98.6 2.9E-08 1E-12 70.6 3.0 51 50-100 9-64 (74)
49 2kiz_A E3 ubiquitin-protein li 98.5 3.5E-08 1.2E-12 69.3 3.1 50 51-100 9-63 (69)
50 2ecg_A Baculoviral IAP repeat- 98.5 6.8E-09 2.3E-13 74.6 -1.1 48 51-100 20-68 (75)
51 2ecm_A Ring finger and CHY zin 98.5 3.3E-08 1.1E-12 66.1 2.4 44 55-99 4-54 (55)
52 2ea5_A Cell growth regulator w 98.4 1.7E-07 6E-12 66.1 4.0 47 52-100 11-58 (68)
53 2l0b_A E3 ubiquitin-protein li 98.4 7.7E-08 2.6E-12 71.6 1.8 47 52-99 36-88 (91)
54 4ap4_A E3 ubiquitin ligase RNF 98.3 6.5E-08 2.2E-12 75.9 -0.0 46 54-100 5-60 (133)
55 3htk_C E3 SUMO-protein ligase 98.3 1E-07 3.5E-12 84.0 0.8 63 51-113 176-248 (267)
56 2yho_A E3 ubiquitin-protein li 98.3 5.3E-08 1.8E-12 70.8 -1.1 47 52-100 14-61 (79)
57 1v87_A Deltex protein 2; ring- 98.2 3.6E-07 1.2E-11 70.4 1.9 45 56-100 25-94 (114)
58 2ecl_A Ring-box protein 2; RNF 98.1 6.3E-07 2.2E-11 65.2 1.6 45 55-99 14-75 (81)
59 3t6p_A Baculoviral IAP repeat- 98.1 6.1E-07 2.1E-11 82.5 1.5 48 51-100 290-338 (345)
60 2y1n_A E3 ubiquitin-protein li 98.0 1.1E-06 3.6E-11 81.9 1.7 47 53-100 329-379 (389)
61 4ap4_A E3 ubiquitin ligase RNF 98.0 1E-06 3.5E-11 68.9 0.9 48 53-100 69-125 (133)
62 2yre_A F-box only protein 30; 98.0 2.4E-06 8.3E-11 64.3 2.3 54 114-170 37-90 (100)
63 3dpl_R Ring-box protein 1; ubi 97.9 1.9E-06 6.4E-11 66.1 0.8 45 55-99 36-100 (106)
64 2vje_A E3 ubiquitin-protein li 97.9 1.9E-06 6.7E-11 59.8 0.4 46 55-100 7-57 (64)
65 2vje_B MDM4 protein; proto-onc 97.8 2.6E-06 8.8E-11 59.0 0.3 46 55-100 6-56 (63)
66 1wim_A KIAA0161 protein; ring 97.8 3.3E-06 1.1E-10 62.9 -0.0 43 55-97 4-61 (94)
67 2yuc_A TNF receptor-associated 97.7 1.5E-05 5.2E-10 56.8 3.0 50 113-169 15-65 (76)
68 2bay_A PRE-mRNA splicing facto 97.7 8.4E-06 2.9E-10 56.1 0.8 45 56-100 3-50 (61)
69 4a0k_B E3 ubiquitin-protein li 97.6 8.9E-06 3E-10 63.4 0.0 44 56-99 48-111 (117)
70 2yre_A F-box only protein 30; 97.5 2.2E-05 7.6E-10 59.0 1.0 57 90-148 39-98 (100)
71 3vk6_A E3 ubiquitin-protein li 97.2 0.00013 4.5E-09 54.8 2.4 80 58-173 3-87 (101)
72 2d9k_A FLN29 gene product; zin 96.8 0.00021 7.1E-09 50.7 -0.1 50 114-171 17-66 (75)
73 2yuc_A TNF receptor-associated 96.7 0.00095 3.3E-08 47.3 3.2 37 109-149 39-75 (76)
74 3hcs_A TNF receptor-associated 96.7 0.001 3.4E-08 54.5 3.4 50 112-169 108-158 (170)
75 2d8s_A Cellular modulator of i 96.7 0.001 3.6E-08 48.0 3.0 47 53-99 12-69 (80)
76 3k1l_B Fancl; UBC, ring, RWD, 96.3 0.0011 3.8E-08 60.5 1.4 46 54-99 306-372 (381)
77 2ct0_A Non-SMC element 1 homol 95.9 0.0063 2.1E-07 43.3 3.5 45 54-99 13-63 (74)
78 2jun_A Midline-1; B-BOX, TRIM, 94.1 0.013 4.4E-07 43.5 0.8 32 55-86 2-35 (101)
79 3hct_A TNF receptor-associated 93.4 0.023 7.8E-07 43.5 1.2 60 105-173 44-109 (118)
80 1rmd_A RAG1; V(D)J recombinati 92.7 0.088 3E-06 39.8 3.6 76 89-170 24-112 (116)
81 2cs3_A Protein C14ORF4, MY039 91.9 0.39 1.3E-05 34.4 5.7 73 53-167 12-87 (93)
82 2eod_A TNF receptor-associated 91.3 0.13 4.4E-06 34.3 2.8 48 115-170 11-60 (66)
83 2d9k_A FLN29 gene product; zin 90.8 0.083 2.8E-06 36.9 1.4 33 131-167 3-36 (75)
84 2yt9_A Zinc finger-containing 89.7 0.26 9E-06 34.8 3.4 52 114-173 35-91 (95)
85 1vyx_A ORF K3, K3RING; zinc-bi 88.7 0.19 6.5E-06 33.8 1.9 46 54-99 4-58 (60)
86 1wjp_A Zinc finger protein 295 88.4 0.45 1.5E-05 34.6 4.0 52 114-173 42-95 (107)
87 2rpc_A Zinc finger protein ZIC 88.3 1.3 4.4E-05 34.2 6.8 121 43-172 12-147 (155)
88 2dlq_A GLI-kruppel family memb 88.3 0.62 2.1E-05 34.3 4.8 107 55-173 6-120 (124)
89 3knv_A TNF receptor-associated 87.8 0.15 5.3E-06 40.3 1.1 29 142-172 102-131 (141)
90 1z60_A TFIIH basal transcripti 86.6 0.27 9.3E-06 33.2 1.6 37 58-94 17-58 (59)
91 2ee8_A Protein ODD-skipped-rel 86.5 1.9 6.4E-05 30.8 6.4 52 114-173 45-99 (106)
92 2dmd_A Zinc finger protein 64, 85.9 0.74 2.5E-05 32.4 3.8 52 114-173 36-90 (96)
93 2ct7_A Ring finger protein 31; 84.5 0.72 2.5E-05 33.2 3.2 32 56-87 25-61 (86)
94 1wff_A Riken cDNA 2810002D23 p 83.5 2.7 9.2E-05 30.3 5.7 42 54-96 23-66 (85)
95 2jmo_A Parkin; IBR, E3 ligase, 83.4 1.2 4.2E-05 31.5 4.0 39 56-96 25-75 (80)
96 3nw0_A Non-structural maintena 83.2 0.54 1.9E-05 40.5 2.4 45 55-100 179-229 (238)
97 2dlq_A GLI-kruppel family memb 82.8 2.1 7.2E-05 31.3 5.3 77 89-173 8-92 (124)
98 2jne_A Hypothetical protein YF 82.6 0.36 1.2E-05 35.8 0.8 38 57-99 33-72 (101)
99 1wg2_A Zinc finger (AN1-like) 82.5 2.2 7.6E-05 29.1 4.7 44 55-98 14-57 (64)
100 2kmk_A Zinc finger protein GFI 82.4 1.2 4.2E-05 30.0 3.6 74 90-171 3-81 (82)
101 2cup_A Skeletal muscle LIM-pro 79.2 0.88 3E-05 33.1 2.0 45 55-99 32-77 (101)
102 2drp_A Protein (tramtrack DNA- 78.2 1.8 6.1E-05 28.1 3.2 45 124-172 16-65 (66)
103 2dmi_A Teashirt homolog 3; zin 78.0 2.2 7.5E-05 31.0 3.9 39 131-173 66-106 (115)
104 3m62_A Ubiquitin conjugation f 77.8 1 3.5E-05 46.2 2.6 62 51-113 886-954 (968)
105 1wfp_A Zinc finger (AN1-like) 77.7 6.7 0.00023 27.5 6.0 43 55-97 24-66 (74)
106 2j7j_A Transcription factor II 77.6 2.2 7.5E-05 28.8 3.6 77 90-171 3-85 (85)
107 2adr_A ADR1; transcription reg 75.6 4.8 0.00016 25.3 4.7 47 124-174 8-57 (60)
108 2gli_A Protein (five-finger GL 75.4 5.3 0.00018 30.4 5.7 47 123-171 104-154 (155)
109 1wfh_A Zinc finger (AN1-like) 75.3 3.3 0.00011 28.2 3.8 41 56-96 15-55 (64)
110 2csh_A Zinc finger protein 297 74.9 2.9 0.0001 30.0 3.9 52 113-172 36-90 (110)
111 2ctd_A Zinc finger protein 512 74.9 2.5 8.6E-05 30.4 3.4 55 110-172 30-87 (96)
112 2ct1_A Transcriptional repress 74.3 3.4 0.00011 27.7 3.8 52 114-173 15-71 (77)
113 1wfl_A Zinc finger protein 216 73.6 5.7 0.00019 27.8 4.8 41 56-96 25-65 (74)
114 1a1h_A QGSR zinc finger peptid 70.5 4.3 0.00015 27.7 3.7 52 112-171 32-86 (90)
115 1llm_C Chimera of ZIF23-GCN4; 70.1 0.28 9.4E-06 34.4 -2.8 75 90-172 5-83 (88)
116 3uk3_C Zinc finger protein 217 69.9 3.5 0.00012 25.6 2.9 45 124-172 10-57 (57)
117 2ko5_A Ring finger protein Z; 69.5 1.2 3.9E-05 32.9 0.4 47 52-100 24-73 (99)
118 2jrp_A Putative cytoplasmic pr 69.1 1.8 6.1E-05 31.0 1.4 38 57-99 3-42 (81)
119 2xqn_T Testin, TESS; metal-bin 68.0 1.8 6.1E-05 32.8 1.3 45 55-99 29-74 (126)
120 2eod_A TNF receptor-associated 68.0 2.4 8.3E-05 27.7 1.8 28 138-169 4-31 (66)
121 1bbo_A Human enhancer-binding 67.1 7.1 0.00024 24.1 4.0 45 124-172 7-54 (57)
122 2i13_A AART; DNA binding, zinc 66.5 4.3 0.00015 32.3 3.4 75 90-172 79-158 (190)
123 1weo_A Cellulose synthase, cat 65.3 2.8 9.5E-05 30.5 1.7 43 57-99 17-69 (93)
124 2lt7_A Transcriptional regulat 65.3 3.5 0.00012 31.6 2.5 77 90-174 24-105 (133)
125 3lqh_A Histone-lysine N-methyl 64.6 6.3 0.00022 32.4 4.1 43 58-100 4-66 (183)
126 1x5w_A Zinc finger protein 64, 64.4 5.9 0.0002 25.9 3.3 46 124-173 15-63 (70)
127 1ubd_C Protein (YY1 zinc finge 64.3 3.2 0.00011 30.4 2.0 107 55-172 4-119 (124)
128 1m3v_A FLIN4, fusion of the LI 64.3 2.1 7.3E-05 32.4 1.1 45 55-100 31-81 (122)
129 2ebt_A Krueppel-like factor 5; 64.1 9.3 0.00032 26.5 4.5 51 114-170 45-98 (100)
130 1iml_A CRIP, cysteine rich int 63.3 4.1 0.00014 27.8 2.3 43 55-98 26-71 (76)
131 2d9h_A Zinc finger protein 692 61.9 4.4 0.00015 27.1 2.3 47 124-174 13-65 (78)
132 2lv2_A Insulinoma-associated p 61.5 9.5 0.00033 26.9 4.1 46 124-173 34-82 (85)
133 2jr6_A UPF0434 protein NMA0874 61.0 3.7 0.00013 28.3 1.7 32 51-85 3-34 (68)
134 2jny_A Uncharacterized BCR; st 60.7 3.3 0.00011 28.5 1.4 34 49-85 3-36 (67)
135 2gli_A Protein (five-finger GL 60.6 11 0.00037 28.6 4.6 58 111-172 64-124 (155)
136 2gqj_A Zinc finger protein KIA 58.6 3.8 0.00013 29.2 1.5 56 111-174 21-81 (98)
137 2cot_A Zinc finger protein 435 58.1 18 0.00061 23.9 4.9 45 124-172 24-71 (77)
138 1joc_A EEA1, early endosomal a 57.4 5.1 0.00018 30.8 2.1 32 56-87 69-103 (125)
139 2i13_A AART; DNA binding, zinc 57.2 7.2 0.00025 30.9 3.1 51 114-172 77-130 (190)
140 2jtn_A LIM domain-binding prot 56.7 4.1 0.00014 33.0 1.6 13 57-69 61-73 (182)
141 2yw8_A RUN and FYVE domain-con 56.6 7.1 0.00024 27.5 2.6 32 55-86 18-52 (82)
142 1z2q_A LM5-1; membrane protein 56.5 7.5 0.00026 27.5 2.8 33 54-86 19-54 (84)
143 2rpc_A Zinc finger protein ZIC 56.0 21 0.00073 26.9 5.6 52 115-172 63-117 (155)
144 1x68_A FHL5 protein; four-and- 55.7 8.6 0.00029 26.1 2.9 39 55-93 34-73 (76)
145 1x6e_A Zinc finger protein 24; 55.1 8.7 0.0003 25.2 2.8 51 114-172 14-67 (72)
146 2rgt_A Fusion of LIM/homeobox 54.9 4.9 0.00017 32.1 1.7 45 54-99 31-76 (169)
147 2xjy_A Rhombotin-2; oncoprotei 54.8 3.1 0.00011 31.6 0.5 45 54-99 27-77 (131)
148 1x4u_A Zinc finger, FYVE domai 54.7 8.3 0.00028 27.3 2.7 33 54-86 12-47 (84)
149 1vfy_A Phosphatidylinositol-3- 54.6 7.9 0.00027 26.6 2.5 29 58-86 13-44 (73)
150 3i2d_A E3 SUMO-protein ligase 54.4 6.7 0.00023 35.9 2.7 60 54-113 247-316 (371)
151 2vrw_B P95VAV, VAV1, proto-onc 54.0 6.8 0.00023 35.6 2.8 35 54-88 355-393 (406)
152 1x61_A Thyroid receptor intera 52.4 3.3 0.00011 27.9 0.3 37 56-92 33-69 (72)
153 1wfk_A Zinc finger, FYVE domai 51.9 10 0.00035 27.2 2.9 32 55-86 8-42 (88)
154 2jp9_A Wilms tumor 1; DNA bind 51.8 17 0.00058 26.0 4.2 8 161-168 80-87 (119)
155 1tf6_A Protein (transcription 51.6 25 0.00084 27.6 5.5 111 54-172 10-131 (190)
156 1x3c_A Zinc finger protein 292 51.4 11 0.00038 26.2 2.8 29 142-172 25-54 (73)
157 2wbt_A B-129; zinc finger; 2.7 51.0 17 0.00059 26.6 4.2 54 111-173 71-126 (129)
158 2wbs_A Krueppel-like factor 4; 50.6 8.1 0.00028 26.2 2.1 43 123-169 42-87 (89)
159 2js4_A UPF0434 protein BB2007; 49.8 6.5 0.00022 27.2 1.4 31 51-84 3-33 (70)
160 4fo9_A E3 SUMO-protein ligase 49.7 8.8 0.0003 35.0 2.7 59 54-112 213-281 (360)
161 2lce_A B-cell lymphoma 6 prote 49.2 24 0.00084 22.9 4.4 45 124-172 23-70 (74)
162 1x6h_A Transcriptional repress 48.8 25 0.00085 23.4 4.5 53 115-175 16-75 (86)
163 2hf1_A Tetraacyldisaccharide-1 47.8 6.1 0.00021 27.2 1.0 31 51-84 3-33 (68)
164 1dvp_A HRS, hepatocyte growth 47.7 9 0.00031 32.1 2.3 32 55-86 160-194 (220)
165 1wd2_A Ariadne-1 protein homol 47.3 8.6 0.00029 25.6 1.7 36 57-98 7-44 (60)
166 1tf6_A Protein (transcription 47.1 20 0.0007 28.1 4.3 44 124-169 112-158 (190)
167 2fiy_A Protein FDHE homolog; F 46.7 8 0.00027 34.5 1.9 44 54-97 180-231 (309)
168 3t7l_A Zinc finger FYVE domain 46.6 10 0.00035 27.3 2.1 33 55-87 19-54 (90)
169 2jp9_A Wilms tumor 1; DNA bind 46.4 17 0.00059 25.9 3.5 75 89-169 37-118 (119)
170 2dlk_A Novel protein; ZF-C2H2 45.9 23 0.00077 23.2 3.8 48 123-172 14-65 (79)
171 1rut_X Flinc4, fusion protein 45.8 2.6 9E-05 34.4 -1.3 44 55-99 31-80 (188)
172 2kpi_A Uncharacterized protein 45.6 8.4 0.00029 25.3 1.4 31 49-84 3-35 (56)
173 2gmg_A Hypothetical protein PF 45.1 11 0.00036 28.3 2.0 24 72-99 69-95 (105)
174 2pk7_A Uncharacterized protein 45.0 6.5 0.00022 27.1 0.8 31 51-84 3-33 (69)
175 2eln_A Zinc finger protein 406 44.8 19 0.00063 21.2 2.8 25 143-169 8-33 (38)
176 2a25_A Ubiquitin ligase SIAH1; 44.2 8.5 0.00029 31.7 1.6 46 94-139 16-61 (193)
177 1zw8_A Zinc-responsive transcr 43.3 25 0.00084 23.3 3.6 53 115-171 2-64 (64)
178 2epa_A Krueppel-like factor 10 42.9 25 0.00085 22.7 3.6 50 115-168 18-70 (72)
179 3pwf_A Rubrerythrin; non heme 42.9 12 0.00042 30.2 2.3 10 89-98 154-163 (170)
180 1ubd_C Protein (YY1 zinc finge 42.8 24 0.0008 25.5 3.8 75 90-172 7-89 (124)
181 1x4w_A Hypothetical protein FL 42.5 12 0.0004 25.7 1.8 40 57-96 16-58 (67)
182 1y02_A CARP2, FYVE-ring finger 41.9 12 0.00042 28.6 2.0 42 55-96 18-65 (120)
183 3zyq_A Hepatocyte growth facto 40.8 13 0.00044 31.4 2.2 30 57-86 165-197 (226)
184 1wfe_A Riken cDNA 2310008M20 p 40.7 20 0.00068 25.7 2.9 40 53-93 22-64 (86)
185 2ee8_A Protein ODD-skipped-rel 40.6 49 0.0017 22.9 5.1 45 124-172 23-70 (106)
186 1dl6_A Transcription factor II 40.2 24 0.00082 23.1 3.1 37 49-87 4-40 (58)
187 1wjv_A Cell growth regulating 39.9 8 0.00027 27.4 0.6 42 122-167 14-56 (79)
188 2d8z_A Four and A half LIM dom 38.9 10 0.00035 25.1 1.1 33 55-87 30-62 (70)
189 3vhs_A ATPase wrnip1; zinc fin 38.4 8.7 0.0003 21.2 0.5 17 124-140 12-28 (29)
190 1x4v_A Hypothetical protein LO 38.4 25 0.00087 23.6 3.0 37 55-92 11-50 (63)
191 1x4l_A Skeletal muscle LIM-pro 37.5 11 0.00037 25.2 1.0 33 55-87 34-66 (72)
192 2zet_C Melanophilin; complex, 36.7 17 0.00057 29.0 2.1 42 55-96 67-116 (153)
193 1we9_A PHD finger family prote 36.2 19 0.00067 23.7 2.1 30 54-83 4-36 (64)
194 3mjh_B Early endosome antigen 36.1 24 0.00082 20.8 2.2 26 144-173 5-31 (34)
195 1paa_A Yeast transcription fac 36.0 26 0.00089 17.8 2.3 25 144-172 2-27 (30)
196 2vy4_A U11/U12 small nuclear r 35.8 12 0.00043 22.3 1.0 25 114-141 5-29 (37)
197 2jvx_A NF-kappa-B essential mo 35.5 11 0.00039 21.2 0.7 14 56-69 3-16 (28)
198 2kvf_A Zinc finger and BTB dom 35.4 28 0.00094 17.4 2.4 23 143-169 2-25 (28)
199 1klr_A Zinc finger Y-chromosom 35.0 26 0.00089 17.6 2.2 25 144-172 2-27 (30)
200 1wil_A KIAA1045 protein; ring 34.4 18 0.00062 26.0 1.8 37 51-87 10-47 (89)
201 1a7i_A QCRP2 (LIM1); LIM domai 34.4 11 0.00037 25.9 0.6 41 55-95 33-74 (81)
202 1zbd_B Rabphilin-3A; G protein 34.3 20 0.00069 27.8 2.2 33 55-87 54-90 (134)
203 1ard_A Yeast transcription fac 33.9 36 0.0012 16.9 2.7 23 144-170 2-25 (29)
204 1wig_A KIAA1808 protein; LIM d 33.7 15 0.0005 24.8 1.2 33 55-87 30-63 (73)
205 2cur_A Skeletal muscle LIM-pro 33.5 12 0.00043 24.6 0.8 32 56-87 31-62 (69)
206 2cu8_A Cysteine-rich protein 2 33.4 17 0.00059 24.5 1.5 31 56-86 36-67 (76)
207 2cor_A Pinch protein; LIM doma 33.2 17 0.00058 24.9 1.5 32 55-87 40-71 (79)
208 1weu_A Inhibitor of growth fam 32.9 90 0.0031 22.4 5.4 46 52-98 32-86 (91)
209 2dar_A PDZ and LIM domain prot 32.5 16 0.00055 25.6 1.3 37 57-99 26-62 (90)
210 2ehe_A Four and A half LIM dom 32.4 21 0.0007 24.4 1.8 33 55-87 42-74 (82)
211 1b8t_A Protein (CRP1); LIM dom 32.2 17 0.00059 29.4 1.6 11 57-67 116-126 (192)
212 2kvh_A Zinc finger and BTB dom 31.4 34 0.0012 16.9 2.3 23 143-169 2-25 (27)
213 2k16_A Transcription initiatio 31.3 25 0.00086 23.9 2.1 47 52-98 14-69 (75)
214 2lv9_A Histone-lysine N-methyl 31.1 52 0.0018 23.8 3.9 43 54-97 26-76 (98)
215 1p7a_A BF3, BKLF, kruppel-like 30.9 50 0.0017 17.7 3.1 25 142-170 9-34 (37)
216 2egq_A FHL1 protein; LIM domai 30.4 13 0.00044 25.1 0.4 10 58-67 17-26 (77)
217 4gzn_C ZFP-57, zinc finger pro 30.3 39 0.0013 21.9 2.8 44 124-172 10-56 (60)
218 1rik_A E6APC1 peptide; E6-bind 30.3 32 0.0011 17.2 2.1 22 144-169 2-24 (29)
219 1znf_A 31ST zinc finger from X 30.3 46 0.0016 16.2 2.7 22 144-169 1-23 (27)
220 1nyp_A Pinch protein; LIM doma 30.1 12 0.00042 24.4 0.3 31 56-86 31-61 (66)
221 1yuz_A Nigerythrin; rubrythrin 29.6 24 0.00081 29.3 2.0 10 89-98 187-196 (202)
222 3j21_g 50S ribosomal protein L 29.5 18 0.00062 23.3 1.0 29 50-78 8-37 (51)
223 1wyh_A SLIM 2, skeletal muscle 29.4 15 0.00052 24.3 0.7 32 56-87 33-64 (72)
224 2cuq_A Four and A half LIM dom 29.2 27 0.00093 23.6 2.0 24 76-99 2-26 (80)
225 2d8x_A Protein pinch; LIM doma 29.1 14 0.00049 24.4 0.5 31 56-86 31-61 (70)
226 1x4k_A Skeletal muscle LIM-pro 29.1 14 0.00048 24.5 0.4 30 57-86 34-63 (72)
227 2elx_A Zinc finger protein 406 28.7 40 0.0014 17.8 2.4 25 143-171 6-31 (35)
228 2dlo_A Thyroid receptor-intera 28.7 22 0.00076 24.2 1.5 24 76-99 3-26 (81)
229 2dj7_A Actin-binding LIM prote 28.5 24 0.00082 24.3 1.6 10 58-67 17-26 (80)
230 1sp2_A SP1F2; zinc finger, tra 28.5 52 0.0018 16.8 2.8 24 144-169 2-26 (31)
231 1wys_A Riken cDNA 2310008M20 p 28.5 31 0.001 24.1 2.1 36 57-93 15-53 (75)
232 2iyb_E Testin, TESS, TES; LIM 28.2 16 0.00055 23.9 0.6 32 55-86 31-63 (65)
233 2m0e_A Zinc finger and BTB dom 27.6 32 0.0011 17.0 1.7 23 144-170 2-25 (29)
234 1flk_A TNF receptor associated 26.9 16 0.00053 30.7 0.4 14 115-128 10-23 (228)
235 1srk_A Zinc finger protein ZFP 26.8 50 0.0017 17.4 2.6 25 143-171 6-31 (35)
236 1f2i_G Fusion of N-terminal 17 26.6 48 0.0016 21.2 2.9 49 115-169 20-71 (73)
237 2m0d_A Zinc finger and BTB dom 26.5 51 0.0018 16.3 2.5 23 143-169 2-25 (30)
238 2cr8_A MDM4 protein; ZF-ranbp 26.3 44 0.0015 21.6 2.3 30 50-86 5-34 (53)
239 2elq_A Zinc finger protein 406 26.0 49 0.0017 17.7 2.5 23 143-169 8-31 (36)
240 2kvg_A Zinc finger and BTB dom 25.8 35 0.0012 17.0 1.7 23 143-169 2-25 (27)
241 2elm_A Zinc finger protein 406 25.7 54 0.0018 17.9 2.6 26 143-172 8-34 (37)
242 2k5r_A Uncharacterized protein 25.1 35 0.0012 25.0 2.0 17 51-67 3-19 (97)
243 4rxn_A Rubredoxin; electron tr 25.1 33 0.0011 22.3 1.7 20 45-65 26-45 (54)
244 1flk_A TNF receptor associated 24.4 19 0.00064 30.2 0.5 23 147-169 12-39 (228)
245 1b8t_A Protein (CRP1); LIM dom 24.2 22 0.00074 28.8 0.8 43 54-96 32-75 (192)
246 2m0f_A Zinc finger and BTB dom 24.2 42 0.0014 16.6 1.8 22 144-169 2-24 (29)
247 2elt_A Zinc finger protein 406 24.1 50 0.0017 17.5 2.2 23 143-169 8-31 (36)
248 1wen_A Inhibitor of growth fam 24.0 1.6E+02 0.0054 19.9 5.1 45 53-98 13-66 (71)
249 1zfd_A SWI5; DNA binding motif 23.8 68 0.0023 16.4 2.7 25 143-169 2-27 (32)
250 2els_A Zinc finger protein 406 23.7 53 0.0018 17.5 2.3 24 143-170 8-32 (36)
251 1x3h_A Leupaxin; paxillin fami 23.4 32 0.0011 23.2 1.5 30 57-86 42-71 (80)
252 1rim_A E6APC2 peptide; E6-bind 23.3 60 0.0021 17.2 2.5 23 144-170 2-25 (33)
253 1j2o_A FLIN2, fusion of rhombo 23.3 28 0.00096 25.6 1.2 39 55-94 29-71 (114)
254 2kdx_A HYPA, hydrogenase/ureas 23.2 48 0.0017 24.7 2.6 9 90-98 92-100 (119)
255 2d8v_A Zinc finger FYVE domain 23.2 35 0.0012 23.2 1.5 32 53-87 5-38 (67)
256 2l7x_A Envelope glycoprotein; 23.0 84 0.0029 21.6 3.4 19 124-142 36-54 (77)
257 1e8j_A Rubredoxin; iron-sulfur 22.9 38 0.0013 21.8 1.6 15 51-65 31-45 (52)
258 3mpx_A FYVE, rhogef and PH dom 22.8 18 0.00061 33.0 0.0 32 55-86 374-408 (434)
259 1yk4_A Rubredoxin, RD; electro 22.7 40 0.0014 21.7 1.7 15 51-65 30-44 (52)
260 2eos_A B-cell lymphoma 6 prote 22.7 82 0.0028 17.5 3.1 24 143-170 10-34 (42)
261 2ept_A Zinc finger protein 32; 22.6 83 0.0029 17.3 3.1 24 143-170 9-33 (41)
262 1lko_A Rubrerythrin all-iron(I 22.5 26 0.00089 28.6 1.0 9 89-97 172-180 (191)
263 2eon_A ZFP-95, zinc finger pro 22.5 81 0.0028 18.0 3.1 23 143-169 11-34 (46)
264 2elo_A Zinc finger protein 406 22.1 47 0.0016 17.9 1.8 25 143-171 8-33 (37)
265 2epx_A Zinc finger protein 28 22.0 63 0.0021 18.5 2.5 26 143-172 11-37 (47)
266 3ky9_A Proto-oncogene VAV; cal 22.0 46 0.0016 31.8 2.7 38 54-92 527-568 (587)
267 2d8y_A Eplin protein; LIM doma 21.8 35 0.0012 23.8 1.4 10 58-67 17-26 (91)
268 2co8_A NEDD9 interacting prote 21.7 49 0.0017 22.6 2.2 31 57-87 43-75 (82)
269 1g47_A Pinch protein; LIM doma 21.6 21 0.00071 24.0 0.1 9 58-66 13-21 (77)
270 2ytn_A Zinc finger protein 347 21.6 1.1E+02 0.0037 17.3 3.6 25 142-170 10-35 (46)
271 3iuf_A Zinc finger protein UBI 21.5 60 0.0021 19.2 2.4 26 143-172 6-32 (48)
272 2yte_A Zinc finger protein 473 21.2 1.1E+02 0.0037 16.8 3.5 23 143-169 9-32 (42)
273 2elr_A Zinc finger protein 406 21.1 79 0.0027 16.6 2.7 24 143-170 8-32 (36)
274 1x4s_A Protein FON, zinc finge 21.0 75 0.0026 21.1 2.8 35 53-87 8-45 (59)
275 2epz_A Zinc finger protein 28 20.7 1E+02 0.0035 17.4 3.3 24 143-170 11-35 (46)
276 2el5_A Zinc finger protein 268 20.6 99 0.0034 17.0 3.2 25 143-171 9-34 (42)
277 1x6a_A LIMK-2, LIM domain kina 20.6 46 0.0016 22.5 1.8 23 77-99 3-26 (81)
278 1ncs_A Peptide M30F, transcrip 20.5 45 0.0015 19.6 1.6 27 141-169 15-42 (47)
279 2v3b_B Rubredoxin 2, rubredoxi 20.5 40 0.0014 21.9 1.4 15 51-65 31-45 (55)
280 2ej4_A Zinc finger protein ZIC 20.4 1.2E+02 0.004 20.3 4.0 23 145-171 63-86 (95)
281 2elv_A Zinc finger protein 406 20.2 70 0.0024 17.0 2.3 23 143-169 8-31 (36)
282 2lbm_A Transcriptional regulat 20.2 58 0.002 25.5 2.5 42 54-97 61-117 (142)
283 2lvu_A Zinc finger and BTB dom 25.5 22 0.00075 17.6 0.0 21 144-168 2-23 (26)
284 2lri_C Autoimmune regulator; Z 20.0 1.1E+02 0.0037 20.4 3.6 42 55-98 11-60 (66)
285 2kn9_A Rubredoxin; metalloprot 20.0 43 0.0015 23.7 1.5 14 51-64 55-68 (81)
No 1
>2a25_A Ubiquitin ligase SIAH1; protein-peptide complex, ligase; 2.20A {Homo sapiens} PDB: 2an6_A 1k2f_A
Probab=100.00 E-value=3.1e-36 Score=257.83 Aligned_cols=160 Identities=31% Similarity=0.666 Sum_probs=102.5
Q ss_pred HhhhcCCCcccccCCCCceeccCcHHhhhhcCCCccccCCCCCCCCccccChhHHHHHhhhcCCC-CCcCCceEEEEEee
Q 046177 109 VAASLELPCKYQSYGCMGIYPYYSKLKHESQCIFRPYNCPYAGSECTVMGDIPYLVAHLKDDHKV-DMHNGSTFNHRYVK 187 (272)
Q Consensus 109 ~~~~l~v~C~~~~~GC~~~~~~~~~~~He~~C~~~~~~CP~~~~~C~~~g~~~~l~~Hl~~~H~~-~~~~g~~~~~~~~~ 187 (272)
+++++++||+|+.+||++.++|.++.+||+.|+|+|+.||.+|..|+|+|+.++|..|+..+|++ .+++|.++ .|.+
T Consensus 1 v~~s~~~pC~~~~~GC~~~~~y~~~~~He~~C~f~p~~Cp~~g~~C~~~G~~~~l~~H~~~~H~~~~~~~g~~i--~f~~ 78 (193)
T 2a25_A 1 VANSVLFPCKYASSGCEITLPHTEKADHEELCEFRPYSCPCPGASCKWQGSLDAVMPHLMHQHKSITTLQGEDI--VFLA 78 (193)
T ss_dssp -----------------------------------CEECCCC--CCCCEECSTTHHHHHHHHCTTSCEEESSEE--EEEE
T ss_pred CccceEecCCCCCCCCCcccccccccchhhcCCCCCccCCCCCCCCcCCCCHHHHHHHHHHHCCCcceecCceE--EEEe
Confidence 46789999999999999999999999999999999999999877899999999999999999997 56778876 4666
Q ss_pred cCCcccccceeEEEEEeecCeeEEEEEeeeeeCC-ccEEEEEEEEeCCccCCCCcEEEEEEecCCceEEEEeeccchhcc
Q 046177 188 QNPHEVENATWMLTVFSCFGQYFCLHFEAFQLGM-APVYIAFLRFMGDDNESKNYSYSLEVGGNGRKMSWQGVPRSIRDS 266 (272)
Q Consensus 188 s~~~~v~~~~~~l~v~~~~~~~F~l~~~~~~~~~-~~~~~a~v~~iG~~~~a~~f~Y~l~~~~~~r~l~~~s~~~si~~~ 266 (272)
++++...+.+|++ +++|+|++|+|+++++.+++ .++++++|++||++++|++|+|+|++.+++|+|+||++|+||+|+
T Consensus 79 ~~~~l~~~~~~~~-v~~~~g~~Fll~~~~~~~~~g~~~~~~~V~~ig~~~ea~~f~Y~l~~~~~~r~L~~~~~~~s~~e~ 157 (193)
T 2a25_A 79 TDINLPGAVDWVM-MQSCFGFHFMLVLEKQEKYDGHQQFFAIVQLIGTRKQAENFAYRLELNGHRRRLTWEATPRSIHEG 157 (193)
T ss_dssp ECCC----CEEEE-EEEETTEEEEEEEEEC------CEEEEEEEESSCHHHHTTEEEEEEEEETTEEEEEEECCEETTTC
T ss_pred cccccccceeEEE-EEEecCceEEEEEEEeccCCCCcEEEEEEEEeCCcchhcceEEEEEEEcCCCEEEEEEEEEehhhc
Confidence 6665444568974 88999999999999998755 367888899999999999999999999999999999999999999
Q ss_pred ccccc
Q 046177 267 HKKVR 271 (272)
Q Consensus 267 ~~~~~ 271 (272)
+++++
T Consensus 158 ~~~~~ 162 (193)
T 2a25_A 158 IATAI 162 (193)
T ss_dssp SHHHH
T ss_pred ccccc
Confidence 88764
No 2
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=99.88 E-value=1.9e-23 Score=174.54 Aligned_cols=124 Identities=22% Similarity=0.428 Sum_probs=111.2
Q ss_pred cCCCcccccCCCCeeeeccccccCcCCcccccCCceeccCccccc----CCCCCCcccCCCc---ccchhHHHHhhhcCC
Q 046177 43 LKPNLTVSSSVRELLECPVCLNAMYPPIHQCSNGHTLCSGCKPRV----HNRCPTCRHELGN---IRCLALEKVAASLEL 115 (272)
Q Consensus 43 ~~~~~~~~~~~~~~l~CpiC~~~l~~Pv~qC~cGH~~C~~C~~~~----~~~CP~Cr~~~~~---~r~~~le~~~~~l~v 115 (272)
++.+..+.+.+.+.|.||||++++.+|+ +++|||+||..|+.+| ...||.||.++.. .++.++++++.++++
T Consensus 5 ~g~~~~~~~~~~~~~~C~IC~~~~~~pv-~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~~~i~~l~v 83 (170)
T 3hcs_A 5 QGYDVEFDPPLESKYECPICLMALREAV-QTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQLFPDNFAKREILSLMV 83 (170)
T ss_dssp CCBCSEESSCCCGGGBCTTTCSBCSSEE-ECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGGGCEECHHHHHHHHTSEE
T ss_pred CCCChhhccCCCCCCCCCCCChhhcCcE-ECCCCCHHHHHHHHHHHHhCCCCCCCCccCcchhhhhhhHHHHHHHhhccc
Confidence 3455668889999999999999999997 5699999999999998 2489999999875 578899999999999
Q ss_pred CcccccCCCCceeccCcHHhhhhcCCCccccCCCCCCCCccccChhHHHHHhhhcCCC
Q 046177 116 PCKYQSYGCMGIYPYYSKLKHESQCIFRPYNCPYAGSECTVMGDIPYLVAHLKDDHKV 173 (272)
Q Consensus 116 ~C~~~~~GC~~~~~~~~~~~He~~C~~~~~~CP~~~~~C~~~g~~~~l~~Hl~~~H~~ 173 (272)
+|+| .||+|.+++.++.+|+++|+|+++.|| +|++.+.+.+|..|+......
T Consensus 84 ~C~n--~GC~~~~~~~~l~~H~~~C~~~~v~C~----~C~~~~~r~~l~~H~~~~C~~ 135 (170)
T 3hcs_A 84 KCPN--EGCLHKMELRHLEDHQAHCEFALMDCP----QCQRPFQKFHINIHILKDCPR 135 (170)
T ss_dssp ECCS--TTCCCEEEGGGHHHHHTTCTTSEEECT----TTCCEEEGGGHHHHHHHTCTT
T ss_pred CCCC--CCCCceecHhHHHHHHhcCCceeeECC----CCChHHHHHHHHHHhhhhCCC
Confidence 9998 599999999999999999999999998 399999999999999866554
No 3
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=99.72 E-value=2.7e-18 Score=135.07 Aligned_cols=98 Identities=21% Similarity=0.455 Sum_probs=85.2
Q ss_pred CCCcccccCCCCeeeeccccccCcCCcccccCCceeccCcccccC----CCCCCcccCCCc---ccchhHHHHhhhcCCC
Q 046177 44 KPNLTVSSSVRELLECPVCLNAMYPPIHQCSNGHTLCSGCKPRVH----NRCPTCRHELGN---IRCLALEKVAASLELP 116 (272)
Q Consensus 44 ~~~~~~~~~~~~~l~CpiC~~~l~~Pv~qC~cGH~~C~~C~~~~~----~~CP~Cr~~~~~---~r~~~le~~~~~l~v~ 116 (272)
+....+.+.+.+.+.||||++++..|+.. .|||+||..|+.+|. ..||.||.++.. .++..+++++.++++.
T Consensus 6 g~~~~~~~~~~~~~~C~IC~~~~~~p~~~-~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~l~~~i~~l~v~ 84 (118)
T 3hct_A 6 GYDVEFDPPLESKYECPICLMALREAVQT-PCGHRFCKACIIKSIRDAGHKCPVDNEILLENQLFPDNFAKREILSLMVK 84 (118)
T ss_dssp CBCSCBSSCCCGGGBCTTTCSBCSSEEEC-TTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGGGCEECHHHHHHHHTSEEE
T ss_pred CCChhhccCCCCCCCCCcCChhhcCeEEC-CcCChhhHHHHHHHHhhCCCCCCCCCCCcCHHhcccCHHHHHHHccceeE
Confidence 44455778899999999999999999754 899999999999882 489999999875 4788999999999999
Q ss_pred cccccCCCCceeccCcHHhhhhcCCCcc
Q 046177 117 CKYQSYGCMGIYPYYSKLKHESQCIFRP 144 (272)
Q Consensus 117 C~~~~~GC~~~~~~~~~~~He~~C~~~~ 144 (272)
|+| .||+|.+++.++.+|+++|.+..
T Consensus 85 C~n--~gC~~~~~~~~l~~H~~~c~~~~ 110 (118)
T 3hct_A 85 CPN--EGCLHKMELRHLEDHQAHCEFAL 110 (118)
T ss_dssp CSS--TTCCCEEEGGGSGGGTSSSCC--
T ss_pred CCC--CCCCCEEeeHHHHHHHHHchhhh
Confidence 997 79999999999999999998653
No 4
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=99.67 E-value=7.2e-18 Score=137.01 Aligned_cols=90 Identities=26% Similarity=0.434 Sum_probs=79.0
Q ss_pred cccCCCCeeeeccccccCcCCcccccCCceeccCcccccC----CCCCCcccCCCc------------ccchhHHHHhhh
Q 046177 49 VSSSVRELLECPVCLNAMYPPIHQCSNGHTLCSGCKPRVH----NRCPTCRHELGN------------IRCLALEKVAAS 112 (272)
Q Consensus 49 ~~~~~~~~l~CpiC~~~l~~Pv~qC~cGH~~C~~C~~~~~----~~CP~Cr~~~~~------------~r~~~le~~~~~ 112 (272)
+.+.+.+.+.||||++++.+|+ +..|||+||..|+.+|. ..||.||.++.. .++.++++.+.+
T Consensus 24 ~~~~l~~~~~C~IC~~~~~~pv-~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~l~~~~~~~d~~~~~~i~~ 102 (141)
T 3knv_A 24 LGTKLEAKYLCSACRNVLRRPF-QAQCGHRYCSFCLASILSSGPQNCAACVHEGIYEEGISILESSSAFPDNAARREVES 102 (141)
T ss_dssp TGGGCCGGGBCTTTCSBCSSEE-ECTTSCEEEHHHHHHHGGGSCEECHHHHHTTCCCTTTTEECGGGCEECHHHHHHHHT
T ss_pred hhccCCcCcCCCCCChhhcCcE-ECCCCCccCHHHHHHHHhcCCCCCCCCCCcccccccccccchhhhcccHHHHHHHcc
Confidence 3478899999999999999997 55899999999999982 389999997521 377889999999
Q ss_pred cCCCcccccCCCCceeccCcHHh-hhhcCC
Q 046177 113 LELPCKYQSYGCMGIYPYYSKLK-HESQCI 141 (272)
Q Consensus 113 l~v~C~~~~~GC~~~~~~~~~~~-He~~C~ 141 (272)
++++|+| .||.|.+++.++++ |+..|+
T Consensus 103 L~v~Cpn--~GC~~~~~l~~l~~~H~~~~~ 130 (141)
T 3knv_A 103 LPAVCPS--DGCTWKGTLKEYESCHEGRCP 130 (141)
T ss_dssp SEEECCS--TTCCCEEEHHHHHHHTTTCCH
T ss_pred cccccCC--CCCCCEeEHHHHHHHHHHHhH
Confidence 9999999 69999999999998 998886
No 5
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=99.65 E-value=2.1e-17 Score=129.33 Aligned_cols=91 Identities=21% Similarity=0.355 Sum_probs=79.4
Q ss_pred ccCCCCeeeeccccccCcCCcccccCCceeccCccccc----CCCCCCcccCCCc----ccchhHHHHhhhcCCCccccc
Q 046177 50 SSSVRELLECPVCLNAMYPPIHQCSNGHTLCSGCKPRV----HNRCPTCRHELGN----IRCLALEKVAASLELPCKYQS 121 (272)
Q Consensus 50 ~~~~~~~l~CpiC~~~l~~Pv~qC~cGH~~C~~C~~~~----~~~CP~Cr~~~~~----~r~~~le~~~~~l~v~C~~~~ 121 (272)
.+++.+.+.||||++++.+|+.. .|||+||..|+.+| ...||.||.++.. ..+..+.+++..+++.|+|.
T Consensus 17 ~~~~~~~~~C~IC~~~~~~p~~~-~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~l~~~i~~l~v~C~~~- 94 (116)
T 1rmd_A 17 PAHFVKSISCQICEHILADPVET-SCKHLFCRICILRCLKVMGSYCPSCRYPCFPTDLESPVKSFLNILNSLMVKCPAQ- 94 (116)
T ss_dssp CHHHHHHTBCTTTCSBCSSEEEC-TTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCBCCCHHHHHHHHHCEEECCST-
T ss_pred HHhccCCCCCCCCCcHhcCcEEc-CCCCcccHHHHHHHHhHCcCcCCCCCCCCCHhhccccHHHHHHHHHHhcCCCCCC-
Confidence 34556788999999999999854 89999999999987 3589999999864 34678899999999999995
Q ss_pred CCCCceeccCcHHhhhhcCCCc
Q 046177 122 YGCMGIYPYYSKLKHESQCIFR 143 (272)
Q Consensus 122 ~GC~~~~~~~~~~~He~~C~~~ 143 (272)
||+|.+++.++.+|+++|.+.
T Consensus 95 -gC~~~~~~~~~~~H~~~C~~~ 115 (116)
T 1rmd_A 95 -DCNEEVSLEKYNHHVSSHKES 115 (116)
T ss_dssp -TCCCEEEHHHHHHHHHTSCCC
T ss_pred -CCcchhhHhHHHHHHHHhhcc
Confidence 999999999999999999874
No 6
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=99.16 E-value=1.1e-11 Score=92.46 Aligned_cols=67 Identities=19% Similarity=0.413 Sum_probs=55.3
Q ss_pred cccCCCCeeeeccccccCcCCccccc-CCceeccCcccccC-----CCCCCcccCCC----cccchhHHHHhhhcCCC
Q 046177 49 VSSSVRELLECPVCLNAMYPPIHQCS-NGHTLCSGCKPRVH-----NRCPTCRHELG----NIRCLALEKVAASLELP 116 (272)
Q Consensus 49 ~~~~~~~~l~CpiC~~~l~~Pv~qC~-cGH~~C~~C~~~~~-----~~CP~Cr~~~~----~~r~~~le~~~~~l~v~ 116 (272)
..+.+.+.+.||||++++.+|+.. . |||+||..|+.+|. ..||.||.++. ..+|..++++++.+.-.
T Consensus 6 ~~~~~~~~~~C~IC~~~~~~p~~~-~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~~~~~~n~~l~~~i~~~~~~ 82 (92)
T 3ztg_A 6 EDDPIPDELLCLICKDIMTDAVVI-PCCGNSYCDECIRTALLESDEHTCPTCHQNDVSPDALIANKFLRQAVNNFKNE 82 (92)
T ss_dssp SCCCCCTTTEETTTTEECSSCEEC-TTTCCEECHHHHHHHHHHCTTCCCTTTCCSSCCTTSCEECHHHHHHHHHHHHH
T ss_pred ccccCCcCCCCCCCChhhcCceEC-CCCCCHHHHHHHHHHHHhcCCCcCcCCCCcCCCccccCcCHHHHHHHHHHHHH
Confidence 456778899999999999999865 7 99999999998872 58999999973 25788888888876543
No 7
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=99.12 E-value=1.5e-11 Score=88.96 Aligned_cols=63 Identities=24% Similarity=0.406 Sum_probs=52.8
Q ss_pred cCCCCeeeeccccccCcCCcccccCCceeccCccccc----CCCCCCcccCCCc---ccchhHHHHhhhcC
Q 046177 51 SSVRELLECPVCLNAMYPPIHQCSNGHTLCSGCKPRV----HNRCPTCRHELGN---IRCLALEKVAASLE 114 (272)
Q Consensus 51 ~~~~~~l~CpiC~~~l~~Pv~qC~cGH~~C~~C~~~~----~~~CP~Cr~~~~~---~r~~~le~~~~~l~ 114 (272)
.++.+.+.||||++++.+|+.. .|||+||..|+.+| ...||.||.++.. .+|..++++++.+.
T Consensus 3 ~~~~~~~~C~IC~~~~~~Pv~~-~CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~~~~l~~n~~l~~~i~~~~ 72 (78)
T 1t1h_A 3 PEFPEYFRCPISLELMKDPVIV-STGQTYERSSIQKWLDAGHKTCPKSQETLLHAGLTPNYVLKSLIALWC 72 (78)
T ss_dssp CCCSSSSSCTTTSCCCSSEEEE-TTTEEEEHHHHHHHHTTTCCBCTTTCCBCSSCCCEECTTTHHHHHHHH
T ss_pred cCCcccCCCCCccccccCCEEc-CCCCeecHHHHHHHHHHCcCCCCCCcCCCChhhCccCHHHHHHHHHHH
Confidence 4567889999999999999865 89999999999987 3579999999864 56888888887653
No 8
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=99.06 E-value=8.1e-11 Score=89.44 Aligned_cols=64 Identities=14% Similarity=0.063 Sum_probs=54.9
Q ss_pred ccCCCCeeeeccccccCcCCcccccCC-ceeccCccccc---CCCCCCcccCCCc---ccchhHHHHhhhcC
Q 046177 50 SSSVRELLECPVCLNAMYPPIHQCSNG-HTLCSGCKPRV---HNRCPTCRHELGN---IRCLALEKVAASLE 114 (272)
Q Consensus 50 ~~~~~~~l~CpiC~~~l~~Pv~qC~cG-H~~C~~C~~~~---~~~CP~Cr~~~~~---~r~~~le~~~~~l~ 114 (272)
...+++.|.||||+++|++||.. .|| |+||+.|+.+| ...||.|+.++.. .+|..|.+++..+.
