Query 046178
Match_columns 515
No_of_seqs 288 out of 1321
Neff 5.9
Searched_HMMs 46136
Date Fri Mar 29 09:27:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046178.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/046178hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF14215 bHLH-MYC_N: bHLH-MYC 100.0 3.6E-53 7.8E-58 397.0 11.6 163 26-216 1-163 (163)
2 cd00083 HLH Helix-loop-helix d 99.2 8.9E-12 1.9E-16 97.2 5.3 53 340-392 4-59 (60)
3 smart00353 HLH helix loop heli 99.2 1.4E-11 3E-16 94.1 6.1 49 345-393 1-52 (53)
4 PF00010 HLH: Helix-loop-helix 99.2 1.6E-11 3.5E-16 94.9 4.7 49 341-389 2-55 (55)
5 KOG1318 Helix loop helix trans 98.6 3.7E-08 8E-13 104.0 5.6 55 340-394 233-291 (411)
6 KOG1319 bHLHZip transcription 98.4 3.9E-07 8.6E-12 86.1 4.9 64 340-403 62-132 (229)
7 cd04897 ACT_ACR_3 ACT domain-c 98.2 9.4E-06 2E-10 67.1 9.6 66 449-514 3-73 (75)
8 KOG2483 Upstream transcription 98.2 4.3E-06 9.4E-11 82.9 8.5 69 336-404 55-126 (232)
9 cd04895 ACT_ACR_1 ACT domain-c 98.2 1.5E-05 3.1E-10 65.5 9.8 66 448-513 2-68 (72)
10 cd04927 ACT_ACR-like_2 Second 98.1 2.2E-05 4.7E-10 64.8 9.6 67 448-514 1-72 (76)
11 cd04896 ACT_ACR-like_3 ACT dom 98.1 1.9E-05 4.2E-10 65.3 9.0 66 449-514 2-73 (75)
12 cd04900 ACT_UUR-like_1 ACT dom 97.9 0.00013 2.8E-09 59.4 10.4 66 449-514 3-70 (73)
13 KOG4304 Transcriptional repres 97.9 7E-06 1.5E-10 82.5 3.5 55 340-394 32-94 (250)
14 KOG3561 Aryl-hydrocarbon recep 97.7 3.3E-05 7.2E-10 88.0 5.1 51 341-391 21-75 (803)
15 cd04925 ACT_ACR_2 ACT domain-c 97.6 0.00051 1.1E-08 56.2 9.7 66 449-514 2-73 (74)
16 KOG0561 bHLH transcription fac 97.6 4.7E-05 1E-09 77.0 3.7 51 345-395 65-117 (373)
17 cd04899 ACT_ACR-UUR-like_2 C-t 97.5 0.00094 2E-08 53.0 9.8 64 449-513 2-66 (70)
18 cd04928 ACT_TyrKc Uncharacteri 97.5 0.00091 2E-08 54.4 9.4 65 449-514 3-68 (68)
19 KOG3960 Myogenic helix-loop-he 97.2 0.00066 1.4E-08 67.4 6.6 63 338-400 116-180 (284)
20 cd04926 ACT_ACR_4 C-terminal 97.2 0.0041 8.9E-08 50.5 9.8 64 449-513 3-67 (72)
21 PLN03217 transcription factor 97.2 0.0011 2.5E-08 55.4 6.4 52 353-404 20-77 (93)
22 KOG2588 Predicted DNA-binding 97.1 0.00028 6E-09 80.9 3.5 66 338-403 274-340 (953)
23 KOG4029 Transcription factor H 97.0 0.00061 1.3E-08 67.6 4.4 60 339-398 108-171 (228)
24 cd04873 ACT_UUR-ACR-like ACT d 97.0 0.0073 1.6E-07 47.4 9.8 65 449-514 2-67 (70)
25 PRK05007 PII uridylyl-transfer 96.8 0.0066 1.4E-07 71.4 10.9 70 445-514 806-879 (884)
26 PF13740 ACT_6: ACT domain; PD 96.7 0.0095 2E-07 48.9 8.5 64 447-512 2-65 (76)
27 cd04893 ACT_GcvR_1 ACT domains 96.4 0.032 6.9E-07 45.9 9.4 62 448-511 2-63 (77)
28 PRK01759 glnD PII uridylyl-tra 96.3 0.018 3.9E-07 67.6 10.6 69 445-513 781-853 (854)
29 cd04875 ACT_F4HF-DF N-terminal 96.2 0.039 8.5E-07 44.6 9.0 63 449-511 1-65 (74)
30 cd04869 ACT_GcvR_2 ACT domains 96.2 0.049 1.1E-06 44.4 9.7 61 450-511 2-68 (81)
31 cd04872 ACT_1ZPV ACT domain pr 96.2 0.021 4.6E-07 47.9 7.6 64 448-511 2-65 (88)
32 PRK00194 hypothetical protein; 96.2 0.023 5E-07 47.7 7.9 65 447-511 3-67 (90)
33 cd04870 ACT_PSP_1 CT domains f 96.2 0.035 7.6E-07 45.2 8.7 63 449-512 1-63 (75)
34 PRK04374 PII uridylyl-transfer 96.2 0.041 8.8E-07 64.8 12.3 78 437-514 784-867 (869)
35 PRK00275 glnD PII uridylyl-tra 96.1 0.037 8E-07 65.3 11.8 78 437-514 802-886 (895)
36 PRK05092 PII uridylyl-transfer 95.9 0.066 1.4E-06 63.5 12.5 78 437-514 831-915 (931)
37 PRK03381 PII uridylyl-transfer 95.9 0.053 1.2E-06 63.1 11.5 65 447-513 707-772 (774)
38 PF01842 ACT: ACT domain; Int 95.9 0.024 5.3E-07 43.8 6.0 37 449-485 2-38 (66)
39 PRK03381 PII uridylyl-transfer 95.5 0.12 2.7E-06 60.1 12.2 70 445-514 597-667 (774)
40 PF13291 ACT_4: ACT domain; PD 95.4 0.12 2.6E-06 42.3 8.6 51 447-497 6-58 (80)
41 PRK03059 PII uridylyl-transfer 95.2 0.092 2E-06 61.8 10.2 67 446-513 785-854 (856)
42 PRK01759 glnD PII uridylyl-tra 95.0 0.16 3.4E-06 59.9 11.5 78 437-514 665-749 (854)
43 TIGR01693 UTase_glnD [Protein- 95.0 0.11 2.4E-06 61.1 10.1 68 446-513 778-849 (850)
44 PRK05007 PII uridylyl-transfer 94.9 0.19 4.1E-06 59.4 11.7 78 437-514 689-773 (884)
45 COG2844 GlnD UTP:GlnB (protein 94.7 0.11 2.4E-06 59.8 8.8 77 436-513 778-857 (867)
46 TIGR01693 UTase_glnD [Protein- 94.7 0.16 3.4E-06 59.8 10.3 70 445-514 666-741 (850)
47 cd04887 ACT_MalLac-Enz ACT_Mal 94.5 0.27 5.8E-06 39.2 8.4 49 450-498 2-51 (74)
48 cd04886 ACT_ThrD-II-like C-ter 94.5 0.2 4.3E-06 38.9 7.5 60 450-510 1-65 (73)
49 PRK03059 PII uridylyl-transfer 94.2 0.26 5.5E-06 58.1 10.5 69 445-513 676-749 (856)
50 PRK00275 glnD PII uridylyl-tra 94.0 0.27 5.9E-06 58.2 10.3 69 446-514 703-778 (895)
51 cd04894 ACT_ACR-like_1 ACT dom 94.0 0.25 5.4E-06 39.6 6.7 63 449-511 2-66 (69)
52 cd04888 ACT_PheB-BS C-terminal 93.8 0.31 6.7E-06 38.9 7.4 61 449-509 2-63 (76)
53 PRK04435 hypothetical protein; 93.0 0.55 1.2E-05 43.7 8.5 68 443-510 65-133 (147)
54 KOG4447 Transcription factor T 92.9 0.045 9.7E-07 50.9 1.1 51 340-390 78-130 (173)
55 PRK05092 PII uridylyl-transfer 92.8 0.65 1.4E-05 55.3 11.0 78 436-513 719-804 (931)
56 cd04877 ACT_TyrR N-terminal AC 92.8 0.76 1.6E-05 37.1 8.2 45 449-496 2-46 (74)
57 cd02116 ACT ACT domains are co 92.8 0.6 1.3E-05 32.9 6.9 35 450-484 1-35 (60)
58 PRK04374 PII uridylyl-transfer 92.4 0.65 1.4E-05 54.9 10.2 69 445-513 688-759 (869)
59 cd04876 ACT_RelA-SpoT ACT dom 92.0 0.79 1.7E-05 34.1 7.1 48 450-497 1-49 (71)
60 PRK06027 purU formyltetrahydro 91.8 1 2.3E-05 46.3 9.7 65 447-511 6-72 (286)
61 TIGR00655 PurU formyltetrahydr 91.7 1.2 2.5E-05 46.0 9.8 63 449-511 2-66 (280)
62 PRK08577 hypothetical protein; 91.6 1.6 3.5E-05 39.7 9.8 64 447-510 56-121 (136)
63 KOG3910 Helix loop helix trans 91.1 0.14 3.1E-06 55.5 2.6 57 339-395 525-585 (632)
64 cd04878 ACT_AHAS N-terminal AC 90.6 1.9 4E-05 33.2 8.0 48 449-496 2-51 (72)
65 cd04874 ACT_Af1403 N-terminal 90.2 2.6 5.7E-05 32.5 8.6 59 449-510 2-61 (72)
66 cd04879 ACT_3PGDH-like ACT_3PG 89.9 1.9 4.1E-05 32.9 7.5 57 450-510 2-60 (71)
67 cd04909 ACT_PDH-BS C-terminal 89.8 1.7 3.6E-05 34.2 7.2 60 449-511 3-64 (69)
68 cd04905 ACT_CM-PDT C-terminal 89.7 2.8 6.1E-05 34.3 8.7 61 449-510 3-64 (80)
69 KOG3560 Aryl-hydrocarbon recep 89.7 0.32 6.9E-06 53.5 3.8 39 348-386 33-75 (712)
70 cd04903 ACT_LSD C-terminal ACT 89.7 1.9 4.1E-05 33.1 7.4 58 449-510 1-60 (71)
71 cd04881 ACT_HSDH-Hom ACT_HSDH_ 89.7 2.8 6.2E-05 32.8 8.5 46 449-494 2-49 (79)
72 cd04883 ACT_AcuB C-terminal AC 89.5 2.7 5.9E-05 33.1 8.2 60 448-511 2-63 (72)
73 PRK13011 formyltetrahydrofolat 89.0 2.2 4.9E-05 44.0 9.2 65 447-512 7-73 (286)
74 cd04908 ACT_Bt0572_1 N-termina 88.8 3 6.5E-05 32.7 8.0 57 449-511 3-59 (66)
75 cd04882 ACT_Bt0572_2 C-termina 88.6 2 4.4E-05 32.9 6.8 56 450-511 2-59 (65)
76 KOG3559 Transcriptional regula 88.2 0.44 9.6E-06 50.8 3.5 42 346-387 7-52 (598)
77 KOG3558 Hypoxia-inducible fact 88.0 0.36 7.7E-06 54.6 2.8 41 346-386 52-96 (768)
78 PRK13010 purU formyltetrahydro 87.3 2.6 5.7E-05 43.6 8.6 65 447-511 9-76 (289)
79 cd04880 ACT_AAAH-PDT-like ACT 86.9 4.1 8.8E-05 32.7 7.8 47 451-497 3-50 (75)
80 KOG3898 Transcription factor N 86.2 0.43 9.2E-06 48.5 2.0 51 340-390 72-125 (254)
81 cd04884 ACT_CBS C-terminal ACT 85.8 4.5 9.8E-05 32.2 7.5 61 450-511 2-65 (72)
82 PRK07334 threonine dehydratase 85.5 3.7 8.1E-05 44.1 8.9 52 446-497 325-381 (403)
83 PF13185 GAF_2: GAF domain; PD 84.7 0.75 1.6E-05 40.3 2.7 65 145-213 68-137 (148)
84 cd04889 ACT_PDH-BS-like C-term 84.5 4 8.6E-05 30.8 6.3 46 450-495 1-47 (56)
85 COG2844 GlnD UTP:GlnB (protein 84.3 3.6 7.9E-05 47.8 8.4 70 440-510 677-748 (867)
86 PRK11589 gcvR glycine cleavage 82.9 22 0.00048 34.5 12.2 63 448-511 96-164 (190)
87 KOG4395 Transcription factor A 80.6 2.3 5E-05 42.9 4.5 53 340-392 174-229 (285)
88 TIGR01817 nifA Nif-specific re 79.5 1.6 3.4E-05 48.7 3.3 77 139-217 68-153 (534)
89 cd04931 ACT_PAH ACT domain of 77.8 15 0.00032 31.4 8.1 60 448-509 15-75 (90)
90 cd04904 ACT_AAAH ACT domain of 77.7 12 0.00025 30.4 7.2 57 450-509 3-60 (74)
91 PRK11589 gcvR glycine cleavage 77.7 5.4 0.00012 38.8 6.0 64 446-511 7-70 (190)
92 cd04901 ACT_3PGDH C-terminal A 76.9 3.1 6.7E-05 32.4 3.5 47 450-496 2-48 (69)
93 COG3830 ACT domain-containing 75.7 4.8 0.0001 34.6 4.4 66 447-512 3-68 (90)
94 cd04902 ACT_3PGDH-xct C-termin 74.7 12 0.00025 29.2 6.3 57 450-510 2-60 (73)
95 PF13710 ACT_5: ACT domain; PD 74.4 7.7 0.00017 30.8 5.1 54 456-511 1-56 (63)
96 PRK11061 fused phosphoenolpyru 73.8 3.7 8.1E-05 47.9 4.4 71 139-212 67-143 (748)
97 TIGR00119 acolac_sm acetolacta 73.2 13 0.00028 35.1 7.1 61 449-511 3-65 (157)
98 KOG3582 Mlx interactors and re 73.2 0.13 2.7E-06 57.9 -7.2 62 339-400 650-716 (856)
99 COG0788 PurU Formyltetrahydrof 71.0 21 0.00045 36.7 8.3 66 446-511 6-73 (287)
100 PRK06737 acetolactate synthase 70.4 17 0.00037 30.3 6.4 60 449-510 4-65 (76)
101 PRK11152 ilvM acetolactate syn 69.8 30 0.00065 28.7 7.8 60 449-511 5-66 (76)
102 PRK11895 ilvH acetolactate syn 69.5 17 0.00037 34.5 7.1 61 449-511 4-66 (161)
103 CHL00100 ilvH acetohydroxyacid 68.3 17 0.00037 34.9 6.9 65 449-513 4-68 (174)
104 cd04906 ACT_ThrD-I_1 First of 66.7 37 0.00081 28.1 7.9 63 447-511 1-64 (85)
105 TIGR00691 spoT_relA (p)ppGpp s 64.6 22 0.00048 41.1 8.1 60 438-497 596-661 (683)
106 PRK13562 acetolactate synthase 64.4 22 0.00048 30.2 6.0 62 449-511 4-67 (84)
107 PF05088 Bac_GDH: Bacterial NA 64.1 35 0.00077 43.0 10.1 69 446-514 488-562 (1528)
108 PRK10872 relA (p)ppGpp synthet 64.0 25 0.00054 41.1 8.3 60 438-497 652-718 (743)
109 PRK11092 bifunctional (p)ppGpp 62.3 26 0.00057 40.7 8.1 61 438-498 612-678 (702)
110 PRK00227 glnD PII uridylyl-tra 61.8 43 0.00092 39.0 9.7 65 449-514 549-614 (693)
111 smart00065 GAF Domain present 61.1 11 0.00023 31.2 3.7 76 139-216 51-135 (149)
112 PF01590 GAF: GAF domain; Int 59.4 11 0.00023 33.1 3.6 62 139-201 51-131 (154)
113 cd04885 ACT_ThrD-I Tandem C-te 59.1 48 0.0011 26.1 6.9 59 451-511 2-61 (68)
114 cd04929 ACT_TPH ACT domain of 57.6 70 0.0015 26.2 7.8 55 453-510 6-61 (74)
115 PRK08198 threonine dehydratase 51.6 65 0.0014 34.5 8.6 66 444-510 324-394 (404)
116 cd04922 ACT_AKi-HSDH-ThrA_2 AC 51.4 98 0.0021 23.4 7.4 59 449-513 3-64 (66)
117 TIGR01127 ilvA_1Cterm threonin 49.3 80 0.0017 33.5 8.8 66 444-510 302-372 (380)
118 PRK06382 threonine dehydratase 47.2 73 0.0016 34.3 8.1 67 444-511 327-398 (406)
119 cd04932 ACT_AKiii-LysC-EC_1 AC 46.0 1.5E+02 0.0032 24.2 8.0 27 454-480 11-37 (75)
120 PRK08178 acetolactate synthase 45.4 1.2E+02 0.0025 26.6 7.5 62 447-511 8-71 (96)
121 PF02120 Flg_hook: Flagellar h 44.9 71 0.0015 26.0 6.0 49 436-484 26-80 (85)
122 COG4492 PheB ACT domain-contai 44.3 1.2E+02 0.0026 28.2 7.6 65 446-510 71-136 (150)
123 PRK05022 anaerobic nitric oxid 44.3 18 0.0004 40.1 3.1 78 139-217 65-153 (509)
124 cd04892 ACT_AK-like_2 ACT doma 43.3 54 0.0012 24.1 4.7 34 449-482 2-38 (65)
125 cd04916 ACT_AKiii-YclM-BS_2 AC 42.7 1.3E+02 0.0028 22.7 6.9 59 449-513 3-64 (66)
126 cd04919 ACT_AK-Hom3_2 ACT doma 42.5 1.3E+02 0.0028 22.8 6.9 27 456-482 13-39 (66)
127 PF09849 DUF2076: Uncharacteri 39.7 75 0.0016 32.3 6.3 50 352-402 6-74 (247)
128 PRK00227 glnD PII uridylyl-tra 38.3 47 0.001 38.7 5.2 60 448-514 632-691 (693)
129 cd04912 ACT_AKiii-LysC-EC-like 38.0 1.4E+02 0.003 24.0 6.6 32 449-480 3-37 (75)
130 PF02344 Myc-LZ: Myc leucine z 37.9 34 0.00073 23.8 2.4 18 347-364 12-29 (32)
131 PF13840 ACT_7: ACT domain ; P 35.9 49 0.0011 26.1 3.5 35 445-479 4-42 (65)
132 PRK15429 formate hydrogenlyase 35.5 40 0.00088 38.8 4.2 77 140-216 252-337 (686)
133 PRK11899 prephenate dehydratas 35.2 2.4E+02 0.0052 29.1 9.3 63 448-511 195-258 (279)
134 cd04868 ACT_AK-like ACT domain 35.2 1.3E+02 0.0028 21.4 5.6 26 457-482 13-38 (60)
135 cd04930 ACT_TH ACT domain of t 34.4 1.4E+02 0.0029 26.7 6.4 59 448-509 42-101 (115)
136 cd04890 ACT_AK-like_1 ACT doma 34.1 1.4E+02 0.003 22.6 5.8 25 456-480 12-36 (62)
137 COG0317 SpoT Guanosine polypho 32.5 1.3E+02 0.0028 35.1 7.4 60 438-497 613-678 (701)
138 KOG4447 Transcription factor T 31.1 43 0.00093 31.6 2.8 23 347-369 29-51 (173)
139 smart00338 BRLZ basic region l 30.9 2.3E+02 0.0049 22.2 6.6 44 348-404 4-47 (65)
140 PF13492 GAF_3: GAF domain; PD 28.6 46 0.001 28.0 2.5 63 139-212 49-116 (129)
141 PRK08526 threonine dehydratase 28.5 2.3E+02 0.005 30.7 8.2 64 445-509 324-392 (403)