T Consensus 16 ~~~~p~~~~CpI~~~~m~dPV~~-~cG~htf~r~cI~~~l~~~~~cP~~~~~l~~~~L~pn~~Lk~~I~~~~ 86 (98)
T 1wgm_A 16 YADACDEFLDPIMSTLMCDPVVL-PSSRVTVDRSTIARHLLSDQTDPFNRSPLTMDQIRPNTELKEKIQRWL 86 (98)
T ss_dssp CCSCCTTTBCTTTCSBCSSEEEC-TTTCCEEEHHHHHHHTTTSCBCTTTCSBCCTTTSEECHHHHHHHHHHH
T ss_pred hhcCcHhcCCcCccccccCCeEC-CCCCeEECHHHHHHHHHhCCCCCCCCCCCChhhceEcHHHHHHHHHHH
Confidence 45678899999999999999865 799 99999999998 3689999999874 67888888887764
No 9
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=99.06 E-value=3.1e-11 Score=87.29 Aligned_cols=51 Identities=31% Similarity=0.769 Sum_probs=43.9
Q ss_pred cccCCCCeeeeccccccCcCCcccccCCceeccCccccc----------CCCCCCcccCCCc
Q 046177 49 VSSSVRELLECPVCLNAMYPPIHQCSNGHTLCSGCKPRV----------HNRCPTCRHELGN 100 (272)
Q Consensus 49 ~~~~~~~~l~CpiC~~~l~~Pv~qC~cGH~~C~~C~~~~----------~~~CP~Cr~~~~~ 100 (272)
+.+.+.+.+.|+||++.+.+|+.. .|||+||..|+.+| ...||.||.++..
T Consensus 5 ~~~~~~~~~~C~IC~~~~~~p~~l-~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~ 65 (79)
T 2egp_A 5 SSGNVQEEVTCPICLELLTEPLSL-DCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSF 65 (79)
T ss_dssp SSCCCCCCCEETTTTEECSSCCCC-SSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCS
T ss_pred hHhhcccCCCCcCCCcccCCeeEC-CCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCH
Confidence 457788899999999999999854 89999999999976 2479999998863
No 10
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=99.05 E-value=7.1e-11 Score=87.38 Aligned_cols=63 Identities=16% Similarity=0.130 Sum_probs=54.2
Q ss_pred ccCCCCeeeeccccccCcCCcccccCCceeccCccccc---CCCCCCcccCCCc---ccchhHHHHhhhc
Q 046177 50 SSSVRELLECPVCLNAMYPPIHQCSNGHTLCSGCKPRV---HNRCPTCRHELGN---IRCLALEKVAASL 113 (272)
Q Consensus 50 ~~~~~~~l~CpiC~~~l~~Pv~qC~cGH~~C~~C~~~~---~~~CP~Cr~~~~~---~r~~~le~~~~~l 113 (272)
...+.+.|.||||.++|.+||.. .|||+||+.|+.+| ...||.|+.++.. .+|.++.+++..+
T Consensus 8 ~~~~p~~~~CpI~~~~m~dPV~~-~cGhtf~r~~I~~~l~~~~~cP~~~~~l~~~~l~pn~~L~~~i~~~ 76 (85)
T 2kr4_A 8 YSDAPDEFRDPLMDTLMTDPVRL-PSGTVMDRSIILRHLLNSPTDPFNRQMLTESMLEPVPELKEQIQAW 76 (85)
T ss_dssp CTTCCTTTBCTTTCSBCSSEEEC-TTSCEEEHHHHHHHHHHCSBCTTTCCBCCGGGCEECHHHHHHHHHH
T ss_pred hhcCchheECcccCchhcCCeEC-CCCCEECHHHHHHHHhcCCCCCCCcCCCChHhcchHHHHHHHHHHH
Confidence 45678899999999999999865 79999999999998 4789999999864 6788888888765
No 11
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.00 E-value=9.6e-11 Score=85.47 Aligned_cols=59 Identities=25% Similarity=0.661 Sum_probs=47.4
Q ss_pred cccCCCCeeeeccccccCcCCcccccCCceeccCccccc---------CCCCCCcccCCCc---ccchhHHH
Q 046177 49 VSSSVRELLECPVCLNAMYPPIHQCSNGHTLCSGCKPRV---------HNRCPTCRHELGN---IRCLALEK 108 (272)
Q Consensus 49 ~~~~~~~~l~CpiC~~~l~~Pv~qC~cGH~~C~~C~~~~---------~~~CP~Cr~~~~~---~r~~~le~ 108 (272)
..+.+.+.+.|+||++.+..|+.. .|||.||..|+.+| ...||.||..+.. .+|..+++
T Consensus 12 ~~~~~~~~~~C~IC~~~~~~p~~~-~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~n~~l~~ 82 (85)
T 2ecv_A 12 ILVNVKEEVTCPICLELLTQPLSL-DCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQPENIRPNRHVAN 82 (85)
T ss_dssp CCCCCCCCCCCTTTCSCCSSCBCC-SSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCSSSCCCSCCCCC
T ss_pred HHHHccCCCCCCCCCcccCCceeC-CCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCHHhcCccHHHHH
Confidence 456778889999999999999865 89999999999886 3689999998863 34444443
No 12
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=98.98 E-value=4.8e-11 Score=90.32 Aligned_cols=66 Identities=24% Similarity=0.529 Sum_probs=54.1
Q ss_pred cccCCCCeeeeccccccCcCCcccccCCceeccCccccc---CCCCCCcccCCCc---ccchhHHHHhhhcC
Q 046177 49 VSSSVRELLECPVCLNAMYPPIHQCSNGHTLCSGCKPRV---HNRCPTCRHELGN---IRCLALEKVAASLE 114 (272)
Q Consensus 49 ~~~~~~~~l~CpiC~~~l~~Pv~qC~cGH~~C~~C~~~~---~~~CP~Cr~~~~~---~r~~~le~~~~~l~ 114 (272)
..+.+.+.+.|+||++.+.+|+..-.|||.||..|+.+| ...||.||.++.. .+|..++++++.++
T Consensus 15 ~~~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~l~~n~~l~~~i~~~~ 86 (99)
T 2y43_A 15 VMKTIDDLLRCGICFEYFNIAMIIPQCSHNYCSLCIRKFLSYKTQCPTCCVTVTEPDLKNNRILDELVKSLN 86 (99)
T ss_dssp GGHHHHHHTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHTTCCBCTTTCCBCCGGGCEECHHHHHHHHHHH
T ss_pred HHHhCCCCCCcccCChhhCCcCEECCCCCHhhHHHHHHHHHCCCCCCCCCCcCChhhCCcCHHHHHHHHHHH
Confidence 345567789999999999999755369999999999988 3689999999874 56888888887654
No 13
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=98.96 E-value=1.7e-10 Score=88.04 Aligned_cols=64 Identities=16% Similarity=0.124 Sum_probs=54.8
Q ss_pred ccCCCCeeeeccccccCcCCcccccCCceeccCccccc---CCCCCCcccCCCc---ccchhHHHHhhhcC
Q 046177 50 SSSVRELLECPVCLNAMYPPIHQCSNGHTLCSGCKPRV---HNRCPTCRHELGN---IRCLALEKVAASLE 114 (272)
Q Consensus 50 ~~~~~~~l~CpiC~~~l~~Pv~qC~cGH~~C~~C~~~~---~~~CP~Cr~~~~~---~r~~~le~~~~~l~ 114 (272)
...+++.|.||||.++|.+||.. .|||+||+.|+.+| ...||.|+.++.. .+|..+.+++..+.
T Consensus 23 ~~~~p~~~~CpI~~~~m~dPV~~-~cGhtf~r~~I~~~l~~~~~cP~~~~~l~~~~L~pn~~Lk~~I~~~~ 92 (100)
T 2kre_A 23 YSDAPDEFRDPLMDTLMTDPVRL-PSGTIMDRSIILRHLLNSPTDPFNRQTLTESMLEPVPELKEQIQAWM 92 (100)
T ss_dssp CSSCSTTTBCTTTCSBCSSEEEE-TTTEEEEHHHHHHHTTSCSBCSSSCCBCCTTSSEECHHHHHHHHHHH
T ss_pred hccCcHhhCCcCccCcccCCeEC-CCCCEEchHHHHHHHHcCCCCCCCCCCCChhhceECHHHHHHHHHHH
Confidence 45678899999999999999866 79999999999998 3689999999864 67888888887664
No 14
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.96 E-value=1.2e-10 Score=91.03 Aligned_cols=65 Identities=22% Similarity=0.417 Sum_probs=53.1
Q ss_pred cccCCCCeeeeccccccCcCCcccccCCceeccCcccccC-CCCCCcccCCCc---ccchhHHHHhhhc
Q 046177 49 VSSSVRELLECPVCLNAMYPPIHQCSNGHTLCSGCKPRVH-NRCPTCRHELGN---IRCLALEKVAASL 113 (272)
Q Consensus 49 ~~~~~~~~l~CpiC~~~l~~Pv~qC~cGH~~C~~C~~~~~-~~CP~Cr~~~~~---~r~~~le~~~~~l 113 (272)
..+.+.+.+.||||++++..|+....|||+||..|+..|. ..||.||.++.. .+|..+.+++..+
T Consensus 15 ~~~~l~~~~~C~IC~~~~~~pv~~~~CgH~fC~~Ci~~~~~~~CP~Cr~~~~~~~~~~n~~l~~l~~~~ 83 (117)
T 1jm7_B 15 ALDRLEKLLRCSRCTNILREPVCLGGCEHIFCSNCVSDCIGTGCPVCYTPAWIQDLKINRQLDSMIQLC 83 (117)
T ss_dssp HHHHHHHTTSCSSSCSCCSSCBCCCSSSCCBCTTTGGGGTTTBCSSSCCBCSCSSCCCCHHHHHHHHHH
T ss_pred HHHhchhCCCCCCCChHhhCccEeCCCCCHHHHHHHHHHhcCCCcCCCCcCccccccccHHHHHHHHHH
Confidence 3456677899999999999998665799999999999984 589999999853 4677777777654
No 15
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.95 E-value=2.8e-10 Score=81.11 Aligned_cols=52 Identities=25% Similarity=0.535 Sum_probs=44.8
Q ss_pred cccCCCCeeeeccccccCcCCcccccCCceeccCccccc---CCCCCCcccCCCc
Q 046177 49 VSSSVRELLECPVCLNAMYPPIHQCSNGHTLCSGCKPRV---HNRCPTCRHELGN 100 (272)
Q Consensus 49 ~~~~~~~~l~CpiC~~~l~~Pv~qC~cGH~~C~~C~~~~---~~~CP~Cr~~~~~ 100 (272)
..+++.+.+.|+||++.+.+|+..-.|||+||..|+.+| ...||.||.++..
T Consensus 8 ~~~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~ 62 (72)
T 2djb_A 8 NLSELTPYILCSICKGYLIDATTITECLHTFCKSCIVRHFYYSNRCPKCNIVVHQ 62 (72)
T ss_dssp CCCCCCGGGSCTTTSSCCSSCEECSSSCCEECHHHHHHHHHHCSSCTTTCCCCCS
T ss_pred hHhhcCCCCCCCCCChHHHCcCEECCCCCHHHHHHHHHHHHcCCcCCCcCcccCc
Confidence 456778899999999999999755479999999999988 4789999998864
No 16
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.95 E-value=2.6e-10 Score=79.83 Aligned_cols=52 Identities=19% Similarity=0.597 Sum_probs=44.6
Q ss_pred ccccCCCCeeeeccccccCcCCcccccCCceeccCcccccC----CCCCCcccCCCc
Q 046177 48 TVSSSVRELLECPVCLNAMYPPIHQCSNGHTLCSGCKPRVH----NRCPTCRHELGN 100 (272)
Q Consensus 48 ~~~~~~~~~l~CpiC~~~l~~Pv~qC~cGH~~C~~C~~~~~----~~CP~Cr~~~~~ 100 (272)
.+.+.+.+.+.|+||++.+.+|+.. .|||+||..|+.+|. ..||.||.++..
T Consensus 7 ~~~~~~~~~~~C~IC~~~~~~p~~~-~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 62 (66)
T 2ecy_A 7 GFVKTVEDKYKCEKCHLVLCSPKQT-ECGHRFCESCMAALLSSSSPKCTACQESIVK 62 (66)
T ss_dssp CSCCSCCCCEECTTTCCEESSCCCC-SSSCCCCHHHHHHHHTTSSCCCTTTCCCCCT
T ss_pred hhhhcCCcCCCCCCCChHhcCeeEC-CCCCHHHHHHHHHHHHhCcCCCCCCCcCCCh
Confidence 4566778899999999999999865 899999999999872 579999998753
No 17
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.95 E-value=4.1e-10 Score=82.00 Aligned_cols=61 Identities=21% Similarity=0.407 Sum_probs=47.2
Q ss_pred ccCCCCeeeeccccccCcCCcccccCCceeccCccccc---CCCCCCcccCCCc--ccchhHHHHhh
Q 046177 50 SSSVRELLECPVCLNAMYPPIHQCSNGHTLCSGCKPRV---HNRCPTCRHELGN--IRCLALEKVAA 111 (272)
Q Consensus 50 ~~~~~~~l~CpiC~~~l~~Pv~qC~cGH~~C~~C~~~~---~~~CP~Cr~~~~~--~r~~~le~~~~ 111 (272)
.++..+.+.|+||++.+..|+.. .|||+||..|+.+| ...||.||.++.. ..+..+...+.
T Consensus 9 ~~~~~~~~~C~IC~~~~~~p~~~-~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~~l~~~~~ 74 (81)
T 2csy_A 9 SEEEEIPFRCFICRQAFQNPVVT-KCRHYFCESCALEHFRATPRCYICDQPTGGIFNPAKELMAKLQ 74 (81)
T ss_dssp SSCCCCCSBCSSSCSBCCSEEEC-TTSCEEEHHHHHHHHHHCSBCSSSCCBCCSCCEECHHHHHHHS
T ss_pred cccCCCCCCCcCCCchhcCeeEc-cCCCHhHHHHHHHHHHCCCcCCCcCccccccCCcHHHHHHHHH
Confidence 34566788999999999999854 89999999999988 4689999999863 33444444433
No 18
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=98.94 E-value=1.1e-10 Score=85.26 Aligned_cols=60 Identities=25% Similarity=0.641 Sum_probs=47.2
Q ss_pred cccCCCCeeeeccccccCcCCcccccCCceeccCccccc---------CCCCCCcccCCCc---ccchhHHHH
Q 046177 49 VSSSVRELLECPVCLNAMYPPIHQCSNGHTLCSGCKPRV---------HNRCPTCRHELGN---IRCLALEKV 109 (272)
Q Consensus 49 ~~~~~~~~l~CpiC~~~l~~Pv~qC~cGH~~C~~C~~~~---------~~~CP~Cr~~~~~---~r~~~le~~ 109 (272)
..+++.+.+.|+||++.+..|+.. .|||.||..|+.+| ...||.||.++.. .+|..++++
T Consensus 12 ~~~~~~~~~~C~IC~~~~~~p~~~-~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~n~~l~~~ 83 (85)
T 2ecw_A 12 VLEMIKEEVTCPICLELLKEPVSA-DCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPFGNLKPNLHVANI 83 (85)
T ss_dssp CCCCCCTTTSCTTTCSCCSSCEEC-TTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCTTCCEECSCCCSS
T ss_pred HHHhCccCCCCcCCChhhCcceeC-CCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCHHhCCcCHHHHHh
Confidence 456677889999999999999854 89999999999876 3579999998863 345444443
No 19
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.94 E-value=5.1e-10 Score=76.07 Aligned_cols=47 Identities=30% Similarity=0.537 Sum_probs=41.2
Q ss_pred CCCeeeeccccccCcCCcccccCCceeccCcccccCCCCCCcccCCCc
Q 046177 53 VRELLECPVCLNAMYPPIHQCSNGHTLCSGCKPRVHNRCPTCRHELGN 100 (272)
Q Consensus 53 ~~~~l~CpiC~~~l~~Pv~qC~cGH~~C~~C~~~~~~~CP~Cr~~~~~ 100 (272)
..+.+.|+||++.+..|+.. +|||+||..|+.++...||.||..+..
T Consensus 3 e~~~~~C~IC~~~~~~p~~l-~CgH~fC~~Ci~~~~~~CP~Cr~~~~~ 49 (56)
T 1bor_A 3 EFQFLRCQQCQAEAKCPKLL-PCLHTLCSGCLEASGMQCPICQAPWPL 49 (56)
T ss_dssp SCCCSSCSSSCSSCBCCSCS-TTSCCSBTTTCSSSSSSCSSCCSSSSC
T ss_pred cccCCCceEeCCccCCeEEc-CCCCcccHHHHccCCCCCCcCCcEeec
Confidence 35678999999999999765 799999999998887899999998753
No 20
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.91 E-value=4.7e-10 Score=79.77 Aligned_cols=51 Identities=25% Similarity=0.780 Sum_probs=44.0
Q ss_pred cccCCCCeeeeccccccCcCCcccccCCceeccCcccccC------CCCCCcccCCCc
Q 046177 49 VSSSVRELLECPVCLNAMYPPIHQCSNGHTLCSGCKPRVH------NRCPTCRHELGN 100 (272)
Q Consensus 49 ~~~~~~~~l~CpiC~~~l~~Pv~qC~cGH~~C~~C~~~~~------~~CP~Cr~~~~~ 100 (272)
..+.+.+.+.|+||++.+..|+.. .|||.||..|+.+|. ..||.||.++..
T Consensus 13 ~~~~~~~~~~C~IC~~~~~~~~~~-~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 69 (73)
T 2ysl_A 13 FVNKLQEEVICPICLDILQKPVTI-DCGHNFCLKCITQIGETSCGFFKCPLCKTSVRK 69 (73)
T ss_dssp CCCCCCCCCBCTTTCSBCSSEEEC-TTCCEEEHHHHHHHCSSSCSCCCCSSSCCCCCC
T ss_pred HHHhCccCCEeccCCcccCCeEEc-CCCChhhHHHHHHHHHcCCCCCCCCCCCCcCCc
Confidence 456778889999999999999866 899999999999884 279999998753
No 21
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=98.91 E-value=1.1e-10 Score=88.78 Aligned_cols=62 Identities=24% Similarity=0.520 Sum_probs=48.6
Q ss_pred ccCCCCeeeeccccccCcCCcccccCCceeccCccccc---C-CCCCCcccCCCc---ccchhHHHHhh
Q 046177 50 SSSVRELLECPVCLNAMYPPIHQCSNGHTLCSGCKPRV---H-NRCPTCRHELGN---IRCLALEKVAA 111 (272)
Q Consensus 50 ~~~~~~~l~CpiC~~~l~~Pv~qC~cGH~~C~~C~~~~---~-~~CP~Cr~~~~~---~r~~~le~~~~ 111 (272)
.+.+.+.+.|+||++++..|+..-.|||+||..|+.+| . ..||.||.++.. .+++.++.++.
T Consensus 16 ~~~l~~~~~C~IC~~~~~~p~~~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~~l~~~~~~~~i~~ 84 (100)
T 3lrq_A 16 VESIAEVFRCFICMEKLRDARLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQLRELVNCRWAEEVTQ 84 (100)
T ss_dssp HHHHHHHTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCEECTTHHHHHH
T ss_pred cccCCCCCCCccCCccccCccccCCCCChhhHHHHHHHHHHCcCCCCCCCCcCCHHHhHhhHHHHHHHH
Confidence 45667889999999999999862479999999999998 3 589999999864 34555544443
No 22
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=98.90 E-value=1.2e-10 Score=91.80 Aligned_cols=64 Identities=31% Similarity=0.621 Sum_probs=52.9
Q ss_pred ccCCCCeeeeccccccCcCCcccccCCceeccCcccccC----CCCCCcccCCCc----ccchhHHHHhhhcC
Q 046177 50 SSSVRELLECPVCLNAMYPPIHQCSNGHTLCSGCKPRVH----NRCPTCRHELGN----IRCLALEKVAASLE 114 (272)
Q Consensus 50 ~~~~~~~l~CpiC~~~l~~Pv~qC~cGH~~C~~C~~~~~----~~CP~Cr~~~~~----~r~~~le~~~~~l~ 114 (272)
.+.+.+.+.||||++++.+|+.. .|||+||..|+..|. ..||.||.++.. .+|..+.+++..+.
T Consensus 46 ~~~~~~~~~C~IC~~~~~~p~~~-~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~n~~l~~~i~~~~ 117 (124)
T 3fl2_A 46 LSKVEETFQCICCQELVFRPITT-VCQHNVCKDCLDRSFRAQVFSCPACRYDLGRSYAMQVNQPLQTVLNQLF 117 (124)
T ss_dssp HHHHHHHTBCTTTSSBCSSEEEC-TTSCEEEHHHHHHHHHTTCCBCTTTCCBCCTTCCCCCCHHHHHHHHHHS
T ss_pred HHhCccCCCCCcCChHHcCcEEe-eCCCcccHHHHHHHHhHCcCCCCCCCccCCCCCCCCCCHHHHHHHHHHc
Confidence 45567789999999999999865 899999999998872 489999999864 56788888887653
No 23
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=98.89 E-value=6.7e-10 Score=79.61 Aligned_cols=49 Identities=22% Similarity=0.573 Sum_probs=42.4
Q ss_pred ccCCCCeeeeccccccCcCCccccc-CCceeccCcccccC-----CCCCCcccCCC
Q 046177 50 SSSVRELLECPVCLNAMYPPIHQCS-NGHTLCSGCKPRVH-----NRCPTCRHELG 99 (272)
Q Consensus 50 ~~~~~~~l~CpiC~~~l~~Pv~qC~-cGH~~C~~C~~~~~-----~~CP~Cr~~~~ 99 (272)
.+++.+.+.|+||++++.+|+.. . |||+||..|+.+|. ..||.||.++.
T Consensus 9 ~~~~~~~~~C~IC~~~~~~p~~~-~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~ 63 (74)
T 2yur_A 9 DDPIPDELLCLICKDIMTDAVVI-PCCGNSYCDECIRTALLESDEHTCPTCHQNDV 63 (74)
T ss_dssp CCCSCGGGSCSSSCCCCTTCEEC-SSSCCEECTTHHHHHHHHSSSSCCSSSCCSSC
T ss_pred cccCCCCCCCcCCChHHhCCeEc-CCCCCHHHHHHHHHHHHhcCCCcCCCCCCcCC
Confidence 46677889999999999999865 7 99999999999982 48999999754
No 24
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=98.89 E-value=2.9e-10 Score=91.37 Aligned_cols=58 Identities=22% Similarity=0.572 Sum_probs=45.2
Q ss_pred CCCCeeeeccccccCcCCcccccCCceeccCccccc---CCCCCCcccCCCc-ccchhHHHHh
Q 046177 52 SVRELLECPVCLNAMYPPIHQCSNGHTLCSGCKPRV---HNRCPTCRHELGN-IRCLALEKVA 110 (272)
Q Consensus 52 ~~~~~l~CpiC~~~l~~Pv~qC~cGH~~C~~C~~~~---~~~CP~Cr~~~~~-~r~~~le~~~ 110 (272)
.+.+.+.||||++.+.+|+.. +|||.||..|+.+| ...||.||.++.. ..+..+...+
T Consensus 49 ~~~~~~~C~iC~~~~~~~~~~-~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~i 110 (138)
T 4ayc_A 49 VLENELQCIICSEYFIEAVTL-NCAHSFCSYCINEWMKRKIECPICRKDIKSKTYSLVLDNCI 110 (138)
T ss_dssp HHHHHSBCTTTCSBCSSEEEE-TTSCEEEHHHHHHHTTTCSBCTTTCCBCCCEEECHHHHHHH
T ss_pred hccccCCCcccCcccCCceEC-CCCCCccHHHHHHHHHcCCcCCCCCCcCCCCCCccchhHHH
Confidence 345678999999999999865 89999999999988 3789999999864 2333333333
No 25
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=98.88 E-value=2.6e-10 Score=87.64 Aligned_cols=65 Identities=18% Similarity=0.369 Sum_probs=52.9
Q ss_pred ccCCCCeeeeccccccCcCCcccccCCceeccCccccc---CCCCCCcccCCCc-------ccchhHHHHhhhcC
Q 046177 50 SSSVRELLECPVCLNAMYPPIHQCSNGHTLCSGCKPRV---HNRCPTCRHELGN-------IRCLALEKVAASLE 114 (272)
Q Consensus 50 ~~~~~~~l~CpiC~~~l~~Pv~qC~cGH~~C~~C~~~~---~~~CP~Cr~~~~~-------~r~~~le~~~~~l~ 114 (272)
.+++.+.+.|+||++.+.+|+....|||+||..|+.+| ...||.||..+.. ..|..+.+++..+.
T Consensus 9 ~~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~l~~n~~l~~~i~~~~ 83 (108)
T 2ckl_A 9 ITELNPHLMCVLCGGYFIDATTIIECLHSFCKTCIVRYLETSKYCPICDVQVHKTRPLLNIRSDKTLQDIVYKLV 83 (108)
T ss_dssp HHHHGGGTBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHTSCSBCTTTCCBSCSSCGGGGEEECHHHHHHHHHHS
T ss_pred hhccCCcCCCccCChHHhCcCEeCCCCChhhHHHHHHHHHhCCcCcCCCccccccCcccccCcCHHHHHHHHHHh
Confidence 35567889999999999999854479999999999988 3689999998764 35677777777653
No 26
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=98.86 E-value=2.6e-10 Score=93.20 Aligned_cols=65 Identities=26% Similarity=0.602 Sum_probs=54.2
Q ss_pred cccCCCCeeeeccccccCcCCcccccCCceeccCcccccC----CCCCCcccCCCc----ccchhHHHHhhhcC
Q 046177 49 VSSSVRELLECPVCLNAMYPPIHQCSNGHTLCSGCKPRVH----NRCPTCRHELGN----IRCLALEKVAASLE 114 (272)
Q Consensus 49 ~~~~~~~~l~CpiC~~~l~~Pv~qC~cGH~~C~~C~~~~~----~~CP~Cr~~~~~----~r~~~le~~~~~l~ 114 (272)
+.+.+.+.+.|+||++++.+|+.. .|||+||..|+.+|. ..||.||.++.. .+|..+++++..+.
T Consensus 71 ~~~~l~~~~~C~IC~~~~~~pv~~-~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~l~~n~~l~~lv~~~~ 143 (150)
T 1z6u_A 71 FLKKLEQSFMCVCCQELVYQPVTT-ECFHNVCKDCLQRSFKAQVFSCPACRHDLGQNYIMIPNEILQTLLDLFF 143 (150)
T ss_dssp HHHHHHHHTBCTTTSSBCSSEEEC-TTSCEEEHHHHHHHHHTTCCBCTTTCCBCCTTCCCCBCHHHHHHHHHHS
T ss_pred HHHhCccCCEeecCChhhcCCEEc-CCCCchhHHHHHHHHHhCCCcCCCCCccCCCCCCCCCCHHHHHHHHHHh
Confidence 445567789999999999999865 899999999999882 379999999874 47888888887664
No 27
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=98.85 E-value=6.3e-10 Score=91.89 Aligned_cols=64 Identities=23% Similarity=0.545 Sum_probs=53.1
Q ss_pred cCCCCeeeeccccccCcCCcccccCCceeccCccccc----CCCCCCcccCCCc----ccchhHHHHhhhcC
Q 046177 51 SSVRELLECPVCLNAMYPPIHQCSNGHTLCSGCKPRV----HNRCPTCRHELGN----IRCLALEKVAASLE 114 (272)
Q Consensus 51 ~~~~~~l~CpiC~~~l~~Pv~qC~cGH~~C~~C~~~~----~~~CP~Cr~~~~~----~r~~~le~~~~~l~ 114 (272)
+.+.+.+.||||++.+.+|+....|||+||..|+.+| ...||.||.++.. .+|..+++++..+.
T Consensus 49 ~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~l~~~~~l~~~i~~~~ 120 (165)
T 2ckl_B 49 RSLHSELMCPICLDMLKNTMTTKECLHRFCADCIITALRSGNKECPTCRKKLVSKRSLRPDPNFDALISKIY 120 (165)
T ss_dssp -CCHHHHBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHHTTCCBCTTTCCBCCSGGGEEECHHHHHHHHHHC
T ss_pred hhCCCCCCCcccChHhhCcCEeCCCCChhHHHHHHHHHHhCcCCCCCCCCcCCCcccCCcCHHHHHHHHHHH
Confidence 4556788999999999999865589999999999998 3579999999853 46788888888775
No 28
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.81 E-value=1.5e-09 Score=77.00 Aligned_cols=48 Identities=27% Similarity=0.657 Sum_probs=41.3
Q ss_pred cCCCCeeeeccccccCcCCcccccCCceeccCccccc---CCCCCCcccCCC
Q 046177 51 SSVRELLECPVCLNAMYPPIHQCSNGHTLCSGCKPRV---HNRCPTCRHELG 99 (272)
Q Consensus 51 ~~~~~~l~CpiC~~~l~~Pv~qC~cGH~~C~~C~~~~---~~~CP~Cr~~~~ 99 (272)
+...+.+.|+||++.+..|+.. .|||.||..|+.+| ...||.||..+.
T Consensus 10 ~~~~~~~~C~IC~~~~~~~~~~-~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 60 (71)
T 2d8t_A 10 APSLTVPECAICLQTCVHPVSL-PCKHVFCYLCVKGASWLGKRCALCRQEIP 60 (71)
T ss_dssp CSSSSCCBCSSSSSBCSSEEEE-TTTEEEEHHHHHHCTTCSSBCSSSCCBCC
T ss_pred ccCCCCCCCccCCcccCCCEEc-cCCCHHHHHHHHHHHHCCCcCcCcCchhC
Confidence 3446778999999999999865 89999999999987 368999999885
No 29
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=98.80 E-value=1.6e-09 Score=78.90 Aligned_cols=51 Identities=25% Similarity=0.722 Sum_probs=40.7
Q ss_pred ccCCCCeeeeccccccCc--CCc-ccccCCceeccCccccc----CCCCCCcccCCCc
Q 046177 50 SSSVRELLECPVCLNAMY--PPI-HQCSNGHTLCSGCKPRV----HNRCPTCRHELGN 100 (272)
Q Consensus 50 ~~~~~~~l~CpiC~~~l~--~Pv-~qC~cGH~~C~~C~~~~----~~~CP~Cr~~~~~ 100 (272)
.+++.+.+.||||++++. ++. +.|.|||.||..|+.++ ...||.||.++..
T Consensus 5 ~~~~~~~~~CpICle~~~~~d~~~~p~~CGH~fC~~Cl~~~~~~~~~~CP~CR~~~~~ 62 (78)
T 1e4u_A 5 PDAKEDPVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYPE 62 (78)
T ss_dssp SCCCCCCCBCTTTCCBCCTTTTTCCSSTTSCCCCHHHHHHHTTSSCSBCTTTCCBCSS
T ss_pred ccccccCCcCCccCccCccccccccccCCCCCcCHHHHHHHHhcCCCCCCCCCCccCC
Confidence 456778899999999984 343 34569999999999886 3689999998864
No 30
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.77 E-value=2.4e-09 Score=94.61 Aligned_cols=63 Identities=19% Similarity=0.193 Sum_probs=53.6
Q ss_pred cCCCCeeeeccccccCcCCcccccCCceeccCccccc----CCCCCCcccCCCc---ccchhHHHHhhhcC
Q 046177 51 SSVRELLECPVCLNAMYPPIHQCSNGHTLCSGCKPRV----HNRCPTCRHELGN---IRCLALEKVAASLE 114 (272)
Q Consensus 51 ~~~~~~l~CpiC~~~l~~Pv~qC~cGH~~C~~C~~~~----~~~CP~Cr~~~~~---~r~~~le~~~~~l~ 114 (272)
.++++.+.||||.++|.+||.. +|||+||..|+.+| ...||.|+.++.. .+|..+.+++..+.
T Consensus 203 ~~~~~~~~c~i~~~~~~dPv~~-~~gh~f~~~~i~~~~~~~~~~cP~~~~~~~~~~l~~n~~l~~~i~~~~ 272 (281)
T 2c2l_A 203 RDIPDYLCGKISFELMREPCIT-PSGITYDRKDIEEHLQRVGHFNPVTRSPLTQEQLIPNLAMKEVIDAFI 272 (281)
T ss_dssp CCCCSTTBCTTTCSBCSSEEEC-SSCCEEETTHHHHHHHHTCSSCTTTCCCCCGGGCEECHHHHHHHHHHH
T ss_pred CCCCcccCCcCcCCHhcCCeEC-CCCCEECHHHHHHHHHHCCCCCcCCCCCCchhcCcccHHHHHHHHHHH
Confidence 4567889999999999999865 79999999999987 2349999999874 67889999888764
No 31
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.77 E-value=3e-09 Score=73.53 Aligned_cols=45 Identities=29% Similarity=0.852 Sum_probs=39.0
Q ss_pred cccCCCCeeeeccccccCcCCcccccCCceeccCcccccC------CCCCCc
Q 046177 49 VSSSVRELLECPVCLNAMYPPIHQCSNGHTLCSGCKPRVH------NRCPTC 94 (272)
Q Consensus 49 ~~~~~~~~l~CpiC~~~l~~Pv~qC~cGH~~C~~C~~~~~------~~CP~C 94 (272)
+.+.+.+.+.|+||++.+.+|+.. .|||+||..|+.+|. ..||.|
T Consensus 13 ~~~~~~~~~~C~IC~~~~~~p~~~-~CgH~fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 13 FVNKLQEEVICPICLDILQKPVTI-DCGHNFCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCCCCCCCCBCTTTCSBCSSCEEC-TTSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred HHHhCccCCCCCcCCchhCCeEEe-CCCCcchHHHHHHHHHcCCCCCcCcCC
Confidence 456778899999999999999866 899999999999882 379987
No 32
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=98.76 E-value=2.3e-09 Score=83.18 Aligned_cols=48 Identities=25% Similarity=0.617 Sum_probs=41.7
Q ss_pred cCCCCeeeeccccccCcCCcccccCCceeccCcccccC----CCCCCcccCCC
Q 046177 51 SSVRELLECPVCLNAMYPPIHQCSNGHTLCSGCKPRVH----NRCPTCRHELG 99 (272)
Q Consensus 51 ~~~~~~l~CpiC~~~l~~Pv~qC~cGH~~C~~C~~~~~----~~CP~Cr~~~~ 99 (272)
..+.+.+.|+||++.+..|+.. .|||+||..|+.+|. ..||.||..+.
T Consensus 10 ~~~~~~~~C~iC~~~~~~p~~~-~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 61 (115)
T 3l11_A 10 IPSLSECQCGICMEILVEPVTL-PCNHTLCKPCFQSTVEKASLCCPFCRRRVS 61 (115)
T ss_dssp CCCHHHHBCTTTCSBCSSCEEC-TTSCEECHHHHCCCCCTTTSBCTTTCCBCH
T ss_pred cCCCCCCCCccCCcccCceeEc-CCCCHHhHHHHHHHHhHCcCCCCCCCcccC
Confidence 4456789999999999999866 899999999999883 47999999875
No 33
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.76 E-value=1.7e-09 Score=81.35 Aligned_cols=63 Identities=25% Similarity=0.440 Sum_probs=51.2
Q ss_pred CCCCeeeeccccccCcCCcccccCCceeccCcccccC---------CCCCC--cccC-CCc---ccchhHHHHhhhcC
Q 046177 52 SVRELLECPVCLNAMYPPIHQCSNGHTLCSGCKPRVH---------NRCPT--CRHE-LGN---IRCLALEKVAASLE 114 (272)
Q Consensus 52 ~~~~~l~CpiC~~~l~~Pv~qC~cGH~~C~~C~~~~~---------~~CP~--Cr~~-~~~---~r~~~le~~~~~l~ 114 (272)
...+.|.||||+++|.+||..-.|||+||+.|+.+|. ..||. |+.. +.. .+|..|.+++..++
T Consensus 3 ~~~~~~~CPI~~~~~~dPV~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~~l~~~~L~pn~~L~~~I~~~~ 80 (94)
T 2yu4_A 3 SGSSGFTCPITKEEMKKPVKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHTDIRKSDLIQDEALRRAIENHN 80 (94)
T ss_dssp SCSSCCBCTTTCSBCSSEEEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCCCBCGGGEEECHHHHHHHHHHH
T ss_pred CCCcEeECcCcCchhcCCEEcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCcccccCHhhCcCCHHHHHHHHHHH
Confidence 4567899999999999998652499999999999882 28999 9866 543 67889999888764
No 34
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.74 E-value=3.4e-09 Score=77.86 Aligned_cols=50 Identities=34% Similarity=0.810 Sum_probs=42.7
Q ss_pred ccCCCCeeeeccccccCcC----CcccccCCceeccCccccc---C---CCCCCcccCCCc
Q 046177 50 SSSVRELLECPVCLNAMYP----PIHQCSNGHTLCSGCKPRV---H---NRCPTCRHELGN 100 (272)
Q Consensus 50 ~~~~~~~l~CpiC~~~l~~----Pv~qC~cGH~~C~~C~~~~---~---~~CP~Cr~~~~~ 100 (272)
.+.+.+.+.|+||++.+.. |+.. .|||.||..|+.+| . ..||.||.++..
T Consensus 9 ~~~~~~~~~C~IC~~~~~~~~~~~~~~-~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 68 (88)
T 2ct2_A 9 LDALREVLECPICMESFTEEQLRPKLL-HCGHTICRQCLEKLLASSINGVRCPFCSKITRI 68 (88)
T ss_dssp CCCCCSCCBCTTTCCBCCTTSSCEEEC-SSSCEEEHHHHHHHHHHCSSCBCCTTTCCCBCC
T ss_pred hhhccCCCCCccCCccccccCCCeEEC-CCCChhhHHHHHHHHHcCCCCcCCCCCCCcccc
Confidence 4667788999999999998 8755 89999999999988 2 589999998753
No 35
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.74 E-value=2e-09 Score=75.36 Aligned_cols=50 Identities=28% Similarity=0.729 Sum_probs=41.4
Q ss_pred ccCCCCeeeeccccccCcCCc------ccccCCceeccCccccc---CCCCCCcccCCC
Q 046177 50 SSSVRELLECPVCLNAMYPPI------HQCSNGHTLCSGCKPRV---HNRCPTCRHELG 99 (272)
Q Consensus 50 ~~~~~~~l~CpiC~~~l~~Pv------~qC~cGH~~C~~C~~~~---~~~CP~Cr~~~~ 99 (272)
.+.+.+.+.|+||++.+..|. ..-.|||.||..|+.+| ...||.||.++.
T Consensus 9 ~~~~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 67 (69)
T 2ea6_A 9 GLRPSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKIN 67 (69)
T ss_dssp CCCTTCCCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHHCSSCTTTCCCCC
T ss_pred ccCCCCCCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHcCCCCCCCCCccC
Confidence 455678899999999998871 24479999999999998 478999999875
No 36
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.74 E-value=6.6e-10 Score=85.50 Aligned_cols=49 Identities=27% Similarity=0.870 Sum_probs=41.3
Q ss_pred cCCCCeeeeccccccCcCCcccccCCceeccCcccccC------CCCCCcccCCCc
Q 046177 51 SSVRELLECPVCLNAMYPPIHQCSNGHTLCSGCKPRVH------NRCPTCRHELGN 100 (272)
Q Consensus 51 ~~~~~~l~CpiC~~~l~~Pv~qC~cGH~~C~~C~~~~~------~~CP~Cr~~~~~ 100 (272)
+.+.+.+.|+||++.+..|+.. .|||.||..|+.+|. ..||.||.++..
T Consensus 16 ~~~~~~~~C~IC~~~~~~p~~~-~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 70 (112)
T 1jm7_A 16 NAMQKILECPICLELIKEPVST-KCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITK 70 (112)
T ss_dssp HHHHHHTSCSSSCCCCSSCCBC-TTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCT
T ss_pred HhccCCCCCcccChhhcCeEEC-CCCCHHHHHHHHHHHHhCCCCCCCcCCCCcCCH
Confidence 3455678999999999999865 899999999999872 379999998864
No 37
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.70 E-value=6e-09 Score=70.53 Aligned_cols=46 Identities=28% Similarity=0.697 Sum_probs=38.7
Q ss_pred ccccCCCCeeeeccccccCcCCcccccCCceeccCccccc------CCCCCCc
Q 046177 48 TVSSSVRELLECPVCLNAMYPPIHQCSNGHTLCSGCKPRV------HNRCPTC 94 (272)
Q Consensus 48 ~~~~~~~~~l~CpiC~~~l~~Pv~qC~cGH~~C~~C~~~~------~~~CP~C 94 (272)
...+.+.+.+.|+||++.+.+|+.. .|||+||..|+.+| ...||.|
T Consensus 7 ~~~~~~~~~~~C~IC~~~~~~p~~~-~CgH~fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 7 GALENLQVEASCSVCLEYLKEPVII-ECGHNFCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp SCSSCSCCCCBCSSSCCBCSSCCCC-SSCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred hHhhccccCCCCccCCcccCccEeC-CCCCccCHHHHHHHHHhcCCCCCCCCC
Confidence 3456677889999999999999765 89999999999988 1568887
No 38
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=98.67 E-value=6e-09 Score=87.37 Aligned_cols=64 Identities=19% Similarity=0.179 Sum_probs=54.5
Q ss_pred ccCCCCeeeeccccccCcCCcccccCCceeccCccccc---C-CCCCCcccCCCc---ccchhHHHHhhhcC
Q 046177 50 SSSVRELLECPVCLNAMYPPIHQCSNGHTLCSGCKPRV---H-NRCPTCRHELGN---IRCLALEKVAASLE 114 (272)
Q Consensus 50 ~~~~~~~l~CpiC~~~l~~Pv~qC~cGH~~C~~C~~~~---~-~~CP~Cr~~~~~---~r~~~le~~~~~l~ 114 (272)
...+++.|.||||.++|.+||.. +|||+||..|+.+| . ..||.|+.++.. .+|..+.+++..+.
T Consensus 100 ~~~ip~~f~CPI~~elm~DPV~~-~~Ghtfer~~I~~~l~~~~~tcP~t~~~l~~~~L~pN~~Lk~~Ie~~~ 170 (179)
T 2f42_A 100 KREIPDYLCGKISFELMREPCIT-PSGITYDRKDIEEHLQRVGHFDPVTRSPLTQDQLIPNLAMKEVIDAFI 170 (179)
T ss_dssp CCCCCGGGBCTTTCSBCSSEEEC-TTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCEECHHHHHHHHHHH
T ss_pred ccCCcHhhcccCccccCCCCeEC-CCCCEECHHHHHHHHHhCCCCCCCCcCCCChhhCcchHHHHHHHHHHH
Confidence 35678999999999999999866 79999999999997 2 359999999874 67888888887763
No 39
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=98.67 E-value=2.7e-09 Score=75.26 Aligned_cols=49 Identities=29% Similarity=0.763 Sum_probs=40.7
Q ss_pred CCCCeeeeccccccCcCCc------ccccCCceeccCccccc---CCCCCCcccCCCc
Q 046177 52 SVRELLECPVCLNAMYPPI------HQCSNGHTLCSGCKPRV---HNRCPTCRHELGN 100 (272)
Q Consensus 52 ~~~~~l~CpiC~~~l~~Pv------~qC~cGH~~C~~C~~~~---~~~CP~Cr~~~~~ 100 (272)
...+.+.|+||++.+..|+ ..-.|||.||..|+.+| ...||.||.++..
T Consensus 6 ~~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 63 (71)
T 3ng2_A 6 RPSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINH 63 (71)
T ss_dssp CCTTCCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHHCSBCTTTCCBCCC
T ss_pred CCCCCCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHcCCCCCCCCCccCh
Confidence 4457789999999998872 34479999999999988 4789999998864
No 40
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.63 E-value=1.7e-08 Score=72.27 Aligned_cols=49 Identities=22% Similarity=0.521 Sum_probs=40.0
Q ss_pred CCCCeeeeccccccCcCC--cccccCCceeccCccccc---CCCCCCcccCCCc
Q 046177 52 SVRELLECPVCLNAMYPP--IHQCSNGHTLCSGCKPRV---HNRCPTCRHELGN 100 (272)
Q Consensus 52 ~~~~~l~CpiC~~~l~~P--v~qC~cGH~~C~~C~~~~---~~~CP~Cr~~~~~ 100 (272)
...+...|+||++.+..+ +..-.|||.||..|+.+| ...||.||.++..
T Consensus 19 ~~~~~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~~~~CP~Cr~~~~~ 72 (75)
T 1x4j_A 19 HQSEQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKANRTCPICRADSGP 72 (75)
T ss_dssp CSSSCCEETTTTEECCBTCEEEEETTTEEEETTHHHHHHHHCSSCTTTCCCCCC
T ss_pred ccCCCCCCeECCcccCCCCeEEEECCCCHhHHHHHHHHHHcCCcCcCcCCcCCC
Confidence 345678999999999877 333369999999999998 4789999998753
No 41
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=98.61 E-value=2.3e-08 Score=66.92 Aligned_cols=47 Identities=28% Similarity=0.571 Sum_probs=37.8
Q ss_pred CCCeeeeccccccCcC---CcccccCCceeccCccccc---CCCCCCcccCCC
Q 046177 53 VRELLECPVCLNAMYP---PIHQCSNGHTLCSGCKPRV---HNRCPTCRHELG 99 (272)
Q Consensus 53 ~~~~l~CpiC~~~l~~---Pv~qC~cGH~~C~~C~~~~---~~~CP~Cr~~~~ 99 (272)
+.+...|+||++.+.. ++..-.|||.||..|+.+| ...||.||.++.
T Consensus 2 ~~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~~~CP~Cr~~~~ 54 (55)
T 1iym_A 2 MDDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTVV 54 (55)
T ss_dssp CCCSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTTCCSCSSSCCCSC
T ss_pred CCCCCcCccCCccccCCCceEECCCCCCcccHHHHHHHHHcCCcCcCCCCEeE
Confidence 3566789999999977 5433239999999999998 478999998763
No 42
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=98.61 E-value=2.8e-08 Score=71.49 Aligned_cols=51 Identities=31% Similarity=0.576 Sum_probs=41.0
Q ss_pred ccCCCCeeeeccccccCcCCc--ccccCCceeccCccccc---CCCCCCcccCCCc
Q 046177 50 SSSVRELLECPVCLNAMYPPI--HQCSNGHTLCSGCKPRV---HNRCPTCRHELGN 100 (272)
Q Consensus 50 ~~~~~~~l~CpiC~~~l~~Pv--~qC~cGH~~C~~C~~~~---~~~CP~Cr~~~~~ 100 (272)
.+...+.+.|+||++.+..|. ..-.|||.||..|+.+| ...||.||..+..
T Consensus 9 ~~~~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 64 (78)
T 2ect_A 9 EEHVGSGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQHDSCPVCRKSLTG 64 (78)
T ss_dssp CTTSSSSCCCTTTTSCCCTTSCEEECTTSCEEETTTTHHHHTTTCSCTTTCCCCCC
T ss_pred cccCCCCCCCeeCCccccCCCCEEEeCCCCeecHHHHHHHHHcCCcCcCcCCccCC
Confidence 345567789999999998662 23379999999999988 4689999998864
No 43
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.58 E-value=9.1e-09 Score=72.52 Aligned_cols=49 Identities=22% Similarity=0.651 Sum_probs=41.4
Q ss_pred ccCCCCeeeeccccccCcCCcccccCCceeccCccccc---CCCCCCcccCCCc
Q 046177 50 SSSVRELLECPVCLNAMYPPIHQCSNGHTLCSGCKPRV---HNRCPTCRHELGN 100 (272)
Q Consensus 50 ~~~~~~~l~CpiC~~~l~~Pv~qC~cGH~~C~~C~~~~---~~~CP~Cr~~~~~ 100 (272)
.+++.+.+.|+||++.+.+ +.. +|||.||..|+.+| ...||.||.++..
T Consensus 9 ~~~~~~~~~C~IC~~~~~~-~~~-~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 60 (70)
T 2ecn_A 9 VKQLTDEEECCICMDGRAD-LIL-PCAHSFCQKCIDKWSDRHRNCPICRLQMTG 60 (70)
T ss_dssp CCCCCCCCCCSSSCCSCCS-EEE-TTTEEECHHHHHHSSCCCSSCHHHHHCTTC
T ss_pred hhcCCCCCCCeeCCcCccC-ccc-CCCCcccHHHHHHHHHCcCcCCCcCCcccC
Confidence 4566778999999999988 544 89999999999988 3689999998864
No 44
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.57 E-value=7.4e-09 Score=72.04 Aligned_cols=46 Identities=30% Similarity=0.658 Sum_probs=37.9
Q ss_pred Ceeeeccccc-cCcCCc---ccccCCceeccCccccc----CCCCCCcccCCCc
Q 046177 55 ELLECPVCLN-AMYPPI---HQCSNGHTLCSGCKPRV----HNRCPTCRHELGN 100 (272)
Q Consensus 55 ~~l~CpiC~~-~l~~Pv---~qC~cGH~~C~~C~~~~----~~~CP~Cr~~~~~ 100 (272)
+.+.||||++ .+..|. ..-.|||+||..|+.+| ...||.||.++..