142 cd04921 ACT_AKi-HSDH-ThrA-like 27.0 1.7E+02 0.0037 23.2 5.4 33 449-481 3-38 (80)
143 COG4747 ACT domain-containing 26.0 2E+02 0.0044 26.3 6.0 41 449-489 5-45 (142)
144 PF07009 DUF1312: Protein of u 25.6 74 0.0016 28.1 3.2 46 142-189 55-100 (113)
145 PRK15385 magnesium transport p 23.6 3.9E+02 0.0084 26.9 8.1 62 447-509 142-209 (225)
146 KOG3582 Mlx interactors and re 23.4 28 0.00062 40.0 0.2 57 340-399 787-848 (856)
147 cd04918 ACT_AK1-AT_2 ACT domai 22.1 2.9E+02 0.0063 21.4 5.7 29 457-485 13-41 (65)
148 cd04937 ACT_AKi-DapG-BS_2 ACT 21.9 1.8E+02 0.004 22.3 4.6 21 456-476 13-33 (64)
149 PRK11898 prephenate dehydratas 21.9 3.6E+02 0.0078 27.7 7.9 62 448-510 197-260 (283)
150 PF14992 TMCO5: TMCO5 family 20.5 1.3E+02 0.0029 31.1 4.3 26 376-401 144-169 (280)
151 cd04924 ACT_AK-Arch_2 ACT doma 20.3 3.7E+02 0.0081 20.0 7.1 59 449-513 3-64 (66)
No 1
>PF14215 bHLH-MYC_N: bHLH-MYC and R2R3-MYB transcription factors N-terminal
Probab=100.00 E-value=3.6e-53 Score=396.98 Aligned_cols=163 Identities=46% Similarity=0.837 Sum_probs=146.9
Q ss_pred HHHHHHHHHccCCCCcEEEEeeecccCCCCCCcceEEcceecCCCCCCCccccCCCCCCCCCcccchhHHHHHhhhhhhh
Q 046178 26 LQQRLQFIVQSQPEWWAYAIFWQTISNDDNGQLFLAWGDGHYQGTKDASPRARMSMPAPAPGAALDNNMERKRAISSIRG 105 (515)
Q Consensus 26 Lq~~L~~lv~~~~~~W~YAIFWq~~s~~~~g~~vL~WgDGy~~g~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~lre 105 (515)
|||+||+||+ +.+|+||||||+ ++++ ++|+||||||+|++++++.. .+.+.+|+++ ||+
T Consensus 1 Lq~~Lr~lv~--~~~W~YaVFWk~-~~~~---~~L~W~DG~~~g~~~~~~~~------------~~~~~~~~~~---l~~ 59 (163)
T PF14215_consen 1 LQQRLRSLVE--NSQWTYAVFWKL-SPDN---SVLVWGDGYCNGPKETRKNG------------EEEQEQRSKV---LRE 59 (163)
T ss_pred ChHHHHHHhC--CCCCcEEEEeEE-cCCC---CeeeEcceeecCCcccccch------------hhccchhhhH---HHH
Confidence 7999999997 579999999999 8774 49999999999998766421 1345566766 499
Q ss_pred hcccccCCCccccccCCCCCCCceEEEEEeeeeeeCCCCCccceEeeCCCeeeeeCCCCcCcCcchhHHHHhhcCCceEE
Q 046178 106 IQQSFMGHEMDLSMMDGGDVTDTEWFYVMSLTRSFGAGVGIPGRAQSSGSLVWLTGSHELQFYNCERAKEAQSHGIETFV 185 (515)
Q Consensus 106 L~~sl~~g~~~~~~l~~~~vtd~Ewfyl~sm~~sf~~g~GlpG~a~~sg~~~Wl~~~~~~~~~~~~r~~~a~~~giqTiv 185 (515)
|| ++++ ..++.+++|+|+||||++||+|+| |+|+|||||++|+|+||++++.++.+.|+|+++||++||||||
T Consensus 60 l~-~~~~----~~~~~~~~v~~~e~f~~~s~~~sf--g~G~~G~a~~sg~~~Wi~~~~~~~~~~~~r~~~aq~~~~~Tiv 132 (163)
T PF14215_consen 60 LH-SSFS----SYALSPEEVTDTEWFYLVSMSYSF--GEGIPGRAAASGQHIWISGANELDSSYCERAWLAQFAGIQTIV 132 (163)
T ss_pred Hh-hhcc----ccccccchhHHHHHHhhceeeEEe--cCCccEEEeecCccEEEeCCCccccccchhhhhhcccccceEE
Confidence 99 6554 556788999999999999999999 9999999999999999999999999999999999999999999
Q ss_pred EEecCCceEeeccccccccChhHHHHHHHHh
Q 046178 186 CIPTSCGVLELGSSDLIRENWGLVHQVKSLF 216 (515)
Q Consensus 186 ciP~~~GVvELGSt~~v~E~~~lv~~ik~~F 216 (515)
|||+++||||||||++|+||+++|++||++|
T Consensus 133 ~IPv~~GVvELGSt~~I~Ed~~~v~~vk~~F 163 (163)
T PF14215_consen 133 CIPVPNGVVELGSTEKIPEDSNLVQRVKSLF 163 (163)
T ss_pred EEEecCCEEEeeeeeeeccCHHHHHHHHhhC
Confidence 9999999999999999999999999999998
No 2
>cd00083 HLH Helix-loop-helix domain, found in specific DNA- binding proteins that act as transcription factors; 60-100 amino acids long. A DNA-binding basic region is followed by two alpha-helices separated by a variable loop region; HLH forms homo- and heterodimers, dimerization creates a parallel, left-handed, four helix bundle; the basic region N-terminal to the first amphipathic helix mediates high-affinity DNA-binding; there are several groups of HLH proteins: those (E12/E47) which bind specific hexanucleotide sequences such as E-box (5-CANNTG-3) or StRE 5-ATCACCCCAC-3), those lacking the basic domain (Emc, Id) function as negative regulators since they fail to bind DNA, those (hairy, E(spl), deadpan) which repress transcription although they can bind specific hexanucleotide sequences such as N-box (5-CACGc/aG-3), those which have a COE domain (Collier/Olf-1/EBF) which is involved in both in dimerization and in DNA binding, and those which bind pentanucleotides ACGTG or GCGTG and
Probab=99.24 E-value=8.9e-12 Score=97.21 Aligned_cols=53 Identities=36% Similarity=0.629 Sum_probs=49.5
Q ss_pred CCccchHHHHHHHHHHHHHHHHHhccCCCC---CCCChhhHHHHHHHHHHHHHHHH
Q 046178 340 TPLNHVEAERQRREKLNHRFYALRAVVPNV---SRMDKASLLSDAVSYIRELKVKI 392 (515)
Q Consensus 340 ~~~~H~~~ER~RR~kln~~f~~LrslvP~~---~k~dKasIL~daI~YIk~Lq~~v 392 (515)
.+..|+..||+||++||..|..|+++||.. .|+||++||..||+||+.|+.++
T Consensus 4 ~r~~~~~~Er~RR~~~n~~~~~L~~llp~~~~~~k~~k~~iL~~a~~yI~~L~~~~ 59 (60)
T cd00083 4 RREAHNLRERRRRERINDAFDELRSLLPTLPPSKKLSKAEILRKAVDYIKSLQELL 59 (60)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHh
Confidence 356799999999999999999999999987 89999999999999999999875
No 3
>smart00353 HLH helix loop helix domain.
Probab=99.24 E-value=1.4e-11 Score=94.13 Aligned_cols=49 Identities=37% Similarity=0.657 Sum_probs=45.6
Q ss_pred hHHHHHHHHHHHHHHHHHhccCC---CCCCCChhhHHHHHHHHHHHHHHHHH
Q 046178 345 VEAERQRREKLNHRFYALRAVVP---NVSRMDKASLLSDAVSYIRELKVKID 393 (515)
Q Consensus 345 ~~~ER~RR~kln~~f~~LrslvP---~~~k~dKasIL~daI~YIk~Lq~~v~ 393 (515)
+..||+||++||+.|..|+++|| ...|+||++||..||+||++|+.+++
T Consensus 1 n~~Er~RR~~~n~~~~~L~~lip~~~~~~k~~k~~iL~~ai~yi~~L~~~~~ 52 (53)
T smart00353 1 NARERRRRRKINEAFDELRSLLPTLPNNKKLSKAEILRLAIEYIKSLQEELQ 52 (53)
T ss_pred CHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 36899999999999999999999 46799999999999999999999876
No 4
>PF00010 HLH: Helix-loop-helix DNA-binding domain only nuclear translocator protein (Arnt).; InterPro: IPR011598 The helix-loop-helix (HLH) DNA-binding domain consists of a closed bundle of four helices in a left-handed twist with two crossover connections. The HLH domain directs dimerisation, and is juxtaposed to basic regions to create a DNA interaction interface surface that recognises specific DNA sequences. Basic region/HLH (bHLH) proteins regulate diverse biological pathways []. bHLH proteins include MyoD [], SREBPs (sterol regulatory element binding proteins) [], and yeast Pho4 (phosphatase system) []. In certain proteins the bHLH domain contains a leucine-zipper motif. The bHLH/leucine zipper (bHLHZip) domain specifies dimerisation within a network of proteins and determines sequence-specific DNA binding []. bHLHZip domains occur in the transcription factors Myc, Mad, Max and Usf [, ]. This entry is bHLHZip, which covers the bHLH domain and the leucine zipper motif, when present.; PDB: 1NLW_A 1NKP_D 1A93_A 2A93_A 1AM9_C 3U5V_A 1A0A_B 2QL2_C 1UKL_C 1AN4_B ....
Probab=99.20 E-value=1.6e-11 Score=94.87 Aligned_cols=49 Identities=39% Similarity=0.737 Sum_probs=45.8
Q ss_pred CccchHHHHHHHHHHHHHHHHHhccCCCC-----CCCChhhHHHHHHHHHHHHH
Q 046178 341 PLNHVEAERQRREKLNHRFYALRAVVPNV-----SRMDKASLLSDAVSYIRELK 389 (515)
Q Consensus 341 ~~~H~~~ER~RR~kln~~f~~LrslvP~~-----~k~dKasIL~daI~YIk~Lq 389 (515)
+..|+..||+||.+||+.|..|+.+||.. .|.+|++||..||+||++||
T Consensus 2 R~~h~~~Er~RR~~i~~~~~~L~~llp~~~~~~~~k~~K~~iL~~ai~yI~~Lq 55 (55)
T PF00010_consen 2 RQKHNERERRRRDRINDCFDELRELLPSCSAGSSRKLSKASILQKAIDYIKQLQ 55 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCCSSHHCCTTSSSSHHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHhccchhccccccCCHHHHHHHHHHHHHHhC
Confidence 35799999999999999999999999975 78999999999999999997
No 5
>KOG1318 consensus Helix loop helix transcription factor EB [Transcription]
Probab=98.62 E-value=3.7e-08 Score=104.00 Aligned_cols=55 Identities=35% Similarity=0.606 Sum_probs=49.8
Q ss_pred CCccchHHHHHHHHHHHHHHHHHhccCCCC----CCCChhhHHHHHHHHHHHHHHHHHH
Q 046178 340 TPLNHVEAERQRREKLNHRFYALRAVVPNV----SRMDKASLLSDAVSYIRELKVKIDD 394 (515)
Q Consensus 340 ~~~~H~~~ER~RR~kln~~f~~LrslvP~~----~k~dKasIL~daI~YIk~Lq~~v~~ 394 (515)
++.+|++.|||||++||+++..|..|||.. .|..|..||..+++||++||+..++
T Consensus 233 Krd~HNeVERRRR~nIN~~IkeLg~liP~~~~~~~~~nKgtILk~s~dYIr~Lqq~~q~ 291 (411)
T KOG1318|consen 233 KRDNHNEVERRRRENINDRIKELGQLIPKCNSEDMKSNKGTILKASCDYIRELQQTLQR 291 (411)
T ss_pred HHhhhhHHHHHHHHHHHHHHHHHHHhCCCCCcchhhcccchhhHHHHHHHHHHHHHHHH
Confidence 567999999999999999999999999964 4667999999999999999887763
No 6
>KOG1319 consensus bHLHZip transcription factor BIGMAX [Transcription]
Probab=98.36 E-value=3.9e-07 Score=86.10 Aligned_cols=64 Identities=23% Similarity=0.445 Sum_probs=56.4
Q ss_pred CCccchHHHHHHHHHHHHHHHHHhccCCCC-------CCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 046178 340 TPLNHVEAERQRREKLNHRFYALRAVVPNV-------SRMDKASLLSDAVSYIRELKVKIDDLESQLLQRE 403 (515)
Q Consensus 340 ~~~~H~~~ER~RR~kln~~f~~LrslvP~~-------~k~dKasIL~daI~YIk~Lq~~v~~Le~~~~~~~ 403 (515)
.+..|.-+||+||+-||.-|..|..|||.. .|..||.||..||+||..|++.+...+.+...+.
T Consensus 62 rr~aHtqaEqkRRdAIk~GYddLq~LvP~cq~~ds~g~KlskA~ILqksidyi~~L~~~k~kqe~e~s~L~ 132 (229)
T KOG1319|consen 62 RRRAHTQAEQKRRDAIKRGYDDLQTLVPTCQQQDSIGQKLSKAIILQKTIDYIQFLHKEKKKQEEEVSTLR 132 (229)
T ss_pred HHHHHHHHHHHHHHHHHhchHHHHHhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456799999999999999999999999943 3788999999999999999999888888776554
No 7
>cd04897 ACT_ACR_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.23 E-value=9.4e-06 Score=67.11 Aligned_cols=66 Identities=20% Similarity=0.300 Sum_probs=57.2
Q ss_pred EEEEEecCCCChHHHHHHHHHhCCceEEEEEEEeeCCEEEEEEEEEcCCC-CCC----HHHHHHHHHHHhh
Q 046178 449 MIRVQSENVNHPAAKLMSSLRDLDLQLHHASMSCVNDLMLQDIVVRVPDG-LRT----EDALRSALLRRLD 514 (515)
Q Consensus 449 ~I~I~C~~r~glL~~Im~aLeeL~LdV~~a~~S~~~~~vl~~i~vkv~~~-~~s----~e~L~~aL~~~l~ 514 (515)
+|+|.|++|+|+|.+|..+|-+++++|.+|.|+|.++++..+|.+.-.+| .++ .+.|+++|..+|.
T Consensus 3 vveV~~~DRpGLL~~i~~~l~~~~l~I~~A~I~T~gera~D~FyV~d~~g~kl~~~~~~~~l~~~L~~al~ 73 (75)
T cd04897 3 VVTVQCRDRPKLLFDVVCTLTDMDYVVFHATIDTDGDDAHQEYYIRHKDGRTLSTEGERQRVIKCLEAAIE 73 (75)
T ss_pred EEEEEeCCcCcHHHHHHHHHHhCCeEEEEEEEeecCceEEEEEEEEcCCCCccCCHHHHHHHHHHHHHHHh
Confidence 68999999999999999999999999999999999999999999986554 343 4567777777764
No 8
>KOG2483 consensus Upstream transcription factor 2/L-myc-2 protein [Transcription]
Probab=98.21 E-value=4.3e-06 Score=82.87 Aligned_cols=69 Identities=22% Similarity=0.303 Sum_probs=57.9
Q ss_pred CCCCCCccchHHHHHHHHHHHHHHHHHhccCCCC--CCCC-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 046178 336 LGRETPLNHVEAERQRREKLNHRFYALRAVVPNV--SRMD-KASLLSDAVSYIRELKVKIDDLESQLLQRES 404 (515)
Q Consensus 336 ~~~e~~~~H~~~ER~RR~kln~~f~~LrslvP~~--~k~d-KasIL~daI~YIk~Lq~~v~~Le~~~~~~~s 404 (515)
+....+..|++.||+||..|++.|..|+.+||.. .+.. .++||..|..||+.|+.+..+.+..++++..
T Consensus 55 ~~~~~R~~HN~LEk~RRahlk~~~~~Lk~~vP~~~~~~~~t~lsiL~kA~~~i~~l~~~~~~~~~~~e~l~~ 126 (232)
T KOG2483|consen 55 SAASSRAHHNALEKRRRAHLKDCFESLKDSVPLLNGETRSTTLSILDKALEHIQSLERKSATQQQDIEDLSR 126 (232)
T ss_pred CCCcchhhhhhhhHHHHHHHHHHHHHHHHhCCCCCCcchhhhhHhhhhHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 3455788999999999999999999999999975 3333 6899999999999999888888777765543
No 9
>cd04895 ACT_ACR_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the N-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.19 E-value=1.5e-05 Score=65.50 Aligned_cols=66 Identities=23% Similarity=0.253 Sum_probs=54.5
Q ss_pred EEEEEEecCCCChHHHHHHHHHhCCceEEEEEEEeeCCEEEEEEEEEcCCC-CCCHHHHHHHHHHHh
Q 046178 448 AMIRVQSENVNHPAAKLMSSLRDLDLQLHHASMSCVNDLMLQDIVVRVPDG-LRTEDALRSALLRRL 513 (515)
Q Consensus 448 ~~I~I~C~~r~glL~~Im~aLeeL~LdV~~a~~S~~~~~vl~~i~vkv~~~-~~s~e~L~~aL~~~l 513 (515)
.+|+|.+++|+|+|.+|.++|.++||+|+.|.|++.++++..+|-+.-.+| .++.++..+.|.++|
T Consensus 2 Tviev~a~DRpGLL~~i~~~l~~~gl~I~~AkIsT~Gerv~DvFyV~d~~g~kl~d~~~~~~l~~~L 68 (72)
T cd04895 2 TLVKVDSARKPGILLEAVQVLTDLDLCITKAYISSDGGWFMDVFHVTDQLGNKLTDDSLIAYIEKSL 68 (72)
T ss_pred EEEEEEECCcCCHHHHHHHHHHHCCcEEEEEEEeecCCeEEEEEEEECCCCCCCCCHHHHHHHHHHh
Confidence 368999999999999999999999999999999999999999999986654 454334444454444
No 10
>cd04927 ACT_ACR-like_2 Second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.12 E-value=2.2e-05 Score=64.76 Aligned_cols=67 Identities=13% Similarity=0.159 Sum_probs=55.6
Q ss_pred EEEEEEecCCCChHHHHHHHHHhCCceEEEEEEEe-eCCEEEEEEEEEcCCCCC-C---HHHHHHHHHHHhh
Q 046178 448 AMIRVQSENVNHPAAKLMSSLRDLDLQLHHASMSC-VNDLMLQDIVVRVPDGLR-T---EDALRSALLRRLD 514 (515)
Q Consensus 448 ~~I~I~C~~r~glL~~Im~aLeeL~LdV~~a~~S~-~~~~vl~~i~vkv~~~~~-s---~e~L~~aL~~~l~ 514 (515)
++++|.|+.++|+|.+|..+|..+||+|++|.+++ .++.++.+|.+.-+++.. + .++|+++|.++|.