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 55 (65)
T 1g25_A 2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLRK 55 (65)
T ss_dssp CTTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTTSSSCTTTCCCCSS
T ss_pred CCCcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHHcCCCcCCCCCCcccc
Confidence 4578999999 898884 23379999999999988 2579999998863
No 45
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=98.57 E-value=2.4e-08 Score=69.84 Aligned_cols=46 Identities=24% Similarity=0.522 Sum_probs=38.9
Q ss_pred CeeeeccccccCcCCcccccCCceeccCccccc---CCCCCCcccCCCc
Q 046177 55 ELLECPVCLNAMYPPIHQCSNGHTLCSGCKPRV---HNRCPTCRHELGN 100 (272)
Q Consensus 55 ~~l~CpiC~~~l~~Pv~qC~cGH~~C~~C~~~~---~~~CP~Cr~~~~~ 100 (272)
+...|+||++.+.+|+..-+|||.||..|+.+| ...||.||.++..
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 52 (68)
T 1chc_A 4 VAERCPICLEDPSNYSMALPCLHAFCYVCITRWIRQNPTCPLCKVPVES 52 (68)
T ss_dssp CCCCCSSCCSCCCSCEEETTTTEEESTTHHHHHHHHSCSTTTTCCCCCC
T ss_pred CCCCCeeCCccccCCcEecCCCCeeHHHHHHHHHhCcCcCcCCChhhHh
Confidence 456899999999998444479999999999987 4789999998864
No 46
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=98.57 E-value=6.6e-09 Score=71.59 Aligned_cols=46 Identities=30% Similarity=0.864 Sum_probs=38.3
Q ss_pred CeeeeccccccCcCCc------ccccCCceeccCccccc---CCCCCCcccCCCc
Q 046177 55 ELLECPVCLNAMYPPI------HQCSNGHTLCSGCKPRV---HNRCPTCRHELGN 100 (272)
Q Consensus 55 ~~l~CpiC~~~l~~Pv------~qC~cGH~~C~~C~~~~---~~~CP~Cr~~~~~ 100 (272)
+.+.|+||++.+..|. ....|||.||..|+.+| ...||.||.++..
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 56 (64)
T 2xeu_A 2 AMVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINH 56 (64)
T ss_dssp CCCBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHHCSBCTTTCCBCTT
T ss_pred CCCCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHcCCCCCCCCccCCc
Confidence 4678999999998772 34479999999999988 4689999998864
No 47
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=98.57 E-value=4.3e-09 Score=75.51 Aligned_cols=48 Identities=23% Similarity=0.605 Sum_probs=42.2
Q ss_pred cCCCCeeeeccccccCcCCcccccCCce-eccCcccccCCCCCCcccCCCc
Q 046177 51 SSVRELLECPVCLNAMYPPIHQCSNGHT-LCSGCKPRVHNRCPTCRHELGN 100 (272)
Q Consensus 51 ~~~~~~l~CpiC~~~l~~Pv~qC~cGH~-~C~~C~~~~~~~CP~Cr~~~~~ 100 (272)
+.+.+.+.|+||++.+.+|++. +|||. ||..|+.+| ..||.||.++..
T Consensus 19 ~~~~~~~~C~iC~~~~~~~~~~-pCgH~~~C~~C~~~~-~~CP~Cr~~i~~ 67 (74)
T 4ic3_A 19 RRLQEEKLCKICMDRNIAIVFV-PCGHLVTCKQCAEAV-DKCPMCYTVITF 67 (74)
T ss_dssp HHHHHHTBCTTTSSSBCCEEEE-TTCCBCCCHHHHTTC-SBCTTTCCBCSE
T ss_pred hcCccCCCCCCCCCCCCCEEEc-CCCChhHHHHhhhcC-ccCCCcCcCccC
Confidence 3455678999999999999877 89999 999999998 799999998864
No 48
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.56 E-value=2.9e-08 Score=70.64 Aligned_cols=51 Identities=22% Similarity=0.450 Sum_probs=41.5
Q ss_pred ccCCCCeeeeccccccCcCCc--ccccCCceeccCccccc---CCCCCCcccCCCc
Q 046177 50 SSSVRELLECPVCLNAMYPPI--HQCSNGHTLCSGCKPRV---HNRCPTCRHELGN 100 (272)
Q Consensus 50 ~~~~~~~l~CpiC~~~l~~Pv--~qC~cGH~~C~~C~~~~---~~~CP~Cr~~~~~ 100 (272)
..++.+...|+||++.+..|. ....|||.||..|+.+| ...||.||.++..
T Consensus 9 ~~~~~~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~~~~CP~Cr~~~~~ 64 (74)
T 2ep4_A 9 VKELNLHELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEVRKVCPLCNMPVLQ 64 (74)
T ss_dssp CCCCCCSCBCSSSCCBCCSSSCEEEETTTEEEEHHHHHHHHHHCSBCTTTCCBCSS
T ss_pred cccCCCCCCCcCCCcccCCCCcEEEcCCCCEecHHHHHHHHHcCCcCCCcCccccc
Confidence 345667789999999998773 23379999999999998 4789999998864
No 49
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=98.54 E-value=3.5e-08 Score=69.27 Aligned_cols=50 Identities=18% Similarity=0.501 Sum_probs=39.5
Q ss_pred cCCCCeeeeccccccCcC--CcccccCCceeccCccccc---CCCCCCcccCCCc
Q 046177 51 SSVRELLECPVCLNAMYP--PIHQCSNGHTLCSGCKPRV---HNRCPTCRHELGN 100 (272)
Q Consensus 51 ~~~~~~l~CpiC~~~l~~--Pv~qC~cGH~~C~~C~~~~---~~~CP~Cr~~~~~ 100 (272)
++..+...|+||++.+.. ++....|||.||..|+.+| ...||.||..+..
T Consensus 9 ~~~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 63 (69)
T 2kiz_A 9 TEEDTEEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITNKKCPICRVDIEA 63 (69)
T ss_dssp CSTTCCCSBTTTTBCCCSSSCEEECTTSCEEEHHHHHHHHHHCSBCTTTCSBSCS
T ss_pred CcCCCCCCCeeCCccccCCCcEEEeCCCCHHHHHHHHHHHHcCCCCcCcCccccC
Confidence 445667899999998853 3334479999999999998 4789999998764
No 50
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.52 E-value=6.8e-09 Score=74.60 Aligned_cols=48 Identities=23% Similarity=0.605 Sum_probs=41.7
Q ss_pred cCCCCeeeeccccccCcCCcccccCCce-eccCcccccCCCCCCcccCCCc
Q 046177 51 SSVRELLECPVCLNAMYPPIHQCSNGHT-LCSGCKPRVHNRCPTCRHELGN 100 (272)
Q Consensus 51 ~~~~~~l~CpiC~~~l~~Pv~qC~cGH~-~C~~C~~~~~~~CP~Cr~~~~~ 100 (272)
+++.+.+.|+||++.+.+|++. +|||. ||..|+.++ ..||.||.++..
T Consensus 20 ~~~~~~~~C~IC~~~~~~~~~~-pCgH~~~C~~C~~~~-~~CP~Cr~~i~~ 68 (75)
T 2ecg_A 20 RRLQEEKLCKICMDRNIAIVFV-PCGHLVTCKQCAEAV-DKCPMCYTVITF 68 (75)
T ss_dssp HHHHHHHSCSSSCSSCCCBCCS-SSCCCCBCHHHHHHC-SBCTTTCCBCCC
T ss_pred HcCCCCCCCCcCCCCCCCEEEe-cCCCHHHHHHHhhCC-CCCccCCceecC
Confidence 4456678999999999999876 89999 999999886 799999998864
No 51
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=98.52 E-value=3.3e-08 Score=66.08 Aligned_cols=44 Identities=27% Similarity=0.588 Sum_probs=36.3
Q ss_pred CeeeeccccccCcC----CcccccCCceeccCccccc---CCCCCCcccCCC
Q 046177 55 ELLECPVCLNAMYP----PIHQCSNGHTLCSGCKPRV---HNRCPTCRHELG 99 (272)
Q Consensus 55 ~~l~CpiC~~~l~~----Pv~qC~cGH~~C~~C~~~~---~~~CP~Cr~~~~ 99 (272)
+...|+||++.+.+ ++ .-.|||.||..|+.+| ...||.||.++.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~-~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 54 (55)
T 2ecm_A 4 GSSGCPICLEDIHTSRVVAH-VLPCGHLLHRTCYEEMLKEGYRCPLCSGPSS 54 (55)
T ss_dssp CCCSCTTTCCCCCTTTSCEE-ECTTSCEEETTHHHHHHHHTCCCTTSCCSSC
T ss_pred CCCcCcccChhhcCCCcCeE-ecCCCCcccHHHHHHHHHcCCcCCCCCCcCC
Confidence 45789999999865 44 3379999999999998 478999998874
No 52
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.41 E-value=1.7e-07 Score=66.08 Aligned_cols=47 Identities=32% Similarity=0.649 Sum_probs=40.7
Q ss_pred CCCCeeeeccccccCcCCcccccCCce-eccCcccccCCCCCCcccCCCc
Q 046177 52 SVRELLECPVCLNAMYPPIHQCSNGHT-LCSGCKPRVHNRCPTCRHELGN 100 (272)
Q Consensus 52 ~~~~~l~CpiC~~~l~~Pv~qC~cGH~-~C~~C~~~~~~~CP~Cr~~~~~ 100 (272)
...+...|+||++...++++. +|||. +|..|.... ..||.||.++..
T Consensus 11 ~~~~~~~C~IC~~~~~~~v~~-pCgH~~~C~~C~~~~-~~CP~CR~~i~~ 58 (68)
T 2ea5_A 11 SEENSKDCVVCQNGTVNWVLL-PCRHTCLCDGCVKYF-QQCPMCRQFVQE 58 (68)
T ss_dssp SCCCSSCCSSSSSSCCCCEET-TTTBCCSCTTHHHHC-SSCTTTCCCCCC
T ss_pred cCCCCCCCCCcCcCCCCEEEE-CCCChhhhHHHHhcC-CCCCCCCcchhc
Confidence 344677899999999999877 89999 999999876 699999998864
No 53
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=98.39 E-value=7.7e-08 Score=71.59 Aligned_cols=47 Identities=21% Similarity=0.507 Sum_probs=38.6
Q ss_pred CCCCeeeeccccccCcC---CcccccCCceeccCccccc---CCCCCCcccCCC
Q 046177 52 SVRELLECPVCLNAMYP---PIHQCSNGHTLCSGCKPRV---HNRCPTCRHELG 99 (272)
Q Consensus 52 ~~~~~l~CpiC~~~l~~---Pv~qC~cGH~~C~~C~~~~---~~~CP~Cr~~~~ 99 (272)
...+...|+||++.+.. ++ ...|||.||..|+.+| ...||.||.++.
T Consensus 36 ~~~~~~~C~IC~~~~~~~~~~~-~l~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~ 88 (91)
T 2l0b_A 36 AVGQEMCCPICCSEYVKGDVAT-ELPCHHYFHKPCVSIWLQKSGTCPVCRCMFP 88 (91)
T ss_dssp SSSSCSEETTTTEECCTTCEEE-EETTTEEEEHHHHHHHHTTTCBCTTTCCBSS
T ss_pred ccCCCCCCcccChhhcCCCcEE-ecCCCChHHHHHHHHHHHcCCcCcCcCccCC
Confidence 34567899999998876 44 3479999999999998 478999999875
No 54
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.33 E-value=6.5e-08 Score=75.94 Aligned_cols=46 Identities=30% Similarity=0.839 Sum_probs=39.6
Q ss_pred CCeeeeccccccCcCC-------cccccCCceeccCccccc---CCCCCCcccCCCc
Q 046177 54 RELLECPVCLNAMYPP-------IHQCSNGHTLCSGCKPRV---HNRCPTCRHELGN 100 (272)
Q Consensus 54 ~~~l~CpiC~~~l~~P-------v~qC~cGH~~C~~C~~~~---~~~CP~Cr~~~~~ 100 (272)
.+.+.|+||++.+.+| +. ..|||+||..|+.+| ...||.||..+..
T Consensus 5 ~~~~~C~IC~~~~~~~~~~~~~~~~-~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 60 (133)
T 4ap4_A 5 SGTVSCPICMDGYSEIVQNGRLIVS-TECGHVFCSQCLRDSLKNANTCPTCRKKINH 60 (133)
T ss_dssp CCSCBCTTTCCBHHHHHHTTCCEEE-ETTCCEEEHHHHHHHHTTCSBCTTTCCBCTT
T ss_pred CCCCCCcccChhhhCccccccCeEe-cCCCChhhHHHHHHHHHhCCCCCCCCCcCcc
Confidence 4678999999999988 54 489999999999998 4689999998864
No 55
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=98.30 E-value=1e-07 Score=84.00 Aligned_cols=63 Identities=16% Similarity=0.268 Sum_probs=50.5
Q ss_pred cCCCCeeeeccccccCcCCcccccCCceeccCcccccC-----CCCCC--cccCCCc---ccchhHHHHhhhc
Q 046177 51 SSVRELLECPVCLNAMYPPIHQCSNGHTLCSGCKPRVH-----NRCPT--CRHELGN---IRCLALEKVAASL 113 (272)
Q Consensus 51 ~~~~~~l~CpiC~~~l~~Pv~qC~cGH~~C~~C~~~~~-----~~CP~--Cr~~~~~---~r~~~le~~~~~l 113 (272)
+.....+.||||+++|.+||..-.|||+||+.|+.++. ..||. |+..+.. .+|..|.+++...
T Consensus 176 ~~~~~el~CPIcl~~f~DPVts~~CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~~~dL~pN~~L~~lve~~ 248 (267)
T 3htk_C 176 EGGKIELTCPITCKPYEAPLISRKCNHVFDRDGIQNYLQGYTTRDCPQAACSQVVSMRDFVRDPIMELRCKIA 248 (267)
T ss_dssp CSSBCCSBCTTTSSBCSSEEEESSSCCEEEHHHHHHHSTTCSCEECSGGGCSCEECGGGEEECHHHHHHHHHH
T ss_pred cCCceeeECcCccCcccCCeeeCCCCCcccHHHHHHHHHhCCCCCCCcccccCcCchhhCCcCHHHHHHHHHH
Confidence 44578899999999999998533699999999999872 36999 9998754 5677887777654
No 56
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=98.29 E-value=5.3e-08 Score=70.80 Aligned_cols=47 Identities=28% Similarity=0.718 Sum_probs=41.0
Q ss_pred CCCCeeeeccccccCcCCcccccCCce-eccCcccccCCCCCCcccCCCc
Q 046177 52 SVRELLECPVCLNAMYPPIHQCSNGHT-LCSGCKPRVHNRCPTCRHELGN 100 (272)
Q Consensus 52 ~~~~~l~CpiC~~~l~~Pv~qC~cGH~-~C~~C~~~~~~~CP~Cr~~~~~ 100 (272)
.+.+...|+||++.+..|++. +|||. ||..|...+ ..||.||.++..
T Consensus 14 ~l~~~~~C~IC~~~~~~~v~~-pCgH~~~C~~C~~~~-~~CP~Cr~~i~~ 61 (79)
T 2yho_A 14 KLKEAMLCMVCCEEEINSTFC-PCGHTVCCESCAAQL-QSCPVCRSRVEH 61 (79)
T ss_dssp HHHHHTBCTTTSSSBCCEEEE-TTCBCCBCHHHHTTC-SBCTTTCCBCCE
T ss_pred cCCCCCEeEEeCcccCcEEEE-CCCCHHHHHHHHHhc-CcCCCCCchhhC
Confidence 345567899999999999877 89999 999999998 599999998864
No 57
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=98.21 E-value=3.6e-07 Score=70.40 Aligned_cols=45 Identities=18% Similarity=0.452 Sum_probs=36.2
Q ss_pred eeeeccccccCcCCcc-----------------cccCCceeccCcccccC--------CCCCCcccCCCc
Q 046177 56 LLECPVCLNAMYPPIH-----------------QCSNGHTLCSGCKPRVH--------NRCPTCRHELGN 100 (272)
Q Consensus 56 ~l~CpiC~~~l~~Pv~-----------------qC~cGH~~C~~C~~~~~--------~~CP~Cr~~~~~ 100 (272)
...|+||++.|..|.. .-.|||.||..|+.+|. ..||+||..+..
T Consensus 25 ~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~ 94 (114)
T 1v87_A 25 EEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGE 94 (114)
T ss_dssp SCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSS
T ss_pred CCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccCCCCCcCCCCCCccCC
Confidence 4589999999977631 33699999999999873 479999998754
No 58
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.13 E-value=6.3e-07 Score=65.16 Aligned_cols=45 Identities=22% Similarity=0.498 Sum_probs=36.4
Q ss_pred CeeeeccccccCcC--------------CcccccCCceeccCccccc---CCCCCCcccCCC
Q 046177 55 ELLECPVCLNAMYP--------------PIHQCSNGHTLCSGCKPRV---HNRCPTCRHELG 99 (272)
Q Consensus 55 ~~l~CpiC~~~l~~--------------Pv~qC~cGH~~C~~C~~~~---~~~CP~Cr~~~~ 99 (272)
+...|+||++.+.. ++....|||.|+..|+.+| ...||+||.++.
T Consensus 14 ~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~ 75 (81)
T 2ecl_A 14 ECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNNRCPLCQQDWV 75 (81)
T ss_dssp CCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTTCCBCTTTCCBCC
T ss_pred CCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHhCCCCCCcCCCcc
Confidence 45579999999976 3334359999999999998 368999999875
No 59
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=98.11 E-value=6.1e-07 Score=82.53 Aligned_cols=48 Identities=27% Similarity=0.743 Sum_probs=42.2
Q ss_pred cCCCCeeeeccccccCcCCcccccCCce-eccCcccccCCCCCCcccCCCc
Q 046177 51 SSVRELLECPVCLNAMYPPIHQCSNGHT-LCSGCKPRVHNRCPTCRHELGN 100 (272)
Q Consensus 51 ~~~~~~l~CpiC~~~l~~Pv~qC~cGH~-~C~~C~~~~~~~CP~Cr~~~~~ 100 (272)
+.+.+.+.|+||++.+..|++. +|||. ||..|+..+ ..||.||.++..
T Consensus 290 ~~l~~~~~C~IC~~~~~~~v~l-pCgH~~fC~~C~~~~-~~CP~CR~~i~~ 338 (345)
T 3t6p_A 290 RRLQEERTCKVCMDKEVSVVFI-PCGHLVVCQECAPSL-RKCPICRGIIKG 338 (345)
T ss_dssp HHHHTTCBCTTTSSSBCCEEEE-TTCCEEECTTTGGGC-SBCTTTCCBCCE
T ss_pred HhCcCCCCCCccCCcCCceEEc-CCCChhHhHHHHhcC-CcCCCCCCCccC
Confidence 3445678999999999999877 89999 999999998 799999998864
No 60
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=98.04 E-value=1.1e-06 Score=81.86 Aligned_cols=47 Identities=23% Similarity=0.549 Sum_probs=40.2
Q ss_pred CCCeeeeccccccCcCCcccccCCceeccCccccc----CCCCCCcccCCCc
Q 046177 53 VRELLECPVCLNAMYPPIHQCSNGHTLCSGCKPRV----HNRCPTCRHELGN 100 (272)
Q Consensus 53 ~~~~l~CpiC~~~l~~Pv~qC~cGH~~C~~C~~~~----~~~CP~Cr~~~~~ 100 (272)
......|+||.+.+..|+.. +|||.||..|+..| ...||.||.++..
T Consensus 329 ~~~~~~C~ICle~~~~pv~l-pCGH~FC~~Ci~~wl~~~~~~CP~CR~~i~~ 379 (389)
T 2y1n_A 329 GSTFQLCKICAENDKDVKIE-PCGHLMCTSCLTSWQESEGQGCPFCRCEIKG 379 (389)
T ss_dssp TTSSSBCTTTSSSBCCEEEE-TTCCEECHHHHHHHHHHTCSBCTTTCCBCCE
T ss_pred cCCCCCCCccCcCCCCeEEe-CCCChhhHHHHHHHHhcCCCCCCCCCCccCC
Confidence 34457999999999999865 89999999999887 3789999998864
No 61
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.01 E-value=1e-06 Score=68.94 Aligned_cols=48 Identities=29% Similarity=0.770 Sum_probs=40.2
Q ss_pred CCCeeeeccccccCcCCc------ccccCCceeccCccccc---CCCCCCcccCCCc
Q 046177 53 VRELLECPVCLNAMYPPI------HQCSNGHTLCSGCKPRV---HNRCPTCRHELGN 100 (272)
Q Consensus 53 ~~~~l~CpiC~~~l~~Pv------~qC~cGH~~C~~C~~~~---~~~CP~Cr~~~~~ 100 (272)
..+.+.|+||++.+..|. ....|||.||..|+.+| ...||.||.++..
T Consensus 69 ~~~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 125 (133)
T 4ap4_A 69 GSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINH 125 (133)
T ss_dssp SSSSCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred CCCCCCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHHcCCCCCCCCCcCCh
Confidence 356788999999998761 35589999999999998 4799999998864
No 62
>2yre_A F-box only protein 30; zinc binding, E3 ubiquitin ligase, SCF, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.98 E-value=2.4e-06 Score=64.30 Aligned_cols=54 Identities=17% Similarity=0.288 Sum_probs=48.8
Q ss_pred CCCcccccCCCCceeccCcHHhhhhcCCCccccCCCCCCCCccccChhHHHHHhhhc
Q 046177 114 ELPCKYQSYGCMGIYPYYSKLKHESQCIFRPYNCPYAGSECTVMGDIPYLVAHLKDD 170 (272)
Q Consensus 114 ~v~C~~~~~GC~~~~~~~~~~~He~~C~~~~~~CP~~~~~C~~~g~~~~l~~Hl~~~ 170 (272)
.+.||| .|...+...++.+|...|+...+.|++..+||.+.+.+.+|.+|++.-
T Consensus 37 ~i~CP~---~Cga~i~rckL~EH~~~CP~a~v~C~~~~yGCp~~~~R~~L~~He~~C 90 (100)
T 2yre_A 37 LIGCPL---VCGAVFHSCKADEHRLLCPFERVPCLNSDFGCPFTMARNKVAEHLEMC 90 (100)
T ss_dssp EEECTT---CCSCEEEHHHHHHHHHHCSSSEEECTTTTTTCCCEEESSTHHHHHHTC
T ss_pred eeeCCc---ccCCeeehhhHHHHHhhcccccccccccCcCCceeecHHHHHHHHhhC
Confidence 578986 698899999999999999999999999989999999999999999853
No 63
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=97.92 E-value=1.9e-06 Score=66.11 Aligned_cols=45 Identities=20% Similarity=0.375 Sum_probs=36.8
Q ss_pred CeeeeccccccCcCC-----------------cccccCCceeccCccccc---CCCCCCcccCCC
Q 046177 55 ELLECPVCLNAMYPP-----------------IHQCSNGHTLCSGCKPRV---HNRCPTCRHELG 99 (272)
Q Consensus 55 ~~l~CpiC~~~l~~P-----------------v~qC~cGH~~C~~C~~~~---~~~CP~Cr~~~~ 99 (272)
+.-.|+||++.+..+ +..-.|||.|+..|+.+| ...||+||.++.
T Consensus 36 ~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~Cr~~~~ 100 (106)
T 3dpl_R 36 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWE 100 (106)
T ss_dssp CSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTTCSBCSSSCSBCC
T ss_pred CCCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHHcCCcCcCCCCcce
Confidence 445799999999866 233469999999999998 478999999864
No 64
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=97.89 E-value=1.9e-06 Score=59.79 Aligned_cols=46 Identities=22% Similarity=0.563 Sum_probs=38.0
Q ss_pred CeeeeccccccCcCCccc-ccCCce-eccCcccccC---CCCCCcccCCCc
Q 046177 55 ELLECPVCLNAMYPPIHQ-CSNGHT-LCSGCKPRVH---NRCPTCRHELGN 100 (272)
Q Consensus 55 ~~l~CpiC~~~l~~Pv~q-C~cGH~-~C~~C~~~~~---~~CP~Cr~~~~~ 100 (272)
+...|+||++-..++++. -+|||. +|..|..++. ..||.||.++..
T Consensus 7 ~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~~ 57 (64)
T 2vje_A 7 AIEPCVICQGRPKNGCIVHGKTGHLMACFTCAKKLKKRNKPCPVCRQPIQM 57 (64)
T ss_dssp GGSCCTTTSSSCSCEEEEETTEEEEEECHHHHHHHHHTTCCCTTTCCCCCE
T ss_pred CcCCCCcCCCCCCCEEEECCCCCChhhHHHHHHHHHHcCCcCCCcCcchhc
Confidence 456899999999999753 279999 8999999873 579999998853
No 65
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=97.84 E-value=2.6e-06 Score=58.97 Aligned_cols=46 Identities=26% Similarity=0.573 Sum_probs=37.2
Q ss_pred CeeeeccccccCcCCcc-cccCCce-eccCcccccC---CCCCCcccCCCc
Q 046177 55 ELLECPVCLNAMYPPIH-QCSNGHT-LCSGCKPRVH---NRCPTCRHELGN 100 (272)
Q Consensus 55 ~~l~CpiC~~~l~~Pv~-qC~cGH~-~C~~C~~~~~---~~CP~Cr~~~~~ 100 (272)
....|+||++-..++++ .-+|||. +|..|..++. ..||.||.++..
T Consensus 6 ~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~~ 56 (63)
T 2vje_B 6 LLKPCSLCEKRPRDGNIIHGRTGHLVTCFHCARRLKKAGASCPICKKEIQL 56 (63)
T ss_dssp GGSBCTTTSSSBSCEEEEETTEEEEEECHHHHHHHHHTTCBCTTTCCBCCE
T ss_pred cCCCCcccCCcCCCeEEEecCCCCHhHHHHHHHHHHHhCCcCCCcCchhhc
Confidence 34579999999988853 2379998 9999998873 489999998853
No 66
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=97.78 E-value=3.3e-06 Score=62.91 Aligned_cols=43 Identities=19% Similarity=0.450 Sum_probs=34.1
Q ss_pred CeeeeccccccCcCCccc--ccCCceeccCccccc-----------CCCCCC--cccC
Q 046177 55 ELLECPVCLNAMYPPIHQ--CSNGHTLCSGCKPRV-----------HNRCPT--CRHE 97 (272)
Q Consensus 55 ~~l~CpiC~~~l~~Pv~q--C~cGH~~C~~C~~~~-----------~~~CP~--Cr~~ 97 (272)
+.+.|+||++.+..|... -.|||.||..|+... ...||. |+..
T Consensus 4 ~~~~C~IC~~~~~~~~~~~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~ 61 (94)
T 1wim_A 4 GSSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQ 61 (94)
T ss_dssp SBCCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSC
T ss_pred CCcCCcccCcccccccceEcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCC
Confidence 567899999999888532 259999999998764 136998 8887
No 67
>2yuc_A TNF receptor-associated factor 4; ZF-TRAF, cysteine-rich domain associated with ring and TRAF domains protein 1, malignant 62; NMR {Homo sapiens}
Probab=97.74 E-value=1.5e-05 Score=56.84 Aligned_cols=50 Identities=18% Similarity=0.231 Sum_probs=44.9
Q ss_pred cCCCcccccCCCCceeccCcHHhhhh-cCCCccccCCCCCCCCccccChhHHHHHhhh
Q 046177 113 LELPCKYQSYGCMGIYPYYSKLKHES-QCIFRPYNCPYAGSECTVMGDIPYLVAHLKD 169 (272)
Q Consensus 113 l~v~C~~~~~GC~~~~~~~~~~~He~-~C~~~~~~CP~~~~~C~~~g~~~~l~~Hl~~ 169 (272)
..+.|++ ||...+...++.+|+. .|+++++.|++ |++...+.+|..|...
T Consensus 15 ~~v~C~~---~C~~~v~r~~l~~H~~~~C~~r~v~C~~----C~~~~~~~~l~~H~~~ 65 (76)
T 2yuc_A 15 NVIPCPN---RCPMKLSRRDLPAHLQHDCPKRRLKCEF----CGCDFSGEAYESHEGM 65 (76)
T ss_dssp SCCBCTT---CCSCBCCSSSSTTTTTTSCTTSCCCCSS----SCCCCCHHHHHHTTTS
T ss_pred cccCCCc---cccHHhhHhHHHhhCHhhCCCcceECCC----CCCccCHHHHHHHHhH
Confidence 4678876 7999999999999998 99999999998 9999999999999843
No 68
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=97.68 E-value=8.4e-06 Score=56.14 Aligned_cols=45 Identities=9% Similarity=0.082 Sum_probs=38.1
Q ss_pred eeeeccccccCcCCcccccCCceeccCccccc---CCCCCCcccCCCc
Q 046177 56 LLECPVCLNAMYPPIHQCSNGHTLCSGCKPRV---HNRCPTCRHELGN 100 (272)
Q Consensus 56 ~l~CpiC~~~l~~Pv~qC~cGH~~C~~C~~~~---~~~CP~Cr~~~~~ 100 (272)
.|.|||+.++|.+|+..-.+||+|++.|+.+| ...||..+.++..
T Consensus 3 ~~~CpIs~~~m~dPV~~~~sG~~yer~~I~~~l~~~~~cP~t~~~L~~ 50 (61)
T 2bay_A 3 HMLCAISGKVPRRPVLSPKSRTIFEKSLLEQYVKDTGNDPITNEPLSI 50 (61)
T ss_dssp -CCCTTTCSCCSSEEEETTTTEEEEHHHHHHHHHHHSBCTTTCCBCCG
T ss_pred eEEecCCCCCCCCCEEeCCCCcEEcHHHHHHHHHhCCCCcCCcCCCCh
Confidence 47899999999999854269999999999998 3679999998863
No 69
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=97.60 E-value=8.9e-06 Score=63.42 Aligned_cols=44 Identities=20% Similarity=0.397 Sum_probs=0.4
Q ss_pred eeeeccccccCcCC-----------------cccccCCceeccCccccc---CCCCCCcccCCC
Q 046177 56 LLECPVCLNAMYPP-----------------IHQCSNGHTLCSGCKPRV---HNRCPTCRHELG 99 (272)
Q Consensus 56 ~l~CpiC~~~l~~P-----------------v~qC~cGH~~C~~C~~~~---~~~CP~Cr~~~~ 99 (272)
.-.|+||++.+..| +....|||.|+..|+.+| ...||+||.++.
T Consensus 48 ~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~~~~CP~Cr~~~~ 111 (117)
T 4a0k_B 48 VDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWE 111 (117)
T ss_dssp C---------------------------------------------------------------
T ss_pred CCcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHcCCcCCCCCCeee
Confidence 35799999999764 222369999999999998 478999999864
No 70
>2yre_A F-box only protein 30; zinc binding, E3 ubiquitin ligase, SCF, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.50 E-value=2.2e-05 Score=59.04 Aligned_cols=57 Identities=21% Similarity=0.372 Sum_probs=43.1
Q ss_pred CCC-CcccCCCcccchhHH--HHhhhcCCCcccccCCCCceeccCcHHhhhhcCCCccccCC
Q 046177 90 RCP-TCRHELGNIRCLALE--KVAASLELPCKYQSYGCMGIYPYYSKLKHESQCIFRPYNCP 148 (272)
Q Consensus 90 ~CP-~Cr~~~~~~r~~~le--~~~~~l~v~C~~~~~GC~~~~~~~~~~~He~~C~~~~~~CP 148 (272)
.|| .|...+ .|...-+ .+.-...++|+|+.+||+..+...++.+|++.|+-..+.|.
T Consensus 39 ~CP~~Cga~i--~rckL~EH~~~CP~a~v~C~~~~yGCp~~~~R~~L~~He~~CPas~v~~~ 98 (100)
T 2yre_A 39 GCPLVCGAVF--HSCKADEHRLLCPFERVPCLNSDFGCPFTMARNKVAEHLEMCPASVSGPS 98 (100)
T ss_dssp ECTTCCSCEE--EHHHHHHHHHHCSSSEEECTTTTTTCCCEEESSTHHHHHHTCGGGCCCCC
T ss_pred eCCcccCCee--ehhhHHHHHhhcccccccccccCcCCceeecHHHHHHHHhhCCceeEecC
Confidence 588 676633 2322222 23456679999999999999999999999999998888775
No 71
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=97.22 E-value=0.00013 Score=54.75 Aligned_cols=80 Identities=19% Similarity=0.310 Sum_probs=53.6
Q ss_pred eeccccccCcCCcccccCCceeccCccccc----CCCCCCcccCCCcccchhHHHHhhhcCCCcccccCCCCceeccCcH
Q 046177 58 ECPVCLNAMYPPIHQCSNGHTLCSGCKPRV----HNRCPTCRHELGNIRCLALEKVAASLELPCKYQSYGCMGIYPYYSK 133 (272)
Q Consensus 58 ~CpiC~~~l~~Pv~qC~cGH~~C~~C~~~~----~~~CP~Cr~~~~~~r~~~le~~~~~l~v~C~~~~~GC~~~~~~~~~ 133 (272)
-|++|..++..=...=+|.|.||.+|...+ .+.||.|+.++.......+ .-
T Consensus 3 fC~~C~~Pi~iygRmIPCkHvFCydCa~~~~~~~~k~Cp~C~~~V~rVe~~~~-----~~-------------------- 57 (101)
T 3vk6_A 3 FCDKCGLPIKVYGRMIPCKHVFCYDCAILHEKKGDKMCPGCSDPVQRIEQCTR-----GS-------------------- 57 (101)
T ss_dssp BCTTTCSBCSEEEEEETTCCEEEHHHHHHHHHTTCCBCTTTCCBCSEEEEEEG-----GG--------------------
T ss_pred ecCccCCCeEEEeeeccccccHHHHHHHHHHhccCCCCcCcCCeeeeeEEecc-----CC--------------------
Confidence 488999888654323379999999999765 3689999999865322111 11
Q ss_pred HhhhhcCCCccccCCCCCCCCcccc-ChhHHHHHhhhcCCC
Q 046177 134 LKHESQCIFRPYNCPYAGSECTVMG-DIPYLVAHLKDDHKV 173 (272)
Q Consensus 134 ~~He~~C~~~~~~CP~~~~~C~~~g-~~~~l~~Hl~~~H~~ 173 (272)
.+-|+.. .+|.-.. +..+|..|....|..
T Consensus 58 ----------if~C~~~-~~CkrtyLs~rdlqaHI~~~H~~ 87 (101)
T 3vk6_A 58 ----------LFMCSIV-QGCKRTYLSQRDLQAHINHRHMR 87 (101)
T ss_dssp ----------CCCCCCC-CCCCCCCSSHHHHHHHHHHHTTT
T ss_pred ----------EEECCCC-CCHHHHhcCHHHHHHHHHHHhhh
Confidence 2234411 1466544 678999999999974
No 72
>2d9k_A FLN29 gene product; zinc finger, ZF-TRAF, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.77 E-value=0.00021 Score=50.69 Aligned_cols=50 Identities=20% Similarity=0.154 Sum_probs=43.2
Q ss_pred CCCcccccCCCCceeccCcHHhhhhcCCCccccCCCCCCCCccccChhHHHHHhhhcC
Q 046177 114 ELPCKYQSYGCMGIYPYYSKLKHESQCIFRPYNCPYAGSECTVMGDIPYLVAHLKDDH 171 (272)
Q Consensus 114 ~v~C~~~~~GC~~~~~~~~~~~He~~C~~~~~~CP~~~~~C~~~g~~~~l~~Hl~~~H 171 (272)
++.|++ |...+...++..|+..|+.+++.|+. |+....+.+|..|+....
T Consensus 17 ~~~C~~----C~~~~~~~~L~~H~~~c~~~~~~C~~----C~~~~~~~~l~~H~~~c~ 66 (75)
T 2d9k_A 17 LAVCQH----CDLELSILKLKEHEDYCGARTELCGN----CGRNVLVKDLKTHPEVCG 66 (75)
T ss_dssp CEECSS----SCCEECHHHHHHHHHHHHHCEEECSS----SCCEEETTGGGTHHHHBT
T ss_pred ccCCcc----cChHhhHHHHHHHHhHcCCCceEccc----CCCcCcHHHHHHHHHHcc
Confidence 466765 89999999999999999999999997 888888899999987643
No 73
>2yuc_A TNF receptor-associated factor 4; ZF-TRAF, cysteine-rich domain associated with ring and TRAF domains protein 1, malignant 62; NMR {Homo sapiens}
Probab=96.73 E-value=0.00095 Score=47.25 Aligned_cols=37 Identities=16% Similarity=0.224 Sum_probs=32.3
Q ss_pred HhhhcCCCcccccCCCCceeccCcHHhhhhcCCCccccCCC
Q 046177 109 VAASLELPCKYQSYGCMGIYPYYSKLKHESQCIFRPYNCPY 149 (272)
Q Consensus 109 ~~~~l~v~C~~~~~GC~~~~~~~~~~~He~~C~~~~~~CP~ 149 (272)
......+.|++ |.+.+...++..|+++|+..++.||.
T Consensus 39 ~C~~r~v~C~~----C~~~~~~~~l~~H~~~Cp~~~v~C~~ 75 (76)
T 2yuc_A 39 DCPKRRLKCEF----CGCDFSGEAYESHEGMCPQESSGPSS 75 (76)
T ss_dssp SCTTSCCCCSS----SCCCCCHHHHHHTTTSCTTSSCCCSC
T ss_pred hCCCcceECCC----CCCccCHHHHHHHHhHCCCCccCCCC
Confidence 34455688887 99999999999999999999999996
No 74
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=96.67 E-value=0.001 Score=54.48 Aligned_cols=50 Identities=16% Similarity=0.281 Sum_probs=44.1
Q ss_pred hcCCCcccccCCCCceeccCcHHhhh-hcCCCccccCCCCCCCCccccChhHHHHHhhh
Q 046177 112 SLELPCKYQSYGCMGIYPYYSKLKHE-SQCIFRPYNCPYAGSECTVMGDIPYLVAHLKD 169 (272)
Q Consensus 112 ~l~v~C~~~~~GC~~~~~~~~~~~He-~~C~~~~~~CP~~~~~C~~~g~~~~l~~Hl~~ 169 (272)
-..++|+ ||++.+...++..|+ ..|+++++.||+ |+......+|..|.+.
T Consensus 108 ~~~v~C~----~C~~~~~r~~l~~H~~~~C~~r~~~C~~----C~~~~~~~~l~~H~~~ 158 (170)
T 3hcs_A 108 FALMDCP----QCQRPFQKFHINIHILKDCPRRQVSCDN----CAASMAFEDKEIHDQN 158 (170)
T ss_dssp TSEEECT----TTCCEEEGGGHHHHHHHTCTTCEEECTT----TCCEEEGGGHHHHHTT
T ss_pred ceeeECC----CCChHHHHHHHHHHhhhhCCCCCeECCC----CCCccCHHHHHhHHHh
Confidence 3446676 799999999999999 599999999997 9999999999999864
No 75
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.66 E-value=0.001 Score=48.01 Aligned_cols=47 Identities=19% Similarity=0.361 Sum_probs=34.7
Q ss_pred CCCeeeeccccccC--cCCccc-ccC---CceeccCcccccC-----CCCCCcccCCC
Q 046177 53 VRELLECPVCLNAM--YPPIHQ-CSN---GHTLCSGCKPRVH-----NRCPTCRHELG 99 (272)
Q Consensus 53 ~~~~l~CpiC~~~l--~~Pv~q-C~c---GH~~C~~C~~~~~-----~~CP~Cr~~~~ 99 (272)
..+...|.||++-+ ..++.. |.| +|.|-..|+.+|. ..||+||..+.
T Consensus 12 ~~~~~~C~IC~~~~~~~~~l~~pC~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~ 69 (80)
T 2d8s_A 12 PSSQDICRICHCEGDDESPLITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFI 69 (80)
T ss_dssp CTTSCCCSSSCCCCCSSSCEECSSSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCC
T ss_pred CCCCCCCeEcCccccCCCeeEeccccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeee
Confidence 34556899999766 345433 333 3999999999992 48999999875
No 76
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=96.26 E-value=0.0011 Score=60.45 Aligned_cols=46 Identities=24% Similarity=0.587 Sum_probs=38.6
Q ss_pred CCeeeeccccccCcC----Cccccc---CCceeccCcccccC--------------CCCCCcccCCC
Q 046177 54 RELLECPVCLNAMYP----PIHQCS---NGHTLCSGCKPRVH--------------NRCPTCRHELG 99 (272)
Q Consensus 54 ~~~l~CpiC~~~l~~----Pv~qC~---cGH~~C~~C~~~~~--------------~~CP~Cr~~~~ 99 (272)
...-+|+||+..+.+ |...|. |||.|=..|+.+|- +.||.||.+++
T Consensus 306 e~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs 372 (381)
T 3k1l_B 306 NEELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLS 372 (381)
T ss_dssp CSCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEE
T ss_pred cCCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCC
Confidence 466789999999876 766774 99999999999981 46999999875
No 77
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=95.87 E-value=0.0063 Score=43.27 Aligned_cols=45 Identities=20% Similarity=0.573 Sum_probs=36.4
Q ss_pred CCeeeeccccccCcCCcccc-cCCceeccCccccc---C--CCCCCcccCCC
Q 046177 54 RELLECPVCLNAMYPPIHQC-SNGHTLCSGCKPRV---H--NRCPTCRHELG 99 (272)
Q Consensus 54 ~~~l~CpiC~~~l~~Pv~qC-~cGH~~C~~C~~~~---~--~~CP~Cr~~~~ 99 (272)
...-.|.||++++.+- ..| .|+|.|=..|+.+| . .+||.|+.++.
T Consensus 13 ~~i~~C~IC~~~i~~g-~~C~~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~ 63 (74)
T 2ct0_A 13 DAVKICNICHSLLIQG-QSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWP 63 (74)
T ss_dssp SSSCBCSSSCCBCSSS-EECSSSCCEECHHHHHHHSTTCSSCCCTTTCSCCC
T ss_pred CCCCcCcchhhHcccC-CccCCCCchhhHHHHHHHHHhcCCCCCCCCcCcCC
Confidence 3456799999999854 467 59999999999988 2 68999999875
No 78
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=94.06 E-value=0.013 Score=43.53 Aligned_cols=32 Identities=19% Similarity=0.502 Sum_probs=27.0
Q ss_pred Ceeeeccccc-cCcCCccccc-CCceeccCcccc
Q 046177 55 ELLECPVCLN-AMYPPIHQCS-NGHTLCSGCKPR 86 (272)
Q Consensus 55 ~~l~CpiC~~-~l~~Pv~qC~-cGH~~C~~C~~~ 86 (272)
+.+.|++|.+ +..+|+..|. |+|.||..|+..
T Consensus 2 ee~~C~~C~~~~~~~av~~C~~C~~~~C~~Cl~~ 35 (101)
T 2jun_A 2 EKVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKA 35 (101)
T ss_dssp CCCBCTTCCSSSCCBCCEEETTTTEEECHHHHHH
T ss_pred CCCCCcCCCCCCCCCceEECCcCChHHhHHHCHH
Confidence 4578999996 5788887665 999999999987
No 79
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=93.38 E-value=0.023 Score=43.46 Aligned_cols=60 Identities=13% Similarity=0.074 Sum_probs=40.2
Q ss_pred hHHHHhhhcCCCcccccCCCCceeccCcH------HhhhhcCCCccccCCCCCCCCccccChhHHHHHhhhcCCC
Q 046177 105 ALEKVAASLELPCKYQSYGCMGIYPYYSK------LKHESQCIFRPYNCPYAGSECTVMGDIPYLVAHLKDDHKV 173 (272)
Q Consensus 105 ~le~~~~~l~v~C~~~~~GC~~~~~~~~~------~~He~~C~~~~~~CP~~~~~C~~~g~~~~l~~Hl~~~H~~ 173 (272)
-+.+.+..-...||. |...+...++ ..-. .-..+.||+. +|+|.+...+|..|+++.+..
T Consensus 44 Ci~~~~~~~~~~CP~----Cr~~~~~~~~~~~~~l~~~i---~~l~v~C~n~--gC~~~~~~~~l~~H~~~c~~~ 109 (118)
T 3hct_A 44 CIIKSIRDAGHKCPV----DNEILLENQLFPDNFAKREI---LSLMVKCPNE--GCLHKMELRHLEDHQAHCEFA 109 (118)
T ss_dssp HHHHHHHHHCSBCTT----TCCBCCGGGCEECHHHHHHH---HTSEEECSST--TCCCEEEGGGSGGGTSSSCC-
T ss_pred HHHHHHhhCCCCCCC----CCCCcCHHhcccCHHHHHHH---ccceeECCCC--CCCCEEeeHHHHHHHHHchhh
Confidence 355555555558886 7666655432 1222 2367889975 599999999999999887764
No 80
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=92.70 E-value=0.088 Score=39.82 Aligned_cols=76 Identities=13% Similarity=0.178 Sum_probs=47.8
Q ss_pred CCCCCcccCCCc---cc------chhHHHHhhhcCCCcccccCCCCceeccCcHH----hhhhcCCCccccCCCCCCCCc
Q 046177 89 NRCPTCRHELGN---IR------CLALEKVAASLELPCKYQSYGCMGIYPYYSKL----KHESQCIFRPYNCPYAGSECT 155 (272)
Q Consensus 89 ~~CP~Cr~~~~~---~r------~~~le~~~~~l~v~C~~~~~GC~~~~~~~~~~----~He~~C~~~~~~CP~~~~~C~ 155 (272)
..||+|...+.. .+ ..-+.+.+......||. |...+...++. .-.+.=....+.||+. ||+
T Consensus 24 ~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~----Cr~~~~~~~~~~~~~~l~~~i~~l~v~C~~~--gC~ 97 (116)
T 1rmd_A 24 ISCQICEHILADPVETSCKHLFCRICILRCLKVMGSYCPS----CRYPCFPTDLESPVKSFLNILNSLMVKCPAQ--DCN 97 (116)
T ss_dssp TBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHTCSBCTT----TCCBCCGGGCBCCCHHHHHHHHHCEEECCST--TCC
T ss_pred CCCCCCCcHhcCcEEcCCCCcccHHHHHHHHhHCcCcCCC----CCCCCCHhhccccHHHHHHHHHHhcCCCCCC--CCc
Confidence 468888776543 11 13455666554667886 77766554422 1111223346789986 599
Q ss_pred cccChhHHHHHhhhc
Q 046177 156 VMGDIPYLVAHLKDD 170 (272)
Q Consensus 156 ~~g~~~~l~~Hl~~~ 170 (272)
|.+...++..|+...
T Consensus 98 ~~~~~~~~~~H~~~C 112 (116)
T 1rmd_A 98 EEVSLEKYNHHVSSH 112 (116)
T ss_dssp CEEEHHHHHHHHHTS
T ss_pred chhhHhHHHHHHHHh
Confidence 999999999999753
No 81
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=91.89 E-value=0.39 Score=34.38 Aligned_cols=73 Identities=22% Similarity=0.390 Sum_probs=49.5
Q ss_pred CCCeeeeccccccCcCC-ccccc--CCceeccCcccccCCCCCCcccCCCcccchhHHHHhhhcCCCcccccCCCCceec
Q 046177 53 VRELLECPVCLNAMYPP-IHQCS--NGHTLCSGCKPRVHNRCPTCRHELGNIRCLALEKVAASLELPCKYQSYGCMGIYP 129 (272)
Q Consensus 53 ~~~~l~CpiC~~~l~~P-v~qC~--cGH~~C~~C~~~~~~~CP~Cr~~~~~~r~~~le~~~~~l~v~C~~~~~GC~~~~~ 129 (272)
....|.|.+|.+-|.+- .+||+ -+|.||..|-... +++.-....|+||--
T Consensus 12 ~~a~l~CtlC~erLEdtHFVQCPsv~~HkFCFpCsr~s------------------Ik~q~~~~EvyCPSG--------- 64 (93)
T 2cs3_A 12 NSGPLCCTICHERLEDTHFVQCPSVPSHKFCFPCSRES------------------IKAQGATGEVYCPSG--------- 64 (93)
T ss_dssp SCCSCCCSSSCSCCSSTTSEECSSCSSCEECHHHHHHH------------------HHHHHSSSCCCCTTS---------
T ss_pred CCCeeEeecchhhhccCceeeCCCccCCeeeccccHHH------------------HHhcCCCCcEECCCC---------
Confidence 46778999999999877 56887 6899999995432 233344566777641
Q ss_pred cCcHHhhhhcCCCccccCCCCCCCCccccChhHHHHHh
Q 046177 130 YYSKLKHESQCIFRPYNCPYAGSECTVMGDIPYLVAHL 167 (272)
Q Consensus 130 ~~~~~~He~~C~~~~~~CP~~~~~C~~~g~~~~l~~Hl 167 (272)
.+||..|+.=.|...+.++..=|
T Consensus 65 ---------------~kCpL~gS~~PWAFmqgEIatIL 87 (93)
T 2cs3_A 65 ---------------EKCPLVGSNVPWAFMQGEIATIL 87 (93)
T ss_dssp ---------------SCCBCSSSSSBCCCCHHHHHHHH
T ss_pred ---------------CccccCCCcCchHHHhhHHHHHh
Confidence 26677666666766666655433
No 82
>2eod_A TNF receptor-associated factor 4; zinc binding, NF-KB, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=91.28 E-value=0.13 Score=34.27 Aligned_cols=48 Identities=35% Similarity=0.666 Sum_probs=35.6
Q ss_pred CCcccccCCCCceeccCcHHhhhhcCCCccccCC-CCCCCCcccc-ChhHHHHHhhhc
Q 046177 115 LPCKYQSYGCMGIYPYYSKLKHESQCIFRPYNCP-YAGSECTVMG-DIPYLVAHLKDD 170 (272)
Q Consensus 115 v~C~~~~~GC~~~~~~~~~~~He~~C~~~~~~CP-~~~~~C~~~g-~~~~l~~Hl~~~ 170 (272)
+.|.. |...+....+..|+..+.-+|+.|+ . |+... .+..|..|++..