T Consensus 1 ~~~ei~~~Dr~gLfa~i~~~l~~~~l~I~~A~I~Tt~~~~v~D~F~V~d~~~~~~~~~~~~~l~~~L~~~L~ 72 (76)
T cd04927 1 FLLKLFCSDRKGLLHDVTEVLYELELTIERVKVSTTPDGRVLDLFFITDARELLHTKKRREETYDYLRAVLG 72 (76)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHCCCeEEEEEEEECCCCEEEEEEEEeCCCCCCCCHHHHHHHHHHHHHHHc
Confidence 47899999999999999999999999999999996 889999999997655442 2 4456666666654
No 11
>cd04896 ACT_ACR-like_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.11 E-value=1.9e-05 Score=65.29 Aligned_cols=66 Identities=11% Similarity=0.143 Sum_probs=56.5
Q ss_pred EEEEEecCCCChHHHHHHHHHhCCceEEEEEEE--eeCCEEEEEEEEEcCCCCCC----HHHHHHHHHHHhh
Q 046178 449 MIRVQSENVNHPAAKLMSSLRDLDLQLHHASMS--CVNDLMLQDIVVRVPDGLRT----EDALRSALLRRLD 514 (515)
Q Consensus 449 ~I~I~C~~r~glL~~Im~aLeeL~LdV~~a~~S--~~~~~vl~~i~vkv~~~~~s----~e~L~~aL~~~l~ 514 (515)
+|+|.|++|+|+|.+|.++|.+++|+|+.|.|+ +.++++..+|.+...++.++ .+.|+++|..+|.
T Consensus 2 vlev~a~DRpGLL~~i~~~l~~~~l~i~~AkI~~~T~Gerv~D~Fyv~~~g~kl~d~~~~~~L~~~L~~~l~ 73 (75)
T cd04896 2 LLQIRCVDQKGLLYDILRTSKDCNIQISYGRFSSKVKGYREVDLFIVQSDGKKIMDPKKQAALCARLREEMV 73 (75)
T ss_pred EEEEEeCCcccHHHHHHHHHHHCCeEEEEEEEecCcccCEEEEEEEEeCCCCccCCHHHHHHHHHHHHHHhc
Confidence 689999999999999999999999999999999 99999999999955444443 4567777777664
No 12
>cd04900 ACT_UUR-like_1 ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains. This ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD is the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted tyrosine kinase. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.92 E-value=0.00013 Score=59.36 Aligned_cols=66 Identities=20% Similarity=0.240 Sum_probs=52.2
Q ss_pred EEEEEecCCCChHHHHHHHHHhCCceEEEEEEEee-CCEEEEEEEEEcCCC-CCCHHHHHHHHHHHhh
Q 046178 449 MIRVQSENVNHPAAKLMSSLRDLDLQLHHASMSCV-NDLMLQDIVVRVPDG-LRTEDALRSALLRRLD 514 (515)
Q Consensus 449 ~I~I~C~~r~glL~~Im~aLeeL~LdV~~a~~S~~-~~~vl~~i~vkv~~~-~~s~e~L~~aL~~~l~ 514 (515)
.|.|.|++++|+|.+|..+|..+||+|++|.+.+. ++.++.+|.+.-+++ ....++..+.|.+.|.
T Consensus 3 ~i~v~~~Dr~gLl~~i~~~l~~~~l~I~~A~i~T~~~~~v~D~F~v~~~~~~~~~~~~~~~~l~~~L~ 70 (73)
T cd04900 3 EVFIYTPDRPGLFARIAGALDQLGLNILDARIFTTRDGYALDTFVVLDPDGEPIGERERLARIREALE 70 (73)
T ss_pred EEEEEecCCCCHHHHHHHHHHHCCCCeEEeEEEEeCCCeEEEEEEEECCCCCCCChHHHHHHHHHHHH
Confidence 58899999999999999999999999999999887 689999999975544 3333343444555443
No 13
>KOG4304 consensus Transcriptional repressors of the hairy/E(spl) family (contains HLH) [Transcription]
Probab=97.91 E-value=7e-06 Score=82.52 Aligned_cols=55 Identities=24% Similarity=0.436 Sum_probs=48.1
Q ss_pred CCccchHHHHHHHHHHHHHHHHHhccCCC--------CCCCChhhHHHHHHHHHHHHHHHHHH
Q 046178 340 TPLNHVEAERQRREKLNHRFYALRAVVPN--------VSRMDKASLLSDAVSYIRELKVKIDD 394 (515)
Q Consensus 340 ~~~~H~~~ER~RR~kln~~f~~LrslvP~--------~~k~dKasIL~daI~YIk~Lq~~v~~ 394 (515)
...+|-+.|||||.+||+.+..|+.|||. .+|++||-||.-|++|+++|+...+.
T Consensus 32 rk~~Kpl~EKkRRaRIN~~L~eLK~Li~e~~~~~~~~~sklEKAdILEltV~hL~~l~~~~~~ 94 (250)
T KOG4304|consen 32 RKVRKPLLEKKRRARINRCLDELKDLIPEALKKDGQRHSKLEKADILELTVNHLRQLQRSQQA 94 (250)
T ss_pred hhhcchhHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHhccccc
Confidence 44567799999999999999999999993 38999999999999999999876543
No 14
>KOG3561 consensus Aryl-hydrocarbon receptor nuclear translocator [Transcription]
Probab=97.71 E-value=3.3e-05 Score=88.01 Aligned_cols=51 Identities=31% Similarity=0.443 Sum_probs=46.8
Q ss_pred CccchHHHHHHHHHHHHHHHHHhccCCCC----CCCChhhHHHHHHHHHHHHHHH
Q 046178 341 PLNHVEAERQRREKLNHRFYALRAVVPNV----SRMDKASLLSDAVSYIRELKVK 391 (515)
Q Consensus 341 ~~~H~~~ER~RR~kln~~f~~LrslvP~~----~k~dKasIL~daI~YIk~Lq~~ 391 (515)
+.+|+.+|||||+|+|.-+..|.+|||.. -|+||.+||..||..|+.+++.
T Consensus 21 Re~~~~~EKrRRdq~N~yI~ELs~Mvp~~~~~~RK~DK~tVLr~aV~~lr~~k~~ 75 (803)
T KOG3561|consen 21 RENRSEIEKRRRDQMNKYIEELSEMVPTNASLSRKPDKLTVLRMAVDHLRLIKEQ 75 (803)
T ss_pred cccchhHHHHHHHHHHHHHHHHHHhhhcchhcccCchHHHHHHHHHHHHHHHhhh
Confidence 55799999999999999999999999953 6999999999999999988773
No 15
>cd04925 ACT_ACR_2 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.63 E-value=0.00051 Score=56.16 Aligned_cols=66 Identities=18% Similarity=0.138 Sum_probs=55.0
Q ss_pred EEEEEecCCCChHHHHHHHHHhCCceEEEEEEEeeCCEEEEEEEEEcCC-C-CC-C---HHHHHHHHHHHhh
Q 046178 449 MIRVQSENVNHPAAKLMSSLRDLDLQLHHASMSCVNDLMLQDIVVRVPD-G-LR-T---EDALRSALLRRLD 514 (515)
Q Consensus 449 ~I~I~C~~r~glL~~Im~aLeeL~LdV~~a~~S~~~~~vl~~i~vkv~~-~-~~-s---~e~L~~aL~~~l~ 514 (515)
+|+|.++.++|+|.+|..+|..+|++|+.|.+++.++.++.+|.+.-++ + .. + .+.|+++|.+.|.
T Consensus 2 ~~~v~~~Dr~gLl~~i~~~l~~~~lnI~~A~i~t~~~~~~d~f~V~d~~~~~~~~~~~~~~~i~~~L~~~l~ 73 (74)
T cd04925 2 AIELTGTDRPGLLSEVFAVLADLHCNVVEARAWTHNGRLACVIYVRDEETGAPIDDPIRLASIEDRLDNVLR 73 (74)
T ss_pred EEEEEECCCCCHHHHHHHHHHHCCCcEEEEEEEEECCEEEEEEEEEcCcCCCCCCCHHHHHHHHHHHHHHhc
Confidence 6899999999999999999999999999999999999999999987543 3 22 3 3567777766653
No 16
>KOG0561 consensus bHLH transcription factor [Transcription]
Probab=97.59 E-value=4.7e-05 Score=76.99 Aligned_cols=51 Identities=31% Similarity=0.563 Sum_probs=45.0
Q ss_pred hHHHHHHHHHHHHHHHHHhccCCC--CCCCChhhHHHHHHHHHHHHHHHHHHH
Q 046178 345 VEAERQRREKLNHRFYALRAVVPN--VSRMDKASLLSDAVSYIRELKVKIDDL 395 (515)
Q Consensus 345 ~~~ER~RR~kln~~f~~LrslvP~--~~k~dKasIL~daI~YIk~Lq~~v~~L 395 (515)
+.-||||.+-||.-|..||+|+|. ..|.+||+||..|.+||.+|+.+.-+|
T Consensus 65 NsNERRRMQSINAGFqsLr~LlPr~eGEKLSKAAILQQTa~yI~~Le~~Kt~l 117 (373)
T KOG0561|consen 65 NSNERRRMQSINAGFQSLRALLPRKEGEKLSKAAILQQTADYIHQLEGHKTEL 117 (373)
T ss_pred cchHHHHHHhhhHHHHHHHHhcCcccchhhHHHHHHHHHHHHHHHHHhccccc
Confidence 346999999999999999999996 689999999999999999997655443
No 17
>cd04899 ACT_ACR-UUR-like_2 C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains. This ACT domain family, ACT_ACR-UUR-like_2, includes the second of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the second and fourth ACT domains of a novel protein composed almost entirely of ACT domain repeats, the ACR protein. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.53 E-value=0.00094 Score=52.98 Aligned_cols=64 Identities=19% Similarity=0.220 Sum_probs=52.0
Q ss_pred EEEEEecCCCChHHHHHHHHHhCCceEEEEEEEeeCCEEEEEEEEEcCCC-CCCHHHHHHHHHHHh
Q 046178 449 MIRVQSENVNHPAAKLMSSLRDLDLQLHHASMSCVNDLMLQDIVVRVPDG-LRTEDALRSALLRRL 513 (515)
Q Consensus 449 ~I~I~C~~r~glL~~Im~aLeeL~LdV~~a~~S~~~~~vl~~i~vkv~~~-~~s~e~L~~aL~~~l 513 (515)
.|.|.|+.++|+|.+|+.+|.+++++|.++.+.+.++.++..|.+.-.++ ..+. +..+.|.++|
T Consensus 2 ~l~v~~~d~~gll~~i~~~l~~~~~~I~~~~~~~~~~~~~~~f~i~~~~~~~~~~-~~~~~i~~~l 66 (70)
T cd04899 2 VLELTALDRPGLLADVTRVLAELGLNIHSAKIATLGERAEDVFYVTDADGQPLDP-ERQEALRAAL 66 (70)
T ss_pred EEEEEEcCCccHHHHHHHHHHHCCCeEEEEEEEecCCEEEEEEEEECCCCCcCCH-HHHHHHHHHH
Confidence 58899999999999999999999999999999998889999999987554 3443 3333454444
No 18
>cd04928 ACT_TyrKc Uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains. This CD includes a novel, yet uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.51 E-value=0.00091 Score=54.35 Aligned_cols=65 Identities=26% Similarity=0.207 Sum_probs=55.8
Q ss_pred EEEEEecCCCChHHHHHHHHHhCCceEEEEEEEe-eCCEEEEEEEEEcCCCCCCHHHHHHHHHHHhh
Q 046178 449 MIRVQSENVNHPAAKLMSSLRDLDLQLHHASMSC-VNDLMLQDIVVRVPDGLRTEDALRSALLRRLD 514 (515)
Q Consensus 449 ~I~I~C~~r~glL~~Im~aLeeL~LdV~~a~~S~-~~~~vl~~i~vkv~~~~~s~e~L~~aL~~~l~ 514 (515)
.|-|.|+.++|+|++|..+|..+||+|+.|++.+ .+|.++.+|.|.-.++- .+++|..+|.++|.
T Consensus 3 eI~V~~~Dr~gLFa~iag~L~~~~LnI~~A~i~tt~dG~~LDtF~V~d~~~~-~~~~~~~~~~~~~~ 68 (68)
T cd04928 3 EITFAAGDKPKLLSQLSSLLGDLGLNIAEAHAFSTDDGLALDIFVVTGWKRG-ETAALGHALQKEID 68 (68)
T ss_pred EEEEEECCCcchHHHHHHHHHHCCCceEEEEEEEcCCCeEEEEEEEecCCcc-chHHHHHHHHHhhC
Confidence 4678999999999999999999999999999985 46799999999855443 67799999988873
No 19
>KOG3960 consensus Myogenic helix-loop-helix transcription factor [Transcription]
Probab=97.23 E-value=0.00066 Score=67.35 Aligned_cols=63 Identities=24% Similarity=0.369 Sum_probs=52.0
Q ss_pred CCCCccchHHHHHHHHHHHHHHHHHhc-cCCC-CCCCChhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 046178 338 RETPLNHVEAERQRREKLNHRFYALRA-VVPN-VSRMDKASLLSDAVSYIRELKVKIDDLESQLL 400 (515)
Q Consensus 338 ~e~~~~H~~~ER~RR~kln~~f~~Lrs-lvP~-~~k~dKasIL~daI~YIk~Lq~~v~~Le~~~~ 400 (515)
.+.|..-.+.||||=.|+|+.|.+|+- -.+| ....-|+-||..||+||..||.-++++.....
T Consensus 116 vDRRKAATMRERRRLkKVNEAFE~LKRrT~~NPNQRLPKVEILRsAI~YIE~Lq~LL~~~~~~~~ 180 (284)
T KOG3960|consen 116 VDRRKAATMRERRRLKKVNEAFETLKRRTSSNPNQRLPKVEILRSAIRYIERLQALLQEQDQAEK 180 (284)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccccccHHHHHHHHHHHHHHHHHHHHHhhccch
Confidence 345666778999999999999999964 4455 46789999999999999999998888876553
No 20
>cd04926 ACT_ACR_4 C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.18 E-value=0.0041 Score=50.48 Aligned_cols=64 Identities=14% Similarity=0.189 Sum_probs=51.4
Q ss_pred EEEEEecCCCChHHHHHHHHHhCCceEEEEEEEeeCCEEEEEEEEEcCCCC-CCHHHHHHHHHHHh
Q 046178 449 MIRVQSENVNHPAAKLMSSLRDLDLQLHHASMSCVNDLMLQDIVVRVPDGL-RTEDALRSALLRRL 513 (515)
Q Consensus 449 ~I~I~C~~r~glL~~Im~aLeeL~LdV~~a~~S~~~~~vl~~i~vkv~~~~-~s~e~L~~aL~~~l 513 (515)
.|.|.++.++|+|.+|..+|.+++++|++|.+.+.++..+.+|++.-.++. .+. +..+.|.++|
T Consensus 3 ri~V~~~D~~Gll~~i~~~l~~~~lnI~sa~i~t~~~~~~d~f~v~~~~~~~~~~-~~~~~l~~~l 67 (72)
T cd04926 3 RLELRTEDRVGLLSDVTRVFRENGLTVTRAEISTQGDMAVNVFYVTDANGNPVDP-KTIEAVRQEI 67 (72)
T ss_pred EEEEEECCccCHHHHHHHHHHHCCcEEEEEEEecCCCeEEEEEEEECCCCCcCCH-HHHHHHHHHh
Confidence 578899999999999999999999999999999988888888888754442 343 4445566555
No 21
>PLN03217 transcription factor ATBS1; Provisional
Probab=97.17 E-value=0.0011 Score=55.44 Aligned_cols=52 Identities=27% Similarity=0.556 Sum_probs=44.7
Q ss_pred HHHHHHHHHHhccCCCC------CCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 046178 353 EKLNHRFYALRAVVPNV------SRMDKASLLSDAVSYIRELKVKIDDLESQLLQRES 404 (515)
Q Consensus 353 ~kln~~f~~LrslvP~~------~k~dKasIL~daI~YIk~Lq~~v~~Le~~~~~~~s 404 (515)
++|++....|+.|+|.. .|..-+-+|.+|+.||+.|+++|..|.+++.++-.
T Consensus 20 dqi~dLvsKLq~llPe~r~~r~s~k~saskvLqEtC~YIrsLhrEvDdLSerLs~LL~ 77 (93)
T PLN03217 20 DQINDLIIKLQQLLPELRDSRRSDKVSAARVLQDTCNYIRNLHREVDDLSERLSELLA 77 (93)
T ss_pred HHHHHHHHHHHHHChHHHhhhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 67999999999999953 34455568999999999999999999999987754
No 22
>KOG2588 consensus Predicted DNA-binding protein [Transcription]
Probab=97.14 E-value=0.00028 Score=80.94 Aligned_cols=66 Identities=23% Similarity=0.396 Sum_probs=59.3
Q ss_pred CCCCccchHHHHHHHHHHHHHHHHHhccCCC-CCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 046178 338 RETPLNHVEAERQRREKLNHRFYALRAVVPN-VSRMDKASLLSDAVSYIRELKVKIDDLESQLLQRE 403 (515)
Q Consensus 338 ~e~~~~H~~~ER~RR~kln~~f~~LrslvP~-~~k~dKasIL~daI~YIk~Lq~~v~~Le~~~~~~~ 403 (515)
.+.+.+|+..|||-|..||+++..|+.+||. ..|..|.+.|..||+||++|+...+.++.+...++
T Consensus 274 ~~kRtAHN~IEKRYRsSINDKI~eLk~lV~g~~aKl~kSavLr~ai~~i~dl~~~nq~lk~~~~~l~ 340 (953)
T KOG2588|consen 274 GEKRTAHNIIEKRYRSSINDKIIELKDLVPGTEAKLNKSAVLRKAIDYIEDLQGYNQKLKLENASLR 340 (953)
T ss_pred CcccchhhHHHHHhhcchhHHHHHHHHhcCccHhhhhhhhhHHHHHHHHHHhhccccccchhhhhhh
Confidence 5789999999999999999999999999996 58999999999999999999988887777665443
No 23
>KOG4029 consensus Transcription factor HAND2/Transcription factor TAL1/TAL2/LYL1 [Transcription]
Probab=97.04 E-value=0.00061 Score=67.61 Aligned_cols=60 Identities=32% Similarity=0.413 Sum_probs=51.6
Q ss_pred CCCccchHHHHHHHHHHHHHHHHHhccCCC----CCCCChhhHHHHHHHHHHHHHHHHHHHHHH
Q 046178 339 ETPLNHVEAERQRREKLNHRFYALRAVVPN----VSRMDKASLLSDAVSYIRELKVKIDDLESQ 398 (515)
Q Consensus 339 e~~~~H~~~ER~RR~kln~~f~~LrslvP~----~~k~dKasIL~daI~YIk~Lq~~v~~Le~~ 398 (515)
..+..+++.||+|=+.+|..|..||.+||. ..|..|..+|.-||.||+.|+.-++.-+..
T Consensus 108 ~~~~~~n~RER~Rv~~vN~~f~~Lr~~lP~~~~~~kklSKveTLr~A~~YI~~L~~lL~~~~~~ 171 (228)
T KOG4029|consen 108 AQRQARNARERQRVQSVNSAFAELRALLPTEPPQSKKLSKVETLRLATSYIRYLTKLLATQEAP 171 (228)
T ss_pred hhhhhhhhhhhhcccchhhhhHHHHhcCCCCCCcccccCcccchHHHHHHHHHHHHHhcccccC
Confidence 356678888999999999999999999995 468899999999999999999876665543
No 24
>cd04873 ACT_UUR-ACR-like ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD. This ACT domain family, ACT_UUR_ACR-like, includes the two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the four ACT domains of a novel protein composed almost entirely of ACT domain repeats (the ACR protein) and like proteins. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. This CD also includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein and related domains, as well as, the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted t
Probab=97.04 E-value=0.0073 Score=47.39 Aligned_cols=65 Identities=23% Similarity=0.263 Sum_probs=51.1
Q ss_pred EEEEEecCCCChHHHHHHHHHhCCceEEEEEEEeeCCEEEEEEEEEcCCCC-CCHHHHHHHHHHHhh
Q 046178 449 MIRVQSENVNHPAAKLMSSLRDLDLQLHHASMSCVNDLMLQDIVVRVPDGL-RTEDALRSALLRRLD 514 (515)
Q Consensus 449 ~I~I~C~~r~glL~~Im~aLeeL~LdV~~a~~S~~~~~vl~~i~vkv~~~~-~s~e~L~~aL~~~l~ 514 (515)
.|.|.|+.++|++.+|+.+|.+.++.|.++.+.+.++.....|.+.-+++. .+. +-.+.|.++|.
T Consensus 2 ~l~i~~~d~~g~l~~i~~~l~~~~~~I~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~l~~~l~ 67 (70)
T cd04873 2 VVEVYAPDRPGLLADITRVLADLGLNIHDARISTTGERALDVFYVTDSDGRPLDP-ERIARLEEALE 67 (70)
T ss_pred EEEEEeCCCCCHHHHHHHHHHHCCCeEEEEEEeecCCEEEEEEEEECCCCCcCCH-HHHHHHHHHHH
Confidence 578999999999999999999999999999999887777778888766543 333 33444555543
No 25
>PRK05007 PII uridylyl-transferase; Provisional
Probab=96.79 E-value=0.0066 Score=71.44 Aligned_cols=70 Identities=16% Similarity=0.246 Sum_probs=59.2
Q ss_pred CCeEEEEEEecCCCChHHHHHHHHHhCCceEEEEEEEeeCCEEEEEEEEEcCCC-CCC---HHHHHHHHHHHhh
Q 046178 445 GSDAMIRVQSENVNHPAAKLMSSLRDLDLQLHHASMSCVNDLMLQDIVVRVPDG-LRT---EDALRSALLRRLD 514 (515)
Q Consensus 445 g~e~~I~I~C~~r~glL~~Im~aLeeL~LdV~~a~~S~~~~~vl~~i~vkv~~~-~~s---~e~L~~aL~~~l~ 514 (515)
+.-.+|+|.|.+|+|+|.+|.++|.++||+|++|.|+|.++++..+|-|.-.++ .++ .++|+++|..+|.
T Consensus 806 ~~~TvlEV~a~DRpGLL~~I~~~l~~~~l~I~~AkI~T~gera~DvFyV~~~~g~~l~~~~~~~l~~~L~~~l~ 879 (884)
T PRK05007 806 DRRSYMELIALDQPGLLARVGKIFADLGISLHGARITTIGERVEDLFILATADRRALNEELQQELRQRLTEALN 879 (884)
T ss_pred CCeEEEEEEeCCchHHHHHHHHHHHHCCcEEEEEEEeccCceEEEEEEEEcCCCCcCCHHHHHHHHHHHHHHHh
Confidence 445789999999999999999999999999999999999999999999976554 455 3566666666653
No 26
>PF13740 ACT_6: ACT domain; PDB: 1ZPV_A 3P96_A 1U8S_A.
Probab=96.75 E-value=0.0095 Score=48.87 Aligned_cols=64 Identities=16% Similarity=0.201 Sum_probs=54.6
Q ss_pred eEEEEEEecCCCChHHHHHHHHHhCCceEEEEEEEeeCCEEEEEEEEEcCCCCCCHHHHHHHHHHH
Q 046178 447 DAMIRVQSENVNHPAAKLMSSLRDLDLQLHHASMSCVNDLMLQDIVVRVPDGLRTEDALRSALLRR 512 (515)
Q Consensus 447 e~~I~I~C~~r~glL~~Im~aLeeL~LdV~~a~~S~~~~~vl~~i~vkv~~~~~s~e~L~~aL~~~ 512 (515)
.++|.+.+++|+|++..|..+|.+.|.++..++.++.++.+...+.+.+++. +.++|+.+|.+.
T Consensus 2 ~~vItv~G~DrpGiv~~v~~~l~~~g~ni~d~~~~~~~~~f~~~~~v~~~~~--~~~~l~~~L~~l 65 (76)
T PF13740_consen 2 QLVITVVGPDRPGIVAAVTGVLAEHGCNIEDSRQAVLGGRFTLIMLVSIPED--SLERLESALEEL 65 (76)
T ss_dssp EEEEEEEEE--TTHHHHHHHHHHCTT-EEEEEEEEEETTEEEEEEEEEESHH--HHHHHHHHHHHH
T ss_pred EEEEEEEecCCCcHHHHHHHHHHHCCCcEEEEEEEEEcCeEEEEEEEEeCcc--cHHHHHHHHHHH
Confidence 4789999999999999999999999999999999999999988899988843 677888888764
No 27
>cd04893 ACT_GcvR_1 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. This CD includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR int
Probab=96.39 E-value=0.032 Score=45.89 Aligned_cols=62 Identities=11% Similarity=0.078 Sum_probs=54.0
Q ss_pred EEEEEEecCCCChHHHHHHHHHhCCceEEEEEEEeeCCEEEEEEEEEcCCCCCCHHHHHHHHHH
Q 046178 448 AMIRVQSENVNHPAAKLMSSLRDLDLQLHHASMSCVNDLMLQDIVVRVPDGLRTEDALRSALLR 511 (515)
Q Consensus 448 ~~I~I~C~~r~glL~~Im~aLeeL~LdV~~a~~S~~~~~vl~~i~vkv~~~~~s~e~L~~aL~~ 511 (515)
+.|.+.|++++|+..+|-+.|.+.|.++..++....++.++..+.+.++. .+.++|+++|..
T Consensus 2 ~iltv~g~Dr~GiVa~vs~~la~~g~nI~d~~q~~~~~~F~m~~~~~~~~--~~~~~l~~~l~~ 63 (77)
T cd04893 2 LVISALGTDRPGILNELTRAVSESGCNILDSRMAILGTEFALTMLVEGSW--DAIAKLEAALPG 63 (77)
T ss_pred EEEEEEeCCCChHHHHHHHHHHHcCCCEEEceeeEEcCEEEEEEEEEecc--ccHHHHHHHHHH
Confidence 57899999999999999999999999999999999999888877777663 467888877654
No 28
>PRK01759 glnD PII uridylyl-transferase; Provisional
Probab=96.34 E-value=0.018 Score=67.55 Aligned_cols=69 Identities=17% Similarity=0.245 Sum_probs=58.1
Q ss_pred CCeEEEEEEecCCCChHHHHHHHHHhCCceEEEEEEEeeCCEEEEEEEEEcCCC-CCC---HHHHHHHHHHHh
Q 046178 445 GSDAMIRVQSENVNHPAAKLMSSLRDLDLQLHHASMSCVNDLMLQDIVVRVPDG-LRT---EDALRSALLRRL 513 (515)
Q Consensus 445 g~e~~I~I~C~~r~glL~~Im~aLeeL~LdV~~a~~S~~~~~vl~~i~vkv~~~-~~s---~e~L~~aL~~~l 513 (515)
+.-.+|+|.+++++|+|.+|.++|.++|++|+.|.|+|.++++..+|-|.-.+| .++ .++|+++|..+|
T Consensus 781 ~~~T~iev~a~DrpGLL~~I~~~l~~~~l~i~~AkI~T~gerv~D~Fyv~~~~g~~l~~~~~~~l~~~L~~~l 853 (854)
T PRK01759 781 QEQTEMELFALDRAGLLAQVSQVFSELNLNLLNAKITTIGEKAEDFFILTNQQGQALDEEERKALKSRLLSNL 853 (854)
T ss_pred CCeEEEEEEeCCchHHHHHHHHHHHHCCCEEEEEEEcccCceEEEEEEEECCCCCcCChHHHHHHHHHHHHHh
Confidence 344789999999999999999999999999999999999999999999986554 354 356666666654
No 29
>cd04875 ACT_F4HF-DF N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase). This CD includes the N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase) which catalyzes the hydrolysis of 10-formyltetrahydrofolate (formyl-FH4) to FH4 and formate. Formyl-FH4 hydrolase generates the formate that is used by purT-encoded 5'-phosphoribosylglycinamide transformylase for step three of de novo purine nucleotide synthesis. Formyl-FH4 hydrolase, a hexamer which is activated by methionine and inhibited by glycine, is proposed to regulate the balance FH4 and C1-FH4 in response to changing growth conditions. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.22 E-value=0.039 Score=44.60 Aligned_cols=63 Identities=8% Similarity=0.036 Sum_probs=49.5
Q ss_pred EEEEEecCCCChHHHHHHHHHhCCceEEEEEEEe--eCCEEEEEEEEEcCCCCCCHHHHHHHHHH
Q 046178 449 MIRVQSENVNHPAAKLMSSLRDLDLQLHHASMSC--VNDLMLQDIVVRVPDGLRTEDALRSALLR 511 (515)
Q Consensus 449 ~I~I~C~~r~glL~~Im~aLeeL~LdV~~a~~S~--~~~~vl~~i~vkv~~~~~s~e~L~~aL~~ 511 (515)
+|.|.|+.++|++.+|.+.|.++|+++...+..+ .++.+.-.+.+.++...++.++|+++|..
T Consensus 1 ii~v~g~D~~Giv~~it~~l~~~g~nI~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~l~~~l~~ 65 (74)
T cd04875 1 ILTLSCPDRPGIVAAVSGFLAEHGGNIVESDQFVDPDSGRFFMRVEFELEGFDLSREALEAAFAP 65 (74)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCCEEeeeeeecCCCCeEEEEEEEEeCCCCCCHHHHHHHHHH
Confidence 3789999999999999999999999999998885 33344444555566544678888877764
No 30
>cd04869 ACT_GcvR_2 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. This CD includes the second of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR in
Probab=96.22 E-value=0.049 Score=44.43 Aligned_cols=61 Identities=16% Similarity=0.196 Sum_probs=52.9
Q ss_pred EEEEecCCCChHHHHHHHHHhCCceEEEEEEEeeC------CEEEEEEEEEcCCCCCCHHHHHHHHHH
Q 046178 450 IRVQSENVNHPAAKLMSSLRDLDLQLHHASMSCVN------DLMLQDIVVRVPDGLRTEDALRSALLR 511 (515)
Q Consensus 450 I~I~C~~r~glL~~Im~aLeeL~LdV~~a~~S~~~------~~vl~~i~vkv~~~~~s~e~L~~aL~~ 511 (515)
|.|.|+.++|++.+|-+.|.+.|+++.+.+..+.+ +.+.-.+.+.+++ .++.++|+++|..
T Consensus 2 l~v~g~D~~Giv~~it~~l~~~~~nI~~~~~~~~~~~~~~~~~~~~~~~v~~p~-~~~~~~l~~~l~~ 68 (81)
T cd04869 2 VEVVGNDRPGIVHEVTQFLAQRNINIEDLSTETYSAPMSGTPLFKAQATLALPA-GTDLDALREELEE 68 (81)
T ss_pred EEEEeCCCCCHHHHHHHHHHHcCCCeEEeEeeeecCCCCCcceEEEEEEEecCC-CCCHHHHHHHHHH
Confidence 78999999999999999999999999999998887 6677777888775 4678888887765
No 31
>cd04872 ACT_1ZPV ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein. This CD, ACT_1ZPV, includes those single ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein (pdb structure 1ZPV). Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.22 E-value=0.021 Score=47.91 Aligned_cols=64 Identities=16% Similarity=0.201 Sum_probs=55.3
Q ss_pred EEEEEEecCCCChHHHHHHHHHhCCceEEEEEEEeeCCEEEEEEEEEcCCCCCCHHHHHHHHHH
Q 046178 448 AMIRVQSENVNHPAAKLMSSLRDLDLQLHHASMSCVNDLMLQDIVVRVPDGLRTEDALRSALLR 511 (515)
Q Consensus 448 ~~I~I~C~~r~glL~~Im~aLeeL~LdV~~a~~S~~~~~vl~~i~vkv~~~~~s~e~L~~aL~~ 511 (515)
..|.+.|++++|++.+|.+.|-+.|+++.+.+..+.++.+.-.+.+..+.-..+.++|+.+|..
T Consensus 2 ~vl~i~g~D~pGiva~vt~~la~~g~nI~~~~~~~~~~~f~~~~~v~~~~~~~~~~~L~~~l~~ 65 (88)
T cd04872 2 AVITVVGKDRVGIVAGVSTKLAELNVNILDISQTIMDGYFTMIMIVDISESNLDFAELQEELEE 65 (88)
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHcCCCEEechhHhhCCccEEEEEEEeCCCCCCHHHHHHHHHH
Confidence 5789999999999999999999999999999999988888888888877424577888877765
No 32
>PRK00194 hypothetical protein; Validated
Probab=96.21 E-value=0.023 Score=47.68 Aligned_cols=65 Identities=15% Similarity=0.223 Sum_probs=54.7
Q ss_pred eEEEEEEecCCCChHHHHHHHHHhCCceEEEEEEEeeCCEEEEEEEEEcCCCCCCHHHHHHHHHH
Q 046178 447 DAMIRVQSENVNHPAAKLMSSLRDLDLQLHHASMSCVNDLMLQDIVVRVPDGLRTEDALRSALLR 511 (515)
Q Consensus 447 e~~I~I~C~~r~glL~~Im~aLeeL~LdV~~a~~S~~~~~vl~~i~vkv~~~~~s~e~L~~aL~~ 511 (515)
...|.|.|++++|++.+|.+.|.+.|++|.+.+..+.++.+.-.+.+..+....+.++|++.|.+
T Consensus 3 ~~~ltv~g~DrpGiva~vt~~la~~g~nI~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~l~~ 67 (90)
T PRK00194 3 KAIITVIGKDKVGIIAGVSTVLAELNVNILDISQTIMDGYFTMIMLVDISESKKDFAELKEELEE 67 (90)
T ss_pred eEEEEEEcCCCCCHHHHHHHHHHHcCCCEEehhhHhhCCeeEEEEEEEecCCCCCHHHHHHHHHH
Confidence 46799999999999999999999999999999998888888777787776534567788876654
No 33
>cd04870 ACT_PSP_1 CT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). The ACT_PSP_1 CD includes the first of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.21 E-value=0.035 Score=45.21 Aligned_cols=63 Identities=19% Similarity=0.306 Sum_probs=55.9
Q ss_pred EEEEEecCCCChHHHHHHHHHhCCceEEEEEEEeeCCEEEEEEEEEcCCCCCCHHHHHHHHHHH
Q 046178 449 MIRVQSENVNHPAAKLMSSLRDLDLQLHHASMSCVNDLMLQDIVVRVPDGLRTEDALRSALLRR 512 (515)
Q Consensus 449 ~I~I~C~~r~glL~~Im~aLeeL~LdV~~a~~S~~~~~vl~~i~vkv~~~~~s~e~L~~aL~~~ 512 (515)
+|.|.+++|+|+..+|.++|.++++++...+.++.++.+.-.+.+.++.+ ++.++|+.+|...
T Consensus 1 ~vtv~G~DrpGiv~~vt~~la~~~~nI~dl~~~~~~~~f~~~~~v~~p~~-~~~~~l~~~l~~l 63 (75)
T cd04870 1 LITVTGPDRPGLTSALTEVLAAHGVRILDVGQAVIHGRLSLGILVQIPDS-ADSEALLKDLLFK 63 (75)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHCCCCEEecccEEEcCeeEEEEEEEcCCC-CCHHHHHHHHHHH
Confidence 37899999999999999999999999999999999998888888888776 6788999888764
No 34
>PRK04374 PII uridylyl-transferase; Provisional
Probab=96.18 E-value=0.041 Score=64.77 Aligned_cols=78 Identities=22% Similarity=0.211 Sum_probs=63.1
Q ss_pred ceEEEEEe--CCeEEEEEEecCCCChHHHHHHHHHhCCceEEEEEEEeeCCEEEEEEEEEcCCCC-CC---HHHHHHHHH
Q 046178 437 LEVETKIM--GSDAMIRVQSENVNHPAAKLMSSLRDLDLQLHHASMSCVNDLMLQDIVVRVPDGL-RT---EDALRSALL 510 (515)
Q Consensus 437 ~~VeV~i~--g~e~~I~I~C~~r~glL~~Im~aLeeL~LdV~~a~~S~~~~~vl~~i~vkv~~~~-~s---~e~L~~aL~ 510 (515)
+.|.+... +.-..|+|.+..++|+|.+|..+|..++|+|+.|.|+|.+++++.+|.|.-.++. .+ .++|+++|.
T Consensus 784 ~~V~~~~~~~~~~t~leI~a~DrpGLLa~Ia~~l~~~~l~I~~AkI~T~g~~a~D~F~V~d~~g~~~~~~~~~~l~~~L~ 863 (869)
T PRK04374 784 PRVEFSESAGGRRTRISLVAPDRPGLLADVAHVLRMQHLRVHDARIATFGERAEDQFQITDEHDRPLSESARQALRDALC 863 (869)
T ss_pred CeEEEeecCCCCeEEEEEEeCCcCcHHHHHHHHHHHCCCeEEEeEEEecCCEEEEEEEEECCCCCcCChHHHHHHHHHHH
Confidence 45555432 3346899999999999999999999999999999999999999999999865542 33 367777777
Q ss_pred HHhh
Q 046178 511 RRLD 514 (515)
Q Consensus 511 ~~l~ 514 (515)
.+|.
T Consensus 864 ~~l~ 867 (869)
T PRK04374 864 ACLD 867 (869)
T ss_pred HHhc
Confidence 7764
No 35
>PRK00275 glnD PII uridylyl-transferase; Provisional
Probab=96.15 E-value=0.037 Score=65.33 Aligned_cols=78 Identities=14% Similarity=0.181 Sum_probs=62.9
Q ss_pred ceEEEEEe--CCeEEEEEEecCCCChHHHHHHHHHhCCceEEEEEEEeeCCEEEEEEEEEcCCC-CC-C---HHHHHHHH
Q 046178 437 LEVETKIM--GSDAMIRVQSENVNHPAAKLMSSLRDLDLQLHHASMSCVNDLMLQDIVVRVPDG-LR-T---EDALRSAL 509 (515)
Q Consensus 437 ~~VeV~i~--g~e~~I~I~C~~r~glL~~Im~aLeeL~LdV~~a~~S~~~~~vl~~i~vkv~~~-~~-s---~e~L~~aL 509 (515)
+.|.+.-. ++-..|+|.+++++|+|.+|..+|..+||+|+.|.|+|.+++++.+|.|.-.++ .+ + .++|+++|
T Consensus 802 ~~V~i~~~~~~~~T~i~V~a~DrpGLLa~I~~~L~~~~l~I~~AkI~T~g~~v~D~F~V~d~~g~~l~~~~~~~~l~~~L 881 (895)
T PRK00275 802 TQVTISNDAQRPVTVLEIIAPDRPGLLARIGRIFLEFDLSLQNAKIATLGERVEDVFFITDADNQPLSDPQLCSRLQDAI 881 (895)
T ss_pred CEEEEEECCCCCeEEEEEEECCCCCHHHHHHHHHHHCCCEEEEeEEEecCCEEEEEEEEECCCCCCCCCHHHHHHHHHHH
Confidence 44555433 345689999999999999999999999999999999999999999999986554 33 3 35677888
Q ss_pred HHHhh
Q 046178 510 LRRLD 514 (515)
Q Consensus 510 ~~~l~ 514 (515)
.++|.