T Consensus 11 ~~C~~----C~k~f~~~~L~~H~~~~~~~p~~C~~~----C~k~f~~~~~L~~H~~~h 60 (66)
T 2eod_A 11 QPCTY----CTKEFVFDTIQSHQYQCPRLPVACPNQ----CGVGTVAREDLPGHLKDS 60 (66)
T ss_dssp EECSS----SCCEEEHHHHHHHHHHCSSSEEECTTC----CSCCEEETTTHHHHHHTT
T ss_pred eeccc----cCCccCHHHHHHHHHHcCCcCccCCcc----cCcccccHHHHHHHHHhh
Confidence 45554 7777776678899888888899998 5 77654 456899998653
No 83
>2d9k_A FLN29 gene product; zinc finger, ZF-TRAF, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=90.80 E-value=0.083 Score=36.86 Aligned_cols=33 Identities=27% Similarity=0.379 Sum_probs=29.6
Q ss_pred CcHHhhhh-cCCCccccCCCCCCCCccccChhHHHHHh
Q 046177 131 YSKLKHES-QCIFRPYNCPYAGSECTVMGDIPYLVAHL 167 (272)
Q Consensus 131 ~~~~~He~-~C~~~~~~CP~~~~~C~~~g~~~~l~~Hl 167 (272)
.+|..|+. .|+++++.|++ |+......+|..|.
T Consensus 3 ~~L~~H~~~~c~~r~~~C~~----C~~~~~~~~L~~H~ 36 (75)
T 2d9k_A 3 SGSSGHEETECPLRLAVCQH----CDLELSILKLKEHE 36 (75)
T ss_dssp CCCSCCCCCCCCCCCEECSS----SCCEECHHHHHHHH
T ss_pred hHHHhhCcccCCCcccCCcc----cChHhhHHHHHHHH
Confidence 46778986 89999999997 99999999999998
No 84
>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Probab=89.66 E-value=0.26 Score=34.75 Aligned_cols=52 Identities=21% Similarity=0.212 Sum_probs=35.8
Q ss_pred CCCcccccCCCCceecc-CcHHhhhhcCCC---ccccCCCCCCCCcccc-ChhHHHHHhhhcCCC
Q 046177 114 ELPCKYQSYGCMGIYPY-YSKLKHESQCIF---RPYNCPYAGSECTVMG-DIPYLVAHLKDDHKV 173 (272)
Q Consensus 114 ~v~C~~~~~GC~~~~~~-~~~~~He~~C~~---~~~~CP~~~~~C~~~g-~~~~l~~Hl~~~H~~ 173 (272)
.+.|+. |...+.. ..+..|+..-.- .++.|+. |+... ....|..|++..|..
T Consensus 35 ~~~C~~----C~~~f~~~~~l~~H~~~h~~~~~~~~~C~~----C~~~f~~~~~L~~H~~~~H~~ 91 (95)
T 2yt9_A 35 PYSCPV----CGLRFKRKDRMSYHVRSHDGSVGKPYICQS----CGKGFSRPDHLNGHIKQVHSG 91 (95)
T ss_dssp SEECSS----SCCEESCHHHHHHHHHHHCCCCCSSBCCSS----SCCCBSSHHHHHHHHHHTSCC
T ss_pred CCcCCC----CCCccCCHHHHHHHHHHhcCCCCCceECCC----ccchhCCHHHHHHHHHHhcCC
Confidence 355664 7766654 356678764332 6889987 77766 567899999988863
No 85
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=88.70 E-value=0.19 Score=33.82 Aligned_cols=46 Identities=13% Similarity=0.361 Sum_probs=31.3
Q ss_pred CCeeeeccccccCcCCc-ccccCCc---eeccCccccc-----CCCCCCcccCCC
Q 046177 54 RELLECPVCLNAMYPPI-HQCSNGH---TLCSGCKPRV-----HNRCPTCRHELG 99 (272)
Q Consensus 54 ~~~l~CpiC~~~l~~Pv-~qC~cGH---~~C~~C~~~~-----~~~CP~Cr~~~~ 99 (272)
.+.-.|.||++-..+|+ .-|.|.+ .|=..|+.+| ...||+|+.++.
T Consensus 4 ~~~~~CrIC~~~~~~~l~~PC~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~ 58 (60)
T 1vyx_A 4 EDVPVCWICNEELGNERFRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYN 58 (60)
T ss_dssp CSCCEETTTTEECSCCCCCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred CCCCEeEEeecCCCCceecCcCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeee
Confidence 34568999998766553 3355544 4545688888 367999998764
No 86
>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid binding, KIAA1227 protein, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Probab=88.44 E-value=0.45 Score=34.56 Aligned_cols=52 Identities=23% Similarity=0.361 Sum_probs=35.1
Q ss_pred CCCcccccCCCCceecc-CcHHhhhhcCCCccccCCCCCCCCcccc-ChhHHHHHhhhcCCC
Q 046177 114 ELPCKYQSYGCMGIYPY-YSKLKHESQCIFRPYNCPYAGSECTVMG-DIPYLVAHLKDDHKV 173 (272)
Q Consensus 114 ~v~C~~~~~GC~~~~~~-~~~~~He~~C~~~~~~CP~~~~~C~~~g-~~~~l~~Hl~~~H~~ 173 (272)
.+.|+. |...+.. ..|..|+..-.-.++.|+. |+... ....|..|++..|..
T Consensus 42 ~~~C~~----C~~~f~~~~~l~~H~~H~~~~~~~C~~----C~~~f~~~~~L~~H~~~~H~~ 95 (107)
T 1wjp_A 42 AAVCPY----CSLRFFSPELKQEHESKCEYKKLTCLE----CMRTFKSSFSIWRHQVEVHNQ 95 (107)
T ss_dssp SBCCTT----TCCCBSSHHHHHHHHHHCSTGGGEEGG----GTEECSSHHHHHHHHHHTSCC
T ss_pred CccCCC----CCCccCCHHHHHHHHHcCCCCCccCcc----ccchhCCHHHHHHHHHHHcCC
Confidence 456654 6655543 3456777544557889986 77766 457899999877864
No 87
>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the cerebellum 3, disease mutation, DNA-binding, metal-binding, nucleus, polymorphism; NMR {Homo sapiens}
Probab=88.26 E-value=1.3 Score=34.18 Aligned_cols=121 Identities=13% Similarity=0.194 Sum_probs=70.1
Q ss_pred cCCCcccccCCCCeeeeccccccCcCCcccccCCcee----------ccCcccccCCCCCCcccCCCcccch--hHHHHh
Q 046177 43 LKPNLTVSSSVRELLECPVCLNAMYPPIHQCSNGHTL----------CSGCKPRVHNRCPTCRHELGNIRCL--ALEKVA 110 (272)
Q Consensus 43 ~~~~~~~~~~~~~~l~CpiC~~~l~~Pv~qC~cGH~~----------C~~C~~~~~~~CP~Cr~~~~~~r~~--~le~~~ 110 (272)
........++....+.|++|...+...... -.|.. ...| . ...|+.|...+.....+ -+..-.
T Consensus 12 ~~~~c~~~~~~~~~~~C~~C~~~f~~~~~L--~~H~~~~H~~~~~~~~~~~--~-~~~C~~C~~~f~~~~~l~~H~~~h~ 86 (155)
T 2rpc_A 12 QELSCKWIDEAQLSRPKKSCDRTFSTMHEL--VTHVTMEHVGGPEQNNHVC--Y-WEECPREGKSFKAKYKLVNHIRVHT 86 (155)
T ss_dssp CCBCCCBCCTTCCSSSCCCCCCCBSSHHHH--HHHHHTTTSCCTTCSSCCC--C-BTTCTTSSCCCSSHHHHHHHTHHHH
T ss_pred CCeeEEeechhhcccccccCCcccCCHHHH--HHHHHhhcCCCcccCCccc--c-ccCCCCcccccCCHHHHHHHHHhcC
Confidence 333344445556778899999988765211 11211 0111 0 13699998877643221 122223
Q ss_pred hhcCCCcccccCCCCceecc-CcHHhhhhcC-CCccccCCCCCCCCcccc-ChhHHHHHhhhcCC
Q 046177 111 ASLELPCKYQSYGCMGIYPY-YSKLKHESQC-IFRPYNCPYAGSECTVMG-DIPYLVAHLKDDHK 172 (272)
Q Consensus 111 ~~l~v~C~~~~~GC~~~~~~-~~~~~He~~C-~~~~~~CP~~~~~C~~~g-~~~~l~~Hl~~~H~ 172 (272)
..-.+.|+. .+|...+.. ..|..|+..- .-.++.|+.. +|+... ....|..|++..+.
T Consensus 87 ~~~~~~C~~--~~C~~~f~~~~~L~~H~~~h~~~~~~~C~~~--~C~k~f~~~~~L~~H~~~H~~ 147 (155)
T 2rpc_A 87 GEKPFPCPF--PGCGKIFARSENLKIHKRTHTGEKPFKCEFE--GCDRRFANSSDRKKHMHVHTS 147 (155)
T ss_dssp CCCSEECSC--TTTCCEESCHHHHHHHHTTTCSSCSBCCSST--TCCCCBSSHHHHHHSSTTTTS
T ss_pred CCCcccCCc--CCCCCccCCHHHHHHHHHhhCCCCCccCCCC--CCCCccCCHHHHHHHHHHhcC
Confidence 344567764 368887765 4677898743 3467899863 377766 45688999875444
No 88
>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Probab=88.25 E-value=0.62 Score=34.30 Aligned_cols=107 Identities=18% Similarity=0.260 Sum_probs=64.2
Q ss_pred CeeeeccccccCcCCcccccCCceeccCcccccCCCCCCcccCCCcccchhHHHH-----hhhcCCCcccccCCCCceec
Q 046177 55 ELLECPVCLNAMYPPIHQCSNGHTLCSGCKPRVHNRCPTCRHELGNIRCLALEKV-----AASLELPCKYQSYGCMGIYP 129 (272)
Q Consensus 55 ~~l~CpiC~~~l~~Pv~qC~cGH~~C~~C~~~~~~~CP~Cr~~~~~~r~~~le~~-----~~~l~v~C~~~~~GC~~~~~ 129 (272)
..+.|++|...+...... -.|.- .-...-...|+.|...+....++..-.. .....+.|+. |...+.
T Consensus 6 ~~~~C~~C~~~f~~~~~l--~~H~~--~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~C~~----C~~~f~ 77 (124)
T 2dlq_A 6 SGVECPTCHKKFLSKYYL--KVHNR--KHTGEKPFECPKCGKCYFRKENLLEHEARNCMNRSEQVFTCSV----CQETFR 77 (124)
T ss_dssp SSCCCTTTCCCCSSHHHH--HHHHH--HHSSCCSCBCTTTCCBCSSHHHHHHHHHHCCCCSCCCCEECSS----SCCEES
T ss_pred CCCCCCCCCCcCCCHHHH--HHHHH--hCCCCCCeECCCCCchhcCHHHHHHHHhhhhcCCCCCCeECCC----CCCccC
Confidence 457899998887665211 11221 0000112579999887754322211111 1233467775 888776
Q ss_pred cC-cHHhhhhc-CCCccccCCCCCCCCcccc-ChhHHHHHhhhcCCC
Q 046177 130 YY-SKLKHESQ-CIFRPYNCPYAGSECTVMG-DIPYLVAHLKDDHKV 173 (272)
Q Consensus 130 ~~-~~~~He~~-C~~~~~~CP~~~~~C~~~g-~~~~l~~Hl~~~H~~ 173 (272)
.. .+..|+.. -.-.++.|+. |+... ....|..|+...|..
T Consensus 78 ~~~~l~~H~~~h~~~~~~~C~~----C~~~f~~~~~l~~H~~~~H~~ 120 (124)
T 2dlq_A 78 RRMELRLHMVSHTGEMPYKCSS----CSQQFMQKKDLQSHMIKLHSG 120 (124)
T ss_dssp SHHHHHHHHHHHSSSCSEECSS----SCCEESSHHHHHHHHHHTSSC
T ss_pred CHHHHHHHHHHcCCCCCccCCC----ccchhCCHHHHHHHHHHHCCC
Confidence 54 57788764 3457899987 77776 457899999988864
No 89
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=87.83 E-value=0.15 Score=40.27 Aligned_cols=29 Identities=24% Similarity=0.289 Sum_probs=23.3
Q ss_pred CccccCCCCCCCCccccChhHHHH-HhhhcCC
Q 046177 142 FRPYNCPYAGSECTVMGDIPYLVA-HLKDDHK 172 (272)
Q Consensus 142 ~~~~~CP~~~~~C~~~g~~~~l~~-Hl~~~H~ 172 (272)
-..+.||+. ||+|.+...++.. |+...+.
T Consensus 102 ~L~v~Cpn~--GC~~~~~l~~l~~~H~~~~~~ 131 (141)
T 3knv_A 102 SLPAVCPSD--GCTWKGTLKEYESCHEGRCPL 131 (141)
T ss_dssp TSEEECCST--TCCCEEEHHHHHHHTTTCCHH
T ss_pred ccccccCCC--CCCCEeEHHHHHHHHHHHhHH
Confidence 457799984 5999999999998 9876443
No 90
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=86.58 E-value=0.27 Score=33.15 Aligned_cols=37 Identities=24% Similarity=0.661 Sum_probs=29.0
Q ss_pred eeccccccCcCC-ccccc-CCceeccCccccc---CCCCCCc
Q 046177 58 ECPVCLNAMYPP-IHQCS-NGHTLCSGCKPRV---HNRCPTC 94 (272)
Q Consensus 58 ~CpiC~~~l~~P-v~qC~-cGH~~C~~C~~~~---~~~CP~C 94 (272)
.|-.|...+.+. +++|+ |++.||.+|-.-+ ...||-|
T Consensus 17 ~C~~C~~~~~~~~~y~C~~C~~~FC~dCD~fiHe~Lh~CPgC 58 (59)
T 1z60_A 17 FCYGCQGELKDQHVYVCAVCQNVFCVDCDVFVHDSLHSCPGC 58 (59)
T ss_dssp EETTTTEECTTSEEECCTTTTCCBCHHHHHTTTTTSCSSSTT
T ss_pred cccccCcccCCCccEECCccCcCcccchhHHHHhhccCCcCC
Confidence 499999988655 48898 9999999994333 3689987
No 91
>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1
Probab=86.55 E-value=1.9 Score=30.85 Aligned_cols=52 Identities=15% Similarity=0.232 Sum_probs=32.3
Q ss_pred CCCcccccCCCCceecc-CcHHhhhhcC-CCccccCCCCCCCCcccc-ChhHHHHHhhhcCCC
Q 046177 114 ELPCKYQSYGCMGIYPY-YSKLKHESQC-IFRPYNCPYAGSECTVMG-DIPYLVAHLKDDHKV 173 (272)
Q Consensus 114 ~v~C~~~~~GC~~~~~~-~~~~~He~~C-~~~~~~CP~~~~~C~~~g-~~~~l~~Hl~~~H~~ 173 (272)
.+.|+. |...+.. ..+..|+..- .-.++.|+. |+... ....|..|++..+..
T Consensus 45 ~~~C~~----C~~~f~~~~~l~~H~~~h~~~~~~~C~~----C~~~f~~~~~L~~H~~~H~~~ 99 (106)
T 2ee8_A 45 PYTCDI----CHKAFRRQDHLRDHRYIHSKEKPFKCQE----CGKGFCQSRTLAVHKTLHMQT 99 (106)
T ss_dssp CCBCSS----SCCBCSCHHHHHHHGGGSCCCCTTSCSS----SCCCCSSHHHHHHHHHHTTSC
T ss_pred CcCCCC----ccchhCCHHHHHHHHHHhCCCCCeECCC----cCCcccCHHHHHHHHHHhCCC
Confidence 355553 5555433 3456676532 346788987 77666 567899998765543
No 92
>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Probab=85.95 E-value=0.74 Score=32.37 Aligned_cols=52 Identities=25% Similarity=0.339 Sum_probs=34.9
Q ss_pred CCCcccccCCCCceeccC-cHHhhhhcC-CCccccCCCCCCCCcccc-ChhHHHHHhhhcCCC
Q 046177 114 ELPCKYQSYGCMGIYPYY-SKLKHESQC-IFRPYNCPYAGSECTVMG-DIPYLVAHLKDDHKV 173 (272)
Q Consensus 114 ~v~C~~~~~GC~~~~~~~-~~~~He~~C-~~~~~~CP~~~~~C~~~g-~~~~l~~Hl~~~H~~ 173 (272)
.+.|+. |...+... .+..|+..- .-.++.|+. |+... ....|..|++..|..
T Consensus 36 ~~~C~~----C~~~f~~~~~l~~H~~~h~~~~~~~C~~----C~~~f~~~~~l~~H~~~h~~~ 90 (96)
T 2dmd_A 36 PYKCKT----CDYAAADSSSLNKHLRIHSDERPFKCQI----CPYASRNSSQLTVHLRSHTGD 90 (96)
T ss_dssp SEECSS----SCCEESSHHHHHHHHHHSCCCCCEECSS----SSCEESSHHHHHHHHTTCCSC
T ss_pred CEeCCC----CCCccCCHHHHHHHHHHhCCCCCccCCC----CCCccCCHHHHHHHHHHhcCC
Confidence 355654 77666443 566787643 346789987 77766 567899999876653
No 93
>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4
Probab=84.48 E-value=0.72 Score=33.16 Aligned_cols=32 Identities=25% Similarity=0.525 Sum_probs=24.3
Q ss_pred eeeeccccccCc----CCccccc-CCceeccCccccc
Q 046177 56 LLECPVCLNAMY----PPIHQCS-NGHTLCSGCKPRV 87 (272)
Q Consensus 56 ~l~CpiC~~~l~----~Pv~qC~-cGH~~C~~C~~~~ 87 (272)
..-||-|..++. .+..+|. ||+.||..|...|
T Consensus 25 ~~wCP~C~~~~~~~~~~~~v~C~~C~~~FC~~C~~~w 61 (86)
T 2ct7_A 25 FLWCAQCSFGFIYEREQLEATCPQCHQTFCVRCKRQW 61 (86)
T ss_dssp EECCSSSCCCEECCCSCSCEECTTTCCEECSSSCSBC
T ss_pred EeECcCCCchheecCCCCceEeCCCCCccccccCCch
Confidence 334999988653 2235897 9999999999888
No 94
>1wff_A Riken cDNA 2810002D23 protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=83.45 E-value=2.7 Score=30.31 Aligned_cols=42 Identities=14% Similarity=0.362 Sum_probs=30.7
Q ss_pred CCeeeeccccccCcC--CcccccCCceeccCcccccCCCCCCccc
Q 046177 54 RELLECPVCLNAMYP--PIHQCSNGHTLCSGCKPRVHNRCPTCRH 96 (272)
Q Consensus 54 ~~~l~CpiC~~~l~~--Pv~qC~cGH~~C~~C~~~~~~~CP~Cr~ 96 (272)
...-.|..|..-+.- | ++|.||..||..=+..-...|+..-.
T Consensus 23 ~~~~rC~~C~kkvgl~~~-f~CrCg~~FC~~HRy~e~H~C~fDyK 66 (85)
T 1wff_A 23 KIMKHCFLCGKKTGLATS-FECRCGNNFCASHRYAEAHGCNYDYK 66 (85)
T ss_dssp CCCCBCSSSCCBCSSSSC-EECTTCCEECTTTCSTGGGTCCSCCS
T ss_pred ccCccchhhCCeecccCC-eEcCCCCEecccCCCccCCCCcchhh
Confidence 344689999985543 6 59999999999887554457876533
No 95
>2jmo_A Parkin; IBR, E3 ligase, zinc binding domain, RBR; NMR {Homo sapiens}
Probab=83.37 E-value=1.2 Score=31.50 Aligned_cols=39 Identities=26% Similarity=0.637 Sum_probs=29.5
Q ss_pred eeeecc--ccccCc----CCcccc------cCCceeccCcccccCCCCCCccc
Q 046177 56 LLECPV--CLNAMY----PPIHQC------SNGHTLCSGCKPRVHNRCPTCRH 96 (272)
Q Consensus 56 ~l~Cpi--C~~~l~----~Pv~qC------~cGH~~C~~C~~~~~~~CP~Cr~ 96 (272)
..-||. |...+. .+..+| .||+.||..|...|+. -.|..
T Consensus 25 ~~~CP~p~C~~~v~~~~~~~~v~C~~~~~~~C~~~FC~~C~~~wH~--~~C~~ 75 (80)
T 2jmo_A 25 GVLCPRPGCGAGLLPEPDQRKVTCEGGNGLGCGFAFCRECKEAYHE--GECSA 75 (80)
T ss_dssp SCCCCSSSCCCCCCCCSCTTSBCTTSSSTTCCSCCEETTTTEECCS--SCSSS
T ss_pred cEECCCCCCCcccEECCCCCcCCCCCCCCCCCCCeeccccCccccC--Ccccc
Confidence 556998 888764 234589 6999999999999964 55654
No 96
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=83.17 E-value=0.54 Score=40.51 Aligned_cols=45 Identities=20% Similarity=0.546 Sum_probs=35.7
Q ss_pred CeeeeccccccCcCCccccc-CCceeccCccccc-----CCCCCCcccCCCc
Q 046177 55 ELLECPVCLNAMYPPIHQCS-NGHTLCSGCKPRV-----HNRCPTCRHELGN 100 (272)
Q Consensus 55 ~~l~CpiC~~~l~~Pv~qC~-cGH~~C~~C~~~~-----~~~CP~Cr~~~~~ 100 (272)
....|.+|.+++..-+ .|+ |++.|=..|+.+| ...||.|+.+...
T Consensus 179 ~i~~C~iC~~iv~~g~-~C~~C~~~~H~~C~~~~~~~~~~~~CP~C~~~W~~ 229 (238)
T 3nw0_A 179 AVKICNICHSLLIQGQ-SCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPH 229 (238)
T ss_dssp TCCBCTTTCSBCSSCE-ECSSSCCEECHHHHHHHTTTCSSCBCTTTCCBCCS
T ss_pred CCCcCcchhhHHhCCc-ccCccChHHHHHHHHHHHHhCCCCCCCCCCCCCCC
Confidence 4678999999998654 786 8888888898876 2589999987653
No 97
>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Probab=82.77 E-value=2.1 Score=31.26 Aligned_cols=77 Identities=21% Similarity=0.305 Sum_probs=50.1
Q ss_pred CCCCCcccCCCcccchh--HHHHhhhcCCCcccccCCCCceecc-CcHHhhhhc----CCCccccCCCCCCCCcccc-Ch
Q 046177 89 NRCPTCRHELGNIRCLA--LEKVAASLELPCKYQSYGCMGIYPY-YSKLKHESQ----CIFRPYNCPYAGSECTVMG-DI 160 (272)
Q Consensus 89 ~~CP~Cr~~~~~~r~~~--le~~~~~l~v~C~~~~~GC~~~~~~-~~~~~He~~----C~~~~~~CP~~~~~C~~~g-~~ 160 (272)
..|+.|...+.....+. +..-...-.+.|+. |...+.. ..+..|+.. =.-.++.|+. |+... ..
T Consensus 8 ~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~----C~~~f~~~~~l~~H~~~~~~~~~~~~~~C~~----C~~~f~~~ 79 (124)
T 2dlq_A 8 VECPTCHKKFLSKYYLKVHNRKHTGEKPFECPK----CGKCYFRKENLLEHEARNCMNRSEQVFTCSV----CQETFRRR 79 (124)
T ss_dssp CCCTTTCCCCSSHHHHHHHHHHHSSCCSCBCTT----TCCBCSSHHHHHHHHHHCCCCSCCCCEECSS----SCCEESSH
T ss_pred CCCCCCCCcCCCHHHHHHHHHhCCCCCCeECCC----CCchhcCHHHHHHHHhhhhcCCCCCCeECCC----CCCccCCH
Confidence 47999988775432221 22223345677875 8877654 467789863 3456789987 87766 56
Q ss_pred hHHHHHhhhcCCC
Q 046177 161 PYLVAHLKDDHKV 173 (272)
Q Consensus 161 ~~l~~Hl~~~H~~ 173 (272)
..|..|+...+..
T Consensus 80 ~~l~~H~~~h~~~ 92 (124)
T 2dlq_A 80 MELRLHMVSHTGE 92 (124)
T ss_dssp HHHHHHHHHHSSS
T ss_pred HHHHHHHHHcCCC
Confidence 7899999876653
No 98
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=82.56 E-value=0.36 Score=35.79 Aligned_cols=38 Identities=34% Similarity=0.901 Sum_probs=29.3
Q ss_pred eeeccccccCcCCcccccCCceeccCccccc--CCCCCCcccCCC
Q 046177 57 LECPVCLNAMYPPIHQCSNGHTLCSGCKPRV--HNRCPTCRHELG 99 (272)
Q Consensus 57 l~CpiC~~~l~~Pv~qC~cGH~~C~~C~~~~--~~~CP~Cr~~~~ 99 (272)
..||+|...|.. .-|+..|..|-... ...||.|.+++.
T Consensus 33 ~~CP~Cq~eL~~-----~g~~~hC~~C~~~f~~~a~CPdC~q~Le 72 (101)
T 2jne_A 33 LHCPQCQHVLDQ-----DNGHARCRSCGEFIEMKALCPDCHQPLQ 72 (101)
T ss_dssp CBCSSSCSBEEE-----ETTEEEETTTCCEEEEEEECTTTCSBCE
T ss_pred ccCccCCCccee-----cCCEEECccccchhhccccCcchhhHHH
Confidence 789999998752 24566699997765 368999999874
No 99
>1wg2_A Zinc finger (AN1-like) family protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=82.50 E-value=2.2 Score=29.07 Aligned_cols=44 Identities=18% Similarity=0.303 Sum_probs=32.2
Q ss_pred CeeeeccccccCcCCcccccCCceeccCcccccCCCCCCcccCC
Q 046177 55 ELLECPVCLNAMYPPIHQCSNGHTLCSGCKPRVHNRCPTCRHEL 98 (272)
Q Consensus 55 ~~l~CpiC~~~l~~Pv~qC~cGH~~C~~C~~~~~~~CP~Cr~~~ 98 (272)
..-.|..|..-+.-+.++|.||..||..=+..-...|+..-...
T Consensus 14 ~~~rC~~C~kkvgl~~f~CrCg~~FC~~HR~~e~H~C~fDyk~~ 57 (64)
T 1wg2_A 14 PNNRCFSCNKKVGVMGFKCKCGSTFCGSHRYPEKHECSFDFKEV 57 (64)
T ss_dssp CSCSCTTTCCCCTTSCEECTTSCEECSSSCSSTTTTCCCCCSCS
T ss_pred cCCcChhhCCcccccCeEeecCCEecccCCCccccCCCcchhHH
Confidence 34579999997654457999999999988765555787664433
No 100
>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain, protein-DNA complex, DNA-B metal-binding, nucleus; HET: DNA; NMR {Rattus norvegicus}
Probab=82.37 E-value=1.2 Score=29.98 Aligned_cols=74 Identities=20% Similarity=0.363 Sum_probs=43.3
Q ss_pred CCCCcccCCCcccch--hHHHHhhhcCCCcccccCCCCceeccC-cHHhhhhc-CCCccccCCCCCCCCcccc-ChhHHH
Q 046177 90 RCPTCRHELGNIRCL--ALEKVAASLELPCKYQSYGCMGIYPYY-SKLKHESQ-CIFRPYNCPYAGSECTVMG-DIPYLV 164 (272)
Q Consensus 90 ~CP~Cr~~~~~~r~~--~le~~~~~l~v~C~~~~~GC~~~~~~~-~~~~He~~-C~~~~~~CP~~~~~C~~~g-~~~~l~ 164 (272)
.|+.|...+....++ -+..-...-.+.|+. |...+... .+..|+.. -.-.++.|+. |+... ....|.
T Consensus 3 ~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~----C~~~f~~~~~l~~H~~~h~~~~~~~C~~----C~~~f~~~~~l~ 74 (82)
T 2kmk_A 3 DCKICGKSFKRSSTLSTHLLIHSDTRPYPCQY----CGKRFHQKSDMKKHTFIHTGEKPHKCQV----CGKAFSQSSNLI 74 (82)
T ss_dssp ECSSSCCEESSHHHHHHHHHHHHTCCCEECSS----SCCEESSHHHHHHHHHHHHTCCCEECTT----TSCEESSHHHHH
T ss_pred cCCCCcccccCchhHHHHHHHcCCCCCeeCCc----CChhhCCHHHHHHHHHHhcCCCCCcCCC----cchhhCChHHHH
Confidence 477776665432221 122222344566765 77766543 56677652 2346788986 77766 557889
Q ss_pred HHhhhcC
Q 046177 165 AHLKDDH 171 (272)
Q Consensus 165 ~Hl~~~H 171 (272)
.|++..+
T Consensus 75 ~H~~~H~ 81 (82)
T 2kmk_A 75 THSRKHT 81 (82)
T ss_dssp HHHHHHC
T ss_pred HHHHhhC
Confidence 9987643
No 101
>2cup_A Skeletal muscle LIM-protein 1; four and half LIM domains protein 1, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
Probab=79.20 E-value=0.88 Score=33.08 Aligned_cols=45 Identities=20% Similarity=0.576 Sum_probs=35.8
Q ss_pred CeeeeccccccCcCCcccccCCceeccCccccc-CCCCCCcccCCC
Q 046177 55 ELLECPVCLNAMYPPIHQCSNGHTLCSGCKPRV-HNRCPTCRHELG 99 (272)
Q Consensus 55 ~~l~CpiC~~~l~~Pv~qC~cGH~~C~~C~~~~-~~~CP~Cr~~~~ 99 (272)
+=|.|..|...|....+.-..|..+|..|..+. ...|..|..+|.
T Consensus 32 ~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~~~~~C~~C~~~I~ 77 (101)
T 2cup_A 32 TCFRCAKCLHPLANETFVAKDNKILCNKCTTREDSPKCKGCFKAIV 77 (101)
T ss_dssp TTCCCSSSCCCTTSSCCEEETTEEECHHHHTTCCCCBCSSSCCBCC
T ss_pred cCCcccccCCCCCcCeeECcCCEEEChhHhhhhcCCccccCCCccc
Confidence 458899999999765333368999999998876 478999998875
No 102
>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1
Probab=78.16 E-value=1.8 Score=28.08 Aligned_cols=45 Identities=27% Similarity=0.437 Sum_probs=32.2
Q ss_pred CCceecc-CcHHhhhhc-C--CCccccCCCCCCCCcccc-ChhHHHHHhhhcCC
Q 046177 124 CMGIYPY-YSKLKHESQ-C--IFRPYNCPYAGSECTVMG-DIPYLVAHLKDDHK 172 (272)
Q Consensus 124 C~~~~~~-~~~~~He~~-C--~~~~~~CP~~~~~C~~~g-~~~~l~~Hl~~~H~ 172 (272)
|+..+.. ..+..|+.. - .-.++.|+. |+... ....|..|+...|.
T Consensus 16 C~k~f~~~~~l~~H~~~~H~~~~~~~~C~~----C~k~f~~~~~L~~H~~~~H~ 65 (66)
T 2drp_A 16 CSRVYTHISNFCRHYVTSHKRNVKVYPCPF----CFKEFTRKDNMTAHVKIIHK 65 (66)
T ss_dssp TCCEESSHHHHHHHHHHHSSSSCCCEECTT----TCCEESCHHHHHHHHHHHTC
T ss_pred CcchhCCHHHHHHHHHHHcCCCCcCeECCC----CCCccCCHHHHHHHHHHHcC
Confidence 6666654 356678764 2 567899987 77665 56789999998886
No 103
>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=78.03 E-value=2.2 Score=31.03 Aligned_cols=39 Identities=21% Similarity=0.277 Sum_probs=26.3
Q ss_pred CcHHhhhhc-CCCccccCCCCCCCCcccc-ChhHHHHHhhhcCCC
Q 046177 131 YSKLKHESQ-CIFRPYNCPYAGSECTVMG-DIPYLVAHLKDDHKV 173 (272)
Q Consensus 131 ~~~~~He~~-C~~~~~~CP~~~~~C~~~g-~~~~l~~Hl~~~H~~ 173 (272)
..|..|+.. -.-+++.|+. |+... ....|..|++..|..
T Consensus 66 ~~l~~H~~~H~~~~~~~C~~----C~k~f~~~~~L~~H~~~hh~~ 106 (115)
T 2dmi_A 66 RSLLEMEGKEDAQKVLKCMY----CGHSFESLQDLSVHMIKTKHY 106 (115)
T ss_dssp CCCCCCCCSCCCCSSCBCSS----SCCBCSSHHHHHHHHHHTTTT
T ss_pred HHHHHHhhccCCCcceECCC----CCCccCCHHHHHHHHHHhCCc
Confidence 344555542 2346889986 77666 467999999988764
No 104
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Probab=77.75 E-value=1 Score=46.20 Aligned_cols=62 Identities=13% Similarity=0.067 Sum_probs=52.6
Q ss_pred cCCCCeeeeccccccCcCCcccccCC-ceeccCccccc---CCCCCCcccCCCc---ccchhHHHHhhhc
Q 046177 51 SSVRELLECPVCLNAMYPPIHQCSNG-HTLCSGCKPRV---HNRCPTCRHELGN---IRCLALEKVAASL 113 (272)
Q Consensus 51 ~~~~~~l~CpiC~~~l~~Pv~qC~cG-H~~C~~C~~~~---~~~CP~Cr~~~~~---~r~~~le~~~~~l 113 (272)
.+.++.|.|||=.++|.+||.. +.| +++=+..+.+| ...||.=|.++.. .+|.++...+..+
T Consensus 886 ~~iP~~F~cPIs~~lM~DPVil-psG~~TydR~~I~~wl~~~~tdP~Tr~~L~~~~liPN~~Lk~~I~~w 954 (968)
T 3m62_A 886 GDVPDEFLDPLMYTIMKDPVIL-PASKMNIDRSTIKAHLLSDSTDPFNRMPLKLEDVTPNEELRQKILCF 954 (968)
T ss_dssp CCSCGGGBCTTTCSBCSSEEEC-TTTCCEEEHHHHHHHHTTCCBCTTTCCBCCGGGCEECHHHHHHHHHH
T ss_pred cCCcHHhCCcchhhHHhCCeEc-CCCCEEECHHHHHHHHhcCCCCCCCCCCCCcccccccHHHHHHHHHH
Confidence 5778999999999999999976 676 68999999998 4689998888864 6888888888765
No 105
>1wfp_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=77.69 E-value=6.7 Score=27.47 Aligned_cols=43 Identities=16% Similarity=0.298 Sum_probs=31.5
Q ss_pred CeeeeccccccCcCCcccccCCceeccCcccccCCCCCCcccC
Q 046177 55 ELLECPVCLNAMYPPIHQCSNGHTLCSGCKPRVHNRCPTCRHE 97 (272)
Q Consensus 55 ~~l~CpiC~~~l~~Pv~qC~cGH~~C~~C~~~~~~~CP~Cr~~ 97 (272)
..-.|..|..-+.-+-++|.||.+||..=+..-...|+..-..
T Consensus 24 ~~~RC~~C~kkvgL~~f~CrCg~~FCs~HRy~e~H~C~fDyk~ 66 (74)
T 1wfp_A 24 TATRCLSCNKKVGVTGFKCRCGSTFCGTHRYPESHECQFDFKG 66 (74)
T ss_dssp CCCBCSSSCCBCTTTCEECTTSCEECTTTCSTTTSCCCSCTTS
T ss_pred cCccchhhcCcccccceEeccCCEeccccCCCcCCCCcCchhH
Confidence 3457999997765545799999999998866554567765443
No 106
>2j7j_A Transcription factor IIIA; zinc finger module, alternative initiation, nuclear protein, phosphorylation, hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B 2hgh_A
Probab=77.58 E-value=2.2 Score=28.83 Aligned_cols=77 Identities=19% Similarity=0.374 Sum_probs=44.0
Q ss_pred CC--CCcccCCCcccch--hHHHHhhhcCCCcccccCCCCceeccC-cHHhhhhcCCCccccCCCCCCCCcccc-ChhHH
Q 046177 90 RC--PTCRHELGNIRCL--ALEKVAASLELPCKYQSYGCMGIYPYY-SKLKHESQCIFRPYNCPYAGSECTVMG-DIPYL 163 (272)
Q Consensus 90 ~C--P~Cr~~~~~~r~~--~le~~~~~l~v~C~~~~~GC~~~~~~~-~~~~He~~C~~~~~~CP~~~~~C~~~g-~~~~l 163 (272)
.| +.|...+....++ -+..-.....+.|+. .||...+... .+..|+..-.- +.|+..+ .|+... ....|
T Consensus 3 ~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~--~~C~~~f~~~~~l~~H~~~h~~--~~C~~~~-~C~~~f~~~~~l 77 (85)
T 2j7j_A 3 VCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPH--EGCDKRFSLPSRLKRHEKVHAG--YPCKKDD-SCSFVGKTWTLY 77 (85)
T ss_dssp ECCSTTCCCEESSHHHHHHHHHHHHTTCCEECCS--TTCCCEESSHHHHHHHHHHHHS--EECCSCS-SCCCEESSHHHH
T ss_pred cCCCCCCCcccCCHHHHHHHHHHhCCCCCeeCCC--CCCcCccCCHHHHHHHHHHhCC--CCCCCCC-CCCCccCCHHHH
Confidence 46 6676655432221 122223344567764 4688777553 56677753221 7787632 377766 45688
Q ss_pred HHHhhhcC
Q 046177 164 VAHLKDDH 171 (272)
Q Consensus 164 ~~Hl~~~H 171 (272)
..|++..|
T Consensus 78 ~~H~~~hh 85 (85)
T 2j7j_A 78 LKHVAECH 85 (85)
T ss_dssp HHHHHHCC
T ss_pred HHHHHhcC
Confidence 99987765
No 107
>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1
Probab=75.62 E-value=4.8 Score=25.32 Aligned_cols=47 Identities=19% Similarity=0.327 Sum_probs=31.0
Q ss_pred CCceecc-CcHHhhhhcC-CCccccCCCCCCCCcccc-ChhHHHHHhhhcCCCC
Q 046177 124 CMGIYPY-YSKLKHESQC-IFRPYNCPYAGSECTVMG-DIPYLVAHLKDDHKVD 174 (272)
Q Consensus 124 C~~~~~~-~~~~~He~~C-~~~~~~CP~~~~~C~~~g-~~~~l~~Hl~~~H~~~ 174 (272)
|...+.. ..+..|+..- .-.++.|+. |+... ....|..|+...|...
T Consensus 8 C~~~f~~~~~l~~H~~~h~~~~~~~C~~----C~~~f~~~~~l~~H~~~~H~~~ 57 (60)
T 2adr_A 8 CTRAFARQEHLKRHYRSHTNEKPYPCGL----CNRAFTRRDLLIRHAQKIHSGN 57 (60)
T ss_dssp TCCCBSCHHHHHHHHHTTTSSCSEECTT----TCCEESSHHHHHHHHTTTSCCS
T ss_pred CccccCCHHHHHHHHHHhCCCCCccCCC----CCCccCCHHHHHHHHHHHcCCc
Confidence 5554443 3456676532 346789987 77665 5678999998888643
No 108
>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Probab=75.42 E-value=5.3 Score=30.37 Aligned_cols=47 Identities=32% Similarity=0.574 Sum_probs=19.5
Q ss_pred CCCceecc-CcHHhhh-h-cCCCccccCCCCCCCCcccc-ChhHHHHHhhhcC
Q 046177 123 GCMGIYPY-YSKLKHE-S-QCIFRPYNCPYAGSECTVMG-DIPYLVAHLKDDH 171 (272)
Q Consensus 123 GC~~~~~~-~~~~~He-~-~C~~~~~~CP~~~~~C~~~g-~~~~l~~Hl~~~H 171 (272)
||+..+.. ..|..|+ . --.-.++.|+.++ |+... ....|..|++..|
T Consensus 104 ~C~~~f~~~~~L~~H~~~~H~~~~~~~C~~~~--C~~~f~~~~~L~~H~~~hh 154 (155)
T 2gli_A 104 GCSKAFSNASDRAKHQNRTHSNEKPYVCKLPG--CTKRYTDPSSLRKHVKTVH 154 (155)
T ss_dssp TCCCEESSSSTTHHHHHHTTCSCCCEECCSTT--TCCEESSHHHHHHHHHHSC
T ss_pred CCCCccCCHHHHHHHHHHhcCCCCCeeCCCCC--CccccCCHHHHHHHHHhhc
Confidence 35444432 2344454 2 1223445554321 44443 2345555555443
No 109
>1wfh_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=75.26 E-value=3.3 Score=28.24 Aligned_cols=41 Identities=20% Similarity=0.321 Sum_probs=30.5
Q ss_pred eeeeccccccCcCCcccccCCceeccCcccccCCCCCCccc
Q 046177 56 LLECPVCLNAMYPPIHQCSNGHTLCSGCKPRVHNRCPTCRH 96 (272)
Q Consensus 56 ~l~CpiC~~~l~~Pv~qC~cGH~~C~~C~~~~~~~CP~Cr~ 96 (272)
.-.|..|..-+.-+-++|.||..||..=+..-...|+..-.
T Consensus 15 ~~rC~~C~kkvgl~~f~CrCg~~FC~~HRy~e~H~C~fDyk 55 (64)
T 1wfh_A 15 PNRCTVCRKRVGLTGFMCRCGTTFCGSHRYPEVHGCTFDFK 55 (64)
T ss_dssp CCCCTTTCCCCCTTCEECSSSCEECTTTCSTTTTTCCCCCS
T ss_pred CCcChhhCCccCccCEEeecCCEeccccCCcccCCCCchhh
Confidence 35799999966544479999999999886655456776543
No 110
>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB domain containing protein 22B, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=74.90 E-value=2.9 Score=30.03 Aligned_cols=52 Identities=17% Similarity=0.242 Sum_probs=36.1
Q ss_pred cCCCcccccCCCCceeccC-cHHhhhhcC-CCccccCCCCCCCCcccc-ChhHHHHHhhhcCC
Q 046177 113 LELPCKYQSYGCMGIYPYY-SKLKHESQC-IFRPYNCPYAGSECTVMG-DIPYLVAHLKDDHK 172 (272)
Q Consensus 113 l~v~C~~~~~GC~~~~~~~-~~~~He~~C-~~~~~~CP~~~~~C~~~g-~~~~l~~Hl~~~H~ 172 (272)
..+.|+. |...+... .+..|+..- .-.++.|+. |+... ....|..|++..|.
T Consensus 36 ~~~~C~~----C~~~f~~~~~l~~H~~~h~~~~~~~C~~----C~~~f~~~~~l~~H~~~~~~ 90 (110)
T 2csh_A 36 RPYGCGV----CGKKFKMKHHLVGHMKIHTGIKPYECNI----CAKRFMWRDSFHRHVTSCTK 90 (110)
T ss_dssp CSEECTT----TSCEESSSHHHHHHHTTTCCCCCEECSS----SCCEESCHHHHHHHHHHHHH
T ss_pred cCccCCC----CCcccCCHHHHHHHHHHcCCCCCeeCCC----CcchhcCHHHHHHHHHHccc
Confidence 3466765 77666554 466787633 346789987 77766 46789999988776
No 111
>2ctd_A Zinc finger protein 512; zinc binding, two ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=74.87 E-value=2.5 Score=30.42 Aligned_cols=55 Identities=16% Similarity=0.326 Sum_probs=40.6
Q ss_pred hhhcCCCcccccCCCCcee--ccCcHHhhhhcCCCccccCCCCCCCCcccc-ChhHHHHHhhhcCC
Q 046177 110 AASLELPCKYQSYGCMGIY--PYYSKLKHESQCIFRPYNCPYAGSECTVMG-DIPYLVAHLKDDHK 172 (272)
Q Consensus 110 ~~~l~v~C~~~~~GC~~~~--~~~~~~~He~~C~~~~~~CP~~~~~C~~~g-~~~~l~~Hl~~~H~ 172 (272)
...-.+.|+. |...+ ....|..|+....-+++.|+. |+... ....|..|+...|.
T Consensus 30 ~~~~~~~C~~----C~k~F~~~~~~L~~H~~~h~~k~~~C~~----Cgk~F~~~~~L~~H~~~~H~ 87 (96)
T 2ctd_A 30 VDKGSVSCPT----CQAVGRKTIEGLKKHMENCKQEMFTCHH----CGKQLRSLAGMKYHVMANHN 87 (96)
T ss_dssp HHTSCEECTT----TCSCEESSHHHHHHHHHHHCCCCCCCSS----SCCCCSSHHHHHHHHHHHTC
T ss_pred cCCCCcCCCC----CCCCcccCHHHHHHHHHHHCCCCeECCC----CCCeeCCHHHHHHHhHHhcC
Confidence 3455678876 88888 456788898755667899987 77665 45789999666775
No 112
>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=74.33 E-value=3.4 Score=27.73 Aligned_cols=52 Identities=19% Similarity=0.377 Sum_probs=35.5
Q ss_pred CCCcccccCCCCceecc-CcHHhhhh-cCC--CccccCCCCCCCCcccc-ChhHHHHHhhhcCCC
Q 046177 114 ELPCKYQSYGCMGIYPY-YSKLKHES-QCI--FRPYNCPYAGSECTVMG-DIPYLVAHLKDDHKV 173 (272)
Q Consensus 114 ~v~C~~~~~GC~~~~~~-~~~~~He~-~C~--~~~~~CP~~~~~C~~~g-~~~~l~~Hl~~~H~~ 173 (272)
++.|+. |...+.. ..|..|+. .-. -.++.|+. |+... ....|..|++..|..
T Consensus 15 ~~~C~~----C~k~f~~~~~L~~H~~~~h~~~~~~~~C~~----C~~~f~~~~~L~~H~~~~H~~ 71 (77)
T 2ct1_A 15 PYECYI----CHARFTQSGTMKMHILQKHTENVAKFHCPH----CDTVIARKSDLGVHLRKQHSY 71 (77)
T ss_dssp SEECTT----TCCEESCHHHHHHHHHHHSSSSCSSEECSS----SSCEESSHHHHHHHHHHTSCC
T ss_pred CeECCC----cCchhCCHHHHHHHHHHhcCCCCCccCCCC----CCCccCCHHHHHHHHHHhCCC
Confidence 345654 6666554 35667765 333 26899987 87766 467899999999975
No 113
>1wfl_A Zinc finger protein 216; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=73.63 E-value=5.7 Score=27.82 Aligned_cols=41 Identities=17% Similarity=0.339 Sum_probs=29.3
Q ss_pred eeeeccccccCcCCcccccCCceeccCcccccCCCCCCccc
Q 046177 56 LLECPVCLNAMYPPIHQCSNGHTLCSGCKPRVHNRCPTCRH 96 (272)
Q Consensus 56 ~l~CpiC~~~l~~Pv~qC~cGH~~C~~C~~~~~~~CP~Cr~ 96 (272)
.-.|..|..-+.-.-+.|.||..||..=+..-...|+..-.
T Consensus 25 ~nRC~~CrKkvgL~gf~CrCg~~FCs~HRy~e~H~C~fDyk 65 (74)
T 1wfl_A 25 KNRCFMCRKKVGLTGFDCRCGNLFCGLHRYSDKHNCPYDYK 65 (74)
T ss_dssp TTBCSSSCCBCGGGCEECTTSCEECSSSCSTTTTTCCCCGG
T ss_pred CCcChhhCCcccccCeecCCCCEechhcCCCccCCCcchhh
Confidence 34799998864332369999999999876654456766543
No 114
>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding protein, transcription/DNA complex; HET: DNA; 1.60A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C
Probab=70.50 E-value=4.3 Score=27.75 Aligned_cols=52 Identities=17% Similarity=0.239 Sum_probs=34.1
Q ss_pred hcCCCcccccCCCCceeccC-cHHhhhhc-CCCccccCCCCCCCCcccc-ChhHHHHHhhhcC
Q 046177 112 SLELPCKYQSYGCMGIYPYY-SKLKHESQ-CIFRPYNCPYAGSECTVMG-DIPYLVAHLKDDH 171 (272)
Q Consensus 112 ~l~v~C~~~~~GC~~~~~~~-~~~~He~~-C~~~~~~CP~~~~~C~~~g-~~~~l~~Hl~~~H 171 (272)
.-.+.|+. |...+... .+..|+.. -.-.++.|+. |+... ....|..|+...+
T Consensus 32 ~~~~~C~~----C~~~f~~~~~l~~H~~~h~~~~~~~C~~----C~~~f~~~~~l~~H~~~H~ 86 (90)
T 1a1h_A 32 QKPFQCRI----CMRNFSRSDHLTTHIRTHTGEKPFACDI----CGRKFARSDERKRHTKIHL 86 (90)
T ss_dssp CCCEECTT----TCCEESCHHHHHHHHHHHHCCCCEECTT----TCCEESSHHHHHHHHGGGG
T ss_pred CCCccCCC----CCcccCCHHHHHHHHHHcCCCCCccCCC----CCchhCCHHHHHHHHHHhc
Confidence 34566765 77766543 46677652 2346788986 77766 4568999987644
No 115
>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine zipper, X-RAY crystallography, structure-based design, zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 PDB: 1xf7_A
Probab=70.06 E-value=0.28 Score=34.44 Aligned_cols=75 Identities=12% Similarity=0.168 Sum_probs=46.1
Q ss_pred CCCCcccCCCcccch--hHHHHhhhcCCCcccccCCCCceecc-CcHHhhhhcCCCccccCCCCCCCCcccc-ChhHHHH
Q 046177 90 RCPTCRHELGNIRCL--ALEKVAASLELPCKYQSYGCMGIYPY-YSKLKHESQCIFRPYNCPYAGSECTVMG-DIPYLVA 165 (272)
Q Consensus 90 ~CP~Cr~~~~~~r~~--~le~~~~~l~v~C~~~~~GC~~~~~~-~~~~~He~~C~~~~~~CP~~~~~C~~~g-~~~~l~~ 165 (272)
.|+.|...+....++ -+..-...-++.|+. |...+.. ..+..|+..---.++.|+. |+... ....|..
T Consensus 5 ~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~----C~k~f~~~~~L~~H~~~h~~~~~~c~~----C~~~f~~~~~L~~ 76 (88)
T 1llm_C 5 QCRICMRNFSRSDHLTTHIRTHTGEKPFACDI----CGRKFARSDERKRHRDIQHILPILEDK----VEELLSKNYHLEN 76 (88)
T ss_dssp ECTTTCCEESCHHHHHHHHHHHHCCCCEECTT----TCCEESSHHHHHHHHHHHTHHHHHHHH----HHHHHHHHHHHHH
T ss_pred cCCCCCCccCCHHHHHHHHHHcCCCCCccCCC----CCCccCCHHHHHHHHHHhCCCcchHHH----HHHHHHHHhhhHH
Confidence 577777666432221 122223344567765 7777655 4566787654457788875 77655 4568999
Q ss_pred HhhhcCC
Q 046177 166 HLKDDHK 172 (272)
Q Consensus 166 Hl~~~H~ 172 (272)
|++..|.
T Consensus 77 H~~~~h~ 83 (88)
T 1llm_C 77 EVARLKK 83 (88)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9998886
No 116
>3uk3_C Zinc finger protein 217; transcription factor, DNA binding, DNA-metal BI protein complex; 2.10A {Homo sapiens}
Probab=69.87 E-value=3.5 Score=25.64 Aligned_cols=45 Identities=27% Similarity=0.479 Sum_probs=27.5
Q ss_pred CCceecc-CcHHhhhhcC-CCccccCCCCCCCCcccc-ChhHHHHHhhhcCC
Q 046177 124 CMGIYPY-YSKLKHESQC-IFRPYNCPYAGSECTVMG-DIPYLVAHLKDDHK 172 (272)
Q Consensus 124 C~~~~~~-~~~~~He~~C-~~~~~~CP~~~~~C~~~g-~~~~l~~Hl~~~H~ 172 (272)
|...+.. ..+..|+..- .-.++.|+. |+... ....|..|+...|+
T Consensus 10 C~~~f~~~~~l~~H~~~h~~~~~~~C~~----C~~~f~~~~~l~~H~~~hh~ 57 (57)
T 3uk3_C 10 CGKFFRSNYYLNIHLRTHTGEKPYKCEF----CEYAAAQKTSLRYHLERHHK 57 (57)
T ss_dssp TCCBCSCHHHHHHHHHHHHCCCCEECSS----SSCEESSHHHHHHHHHHHC-
T ss_pred CcchhCChHHHHHHHHHcCCCCCcCCCC----CcchhCCHHHHHHHHHHhcC
Confidence 4444433 2345565421 245788986 77765 56789999988774
No 117
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=69.47 E-value=1.2 Score=32.89 Aligned_cols=47 Identities=30% Similarity=0.586 Sum_probs=36.5
Q ss_pred CCCCeeeeccccccCcCCcccccCCceeccCccccc---CCCCCCcccCCCc
Q 046177 52 SVRELLECPVCLNAMYPPIHQCSNGHTLCSGCKPRV---HNRCPTCRHELGN 100 (272)
Q Consensus 52 ~~~~~l~CpiC~~~l~~Pv~qC~cGH~~C~~C~~~~---~~~CP~Cr~~~~~ 100 (272)
.+.--+.|-.|-...+.= +.| ..|-.|..|+..+ ...||+|..++..
T Consensus 24 s~~G~~nCKsCWf~~k~L-V~C-~dHYLCl~CLtlmL~~SdrCpIC~~pLPt 73 (99)
T 2ko5_A 24 THLGPQFCKSCWFENKGL-VEC-NNHYLCLNCLTLLLSVSNRCPICKMPLPT 73 (99)
T ss_dssp CCSCCCCCCSSCSCCSSE-EEC-SSCEEEHHHHHHTCSSSSEETTTTEECCC
T ss_pred cccCcccChhhccccCCe-eee-cchhhHHHHHHHHHhhccCCcccCCcCCc
Confidence 344557899898776654 476 7899999999886 4789999998864
No 118
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=69.08 E-value=1.8 Score=30.99 Aligned_cols=38 Identities=32% Similarity=0.842 Sum_probs=26.8
Q ss_pred eeeccccccCcCCcccccCCceeccCccccc--CCCCCCcccCCC
Q 046177 57 LECPVCLNAMYPPIHQCSNGHTLCSGCKPRV--HNRCPTCRHELG 99 (272)
Q Consensus 57 l~CpiC~~~l~~Pv~qC~cGH~~C~~C~~~~--~~~CP~Cr~~~~ 99 (272)
..||.|...|.. .-++..|..|-..+ ...||.|.+++.
T Consensus 3 ~~CP~C~~~l~~-----~~~~~~C~~C~~~~~~~afCPeCgq~Le 42 (81)
T 2jrp_A 3 ITCPVCHHALER-----NGDTAHCETCAKDFSLQALCPDCRQPLQ 42 (81)
T ss_dssp CCCSSSCSCCEE-----CSSEEECTTTCCEEEEEEECSSSCSCCC
T ss_pred CCCCCCCCcccc-----CCCceECccccccCCCcccCcchhhHHH
Confidence 679999988742 23455688886655 257999988874
No 119
>2xqn_T Testin, TESS; metal-binding protein, cytoskeleton, focal adhesion, acrosom; 2.62A {Homo sapiens}
Probab=68.02 E-value=1.8 Score=32.80 Aligned_cols=45 Identities=18% Similarity=0.397 Sum_probs=35.8
Q ss_pred CeeeeccccccCcCCcccccCCceeccCccccc-CCCCCCcccCCC
Q 046177 55 ELLECPVCLNAMYPPIHQCSNGHTLCSGCKPRV-HNRCPTCRHELG 99 (272)
Q Consensus 55 ~~l~CpiC~~~l~~Pv~qC~cGH~~C~~C~~~~-~~~CP~Cr~~~~ 99 (272)
+-|.|..|...|..--+.-..|..+|..|..+. ...|..|..+|.
T Consensus 29 ~CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~~~~~C~~C~~~I~ 74 (126)
T 2xqn_T 29 KHFCCFDCDSILAGEIYVMVNDKPVCKPCYVKNHAVVCQGCHNAID 74 (126)
T ss_dssp GGSBCTTTCCBCTTSEEEEETTEEEEHHHHHHHSCCBCTTTCSBCC
T ss_pred CCCCcCCCCCCCCcCEEEeECCEEechHHhCcCcCccCcccCCcCC
Confidence 558999999998764333368999999998875 478999999886
No 120
>2eod_A TNF receptor-associated factor 4; zinc binding, NF-KB, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=68.02 E-value=2.4 Score=27.69 Aligned_cols=28 Identities=21% Similarity=0.248 Sum_probs=23.3
Q ss_pred hcCCCccccCCCCCCCCccccChhHHHHHhhh
Q 046177 138 SQCIFRPYNCPYAGSECTVMGDIPYLVAHLKD 169 (272)
Q Consensus 138 ~~C~~~~~~CP~~~~~C~~~g~~~~l~~Hl~~ 169 (272)
..|+.+++.|+. |+.......|..|+..
T Consensus 4 ~~C~~~~~~C~~----C~k~f~~~~L~~H~~~ 31 (66)
T 2eod_A 4 GSSGKRTQPCTY----CTKEFVFDTIQSHQYQ 31 (66)
T ss_dssp SCCCCCEEECSS----SCCEEEHHHHHHHHHH
T ss_pred ccCCCCCeeccc----cCCccCHHHHHHHHHH
Confidence 479999999997 7766667899999876
No 121
>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A
Probab=67.05 E-value=7.1 Score=24.07 Aligned_cols=45 Identities=27% Similarity=0.376 Sum_probs=28.4
Q ss_pred CCceecc-CcHHhhhhc-CCCccccCCCCCCCCcccc-ChhHHHHHhhhcCC
Q 046177 124 CMGIYPY-YSKLKHESQ-CIFRPYNCPYAGSECTVMG-DIPYLVAHLKDDHK 172 (272)
Q Consensus 124 C~~~~~~-~~~~~He~~-C~~~~~~CP~~~~~C~~~g-~~~~l~~Hl~~~H~ 172 (272)
|...+.. ..+..|+.. -.-.++.|+. |+... ....|..|+...|.
T Consensus 7 C~~~f~~~~~l~~H~~~h~~~~~~~C~~----C~~~f~~~~~l~~H~~~h~~ 54 (57)
T 1bbo_A 7 CGIRXKKPSMLKKHIRTHTDVRPYHCTY----CNFSFKTKGNLTKHMKSKAH 54 (57)
T ss_dssp TCCBCSSHHHHHHHHHHTSSCCCEECSS----SSCEESSHHHHHHHHHSSSS
T ss_pred CcCcCCCHHHHHHHHHhcCCCCCccCCC----CCchhcCHHHHHHHHHHhcc
Confidence 5544433 345567653 2346788986 77666 45789999876554
No 122
>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C*
Probab=66.47 E-value=4.3 Score=32.28 Aligned_cols=75 Identities=19% Similarity=0.367 Sum_probs=41.2
Q ss_pred CCCCcccCCCcccchh--HHHHhhhcCCCcccccCCCCceeccC-cHHhhhhc-CCCccccCCCCCCCCcccc-ChhHHH
Q 046177 90 RCPTCRHELGNIRCLA--LEKVAASLELPCKYQSYGCMGIYPYY-SKLKHESQ-CIFRPYNCPYAGSECTVMG-DIPYLV 164 (272)
Q Consensus 90 ~CP~Cr~~~~~~r~~~--le~~~~~l~v~C~~~~~GC~~~~~~~-~~~~He~~-C~~~~~~CP~~~~~C~~~g-~~~~l~ 164 (272)
.|+.|...+....++. +..-.....+.|+. |+..+... .+..|+.. -.-.++.|+. |+... ....|.
T Consensus 79 ~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~----C~~~f~~~~~l~~H~~~h~~~~~~~C~~----C~~~f~~~~~L~ 150 (190)
T 2i13_A 79 KCPECGKSFSQRANLRAHQRTHTGEKPYACPE----CGKSFSQLAHLRAHQRTHTGEKPYKCPE----CGKSFSREDNLH 150 (190)
T ss_dssp ECTTTCCEESCHHHHHHHHHHHHTCCCEECTT----TCCEESSHHHHHHHHHHHHCCCCEECTT----TCCEESCHHHHH
T ss_pred cCcccCCccCCHHHHHHHHHhcCCCCCCcCCC----CCCccCCHHHHHHHHHHhCCCCCeECCC----CCcccCCHHHHH
Confidence 5888876654322211 11222334566764 77666543 45667653 2345677775 66655 445777
Q ss_pred HHhhhcCC
Q 046177 165 AHLKDDHK 172 (272)
Q Consensus 165 ~Hl~~~H~ 172 (272)
.|+...+.
T Consensus 151 ~H~~~H~~ 158 (190)
T 2i13_A 151 THQRTHTG 158 (190)
T ss_dssp HHHHHHHC
T ss_pred HHHHhcCC
Confidence 77766544
No 123
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=65.32 E-value=2.8 Score=30.50 Aligned_cols=43 Identities=21% Similarity=0.589 Sum_probs=32.7
Q ss_pred eeeccccccCc-----CCccccc-CCceeccCccccc----CCCCCCcccCCC
Q 046177 57 LECPVCLNAMY-----PPIHQCS-NGHTLCSGCKPRV----HNRCPTCRHELG 99 (272)
Q Consensus 57 l~CpiC~~~l~-----~Pv~qC~-cGH~~C~~C~~~~----~~~CP~Cr~~~~ 99 (272)
-.|.||.+-+- ++..-|. |+-.+|+.|.+-- ...||.|+.++.
T Consensus 17 qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErkeG~q~CpqCktrYk 69 (93)
T 1weo_A 17 QFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERREGTQNCPQCKTRYK 69 (93)
T ss_dssp CBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHHTSCSSCTTTCCCCC
T ss_pred CccccccCccccCCCCCEEEeeeccCChhhHHHHHHHHhccCccccccCCccc
Confidence 47999998742 3555665 8889999997653 478999998874
No 124
>2lt7_A Transcriptional regulator kaiso; zinc finger, double helix, metal binding protein-DNA complex; HET: DNA; NMR {Homo sapiens} PDB: 4f6m_A* 4f6n_A*
Probab=65.27 E-value=3.5 Score=31.65 Aligned_cols=77 Identities=25% Similarity=0.526 Sum_probs=45.3
Q ss_pred CCCCcccCCCcccchh--HHHHhhhcCCCcccccCCCCceeccC-cHHhhhhcC-CCccccCCCCCCCCcccc-ChhHHH
Q 046177 90 RCPTCRHELGNIRCLA--LEKVAASLELPCKYQSYGCMGIYPYY-SKLKHESQC-IFRPYNCPYAGSECTVMG-DIPYLV 164 (272)
Q Consensus 90 ~CP~Cr~~~~~~r~~~--le~~~~~l~v~C~~~~~GC~~~~~~~-~~~~He~~C-~~~~~~CP~~~~~C~~~g-~~~~l~ 164 (272)
.|+.|...+....++. +..-...-++.|+. |+..+... .|..|+..= .-+|+.|+. |+... ....|.
T Consensus 24 ~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~----C~k~F~~~~~L~~H~~~H~~~k~~~C~~----C~k~F~~~~~L~ 95 (133)
T 2lt7_A 24 ICIVCKRSYVCLTSLRRHFNIHSWEKKYPCRY----CEKVFPLAEYRTKHEIHHTGERRYQCLA----CGKSFINYQFMS 95 (133)
T ss_dssp EETTTCCEESCHHHHHHHHHHHHCCSCEECSS----SSCEESSHHHHHHHHHHHHTCCCEEESS----SCCEESSHHHHH
T ss_pred ECCCCCCCcCCHHHHHHHHHHcCCCCCeeCCc----cCeecccccchhhhccccCCCccccCCC----CCCCcCCHHHHH
Confidence 4666655554322211 11112233456764 77766554 566777632 236788986 77766 567899
Q ss_pred HHhhhcCCCC
Q 046177 165 AHLKDDHKVD 174 (272)
Q Consensus 165 ~Hl~~~H~~~ 174 (272)
.|++..|...
T Consensus 96 ~H~~~hh~~~ 105 (133)
T 2lt7_A 96 SHIKSVHSQD 105 (133)
T ss_dssp HHHHHHTCCC
T ss_pred HHhHHhcCCC
Confidence 9999988643
No 125
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=64.59 E-value=6.3 Score=32.42 Aligned_cols=43 Identities=21% Similarity=0.458 Sum_probs=29.2
Q ss_pred eeccccccCcCC-----ccccc-CCceeccCccccc--------------CCCCCCcccCCCc
Q 046177 58 ECPVCLNAMYPP-----IHQCS-NGHTLCSGCKPRV--------------HNRCPTCRHELGN 100 (272)
Q Consensus 58 ~CpiC~~~l~~P-----v~qC~-cGH~~C~~C~~~~--------------~~~CP~Cr~~~~~ 100 (272)
.||+|..+..+. ++||. |...|=..|..-. .-.||.|+..-..
T Consensus 4 ~CpiC~k~Y~~~~~~~~MIqCd~C~~W~H~~Cvgi~~~~~e~~~~~pe~~~y~Cp~C~~~~~~ 66 (183)
T 3lqh_A 4 FCPLCDKCYDDDDYESKMMQCGKCDRWVHSKCENLSDEMYEILSNLPESVAYTCVNCTERHPA 66 (183)
T ss_dssp BCTTTCCBCTTCCTTCCEEECTTTCCEEEGGGSSCCHHHHHHHHHSHHHHCCCCTTTCCSSSC
T ss_pred cCCCCcCccCCcccCCCeEECCCCCcccchhccccCHHHHHHhhcCCCCCeeECcCCCCCCCH
Confidence 499999987643 67887 8866655554221 2579999876543
No 126
>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=64.45 E-value=5.9 Score=25.87 Aligned_cols=46 Identities=28% Similarity=0.466 Sum_probs=32.0
Q ss_pred CCceecc-CcHHhhhhc-CCCccccCCCCCCCCcccc-ChhHHHHHhhhcCCC
Q 046177 124 CMGIYPY-YSKLKHESQ-CIFRPYNCPYAGSECTVMG-DIPYLVAHLKDDHKV 173 (272)
Q Consensus 124 C~~~~~~-~~~~~He~~-C~~~~~~CP~~~~~C~~~g-~~~~l~~Hl~~~H~~ 173 (272)
|...+.. ..|..|+.. -.-+++.|+. |+... ....|..|+...|..
T Consensus 15 C~k~f~~~~~L~~H~~~H~~~~~~~C~~----C~~~f~~~~~L~~H~~~h~~~ 63 (70)
T 1x5w_A 15 CSYSCSSKAALRIHERIHCTDRPFKCNY----CSFDTKQPSNLSKHMKKFHGD 63 (70)
T ss_dssp SSCEESSHHHHHHHHGGGCCSCSEECSS----SSCEESSHHHHHHHHHHHHSS
T ss_pred CCcccCCHHHHHHHHHHcCCCCCEeCCC----CCCccCCHHHHHHHHHHHhCC
Confidence 6665544 356677764 2456789987 77766 457899999887764
No 127
>1ubd_C Protein (YY1 zinc finger domain); transcription initiation, initiator element, zinc finger protein, DNA- protein recognition; HET: DNA; 2.50A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A*
Probab=64.31 E-value=3.2 Score=30.45 Aligned_cols=107 Identities=21% Similarity=0.400 Sum_probs=56.6
Q ss_pred Ceeeec--cccccCcCCcccccCCceeccCcccccCCCCCCcccCCCcccchhHHHHh----hhcCCCcccccCCCCcee
Q 046177 55 ELLECP--VCLNAMYPPIHQCSNGHTLCSGCKPRVHNRCPTCRHELGNIRCLALEKVA----ASLELPCKYQSYGCMGIY 128 (272)
Q Consensus 55 ~~l~Cp--iC~~~l~~Pv~qC~cGH~~C~~C~~~~~~~CP~Cr~~~~~~r~~~le~~~----~~l~v~C~~~~~GC~~~~ 128 (272)
..+.|+ +|...+...... -.|.-=. ..+ ...|+.|...+....+ |..-+ ..-.+.|+. .+|...+
T Consensus 4 ~~~~C~~~~C~~~f~~~~~l--~~H~~~h--~~~-~~~C~~C~~~f~~~~~--l~~H~~~h~~~~~~~C~~--~~C~~~f 74 (124)
T 1ubd_C 4 RTIACPHKGCTKMFRDNSAM--RKHLHTH--GPR-VHVCAECGKAFVESSK--LKRHQLVHTGEKPFQCTF--EGCGKRF 74 (124)
T ss_dssp -CEECCSTTCCCEESSHHHH--HHHHGGG--SCC-CEECTTTCCEESSHHH--HHHHGGGTSCCCCEECCS--TTCCCEE
T ss_pred CcccCCCCCCcCccCCHHHH--HHHHHHc--CCC-CeECCCCCchhCCHHH--HHHHHHHcCCCCCeeCCC--CCCcCcc
Confidence 346777 777776554211 1122100 011 2468888876654222 22211 223455653 2588777
Q ss_pred ccC-cHHhhhhc-CCCccccCCCCCCCCcccc-ChhHHHHHhhhcCC
Q 046177 129 PYY-SKLKHESQ-CIFRPYNCPYAGSECTVMG-DIPYLVAHLKDDHK 172 (272)
Q Consensus 129 ~~~-~~~~He~~-C~~~~~~CP~~~~~C~~~g-~~~~l~~Hl~~~H~ 172 (272)
... .+..|+.. -.-.++.||.. .|+... ....|..|+...+.
T Consensus 75 ~~~~~l~~H~~~h~~~~~~~C~~~--~C~~~f~~~~~L~~H~~~H~~ 119 (124)
T 1ubd_C 75 SLDFNLRTHVRIHTGDRPYVCPFD--GCNKKFAQSTNLKSHILTHAK 119 (124)
T ss_dssp SCHHHHHHHHHHHHCCCCCCCCST--TCCCCCSSTTTTHHHHHHHC-
T ss_pred CCHHHHHHHHHHhCCCCceECCCC--CCCCccCCHHHHHHHHHHHcc
Confidence 553 56677752 23467888752 377666 45688889876554
No 128
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=64.29 E-value=2.1 Score=32.39 Aligned_cols=45 Identities=20% Similarity=0.274 Sum_probs=34.5
Q ss_pred CeeeeccccccCc---CCcccccCCceeccCccccc-CC--CCCCcccCCCc
Q 046177 55 ELLECPVCLNAMY---PPIHQCSNGHTLCSGCKPRV-HN--RCPTCRHELGN 100 (272)
Q Consensus 55 ~~l~CpiC~~~l~---~Pv~qC~cGH~~C~~C~~~~-~~--~CP~Cr~~~~~ 100 (272)
+-|.|..|...|. ...+. ..|..+|..|..+. .. .|..|..+|..
T Consensus 31 ~CF~C~~C~~~L~~~~~~~~~-~~g~~yC~~cy~~~f~~~~~C~~C~~~I~~ 81 (122)
T 1m3v_A 31 RCLKCSSCQAQLGDIGTSSYT-KSGMILCRNDYIRLFGNSGAGGSGGHMGSG 81 (122)
T ss_dssp HHHCCSSSCCCTTTSEECCEE-ETTEEECHHHHHHHHCCCCSSSCSSCCSCC
T ss_pred hCCCcCCCCCcccccCCeEEE-ECCeeecHHHHHHHcCCCCccccCCCCcCc
Confidence 4478999999996 34444 68999999998775 34 89999988864
No 129
>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND, transcription factor, kruppel-like factor, GC-box promoter elements, structural genomics; NMR {Homo sapiens}
Probab=64.05 E-value=9.3 Score=26.49 Aligned_cols=51 Identities=20% Similarity=0.374 Sum_probs=32.1
Q ss_pred CCCcccccCCCCceeccC-cHHhhhh-cCCCccccCCCCCCCCcccc-ChhHHHHHhhhc
Q 046177 114 ELPCKYQSYGCMGIYPYY-SKLKHES-QCIFRPYNCPYAGSECTVMG-DIPYLVAHLKDD 170 (272)
Q Consensus 114 ~v~C~~~~~GC~~~~~~~-~~~~He~-~C~~~~~~CP~~~~~C~~~g-~~~~l~~Hl~~~ 170 (272)
.+.|++ .+|...+... .+..|+. .-.-.++.|+. |+... ....|..|++..
T Consensus 45 ~~~C~~--~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~----C~~~f~~~~~l~~H~~~H 98 (100)
T 2ebt_A 45 PYKCTW--EGCDWRFARSDELTRHYRKHTGAKPFQCGV----CNRSFSRSDHLALHMKRH 98 (100)
T ss_dssp CEECCS--SSCCCEESSHHHHHHHHHHHTSCCSCBCSS----SCCBCSSHHHHHHHHHHH
T ss_pred CeeCCC--CCCCCccCCHHHHHHHHHHhCCCCCeECCC----CcCccCCHHHHHHHHHHh
Confidence 455653 2577666443 4567765 33456788986 76665 457888897653
No 130
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3
Probab=63.32 E-value=4.1 Score=27.78 Aligned_cols=43 Identities=14% Similarity=0.274 Sum_probs=32.8
Q ss_pred CeeeeccccccCcC-CcccccCCceecc-Cccccc-CCCCCCcccCC
Q 046177 55 ELLECPVCLNAMYP-PIHQCSNGHTLCS-GCKPRV-HNRCPTCRHEL 98 (272)
Q Consensus 55 ~~l~CpiC~~~l~~-Pv~qC~cGH~~C~-~C~~~~-~~~CP~Cr~~~ 98 (272)
+-|.|..|...|.. +.+. ..|..+|. .|..+. ...|..|...+
T Consensus 26 ~CF~C~~C~~~L~~~~~~~-~~g~~yC~~~cy~~~f~~~C~~C~~~~ 71 (76)
T 1iml_A 26 PCLKCEKCGKTLTSGGHAE-HEGKPYCNHPCYSAMFGPKGFGRGGAE 71 (76)
T ss_dssp TTCBCTTTCCBCCTTTEEE-ETTEEEETTTHHHHHSSCCCSSCCCSS
T ss_pred CCCCccccCccCCCCceEC-cCCeEeeCHHHHHHHhCccCCCcCCce
Confidence 55789999999876 4433 68999999 698765 46888887654
No 131
>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=61.91 E-value=4.4 Score=27.14 Aligned_cols=47 Identities=17% Similarity=0.145 Sum_probs=31.6
Q ss_pred CCceeccC-cHHhhhhcC----CCccccCCCCCCCCcccc-ChhHHHHHhhhcCCCC
Q 046177 124 CMGIYPYY-SKLKHESQC----IFRPYNCPYAGSECTVMG-DIPYLVAHLKDDHKVD 174 (272)
Q Consensus 124 C~~~~~~~-~~~~He~~C----~~~~~~CP~~~~~C~~~g-~~~~l~~Hl~~~H~~~ 174 (272)
|...+... .|..|+..- .-.++.|+. |+... ....|..|++..|...
T Consensus 13 C~k~f~~~~~L~~H~~~h~~~~~~~~~~C~~----C~k~f~~~~~L~~H~~~~H~~~ 65 (78)
T 2d9h_A 13 CGFTCRQKASLNWHQRKHAETVAALRFPCEF----CGKRFEKPDSVAAHRSKSHPAL 65 (78)
T ss_dssp SCCEESSHHHHHHHHHHHHHHTTTCCEECTT----TCCEESSHHHHHHHHHHTSTTT
T ss_pred CCCeeCCHHHHHHHHHHhhccCCCcccCCCC----CCchhCCHHHHHHHHHHhCCCC
Confidence 66555443 455665532 256889987 77766 4578999999989753
No 132
>2lv2_A Insulinoma-associated protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=61.50 E-value=9.5 Score=26.90 Aligned_cols=46 Identities=20% Similarity=0.376 Sum_probs=33.2
Q ss_pred CCceeccC-cHHhhhhc-CCCccccCCCCCCCCcccc-ChhHHHHHhhhcCCC
Q 046177 124 CMGIYPYY-SKLKHESQ-CIFRPYNCPYAGSECTVMG-DIPYLVAHLKDDHKV 173 (272)
Q Consensus 124 C~~~~~~~-~~~~He~~-C~~~~~~CP~~~~~C~~~g-~~~~l~~Hl~~~H~~ 173 (272)
|...+... .|..|+.. =.-+|+.|+. |+... ....|..|++..|..
T Consensus 34 Cgk~F~~~~~L~~H~~~H~~~k~~~C~~----C~k~F~~~~~L~~H~~~~H~~ 82 (85)
T 2lv2_A 34 CGESFASKGAQERHLRLLHAAQVFPCKY----CPATFYSSPGLTRHINKCHPS 82 (85)
T ss_dssp SCCEESSHHHHHHHHHTTSCSSSEECTT----SSCEESSHHHHHHHHHTTCTT
T ss_pred CCCCcCcHHHHhhhhhhccCCCccCCCC----CCCEeCCHHHHHHhCcccCcC
Confidence 66666543 56778763 3457899987 87776 567999999988863
No 133
>2jr6_A UPF0434 protein NMA0874; solution, structural genomics, PSI, structure initiative, northeast structural genomics consort NESG; NMR {Neisseria meningitidis}
Probab=61.00 E-value=3.7 Score=28.26 Aligned_cols=32 Identities=16% Similarity=0.194 Sum_probs=21.6
Q ss_pred cCCCCeeeeccccccCcCCcccccCCceeccCccc
Q 046177 51 SSVRELLECPVCLNAMYPPIHQCSNGHTLCSGCKP 85 (272)
Q Consensus 51 ~~~~~~l~CpiC~~~l~~Pv~qC~cGH~~C~~C~~ 85 (272)
..+.+.|.||+|...|.--. ..|-.+|..|..
T Consensus 3 ~~LL~iL~CP~ck~~L~~~~---~~~~LiC~~cg~ 34 (68)
T 2jr6_A 3 KKFLDILVCPVTKGRLEYHQ---DKQELWSRQAKL 34 (68)
T ss_dssp CSSSCCCBCSSSCCBCEEET---TTTEEEETTTTE
T ss_pred hHHhhheECCCCCCcCeEeC---CCCEEEcCCCCc
Confidence 45778899999998775321 356666666643
No 134
>2jny_A Uncharacterized BCR; structure, CGR1, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: b.171.1.1
Probab=60.71 E-value=3.3 Score=28.46 Aligned_cols=34 Identities=15% Similarity=0.127 Sum_probs=22.8
Q ss_pred cccCCCCeeeeccccccCcCCcccccCCceeccCccc
Q 046177 49 VSSSVRELLECPVCLNAMYPPIHQCSNGHTLCSGCKP 85 (272)
Q Consensus 49 ~~~~~~~~l~CpiC~~~l~~Pv~qC~cGH~~C~~C~~ 85 (272)
+...+.+.|.||+|...|.--. .-|..+|..|..
T Consensus 3 md~~LLeiL~CP~ck~~L~~~~---~~g~LvC~~c~~ 36 (67)
T 2jny_A 3 LDPQLLEVLACPKDKGPLRYLE---SEQLLVNERLNL 36 (67)
T ss_dssp SCGGGTCCCBCTTTCCBCEEET---TTTEEEETTTTE
T ss_pred CCHHHHHHhCCCCCCCcCeEeC---CCCEEEcCCCCc
Confidence 3456788999999999765321 356666666643
No 135
>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Probab=60.59 E-value=11 Score=28.58 Aligned_cols=58 Identities=19% Similarity=0.327 Sum_probs=39.2
Q ss_pred hhcCCCcccccCCCCceeccC-cHHhhhhcC-CCccccCCCCCCCCcccc-ChhHHHHHhhhcCC
Q 046177 111 ASLELPCKYQSYGCMGIYPYY-SKLKHESQC-IFRPYNCPYAGSECTVMG-DIPYLVAHLKDDHK 172 (272)
Q Consensus 111 ~~l~v~C~~~~~GC~~~~~~~-~~~~He~~C-~~~~~~CP~~~~~C~~~g-~~~~l~~Hl~~~H~ 172 (272)
..-++.|+. .+|...+... .|..|+..- .-.++.|+.. +|+... ....|..|+...|.
T Consensus 64 ~~~~~~C~~--~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~--~C~~~f~~~~~L~~H~~~~H~ 124 (155)
T 2gli_A 64 GEKPHKCTF--EGCRKSYSRLENLKTHLRSHTGEKPYMCEHE--GCSKAFSNASDRAKHQNRTHS 124 (155)
T ss_dssp CCCCCCCCS--TTCCCCCSSHHHHHHHHHHTTTCCCEECCST--TCCCEESSSSTTHHHHHHTTC
T ss_pred CCCCccCCC--CCCCCcccCHHHHHHHHHHcCCCCCeeCCCC--CCCCccCCHHHHHHHHHHhcC
Confidence 345577763 2588777554 577888753 3467899863 387766 45689999877775
No 136
>2gqj_A Zinc finger protein KIAA1196; ZF-C2H2 like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=58.61 E-value=3.8 Score=29.16 Aligned_cols=56 Identities=20% Similarity=0.236 Sum_probs=38.4
Q ss_pred hhcCCCcccccCCCCceec--cCcHHhhhhcCC--CccccCCCCCCCCcccc-ChhHHHHHhhhcCCCC
Q 046177 111 ASLELPCKYQSYGCMGIYP--YYSKLKHESQCI--FRPYNCPYAGSECTVMG-DIPYLVAHLKDDHKVD 174 (272)
Q Consensus 111 ~~l~v~C~~~~~GC~~~~~--~~~~~~He~~C~--~~~~~CP~~~~~C~~~g-~~~~l~~Hl~~~H~~~ 174 (272)
..-.+.|+. |...+. ...|..|+.... -+++.|+. |+... ....|..|++..|...
T Consensus 21 ~~~~~~C~~----C~k~f~~~~~~L~~H~~~h~~~~~~~~C~~----C~k~F~~~~~L~~H~~~h~~~k 81 (98)
T 2gqj_A 21 ERGEAVCPT----CNVVTRKTLVGLKKHMEVCQKLQDALKCQH----CRKQFKSKAGLNYHTMAEHSAK 81 (98)
T ss_dssp TTSCCCCTT----TCCCCSSCSHHHHHHHHHHHHHHHHHSCSS----SCCCCSCHHHHHHHHHHHSCSC
T ss_pred cCCCcCCCC----CCCChhhhHHHHHHHHHHHcCCCCCEECCC----CCCccCCHHHHHHHHHHHcCCC
Confidence 344567775 777765 345667776433 36889987 77666 4678999999888643
No 137
>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN domain containing protein 16, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=58.13 E-value=18 Score=23.88 Aligned_cols=45 Identities=20% Similarity=0.294 Sum_probs=28.6
Q ss_pred CCceecc-CcHHhhhhcC-CCccccCCCCCCCCcccc-ChhHHHHHhhhcCC
Q 046177 124 CMGIYPY-YSKLKHESQC-IFRPYNCPYAGSECTVMG-DIPYLVAHLKDDHK 172 (272)
Q Consensus 124 C~~~~~~-~~~~~He~~C-~~~~~~CP~~~~~C~~~g-~~~~l~~Hl~~~H~ 172 (272)
|...+.. ..|..|+..- .-.++.|+. |+... ....|..|+...+.
T Consensus 24 C~~~f~~~~~l~~H~~~h~~~~~~~C~~----C~~~f~~~~~L~~H~~~H~~ 71 (77)
T 2cot_A 24 CGKSFSHSSDLSKHRRTHTGEKPYKCDE----CGKAFIQRSHLIGHHRVHTG 71 (77)
T ss_dssp SCCBCSCHHHHHHHHTTTCCSCSEECSS----SCCEESSHHHHHHHGGGSCC
T ss_pred CCcccCCHHHHHHHHHHcCCCcCeeCCC----CCCccCCHHHHHHHHHHhCC
Confidence 5555443 3456676532 346789987 77666 45789999876443
No 138
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=57.42 E-value=5.1 Score=30.79 Aligned_cols=32 Identities=22% Similarity=0.671 Sum_probs=23.9
Q ss_pred eeeeccccccCcCC--ccccc-CCceeccCccccc
Q 046177 56 LLECPVCLNAMYPP--IHQCS-NGHTLCSGCKPRV 87 (272)
Q Consensus 56 ~l~CpiC~~~l~~P--v~qC~-cGH~~C~~C~~~~ 87 (272)
.-.|.+|...|..- -.-|. ||++||..|....
T Consensus 69 ~~~C~~C~~~Fs~~~RrHHCR~CG~vfC~~Cs~~~ 103 (125)
T 1joc_A 69 VQNCMACGKGFSVTVRRHHCRQCGNIFCAECSAKN 103 (125)
T ss_dssp CCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCEE
T ss_pred CCCCcCcCCccccccccccCCCCCeEEChHHhCCc
Confidence 45799999987532 23576 9999999997653
No 139
>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C*
Probab=57.20 E-value=7.2 Score=30.91 Aligned_cols=51 Identities=22% Similarity=0.375 Sum_probs=25.8
Q ss_pred CCCcccccCCCCceecc-CcHHhhhhc-CCCccccCCCCCCCCcccc-ChhHHHHHhhhcCC
Q 046177 114 ELPCKYQSYGCMGIYPY-YSKLKHESQ-CIFRPYNCPYAGSECTVMG-DIPYLVAHLKDDHK 172 (272)
Q Consensus 114 ~v~C~~~~~GC~~~~~~-~~~~~He~~-C~~~~~~CP~~~~~C~~~g-~~~~l~~Hl~~~H~ 172 (272)
.+.|+. |+..+.. ..+..|+.. -.-.++.|+. |+... ....|..|+...+.
T Consensus 77 ~~~C~~----C~~~f~~~~~l~~H~~~h~~~~~~~C~~----C~~~f~~~~~l~~H~~~h~~ 130 (190)
T 2i13_A 77 PYKCPE----CGKSFSQRANLRAHQRTHTGEKPYACPE----CGKSFSQLAHLRAHQRTHTG 130 (190)
T ss_dssp CEECTT----TCCEESCHHHHHHHHHHHHTCCCEECTT----TCCEESSHHHHHHHHHHHHC
T ss_pred CccCcc----cCCccCCHHHHHHHHHhcCCCCCCcCCC----CCCccCCHHHHHHHHHHhCC
Confidence 455553 6555543 344555542 2334566664 55544 34466666665443
No 140
>2jtn_A LIM domain-binding protein 1, LIM/homeobox protein LHX3; intramolecular (fusion) protein-protein complex, protein binding/transcription complex; NMR {Mus musculus}
Probab=56.70 E-value=4.1 Score=32.98 Aligned_cols=13 Identities=15% Similarity=0.322 Sum_probs=6.6
Q ss_pred eeeccccccCcCC
Q 046177 57 LECPVCLNAMYPP 69 (272)
Q Consensus 57 l~CpiC~~~l~~P 69 (272)
-.|..|..++...
T Consensus 61 ~~C~~C~~~I~~~ 73 (182)
T 2jtn_A 61 PMCAGCDQHILDR 73 (182)
T ss_dssp CBCBTSSSBCCCS
T ss_pred CcCccCCCCccCc
Confidence 4555555555443
No 141
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=56.59 E-value=7.1 Score=27.54 Aligned_cols=32 Identities=28% Similarity=0.727 Sum_probs=23.6
Q ss_pred CeeeeccccccCcCC--ccccc-CCceeccCcccc
Q 046177 55 ELLECPVCLNAMYPP--IHQCS-NGHTLCSGCKPR 86 (272)
Q Consensus 55 ~~l~CpiC~~~l~~P--v~qC~-cGH~~C~~C~~~ 86 (272)
+.-.|.+|...+..- -.-|. ||.+||..|...
T Consensus 18 ~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~ 52 (82)
T 2yw8_A 18 EATHCRQCEKEFSISRRKHHCRNCGHIFCNTCSSN 52 (82)
T ss_dssp CCCBCTTTCCBCBTTBCCEECTTTCCEECSGGGCE
T ss_pred cCCcccCcCCcccCccccccCCCCCCEEChHHhCC
Confidence 445799999987532 13576 999999999765
No 142
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=56.46 E-value=7.5 Score=27.55 Aligned_cols=33 Identities=24% Similarity=0.588 Sum_probs=24.3
Q ss_pred CCeeeeccccccCcCC--ccccc-CCceeccCcccc
Q 046177 54 RELLECPVCLNAMYPP--IHQCS-NGHTLCSGCKPR 86 (272)
Q Consensus 54 ~~~l~CpiC~~~l~~P--v~qC~-cGH~~C~~C~~~ 86 (272)
.+.-.|.+|...+..- -.-|. ||.+||..|...
T Consensus 19 ~~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~ 54 (84)
T 1z2q_A 19 EDAPACNGCGCVFTTTVRRHHCRNCGYVLCGDCSRH 54 (84)
T ss_dssp TTCCBCTTTCCBCCTTSCCEECTTTCCEECTGGGCC
T ss_pred CCCCCCcCcCCccccchhcccccCCCcEEChHHhCC
Confidence 3455899999987532 23576 999999999765
No 143
>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the cerebellum 3, disease mutation, DNA-binding, metal-binding, nucleus, polymorphism; NMR {Homo sapiens}
Probab=55.96 E-value=21 Score=26.93 Aligned_cols=52 Identities=15% Similarity=0.235 Sum_probs=34.1
Q ss_pred CCcccccCCCCceeccC-cHHhhhhcC-CCccccCCCCCCCCcccc-ChhHHHHHhhhcCC
Q 046177 115 LPCKYQSYGCMGIYPYY-SKLKHESQC-IFRPYNCPYAGSECTVMG-DIPYLVAHLKDDHK 172 (272)
Q Consensus 115 v~C~~~~~GC~~~~~~~-~~~~He~~C-~~~~~~CP~~~~~C~~~g-~~~~l~~Hl~~~H~ 172 (272)
+.|+. |...+... .|..|+..= .-.++.|+.. +|+... ....|..|+...+.
T Consensus 63 ~~C~~----C~~~f~~~~~l~~H~~~h~~~~~~~C~~~--~C~~~f~~~~~L~~H~~~h~~ 117 (155)
T 2rpc_A 63 EECPR----EGKSFKAKYKLVNHIRVHTGEKPFPCPFP--GCGKIFARSENLKIHKRTHTG 117 (155)
T ss_dssp TTCTT----SSCCCSSHHHHHHHTHHHHCCCSEECSCT--TTCCEESCHHHHHHHHTTTCS
T ss_pred cCCCC----cccccCCHHHHHHHHHhcCCCCcccCCcC--CCCCccCCHHHHHHHHHhhCC
Confidence 35654 77666543 567787632 3467899863 387766 56789999886554
No 144
>1x68_A FHL5 protein; four-and-A-half LIM protein 5, zinc finger domain, AN actin- interacting protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=55.73 E-value=8.6 Score=26.13 Aligned_cols=39 Identities=15% Similarity=0.335 Sum_probs=26.9
Q ss_pred CeeeeccccccCcCCcccccCCceeccCccccc-CCCCCC
Q 046177 55 ELLECPVCLNAMYPPIHQCSNGHTLCSGCKPRV-HNRCPT 93 (272)
Q Consensus 55 ~~l~CpiC~~~l~~Pv~qC~cGH~~C~~C~~~~-~~~CP~ 93 (272)
+=|.|..|...|....+.-..|.++|..|..+. ...|..
T Consensus 34 ~CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~f~~~C~~ 73 (76)
T 1x68_A 34 ECFNCGKCSVSLVGKGFLTQNKEIFCQKCGSGMDTDISGP 73 (76)
T ss_dssp GGCBCTTTCCBCSSSCEEEETTEEEETTTTCCCCCCSSSS
T ss_pred ccCChhhCCCcCCCCceEeECCEEECHHHhhhhhCCcCCC
Confidence 457899999888654333368899999998775 244543
No 145
>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=55.07 E-value=8.7 Score=25.21 Aligned_cols=51 Identities=18% Similarity=0.279 Sum_probs=32.2
Q ss_pred CCCcccccCCCCceeccC-cHHhhhhc-CCCccccCCCCCCCCcccc-ChhHHHHHhhhcCC
Q 046177 114 ELPCKYQSYGCMGIYPYY-SKLKHESQ-CIFRPYNCPYAGSECTVMG-DIPYLVAHLKDDHK 172 (272)
Q Consensus 114 ~v~C~~~~~GC~~~~~~~-~~~~He~~-C~~~~~~CP~~~~~C~~~g-~~~~l~~Hl~~~H~ 172 (272)
++.|+. |...+... .|..|+.. -.-.++.|+. |+... ....|..|++..+.
T Consensus 14 ~~~C~~----C~k~f~~~~~L~~H~~~h~~~~~~~C~~----C~~~f~~~~~L~~H~~~H~~ 67 (72)
T 1x6e_A 14 PYGCVE----CGKAFSRSSILVQHQRVHTGEKPYKCLE----CGKAFSQNSGLINHQRIHTS 67 (72)
T ss_dssp CEECSS----SCCEESSHHHHHHHHHGGGCSCCEECSS----SCCEESSHHHHHHHHHHHHS
T ss_pred CccCCC----CCCccCCHHHHHHHHHhcCCCCCeECCC----CCcccCCHHHHHHHHHhcCC
Confidence 345554 66655443 45667653 2346789987 77666 45789999876543
No 146
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=54.87 E-value=4.9 Score=32.08 Aligned_cols=45 Identities=13% Similarity=0.346 Sum_probs=35.3
Q ss_pred CCeeeeccccccCcCCcccccCCceeccCccccc-CCCCCCcccCCC
Q 046177 54 RELLECPVCLNAMYPPIHQCSNGHTLCSGCKPRV-HNRCPTCRHELG 99 (272)
Q Consensus 54 ~~~l~CpiC~~~l~~Pv~qC~cGH~~C~~C~~~~-~~~CP~Cr~~~~ 99 (272)
.+-|.|..|...|..-.+. ..|..+|..|..+. ...|..|..+|.
T Consensus 31 ~~CF~C~~C~~~L~~~~f~-~~g~~yC~~~y~~~f~~~C~~C~~~I~ 76 (169)
T 2rgt_A 31 SKCLKCSDCHVPLAERCFS-RGESVYCKDDFFKRFGTKCAACQLGIP 76 (169)
T ss_dssp TTTSBCTTTCCBCCSCCEE-SSSCEECHHHHHHHHSCBCTTTCCBCC
T ss_pred cccCccCCCCCcCCCCCcc-cCCeeeecccccccccccccccccccC
Confidence 3558899999988765454 68999999998765 578999988775
No 147
>2xjy_A Rhombotin-2; oncoprotein, T-cell leukemia, proto-oncogene, transcription, developmental protein; 2.40A {Homo sapiens} PDB: 2xjz_A
Probab=54.85 E-value=3.1 Score=31.56 Aligned_cols=45 Identities=20% Similarity=0.456 Sum_probs=34.6
Q ss_pred CCeeeeccccccCcC---CcccccCCceeccCccccc-CC--CCCCcccCCC
Q 046177 54 RELLECPVCLNAMYP---PIHQCSNGHTLCSGCKPRV-HN--RCPTCRHELG 99 (272)
Q Consensus 54 ~~~l~CpiC~~~l~~---Pv~qC~cGH~~C~~C~~~~-~~--~CP~Cr~~~~ 99 (272)
.+-|.|..|...|.. +.+. ..|..+|..|..+. .. .|..|..++.
T Consensus 27 ~~CF~C~~C~~~L~~~~~~~~~-~~g~~yC~~~y~~~~~~~~~C~~C~~~I~ 77 (131)
T 2xjy_A 27 EDCLSCDLCGCRLGEVGRRLYY-KLGRKLCRRDYLRLFGQDGLCASCDKRIR 77 (131)
T ss_dssp TTTCBCTTTCCBCSSTTCCEEE-ETTEEECHHHHHHHHCCCEECTTTCCEEC
T ss_pred HHHcccCcCCCccccCCCeEEE-ECCEEeecCchhhhCCCccChhhcCCccC
Confidence 355889999999853 4444 68999999998875 33 7999988774
No 148
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=54.74 E-value=8.3 Score=27.29 Aligned_cols=33 Identities=24% Similarity=0.541 Sum_probs=23.7
Q ss_pred CCeeeeccccccCcCC--ccccc-CCceeccCcccc
Q 046177 54 RELLECPVCLNAMYPP--IHQCS-NGHTLCSGCKPR 86 (272)
Q Consensus 54 ~~~l~CpiC~~~l~~P--v~qC~-cGH~~C~~C~~~ 86 (272)
.+.-.|.+|...+..- -.-|. ||.+||..|...
T Consensus 12 ~~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~ 47 (84)
T 1x4u_A 12 NNFGNCTGCSATFSVLKKRRSCSNCGNSFCSRCCSF 47 (84)
T ss_dssp CCCSSCSSSCCCCCSSSCCEECSSSCCEECTTTSCE
T ss_pred CCCCcCcCcCCccccchhhhhhcCCCcEEChhhcCC
Confidence 3445799999887432 23576 999999999664
No 149
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=54.55 E-value=7.9 Score=26.64 Aligned_cols=29 Identities=21% Similarity=0.567 Sum_probs=22.0
Q ss_pred eeccccccCcCC--ccccc-CCceeccCcccc
Q 046177 58 ECPVCLNAMYPP--IHQCS-NGHTLCSGCKPR 86 (272)
Q Consensus 58 ~CpiC~~~l~~P--v~qC~-cGH~~C~~C~~~ 86 (272)
.|.+|...+..- -.-|. ||.+||..|...