T Consensus 882 ~~~L~ 886 (895)
T PRK00275 882 CEQLD 886 (895)
T ss_pred HHHHh
Confidence 77764
No 36
>PRK05092 PII uridylyl-transferase; Provisional
Probab=95.90 E-value=0.066 Score=63.53 Aligned_cols=78 Identities=22% Similarity=0.199 Sum_probs=63.0
Q ss_pred ceEEEEEe--CCeEEEEEEecCCCChHHHHHHHHHhCCceEEEEEEEeeCCEEEEEEEEEcCCC-CC-C---HHHHHHHH
Q 046178 437 LEVETKIM--GSDAMIRVQSENVNHPAAKLMSSLRDLDLQLHHASMSCVNDLMLQDIVVRVPDG-LR-T---EDALRSAL 509 (515)
Q Consensus 437 ~~VeV~i~--g~e~~I~I~C~~r~glL~~Im~aLeeL~LdV~~a~~S~~~~~vl~~i~vkv~~~-~~-s---~e~L~~aL 509 (515)
+.|.+.-. +....|.|.|++++|+|.+|..+|.++|++|.+|.++|.++.+..+|.+.-.++ .+ + .++|+++|
T Consensus 831 ~~V~~~~~~s~~~t~i~I~~~DrpGLl~~I~~~l~~~gl~I~~A~I~T~~~~~~D~F~v~d~~g~~i~~~~~~~~l~~~L 910 (931)
T PRK05092 831 PRVTIDNEASNRFTVIEVNGRDRPGLLYDLTRALSDLNLNIASAHIATYGERAVDVFYVTDLFGLKITNEARQAAIRRAL 910 (931)
T ss_pred CEEEEeeCCCCCeEEEEEEECCcCcHHHHHHHHHHHCCceEEEEEEEEcCCEEEEEEEEeCCCCCcCCCHHHHHHHHHHH
Confidence 45555443 334689999999999999999999999999999999999999999999986554 23 3 35678888
Q ss_pred HHHhh
Q 046178 510 LRRLD 514 (515)
Q Consensus 510 ~~~l~ 514 (515)
...|.
T Consensus 911 ~~~L~ 915 (931)
T PRK05092 911 LAALA 915 (931)
T ss_pred HHHhc
Confidence 77763
No 37
>PRK03381 PII uridylyl-transferase; Provisional
Probab=95.90 E-value=0.053 Score=63.05 Aligned_cols=65 Identities=15% Similarity=0.224 Sum_probs=55.0
Q ss_pred eEEEEEEecCCCChHHHHHHHHHhCCceEEEEEEEeeCCEEEEEEEEEcCCC-CCCHHHHHHHHHHHh
Q 046178 447 DAMIRVQSENVNHPAAKLMSSLRDLDLQLHHASMSCVNDLMLQDIVVRVPDG-LRTEDALRSALLRRL 513 (515)
Q Consensus 447 e~~I~I~C~~r~glL~~Im~aLeeL~LdV~~a~~S~~~~~vl~~i~vkv~~~-~~s~e~L~~aL~~~l 513 (515)
-..|+|.|+.++|+|.+|..+|..++++|++|.++|.++.++.+|.|.-.++ .++. + .+.|.++|
T Consensus 707 ~t~i~V~a~DrpGLla~Ia~~L~~~~lnI~~AkI~T~g~~a~D~F~V~d~~g~~~~~-~-~~~l~~~L 772 (774)
T PRK03381 707 ATVLEVRAADRPGLLARLARALERAGVDVRWARVATLGADVVDVFYVTGAAGGPLAD-A-RAAVEQAV 772 (774)
T ss_pred eEEEEEEeCCchhHHHHHHHHHHHCCCeEEEEEEeecCCeEEEEEEEECCCCCcCch-H-HHHHHHHh
Confidence 4789999999999999999999999999999999999999999999987665 3443 2 45555544
No 38
>PF01842 ACT: ACT domain; InterPro: IPR002912 The ACT domain is found in a variety of contexts and is proposed to be a conserved regulatory binding fold. ACT domains are linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. The archetypical ACT domain is the C-terminal regulatory domain of 3-phosphoglycerate dehydrogenase (3PGDH), which folds with a ferredoxin-like topology. A pair of ACT domains form an eight-stranded antiparallel sheet with two molecules of allosteric inhibitor serine bound in the interface. Biochemical exploration of a few other proteins containing ACT domains supports the suggestions that these domains contain the archetypical ACT structure [].; GO: 0016597 amino acid binding, 0008152 metabolic process; PDB: 3L76_B 2F06_B 3NRB_C 1Y7P_C 2QMX_A 2DT9_A 2ZHO_D 3K5P_A 3TVI_K 3C1M_C ....
Probab=95.88 E-value=0.024 Score=43.81 Aligned_cols=37 Identities=22% Similarity=0.189 Sum_probs=35.3
Q ss_pred EEEEEecCCCChHHHHHHHHHhCCceEEEEEEEeeCC
Q 046178 449 MIRVQSENVNHPAAKLMSSLRDLDLQLHHASMSCVND 485 (515)
Q Consensus 449 ~I~I~C~~r~glL~~Im~aLeeL~LdV~~a~~S~~~~ 485 (515)
.|.|.|++++|.|.+|..+|.+++++|.++.....++
T Consensus 2 ~v~v~~~drpG~l~~v~~~la~~~inI~~~~~~~~~~ 38 (66)
T PF01842_consen 2 RVRVIVPDRPGILADVTEILADHGINIDSISQSSDKD 38 (66)
T ss_dssp EEEEEEETSTTHHHHHHHHHHHTTEEEEEEEEEEESS
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCCHHHeEEEecCC
Confidence 5889999999999999999999999999999999887
No 39
>PRK03381 PII uridylyl-transferase; Provisional
Probab=95.45 E-value=0.12 Score=60.08 Aligned_cols=70 Identities=21% Similarity=0.179 Sum_probs=60.4
Q ss_pred CCeEEEEEEecCCCChHHHHHHHHHhCCceEEEEEEEeeCCEEEEEEEEEcCCCC-CCHHHHHHHHHHHhh
Q 046178 445 GSDAMIRVQSENVNHPAAKLMSSLRDLDLQLHHASMSCVNDLMLQDIVVRVPDGL-RTEDALRSALLRRLD 514 (515)
Q Consensus 445 g~e~~I~I~C~~r~glL~~Im~aLeeL~LdV~~a~~S~~~~~vl~~i~vkv~~~~-~s~e~L~~aL~~~l~ 514 (515)
.+.+.|.|.|++++|++++|..+|..+|++|+.|++.+.++.++.+|.|.-+++. ...++|+++|.+.|.
T Consensus 597 ~~~~~V~V~~~DrpGLfa~i~~vL~~~glnI~dA~i~t~dg~~ld~F~V~~~~~~~~~~~~l~~~L~~~L~ 667 (774)
T PRK03381 597 PHMVEVTVVAPDRRGLLSKAAGVLALHRLRVRSASVRSHDGVAVLEFVVSPRFGSPPDAALLRQDLRRALD 667 (774)
T ss_pred CCeEEEEEEecCCccHHHHHHHHHHHCCCeEEEeEEEecCCEEEEEEEEECCCCCcchHHHHHHHHHHHHc
Confidence 3557899999999999999999999999999999999989999999999865553 446788888887764
No 40
>PF13291 ACT_4: ACT domain; PDB: 2KO1_B 3IBW_A.
Probab=95.37 E-value=0.12 Score=42.29 Aligned_cols=51 Identities=14% Similarity=0.200 Sum_probs=43.7
Q ss_pred eEEEEEEecCCCChHHHHHHHHHhCCceEEEEEEEee--CCEEEEEEEEEcCC
Q 046178 447 DAMIRVQSENVNHPAAKLMSSLRDLDLQLHHASMSCV--NDLMLQDIVVRVPD 497 (515)
Q Consensus 447 e~~I~I~C~~r~glL~~Im~aLeeL~LdV~~a~~S~~--~~~vl~~i~vkv~~ 497 (515)
.+.|+|.+.+++|+|.+|..+|.+.++.+.++++... ++...-.|.+++.+
T Consensus 6 ~~~l~i~~~dr~GlL~dI~~~i~~~~~nI~~i~~~~~~~~~~~~~~l~v~V~d 58 (80)
T PF13291_consen 6 PVRLRIEAEDRPGLLADITSVISENGVNIRSINARTNKDDGTARITLTVEVKD 58 (80)
T ss_dssp EEEEEEEEE--TTHHHHHHHHHHCSSSEEEEEEEEE--ETTEEEEEEEEEESS
T ss_pred EEEEEEEEEcCCCHHHHHHHHHHHCCCCeEEEEeEEeccCCEEEEEEEEEECC
Confidence 4678999999999999999999999999999999984 67888899999874
No 41
>PRK03059 PII uridylyl-transferase; Provisional
Probab=95.18 E-value=0.092 Score=61.77 Aligned_cols=67 Identities=15% Similarity=0.247 Sum_probs=55.7
Q ss_pred CeEEEEEEecCCCChHHHHHHHHHhCCceEEEEEEEeeCCEEEEEEEEEcCCCCCC---HHHHHHHHHHHh
Q 046178 446 SDAMIRVQSENVNHPAAKLMSSLRDLDLQLHHASMSCVNDLMLQDIVVRVPDGLRT---EDALRSALLRRL 513 (515)
Q Consensus 446 ~e~~I~I~C~~r~glL~~Im~aLeeL~LdV~~a~~S~~~~~vl~~i~vkv~~~~~s---~e~L~~aL~~~l 513 (515)
+-..|+|.|++++|+|.+|..+|..++|+|+.|.|+|.++.++.+|.|. .....+ .+.|+++|.++|
T Consensus 785 ~~T~i~V~a~DrpGLLa~Ia~~L~~~~l~I~~AkI~T~~~~v~DvF~V~-~~~~~~~~~~~~l~~~L~~~L 854 (856)
T PRK03059 785 QYYILSVSANDRPGLLYAIARVLAEHRVSVHTAKINTLGERVEDTFLID-GSGLSDNRLQIQLETELLDAL 854 (856)
T ss_pred CEEEEEEEeCCcchHHHHHHHHHHHCCCeEEEEEEeecCCEEEEEEEEc-CCCCCCHHHHHHHHHHHHHHh
Confidence 4568999999999999999999999999999999999999999999994 222223 456777776665
No 42
>PRK01759 glnD PII uridylyl-transferase; Provisional
Probab=95.04 E-value=0.16 Score=59.87 Aligned_cols=78 Identities=21% Similarity=0.260 Sum_probs=60.8
Q ss_pred ceEEEEE--eCCeEEEEEEecCCCChHHHHHHHHHhCCceEEEEEEEe-eCCEEEEEEEEEcCCC-CCCH---HHHHHHH
Q 046178 437 LEVETKI--MGSDAMIRVQSENVNHPAAKLMSSLRDLDLQLHHASMSC-VNDLMLQDIVVRVPDG-LRTE---DALRSAL 509 (515)
Q Consensus 437 ~~VeV~i--~g~e~~I~I~C~~r~glL~~Im~aLeeL~LdV~~a~~S~-~~~~vl~~i~vkv~~~-~~s~---e~L~~aL 509 (515)
+.|.+.- ..+...|.|.|++++|+|.+|..+|..+||+|+.|.+.+ .+|.++.+|.|.-.++ .++. +.|+++|
T Consensus 665 ~~V~i~~~~~~~~t~V~V~~~DrpGLfa~Ia~~L~~~~L~I~~A~I~T~~~g~alD~F~V~d~~g~~~~~~~~~~l~~~L 744 (854)
T PRK01759 665 LLVKISNRFSRGGTEIFIYCQDQANLFLKVVSTIGAKKLSIHDAQIITSQDGYVLDSFIVTELNGKLLEFDRRRQLEQAL 744 (854)
T ss_pred CEEEEEecCCCCeEEEEEEecCCccHHHHHHHHHHHCCCeEEEEEEEEccCCEEEEEEEEeCCCCCCCCHHHHHHHHHHH
Confidence 4444533 234568999999999999999999999999999999977 8899999999986554 3443 3566777
Q ss_pred HHHhh
Q 046178 510 LRRLD 514 (515)
Q Consensus 510 ~~~l~ 514 (515)
.++|.
T Consensus 745 ~~aL~ 749 (854)
T PRK01759 745 TKALN 749 (854)
T ss_pred HHHHc
Confidence 66653
No 43
>TIGR01693 UTase_glnD [Protein-PII] uridylyltransferase. This model describes GlnD, the uridylyltransferase/uridylyl-removing enzyme for the nitrogen regulatory protein PII. Not all homologs of PII share the property of uridylyltransferase modification on the characteristic Tyr residue (see Prosite pattern PS00496 and document PDOC00439), but the modification site is preserved in the PII homolog of all species with a member of this family.
Probab=94.99 E-value=0.11 Score=61.08 Aligned_cols=68 Identities=18% Similarity=0.183 Sum_probs=57.4
Q ss_pred CeEEEEEEecCCCChHHHHHHHHHhCCceEEEEEEEeeCCEEEEEEEEEcCCC-CCC---HHHHHHHHHHHh
Q 046178 446 SDAMIRVQSENVNHPAAKLMSSLRDLDLQLHHASMSCVNDLMLQDIVVRVPDG-LRT---EDALRSALLRRL 513 (515)
Q Consensus 446 ~e~~I~I~C~~r~glL~~Im~aLeeL~LdV~~a~~S~~~~~vl~~i~vkv~~~-~~s---~e~L~~aL~~~l 513 (515)
.-.+|+|.|.+++|+|.+|.++|.++|++|++|.++|.++.+...|.+....+ ..+ .+.|+++|..+|
T Consensus 778 ~~t~~~v~~~DrpGll~~i~~~l~~~~~~i~~a~i~t~~~~~~d~F~v~~~~g~~~~~~~~~~l~~~L~~~l 849 (850)
T TIGR01693 778 KATIMEVRALDRPGLLARVGRTLEELGLSIQSAKITTFGEKAEDVFYVTDLFGLKLTDEEEQRLLEVLAASV 849 (850)
T ss_pred CeEEEEEEECCccHHHHHHHHHHHHCCCeEEEEEEEecCccceeEEEEECCCCCCCCHHHHHHHHHHHHHHh
Confidence 34789999999999999999999999999999999999999999999986554 344 456666666654
No 44
>PRK05007 PII uridylyl-transferase; Provisional
Probab=94.89 E-value=0.19 Score=59.43 Aligned_cols=78 Identities=22% Similarity=0.234 Sum_probs=60.4
Q ss_pred ceEEEEEe--CCeEEEEEEecCCCChHHHHHHHHHhCCceEEEEEEEeeCC-EEEEEEEEEcCCC-CCCH---HHHHHHH
Q 046178 437 LEVETKIM--GSDAMIRVQSENVNHPAAKLMSSLRDLDLQLHHASMSCVND-LMLQDIVVRVPDG-LRTE---DALRSAL 509 (515)
Q Consensus 437 ~~VeV~i~--g~e~~I~I~C~~r~glL~~Im~aLeeL~LdV~~a~~S~~~~-~vl~~i~vkv~~~-~~s~---e~L~~aL 509 (515)
+-|.+... .+...|.|.|++++|+|.+|..+|..++|+|+.|.|.+.++ .++.+|.|.-.++ .++. +.|+++|
T Consensus 689 p~V~i~~~~~~~~t~V~V~a~DrpGLfa~Ia~~La~~~L~I~~A~I~T~~dg~alD~F~V~d~~g~~~~~~~~~~I~~~L 768 (884)
T PRK05007 689 PLVLLSKQATRGGTEIFIWSPDRPYLFAAVCAELDRRNLSVHDAQIFTSRDGMAMDTFIVLEPDGSPLSQDRHQVIRKAL 768 (884)
T ss_pred CeEEEEecCCCCeEEEEEEecCCcCHHHHHHHHHHHCCCEEEEEEEEEcCCCeEEEEEEEECCCCCCCCHHHHHHHHHHH
Confidence 44444432 34678999999999999999999999999999999887655 9999999986654 3443 3477777
Q ss_pred HHHhh
Q 046178 510 LRRLD 514 (515)
Q Consensus 510 ~~~l~ 514 (515)
.++|.
T Consensus 769 ~~aL~ 773 (884)
T PRK05007 769 EQALT 773 (884)
T ss_pred HHHHc
Confidence 77663
No 45
>COG2844 GlnD UTP:GlnB (protein PII) uridylyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=94.74 E-value=0.11 Score=59.77 Aligned_cols=77 Identities=25% Similarity=0.317 Sum_probs=61.9
Q ss_pred cceEEEEEe--CCeEEEEEEecCCCChHHHHHHHHHhCCceEEEEEEEeeCCEEEEEEEEEcCCC-CCCHHHHHHHHHHH
Q 046178 436 NLEVETKIM--GSDAMIRVQSENVNHPAAKLMSSLRDLDLQLHHASMSCVNDLMLQDIVVRVPDG-LRTEDALRSALLRR 512 (515)
Q Consensus 436 ~~~VeV~i~--g~e~~I~I~C~~r~glL~~Im~aLeeL~LdV~~a~~S~~~~~vl~~i~vkv~~~-~~s~e~L~~aL~~~ 512 (515)
.|.|++.-. .+.-+|+|.+..|+|+|.+|-.+|.+++|++++|.|+|.+.++..+|.+....+ .++. ++++.+.++
T Consensus 778 ~p~v~i~~t~~~~~t~lEv~alDRpGLLa~v~~v~~dl~l~i~~AkItT~GErveD~F~vt~~~~~~l~~-~~~q~l~~~ 856 (867)
T COG2844 778 PPRVTILPTASNDKTVLEVRALDRPGLLAALAGVFADLGLSLHSAKITTFGERVEDVFIVTDADGQALNA-ELRQSLLQR 856 (867)
T ss_pred CCceeeccccCCCceEEEEEeCCcccHHHHHHHHHHhcccceeeeeeccccccceeEEEEeccccccCCH-HHHHHHHHH
Confidence 355665433 345689999999999999999999999999999999999999999999987665 3443 556666655
Q ss_pred h
Q 046178 513 L 513 (515)
Q Consensus 513 l 513 (515)
+
T Consensus 857 l 857 (867)
T COG2844 857 L 857 (867)
T ss_pred H
Confidence 4
No 46
>TIGR01693 UTase_glnD [Protein-PII] uridylyltransferase. This model describes GlnD, the uridylyltransferase/uridylyl-removing enzyme for the nitrogen regulatory protein PII. Not all homologs of PII share the property of uridylyltransferase modification on the characteristic Tyr residue (see Prosite pattern PS00496 and document PDOC00439), but the modification site is preserved in the PII homolog of all species with a member of this family.