T Consensus 13 ~C~~C~~~F~~~~RrHHCR~CG~v~C~~Cs~~ 44 (73)
T 1vfy_A 13 ACMICSKKFSLLNRKHHCRSCGGVFCQEHSSN 44 (73)
T ss_dssp BCTTTCCBCBTTBCCEECTTTCCEECGGGSCE
T ss_pred cccCCCCccCCccccccCCCCCEEEcccccCC
Confidence 799999877532 23576 999999999754
No 150
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=54.37 E-value=6.7 Score=35.89 Aligned_cols=60 Identities=17% Similarity=0.314 Sum_probs=41.5
Q ss_pred CCeeeeccccccCcCCcccccCCceeccCccccc-------CCCCCCcccCCCc---ccchhHHHHhhhc
Q 046177 54 RELLECPVCLNAMYPPIHQCSNGHTLCSGCKPRV-------HNRCPTCRHELGN---IRCLALEKVAASL 113 (272)
Q Consensus 54 ~~~l~CpiC~~~l~~Pv~qC~cGH~~C~~C~~~~-------~~~CP~Cr~~~~~---~r~~~le~~~~~l 113 (272)
.-.|.||+=...|..|+.--.|.|+-|.+-..-+ ...||.|...+.. .-+..+.+++...
T Consensus 247 ~vSL~CPlS~~ri~~PvRg~~C~HlQCFDl~sfL~~~~~~~~W~CPIC~k~~~~~dL~ID~~~~~IL~~~ 316 (371)
T 3i2d_A 247 IMSLQCPISYTRMKYPSKSINCKHLQCFDALWFLHSQLQIPTWQCPVCQIDIALENLAISEFVDDILQNC 316 (371)
T ss_dssp EEESBCTTTSSBCSSEEEETTCCSSCCEEHHHHHHHHHHSCCCBCTTTCCBCCGGGEEEBHHHHHHHTTS
T ss_pred EEeecCCCccccccccCcCCcCCCcceECHHHHHHHhhcCCceeCCCCCcccCHHHeeEcHHHHHHHHhc
Confidence 4458999999999999877679999776542111 2589999887753 2344555565543
No 151
>2vrw_B P95VAV, VAV1, proto-oncogene VAV; lipoprotein, GTP-binding, metal-binding, phosphoprotein, exchange factor, RAC, GTPase, membrane domain; 1.85A {Mus musculus} PDB: 3bji_A 1f5x_A
Probab=53.99 E-value=6.8 Score=35.65 Aligned_cols=35 Identities=20% Similarity=0.298 Sum_probs=27.7
Q ss_pred CCeeeeccccccCcCC---ccccc-CCceeccCcccccC
Q 046177 54 RELLECPVCLNAMYPP---IHQCS-NGHTLCSGCKPRVH 88 (272)
Q Consensus 54 ~~~l~CpiC~~~l~~P---v~qC~-cGH~~C~~C~~~~~ 88 (272)
...-.|..|...+..- -++|. ||..+|+.|..++.
T Consensus 355 ~~~t~C~~C~~~~~g~~~qg~~C~~C~~~~h~~C~~~~~ 393 (406)
T 2vrw_B 355 EETTSCKACQMLLRGTFYQGYRCYRCRAPAHKECLGRVP 393 (406)
T ss_dssp SSCCBCTTTCCBCCSSSSCEEEETTTCCEECGGGGGGSC
T ss_pred CCCCCCccccchhceeCCCCCCCCCCcCccchhhhhhCC
Confidence 4556899999988643 34687 99999999999874
No 152
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=52.36 E-value=3.3 Score=27.86 Aligned_cols=37 Identities=16% Similarity=0.405 Sum_probs=20.7
Q ss_pred eeeeccccccCcCCcccccCCceeccCcccccCCCCC
Q 046177 56 LLECPVCLNAMYPPIHQCSNGHTLCSGCKPRVHNRCP 92 (272)
Q Consensus 56 ~l~CpiC~~~l~~Pv~qC~cGH~~C~~C~~~~~~~CP 92 (272)
=|.|..|...|..-.+.-..|..+|..|..+.-..|+
T Consensus 33 CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~~~~~~ 69 (72)
T 1x61_A 33 CFVCSTCRAQLRGQHFYAVERRAYCEGCYVATLESGP 69 (72)
T ss_dssp TCBCSSSCCBCTTSCEEESSSCEEEHHHHHHHHHTCS
T ss_pred CCcccccCCcCCcCcCEeeCCeEECHHHHHHHHccCC
Confidence 3667777776644322224667777777655433444
No 153
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=51.90 E-value=10 Score=27.16 Aligned_cols=32 Identities=22% Similarity=0.409 Sum_probs=23.6
Q ss_pred CeeeeccccccCcCC--ccccc-CCceeccCcccc
Q 046177 55 ELLECPVCLNAMYPP--IHQCS-NGHTLCSGCKPR 86 (272)
Q Consensus 55 ~~l~CpiC~~~l~~P--v~qC~-cGH~~C~~C~~~ 86 (272)
+.-.|.+|...+..- -.-|. ||.+||..|...
T Consensus 8 ~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~ 42 (88)
T 1wfk_A 8 MESRCYGCAVKFTLFKKEYGCKNCGRAFCNGCLSF 42 (88)
T ss_dssp CCSBCTTTCCBCCSSSCEEECSSSCCEEETTTSCE
T ss_pred cCCCCcCcCCcccCccccccCCCCCCEEChhHcCC
Confidence 444799999877532 23576 999999999765
No 154
>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET: DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A*
Probab=51.81 E-value=17 Score=25.95 Aligned_cols=8 Identities=25% Similarity=0.310 Sum_probs=3.5
Q ss_pred hHHHHHhh
Q 046177 161 PYLVAHLK 168 (272)
Q Consensus 161 ~~l~~Hl~ 168 (272)
..|..|+.
T Consensus 80 ~~l~~H~~ 87 (119)
T 2jp9_A 80 DHLKTHTR 87 (119)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 34444444
No 155
>1tf6_A Protein (transcription factor IIIA); complex (transcription regulation/DNA), RNA polymerase III, transcription initiation, zinc finger protein; HET: DNA; 3.10A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A
Probab=51.57 E-value=25 Score=27.63 Aligned_cols=111 Identities=15% Similarity=0.192 Sum_probs=58.7
Q ss_pred CCeeee--ccccccCcCCcccccCCceeccCcccccCCCC--CCcccCCCcccchh--HHHHhhhcCCCcccccCCCCce
Q 046177 54 RELLEC--PVCLNAMYPPIHQCSNGHTLCSGCKPRVHNRC--PTCRHELGNIRCLA--LEKVAASLELPCKYQSYGCMGI 127 (272)
Q Consensus 54 ~~~l~C--piC~~~l~~Pv~qC~cGH~~C~~C~~~~~~~C--P~Cr~~~~~~r~~~--le~~~~~l~v~C~~~~~GC~~~ 127 (272)
...+.| +.|...+...... -.|.-=. ...-...| +.|...+....++. +..-...-.+.|+. .+|+..
T Consensus 10 ~~~~~C~~~~C~~~f~~~~~L--~~H~~~h--~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~--~~C~~~ 83 (190)
T 1tf6_A 10 YKRYICSFADCGAAYNKNWKL--QAHLCKH--TGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKNFTCDS--DGCDLR 83 (190)
T ss_dssp CCCCBCSSTTTCCBCSSHHHH--HHHHHHH--HCCCSSCCSSTTCCCCCSSHHHHHHHHTTTTTCCCEECCS--SSCCCE
T ss_pred CcceeCCCCCCcchhCCHHHH--HHHHHhc--CCCCCccCCCCCCChhhCCHHHHHHHHHHccCCCceeCCC--CCCCCc
Confidence 455777 6787777654211 1121000 00112478 78987775422211 11111223456652 158877
Q ss_pred eccC-cHHhhhh-cC--CCccccCCCCCCCCcccc-ChhHHHHHhhhcCC
Q 046177 128 YPYY-SKLKHES-QC--IFRPYNCPYAGSECTVMG-DIPYLVAHLKDDHK 172 (272)
Q Consensus 128 ~~~~-~~~~He~-~C--~~~~~~CP~~~~~C~~~g-~~~~l~~Hl~~~H~ 172 (272)
+... .|..|+. .- .-.++.|+.. .|+... ....|..|+...+.
T Consensus 84 f~~~~~l~~H~~~~h~~~~~~~~C~~~--~C~k~f~~~~~L~~H~~~H~~ 131 (190)
T 1tf6_A 84 FTTKANMKKHFNRFHNIKICVYVCHFE--NCGKAFKKHNQLKVHQFSHTQ 131 (190)
T ss_dssp ESCHHHHHHHHHTTSSTTTSCCEECSS--SSCEECSSHHHHHHHHGGGSS
T ss_pred cCCHHHHHHHHHHhcCCCcceeeCCCC--CCccccCCHHHHHHHHHHhCC
Confidence 7554 5778873 32 3457888432 287766 56789999886554
No 156
>1x3c_A Zinc finger protein 292; DNA binding, nuclear protein, C2H2-type zinc finger, KIAA0530, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1
Probab=51.37 E-value=11 Score=26.25 Aligned_cols=29 Identities=34% Similarity=0.676 Sum_probs=22.3
Q ss_pred CccccCCCCCCCCccccC-hhHHHHHhhhcCC
Q 046177 142 FRPYNCPYAGSECTVMGD-IPYLVAHLKDDHK 172 (272)
Q Consensus 142 ~~~~~CP~~~~~C~~~g~-~~~l~~Hl~~~H~ 172 (272)
-+|+.|+..+ |+.... ...|..|++..|.
T Consensus 25 EKPYkC~~~~--CgKaFsr~s~L~~H~rriHT 54 (73)
T 1x3c_A 25 YRPYRCVHQG--CFAAFTIQQNLILHYQAVHK 54 (73)
T ss_dssp SCSCBCCSTT--CCCBCSSHHHHHHHHHHHSS
T ss_pred CCCeECCCCC--cChhHcCHHHHHHHhhhhCC
Confidence 3789998753 988884 5689999877775
No 157
>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1}
Probab=50.96 E-value=17 Score=26.60 Aligned_cols=54 Identities=19% Similarity=0.300 Sum_probs=39.2
Q ss_pred hhcCCCcccccCCCCceeccC-cHHhhhhcCCCccccCCCCCCCCcccc-ChhHHHHHhhhcCCC
Q 046177 111 ASLELPCKYQSYGCMGIYPYY-SKLKHESQCIFRPYNCPYAGSECTVMG-DIPYLVAHLKDDHKV 173 (272)
Q Consensus 111 ~~l~v~C~~~~~GC~~~~~~~-~~~~He~~C~~~~~~CP~~~~~C~~~g-~~~~l~~Hl~~~H~~ 173 (272)
..-++.|+. |...+... .|..|+..= -.|+.|+. |+... ....|..|+...|.+
T Consensus 71 ~~~~~~C~~----C~k~f~~~~~l~~H~~~H-~~~~~C~~----C~k~f~~~~~l~~H~~~h~~~ 126 (129)
T 2wbt_A 71 AISQFVCPL----CLMPFSSSVSLKQHIRYT-EHTKVCPV----CKKEFTSTDSALDHVCKKHNI 126 (129)
T ss_dssp HHCSEECTT----TCCEESSHHHHHHHHHHT-CCCCBCTT----TCCBCSSHHHHHHHHHHTTCC
T ss_pred CCCCeECCC----CCcccCCHhHHHHHHHHC-CCCCCCCC----CCcccCCHHHHHHHHHHHCCc
Confidence 345677875 88777654 567887754 57889987 77666 456899999988875
No 158
>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding, transcription, metal-binding, DNA, protein, nucleus, activator; 1.70A {Mus musculus} PDB: 2wbu_A
Probab=50.59 E-value=8.1 Score=26.18 Aligned_cols=43 Identities=23% Similarity=0.386 Sum_probs=24.9
Q ss_pred CCCceeccC-cHHhhhhc-CCCccccCCCCCCCCcccc-ChhHHHHHhhh
Q 046177 123 GCMGIYPYY-SKLKHESQ-CIFRPYNCPYAGSECTVMG-DIPYLVAHLKD 169 (272)
Q Consensus 123 GC~~~~~~~-~~~~He~~-C~~~~~~CP~~~~~C~~~g-~~~~l~~Hl~~ 169 (272)
+|...+... .+..|+.. -.-.++.|+. |+... ....|..|++.
T Consensus 42 ~C~~~f~~~~~l~~H~~~h~~~~~~~C~~----C~~~f~~~~~l~~H~~~ 87 (89)
T 2wbs_A 42 GCGWKFARSDELTRHYRKHTGHRPFQCQK----CDRAFSRSDHLALHMKR 87 (89)
T ss_dssp TTCCEESSHHHHHHHHHHHHCCCCEECSS----SSCEESSHHHHHHHGGG
T ss_pred CCCCccCCHHHHHHHHHHcCCCCCccCCC----CCcccCCHHHHHHHHHh
Confidence 466665443 45566542 2335677876 66655 45677777653
No 159
>2js4_A UPF0434 protein BB2007; NESG, northeast structural genomics consortium, beta, PSI-2, protein structure initiative; NMR {Bordetella bronchiseptica RB50}
Probab=49.83 E-value=6.5 Score=27.17 Aligned_cols=31 Identities=23% Similarity=0.540 Sum_probs=20.4
Q ss_pred cCCCCeeeeccccccCcCCcccccCCceeccCcc
Q 046177 51 SSVRELLECPVCLNAMYPPIHQCSNGHTLCSGCK 84 (272)
Q Consensus 51 ~~~~~~l~CpiC~~~l~~Pv~qC~cGH~~C~~C~ 84 (272)
..+.+.|.||+|...|.--. .-|-.+|..|.
T Consensus 3 ~~LL~iL~CP~ck~~L~~~~---~~~~LiC~~cg 33 (70)
T 2js4_A 3 SRLLDILVCPVCKGRLEFQR---AQAELVCNADR 33 (70)
T ss_dssp CCCCCCCBCTTTCCBEEEET---TTTEEEETTTT
T ss_pred hHHhhheECCCCCCcCEEeC---CCCEEEcCCCC
Confidence 45778899999999765321 24556665553
No 160
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=49.68 E-value=8.8 Score=34.97 Aligned_cols=59 Identities=19% Similarity=0.285 Sum_probs=41.4
Q ss_pred CCeeeeccccccCcCCcccccCCceeccCccccc-------CCCCCCcccCCCc---ccchhHHHHhhh
Q 046177 54 RELLECPVCLNAMYPPIHQCSNGHTLCSGCKPRV-------HNRCPTCRHELGN---IRCLALEKVAAS 112 (272)
Q Consensus 54 ~~~l~CpiC~~~l~~Pv~qC~cGH~~C~~C~~~~-------~~~CP~Cr~~~~~---~r~~~le~~~~~ 112 (272)
.-.|.||+=...+..|+.--.|.|+-|.+-..-+ ...||.|...+.. .-+..+.+++..
T Consensus 213 ~vSL~CPlS~~ri~~P~Rg~~C~HlqCFDl~sfL~~~~~~~~W~CPiC~k~~~~~dL~ID~~~~~IL~~ 281 (360)
T 4fo9_A 213 RVSLMCPLGKMRLTIPCRAVTCTHLQCFDAALYLQMNEKKPTWICPVCDKKAAYESLILDGLFMEILND 281 (360)
T ss_dssp EEESBCTTTCSBCSSEEEETTCCCCCCEEHHHHHHHHHHSCCCBCTTTCSBCCGGGEEEBHHHHHHHTT
T ss_pred EEeeeCCCccceeccCCcCCCCCCCccCCHHHHHHHHhhCCCeECCCCCcccCHHHeEEcHHHHHHHHh
Confidence 4467899999999999877679999776542211 2589999998753 234455555554
No 161
>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=49.16 E-value=24 Score=22.94 Aligned_cols=45 Identities=20% Similarity=0.352 Sum_probs=28.2
Q ss_pred CCceecc-CcHHhhhhc-CCCccccCCCCCCCCcccc-ChhHHHHHhhhcCC
Q 046177 124 CMGIYPY-YSKLKHESQ-CIFRPYNCPYAGSECTVMG-DIPYLVAHLKDDHK 172 (272)
Q Consensus 124 C~~~~~~-~~~~~He~~-C~~~~~~CP~~~~~C~~~g-~~~~l~~Hl~~~H~ 172 (272)
|...+.. ..+..|+.. -.-+++.|+. |+... ....|..|++..+.
T Consensus 23 C~k~f~~~~~l~~H~~~H~~~~~~~C~~----C~k~f~~~~~L~~H~~~H~~ 70 (74)
T 2lce_A 23 CQASFRYKGNLASHKTVHTGEKPYRCNI----CGAQFNRPANLKTHTRIHSG 70 (74)
T ss_dssp SSCCBSCHHHHHHHHHHHCCCCSEECTT----TCCEESCHHHHHHHHHHHCC
T ss_pred CCceeCCHHHHHHHHHHcCCCCCEECCC----CCchhCCHHHHHHHHHhcCC
Confidence 5555543 345566652 2346789986 77666 45789999876443
No 162
>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=48.79 E-value=25 Score=23.36 Aligned_cols=53 Identities=13% Similarity=0.083 Sum_probs=33.8
Q ss_pred CCcccccCCCCceeccC-cHHhhhh-cCCC----ccccCCCCCCCCcccc-ChhHHHHHhhhcCCCCC
Q 046177 115 LPCKYQSYGCMGIYPYY-SKLKHES-QCIF----RPYNCPYAGSECTVMG-DIPYLVAHLKDDHKVDM 175 (272)
Q Consensus 115 v~C~~~~~GC~~~~~~~-~~~~He~-~C~~----~~~~CP~~~~~C~~~g-~~~~l~~Hl~~~H~~~~ 175 (272)
+.|.. |...+... .|..|+. .-.- .++.|+. |+... ....|..|+...|....
T Consensus 16 ~~C~~----C~~~f~~~~~l~~H~~~~~~~~~~~~~~~C~~----C~~~f~~~~~L~~H~~~h~~~~~ 75 (86)
T 1x6h_A 16 YACSH----CDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSK----CGKTFTRRNTMARHADNCAGPDG 75 (86)
T ss_dssp EECSS----SSCEESSHHHHHHHHHHTTCSSCCCCCEECSS----SCCEESCHHHHHHHHHHCCCCCS
T ss_pred CcCCC----CCCccCCHHHHHHHHHHhcCCcCCCcceECCC----CCChhCCHHHHHHHHHHccCCCC
Confidence 45554 66655443 4567764 2222 5788986 77666 56789999988776543
No 163
>2hf1_A Tetraacyldisaccharide-1-P 4-kinase; LPXK, lipid A biosynthes structural genomics, PSI-2, protein structure initiative; 1.90A {Chromobacterium violaceum} SCOP: b.171.1.1
Probab=47.76 E-value=6.1 Score=27.15 Aligned_cols=31 Identities=26% Similarity=0.607 Sum_probs=19.9
Q ss_pred cCCCCeeeeccccccCcCCcccccCCceeccCcc
Q 046177 51 SSVRELLECPVCLNAMYPPIHQCSNGHTLCSGCK 84 (272)
Q Consensus 51 ~~~~~~l~CpiC~~~l~~Pv~qC~cGH~~C~~C~ 84 (272)
..+.+.|.||+|...|.--. .-|-.+|..|.
T Consensus 3 ~~LL~iL~CP~ck~~L~~~~---~~~~LiC~~cg 33 (68)
T 2hf1_A 3 AKFLEILVCPLCKGPLVFDK---SKDELICKGDR 33 (68)
T ss_dssp CCCEEECBCTTTCCBCEEET---TTTEEEETTTT
T ss_pred hHHhhheECCCCCCcCeEeC---CCCEEEcCCCC
Confidence 35678899999998765321 24555555553
No 164
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=47.74 E-value=9 Score=32.07 Aligned_cols=32 Identities=22% Similarity=0.580 Sum_probs=23.8
Q ss_pred CeeeeccccccCcCC--ccccc-CCceeccCcccc
Q 046177 55 ELLECPVCLNAMYPP--IHQCS-NGHTLCSGCKPR 86 (272)
Q Consensus 55 ~~l~CpiC~~~l~~P--v~qC~-cGH~~C~~C~~~ 86 (272)
+.-.|++|...+..- -.-|. ||++||..|...
T Consensus 160 ~~~~C~~C~~~F~~~~rrhhCr~CG~v~C~~Cs~~ 194 (220)
T 1dvp_A 160 DGRVCHRCRVEFTFTNRKHHCRNCGQVFCGQCTAK 194 (220)
T ss_dssp CCSBCTTTCCBCCSSSCCEECTTTCCEECSTTSCE
T ss_pred CCCccCCCCCccCCcccccccCCcCCEEChHHhCC
Confidence 345899999887532 23576 999999999765
No 165
>1wd2_A Ariadne-1 protein homolog; ring, IBR, triad, zinc finger, ligase; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=47.35 E-value=8.6 Score=25.58 Aligned_cols=36 Identities=28% Similarity=0.658 Sum_probs=20.5
Q ss_pred eeeccccccCcCCcccccCCceeccC--cccccCCCCCCcccCC
Q 046177 57 LECPVCLNAMYPPIHQCSNGHTLCSG--CKPRVHNRCPTCRHEL 98 (272)
Q Consensus 57 l~CpiC~~~l~~Pv~qC~cGH~~C~~--C~~~~~~~CP~Cr~~~ 98 (272)
-.||-|..++... . .|.|+.|.. |.... |=.|..+.
T Consensus 7 k~CP~C~~~Iek~--~-GCnhmtC~~~~C~~~F---Cw~C~~~~ 44 (60)
T 1wd2_A 7 KECPKCHVTIEKD--G-GCNHMVCRNQNCKAEF---CWVCLGPW 44 (60)
T ss_dssp CCCTTTCCCCSSC--C-SCCSSSCCSSGGGSCC---SSSSCSCS
T ss_pred eECcCCCCeeEeC--C-CCCcEEECCCCcCCEE---eeCcCCCc
Confidence 3699999887653 1 355555555 54332 44454443
No 166
>1tf6_A Protein (transcription factor IIIA); complex (transcription regulation/DNA), RNA polymerase III, transcription initiation, zinc finger protein; HET: DNA; 3.10A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A
Probab=47.15 E-value=20 Score=28.15 Aligned_cols=44 Identities=23% Similarity=0.236 Sum_probs=21.7
Q ss_pred CCceeccC-cHHhhhhc-CCCccccCCCCCCCCcccc-ChhHHHHHhhh
Q 046177 124 CMGIYPYY-SKLKHESQ-CIFRPYNCPYAGSECTVMG-DIPYLVAHLKD 169 (272)
Q Consensus 124 C~~~~~~~-~~~~He~~-C~~~~~~CP~~~~~C~~~g-~~~~l~~Hl~~ 169 (272)
|+..+... .|..|+.. -.-+++.|+.. +|+... ....|..|++.
T Consensus 112 C~k~f~~~~~L~~H~~~H~~~~~~~C~~~--~C~k~F~~~~~L~~H~~~ 158 (190)
T 1tf6_A 112 CGKAFKKHNQLKVHQFSHTQQLPYECPHE--GCDKRFSLPSRLKRHEKV 158 (190)
T ss_dssp SCEECSSHHHHHHHHGGGSSSCSSBCCSS--SCCCBCSSHHHHHHHHTS
T ss_pred CccccCCHHHHHHHHHHhCCCCCccCCCC--CCCchhcCHHHHHHHHHH
Confidence 65555433 34556542 22345666542 255544 33566666654
No 167
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=46.74 E-value=8 Score=34.48 Aligned_cols=44 Identities=20% Similarity=0.446 Sum_probs=30.9
Q ss_pred CCeeeeccccccCcCCcccc---cCC--ceeccCccccc---CCCCCCcccC
Q 046177 54 RELLECPVCLNAMYPPIHQC---SNG--HTLCSGCKPRV---HNRCPTCRHE 97 (272)
Q Consensus 54 ~~~l~CpiC~~~l~~Pv~qC---~cG--H~~C~~C~~~~---~~~CP~Cr~~ 97 (272)
...-.||+|.....--+..= .-| +..|+-|-..| ...||.|...
T Consensus 180 ~~~~~CPvCGs~P~~s~l~~~g~~~G~R~l~Cs~C~t~W~~~R~~C~~Cg~~ 231 (309)
T 2fiy_A 180 ESRTLCPACGSPPMAGMIRQGGKETGLRYLSCSLCACEWHYVRIKCSHCEES 231 (309)
T ss_dssp TTCSSCTTTCCCEEEEEEEC----CCEEEEEETTTCCEEECCTTSCSSSCCC
T ss_pred ccCCCCCCCCCcCceeEEeecCCCCCcEEEEeCCCCCEEeecCcCCcCCCCC
Confidence 44568999999765443320 245 57999999998 3689999764
No 168
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=46.61 E-value=10 Score=27.26 Aligned_cols=33 Identities=27% Similarity=0.547 Sum_probs=23.7
Q ss_pred CeeeeccccccCcCC--ccccc-CCceeccCccccc
Q 046177 55 ELLECPVCLNAMYPP--IHQCS-NGHTLCSGCKPRV 87 (272)
Q Consensus 55 ~~l~CpiC~~~l~~P--v~qC~-cGH~~C~~C~~~~ 87 (272)
+.-.|.+|...+..- -.-|. ||.+||..|....
T Consensus 19 ~~~~C~~C~~~F~~~~RrhhCr~CG~v~C~~Cs~~~ 54 (90)
T 3t7l_A 19 EAPNCMNCQVKFTFTKRRHHCRACGKVFCGVCCNRK 54 (90)
T ss_dssp GCCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCEE
T ss_pred cCCcCcCCCCcccchhhCccccCCCCEECCcccCCe
Confidence 345799999876421 23576 9999999997653
No 169
>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET: DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A*
Probab=46.43 E-value=17 Score=25.90 Aligned_cols=75 Identities=17% Similarity=0.341 Sum_probs=45.0
Q ss_pred CCCC--CcccCCCcccch--hHHHHhhhcCCCcccccCCCCceeccC-cHHhhhhc-CCCccccCCCCCCCCcccc-Chh
Q 046177 89 NRCP--TCRHELGNIRCL--ALEKVAASLELPCKYQSYGCMGIYPYY-SKLKHESQ-CIFRPYNCPYAGSECTVMG-DIP 161 (272)
Q Consensus 89 ~~CP--~Cr~~~~~~r~~--~le~~~~~l~v~C~~~~~GC~~~~~~~-~~~~He~~-C~~~~~~CP~~~~~C~~~g-~~~ 161 (272)
..|+ .|...+....++ -+..-...-.+.|+. |...+... .+..|+.. -.-.++.|+.. .|+... ...
T Consensus 37 ~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~----C~~~f~~~~~l~~H~~~h~~~~~~~C~~~--~C~~~f~~~~ 110 (119)
T 2jp9_A 37 YQCDFKDCERRFSRSDQLKRHQRRHTGVKPFQCKT----CQRKFSRSDHLKTHTRTHTGEKPFSCRWP--SCQKKFARSD 110 (119)
T ss_dssp EECCSTTCCCEESSHHHHHHHHHHHHCCCCEECTT----TCCEESCHHHHHHHHHHHHTCCCEECCST--TCCCEESSHH
T ss_pred ccCCCCCCcCccCCHHHHHHHHHHcCCCCCccCCc----cCchhCCHHHHHHHHHHhcCCCCeeCCCC--CCccccCCHH
Confidence 3687 687766542221 122223344577875 88877654 56678763 23467889431 287776 457
Q ss_pred HHHHHhhh
Q 046177 162 YLVAHLKD 169 (272)
Q Consensus 162 ~l~~Hl~~ 169 (272)
.|..|++.
T Consensus 111 ~L~~H~~~ 118 (119)
T 2jp9_A 111 ELVRHHNM 118 (119)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHhc
Confidence 88999763
No 170
>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=45.93 E-value=23 Score=23.24 Aligned_cols=48 Identities=23% Similarity=0.327 Sum_probs=29.5
Q ss_pred CCCceeccC-cHHhhhh-cC-CCccccCCCCCCCCcccc-ChhHHHHHhhhcCC
Q 046177 123 GCMGIYPYY-SKLKHES-QC-IFRPYNCPYAGSECTVMG-DIPYLVAHLKDDHK 172 (272)
Q Consensus 123 GC~~~~~~~-~~~~He~-~C-~~~~~~CP~~~~~C~~~g-~~~~l~~Hl~~~H~ 172 (272)
+|...+... .|..|+. .- .-.++.|+.. +|+... ....|..|+...+.
T Consensus 14 ~C~~~f~~~~~L~~H~~~~H~~~~~~~C~~~--~C~k~f~~~~~L~~H~~~H~~ 65 (79)
T 2dlk_A 14 GCGRIFSNRQYLNHHKKYQHIHQKSFSCPEP--ACGKSFNFKKHLKEHMKLHSD 65 (79)
T ss_dssp TTCCEESSHHHHHHHHHHGGGSCCCEECSCT--TTCCEESSHHHHHHHHHHHHT
T ss_pred CCcCccCCHHHHHHHHHHHhCCCCCeECCCC--CCcCccCCHHHHHHHHHHhCC
Confidence 576666543 4566765 22 3467888763 377665 45688888875443
No 171
>1rut_X Flinc4, fusion protein of LMO4 protein and LIM domain- binding protein 1; B-tandem zipper, protein binding; 1.30A {Mus musculus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 2dfy_X 2xjz_I 2xjy_B
Probab=45.81 E-value=2.6 Score=34.41 Aligned_cols=44 Identities=23% Similarity=0.503 Sum_probs=34.6
Q ss_pred CeeeeccccccCcC---CcccccCCceeccCccccc-CC--CCCCcccCCC
Q 046177 55 ELLECPVCLNAMYP---PIHQCSNGHTLCSGCKPRV-HN--RCPTCRHELG 99 (272)
Q Consensus 55 ~~l~CpiC~~~l~~---Pv~qC~cGH~~C~~C~~~~-~~--~CP~Cr~~~~ 99 (272)
+-|.|..|...|.. +.+. ..|..+|..|..+. .. .|..|..++.
T Consensus 31 ~CF~C~~C~~~L~~~g~~~~~-~~g~~yC~~cy~~~~~~~~~C~~C~~~I~ 80 (188)
T 1rut_X 31 RCLKCSSCQAQLGDIGTSSYT-KSGMILCRNDYIRLFGNSGACSACGQSIP 80 (188)
T ss_dssp GGCBCTTTCCBHHHHCSEEEE-ETTEEECHHHHHHHHSCCEECTTTCCEEC
T ss_pred cCcccCCCCcccccCCceEEE-eCCccccccccccccccCCccccCCCccc
Confidence 55889999999874 5444 68999999998775 23 5999998875
No 172
>2kpi_A Uncharacterized protein SCO3027; zinc finger, PSI-2, NESG, all beta, structural genomics, protein structure initiative; NMR {Streptomyces coelicolor}
Probab=45.58 E-value=8.4 Score=25.34 Aligned_cols=31 Identities=23% Similarity=0.769 Sum_probs=21.1
Q ss_pred cccCCCCeeeeccccccCcCCcccccCCceecc--Ccc
Q 046177 49 VSSSVRELLECPVCLNAMYPPIHQCSNGHTLCS--GCK 84 (272)
Q Consensus 49 ~~~~~~~~l~CpiC~~~l~~Pv~qC~cGH~~C~--~C~ 84 (272)
+...+.+.|.||+|...|.- . -|..+|. .|.
T Consensus 3 ~d~~lL~iL~CP~c~~~L~~---~--~~~L~C~~~~c~ 35 (56)
T 2kpi_A 3 LEAGLLEILACPACHAPLEE---R--DAELICTGQDCG 35 (56)
T ss_dssp CCCSCTTSCCCSSSCSCEEE---E--TTEEEECSSSCC
T ss_pred CCHHHHhheeCCCCCCccee---c--CCEEEcCCcCCC
Confidence 34567889999999997642 1 1666666 553
No 173
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=45.13 E-value=11 Score=28.25 Aligned_cols=24 Identities=38% Similarity=0.886 Sum_probs=16.6
Q ss_pred ccc-CCceeccCccccc--CCCCCCcccCCC
Q 046177 72 QCS-NGHTLCSGCKPRV--HNRCPTCRHELG 99 (272)
Q Consensus 72 qC~-cGH~~C~~C~~~~--~~~CP~Cr~~~~ 99 (272)
.|. ||..| ...+ ...||.|+....
T Consensus 69 ~C~~CG~~F----~~~~~kPsrCP~CkSe~I 95 (105)
T 2gmg_A 69 QCRKCGFVF----KAEINIPSRCPKCKSEWI 95 (105)
T ss_dssp BBTTTCCBC----CCCSSCCSSCSSSCCCCB
T ss_pred ChhhCcCee----cccCCCCCCCcCCCCCcc
Confidence 565 99999 2233 368999998643
No 174
>2pk7_A Uncharacterized protein; NESG, PLR1, putative tetraacyldisaccharide-1-P 4-kinase, Q4K structural genomics, PSI-2; 2.20A {Pseudomonas fluorescens} SCOP: b.171.1.1
Probab=45.04 E-value=6.5 Score=27.08 Aligned_cols=31 Identities=16% Similarity=0.531 Sum_probs=19.7
Q ss_pred cCCCCeeeeccccccCcCCcccccCCceeccCcc
Q 046177 51 SSVRELLECPVCLNAMYPPIHQCSNGHTLCSGCK 84 (272)
Q Consensus 51 ~~~~~~l~CpiC~~~l~~Pv~qC~cGH~~C~~C~ 84 (272)
..+.+.|.||+|...|.--. .-|-.+|..|.
T Consensus 3 ~~LLeiL~CP~ck~~L~~~~---~~~~LiC~~cg 33 (69)
T 2pk7_A 3 TKLLDILACPICKGPLKLSA---DKTELISKGAG 33 (69)
T ss_dssp CCGGGTCCCTTTCCCCEECT---TSSEEEETTTT
T ss_pred hHHHhheeCCCCCCcCeEeC---CCCEEEcCCCC
Confidence 34667889999998775321 24555555553
No 175
>2eln_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=44.81 E-value=19 Score=21.17 Aligned_cols=25 Identities=36% Similarity=0.437 Sum_probs=18.2
Q ss_pred ccccCCCCCCCCcccc-ChhHHHHHhhh
Q 046177 143 RPYNCPYAGSECTVMG-DIPYLVAHLKD 169 (272)
Q Consensus 143 ~~~~CP~~~~~C~~~g-~~~~l~~Hl~~ 169 (272)
+|+.|+.. .|+... ....|..|++.
T Consensus 8 kp~~C~~~--~C~k~F~~~~~L~~H~r~ 33 (38)
T 2eln_A 8 ILLKCPTD--GCDYSTPDKYKLQAHLKV 33 (38)
T ss_dssp CCEECSSS--SCCCEESCHHHHHHHHHH
T ss_pred CCCCCCCC--CCCCccCCHHHHHHHHHh
Confidence 57889853 388876 45688899765
No 176
>2a25_A Ubiquitin ligase SIAH1; protein-peptide complex, ligase; 2.20A {Homo sapiens} PDB: 2an6_A 1k2f_A
Probab=44.18 E-value=8.5 Score=31.71 Aligned_cols=46 Identities=13% Similarity=0.147 Sum_probs=21.1
Q ss_pred cccCCCcccchhHHHHhhhcCCCcccccCCCCceeccCcHHhhhhc
Q 046177 94 CRHELGNIRCLALEKVAASLELPCKYQSYGCMGIYPYYSKLKHESQ 139 (272)
Q Consensus 94 Cr~~~~~~r~~~le~~~~~l~v~C~~~~~GC~~~~~~~~~~~He~~ 139 (272)
|...+....-..-|+...-.+..||....+|.|.+.+.++..|...
T Consensus 16 C~~~~~y~~~~~He~~C~f~p~~Cp~~g~~C~~~G~~~~l~~H~~~ 61 (193)
T 2a25_A 16 CEITLPHTEKADHEELCEFRPYSCPCPGASCKWQGSLDAVMPHLMH 61 (193)
T ss_dssp --------------------CEECCCC--CCCCEECSTTHHHHHHH
T ss_pred CCcccccccccchhhcCCCCCccCCCCCCCCcCCCCHHHHHHHHHH
Confidence 5555554444556677777788899854459999999999999875
No 177
>1zw8_A Zinc-responsive transcriptional regulator ZAP1; interacting C2H2 zinc fingers, beta-BETA-alpha, solution structure; NMR {Saccharomyces cerevisiae}
Probab=43.31 E-value=25 Score=23.26 Aligned_cols=53 Identities=25% Similarity=0.560 Sum_probs=32.7
Q ss_pred CCcccccCCCCceeccC-cHHhhhh----cCC----CccccCCCCCCCCcccc-ChhHHHHHhhhcC
Q 046177 115 LPCKYQSYGCMGIYPYY-SKLKHES----QCI----FRPYNCPYAGSECTVMG-DIPYLVAHLKDDH 171 (272)
Q Consensus 115 v~C~~~~~GC~~~~~~~-~~~~He~----~C~----~~~~~CP~~~~~C~~~g-~~~~l~~Hl~~~H 171 (272)
+.|.. .+|...+.-. ++..|.. .-. -.++.|.-. +|++.+ ....|..|++.+|
T Consensus 2 l~C~W--~~C~~~f~~~~~l~~Hv~~~Hv~~~~~~~~~~~~C~W~--~C~~~~~~~~~L~~Hir~~H 64 (64)
T 1zw8_A 2 LKCKW--KECPESASSLFDLQRHLLKDHVSQDFKHPMEPLACNWE--DCDFLGDDTASIVNHINAQH 64 (64)
T ss_dssp CCCCC--TTCCCCCSSHHHHHHHHHHHSCCCCCCCSSCCEECCCS--SCCCEESSHHHHHHHHHHHC
T ss_pred CeEee--CCCCCcCCCHHHHHHHHHhhccCcccCCCCCCCEeeCC--CCcCCCCChHHHHhhccccC
Confidence 34555 3577655443 3556653 111 126778754 488877 5678999999877
No 178
>2epa_A Krueppel-like factor 10; transforming growth factor-beta-inducible early growth response protein 1, TGFB-inducible early growth response protein 1; NMR {Homo sapiens}
Probab=42.88 E-value=25 Score=22.71 Aligned_cols=50 Identities=20% Similarity=0.301 Sum_probs=32.0
Q ss_pred CCcccccCCCCceeccC-cHHhhhh-cCCCccccCCCCCCCCcccc-ChhHHHHHhh
Q 046177 115 LPCKYQSYGCMGIYPYY-SKLKHES-QCIFRPYNCPYAGSECTVMG-DIPYLVAHLK 168 (272)
Q Consensus 115 v~C~~~~~GC~~~~~~~-~~~~He~-~C~~~~~~CP~~~~~C~~~g-~~~~l~~Hl~ 168 (272)
+.|+. .||...+... .|..|+. --.-+++.|+.. .|+... ....|..|++
T Consensus 18 ~~C~~--~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~~--~C~k~f~~~~~l~~H~~ 70 (72)
T 2epa_A 18 HICSH--PGCGKTYFKSSHLKAHTRTHTGEKPFSCSWK--GCERRFARSDELSRHRR 70 (72)
T ss_dssp EECSS--TTTCCEESSHHHHHHHHHHHSSSCSEECCCT--TCCCEESSHHHHHHHTT
T ss_pred eeCCC--CCCccccCCHHHHHHHHHhcCCCCCccCCCC--CCCcccCCHHHHHhHhh
Confidence 45653 4687776543 5667765 344578899753 377766 4567888864
No 179
>3pwf_A Rubrerythrin; non heme iron peroxidases, oxidative stress, oxidoreductase; 1.64A {Pyrococcus furiosus} PDB: 3mps_A 3pza_A 3qvd_A 1nnq_A 2hr5_A
Probab=42.87 E-value=12 Score=30.19 Aligned_cols=10 Identities=30% Similarity=0.843 Sum_probs=7.2
Q ss_pred CCCCCcccCC
Q 046177 89 NRCPTCRHEL 98 (272)
Q Consensus 89 ~~CP~Cr~~~ 98 (272)
..||.|..+-
T Consensus 154 ~~CP~Cg~~~ 163 (170)
T 3pwf_A 154 EYCPVCGAPK 163 (170)
T ss_dssp SBCTTTCCBG
T ss_pred CCCCCCCCCH
Confidence 4789987653
No 180
>1ubd_C Protein (YY1 zinc finger domain); transcription initiation, initiator element, zinc finger protein, DNA- protein recognition; HET: DNA; 2.50A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A*
Probab=42.81 E-value=24 Score=25.45 Aligned_cols=75 Identities=16% Similarity=0.266 Sum_probs=46.4
Q ss_pred CCC--CcccCCCcccchhHHHHh---hhcCCCcccccCCCCceeccC-cHHhhhhcC-CCccccCCCCCCCCcccc-Chh
Q 046177 90 RCP--TCRHELGNIRCLALEKVA---ASLELPCKYQSYGCMGIYPYY-SKLKHESQC-IFRPYNCPYAGSECTVMG-DIP 161 (272)
Q Consensus 90 ~CP--~Cr~~~~~~r~~~le~~~---~~l~v~C~~~~~GC~~~~~~~-~~~~He~~C-~~~~~~CP~~~~~C~~~g-~~~ 161 (272)
.|| .|...+....+ |.+-+ ..-.+.|+. |...+... .+..|+..- .-.++.|+.. .|+... ...
T Consensus 7 ~C~~~~C~~~f~~~~~--l~~H~~~h~~~~~~C~~----C~~~f~~~~~l~~H~~~h~~~~~~~C~~~--~C~~~f~~~~ 78 (124)
T 1ubd_C 7 ACPHKGCTKMFRDNSA--MRKHLHTHGPRVHVCAE----CGKAFVESSKLKRHQLVHTGEKPFQCTFE--GCGKRFSLDF 78 (124)
T ss_dssp ECCSTTCCCEESSHHH--HHHHHGGGSCCCEECTT----TCCEESSHHHHHHHGGGTSCCCCEECCST--TCCCEESCHH
T ss_pred cCCCCCCcCccCCHHH--HHHHHHHcCCCCeECCC----CCchhCCHHHHHHHHHHcCCCCCeeCCCC--CCcCccCCHH
Confidence 588 78776654222 22211 233456764 88777554 577888743 3467889853 387766 557
Q ss_pred HHHHHhhhcCC
Q 046177 162 YLVAHLKDDHK 172 (272)
Q Consensus 162 ~l~~Hl~~~H~ 172 (272)
.|..|+...+.
T Consensus 79 ~l~~H~~~h~~ 89 (124)
T 1ubd_C 79 NLRTHVRIHTG 89 (124)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHHhCC
Confidence 89999876554
No 181
>1x4w_A Hypothetical protein FLJ13222; ZF-AN1 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=42.53 E-value=12 Score=25.70 Aligned_cols=40 Identities=15% Similarity=0.275 Sum_probs=30.2
Q ss_pred eeeccccccCcCCc---ccccCCceeccCcccccCCCCCCccc
Q 046177 57 LECPVCLNAMYPPI---HQCSNGHTLCSGCKPRVHNRCPTCRH 96 (272)
Q Consensus 57 l~CpiC~~~l~~Pv---~qC~cGH~~C~~C~~~~~~~CP~Cr~ 96 (272)
-.|..|..-+.-+- +.|.||.+||..=+..-...|+..-.
T Consensus 16 ~rC~~C~kk~gL~~~egf~CrCg~~FC~~HRy~e~H~C~fDyk 58 (67)
T 1x4w_A 16 RRCFQCQTKLELVQQELGSCRCGYVFCMLHRLPEQHDCTFDHM 58 (67)
T ss_dssp TBCSSSCCBCCHHHHHHHCCSSSCCCCTTTCSTGGGTCSSCSS
T ss_pred CcchhhCCeecccccCceEecCCCEehhccCCccccCCccccc
Confidence 47999999888762 79999999999876554446765543
No 182
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=41.90 E-value=12 Score=28.55 Aligned_cols=42 Identities=19% Similarity=0.476 Sum_probs=27.2
Q ss_pred CeeeeccccccCcCC--ccccc-CCceeccCccccc---CCCCCCccc
Q 046177 55 ELLECPVCLNAMYPP--IHQCS-NGHTLCSGCKPRV---HNRCPTCRH 96 (272)
Q Consensus 55 ~~l~CpiC~~~l~~P--v~qC~-cGH~~C~~C~~~~---~~~CP~Cr~ 96 (272)
+...|..|...+..- -.-|. ||.+||..|.... ...|-.|-.
T Consensus 18 ~~~~C~~C~~~Fs~~~RkHHCR~CG~ifC~~Cs~~~~~~vRVC~~C~~ 65 (120)
T 1y02_A 18 LEPSCKSCGAHFANTARKQTCLDCKKNFCMTCSSQVGNGPRLCLLCQR 65 (120)
T ss_dssp --CCCTTTCCCCSSGGGCEECTTTCCEECGGGEEC----CCEEHHHHH
T ss_pred ccCcccCcCCccccccccccCCCCCCeeCHHHhCCCCCCceECHHHHH
Confidence 335799999987543 13566 9999999997653 234555543
No 183
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=40.82 E-value=13 Score=31.36 Aligned_cols=30 Identities=27% Similarity=0.654 Sum_probs=22.6
Q ss_pred eeeccccccCcCC--ccccc-CCceeccCcccc
Q 046177 57 LECPVCLNAMYPP--IHQCS-NGHTLCSGCKPR 86 (272)
Q Consensus 57 l~CpiC~~~l~~P--v~qC~-cGH~~C~~C~~~ 86 (272)
-.|.+|...+..- -.-|. ||.+||..|-..
T Consensus 165 ~~C~~C~~~F~~~~RrhHCR~CG~v~C~~Cs~~ 197 (226)
T 3zyq_A 165 EECHRCRVQFGVMTRKHHCRACGQIFCGKCSSK 197 (226)
T ss_dssp SBCTTTCCBCBTTBCCEECTTTCCEECTTTCCE
T ss_pred CCCcCcCCCCCccccccccCCCcCEeChhhcCC
Confidence 4899999877522 23576 999999999765
No 184
>1wfe_A Riken cDNA 2310008M20 protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=40.68 E-value=20 Score=25.70 Aligned_cols=40 Identities=13% Similarity=0.453 Sum_probs=28.1
Q ss_pred CCCeeeecc--ccccCcCCccccc-CCceeccCcccccCCCCCC
Q 046177 53 VRELLECPV--CLNAMYPPIHQCS-NGHTLCSGCKPRVHNRCPT 93 (272)
Q Consensus 53 ~~~~l~Cpi--C~~~l~~Pv~qC~-cGH~~C~~C~~~~~~~CP~ 93 (272)
......|+. |......|+ .|. ||..||..=+......|+.
T Consensus 22 ~~~~~~C~~~~Ck~~~~l~f-~C~~C~~~FC~~HR~~e~H~C~~ 64 (86)
T 1wfe_A 22 EHKSYSCSFKGCTDVELVAV-ICPYCEKNFCLRHRHQSDHDCEK 64 (86)
T ss_dssp CSCCEECCSTTCCCEESSCE-ECTTTCCEECGGGCSTGGGTCSS
T ss_pred CCCCCCCCCcCCCCCCccce-ECCCCCcccccccCCccCCCCCC
Confidence 344568999 998877775 899 9999998644333345653
No 185
>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1
Probab=40.56 E-value=49 Score=22.93 Aligned_cols=45 Identities=29% Similarity=0.370 Sum_probs=28.5
Q ss_pred CCceecc-CcHHhhhhc-CCCccccCCCCCCCCcccc-ChhHHHHHhhhcCC
Q 046177 124 CMGIYPY-YSKLKHESQ-CIFRPYNCPYAGSECTVMG-DIPYLVAHLKDDHK 172 (272)
Q Consensus 124 C~~~~~~-~~~~~He~~-C~~~~~~CP~~~~~C~~~g-~~~~l~~Hl~~~H~ 172 (272)
|...+.. ..+..|+.. -.-.++.|+. |+... ....|..|+...+.
T Consensus 23 C~~~f~~~~~l~~H~~~h~~~~~~~C~~----C~~~f~~~~~l~~H~~~h~~ 70 (106)
T 2ee8_A 23 CGRHFTKSYNLLIHERTHTDERPYTCDI----CHKAFRRQDHLRDHRYIHSK 70 (106)
T ss_dssp SCCBCSSHHHHHHHHHHHCCSCCCBCSS----SCCBCSCHHHHHHHGGGSCC
T ss_pred CCCccCCHHHHHHHHHHcCCCCCcCCCC----ccchhCCHHHHHHHHHHhCC
Confidence 5554433 245566653 2346789987 77666 56789999876554
No 186
>1dl6_A Transcription factor II B (TFIIB); zinc ribbon, gene regulation; NMR {Homo sapiens} SCOP: g.41.3.1 PDB: 1rly_A 1ro4_A
Probab=40.22 E-value=24 Score=23.15 Aligned_cols=37 Identities=19% Similarity=0.410 Sum_probs=24.1
Q ss_pred cccCCCCeeeeccccccCcCCcccccCCceeccCccccc
Q 046177 49 VSSSVRELLECPVCLNAMYPPIHQCSNGHTLCSGCKPRV 87 (272)
Q Consensus 49 ~~~~~~~~l~CpiC~~~l~~Pv~qC~cGH~~C~~C~~~~ 87 (272)
+.+++...+.||.|...- -++.-..|-++|..|-.-+
T Consensus 4 ~~~~ll~~~~Cp~C~~~~--lv~D~~~ge~vC~~CGlVl 40 (58)
T 1dl6_A 4 SRLDALPRVTCPNHPDAI--LVEDYRAGDMICPECGLVV 40 (58)
T ss_dssp CSCCCCSCCSBTTBSSSC--CEECSSSCCEECTTTCCEE
T ss_pred chhhccccccCcCCCCCc--eeEeCCCCeEEeCCCCCEE
Confidence 346677888999997621 1233247888888885443
No 187
>1wjv_A Cell growth regulating nucleolar protein LYAR; DNA-binding protein, C2H2 type zinc-finger, structural genomics; NMR {Mus musculus} SCOP: g.37.1.2 g.37.1.2
Probab=39.85 E-value=8 Score=27.40 Aligned_cols=42 Identities=19% Similarity=0.087 Sum_probs=34.2
Q ss_pred CCCCceeccCcHHhhhhcCCC-ccccCCCCCCCCccccChhHHHHHh
Q 046177 122 YGCMGIYPYYSKLKHESQCIF-RPYNCPYAGSECTVMGDIPYLVAHL 167 (272)
Q Consensus 122 ~GC~~~~~~~~~~~He~~C~~-~~~~CP~~~~~C~~~g~~~~l~~Hl 167 (272)
.+|.+.+.-..++.|...|.. ..+.|-. |.......++..|.