Probab=94.69 E-value=0.16 Score=59.79 Aligned_cols=70 Identities=20% Similarity=0.203 Sum_probs=57.3
Q ss_pred CCeEEEEEEecCCCChHHHHHHHHHhCCceEEEEEEE-eeCCEEEEEEEEEcCCC-CCC----HHHHHHHHHHHhh
Q 046178 445 GSDAMIRVQSENVNHPAAKLMSSLRDLDLQLHHASMS-CVNDLMLQDIVVRVPDG-LRT----EDALRSALLRRLD 514 (515)
Q Consensus 445 g~e~~I~I~C~~r~glL~~Im~aLeeL~LdV~~a~~S-~~~~~vl~~i~vkv~~~-~~s----~e~L~~aL~~~l~ 514 (515)
.....|.|.+++++|+|.+|..+|..+||+|+.|.|. +.++.++.+|.|.-.++ ..+ .+.|+++|.++|.
T Consensus 666 ~~~t~i~V~~~DrpgLla~i~~~L~~~~l~I~~A~I~tt~~g~~lD~F~V~~~~g~~~~~~~~~~~i~~~L~~~L~ 741 (850)
T TIGR01693 666 SGGTEVFIYAPDQPGLFAKVAGALAMLSLSVHDAQVNTTKDGVALDTFVVQDLFGSPPAAERVFQELLQGLVDVLA 741 (850)
T ss_pred CCeEEEEEEeCCCCcHHHHHHHHHHHCCCeEEEEEEEEecCCEEEEEEEEECCCCCCCCcHHHHHHHHHHHHHHHc
Confidence 3456799999999999999999999999999999999 77889999999987665 233 3346667666653
No 47
>cd04887 ACT_MalLac-Enz ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI and related domains. The ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI, a malolactic enzyme (MalLac-Enz) which converts malate to lactate, and other related ACT domains. The yqkJ product is predicted to convert malate directly to lactate, as opposed to related malic enzymes that convert malate to pyruvate. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=94.54 E-value=0.27 Score=39.23 Aligned_cols=49 Identities=14% Similarity=0.245 Sum_probs=42.1
Q ss_pred EEEEecCCCChHHHHHHHHHhCCceEEEEEEEeeC-CEEEEEEEEEcCCC
Q 046178 450 IRVQSENVNHPAAKLMSSLRDLDLQLHHASMSCVN-DLMLQDIVVRVPDG 498 (515)
Q Consensus 450 I~I~C~~r~glL~~Im~aLeeL~LdV~~a~~S~~~-~~vl~~i~vkv~~~ 498 (515)
|+|.++.++|.|.+|+.+|.+.|.++.++++.... +.....|.+++.+.
T Consensus 2 l~v~~~d~~g~L~~i~~~i~~~~~nI~~v~~~~~~~~~~~~~~~vev~~~ 51 (74)
T cd04887 2 LRLELPNRPGMLGRVTTAIGEAGGDIGAIDLVEQGRDYTVRDITVDAPSE 51 (74)
T ss_pred EEEEeCCCCchHHHHHHHHHHcCCcEEEEEEEEecCCEEEEEEEEEcCCH
Confidence 78999999999999999999999999999987764 56666788887653
No 48
>cd04886 ACT_ThrD-II-like C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. This CD includes the C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. The Escherichia coli tdcB gene product, ThrD-II, anaerobically catalyzes the pyridoxal phosphate-dependent dehydration of L-threonine and L-serine to ammonia and to alpha-ketobutyrate and pyruvate, respectively. Tetrameric ThrD-II is subject to allosteric activation by AMP, inhibition by alpha-keto acids, and catabolite inactivation by several metabolites of glycolysis and the citric acid cycle. Also included in this CD are N-terminal ACT domains present in smaller (~170 a.a.) archaeal proteins of unknown function. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=94.54 E-value=0.2 Score=38.92 Aligned_cols=60 Identities=13% Similarity=0.145 Sum_probs=43.2
Q ss_pred EEEEecCCCChHHHHHHHHHhCCceEEEEEEEee-----CCEEEEEEEEEcCCCCCCHHHHHHHHH
Q 046178 450 IRVQSENVNHPAAKLMSSLRDLDLQLHHASMSCV-----NDLMLQDIVVRVPDGLRTEDALRSALL 510 (515)
Q Consensus 450 I~I~C~~r~glL~~Im~aLeeL~LdV~~a~~S~~-----~~~vl~~i~vkv~~~~~s~e~L~~aL~ 510 (515)
++|.++.++|.|.+|+++|.+.++++.+...... .+.....+.+++.+ .-..+++..+|.
T Consensus 1 ~~v~~~d~~G~L~~i~~~i~~~~~nI~~i~~~~~~~~~~~~~~~~~i~v~~~~-~~~l~~l~~~l~ 65 (73)
T cd04886 1 LRVELPDRPGQLAKLLAVIAEAGANIIEVSHDRAFKTLPLGEVEVELTLETRG-AEHIEEIIAALR 65 (73)
T ss_pred CEEEeCCCCChHHHHHHHHHHcCCCEEEEEEEeccCCCCCceEEEEEEEEeCC-HHHHHHHHHHHH
Confidence 4688999999999999999999999998887754 35555566776643 112335555543
No 49
>PRK03059 PII uridylyl-transferase; Provisional
Probab=94.17 E-value=0.26 Score=58.14 Aligned_cols=69 Identities=14% Similarity=0.164 Sum_probs=56.7
Q ss_pred CCeEEEEEEecCCCChHHHHHHHHHhCCceEEEEEE-EeeCCEEEEEEEEEcCCCCC-C---HHHHHHHHHHHh
Q 046178 445 GSDAMIRVQSENVNHPAAKLMSSLRDLDLQLHHASM-SCVNDLMLQDIVVRVPDGLR-T---EDALRSALLRRL 513 (515)
Q Consensus 445 g~e~~I~I~C~~r~glL~~Im~aLeeL~LdV~~a~~-S~~~~~vl~~i~vkv~~~~~-s---~e~L~~aL~~~l 513 (515)
.+...|-|.|++++|+|++|.-+|..+||+|+.|.+ ++.+|+++.+|.|.-+++.. . .++|+++|.++|
T Consensus 676 ~~~~~v~i~~~d~~gLFa~i~g~l~~~~l~I~~A~i~t~~~g~~ld~f~V~~~~~~~~~~~~~~~i~~~l~~~l 749 (856)
T PRK03059 676 GEGLQVMVYTPDQPDLFARICGYFDRAGFSILDARVHTTRHGYALDTFQVLDPEEDVHYRDIINLVEHELAERL 749 (856)
T ss_pred CCeEEEEEEecCCCcHHHHHHHHHHHCCCceeeeEEEEcCCCeEEEEEEEeCCCCCCChHHHHHHHHHHHHHHH
Confidence 355689999999999999999999999999999999 56788999999998665543 2 455666666665
No 50
>PRK00275 glnD PII uridylyl-transferase; Provisional
Probab=93.99 E-value=0.27 Score=58.19 Aligned_cols=69 Identities=19% Similarity=0.302 Sum_probs=55.9
Q ss_pred CeEEEEEEecCCCChHHHHHHHHHhCCceEEEEEE-EeeCCEEEEEEEEEcCCCC--CC----HHHHHHHHHHHhh
Q 046178 446 SDAMIRVQSENVNHPAAKLMSSLRDLDLQLHHASM-SCVNDLMLQDIVVRVPDGL--RT----EDALRSALLRRLD 514 (515)
Q Consensus 446 ~e~~I~I~C~~r~glL~~Im~aLeeL~LdV~~a~~-S~~~~~vl~~i~vkv~~~~--~s----~e~L~~aL~~~l~ 514 (515)
+...|-|.|++++|+|++|..+|..+||+|+.|.+ ++.+|.++.+|.|.-.++. .. .+.|+++|.++|.
T Consensus 703 ~~t~V~V~~~DrpgLFa~i~g~L~~~~lnI~~A~I~Tt~dg~alD~F~V~d~~g~~~~~~~~r~~~i~~~L~~~L~ 778 (895)
T PRK00275 703 GGTQIFIYAPDQHDFFAATVAAMDQLNLNIHDARIITSSSQFTLDTYIVLDDDGEPIGDNPARIEQIREGLTEALR 778 (895)
T ss_pred CeEEEEEEeCCCCcHHHHHHHHHHHCCCeEEEEEEEEcCCCeEEEEEEEeCCCCCCccchHHHHHHHHHHHHHHHc
Confidence 45689999999999999999999999999999998 5667899999999866553 22 2446777776653
No 51
>cd04894 ACT_ACR-like_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the N-terminal ACT domain of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=93.96 E-value=0.25 Score=39.58 Aligned_cols=63 Identities=13% Similarity=0.085 Sum_probs=48.6
Q ss_pred EEEEEecCCCChHHHHHHHHHhCCceEEEEEEEeeCCEEEEEEEEEcCCC--CCCHHHHHHHHHH
Q 046178 449 MIRVQSENVNHPAAKLMSSLRDLDLQLHHASMSCVNDLMLQDIVVRVPDG--LRTEDALRSALLR 511 (515)
Q Consensus 449 ~I~I~C~~r~glL~~Im~aLeeL~LdV~~a~~S~~~~~vl~~i~vkv~~~--~~s~e~L~~aL~~ 511 (515)
.|.|.||.+.|+--+|...+-+.||.+....+|+.+.--+-.|-|.-... .+.=+-||+.|++
T Consensus 2 vitvnCPDktGLgcdlcr~il~fGl~i~rgd~sTDGkWCyiv~wVv~~~~~~~~rW~lLK~RL~~ 66 (69)
T cd04894 2 VITINCPDKTGLGCDLCRIILEFGLNITRGDDSTDGRWCYIVFWVVPRPPSIKVRWDLLKNRLMS 66 (69)
T ss_pred EEEEeCCCccCcccHHHHHHHHhceEEEecccccCCcEEEEEEEEecCCCCCcccHHHHHHHHHh
Confidence 58999999999999999999999999999999998884444444432221 3456667777665
No 52
>cd04888 ACT_PheB-BS C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and related domains. This CD includes the C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and other related ACT domains. In B. subtilis, the upstream gene of pheB, pheA encodes prephenate dehydratase (PDT). The presumed product of the pheB gene is chorismate mutase (CM). The deduced product of the B. subtilis pheB gene, however, has no significant homology to the CM portion of the bifunctional CM-PDT of Escherichia coli. The presence of an ACT domain lends support to the prediction that these proteins function as a phenylalanine-binding regulatory protein. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=93.78 E-value=0.31 Score=38.92 Aligned_cols=61 Identities=10% Similarity=0.041 Sum_probs=44.8
Q ss_pred EEEEEecCCCChHHHHHHHHHhCCceEEEEEEEee-CCEEEEEEEEEcCCCCCCHHHHHHHH
Q 046178 449 MIRVQSENVNHPAAKLMSSLRDLDLQLHHASMSCV-NDLMLQDIVVRVPDGLRTEDALRSAL 509 (515)
Q Consensus 449 ~I~I~C~~r~glL~~Im~aLeeL~LdV~~a~~S~~-~~~vl~~i~vkv~~~~~s~e~L~~aL 509 (515)
.|+|.++.++|.+.+|+++|.+.+.++...+.+.. ++..--.|.+.+.+.....++|..+|
T Consensus 2 ~l~i~~~d~~g~l~~I~~~la~~~inI~~i~~~~~~~~~~~i~~~v~v~~~~~~l~~l~~~L 63 (76)
T cd04888 2 TLSLLLEHRPGVLSKVLNTIAQVRGNVLTINQNIPIHGRANVTISIDTSTMNGDIDELLEEL 63 (76)
T ss_pred EEEEEecCCCchHHHHHHHHHHcCCCEEEEEeCCCCCCeEEEEEEEEcCchHHHHHHHHHHH
Confidence 57899999999999999999999999999987654 35555667777654322334444443
No 53
>PRK04435 hypothetical protein; Provisional
Probab=92.95 E-value=0.55 Score=43.67 Aligned_cols=68 Identities=12% Similarity=0.062 Sum_probs=53.7
Q ss_pred EeCCeEEEEEEecCCCChHHHHHHHHHhCCceEEEEEEEee-CCEEEEEEEEEcCCCCCCHHHHHHHHH
Q 046178 443 IMGSDAMIRVQSENVNHPAAKLMSSLRDLDLQLHHASMSCV-NDLMLQDIVVRVPDGLRTEDALRSALL 510 (515)
Q Consensus 443 i~g~e~~I~I~C~~r~glL~~Im~aLeeL~LdV~~a~~S~~-~~~vl~~i~vkv~~~~~s~e~L~~aL~ 510 (515)
..|..+.|.+.+.+++|+|.+|+++|.+.+.+|...+.+.. ++...-+|.+++.+.....++|..+|.
T Consensus 65 ~~~r~vtL~i~l~Dr~GlLs~Il~~IA~~~aNIltI~q~i~~~g~a~vs~tVevs~~~~~L~~Li~~L~ 133 (147)
T PRK04435 65 VKGKIITLSLLLEDRSGTLSKVLNVIAEAGGNILTINQSIPLQGRANVTISIDTSSMEGDIDELLEKLR 133 (147)
T ss_pred CCCcEEEEEEEEecCCCHHHHHHHHHHHcCCCeEEEEEEcCCCCEEEEEEEEEeCChHHHHHHHHHHHH
Confidence 45788999999999999999999999999999999887653 566667788887654334555555543
No 54
>KOG4447 consensus Transcription factor TWIST [Transcription]
Probab=92.88 E-value=0.045 Score=50.89 Aligned_cols=51 Identities=33% Similarity=0.427 Sum_probs=45.7
Q ss_pred CCccchHHHHHHHHHHHHHHHHHhccCCC--CCCCChhhHHHHHHHHHHHHHH
Q 046178 340 TPLNHVEAERQRREKLNHRFYALRAVVPN--VSRMDKASLLSDAVSYIRELKV 390 (515)
Q Consensus 340 ~~~~H~~~ER~RR~kln~~f~~LrslvP~--~~k~dKasIL~daI~YIk~Lq~ 390 (515)
.+..|++.||||-..||+.|.+||.++|. ..|.+|.--|.-|..||..|-+
T Consensus 78 qrv~anvrerqRtqsLn~AF~~lr~iiptlPsdklSkiqtLklA~ryidfl~~ 130 (173)
T KOG4447|consen 78 QRVMANVRERQRTQSLNEAFAALRKIIPTLPSDKLSKIQTLKLAARYIDFLYQ 130 (173)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHhhcCCCCccccccccchhhcccCCchhhh
Confidence 57789999999999999999999999996 5788888889999999998864
No 55
>PRK05092 PII uridylyl-transferase; Provisional
Probab=92.84 E-value=0.65 Score=55.29 Aligned_cols=78 Identities=12% Similarity=0.060 Sum_probs=60.1
Q ss_pred cceEEEEEe--CCeEEEEEEecCCCChHHHHHHHHHhCCceEEEEEEEe-eCCEEEEEEEEEcCCCC--CC---HHHHHH
Q 046178 436 NLEVETKIM--GSDAMIRVQSENVNHPAAKLMSSLRDLDLQLHHASMSC-VNDLMLQDIVVRVPDGL--RT---EDALRS 507 (515)
Q Consensus 436 ~~~VeV~i~--g~e~~I~I~C~~r~glL~~Im~aLeeL~LdV~~a~~S~-~~~~vl~~i~vkv~~~~--~s---~e~L~~ 507 (515)
.+.|.++.. .+...|.|.|+.++|+|.+|..+|..+|++|+.|.+.+ .+++++.+|.|.-+++. .+ .+.|++
T Consensus 719 ~~~v~~~~~~~~~~t~v~I~~~Dr~GLfa~i~~~L~~~glnI~~A~I~t~~dg~alD~F~V~~~~g~~~~~~~~~~~l~~ 798 (931)
T PRK05092 719 PLATEVRPDPARGVTEVTVLAADHPGLFSRIAGACAAAGANIVDARIFTTTDGRALDTFWIQDAFGRDEDEPRRLARLAK 798 (931)
T ss_pred CcEEEEEecCCCCeEEEEEEeCCCCcHHHHHHHHHHHCCCcEEEEEEEEecCCeEEEEEEEECCCCCCCCCHHHHHHHHH
Confidence 345555443 34678999999999999999999999999999999887 67789999999865552 23 455666
Q ss_pred HHHHHh
Q 046178 508 ALLRRL 513 (515)
Q Consensus 508 aL~~~l 513 (515)
+|.+.+
T Consensus 799 ~L~~~l 804 (931)
T PRK05092 799 AIEDAL 804 (931)
T ss_pred HHHHHH
Confidence 666655
No 56
>cd04877 ACT_TyrR N-terminal ACT domain of the TyrR protein. ACT_TyrR: N-terminal ACT domain of the TyrR protein. The TyrR protein of Escherichia coli controls the expression of a group of transcription units (TyrR regulon) whose gene products are involved in the biosynthesis or transport of the aromatic amino acids. Binding to specific DNA sequences known as TyrR boxes, the TyrR protein can either activate or repress transcription at different sigma70 promoters. Its regulatory activity occurs in response to intracellular levels of tyrosine, phenylalanine and tryptophan. The TyrR protein consists of an N-terminal region important for transcription activation with an ATP-independent aromatic amino acid binding site (contained within the ACT domain) and is involved in dimerization; a central region with an ATP binding site, an ATP-dependent aromatic amino acid binding site and is involved in hexamerization; and a helix turn helix DNA binding C-terminal region. In solution, in the absence
Probab=92.82 E-value=0.76 Score=37.12 Aligned_cols=45 Identities=7% Similarity=0.047 Sum_probs=37.1
Q ss_pred EEEEEecCCCChHHHHHHHHHhCCceEEEEEEEeeCCEEEEEEEEEcC
Q 046178 449 MIRVQSENVNHPAAKLMSSLRDLDLQLHHASMSCVNDLMLQDIVVRVP 496 (515)
Q Consensus 449 ~I~I~C~~r~glL~~Im~aLeeL~LdV~~a~~S~~~~~vl~~i~vkv~ 496 (515)
.|+|.|.++.|+|.+|+.+|.+.+.++.+.++... +. -.+.+++.
T Consensus 2 ~l~I~~~dr~Gll~dI~~~i~~~~~nI~~~~~~~~-~~--i~l~i~v~ 46 (74)
T cd04877 2 RLEITCEDRLGITQEVLDLLVEHNIDLRGIEIDPK-GR--IYLNFPTI 46 (74)
T ss_pred EEEEEEEccchHHHHHHHHHHHCCCceEEEEEecC-Ce--EEEEeEec
Confidence 48899999999999999999999999999998775 55 22445444
No 57
>cd02116 ACT ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme. Members of this CD belong to the superfamily of ACT regulatory domains. Pairs of ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme. The ACT domain has been detected in a number of diverse proteins; some of these proteins are involved in amino acid and purine biosynthesis, phenylalanine hydroxylation, regulation of bacterial metabolism and transcription, and many remain to be characterized. ACT domain-containing enzymes involved in amino acid and purine synthesis are in many cases allosteric enzymes with complex regulation enforced by the binding of ligands. The ACT domain is commonly involved in the binding of a small regulatory molecule, such as the amino acids L-Ser and L-Phe in the case of D-3-phosphoglycerate dehydrogenase and the bifunctional chorismate mutase-p
Probab=92.75 E-value=0.6 Score=32.86 Aligned_cols=35 Identities=14% Similarity=0.190 Sum_probs=31.5
Q ss_pred EEEEecCCCChHHHHHHHHHhCCceEEEEEEEeeC
Q 046178 450 IRVQSENVNHPAAKLMSSLRDLDLQLHHASMSCVN 484 (515)
Q Consensus 450 I~I~C~~r~glL~~Im~aLeeL~LdV~~a~~S~~~ 484 (515)
|++.|+.++|.+.+|+++|...++++.........
T Consensus 1 i~i~~~~~~~~l~~i~~~l~~~~~~i~~~~~~~~~ 35 (60)
T cd02116 1 LTVSGPDRPGLLAKVLSVLAEAGINITSIEQRTSG 35 (60)
T ss_pred CEEEecCCCchHHHHHHHHHHCCCcEEEEEeEEcC
Confidence 57889999999999999999999999999887654
No 58
>PRK04374 PII uridylyl-transferase; Provisional
Probab=92.43 E-value=0.65 Score=54.88 Aligned_cols=69 Identities=19% Similarity=0.160 Sum_probs=56.0
Q ss_pred CCeEEEEEEecCCCChHHHHHHHHHhCCceEEEEEEEe-eCCEEEEEEEEEcCCCC--CCHHHHHHHHHHHh
Q 046178 445 GSDAMIRVQSENVNHPAAKLMSSLRDLDLQLHHASMSC-VNDLMLQDIVVRVPDGL--RTEDALRSALLRRL 513 (515)
Q Consensus 445 g~e~~I~I~C~~r~glL~~Im~aLeeL~LdV~~a~~S~-~~~~vl~~i~vkv~~~~--~s~e~L~~aL~~~l 513 (515)
.+...|-|.|+.++|+|++|.-+|..+||+|+.|.+.+ .+|.++.+|.|.-+++. -..++|+++|.++|
T Consensus 688 ~~~~~v~v~~~d~~gLFa~i~g~l~~~~lnI~~A~i~t~~~g~~ld~f~V~~~~~~~~~~~~~i~~~l~~~l 759 (869)
T PRK04374 688 NDALEVFVYSPDRDGLFAAIVATLDRKGYGIHRARVLDAPHDAIFDVFEVLPQDTYADGDPQRLAAALRQVL 759 (869)
T ss_pred CCeEEEEEEeCCCccHHHHHHHHHHHCCCeEEEEEEEEcCCCEEEEEEEEeCCCCCChHHHHHHHHHHHHHH
Confidence 34567999999999999999999999999999999986 67899999999866553 12444666666655
No 59
>cd04876 ACT_RelA-SpoT ACT domain found C-terminal of the RelA/SpoT domains. ACT_RelA-SpoT: the ACT domain found C-terminal of the RelA/SpoT domains. Enzymes of the Rel/Spo family enable bacteria to survive prolonged periods of nutrient limitation by controlling guanosine-3'-diphosphate-5'-(tri)diphosphate ((p)ppGpp) production and subsequent rRNA repression (stringent response). Both the synthesis of (p)ppGpp from ATP and GDP(GTP), and its hydrolysis to GDP(GTP) and pyrophosphate, are catalyzed by Rel/Spo proteins. In Escherichia coli and its close relatives, the metabolism of (p)ppGpp is governed by two homologous proteins, RelA and SpoT. The RelA protein catalyzes (p)ppGpp synthesis in a reaction requiring its binding to ribosomes bearing codon-specified uncharged tRNA. The major role of the SpoT protein is the breakdown of (p)ppGpp by a manganese-dependent (p)ppGpp pyrophosphohydrolase activity. Although the stringent response appears to be tightly regulated by these two enzymes i
Probab=92.03 E-value=0.79 Score=34.09 Aligned_cols=48 Identities=15% Similarity=0.211 Sum_probs=38.7
Q ss_pred EEEEecCCCChHHHHHHHHHhCCceEEEEEEEeeC-CEEEEEEEEEcCC
Q 046178 450 IRVQSENVNHPAAKLMSSLRDLDLQLHHASMSCVN-DLMLQDIVVRVPD 497 (515)
Q Consensus 450 I~I~C~~r~glL~~Im~aLeeL~LdV~~a~~S~~~-~~vl~~i~vkv~~ 497 (515)
|+|.|++++|.+.+|++.|.+.++++.+......+ +.....+.+++.+
T Consensus 1 l~v~~~~~~~~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 49 (71)
T cd04876 1 IRVEAIDRPGLLADITTVIAEEKINILSVNTRTDDDGLATIRLTLEVRD 49 (71)
T ss_pred CEEEEeccCcHHHHHHHHHHhCCCCEEEEEeEECCCCEEEEEEEEEECC
Confidence 47889999999999999999999999999887665 4444556666553
No 60
>PRK06027 purU formyltetrahydrofolate deformylase; Reviewed
Probab=91.81 E-value=1 Score=46.34 Aligned_cols=65 Identities=8% Similarity=0.010 Sum_probs=53.6
Q ss_pred eEEEEEEecCCCChHHHHHHHHHhCCceEEEEEEEe--eCCEEEEEEEEEcCCCCCCHHHHHHHHHH
Q 046178 447 DAMIRVQSENVNHPAAKLMSSLRDLDLQLHHASMSC--VNDLMLQDIVVRVPDGLRTEDALRSALLR 511 (515)
Q Consensus 447 e~~I~I~C~~r~glL~~Im~aLeeL~LdV~~a~~S~--~~~~vl~~i~vkv~~~~~s~e~L~~aL~~ 511 (515)
.+.|.+.|++|+|+...|-++|.++|+++...+.++ .++.+.-.+.+.+.....+.++|+++|..
T Consensus 6 ~~vitv~G~DrpGIVa~Vt~~La~~g~NI~d~s~~~~~~~g~F~m~i~v~~~~~~~~~~~L~~~L~~ 72 (286)
T PRK06027 6 RYVLTLSCPDRPGIVAAVSNFLYEHGGNIVDADQFVDPETGRFFMRVEFEGDGLIFNLETLRADFAA 72 (286)
T ss_pred eEEEEEECCCCCcHHHHHHHHHHHCCCCEEEceeEEcCCCCeEEEEEEEEeCCCCCCHHHHHHHHHH
Confidence 467999999999999999999999999999999999 88865556666663334568888888764
No 61
>TIGR00655 PurU formyltetrahydrofolate deformylase. This model describes formyltetrahydrofolate deformylases. The enzyme is a homohexamer. Sequences from a related enzyme formyl tetrahydrofolate-specific enzyme, phosphoribosylglycinamide formyltransferase, serve as an outgroup for phylogenetic analysis. Putative members of this family, scoring below the trusted cutoff, include a sequence from Rhodobacter capsulatus that lacks an otherwise conserved C-terminal region.
Probab=91.66 E-value=1.2 Score=45.96 Aligned_cols=63 Identities=8% Similarity=0.038 Sum_probs=52.9
Q ss_pred EEEEEecCCCChHHHHHHHHHhCCceEEEEEEEeeC--CEEEEEEEEEcCCCCCCHHHHHHHHHH
Q 046178 449 MIRVQSENVNHPAAKLMSSLRDLDLQLHHASMSCVN--DLMLQDIVVRVPDGLRTEDALRSALLR 511 (515)
Q Consensus 449 ~I~I~C~~r~glL~~Im~aLeeL~LdV~~a~~S~~~--~~vl~~i~vkv~~~~~s~e~L~~aL~~ 511 (515)
.|.+.|++++|+.+.|-+.|-+.|++++.++....+ ++++-.+.+.+++...+.++|++++..
T Consensus 2 ~itv~g~D~~GIVA~Vt~~La~~g~NI~d~sq~~~~~~~~F~mr~~v~~~~~~~~~~~l~~~l~~ 66 (280)
T TIGR00655 2 ILLVSCPDQKGLVAAISTFIAKHGANIISNDQHTDPETGRFFMRVEFQLEGFRLEESSLLAAFKS 66 (280)
T ss_pred EEEEECCCCCChHHHHHHHHHHCCCCEEeeeEEEcCCCCeEEEEEEEEeCCCCCCHHHHHHHHHH
Confidence 578999999999999999999999999999988854 666656666666545788899988876
No 62
>PRK08577 hypothetical protein; Provisional
Probab=91.61 E-value=1.6 Score=39.71 Aligned_cols=64 Identities=16% Similarity=0.108 Sum_probs=49.8
Q ss_pred eEEEEEEecCCCChHHHHHHHHHhCCceEEEEEEEeeC--CEEEEEEEEEcCCCCCCHHHHHHHHH
Q 046178 447 DAMIRVQSENVNHPAAKLMSSLRDLDLQLHHASMSCVN--DLMLQDIVVRVPDGLRTEDALRSALL 510 (515)
Q Consensus 447 e~~I~I~C~~r~glL~~Im~aLeeL~LdV~~a~~S~~~--~~vl~~i~vkv~~~~~s~e~L~~aL~ 510 (515)
.+.|+|.+.+++|+|.+|+++|.+.+.++.+.+..+.. +...-.+.+.+.+.....+++.+.|.
T Consensus 56 ~~~I~V~~~Dr~GvLa~I~~~l~~~~inI~~i~~~~~~~~~~~~i~l~vev~~~~~~l~~l~~~L~ 121 (136)
T PRK08577 56 LVEIELVVEDRPGVLAKITGLLAEHGVDILATECEELKRGELAECVIIVDLSKSDIDLEELEEELK 121 (136)
T ss_pred EEEEEEEEcCCCCHHHHHHHHHHHCCCCEEEEEEEEecCCCEEEEEEEEEeCCchhhHHHHHHHHH
Confidence 56799999999999999999999999999988877653 45555677887765334566666654
No 63
>KOG3910 consensus Helix loop helix transcription factor [Transcription]
Probab=91.08 E-value=0.14 Score=55.50 Aligned_cols=57 Identities=25% Similarity=0.298 Sum_probs=47.9
Q ss_pred CCCccchHHHHHHHHHHHHHHHHHhccCCCCCC----CChhhHHHHHHHHHHHHHHHHHHH
Q 046178 339 ETPLNHVEAERQRREKLNHRFYALRAVVPNVSR----MDKASLLSDAVSYIRELKVKIDDL 395 (515)
Q Consensus 339 e~~~~H~~~ER~RR~kln~~f~~LrslvP~~~k----~dKasIL~daI~YIk~Lq~~v~~L 395 (515)
|+|..++..||-|=..||+.|..|-.+.----| -.|.-||-.|+.-|-.|+++|.|-
T Consensus 525 ERR~aNNARERlRVRDINeAfKELGRMCqlHlkSeKpQTKLgILhqAVsVIlsLEQQVRER 585 (632)
T KOG3910|consen 525 ERRMANNARERLRVRDINEAFKELGRMCQLHLKSEKPQTKLGILHQAVSVILSLEQQVRER 585 (632)
T ss_pred HHHhhhhhhhheehhhHHHHHHHHHHHHHHhhcccCcchhhhHHHHHHHHHHHHHHHHHHc
Confidence 467888999999988999999999988753323 357899999999999999999863
No 64
>cd04878 ACT_AHAS N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS). ACT_AHAS: N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS). AHAS catalyses the first common step in the biosynthesis of the three branched-chain amino acids. The first step involves the condensation of either pyruvate or 2-ketobutyrate with the two-carbon hydroxyethyl fragment derived from another pyruvate molecule, covalently bound to the coenzyme thiamine diphosphate. Bacterial AHASs generally consist of regulatory and catalytic subunits. The effector (valine) binding sites are proposed to be located in two symmetrically related positions in the interface between a pair of N-terminal ACT domains with the C-terminal domain of IlvH contacting the catalytic dimer. Plants Arabidopsis and Oryza have tandem IlvH subunits; both the first and second ACT domain sequences are present in this CD. Members of
Probab=90.57 E-value=1.9 Score=33.19 Aligned_cols=48 Identities=13% Similarity=0.090 Sum_probs=39.4
Q ss_pred EEEEEecCCCChHHHHHHHHHhCCceEEEEEEEee--CCEEEEEEEEEcC
Q 046178 449 MIRVQSENVNHPAAKLMSSLRDLDLQLHHASMSCV--NDLMLQDIVVRVP 496 (515)
Q Consensus 449 ~I~I~C~~r~glL~~Im~aLeeL~LdV~~a~~S~~--~~~vl~~i~vkv~ 496 (515)
+|++.+.+++|.+.+|+..|.+.++++.+...... ++.....+.+.+.
T Consensus 2 ~l~i~~~d~~g~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 51 (72)
T cd04878 2 TLSVLVENEPGVLNRISGLFARRGFNIESLTVGPTEDPGISRITIVVEGD 51 (72)
T ss_pred EEEEEEcCCCcHHHHHHHHHHhCCCCEEEEEeeecCCCCeEEEEEEEECC
Confidence 57888999999999999999999999999988764 4555666777653
No 65
>cd04874 ACT_Af1403 N-terminal ACT domain of the yet uncharacterized, small (~133 a.a.), putative amino acid binding protein, Af1403, and related domains. This CD includes the N-terminal ACT domain of the yet uncharacterized, small (~133 a.a.), putative amino acid binding protein, Af1403, from Archaeoglobus fulgidus and other related archeal ACT domains. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=90.16 E-value=2.6 Score=32.47 Aligned_cols=59 Identities=7% Similarity=-0.036 Sum_probs=41.4
Q ss_pred EEEEEecCCCChHHHHHHHHHhCCceEEEEEEEeeC-CEEEEEEEEEcCCCCCCHHHHHHHHH
Q 046178 449 MIRVQSENVNHPAAKLMSSLRDLDLQLHHASMSCVN-DLMLQDIVVRVPDGLRTEDALRSALL 510 (515)
Q Consensus 449 ~I~I~C~~r~glL~~Im~aLeeL~LdV~~a~~S~~~-~~vl~~i~vkv~~~~~s~e~L~~aL~ 510 (515)
.|++.++.++|.+.+|++.|.+.++.+.+......+ +...-. +.+.+. ...+++.++|.
T Consensus 2 ~l~i~~~d~~g~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~--i~~~~~-~~~~~~~~~L~ 61 (72)
T cd04874 2 ALSIIAEDKPGVLRDLTGVIAEHGGNITYTQQFIEREGKARIY--MELEGV-GDIEELVEELR 61 (72)
T ss_pred eEEEEeCCCCChHHHHHHHHHhCCCCEEEEEEeccCCCeEEEE--EEEecc-ccHHHHHHHHh
Confidence 478899999999999999999999999988877653 333323 444432 24445554443
No 66
>cd04879 ACT_3PGDH-like ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH). ACT_3PGDH-like: The ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with or without an extended C-terminal (xct) region found in various bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback controlled by the end product L-serine in an allosteric manner. In the Escherichia coli homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active
Probab=89.90 E-value=1.9 Score=32.94 Aligned_cols=57 Identities=9% Similarity=0.094 Sum_probs=43.0
Q ss_pred EEEEecCCCChHHHHHHHHHhCCceEEEEEEEeeC--CEEEEEEEEEcCCCCCCHHHHHHHHH
Q 046178 450 IRVQSENVNHPAAKLMSSLRDLDLQLHHASMSCVN--DLMLQDIVVRVPDGLRTEDALRSALL 510 (515)
Q Consensus 450 I~I~C~~r~glL~~Im~aLeeL~LdV~~a~~S~~~--~~vl~~i~vkv~~~~~s~e~L~~aL~ 510 (515)
+.|.++.++|.+.+|++.|.+.++++.+..+.... +.....+.+ .+ . ..+++.+.|.
T Consensus 2 l~v~~~d~~g~l~~i~~~l~~~~~nI~~~~~~~~~~~~~~~~~~~v--~~-~-~~~~l~~~l~ 60 (71)
T cd04879 2 LLIVHKDVPGVIGKVGTILGEHGINIAAMQVGRKEKGGIAYMVLDV--DS-P-VPEEVLEELK 60 (71)
T ss_pred EEEEecCCCCHHHHHHHHHHhcCCCeeeEEEeccCCCCEEEEEEEc--CC-C-CCHHHHHHHH
Confidence 67889999999999999999999999999987754 555555555 33 2 3456665554
No 67
>cd04909 ACT_PDH-BS C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH). The C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback-inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=89.78 E-value=1.7 Score=34.21 Aligned_cols=60 Identities=10% Similarity=0.118 Sum_probs=42.3
Q ss_pred EEEEEecCCCChHHHHHHHHHhCCceEEEEEEEeeC-C-EEEEEEEEEcCCCCCCHHHHHHHHHH
Q 046178 449 MIRVQSENVNHPAAKLMSSLRDLDLQLHHASMSCVN-D-LMLQDIVVRVPDGLRTEDALRSALLR 511 (515)
Q Consensus 449 ~I~I~C~~r~glL~~Im~aLeeL~LdV~~a~~S~~~-~-~vl~~i~vkv~~~~~s~e~L~~aL~~ 511 (515)
-+++.+++++|.|.+|++.|.+.++++......... + .-...+.+++++ ..+++++.|.+
T Consensus 3 ~~~v~~~d~~G~L~~l~~~l~~~~i~i~~~~~~~~~~~~~~~~~i~v~~~~---~~~~~~~~L~~ 64 (69)
T cd04909 3 DLYVDVPDEPGVIAEVTQILGDAGISIKNIEILEIREGIGGILRISFKTQE---DRERAKEILKE 64 (69)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCCceeeEeEEeecCCcEEEEEEECCHH---HHHHHHHHHHH
Confidence 477899999999999999999999999988766542 2 222245554332 45566666654
No 68
>cd04905 ACT_CM-PDT C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme. The C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme, found in plants, fungi, bacteria, and archaea. The P-protein of E. coli (CM-PDT, PheA) catalyzes the conversion of chorismate to prephenate and then the decarboxylation and dehydration to form phenylpyruvate. These are the first two steps in the biosynthesis of L-Phe and L-Tyr via the shikimate pathway in microorganisms and plants. The E. coli P-protein (CM-PDT) has three domains with an N-terminal domain with chorismate mutase activity, a middle domain with prephenate dehydratase activity, and an ACT regulatory C-terminal domain. The prephenate dehydratase enzyme has a PDT and ACT domain. The ACT domain is essential to bring about the negative allosteric regulation by L-Phe bindi
Probab=89.73 E-value=2.8 Score=34.26 Aligned_cols=61 Identities=10% Similarity=0.034 Sum_probs=45.4
Q ss_pred EEEEEecCCCChHHHHHHHHHhCCceEEEEEEEeeCC-EEEEEEEEEcCCCCCCHHHHHHHHH
Q 046178 449 MIRVQSENVNHPAAKLMSSLRDLDLQLHHASMSCVND-LMLQDIVVRVPDGLRTEDALRSALL 510 (515)
Q Consensus 449 ~I~I~C~~r~glL~~Im~aLeeL~LdV~~a~~S~~~~-~vl~~i~vkv~~~~~s~e~L~~aL~ 510 (515)
.|.+.-+.++|.|.+|++.|.+.++.+++..+....+ ...+.|.+..... .+.++++.+|.