T Consensus 14 ~~Cgd~lKK~kv~~H~~~Cr~~~~~SCID----C~~~F~~~~y~~Ht 56 (79)
T 1wjv_A 14 NACGESVKKIQVEKHVSNCRNCECLSCID----CGKDFWGDDYKSHV 56 (79)
T ss_dssp SSSCCEEETTHHHHHHHHCTTCCEEEETT----TTEEEEGGGTTTCC
T ss_pred CCCCCeeecccchhHHhhCCCCCcEEecc----cCCeeCCCCEeCEe
Confidence 369999999999999999986 4788965 88777777776663
No 188
>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3, LIM-domain protein DRAL, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=38.91 E-value=10 Score=25.11 Aligned_cols=33 Identities=15% Similarity=0.404 Sum_probs=20.2
Q ss_pred CeeeeccccccCcCCcccccCCceeccCccccc
Q 046177 55 ELLECPVCLNAMYPPIHQCSNGHTLCSGCKPRV 87 (272)
Q Consensus 55 ~~l~CpiC~~~l~~Pv~qC~cGH~~C~~C~~~~ 87 (272)
+-|.|..|...|....+.-..|..+|..|..+.
T Consensus 30 ~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~ 62 (70)
T 2d8z_A 30 ECFVCTACRKQLSGQRFTARDDFAYCLNCFCDL 62 (70)
T ss_dssp TTSBCSSSCCBCTTSCCEESSSSEECHHHHHHH
T ss_pred CCCccCCCCCcCCcCceEeeCCeEECHHHHHHH
Confidence 446677777777543233256777777776554
No 189
>3vhs_A ATPase wrnip1; zinc finger, ubiquitin-binding domain, ubiquitin binding, ME binding protein; 1.90A {Homo sapiens}
Probab=38.44 E-value=8.7 Score=21.18 Aligned_cols=17 Identities=24% Similarity=0.520 Sum_probs=7.8
Q ss_pred CCceeccCcHHhhhhcC
Q 046177 124 CMGIYPYYSKLKHESQC 140 (272)
Q Consensus 124 C~~~~~~~~~~~He~~C 140 (272)
|+..++-..+..|.+.|
T Consensus 12 cqq~mpaahin~hldrc 28 (29)
T 3vhs_A 12 CQQMMPAAHINSHLDRC 28 (29)
T ss_dssp TCCEEEGGGHHHHHHHH
T ss_pred HHHhCcHHHHHHHHhcc
Confidence 44444444444444433
No 190
>1x4v_A Hypothetical protein LOC130617; ZF-AN1 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=38.44 E-value=25 Score=23.65 Aligned_cols=37 Identities=14% Similarity=0.410 Sum_probs=25.0
Q ss_pred Ceeeecc--ccccCcCCccccc-CCceeccCcccccCCCCC
Q 046177 55 ELLECPV--CLNAMYPPIHQCS-NGHTLCSGCKPRVHNRCP 92 (272)
Q Consensus 55 ~~l~Cpi--C~~~l~~Pv~qC~-cGH~~C~~C~~~~~~~CP 92 (272)
..-.|+. |...-..|+ .|. |+..||..=+..-...|+
T Consensus 11 ~~~~Cs~~~Ck~~~ll~f-~C~~C~~~FC~~HR~~e~H~C~ 50 (63)
T 1x4v_A 11 FTNKCERAGCRQREMMKL-TCERCSRNFCIKHRHPLDHDCS 50 (63)
T ss_dssp TCCCCCSTTCCCCCSSCC-BCSSSCCBCCHHHHSTTSSCCC
T ss_pred cCCCCCccCCCCCCccce-ECCCCCcccCcccCCccCCcCC
Confidence 3457888 998766675 898 999999754333234555
No 191
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=37.52 E-value=11 Score=25.18 Aligned_cols=33 Identities=15% Similarity=0.428 Sum_probs=22.2
Q ss_pred CeeeeccccccCcCCcccccCCceeccCccccc
Q 046177 55 ELLECPVCLNAMYPPIHQCSNGHTLCSGCKPRV 87 (272)
Q Consensus 55 ~~l~CpiC~~~l~~Pv~qC~cGH~~C~~C~~~~ 87 (272)
+=|.|..|...|....+.-..|..+|..|..+.
T Consensus 34 ~CF~C~~C~~~L~~~~f~~~~g~~yC~~c~~~~ 66 (72)
T 1x4l_A 34 DCFNCKKCSLSLVGRGFLTERDDILCPDCGKDI 66 (72)
T ss_dssp TTCBCSSSCCBCTTSCCEECSSSEECHHHHHTC
T ss_pred ccCEeccCCCcCCCCccEeECCEEEChhHcCcc
Confidence 447788888877654333357788888887654
No 192
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=36.72 E-value=17 Score=28.98 Aligned_cols=42 Identities=21% Similarity=0.491 Sum_probs=28.1
Q ss_pred CeeeeccccccCc---CCccccc-CCceeccCcccccC----CCCCCccc
Q 046177 55 ELLECPVCLNAMY---PPIHQCS-NGHTLCSGCKPRVH----NRCPTCRH 96 (272)
Q Consensus 55 ~~l~CpiC~~~l~---~Pv~qC~-cGH~~C~~C~~~~~----~~CP~Cr~ 96 (272)
..-.|.+|...|. .+-.+|. |.|.+|..|..... -.|-.|+.
T Consensus 67 ~~~~C~~C~~~fg~l~~~g~~C~~C~~~VC~~C~~~~~~~~~W~C~vC~k 116 (153)
T 2zet_C 67 NETHCARCLQPYRLLLNSRRQCLECSLFVCKSCSHAHPEEQGWLCDPCHL 116 (153)
T ss_dssp GGTBCTTTCCBGGGCSSCCEECTTTCCEECGGGEECCSSSSSCEEHHHHH
T ss_pred CCccchhhcCccccccCCCCcCCCCCchhhcccccccCCCCcEeeHHHHH
Confidence 4568999999853 3334676 99999999974431 24555644
No 193
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=36.22 E-value=19 Score=23.68 Aligned_cols=30 Identities=13% Similarity=0.185 Sum_probs=18.3
Q ss_pred CCeeeeccccccCc--CCccccc-CCceeccCc
Q 046177 54 RELLECPVCLNAMY--PPIHQCS-NGHTLCSGC 83 (272)
Q Consensus 54 ~~~l~CpiC~~~l~--~Pv~qC~-cGH~~C~~C 83 (272)
.+...|++|..+.. ..++||. |...|=..|
T Consensus 4 ~e~~~C~~C~~~~~~~~~mI~Cd~C~~WfH~~C 36 (64)
T 1we9_A 4 GSSGQCGACGESYAADEFWICCDLCEMWFHGKC 36 (64)
T ss_dssp SSCCCCSSSCCCCCSSSCEEECSSSCCEEETTT
T ss_pred CCCCCCCCCCCccCCCCCEEEccCCCCCCCccc
Confidence 45567999998873 3456775 443333334
No 194
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=36.07 E-value=24 Score=20.76 Aligned_cols=26 Identities=27% Similarity=0.553 Sum_probs=19.9
Q ss_pred cccCCCCCCCCccc-cChhHHHHHhhhcCCC
Q 046177 144 PYNCPYAGSECTVM-GDIPYLVAHLKDDHKV 173 (272)
Q Consensus 144 ~~~CP~~~~~C~~~-g~~~~l~~Hl~~~H~~ 173 (272)
.+.||. |... ++...|..|.+..|..
T Consensus 5 GFiCP~----C~~~l~s~~~L~~Hye~~H~~ 31 (34)
T 3mjh_B 5 GFICPQ----CMKSLGSADELFKHYEAVHDA 31 (34)
T ss_dssp EEECTT----TCCEESSHHHHHHHHHHHTSS
T ss_pred ccCCcH----HHHHcCCHHHHHHHHHhcccc
Confidence 367887 6443 4778999999999974
No 195
>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1
Probab=36.04 E-value=26 Score=17.76 Aligned_cols=25 Identities=24% Similarity=0.454 Sum_probs=16.3
Q ss_pred cccCCCCCCCCcccc-ChhHHHHHhhhcCC
Q 046177 144 PYNCPYAGSECTVMG-DIPYLVAHLKDDHK 172 (272)
Q Consensus 144 ~~~CP~~~~~C~~~g-~~~~l~~Hl~~~H~ 172 (272)
|+.|+. |+... ....|..|+...|.
T Consensus 2 ~~~C~~----C~k~f~~~~~l~~H~~~~H~ 27 (30)
T 1paa_A 2 AYACGL----CNRAFTRRDLLIRHAQKIHS 27 (30)
T ss_dssp CSBCTT----TCCBCSSSHHHHHHHTTTSC
T ss_pred CcCCcc----cCcccCChHHHHHHHHHHcc
Confidence 567876 66554 44688889655554
No 196
>2vy4_A U11/U12 small nuclear ribonucleoprotein 48 kDa protein; splicing, mRNA processing, alternative splicing, transcription, nucleus, spliceosome; NMR {Homo sapiens} SCOP: g.37.1.7 PDB: 2vy5_A
Probab=35.81 E-value=12 Score=22.32 Aligned_cols=25 Identities=28% Similarity=0.405 Sum_probs=15.5
Q ss_pred CCCcccccCCCCceeccCcHHhhhhcCC
Q 046177 114 ELPCKYQSYGCMGIYPYYSKLKHESQCI 141 (272)
Q Consensus 114 ~v~C~~~~~GC~~~~~~~~~~~He~~C~ 141 (272)
.+.||| ...-.++...+..|...|.
T Consensus 5 ~v~CPy---d~~H~i~~~~l~~Hl~kC~ 29 (37)
T 2vy4_A 5 VVICPY---DSNHHMPKSSLAKHMASCR 29 (37)
T ss_dssp CEECTT---TSSCEECGGGHHHHHHHHH
T ss_pred EEECCC---CCCeEeCHHHHHHHHHHHh
Confidence 355665 3556666667777766664
No 197
>2jvx_A NF-kappa-B essential modulator; CCHC classical zinc finger, NEMO zinc finger, beta-BETA- alpha fold, coiled coil, cytoplasm, disease mutation; NMR {Synthetic} PDB: 2jvy_A
Probab=35.48 E-value=11 Score=21.20 Aligned_cols=14 Identities=21% Similarity=0.330 Sum_probs=7.0
Q ss_pred eeeeccccccCcCC
Q 046177 56 LLECPVCLNAMYPP 69 (272)
Q Consensus 56 ~l~CpiC~~~l~~P 69 (272)
++.||+|...+-++
T Consensus 3 k~~CpvCk~q~Pd~ 16 (28)
T 2jvx_A 3 DFCCPKCQYQAPDM 16 (28)
T ss_dssp CEECTTSSCEESSH
T ss_pred cccCccccccCcCh
Confidence 44555555544433
No 198
>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=35.38 E-value=28 Score=17.39 Aligned_cols=23 Identities=26% Similarity=0.465 Sum_probs=15.4
Q ss_pred ccccCCCCCCCCcccc-ChhHHHHHhhh
Q 046177 143 RPYNCPYAGSECTVMG-DIPYLVAHLKD 169 (272)
Q Consensus 143 ~~~~CP~~~~~C~~~g-~~~~l~~Hl~~ 169 (272)
+++.|+. |+... ....|..|...
T Consensus 2 k~~~C~~----C~k~f~~~~~l~~H~~~ 25 (28)
T 2kvf_A 2 RPYSCSV----CGKRFSLKHQMETHYRV 25 (28)
T ss_dssp CSEECSS----SCCEESCHHHHHHHHTT
T ss_pred cCccCCC----CCcccCCHHHHHHHHHh
Confidence 3677876 66654 45688888764
No 199
>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic} SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A
Probab=35.03 E-value=26 Score=17.56 Aligned_cols=25 Identities=36% Similarity=0.817 Sum_probs=16.6
Q ss_pred cccCCCCCCCCcccc-ChhHHHHHhhhcCC
Q 046177 144 PYNCPYAGSECTVMG-DIPYLVAHLKDDHK 172 (272)
Q Consensus 144 ~~~CP~~~~~C~~~g-~~~~l~~Hl~~~H~ 172 (272)
++.|+. |+... ....|..|....|.
T Consensus 2 ~~~C~~----C~k~f~~~~~l~~H~~~h~~ 27 (30)
T 1klr_A 2 TYQCQY----CEFRSADSSNLKTHIKTKHS 27 (30)
T ss_dssp CCCCSS----SSCCCSCSHHHHHHHHHHTS
T ss_pred CccCCC----CCCccCCHHHHHHHHHHHcc
Confidence 567776 65554 44688899876553
No 200
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=34.41 E-value=18 Score=25.97 Aligned_cols=37 Identities=22% Similarity=0.383 Sum_probs=26.6
Q ss_pred cCCCCeeeeccccccCcCCccccc-CCceeccCccccc
Q 046177 51 SSVRELLECPVCLNAMYPPIHQCS-NGHTLCSGCKPRV 87 (272)
Q Consensus 51 ~~~~~~l~CpiC~~~l~~Pv~qC~-cGH~~C~~C~~~~ 87 (272)
+++..+-.|.||...-..-++.|. |+-+|=..|+.+.
T Consensus 10 e~~~~D~~C~VC~~~t~~~l~pCRvC~RvfH~~CL~r~ 47 (89)
T 1wil_A 10 EPVVNDEMCDVCEVWTAESLFPCRVCTRVFHDGCLRRM 47 (89)
T ss_dssp CCCCCSCCCTTTCCCCSSCCSSCSSSSSCCCHHHHHHH
T ss_pred cCCCCCcccCccccccccceeccccccccccHhhcccc
Confidence 445566789999987777777886 7766666676663
No 201
>1a7i_A QCRP2 (LIM1); LIM domain containing proteins, metal-binding protein, zinc finger; NMR {Coturnix japonica} SCOP: g.39.1.3 g.39.1.3 PDB: 2o10_A
Probab=34.39 E-value=11 Score=25.92 Aligned_cols=41 Identities=12% Similarity=0.246 Sum_probs=21.2
Q ss_pred CeeeeccccccCcCCcccccCCceeccCccccc-CCCCCCcc
Q 046177 55 ELLECPVCLNAMYPPIHQCSNGHTLCSGCKPRV-HNRCPTCR 95 (272)
Q Consensus 55 ~~l~CpiC~~~l~~Pv~qC~cGH~~C~~C~~~~-~~~CP~Cr 95 (272)
+=|.|..|...|..--+.-..|..+|..|..+. ..+|-.|.
T Consensus 33 ~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f~~~c~gcg 74 (81)
T 1a7i_A 33 CCFLCMVCRKNLDSTTVAIHDAEVYCKSCYGKKYGPKGYGYG 74 (81)
T ss_dssp SSEECSSSCCEECSSCCEEETTEEECSHHHHHHCC-------
T ss_pred ccCccCCCCCCCCCCCeEeeCCEEECHHHHHHHhCCcccccC
Confidence 446777777777544223247777777777654 34454443
No 202
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=34.28 E-value=20 Score=27.80 Aligned_cols=33 Identities=15% Similarity=0.442 Sum_probs=23.6
Q ss_pred CeeeeccccccCc---CCccccc-CCceeccCccccc
Q 046177 55 ELLECPVCLNAMY---PPIHQCS-NGHTLCSGCKPRV 87 (272)
Q Consensus 55 ~~l~CpiC~~~l~---~Pv~qC~-cGH~~C~~C~~~~ 87 (272)
..-.|.+|...+. .+=.+|. |.|.+|..|....
T Consensus 54 ~~~~C~~C~~~~g~l~~~g~~C~~C~~~VC~~C~~~~ 90 (134)
T 1zbd_B 54 GVNRCILCGEQLGMLGSASVVCEDCKKNVCTKCGVET 90 (134)
T ss_dssp SSSBCSSSCCBCSTTSCCEEECTTTCCEEETTSEEEC
T ss_pred CCccccccCCCcccccCCCCCCCCCCcccccccCCcc
Confidence 4457999999883 2223565 8899999997754
No 203
>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A
Probab=33.87 E-value=36 Score=16.90 Aligned_cols=23 Identities=22% Similarity=0.374 Sum_probs=15.6
Q ss_pred cccCCCCCCCCcccc-ChhHHHHHhhhc
Q 046177 144 PYNCPYAGSECTVMG-DIPYLVAHLKDD 170 (272)
Q Consensus 144 ~~~CP~~~~~C~~~g-~~~~l~~Hl~~~ 170 (272)
++.|+. |+... ....|..|....
T Consensus 2 ~~~C~~----C~~~f~~~~~l~~H~~~h 25 (29)
T 1ard_A 2 SFVCEV----CTRAFARQEHLKRHYRSH 25 (29)
T ss_dssp CCBCTT----TCCBCSSHHHHHHHHHHH
T ss_pred CeECCC----CCcccCCHHHHHHHHHHh
Confidence 567876 66655 456888897753
No 204
>1wig_A KIAA1808 protein; LIM domain, zinc finger, metal-binding protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=33.75 E-value=15 Score=24.83 Aligned_cols=33 Identities=9% Similarity=0.125 Sum_probs=23.3
Q ss_pred CeeeeccccccCc-CCcccccCCceeccCccccc
Q 046177 55 ELLECPVCLNAMY-PPIHQCSNGHTLCSGCKPRV 87 (272)
Q Consensus 55 ~~l~CpiC~~~l~-~Pv~qC~cGH~~C~~C~~~~ 87 (272)
+-|.|..|...|. ...+.=..|.++|..|..++
T Consensus 30 ~CF~C~~C~~~L~~~~~f~~~~~~~yC~~C~~~~ 63 (73)
T 1wig_A 30 SCALCVRCGQMFAEGEEMYLQGSSIWHPACRQAA 63 (73)
T ss_dssp TTSCCSSSCCCCCSSCCCEEETTEEECTTHHHHT
T ss_pred CcCEeCCCCCCCCCCCeeEeeCCEEEChHHChHh
Confidence 5578999998886 33222257888998887765
No 205
>2cur_A Skeletal muscle LIM-protein 1; four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=33.55 E-value=12 Score=24.64 Aligned_cols=32 Identities=13% Similarity=0.355 Sum_probs=16.8
Q ss_pred eeeeccccccCcCCcccccCCceeccCccccc
Q 046177 56 LLECPVCLNAMYPPIHQCSNGHTLCSGCKPRV 87 (272)
Q Consensus 56 ~l~CpiC~~~l~~Pv~qC~cGH~~C~~C~~~~ 87 (272)
=|.|..|...|....+.-..|..+|..|..+.
T Consensus 31 CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~ 62 (69)
T 2cur_A 31 CFVCVTCSKKLAGQRFTAVEDQYYCVDCYKNF 62 (69)
T ss_dssp TTBCTTTCCBCTTSCEEECSSCEEEHHHHHHH
T ss_pred cCEECCCCCCCCCCccEeECCEEECHHHhHHH
Confidence 35566666666443222245666666665543
No 206
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=33.43 E-value=17 Score=24.48 Aligned_cols=31 Identities=26% Similarity=0.637 Sum_probs=16.4
Q ss_pred eeeeccccccCcCCcccccCCceecc-Ccccc
Q 046177 56 LLECPVCLNAMYPPIHQCSNGHTLCS-GCKPR 86 (272)
Q Consensus 56 ~l~CpiC~~~l~~Pv~qC~cGH~~C~-~C~~~ 86 (272)
=|.|..|...|..-.+.-..|..+|. .|..+
T Consensus 36 CF~C~~C~~~L~~~~~~~~~g~~yC~~~cy~~ 67 (76)
T 2cu8_A 36 CLKCERCSKTLTPGGHAEHDGKPFCHKPCYAT 67 (76)
T ss_dssp TCBCSSSCCBCCTTSCEEETTEEECTTTHHHH
T ss_pred CCCCCCCCCccCCCceEeECCEEecchHHHHH
Confidence 35566666666543222245666666 46554
No 207
>2cor_A Pinch protein; LIM domain, particularly interesting NEW Cys- His protein, LIM and senescent cell antigen-like domains 1, structural genomics; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=33.15 E-value=17 Score=24.91 Aligned_cols=32 Identities=16% Similarity=0.533 Sum_probs=17.3
Q ss_pred CeeeeccccccCcCCcccccCCceeccCccccc
Q 046177 55 ELLECPVCLNAMYPPIHQCSNGHTLCSGCKPRV 87 (272)
Q Consensus 55 ~~l~CpiC~~~l~~Pv~qC~cGH~~C~~C~~~~ 87 (272)
+-|.|..|...|..-.+. ..|..+|..|..+.
T Consensus 40 ~CF~C~~C~~~L~~~~f~-~~g~~yC~~cy~~~ 71 (79)
T 2cor_A 40 DHFNCANCGKELTADARE-LKGELYCLPCHDKM 71 (79)
T ss_dssp TTSBCSSSCCBCCTTCEE-ETTEEECHHHHHTT
T ss_pred CCCEeCCCCCccCCCCEe-ECCEEeCHHHHHHh
Confidence 335666666665543332 45666666665543
No 208
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=32.86 E-value=90 Score=22.38 Aligned_cols=46 Identities=22% Similarity=0.452 Sum_probs=27.3
Q ss_pred CCCCeeeeccccccCcCCccccc---CC-ceeccCccccc-----CCCCCCcccCC
Q 046177 52 SVRELLECPVCLNAMYPPIHQCS---NG-HTLCSGCKPRV-----HNRCPTCRHEL 98 (272)
Q Consensus 52 ~~~~~l~CpiC~~~l~~Pv~qC~---cG-H~~C~~C~~~~-----~~~CP~Cr~~~ 98 (272)
+..+...| +|..+....+++|. |. ..|=..|+.-. ...||.|+...
T Consensus 32 d~~e~~yC-iC~~~~~g~MI~CD~~dC~~~WfH~~CVgl~~~p~g~W~Cp~C~~~~ 86 (91)
T 1weu_A 32 DPNEPTYC-LCHQVSYGEMIGCDNPDCSIEWFHFACVGLTTKPRGKWFCPRCSQES 86 (91)
T ss_dssp CSCCCBCS-TTCCBCCSCCCCCSCSSCSCCCCCSTTTTCSSCCCSSCCCTTTCCCC
T ss_pred CCCCCcEE-ECCCCCCCCEeEecCCCCCCCCEecccCCcCcCCCCCEECcCccCcC
Confidence 34566778 99998766777876 32 23434444321 24688886543
No 209
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=32.51 E-value=16 Score=25.64 Aligned_cols=37 Identities=16% Similarity=0.432 Sum_probs=20.5
Q ss_pred eeeccccccCcCCcccccCCceeccCcccccCCCCCCcccCCC
Q 046177 57 LECPVCLNAMYPPIHQCSNGHTLCSGCKPRVHNRCPTCRHELG 99 (272)
Q Consensus 57 l~CpiC~~~l~~Pv~qC~cGH~~C~~C~~~~~~~CP~Cr~~~~ 99 (272)
-.|+.|..++...++. .-|..+=..| ..|..|+.+|.
T Consensus 26 ~~C~~C~~~I~~~~v~-a~~~~~H~~C-----F~C~~C~~~L~ 62 (90)
T 2dar_A 26 PMCAHCNQVIRGPFLV-ALGKSWHPEE-----FNCAHCKNTMA 62 (90)
T ss_dssp CBBSSSCCBCCSCEEE-ETTEEECTTT-----CBCSSSCCBCS
T ss_pred CCCccCCCEecceEEE-ECCccccccC-----CccCCCCCCCC
Confidence 4677777777655433 3454444444 24556666554
No 210
>2ehe_A Four and A half LIM domains 3; FHL-3, skeletal muscle LIM- protein 2, SLIM 2, FHL3, SLIM2, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=32.38 E-value=21 Score=24.43 Aligned_cols=33 Identities=18% Similarity=0.512 Sum_probs=21.0
Q ss_pred CeeeeccccccCcCCcccccCCceeccCccccc
Q 046177 55 ELLECPVCLNAMYPPIHQCSNGHTLCSGCKPRV 87 (272)
Q Consensus 55 ~~l~CpiC~~~l~~Pv~qC~cGH~~C~~C~~~~ 87 (272)
+=|.|..|...|..--+.-..|.++|..|..+.
T Consensus 42 ~CF~C~~C~~~L~~~~f~~~~~~~~C~~c~~~~ 74 (82)
T 2ehe_A 42 GCFRCCRCQRSLADEPFTCQDSELLCNDCYCSA 74 (82)
T ss_dssp TTSBCTTTCCBCSSCCEEEETTEEEETTTSSCC
T ss_pred cCCeecCCCCccCCCccEeeCCEEECHHHHhhh
Confidence 346777887777653232256777887776654
No 211
>1b8t_A Protein (CRP1); LIM domain, muscle differentiation, contractIle; NMR {Gallus gallus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 1ibi_A 1qli_A 1cxx_A 1ctl_A 2o13_A
Probab=32.21 E-value=17 Score=29.44 Aligned_cols=11 Identities=45% Similarity=0.966 Sum_probs=6.4
Q ss_pred eeeccccccCc
Q 046177 57 LECPVCLNAMY 67 (272)
Q Consensus 57 l~CpiC~~~l~ 67 (272)
-.|+.|...+.
T Consensus 116 ~~C~~C~~~I~ 126 (192)
T 1b8t_A 116 DGCPRCGQAVY 126 (192)
T ss_dssp EECTTTSCEEC
T ss_pred CcCCCCCCEec
Confidence 45666666554
No 212
>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=31.36 E-value=34 Score=16.93 Aligned_cols=23 Identities=26% Similarity=0.811 Sum_probs=15.3
Q ss_pred ccccCCCCCCCCcccc-ChhHHHHHhhh
Q 046177 143 RPYNCPYAGSECTVMG-DIPYLVAHLKD 169 (272)
Q Consensus 143 ~~~~CP~~~~~C~~~g-~~~~l~~Hl~~ 169 (272)
+|+.|+. |+... ....|..|.+.
T Consensus 2 k~~~C~~----C~k~f~~~~~l~~H~~~ 25 (27)
T 2kvh_A 2 KPFSCSL----CPQRSRDFSAMTKHLRT 25 (27)
T ss_dssp CCEECSS----SSCEESSHHHHHHHHHH
T ss_pred cCccCCC----cChhhCCHHHHHHHHHH
Confidence 4677875 76665 45678888754
No 213
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=31.34 E-value=25 Score=23.93 Aligned_cols=47 Identities=19% Similarity=0.411 Sum_probs=26.3
Q ss_pred CCCCeeeeccccccCcC-Cccccc-CCceeccCccccc-------CCCCCCcccCC
Q 046177 52 SVRELLECPVCLNAMYP-PIHQCS-NGHTLCSGCKPRV-------HNRCPTCRHEL 98 (272)
Q Consensus 52 ~~~~~l~CpiC~~~l~~-Pv~qC~-cGH~~C~~C~~~~-------~~~CP~Cr~~~ 98 (272)
+..+...|++|...-.. .+++|. |...|=..|+... ...||.|+..+
T Consensus 14 ~~~~~~~C~~C~~~~~~~~mi~CD~C~~wfH~~Cv~~~~~~~~~~~w~C~~C~~~~ 69 (75)
T 2k16_A 14 WGNQIWICPGCNKPDDGSPMIGCDDCDDWYHWPCVGIMAAPPEEMQWFCPKCANKI 69 (75)
T ss_dssp SSCEEECBTTTTBCCSSCCEEECSSSSSEEEHHHHTCSSCCCSSSCCCCTTTHHHH
T ss_pred cCCCCcCCCCCCCCCCCCCEEEcCCCCcccccccCCCCccCCCCCCEEChhccCch
Confidence 34566779999887543 456776 5433333343221 13577776543
No 214
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=31.14 E-value=52 Score=23.78 Aligned_cols=43 Identities=14% Similarity=0.270 Sum_probs=27.0
Q ss_pred CCeeeeccccccCc-CCccccc-CCceeccCccccc------CCCCCCcccC
Q 046177 54 RELLECPVCLNAMY-PPIHQCS-NGHTLCSGCKPRV------HNRCPTCRHE 97 (272)
Q Consensus 54 ~~~l~CpiC~~~l~-~Pv~qC~-cGH~~C~~C~~~~------~~~CP~Cr~~ 97 (272)
.+...| ||...-. ..+++|. |...|=..|+... ...||.|+..
T Consensus 26 ~d~vrC-iC~~~~~~~~mi~Cd~C~~w~H~~C~~~~~~~~p~~w~C~~C~~~ 76 (98)
T 2lv9_A 26 TDVTRC-ICGFTHDDGYMICCDKCSVWQHIDCMGIDRQHIPDTYLCERCQPR 76 (98)
T ss_dssp CCBCCC-TTSCCSCSSCEEEBTTTCBEEETTTTTCCTTSCCSSBCCTTTSSS
T ss_pred CCCEEe-ECCCccCCCcEEEcCCCCCcCcCcCCCCCccCCCCCEECCCCcCC
Confidence 345678 7877653 4567886 7766656665432 1479999753
No 215
>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger, transcription factor, DNA binding protein; NMR {Mus musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A
Probab=30.87 E-value=50 Score=17.73 Aligned_cols=25 Identities=28% Similarity=0.551 Sum_probs=17.4
Q ss_pred CccccCCCCCCCCcccc-ChhHHHHHhhhc
Q 046177 142 FRPYNCPYAGSECTVMG-DIPYLVAHLKDD 170 (272)
Q Consensus 142 ~~~~~CP~~~~~C~~~g-~~~~l~~Hl~~~ 170 (272)
-+|+.|+. |+... ....|..|....
T Consensus 9 ~k~~~C~~----C~k~f~~~~~l~~H~~~H 34 (37)
T 1p7a_A 9 IKPFQCPD----CDRSFSRSDHLALHRKRH 34 (37)
T ss_dssp SSSBCCTT----TCCCBSSHHHHHHHHGGG
T ss_pred CCCccCCC----CCcccCcHHHHHHHHHHh
Confidence 35788986 76655 456888897653
No 216
>2egq_A FHL1 protein; LIM domain, four and A half LIM domains protein 1, skeletal muscle LIM- protein 1, SLIM 1, structural genomics NPPSFA; NMR {Homo sapiens}
Probab=30.45 E-value=13 Score=25.15 Aligned_cols=10 Identities=30% Similarity=0.793 Sum_probs=5.0
Q ss_pred eeccccccCc
Q 046177 58 ECPVCLNAMY 67 (272)
Q Consensus 58 ~CpiC~~~l~ 67 (272)
.|+.|..++.
T Consensus 17 ~C~~C~~~I~ 26 (77)
T 2egq_A 17 KCAGCKNPIT 26 (77)
T ss_dssp CCSSSCCCCC
T ss_pred cCcccCCccc
Confidence 3555555544
No 217
>4gzn_C ZFP-57, zinc finger protein 57; transcription-DNA complex; HET: DNA 5CM; 0.99A {Mus musculus}
Probab=30.35 E-value=39 Score=21.87 Aligned_cols=44 Identities=30% Similarity=0.455 Sum_probs=28.7
Q ss_pred CCceeccC-cHHhhhhc-CCCccccCCCCCCCCcccc-ChhHHHHHhhhcCC
Q 046177 124 CMGIYPYY-SKLKHESQ-CIFRPYNCPYAGSECTVMG-DIPYLVAHLKDDHK 172 (272)
Q Consensus 124 C~~~~~~~-~~~~He~~-C~~~~~~CP~~~~~C~~~g-~~~~l~~Hl~~~H~ 172 (272)
|+..+... .|..|+.. =.-+|+.|+. |+... ....|..|++. |.
T Consensus 10 C~k~F~~~~~L~~H~~~Ht~ekp~~C~~----C~k~F~~~~~L~~H~~~-Ht 56 (60)
T 4gzn_C 10 CGKTYRDASGLSRHRRAHLGYRPRSCPE----CGKCFRDQSEVNRHLKV-HQ 56 (60)
T ss_dssp TCCEESSHHHHHHHHHHHHTCCCEECTT----TCCEESSHHHHHHHGGG-GS
T ss_pred CCCEeCCHHHHHHHHHHhCCCcCeECCC----CCCCcCCHHHHHHHhCc-cC
Confidence 66666543 46677653 2346889986 77666 45789999763 53
No 218
>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A
Probab=30.29 E-value=32 Score=17.18 Aligned_cols=22 Identities=23% Similarity=0.366 Sum_probs=15.0
Q ss_pred cccCCCCCCCCcccc-ChhHHHHHhhh
Q 046177 144 PYNCPYAGSECTVMG-DIPYLVAHLKD 169 (272)
Q Consensus 144 ~~~CP~~~~~C~~~g-~~~~l~~Hl~~ 169 (272)
|+.|+. |+... ....|..|...
T Consensus 2 ~~~C~~----C~k~f~~~~~l~~H~~~ 24 (29)
T 1rik_A 2 KFACPE----CPKRFMRSDHLTLHILL 24 (29)
T ss_dssp CEECSS----SSCEESCSHHHHHHHTG
T ss_pred CccCCC----CCchhCCHHHHHHHHHH
Confidence 567876 66554 45678888765
No 219
>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR {Xenopus laevis} SCOP: g.37.1.1
Probab=30.26 E-value=46 Score=16.17 Aligned_cols=22 Identities=23% Similarity=0.422 Sum_probs=13.6
Q ss_pred cccCCCCCCCCcccc-ChhHHHHHhhh
Q 046177 144 PYNCPYAGSECTVMG-DIPYLVAHLKD 169 (272)
Q Consensus 144 ~~~CP~~~~~C~~~g-~~~~l~~Hl~~ 169 (272)
|+.|+. |+... ....|..|...
T Consensus 1 ~~~C~~----C~k~f~~~~~l~~H~~~ 23 (27)
T 1znf_A 1 XYKCGL----CERSFVEKSALSRHQRV 23 (27)
T ss_dssp -CBCSS----SCCBCSSHHHHHHHGGG
T ss_pred CccCCC----CCCcCCCHHHHHHHHHH
Confidence 356765 66554 45678888764
No 220
>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B
Probab=30.09 E-value=12 Score=24.43 Aligned_cols=31 Identities=16% Similarity=0.320 Sum_probs=16.9
Q ss_pred eeeeccccccCcCCcccccCCceeccCcccc
Q 046177 56 LLECPVCLNAMYPPIHQCSNGHTLCSGCKPR 86 (272)
Q Consensus 56 ~l~CpiC~~~l~~Pv~qC~cGH~~C~~C~~~ 86 (272)
=|.|..|...|....+.-..|..+|..|..+
T Consensus 31 CF~C~~C~~~L~~~~~~~~~g~~yC~~~y~~ 61 (66)
T 1nyp_A 31 HFVCAKCEKPFLGHRHYERKGLAYCETHYNQ 61 (66)
T ss_dssp TCBCTTTCCBCSSSCCEEETTEEECHHHHHH
T ss_pred cCEECCCCCCCCCCceEeECCcEECHHHHHH
Confidence 3566666666654322224666666666543
No 221
>1yuz_A Nigerythrin; rubrythrin, rubredoxin, hemerythrin, electron transfer, DIIR center, oxidoreductase; 1.40A {Desulfovibrio vulgaris subsp} SCOP: a.25.1.1 g.41.5.1 PDB: 1yv1_A 1yux_A
Probab=29.64 E-value=24 Score=29.27 Aligned_cols=10 Identities=30% Similarity=0.946 Sum_probs=7.2
Q ss_pred CCCCCcccCC
Q 046177 89 NRCPTCRHEL 98 (272)
Q Consensus 89 ~~CP~Cr~~~ 98 (272)
..||.|..+-
T Consensus 187 ~~CP~C~~~k 196 (202)
T 1yuz_A 187 EKCPICFRPK 196 (202)
T ss_dssp SBCTTTCCBG
T ss_pred CCCCCCCCCh
Confidence 3799997753
No 222
>3j21_g 50S ribosomal protein L40E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=29.53 E-value=18 Score=23.34 Aligned_cols=29 Identities=14% Similarity=0.188 Sum_probs=19.1
Q ss_pred ccCCCCeeeeccccccCcCCccccc-CCce
Q 046177 50 SSSVRELLECPVCLNAMYPPIHQCS-NGHT 78 (272)
Q Consensus 50 ~~~~~~~l~CpiC~~~l~~Pv~qC~-cGH~ 78 (272)
.+...+...||.|...+-+.+..|. |||.
T Consensus 8 e~r~~~k~iCpkC~a~~~~gaw~CrKCG~~ 37 (51)
T 3j21_g 8 EARIFKKYVCLRCGATNPWGAKKCRKCGYK 37 (51)
T ss_dssp HHHSSSEEECTTTCCEECTTCSSCSSSSSC
T ss_pred HHHHhCCccCCCCCCcCCCCceecCCCCCc
Confidence 4455677889999887554455655 5553
No 223
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=29.44 E-value=15 Score=24.35 Aligned_cols=32 Identities=16% Similarity=0.324 Sum_probs=17.3
Q ss_pred eeeeccccccCcCCcccccCCceeccCccccc
Q 046177 56 LLECPVCLNAMYPPIHQCSNGHTLCSGCKPRV 87 (272)
Q Consensus 56 ~l~CpiC~~~l~~Pv~qC~cGH~~C~~C~~~~ 87 (272)
=|.|..|...|..--+.-..|..+|..|..+.
T Consensus 33 CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~ 64 (72)
T 1wyh_A 33 CFLCSGCEQPLGSRSFVPDKGAHYCVPCYENK 64 (72)
T ss_dssp TCBCTTTCCBTTTSCEEEETTEEEEHHHHHHH
T ss_pred cCeECCCCCcCCCCccCCcCCeEECHHHHHHH
Confidence 35666666666542222246666666665543
No 224
>2cuq_A Four and A half LIM domains 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=29.17 E-value=27 Score=23.59 Aligned_cols=24 Identities=21% Similarity=0.455 Sum_probs=19.3
Q ss_pred CceeccCccccc-CCCCCCcccCCC
Q 046177 76 GHTLCSGCKPRV-HNRCPTCRHELG 99 (272)
Q Consensus 76 GH~~C~~C~~~~-~~~CP~Cr~~~~ 99 (272)
|..+|..|..+. ...|+.|..++.
T Consensus 2 g~~yC~~cy~~~~~~~C~~C~~~I~ 26 (80)
T 2cuq_A 2 SSGSSGPCYENKFAPRCARCSKTLT 26 (80)
T ss_dssp CCCSCCCCCCCCSSCCCTTTCCCCC
T ss_pred CcEEcHHHHccccCCcCCCCCCEec
Confidence 678899998875 478999988875
No 225
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=29.14 E-value=14 Score=24.42 Aligned_cols=31 Identities=23% Similarity=0.537 Sum_probs=16.4
Q ss_pred eeeeccccccCcCCcccccCCceeccCcccc
Q 046177 56 LLECPVCLNAMYPPIHQCSNGHTLCSGCKPR 86 (272)
Q Consensus 56 ~l~CpiC~~~l~~Pv~qC~cGH~~C~~C~~~ 86 (272)
=|.|..|...|..-.+.-..|..+|..|..+
T Consensus 31 CF~C~~C~~~L~~~~f~~~~g~~yC~~c~~~ 61 (70)
T 2d8x_A 31 CFRCDLCQEVLADIGFVKNAGRHLCRPCHNR 61 (70)
T ss_dssp TSBCSSSCCBCSSSCCEEETTEEECHHHHHH
T ss_pred CCEeCCCCCcCCCCccEeECCeEECHHHhhh
Confidence 3566666666554322223566666666544
No 226
>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=29.10 E-value=14 Score=24.53 Aligned_cols=30 Identities=13% Similarity=0.408 Sum_probs=15.0
Q ss_pred eeeccccccCcCCcccccCCceeccCcccc
Q 046177 57 LECPVCLNAMYPPIHQCSNGHTLCSGCKPR 86 (272)
Q Consensus 57 l~CpiC~~~l~~Pv~qC~cGH~~C~~C~~~ 86 (272)
|.|..|...|..-.+.-..|..+|..|..+
T Consensus 34 F~C~~C~~~L~~~~~~~~~~~~yC~~cy~~ 63 (72)
T 1x4k_A 34 FICHRCQQPIGTKSFIPKDNQNFCVPCYEK 63 (72)
T ss_dssp TCCSSSCCCCCSSSEEEETTEEEEHHHHHH
T ss_pred CcccccCCccCCCccCccCCeEECHHHHhH
Confidence 455566555543322223555666655544
No 227
>2elx_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=28.70 E-value=40 Score=17.77 Aligned_cols=25 Identities=24% Similarity=0.430 Sum_probs=17.7
Q ss_pred ccccCCCCCCCCcccc-ChhHHHHHhhhcC
Q 046177 143 RPYNCPYAGSECTVMG-DIPYLVAHLKDDH 171 (272)
Q Consensus 143 ~~~~CP~~~~~C~~~g-~~~~l~~Hl~~~H 171 (272)
+++.|+. |+... ....|..|....+
T Consensus 6 k~~~C~~----C~k~f~~~~~L~~H~~~h~ 31 (35)
T 2elx_A 6 SGYVCAL----CLKKFVSSIRLRSHIREVH 31 (35)
T ss_dssp CSEECSS----SCCEESSHHHHHHHHHHTS
T ss_pred CCeECCC----CcchhCCHHHHHHHHHHHc
Confidence 5778886 76665 4578899987644
No 228
>2dlo_A Thyroid receptor-interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=28.70 E-value=22 Score=24.22 Aligned_cols=24 Identities=21% Similarity=0.509 Sum_probs=14.0
Q ss_pred CceeccCcccccCCCCCCcccCCC
Q 046177 76 GHTLCSGCKPRVHNRCPTCRHELG 99 (272)
Q Consensus 76 GH~~C~~C~~~~~~~CP~Cr~~~~ 99 (272)
|..+|..|.......|+.|..+|.
T Consensus 3 g~~yC~~~y~~~~~~C~~C~~~I~ 26 (81)
T 2dlo_A 3 SGSSGEGCYVATLEKCATCSQPIL 26 (81)
T ss_dssp CCCCCCCCCCSSCCBCTTTCCBCC
T ss_pred CCEECHHHhhcCCCccccCCCeec
Confidence 455666665543456666666654
No 229
>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=28.55 E-value=24 Score=24.27 Aligned_cols=10 Identities=20% Similarity=0.654 Sum_probs=4.8
Q ss_pred eeccccccCc
Q 046177 58 ECPVCLNAMY 67 (272)
Q Consensus 58 ~CpiC~~~l~ 67 (272)
.|+.|...+.
T Consensus 17 ~C~~C~~~I~ 26 (80)
T 2dj7_A 17 HCAGCKEEIK 26 (80)
T ss_dssp CCTTTCCCCS
T ss_pred CCcCcCCeeC
Confidence 4555555443
No 230
>1sp2_A SP1F2; zinc finger, transcription activation; NMR {Homo sapiens} SCOP: g.37.1.1 PDB: 1va2_A
Probab=28.52 E-value=52 Score=16.83 Aligned_cols=24 Identities=21% Similarity=0.409 Sum_probs=15.9
Q ss_pred cccCCCCCCCCcccc-ChhHHHHHhhh
Q 046177 144 PYNCPYAGSECTVMG-DIPYLVAHLKD 169 (272)
Q Consensus 144 ~~~CP~~~~~C~~~g-~~~~l~~Hl~~ 169 (272)
|+.|+.. .|+... ....|..|+..
T Consensus 2 p~~C~~~--~C~k~f~~~~~L~~H~~~ 26 (31)
T 1sp2_A 2 PFMCTWS--YCGKRFTRSDELQRHKRT 26 (31)
T ss_dssp CCBCCST--TCCCBCSSHHHHHHHHTT
T ss_pred CcCCcCC--CCCcccCCHhHHHHHHHH
Confidence 6778732 377765 45688888764
No 231
>1wys_A Riken cDNA 2310008M20 protein; ZF-AN1 domain, zinc binding, NPPSFA, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus}
Probab=28.48 E-value=31 Score=24.08 Aligned_cols=36 Identities=19% Similarity=0.578 Sum_probs=26.7
Q ss_pred eeecc--ccccCcCCccccc-CCceeccCcccccCCCCCC
Q 046177 57 LECPV--CLNAMYPPIHQCS-NGHTLCSGCKPRVHNRCPT 93 (272)
Q Consensus 57 l~Cpi--C~~~l~~Pv~qC~-cGH~~C~~C~~~~~~~CP~ 93 (272)
-.|.. |...-.-|+ .|. |+.+||..=+..-...||.
T Consensus 15 ~~Cs~~~C~~~dflpf-~C~~C~~~FC~~HR~~e~H~C~~ 53 (75)
T 1wys_A 15 QHCQVQHCRQRDFLPF-VCDGCSGIFCLEHRSKDSHGCSE 53 (75)
T ss_dssp CCCSCTTTCCCSCCCE-ECTTTCCEECSTTCSSGGGTCCC
T ss_pred CCcCcccCCCccceee-ECcccCcCcCcccCCccccCCCC
Confidence 47888 998877785 898 9999998655444456764
No 232
>2iyb_E Testin, TESS, TES; LIM domain, SH3-binding, tumour supressor LIM domain EVH1 DO cell motility, phosphorylation, cytoskeleton; 2.35A {Homo sapiens}
Probab=28.23 E-value=16 Score=23.92 Aligned_cols=32 Identities=25% Similarity=0.559 Sum_probs=19.5
Q ss_pred CeeeeccccccCcCCcccccCCceec-cCcccc
Q 046177 55 ELLECPVCLNAMYPPIHQCSNGHTLC-SGCKPR 86 (272)
Q Consensus 55 ~~l~CpiC~~~l~~Pv~qC~cGH~~C-~~C~~~ 86 (272)
+=|.|..|...|..--+.-..|..+| ..|..+
T Consensus 31 ~CF~C~~C~~~L~~~~f~~~~g~~yC~~~C~~k 63 (65)
T 2iyb_E 31 ECFLCSCCSKCLIGQKFMPVEGMVFCSVECKKR 63 (65)
T ss_dssp TTSBCTTTCCBCTTSCCEEETTEEESSHHHHHT
T ss_pred CCEECCCCCCcCCCCceEEECCEEecCHHHhhh
Confidence 44677777777754322225677777 666544
No 233
>2m0e_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=27.62 E-value=32 Score=16.98 Aligned_cols=23 Identities=35% Similarity=0.489 Sum_probs=14.6
Q ss_pred cccCCCCCCCCcccc-ChhHHHHHhhhc
Q 046177 144 PYNCPYAGSECTVMG-DIPYLVAHLKDD 170 (272)
Q Consensus 144 ~~~CP~~~~~C~~~g-~~~~l~~Hl~~~ 170 (272)
|+.|+. |+... ....|..|....
T Consensus 2 ~~~C~~----C~~~f~~~~~l~~H~~~h 25 (29)
T 2m0e_A 2 EHKCPH----CDKKFNQVGNLKAHLKIH 25 (29)
T ss_dssp CCCCSS----CCCCCCTTTHHHHHHHHH
T ss_pred CCcCCC----CCcccCCHHHHHHHHHHh
Confidence 567776 65554 345788887653
No 234
>1flk_A TNF receptor associated factor 3; TNF signaling, TRAF3, CD40-binding protein, apoptosis; 2.80A {Homo sapiens} SCOP: b.8.1.1 h.1.2.1 PDB: 1fll_A
Probab=26.93 E-value=16 Score=30.73 Aligned_cols=14 Identities=7% Similarity=-0.137 Sum_probs=0.0
Q ss_pred CCcccccCCCCcee
Q 046177 115 LPCKYQSYGCMGIY 128 (272)
Q Consensus 115 v~C~~~~~GC~~~~ 128 (272)
+.|++...||...+
T Consensus 10 i~c~~~~~gc~~~~ 23 (228)
T 1flk_A 10 MKSSVESLQNRVTE 23 (228)
T ss_dssp --------------
T ss_pred eeccccccCceeec
Confidence 34444444444444
No 235
>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription; NMR {Mus musculus} SCOP: g.37.1.1
Probab=26.82 E-value=50 Score=17.44 Aligned_cols=25 Identities=28% Similarity=0.449 Sum_probs=17.7
Q ss_pred ccccCCCCCCCCcccc-ChhHHHHHhhhcC
Q 046177 143 RPYNCPYAGSECTVMG-DIPYLVAHLKDDH 171 (272)
Q Consensus 143 ~~~~CP~~~~~C~~~g-~~~~l~~Hl~~~H 171 (272)
+++.|+. |+... ....|..|+...+
T Consensus 6 k~~~C~~----C~k~f~~~~~l~~H~~~H~ 31 (35)
T 1srk_A 6 RPFVCRI----CLSAFTTKANCARHLKVHT 31 (35)
T ss_dssp SCEECSS----SCCEESSHHHHHHHHGGGT
T ss_pred cCeeCCC----CCcccCCHHHHHHHHHHcC
Confidence 5778876 77665 4578899976543
No 236
>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc finger, dimer, protein-DNA complex, cooperativity, transcription/DNA complex; 2.35A {Mus musculus} SCOP: g.37.1.1 g.37.1.1
Probab=26.61 E-value=48 Score=21.23 Aligned_cols=49 Identities=16% Similarity=0.317 Sum_probs=30.2
Q ss_pred CCcccccCCCCceeccC-cHHhhhhc-CCCccccCCCCCCCCcccc-ChhHHHHHhhh
Q 046177 115 LPCKYQSYGCMGIYPYY-SKLKHESQ-CIFRPYNCPYAGSECTVMG-DIPYLVAHLKD 169 (272)
Q Consensus 115 v~C~~~~~GC~~~~~~~-~~~~He~~-C~~~~~~CP~~~~~C~~~g-~~~~l~~Hl~~ 169 (272)
+.|+. .+|...+... .+..|+.. -.-.++.|+. |+... ....|..|++.
T Consensus 20 ~~C~~--~~C~k~f~~~~~l~~H~~~h~~~~~~~C~~----C~~~f~~~~~l~~H~~~ 71 (73)
T 1f2i_G 20 YACPV--ESCDRRFSRSDELTRHIRIHTGQKPFQCRI----CMRNFSRSDHLTTHIRT 71 (73)
T ss_dssp EECSS--TTBCCEESSHHHHHHHHHHHHCCCCEECTT----TCCEESCHHHHHHHHTT
T ss_pred cCCcC--CCCCCccCCHHHHHHHHHhhCCCCCeECCC----CCchhCCHHHHHHHHHh
Confidence 45542 2476666543 45677652 3446788987 76665 45688888754
No 237
>2m0d_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=26.52 E-value=51 Score=16.27 Aligned_cols=23 Identities=35% Similarity=0.719 Sum_probs=15.8
Q ss_pred ccccCCCCCCCCcccc-ChhHHHHHhhh
Q 046177 143 RPYNCPYAGSECTVMG-DIPYLVAHLKD 169 (272)
Q Consensus 143 ~~~~CP~~~~~C~~~g-~~~~l~~Hl~~ 169 (272)
+++.|+. |+... ....|..|...
T Consensus 2 k~~~C~~----C~~~f~~~~~l~~H~~~ 25 (30)
T 2m0d_A 2 KPYQCDY----CGRSFSDPTSKMRHLET 25 (30)
T ss_dssp CCEECTT----TCCEESCHHHHHHHHHT
T ss_pred cCccCCC----CCcccCCHHHHHHHHHH
Confidence 4677876 76655 45678889765
No 238
>2cr8_A MDM4 protein; ZF-ranbp domain, P53-binding protein MDM4, MDM2-like P53-binding DE protein, MDMX protein, double minute 4 protein; NMR {Homo sapiens} SCOP: g.41.11.1
Probab=26.34 E-value=44 Score=21.55 Aligned_cols=30 Identities=23% Similarity=0.494 Sum_probs=21.9
Q ss_pred ccCCCCeeeeccccccCcCCcccccCCceeccCcccc
Q 046177 50 SSSVRELLECPVCLNAMYPPIHQCSNGHTLCSGCKPR 86 (272)
Q Consensus 50 ~~~~~~~l~CpiC~~~l~~Pv~qC~cGH~~C~~C~~~ 86 (272)
.+..++...|+-|. .+.+|+ +.+|..|..-
T Consensus 5 ~~~~eD~WkC~~C~-k~N~Pl------~ryC~rCwaL 34 (53)
T 2cr8_A 5 SSGSEDEWQCTECK-KFNSPS------KRYCFRCWAL 34 (53)
T ss_dssp SSCCSCCEECSSSC-CEECSS------CCBCTTTCCB
T ss_pred cCCCcceeeccccc-ccCCCc------cchhHHHHHh
Confidence 45667889999999 467775 4577888654
No 239
>2elq_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=25.98 E-value=49 Score=17.68 Aligned_cols=23 Identities=26% Similarity=0.696 Sum_probs=16.7
Q ss_pred ccccCCCCCCCCcccc-ChhHHHHHhhh
Q 046177 143 RPYNCPYAGSECTVMG-DIPYLVAHLKD 169 (272)
Q Consensus 143 ~~~~CP~~~~~C~~~g-~~~~l~~Hl~~ 169 (272)
+++.|+. |+... ....|..|+..
T Consensus 8 k~~~C~~----C~k~f~~~~~l~~H~~~ 31 (36)
T 2elq_A 8 KPFKCSL----CEYATRSKSNLKAHMNR 31 (36)
T ss_dssp CSEECSS----SSCEESCHHHHHHHHHH
T ss_pred CCccCCC----CCchhCCHHHHHHHHHH
Confidence 5788886 77666 45688889765
No 240
>2kvg_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=25.83 E-value=35 Score=17.05 Aligned_cols=23 Identities=30% Similarity=0.827 Sum_probs=15.0
Q ss_pred ccccCCCCCCCCcccc-ChhHHHHHhhh
Q 046177 143 RPYNCPYAGSECTVMG-DIPYLVAHLKD 169 (272)
Q Consensus 143 ~~~~CP~~~~~C~~~g-~~~~l~~Hl~~ 169 (272)
+|+.|+. |+... ....|..|...
T Consensus 2 k~~~C~~----C~k~f~~~~~l~~H~~~ 25 (27)
T 2kvg_A 2 APYRCPL----CRAGCPSLASMQAHMRG 25 (27)
T ss_dssp CTEEETT----TTEEESCHHHHHHHHTT
T ss_pred cCcCCCC----CCcccCCHHHHHHHHHh
Confidence 3677875 66655 45678888653
No 241
>2elm_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=25.68 E-value=54 Score=17.87 Aligned_cols=26 Identities=23% Similarity=0.455 Sum_probs=18.0
Q ss_pred ccccCCCCCCCCcccc-ChhHHHHHhhhcCC
Q 046177 143 RPYNCPYAGSECTVMG-DIPYLVAHLKDDHK 172 (272)
Q Consensus 143 ~~~~CP~~~~~C~~~g-~~~~l~~Hl~~~H~ 172 (272)
+|+.|+. |+... ....|..|....|.
T Consensus 8 k~~~C~~----C~k~f~~~~~L~~H~~~~H~ 34 (37)
T 2elm_A 8 HLYYCSQ----CHYSSITKNCLKRHVIQKHS 34 (37)
T ss_dssp CEEECSS----SSCEEECHHHHHHHHHHHTC
T ss_pred cCeECCC----CCcccCCHHHHHHHHHHHcc
Confidence 5788986 77765 55788999444554
No 242
>2k5r_A Uncharacterized protein XF2673; solution structure, structural genomics, PSI-2, protein structure initiative; NMR {Xylella fastidiosa TEMECULA1}
Probab=25.14 E-value=35 Score=24.98 Aligned_cols=17 Identities=18% Similarity=0.176 Sum_probs=13.9
Q ss_pred cCCCCeeeeccccccCc
Q 046177 51 SSVRELLECPVCLNAMY 67 (272)
Q Consensus 51 ~~~~~~l~CpiC~~~l~ 67 (272)
..+.+.|.||+|...|.
T Consensus 3 ~~LLdILaCP~cK~pL~ 19 (97)
T 2k5r_A 3 RKLLHLLCSPDTRQPLS 19 (97)
T ss_dssp TTTCSSCCCCTTSSCCE
T ss_pred hHHhhheECCCCCCccc
Confidence 45778999999998764
No 243
>4rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.20A {Clostridium pasteurianum} SCOP: g.41.5.1 PDB: 5rxn_A 1bfy_A 1fhh_A 1fhm_A 1irn_A 1iro_A 1r0f_A 1r0g_A 1r0h_A 1r0i_A 1r0j_A 1t9q_A 1c09_A 1b2j_A 1b13_A 1smm_A 1smu_A 1smw_A 1be7_A 1t9o_A ...
Probab=25.06 E-value=33 Score=22.29 Aligned_cols=20 Identities=20% Similarity=0.534 Sum_probs=14.5
Q ss_pred CCcccccCCCCeeeecccccc
Q 046177 45 PNLTVSSSVRELLECPVCLNA 65 (272)
Q Consensus 45 ~~~~~~~~~~~~l~CpiC~~~ 65 (272)
+++.+ +++++.+.||+|...
T Consensus 26 pGt~f-e~lP~dw~CP~Cg~~ 45 (54)
T 4rxn_A 26 PGTDF-KDIPDDWVCPLCGVG 45 (54)
T ss_dssp TTCCG-GGSCTTCBCTTTCCB
T ss_pred CCCCh-hHCCCCCcCcCCCCc
Confidence 33444 567889999999764
No 244
>1flk_A TNF receptor associated factor 3; TNF signaling, TRAF3, CD40-binding protein, apoptosis; 2.80A {Homo sapiens} SCOP: b.8.1.1 h.1.2.1 PDB: 1fll_A
Probab=24.36 E-value=19 Score=30.22 Aligned_cols=23 Identities=13% Similarity=-0.049 Sum_probs=8.4
Q ss_pred CCCCCCCCcccc-----ChhHHHHHhhh
Q 046177 147 CPYAGSECTVMG-----DIPYLVAHLKD 169 (272)
Q Consensus 147 CP~~~~~C~~~g-----~~~~l~~Hl~~ 169 (272)
||+...+|.+.+ .+.+|.+|+..
T Consensus 12 c~~~~~gc~~~~~~~~~~r~~~~~h~~~ 39 (228)
T 1flk_A 12 SSVESLQNRVTELESVDKSAGQVARNTG 39 (228)
T ss_dssp ------------CTTTTTTTTTHHHHHH
T ss_pred ccccccCceeeccccccchhHHHHHHHH
Confidence 444444566666 77888888764
No 245
>1b8t_A Protein (CRP1); LIM domain, muscle differentiation, contractIle; NMR {Gallus gallus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 1ibi_A 1qli_A 1cxx_A 1ctl_A 2o13_A
Probab=24.25 E-value=22 Score=28.81 Aligned_cols=43 Identities=12% Similarity=0.259 Sum_probs=31.9
Q ss_pred CCeeeeccccccCcCCcccccCCceeccCccccc-CCCCCCccc
Q 046177 54 RELLECPVCLNAMYPPIHQCSNGHTLCSGCKPRV-HNRCPTCRH 96 (272)
Q Consensus 54 ~~~l~CpiC~~~l~~Pv~qC~cGH~~C~~C~~~~-~~~CP~Cr~ 96 (272)
.+=|.|..|...|..-.+.-..|..+|..|..+. ..+|..|..
T Consensus 32 ~~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~f~~~c~~c~~ 75 (192)
T 1b8t_A 32 KSCFLCMVCKKNLDSTTVAVHGDEIYCKSCYGKKYGPKGKGKGM 75 (192)
T ss_dssp TTTCBCTTTCCBCCSSSEEEETTEEEEHHHHHHHHSCCCCCCCC
T ss_pred CCCCcCcccCCcCCCCeeEecCCEeeChhhhHhhcCcccccccc
Confidence 3568999999998765334368999999998875 456766654
No 246
>2m0f_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=24.16 E-value=42 Score=16.56 Aligned_cols=22 Identities=27% Similarity=0.374 Sum_probs=15.1
Q ss_pred cccCCCCCCCCcccc-ChhHHHHHhhh
Q 046177 144 PYNCPYAGSECTVMG-DIPYLVAHLKD 169 (272)
Q Consensus 144 ~~~CP~~~~~C~~~g-~~~~l~~Hl~~ 169 (272)
++.|+. |+... ....|..|...
T Consensus 2 ~~~C~~----C~k~f~~~~~l~~H~~~ 24 (29)
T 2m0f_A 2 PLKCRE----CGKQFTTSGNLKRHLRI 24 (29)
T ss_dssp CEECTT----TSCEESCHHHHHHHHHH
T ss_pred CccCCC----CCCccCChhHHHHHHHH
Confidence 567876 76655 45688888765
No 247
>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=24.08 E-value=50 Score=17.53 Aligned_cols=23 Identities=35% Similarity=0.811 Sum_probs=16.6
Q ss_pred ccccCCCCCCCCcccc-ChhHHHHHhhh
Q 046177 143 RPYNCPYAGSECTVMG-DIPYLVAHLKD 169 (272)
Q Consensus 143 ~~~~CP~~~~~C~~~g-~~~~l~~Hl~~ 169 (272)
.++.|+. |+... ....|..|+..
T Consensus 8 k~~~C~~----C~k~f~~~~~l~~H~~~ 31 (36)
T 2elt_A 8 KPYKCPQ----CSYASAIKANLNVHLRK 31 (36)
T ss_dssp CSEECSS----SSCEESSHHHHHHHHHH
T ss_pred CCCCCCC----CCcccCCHHHHHHHHHH
Confidence 5788886 77665 45688899765
No 248
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=23.97 E-value=1.6e+02 Score=19.86 Aligned_cols=45 Identities=22% Similarity=0.458 Sum_probs=26.1
Q ss_pred CCCeeeeccccccCcCCccccc---CC-ceeccCccccc-----CCCCCCcccCC
Q 046177 53 VRELLECPVCLNAMYPPIHQCS---NG-HTLCSGCKPRV-----HNRCPTCRHEL 98 (272)
Q Consensus 53 ~~~~l~CpiC~~~l~~Pv~qC~---cG-H~~C~~C~~~~-----~~~CP~Cr~~~ 98 (272)
..+...| +|..+-...+++|. |. ..|=..|+.-. .-.||.|+...
T Consensus 13 ~~~~~~C-~C~~~~~g~MI~CD~~~C~~~wfH~~Cvgl~~~p~g~w~Cp~C~~~~ 66 (71)
T 1wen_A 13 PNEPTYC-LCHQVSYGEMIGCDNPDCSIEWFHFACVGLTTKPRGKWFCPRCSQES 66 (71)
T ss_dssp TTSCCCS-TTCCCSCSSEECCSCSSCSCCCEETTTTTCSSCCSSCCCCTTTSSCS
T ss_pred CCCCCEE-ECCCCCCCCEeEeeCCCCCCccEecccCCcCcCCCCCEECCCCCccc
Confidence 3456678 89987666666776 33 23434454321 24688886643
No 249
>1zfd_A SWI5; DNA binding motif, zinc finger DNA binding domain; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1
Probab=23.76 E-value=68 Score=16.41 Aligned_cols=25 Identities=32% Similarity=0.535 Sum_probs=15.9
Q ss_pred ccccCCCCCCCCcccc-ChhHHHHHhhh
Q 046177 143 RPYNCPYAGSECTVMG-DIPYLVAHLKD 169 (272)
Q Consensus 143 ~~~~CP~~~~~C~~~g-~~~~l~~Hl~~ 169 (272)
+|+.|+.. .|+... ....|..|+..
T Consensus 2 k~~~C~~~--~C~k~f~~~~~L~~H~~~ 27 (32)
T 1zfd_A 2 RPYSCDHP--GCDKAFVRNHDLIRHKKS 27 (32)
T ss_dssp CSBCCCCT--TCCCCBSSSHHHHHHHGG
T ss_pred CCCcCcCC--CCCCccCCHHHHHHHHHH
Confidence 46778732 276655 45688889765
No 250
>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=23.73 E-value=53 Score=17.52 Aligned_cols=24 Identities=29% Similarity=0.498 Sum_probs=16.8
Q ss_pred ccccCCCCCCCCcccc-ChhHHHHHhhhc
Q 046177 143 RPYNCPYAGSECTVMG-DIPYLVAHLKDD 170 (272)
Q Consensus 143 ~~~~CP~~~~~C~~~g-~~~~l~~Hl~~~ 170 (272)
.++.|+. |+... ....|..|+...
T Consensus 8 k~~~C~~----C~k~f~~~~~l~~H~~~H 32 (36)
T 2els_A 8 KIFTCEY----CNKVFKFKHSLQAHLRIH 32 (36)
T ss_dssp CCEECTT----TCCEESSHHHHHHHHHHH
T ss_pred CCEECCC----CCceeCCHHHHHHHHHHh
Confidence 5778886 76665 456888897653
No 251
>1x3h_A Leupaxin; paxillin family, protein-protein interaction, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=23.41 E-value=32 Score=23.23 Aligned_cols=30 Identities=13% Similarity=0.287 Sum_probs=13.4
Q ss_pred eeeccccccCcCCcccccCCceeccCcccc
Q 046177 57 LECPVCLNAMYPPIHQCSNGHTLCSGCKPR 86 (272)
Q Consensus 57 l~CpiC~~~l~~Pv~qC~cGH~~C~~C~~~ 86 (272)
|.|..|...|..--+.-..|..+|..|..+
T Consensus 42 F~C~~C~~~L~~~~~~~~~~~~yC~~~y~~ 71 (80)
T 1x3h_A 42 FVCGDCFTSFSTGSFFELDGRPFCELHYHH 71 (80)
T ss_dssp CBCSSSCCBSCSSCCEESSSCEECHHHHHH
T ss_pred CChhhCCCCCCCCcEEeECCEEECHHHHHH
Confidence 455555555543211113455555555443
No 252
>1rim_A E6APC2 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1
Probab=23.31 E-value=60 Score=17.18 Aligned_cols=23 Identities=22% Similarity=0.385 Sum_probs=15.8
Q ss_pred cccCCCCCCCCcccc-ChhHHHHHhhhc
Q 046177 144 PYNCPYAGSECTVMG-DIPYLVAHLKDD 170 (272)
Q Consensus 144 ~~~CP~~~~~C~~~g-~~~~l~~Hl~~~ 170 (272)
|+.|+. |+... ....|..|+...
T Consensus 2 p~~C~~----C~k~F~~~~~L~~H~~~H 25 (33)
T 1rim_A 2 KFACPE----CPKRFMRSDHLSKHITLH 25 (33)
T ss_dssp CCCCSS----SCCCCSSHHHHHHHHHHH
T ss_pred cccCCC----CCchhCCHHHHHHHHHHh
Confidence 567875 66654 456889997653
No 253
>1j2o_A FLIN2, fusion of rhombotin-2 and LIM domain-binding protein 1; LIM-interaction-domain (LID), metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=23.28 E-value=28 Score=25.58 Aligned_cols=39 Identities=18% Similarity=0.253 Sum_probs=23.2
Q ss_pred CeeeeccccccCcC---CcccccCCceeccCccccc-CCCCCCc
Q 046177 55 ELLECPVCLNAMYP---PIHQCSNGHTLCSGCKPRV-HNRCPTC 94 (272)
Q Consensus 55 ~~l~CpiC~~~l~~---Pv~qC~cGH~~C~~C~~~~-~~~CP~C 94 (272)
+-|.|..|...|.. +.+. ..|..+|..|..+. ...|-.|
T Consensus 29 ~CF~C~~C~~~L~~~g~~~~~-~~g~~yC~~~y~~~f~~~c~~c 71 (114)
T 1j2o_A 29 DCLSCDLCGCRLGEVGRRLYY-KLGRKLCRRDYLRLGGSGGHMG 71 (114)
T ss_dssp TTCCCSSSCSCCCCSSSCCCC-BTTBCCCHHHHHHHHTSCCSSC
T ss_pred hcCcccccCCchhcCCCeeEE-ECCeeechHHHHHHhCcccCcC
Confidence 44677777777753 3333 56777777776654 3444434
No 254
>2kdx_A HYPA, hydrogenase/urease nickel incorporation protein HYPA; metallochaperone, metal-binding, metal- binding protein; NMR {Helicobacter pylori}
Probab=23.21 E-value=48 Score=24.71 Aligned_cols=9 Identities=22% Similarity=0.711 Sum_probs=7.0
Q ss_pred CCCCcccCC
Q 046177 90 RCPTCRHEL 98 (272)
Q Consensus 90 ~CP~Cr~~~ 98 (272)
.||.|..+.
T Consensus 92 ~CP~Cgs~~ 100 (119)
T 2kdx_A 92 VCEKCHSKN 100 (119)
T ss_dssp CCSSSSSCC
T ss_pred cCccccCCC
Confidence 789998764
No 255
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=23.17 E-value=35 Score=23.24 Aligned_cols=32 Identities=22% Similarity=0.499 Sum_probs=23.7
Q ss_pred CCCeeeeccccccCcCCccccc-C-CceeccCccccc
Q 046177 53 VRELLECPVCLNAMYPPIHQCS-N-GHTLCSGCKPRV 87 (272)
Q Consensus 53 ~~~~l~CpiC~~~l~~Pv~qC~-c-GH~~C~~C~~~~ 87 (272)
.+++--|-||.+- ..+.|. | |-+||..|+...
T Consensus 5 ~ee~pWC~ICneD---AtlrC~gCdgDLYC~rC~rE~ 38 (67)
T 2d8v_A 5 SSGLPWCCICNED---ATLRCAGCDGDLYCARCFREG 38 (67)
T ss_dssp CCCCSSCTTTCSC---CCEEETTTTSEEECSSHHHHH
T ss_pred CcCCCeeEEeCCC---CeEEecCCCCceehHHHHHHH
Confidence 3455568899876 446776 7 889999998875
No 256
>2l7x_A Envelope glycoprotein; cytoplasmic tail, viral protein; NMR {Crimean-congo hemorrhagic fever virus}
Probab=22.98 E-value=84 Score=21.59 Aligned_cols=19 Identities=21% Similarity=0.315 Sum_probs=8.8
Q ss_pred CCceeccCcHHhhhhcCCC
Q 046177 124 CMGIYPYYSKLKHESQCIF 142 (272)
Q Consensus 124 C~~~~~~~~~~~He~~C~~ 142 (272)
|.-.++-..+..|...||.
T Consensus 36 C~nRls~eGl~RHV~~CPK 54 (77)
T 2l7x_A 36 CASRLTSDGLARHVTQCPK 54 (77)
T ss_dssp TCCCCCTTTHHHHHTTCSH
T ss_pred hhccCCccchhhhcccCcc
Confidence 4444444444455444443
No 257
>1e8j_A Rubredoxin; iron-sulfur-protein, zinc-substitution, thermostability; NMR {Desulfovibrio gigas} SCOP: g.41.5.1 PDB: 1rdg_A 2dsx_A 1spw_A
Probab=22.88 E-value=38 Score=21.76 Aligned_cols=15 Identities=27% Similarity=0.667 Sum_probs=12.3
Q ss_pred cCCCCeeeecccccc
Q 046177 51 SSVRELLECPVCLNA 65 (272)
Q Consensus 51 ~~~~~~l~CpiC~~~ 65 (272)
+++.+.+.||+|...
T Consensus 31 ~~lP~dw~CP~Cg~~ 45 (52)
T 1e8j_A 31 EDLPDDWACPVCGAS 45 (52)
T ss_dssp TSSCTTCCCSSSCCC
T ss_pred HHCCCCCcCCCCCCc
Confidence 667889999999863
No 258
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens}
Probab=22.80 E-value=18 Score=33.00 Aligned_cols=32 Identities=22% Similarity=0.602 Sum_probs=0.0
Q ss_pred CeeeeccccccCcCC--ccccc-CCceeccCcccc
Q 046177 55 ELLECPVCLNAMYPP--IHQCS-NGHTLCSGCKPR 86 (272)
Q Consensus 55 ~~l~CpiC~~~l~~P--v~qC~-cGH~~C~~C~~~ 86 (272)
+.-.|..|...+..- -.-|. ||++||..|...
T Consensus 374 ~~~~c~~c~~~f~~~~r~h~Cr~Cg~~~C~~Cs~~ 408 (434)
T 3mpx_A 374 HVMMCMNCGCDFSLTLRRHHCHACGKIVCRNCSRN 408 (434)
T ss_dssp -----------------------------------
T ss_pred cCCcCCCcCCCCCCcchhhhcccCcCEeehhhCCC
Confidence 345799999877522 23576 999999999754
No 259
>1yk4_A Rubredoxin, RD; electron transport; 0.69A {Pyrococcus abyssi} PDB: 2pya_A 1yk5_A 1bq8_A 1bq9_A* 3kyu_A 3kyv_A 3kyw_A 3kyx_A 3kyy_A 3ryg_A 3rz6_A 3rzt_A 3ss2_A 1brf_A 1caa_A 1cad_A 1vcx_A 1zrp_A 1iu5_A 1iu6_A ...
Probab=22.70 E-value=40 Score=21.67 Aligned_cols=15 Identities=20% Similarity=0.572 Sum_probs=12.2
Q ss_pred cCCCCeeeecccccc
Q 046177 51 SSVRELLECPVCLNA 65 (272)
Q Consensus 51 ~~~~~~l~CpiC~~~ 65 (272)
+++.+.+.||+|...
T Consensus 30 ~~lP~dw~CP~Cg~~ 44 (52)
T 1yk4_A 30 EDLPDDWVCPLCGAP 44 (52)
T ss_dssp GGSCTTCBCTTTCCB
T ss_pred hHCCCCCcCCCCCCC
Confidence 567889999999763
No 260
>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=22.67 E-value=82 Score=17.47 Aligned_cols=24 Identities=29% Similarity=0.623 Sum_probs=16.8
Q ss_pred ccccCCCCCCCCcccc-ChhHHHHHhhhc
Q 046177 143 RPYNCPYAGSECTVMG-DIPYLVAHLKDD 170 (272)
Q Consensus 143 ~~~~CP~~~~~C~~~g-~~~~l~~Hl~~~ 170 (272)
+++.|+. |+... ....|..|+...
T Consensus 10 k~~~C~~----C~k~f~~~~~L~~H~~~H 34 (42)
T 2eos_A 10 KPYPCEI----CGTRFRHLQTLKSHLRIH 34 (42)
T ss_dssp CCBCCSS----SCCCBSSHHHHHHHTTTT
T ss_pred CCEECCC----CCCccCCHHHHHHHHHhc
Confidence 5778886 66665 456888897653
No 261
>2ept_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=22.61 E-value=83 Score=17.31 Aligned_cols=24 Identities=25% Similarity=0.320 Sum_probs=16.8
Q ss_pred ccccCCCCCCCCcccc-ChhHHHHHhhhc
Q 046177 143 RPYNCPYAGSECTVMG-DIPYLVAHLKDD 170 (272)
Q Consensus 143 ~~~~CP~~~~~C~~~g-~~~~l~~Hl~~~ 170 (272)
+++.|+. |+... ....|..|+...
T Consensus 9 k~~~C~~----C~k~f~~~~~L~~H~~~H 33 (41)
T 2ept_A 9 RVYECQE----CGKSFRQKGSLTLHERIH 33 (41)
T ss_dssp CCEECSS----SCCEESSHHHHHHHGGGC
T ss_pred CCeECCC----CCCCcCCHHHHHHHHHHh
Confidence 5778886 76665 456888997653
No 262
>1lko_A Rubrerythrin all-iron(II) form; reduced form, DIIRON, four-helix bundle, rubre like, electron transport; 1.63A {Desulfovibrio vulgaris} SCOP: a.25.1.1 g.41.5.1 PDB: 1dvb_A 1jyb_A 1b71_A 1lkm_A 1lkp_A 1qyb_A 1s2z_A 1s30_A 1ryt_A
Probab=22.53 E-value=26 Score=28.63 Aligned_cols=9 Identities=44% Similarity=1.287 Sum_probs=6.8
Q ss_pred CCCCCcccC
Q 046177 89 NRCPTCRHE 97 (272)
Q Consensus 89 ~~CP~Cr~~ 97 (272)
..||.|..+
T Consensus 172 ~~CP~C~~~ 180 (191)
T 1lko_A 172 ELCPACAHP 180 (191)
T ss_dssp SBCTTTCCB
T ss_pred CCCCCCcCC
Confidence 378888775
No 263
>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=22.48 E-value=81 Score=18.03 Aligned_cols=23 Identities=30% Similarity=0.492 Sum_probs=16.2
Q ss_pred ccccCCCCCCCCcccc-ChhHHHHHhhh
Q 046177 143 RPYNCPYAGSECTVMG-DIPYLVAHLKD 169 (272)
Q Consensus 143 ~~~~CP~~~~~C~~~g-~~~~l~~Hl~~ 169 (272)
+++.|+. |+... ....|..|+..
T Consensus 11 k~~~C~~----C~k~f~~~~~L~~H~~~ 34 (46)
T 2eon_A 11 KPYKCQV----CGKAFRVSSHLVQHHSV 34 (46)
T ss_dssp CSCBCSS----SCCBCSSHHHHHHHTTT
T ss_pred cccCCCC----CCcccCcHHHHHHHHHh
Confidence 5778876 76665 45688888765
No 264
>2elo_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=22.15 E-value=47 Score=17.87 Aligned_cols=25 Identities=32% Similarity=0.737 Sum_probs=17.8
Q ss_pred ccccCCCCCCCCcccc-ChhHHHHHhhhcC
Q 046177 143 RPYNCPYAGSECTVMG-DIPYLVAHLKDDH 171 (272)
Q Consensus 143 ~~~~CP~~~~~C~~~g-~~~~l~~Hl~~~H 171 (272)
+++.|+. |+... ....|..|....+
T Consensus 8 k~~~C~~----C~k~f~~~~~l~~H~~~h~ 33 (37)
T 2elo_A 8 RSYSCPV----CEKSFSEDRLIKSHIKTNH 33 (37)
T ss_dssp CCCEETT----TTEECSSHHHHHHHHHHHC
T ss_pred CCcCCCC----CCCccCCHHHHHHHHHHHc
Confidence 5678876 77665 4568899987644
No 265
>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=22.01 E-value=63 Score=18.46 Aligned_cols=26 Identities=27% Similarity=0.505 Sum_probs=18.5
Q ss_pred ccccCCCCCCCCcccc-ChhHHHHHhhhcCC
Q 046177 143 RPYNCPYAGSECTVMG-DIPYLVAHLKDDHK 172 (272)
Q Consensus 143 ~~~~CP~~~~~C~~~g-~~~~l~~Hl~~~H~ 172 (272)
+++.|+. |+... ....|..|+...|.
T Consensus 11 k~~~C~~----C~k~F~~~~~L~~H~~~~H~ 37 (47)
T 2epx_A 11 KPYECIE----CGKAFIQNTSLIRHWRYYHT 37 (47)
T ss_dssp CSBCCSS----SCCCBSSHHHHHHHHTTTTT
T ss_pred CCEECCc----cCchhCChHHHHHHhHhhcC
Confidence 5788886 66665 45789999884554
No 266
>3ky9_A Proto-oncogene VAV; calponin homology domain, DBL homology domain, pleckst homology domain, C1 domain, guanine-nucleotide releasing FA metal-binding; 2.73A {Homo sapiens} PDB: 2d86_A
Probab=21.97 E-value=46 Score=31.82 Aligned_cols=38 Identities=21% Similarity=0.379 Sum_probs=28.2
Q ss_pred CCeeeeccccccCcC---Cccccc-CCceeccCcccccCCCCC
Q 046177 54 RELLECPVCLNAMYP---PIHQCS-NGHTLCSGCKPRVHNRCP 92 (272)
Q Consensus 54 ~~~l~CpiC~~~l~~---Pv~qC~-cGH~~C~~C~~~~~~~CP 92 (272)
..--.|.+|...+.. .-++|. ||-.+|+.|...+ ..|+
T Consensus 527 ~~~t~C~~C~~~l~gl~~qg~~C~~C~~~vHk~C~~~v-~~C~ 568 (587)
T 3ky9_A 527 EETTSCKACQMLLRGTFYQGYRCHRCRASAHKECLGRV-PPCG 568 (587)
T ss_dssp SSCCBCTTTCSBCCSSSCCEEEETTTCCEECSGGGGGS-CCC-
T ss_pred CCCcccccccccccccccCCcCCCCCCCccchhhhhcC-CCCC
Confidence 445689999998743 346787 9999999999886 3443
No 267
>2d8y_A Eplin protein; LIM domain, epithelial protein LOST in neoplasm, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=21.84 E-value=35 Score=23.84 Aligned_cols=10 Identities=30% Similarity=0.946 Sum_probs=4.7
Q ss_pred eeccccccCc
Q 046177 58 ECPVCLNAMY 67 (272)
Q Consensus 58 ~CpiC~~~l~ 67 (272)
.|..|...+.
T Consensus 17 ~C~~C~~~I~ 26 (91)
T 2d8y_A 17 TCVECQKTVY 26 (91)
T ss_dssp BCTTTCCBCC
T ss_pred cCccCCCccC
Confidence 4555554443
No 268
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=21.73 E-value=49 Score=22.64 Aligned_cols=31 Identities=23% Similarity=0.585 Sum_probs=15.3
Q ss_pred eeeccccccCcCCcccc--cCCceeccCccccc
Q 046177 57 LECPVCLNAMYPPIHQC--SNGHTLCSGCKPRV 87 (272)
Q Consensus 57 l~CpiC~~~l~~Pv~qC--~cGH~~C~~C~~~~ 87 (272)
|.|..|...|..-.+.. ..|.++|..|..++
T Consensus 43 F~C~~C~~~L~~~~~~~~~~~g~~yC~~~y~~~ 75 (82)
T 2co8_A 43 FRCHTCEATLWPGGYEQHPGDGHFYCLQHLPQT 75 (82)
T ss_dssp CBCSSSCCBCCTTSEECCTTTCCCEETTTCCCC
T ss_pred CEEcCCCCCcCCCceeEeCcCCEEEChHHHHhh
Confidence 55666655554332221 24556666655443
No 269
>1g47_A Pinch protein; LIM domain, Zn finger, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=21.63 E-value=21 Score=23.99 Aligned_cols=9 Identities=22% Similarity=0.770 Sum_probs=4.5
Q ss_pred eeccccccC
Q 046177 58 ECPVCLNAM 66 (272)
Q Consensus 58 ~CpiC~~~l 66 (272)
.|+.|...+
T Consensus 13 ~C~~C~~~I 21 (77)
T 1g47_A 13 TCERCKGGF 21 (77)
T ss_dssp BCSSSCCBC
T ss_pred CchhcCCcc
Confidence 455555544
No 270
>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=21.61 E-value=1.1e+02 Score=17.34 Aligned_cols=25 Identities=24% Similarity=0.371 Sum_probs=16.8
Q ss_pred CccccCCCCCCCCcccc-ChhHHHHHhhhc
Q 046177 142 FRPYNCPYAGSECTVMG-DIPYLVAHLKDD 170 (272)
Q Consensus 142 ~~~~~CP~~~~~C~~~g-~~~~l~~Hl~~~ 170 (272)
-+++.|+. |+... ....|..|+...
T Consensus 10 ~k~~~C~~----C~k~F~~~~~L~~H~~~H 35 (46)
T 2ytn_A 10 KKPYKCNE----CGKVFTQNSHLARHRGIH 35 (46)
T ss_dssp CSSCBCTT----TCCBCSSHHHHHHHGGGT
T ss_pred CcCeECCC----CCCeeCCHHHHHHHhhhc
Confidence 35678876 66655 456788887653
No 271
>3iuf_A Zinc finger protein UBI-D4; structural genomics consortium (SGC), C2H2, APO metal-binding, nucleus, phosphoprotein, transcription, TRAN regulation; 1.80A {Homo sapiens}
Probab=21.52 E-value=60 Score=19.17 Aligned_cols=26 Identities=31% Similarity=0.584 Sum_probs=19.1
Q ss_pred ccccCCCCCCCCcccc-ChhHHHHHhhhcCC
Q 046177 143 RPYNCPYAGSECTVMG-DIPYLVAHLKDDHK 172 (272)
Q Consensus 143 ~~~~CP~~~~~C~~~g-~~~~l~~Hl~~~H~ 172 (272)
+++.|+. |+... ....|..|+...|.
T Consensus 6 kp~~C~~----C~k~F~~~~~L~~H~~~~H~ 32 (48)
T 3iuf_A 6 KPYACDI----CGKRYKNRPGLSYHYAHSHL 32 (48)
T ss_dssp SCEECTT----TCCEESSHHHHHHHHHHSSC
T ss_pred cCEECCC----cCcccCCHHHHHHHhhhhcC
Confidence 5788986 77665 45689999885665
No 272
>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=21.20 E-value=1.1e+02 Score=16.76 Aligned_cols=23 Identities=39% Similarity=0.623 Sum_probs=16.4
Q ss_pred ccccCCCCCCCCcccc-ChhHHHHHhhh
Q 046177 143 RPYNCPYAGSECTVMG-DIPYLVAHLKD 169 (272)
Q Consensus 143 ~~~~CP~~~~~C~~~g-~~~~l~~Hl~~ 169 (272)
+++.|+. |+... ....|..|...
T Consensus 9 k~~~C~~----C~k~f~~~~~L~~H~~~ 32 (42)
T 2yte_A 9 KPYSCAE----CKETFSDNNRLVQHQKM 32 (42)
T ss_dssp CSCBCTT----TCCBCSSHHHHHHHHHH
T ss_pred CCeECCC----CCCccCCHHHHHHHHHH
Confidence 5678876 76655 45688889775
No 273
>2elr_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=21.10 E-value=79 Score=16.62 Aligned_cols=24 Identities=17% Similarity=0.097 Sum_probs=16.5
Q ss_pred ccccCCCCCCCCcccc-ChhHHHHHhhhc
Q 046177 143 RPYNCPYAGSECTVMG-DIPYLVAHLKDD 170 (272)
Q Consensus 143 ~~~~CP~~~~~C~~~g-~~~~l~~Hl~~~ 170 (272)
+++.|+. |+... ....|..|....
T Consensus 8 ~~~~C~~----C~k~f~~~~~l~~H~~~H 32 (36)
T 2elr_A 8 KTHLCDM----CGKKFKSKGTLKSHKLLH 32 (36)
T ss_dssp SSCBCTT----TCCBCSSHHHHHHHHHHH
T ss_pred CCeecCc----CCCCcCchHHHHHHHHHh
Confidence 4678876 76655 456888897653
No 274
>1x4s_A Protein FON, zinc finger HIT domain containing protein 2; structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.85.1.2
Probab=20.95 E-value=75 Score=21.06 Aligned_cols=35 Identities=20% Similarity=0.412 Sum_probs=23.4
Q ss_pred CCCeeeeccccccC-cCCccccc-CCceecc-Cccccc
Q 046177 53 VRELLECPVCLNAM-YPPIHQCS-NGHTLCS-GCKPRV 87 (272)
Q Consensus 53 ~~~~l~CpiC~~~l-~~Pv~qC~-cGH~~C~-~C~~~~ 87 (272)
.+..-.|.||..-- .++.|.|+ |+-.+|+ .|....
T Consensus 8 m~~~~~C~vC~~~~~~~akY~CPrC~~rYCSl~C~k~H 45 (59)
T 1x4s_A 8 MEPAGPCGFCPAGEVQPARYTCPRCNAPYCSLRCYRTH 45 (59)
T ss_dssp CCCCEEECSSCTTCCEEECEECTTTCCEESSHHHHHHH
T ss_pred CCCCCcCcCCCCCcCCCccccCcCCCCCccChHHHHHH
Confidence 34456899998632 34457787 8888888 576654
No 275
>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=20.67 E-value=1e+02 Score=17.42 Aligned_cols=24 Identities=25% Similarity=0.378 Sum_probs=16.4
Q ss_pred ccccCCCCCCCCcccc-ChhHHHHHhhhc
Q 046177 143 RPYNCPYAGSECTVMG-DIPYLVAHLKDD 170 (272)
Q Consensus 143 ~~~~CP~~~~~C~~~g-~~~~l~~Hl~~~ 170 (272)
+++.|+. |+... ....|..|+...
T Consensus 11 k~~~C~~----C~k~f~~~~~L~~H~~~H 35 (46)
T 2epz_A 11 KPFDCID----CGKAFSDHIGLNQHRRIH 35 (46)
T ss_dssp CSBCCTT----TCCCBSSHHHHHHHHTTT
T ss_pred CCeECCC----CCceeCCHHHHHHHHHHh
Confidence 5678876 66655 456888887653
No 276
>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A
Probab=20.61 E-value=99 Score=17.01 Aligned_cols=25 Identities=24% Similarity=0.517 Sum_probs=17.1
Q ss_pred ccccCCCCCCCCcccc-ChhHHHHHhhhcC
Q 046177 143 RPYNCPYAGSECTVMG-DIPYLVAHLKDDH 171 (272)
Q Consensus 143 ~~~~CP~~~~~C~~~g-~~~~l~~Hl~~~H 171 (272)
+++.|+. |+... ....|..|+...+
T Consensus 9 k~~~C~~----C~k~f~~~~~L~~H~~~H~ 34 (42)
T 2el5_A 9 NPYECSE----CGKAFNRKDQLISHQRTHA 34 (42)
T ss_dssp CSEECSS----SCCEESSHHHHHHHHGGGC
T ss_pred CCccCCC----cChhhCCHHHHHHHHHhcC
Confidence 5678876 76665 4568888976543
No 277
>1x6a_A LIMK-2, LIM domain kinase 2; LIM-kinase 2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=20.56 E-value=46 Score=22.46 Aligned_cols=23 Identities=9% Similarity=-0.042 Sum_probs=11.8
Q ss_pred ceeccCccccc-CCCCCCcccCCC
Q 046177 77 HTLCSGCKPRV-HNRCPTCRHELG 99 (272)
Q Consensus 77 H~~C~~C~~~~-~~~CP~Cr~~~~ 99 (272)
..+|..|..+. ...|+.|..++.
T Consensus 3 ~~yC~~~y~~~~~~~C~~C~~~I~ 26 (81)
T 1x6a_A 3 SGSSGKDYWGKFGEFCHGCSLLMT 26 (81)
T ss_dssp CCCCCCCSSCCSSCBCTTTCCBCC
T ss_pred CccchhHHhhhcCCcCccCCCCcC
Confidence 34555555443 345666655553
No 278
>1ncs_A Peptide M30F, transcriptional factor SWI5; DNA binding motif, transcription regulation, zinc-finger; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1
Probab=20.51 E-value=45 Score=19.57 Aligned_cols=27 Identities=15% Similarity=0.344 Sum_probs=17.9
Q ss_pred CCccccCCCCCCCCccccC-hhHHHHHhhh
Q 046177 141 IFRPYNCPYAGSECTVMGD-IPYLVAHLKD 169 (272)
Q Consensus 141 ~~~~~~CP~~~~~C~~~g~-~~~l~~Hl~~ 169 (272)
.-+++.|++. .|+.... ...|..|...
T Consensus 15 ~~k~~~C~~~--~C~k~F~~~~~L~~H~~~ 42 (47)
T 1ncs_A 15 PDKTFECLFP--GCTKTFKRRYNIRSHIQT 42 (47)
T ss_dssp TTTEEECCCT--TCCCEECSSSSHHHHHHH
T ss_pred CCCCeECCCC--CCCCccCCHHHHHHHHHH
Confidence 3468899642 3777664 4578888765
No 279
>2v3b_B Rubredoxin 2, rubredoxin; alkane degradation, iron-sulfur protein, oxidoreductase, ELE transfer, electron transport, FAD, NAD, iron; HET: FAD; 2.45A {Pseudomonas aeruginosa}
Probab=20.46 E-value=40 Score=21.89 Aligned_cols=15 Identities=20% Similarity=0.399 Sum_probs=12.0
Q ss_pred cCCCCeeeecccccc
Q 046177 51 SSVRELLECPVCLNA 65 (272)
Q Consensus 51 ~~~~~~l~CpiC~~~ 65 (272)
+++++.+.||+|...
T Consensus 31 ~~lP~dw~CP~Cga~ 45 (55)
T 2v3b_B 31 EDIPADWVCPDCGVG 45 (55)
T ss_dssp GGSCTTCCCTTTCCC
T ss_pred hHCCCCCcCCCCCCC
Confidence 567888999999763
No 280
>2ej4_A Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=20.39 E-value=1.2e+02 Score=20.31 Aligned_cols=23 Identities=22% Similarity=0.166 Sum_probs=15.0
Q ss_pred ccCCCCCCCCcccc-ChhHHHHHhhhcC
Q 046177 145 YNCPYAGSECTVMG-DIPYLVAHLKDDH 171 (272)
Q Consensus 145 ~~CP~~~~~C~~~g-~~~~l~~Hl~~~H 171 (272)
+.|+. |+... ....|..|++..+
T Consensus 63 ~~C~~----C~k~f~~~~~L~~H~~~H~ 86 (95)
T 2ej4_A 63 EECPR----EGKSFKAKYKLVNHIRVHT 86 (95)
T ss_dssp TTCSS----TTCCCSSHHHHHHHHHHHH
T ss_pred cCCCC----CCcccCCHHHHHHHHHhcC
Confidence 56765 65555 4568888987543
No 281
>2elv_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.21 E-value=70 Score=16.98 Aligned_cols=23 Identities=17% Similarity=0.154 Sum_probs=16.2
Q ss_pred ccccCCCCCCCCcccc-ChhHHHHHhhh
Q 046177 143 RPYNCPYAGSECTVMG-DIPYLVAHLKD 169 (272)
Q Consensus 143 ~~~~CP~~~~~C~~~g-~~~~l~~Hl~~ 169 (272)
+++.|+. |+... ....|..|+..
T Consensus 8 k~~~C~~----C~k~f~~~~~l~~H~~~ 31 (36)
T 2elv_A 8 LLYDCHI----CERKFKNELDRDRHMLV 31 (36)
T ss_dssp CCEECSS----SCCEESSHHHHHHHHTT
T ss_pred CCeECCC----CCCccCCHHHHHHHHHH
Confidence 5788886 76665 45678889764
No 282
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=20.17 E-value=58 Score=25.47 Aligned_cols=42 Identities=21% Similarity=0.448 Sum_probs=27.3
Q ss_pred CCeeeeccccccCcCCccccc-CCceeccCccccc--------------CCCCCCcccC
Q 046177 54 RELLECPVCLNAMYPPIHQCS-NGHTLCSGCKPRV--------------HNRCPTCRHE 97 (272)
Q Consensus 54 ~~~l~CpiC~~~l~~Pv~qC~-cGH~~C~~C~~~~--------------~~~CP~Cr~~ 97 (272)
.....|.+|.+-= -++-|. |...||..|+... .-.||.|+..
T Consensus 61 g~~d~C~vC~~GG--~LlcCD~Cpr~Fh~~Cl~p~l~~~~l~~i~~p~~~W~C~~C~~~ 117 (142)
T 2lbm_A 61 GMDEQCRWCAEGG--NLICCDFCHNAFCKKCILRNLGRKELSTIMDENNQWYCYICHPE 117 (142)
T ss_dssp SCBCSCSSSCCCS--SEEECSSSCCEEEHHHHHHHTCHHHHHHHHTSTTCCCCTTTCCC
T ss_pred CCCCeecccCCCC--cEEeCCCCCCeeeHhhcCCCCChhhhhhcccCCCCCEeecccCc
Confidence 3445688887633 244565 8888999997731 1369999753
No 283
>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}
Probab=25.52 E-value=22 Score=17.56 Aligned_cols=21 Identities=29% Similarity=0.532 Sum_probs=12.2
Q ss_pred cccCCCCCCCCccccC-hhHHHHHhh
Q 046177 144 PYNCPYAGSECTVMGD-IPYLVAHLK 168 (272)
Q Consensus 144 ~~~CP~~~~~C~~~g~-~~~l~~Hl~ 168 (272)
|+.|+. |+.... ...|..|..
T Consensus 2 p~~C~~----C~k~f~~~~~l~~H~~ 23 (26)
T 2lvu_A 2 PYVCER----CGKRFVQSSQLANHIR 23 (26)
Confidence 566765 655543 356666754
No 284
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=20.01 E-value=1.1e+02 Score=20.42 Aligned_cols=42 Identities=19% Similarity=0.490 Sum_probs=25.0
Q ss_pred CeeeeccccccCcCCccccc-CCceeccCccccc-------CCCCCCcccCC
Q 046177 55 ELLECPVCLNAMYPPIHQCS-NGHTLCSGCKPRV-------HNRCPTCRHEL 98 (272)
Q Consensus 55 ~~l~CpiC~~~l~~Pv~qC~-cGH~~C~~C~~~~-------~~~CP~Cr~~~ 98 (272)
..-.|.||.+- ..++.|. |...|=..|+... .-.||.|+...
T Consensus 11 ~~~~C~vC~~~--~~ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~~ 60 (66)
T 2lri_C 11 PGARCGVCGDG--TDVLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSGDV 60 (66)
T ss_dssp TTCCCTTTSCC--TTCEECSSSCCEECHHHHCTTTCCCCSSSCCCTTTTTCC
T ss_pred CCCCcCCCCCC--CeEEECCCCCCceecccCCCccCcCCCCCEECccccCCC
Confidence 34468888763 3355676 6666666665421 13688886543
No 285
>2kn9_A Rubredoxin; metalloprotein, ssgcid, structural genomics, seattle structural genomics center for infectious electron transport, iron; NMR {Mycobacterium tuberculosis}
Probab=20.00 E-value=43 Score=23.71 Aligned_cols=14 Identities=21% Similarity=0.582 Sum_probs=9.4
Q ss_pred cCCCCeeeeccccc
Q 046177 51 SSVRELLECPVCLN 64 (272)
Q Consensus 51 ~~~~~~l~CpiC~~ 64 (272)
+++++.+.||+|..
T Consensus 55 edlPddW~CPvCga 68 (81)
T 2kn9_A 55 DDIPDDWSCPDCGA 68 (81)
T ss_dssp TTSCTTCCCTTTCC
T ss_pred hHCCCCCcCCCCCC
Confidence 35666777777765
Done!