T Consensus 3 sl~~~~~d~~G~L~~il~~f~~~~ini~~i~s~p~~~~~~~~~f~vd~~~~-~~~~~~~~~l~ 64 (80)
T cd04905 3 SIVFTLPNKPGALYDVLGVFAERGINLTKIESRPSKGGLWEYVFFIDFEGH-IEDPNVAEALE 64 (80)
T ss_pred EEEEEECCCCCHHHHHHHHHHHCCcCEEEEEEEEcCCCCceEEEEEEEECC-CCCHHHHHHHH
Confidence 4556667899999999999999999999997766543 5567778877643 44556665553
No 69
>KOG3560 consensus Aryl-hydrocarbon receptor [Transcription]
Probab=89.70 E-value=0.32 Score=53.55 Aligned_cols=39 Identities=36% Similarity=0.657 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHHHhccCCC----CCCCChhhHHHHHHHHHH
Q 046178 348 ERQRREKLNHRFYALRAVVPN----VSRMDKASLLSDAVSYIR 386 (515)
Q Consensus 348 ER~RR~kln~~f~~LrslvP~----~~k~dKasIL~daI~YIk 386 (515)
-+|-|++||.-+..|.+|+|. ++|.||.|||.-++.|++
T Consensus 33 SKRHRdRLNaELD~lAsLLPfpqdiisKLDkLSVLRLSVSyLr 75 (712)
T KOG3560|consen 33 SKRHRDRLNAELDHLASLLPFPQDIISKLDKLSVLRLSVSYLR 75 (712)
T ss_pred chhHHHHhhhHHHHHHHhcCCCHHHHhhhhhhhhhhhhHHHHH
Confidence 456688999999999999995 699999999999999986
No 70
>cd04903 ACT_LSD C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit. The C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit, found in various bacterial anaerobes such as Clostridium, Bacillis, and Treponema species. These enzymes catalyze the deamination of L-serine, producing pyruvate and ammonia. Unlike the eukaryotic L-serine dehydratase, which requires the pyridoxal-5'-phosphate (PLP) cofactor, the prokaryotic L-serine dehydratase contains an [4Fe-4S] cluster instead of a PLP active site. The LSD alpha and beta subunits of the 'clostridial' enzyme are encoded by the sdhA and sdhB genes. The single subunit bacterial homologs of L-serine dehydratase (LSD1, LSD2, TdcG) present in Escherichia coli, and other enterobacterials, lack the ACT domain described here. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=89.70 E-value=1.9 Score=33.11 Aligned_cols=58 Identities=17% Similarity=0.204 Sum_probs=40.7
Q ss_pred EEEEEecCCCChHHHHHHHHHhCCceEEEEEEEee--CCEEEEEEEEEcCCCCCCHHHHHHHHH
Q 046178 449 MIRVQSENVNHPAAKLMSSLRDLDLQLHHASMSCV--NDLMLQDIVVRVPDGLRTEDALRSALL 510 (515)
Q Consensus 449 ~I~I~C~~r~glL~~Im~aLeeL~LdV~~a~~S~~--~~~vl~~i~vkv~~~~~s~e~L~~aL~ 510 (515)
+|.+.+++++|.+.+|...|.+.++++.+...... ++..... +.+.+. ..+++.++|.
T Consensus 1 ~l~i~~~d~~g~l~~i~~~l~~~~~~I~~~~~~~~~~~~~~~i~--i~v~~~--~~~~~i~~l~ 60 (71)
T cd04903 1 TLIVVHKDKPGAIAKVTSVLADHEINIAFMRVSRKEKGDQALMV--IEVDQP--IDEEVIEEIK 60 (71)
T ss_pred CEEEEeCCCCChHHHHHHHHHHcCcCeeeeEEEeccCCCeEEEE--EEeCCC--CCHHHHHHHH
Confidence 36789999999999999999999999998877653 2333323 444443 4445555544
No 71
>cd04881 ACT_HSDH-Hom ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) and related domains. The ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) encoded by the hom gene of Bacillus subtilis and other related sequences. HSDH reduces aspartate semi-aldehyde to the amino acid homoserine, one that is required for the biosynthesis of Met, Thr, and Ile from Asp. Neither the enzyme nor the aspartate pathway is found in the animal kingdom. This mostly bacterial HSDH group has a C-terminal ACT domain and is believed to be involved in enzyme regulation. A C-terminal deletion in the Corynebacterium glutamicum HSDH abolished allosteric inhibition by L-threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=89.69 E-value=2.8 Score=32.77 Aligned_cols=46 Identities=13% Similarity=0.146 Sum_probs=36.6
Q ss_pred EEEEEecCCCChHHHHHHHHHhCCceEEEEEEEeeC--CEEEEEEEEE
Q 046178 449 MIRVQSENVNHPAAKLMSSLRDLDLQLHHASMSCVN--DLMLQDIVVR 494 (515)
Q Consensus 449 ~I~I~C~~r~glL~~Im~aLeeL~LdV~~a~~S~~~--~~vl~~i~vk 494 (515)
+|+|.+.+++|.+.+|+..|.+.+.++.+....... +...-.+.+.
T Consensus 2 yl~i~~~d~~g~l~~i~~~l~~~~i~I~~~~~~~~~~~~~~~~~i~~~ 49 (79)
T cd04881 2 YLRLTVKDKPGVLAKITGILAEHGISIESVIQKEADGGETAPVVIVTH 49 (79)
T ss_pred EEEEEeCCCCcHHHHHHHHHHHcCCCeEEEEEcccCCCCceeEEEEEc
Confidence 689999999999999999999999999998876543 4333334444
No 72
>cd04883 ACT_AcuB C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. This CD includes the C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. AcuB is putatively involved in the anaerobic catabolism of acetoin, and related proteins. Studies report the induction of AcuB by nitrate respiration and also by fermentation. Since acetoin can be secreted and later serve as a source of carbon, it has been proposed that, during anaerobic growth when other carbon sources are exhausted, the induction of the AcuB protein results in acetoin catabolism. AcuB-like proteins have two N-terminal tandem CBS domains and a single C-terminal ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=89.49 E-value=2.7 Score=33.06 Aligned_cols=60 Identities=13% Similarity=0.116 Sum_probs=43.2
Q ss_pred EEEEEEecCCCChHHHHHHHHHhCCceEEEEEEEee--CCEEEEEEEEEcCCCCCCHHHHHHHHHH
Q 046178 448 AMIRVQSENVNHPAAKLMSSLRDLDLQLHHASMSCV--NDLMLQDIVVRVPDGLRTEDALRSALLR 511 (515)
Q Consensus 448 ~~I~I~C~~r~glL~~Im~aLeeL~LdV~~a~~S~~--~~~vl~~i~vkv~~~~~s~e~L~~aL~~ 511 (515)
..|.+..++++|.|.+|++.|.+.++.+.+...... .+.....|++... +.++++++|..
T Consensus 2 ~~~~v~~~d~pG~l~~i~~~l~~~~inI~~i~~~~~~~~~~~~v~i~v~~~----~~~~~~~~L~~ 63 (72)
T cd04883 2 SQIEVRVPDRPGQLADIAAIFKDRGVNIVSVLVYPSKEEDNKILVFRVQTM----NPRPIIEDLRR 63 (72)
T ss_pred cEEEEEECCCCCHHHHHHHHHHHcCCCEEEEEEeccCCCCeEEEEEEEecC----CHHHHHHHHHH
Confidence 357788999999999999999999999998865443 2344445555442 24577777654
No 73
>PRK13011 formyltetrahydrofolate deformylase; Reviewed
Probab=88.96 E-value=2.2 Score=43.97 Aligned_cols=65 Identities=12% Similarity=0.083 Sum_probs=49.8
Q ss_pred eEEEEEEecCCCChHHHHHHHHHhCCceEEEEEEEeeCC--EEEEEEEEEcCCCCCCHHHHHHHHHHH
Q 046178 447 DAMIRVQSENVNHPAAKLMSSLRDLDLQLHHASMSCVND--LMLQDIVVRVPDGLRTEDALRSALLRR 512 (515)
Q Consensus 447 e~~I~I~C~~r~glL~~Im~aLeeL~LdV~~a~~S~~~~--~vl~~i~vkv~~~~~s~e~L~~aL~~~ 512 (515)
.+.|.|.|++++|+..+|-+.|-++++++...+..+... .+.-.+.+..+.+ .+.++|+.+|...
T Consensus 7 ~~vitv~G~DrpGIVa~VT~~La~~~vNI~dls~~~~~~~~~F~m~~~~~~p~~-~~~~~L~~~L~~l 73 (286)
T PRK13011 7 TFVLTLSCPSAAGIVAAVTGFLAEHGCYITELHSFDDRLSGRFFMRVEFHSEEG-LDEDALRAGFAPI 73 (286)
T ss_pred eEEEEEEeCCCCCHHHHHHHHHHhCCCCEEEeeeeecCCCCeEEEEEEEecCCC-CCHHHHHHHHHHH
Confidence 467999999999999999999999999999999874333 3333344444544 5788999887653
No 74
>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains. Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.
Probab=88.81 E-value=3 Score=32.75 Aligned_cols=57 Identities=19% Similarity=0.211 Sum_probs=43.3
Q ss_pred EEEEEecCCCChHHHHHHHHHhCCceEEEEEEEeeCCEEEEEEEEEcCCCCCCHHHHHHHHHH
Q 046178 449 MIRVQSENVNHPAAKLMSSLRDLDLQLHHASMSCVNDLMLQDIVVRVPDGLRTEDALRSALLR 511 (515)
Q Consensus 449 ~I~I~C~~r~glL~~Im~aLeeL~LdV~~a~~S~~~~~vl~~i~vkv~~~~~s~e~L~~aL~~ 511 (515)
.|.|..++++|.|.+|+++|.+.|++|.+.-+....+. -.+++...+ .+.+.+.|.+
T Consensus 3 ri~v~v~d~pG~La~v~~~l~~~~inI~~i~~~~~~~~--~~~rl~~~~----~~~~~~~L~~ 59 (66)
T cd04908 3 QLSVFLENKPGRLAAVTEILSEAGINIRALSIADTSEF--GILRLIVSD----PDKAKEALKE 59 (66)
T ss_pred EEEEEEcCCCChHHHHHHHHHHCCCCEEEEEEEecCCC--CEEEEEECC----HHHHHHHHHH
Confidence 36778899999999999999999999999887776663 455555532 4566666654
No 75
>cd04882 ACT_Bt0572_2 C-terminal ACT domain of a novel protein composed of just two ACT domains. Included in this CD is the C-terminal ACT domain of a novel protein composed of just two ACT domains, as seen in the yet uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related proteins. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=88.62 E-value=2 Score=32.86 Aligned_cols=56 Identities=11% Similarity=0.133 Sum_probs=40.6
Q ss_pred EEEEecCCCChHHHHHHHHHhCCceEEEEEEEeeC--CEEEEEEEEEcCCCCCCHHHHHHHHHH
Q 046178 450 IRVQSENVNHPAAKLMSSLRDLDLQLHHASMSCVN--DLMLQDIVVRVPDGLRTEDALRSALLR 511 (515)
Q Consensus 450 I~I~C~~r~glL~~Im~aLeeL~LdV~~a~~S~~~--~~vl~~i~vkv~~~~~s~e~L~~aL~~ 511 (515)
|.|.=+.++|.|.+|++.|.+.+++|.+....... +... +.+.++. .+++++.|.+
T Consensus 2 i~v~~~d~pG~L~~i~~~l~~~~~nI~~i~~~~~~~~~~~~--v~~~ve~----~~~~~~~L~~ 59 (65)
T cd04882 2 LAVEVPDKPGGLHEILQILSEEGINIEYMYAFVEKKGGKAL--LIFRTED----IEKAIEVLQE 59 (65)
T ss_pred EEEEeCCCCcHHHHHHHHHHHCCCChhheEEEccCCCCeEE--EEEEeCC----HHHHHHHHHH
Confidence 56777899999999999999999999877765543 3333 3444443 5677776654
No 76
>KOG3559 consensus Transcriptional regulator SIM1 [Transcription]
Probab=88.17 E-value=0.44 Score=50.76 Aligned_cols=42 Identities=43% Similarity=0.666 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHHHHHHhccCCC----CCCCChhhHHHHHHHHHHH
Q 046178 346 EAERQRREKLNHRFYALRAVVPN----VSRMDKASLLSDAVSYIRE 387 (515)
Q Consensus 346 ~~ER~RR~kln~~f~~LrslvP~----~~k~dKasIL~daI~YIk~ 387 (515)
-+-|.||+|-|--|+.|..++|- .+..||++|+.-|..|||.
T Consensus 7 naA~tRRekEN~EF~eLAklLPLa~AItsQlDKasiiRLtTsYlKm 52 (598)
T KOG3559|consen 7 NAARTRREKENYEFYELAKLLPLASAITSQLDKASIIRLTTSYLKM 52 (598)
T ss_pred hHHHHHHHhhcchHHHHHhhccchhhhhhccchhhhhhHHHHHHHH
Confidence 36799999999999999999994 3668999999999999983
No 77
>KOG3558 consensus Hypoxia-inducible factor 1/Neuronal PAS domain protein NPAS1 [Signal transduction mechanisms; Transcription]
Probab=87.95 E-value=0.36 Score=54.57 Aligned_cols=41 Identities=44% Similarity=0.734 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHHHHHhccCCC----CCCCChhhHHHHHHHHHH
Q 046178 346 EAERQRREKLNHRFYALRAVVPN----VSRMDKASLLSDAVSYIR 386 (515)
Q Consensus 346 ~~ER~RR~kln~~f~~LrslvP~----~~k~dKasIL~daI~YIk 386 (515)
-|-|-||.|=|+-|+.|..+||- .+..|||||+.-||.|++
T Consensus 52 dAARsRRsKEn~~FyeLa~~lPlp~aisshLDkaSimRLtISyLR 96 (768)
T KOG3558|consen 52 DAARSRRSKENEEFYELAKLLPLPAAISSHLDKASIMRLTISYLR 96 (768)
T ss_pred hhhhhhcccchHHHHHHHHhCCCcchhhhhhhhHHHHHHHHHHHH
Confidence 47899999999999999999994 377899999999999997
No 78
>PRK13010 purU formyltetrahydrofolate deformylase; Reviewed
Probab=87.35 E-value=2.6 Score=43.56 Aligned_cols=65 Identities=6% Similarity=0.034 Sum_probs=47.1
Q ss_pred eEEEEEEecCCCChHHHHHHHHHhCCceEEEEEEE--eeCCEEEEEEEEEc-CCCCCCHHHHHHHHHH
Q 046178 447 DAMIRVQSENVNHPAAKLMSSLRDLDLQLHHASMS--CVNDLMLQDIVVRV-PDGLRTEDALRSALLR 511 (515)
Q Consensus 447 e~~I~I~C~~r~glL~~Im~aLeeL~LdV~~a~~S--~~~~~vl~~i~vkv-~~~~~s~e~L~~aL~~ 511 (515)
.+.|.|.|++++|+.++|-+.|-+.|++++.++-. +..+.++--+.+.. ....++.++|+++|..
T Consensus 9 ~~iitv~G~Dr~GIVA~Vs~~Lae~g~NI~disq~~d~~~~~ffm~i~~~~~~~~~~~~~~l~~~l~~ 76 (289)
T PRK13010 9 SYVLTLACPSAPGIVAAVSGFLAEKGCYIVELTQFDDDESGRFFMRVSFHAQSAEAASVDTFRQEFQP 76 (289)
T ss_pred CEEEEEECCCCCCcHHHHHHHHHHCCCCEEecccccccccCcEEEEEEEEcCCCCCCCHHHHHHHHHH
Confidence 46799999999999999999999999999999885 22232222222221 1234678889888765
No 79
>cd04880 ACT_AAAH-PDT-like ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH). ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. Eukaryotic AAAHs have an N-terminal ACT (regulatory) domain, a middle catalytic domain and a C-terminal domain which is responsible for the oligomeric state of the enzyme forming a domain-swapped tetrameric coiled-coil. The PAH, TH, and TPH enzymes contain highly conserved catalytic domains but distinct N-terminal ACT domains and differ in their mech
Probab=86.88 E-value=4.1 Score=32.73 Aligned_cols=47 Identities=13% Similarity=0.087 Sum_probs=37.7
Q ss_pred EEEecCCCChHHHHHHHHHhCCceEEEEEEEeeCC-EEEEEEEEEcCC
Q 046178 451 RVQSENVNHPAAKLMSSLRDLDLQLHHASMSCVND-LMLQDIVVRVPD 497 (515)
Q Consensus 451 ~I~C~~r~glL~~Im~aLeeL~LdV~~a~~S~~~~-~vl~~i~vkv~~ 497 (515)
-+..++++|.|.+|++.|.+.|+.+.+..+....+ .--+.|.+.+..
T Consensus 3 ~~~l~d~pG~L~~vL~~f~~~~vni~~I~Srp~~~~~~~~~f~id~~~ 50 (75)
T cd04880 3 VFSLKNKPGALAKALKVFAERGINLTKIESRPSRKGLWEYEFFVDFEG 50 (75)
T ss_pred EEEeCCcCCHHHHHHHHHHHCCCCEEEEEeeecCCCCceEEEEEEEEC
Confidence 34557899999999999999999999998877665 455667777654
No 80
>KOG3898 consensus Transcription factor NeuroD and related HTH proteins [Transcription]
Probab=86.18 E-value=0.43 Score=48.45 Aligned_cols=51 Identities=33% Similarity=0.445 Sum_probs=44.4
Q ss_pred CCccchHHHHHHHHHHHHHHHHHhccCCC---CCCCChhhHHHHHHHHHHHHHH
Q 046178 340 TPLNHVEAERQRREKLNHRFYALRAVVPN---VSRMDKASLLSDAVSYIRELKV 390 (515)
Q Consensus 340 ~~~~H~~~ER~RR~kln~~f~~LrslvP~---~~k~dKasIL~daI~YIk~Lq~ 390 (515)
.+.+-+..||+|--.||+.|..||.++|. ..|+.|.-.|.-|-+||..|++
T Consensus 72 rR~kaNaRER~RMH~LNdAld~LReviP~~~~~~klskIetl~~a~~yi~als~ 125 (254)
T KOG3898|consen 72 RRLKANARERTRMHDLNDALDALREVIPHGLHPPKLSKIETLRLAANYIAALSE 125 (254)
T ss_pred hcccccchhhccccchhHHHHHhHhhccCcCCCCCCCcchhHHhhhcchhhhcc
Confidence 45667788999999999999999999994 5788898899999999987764
No 81
>cd04884 ACT_CBS C-terminal ACT domain of the cystathionine beta-synthase (CBS) domain protein found in Thermotoga maritima, Tm0935, and delta proteobacteria. This CD includes the C-terminal ACT domain of the cystathionine beta-synthase (CBS) domain protein found in Thermotoga maritima, Tm0935, and delta proteobacteria. This protein has two N-terminal tandem CBS domains and a single C-terminal ACT domain. The CBS domain is found in a wide range of proteins, often in tandem arrangements and together with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=85.79 E-value=4.5 Score=32.19 Aligned_cols=61 Identities=15% Similarity=0.117 Sum_probs=41.6
Q ss_pred EEEEecCCCChHHHHHHHHHhCCceEEEEEEEee---CCEEEEEEEEEcCCCCCCHHHHHHHHHH
Q 046178 450 IRVQSENVNHPAAKLMSSLRDLDLQLHHASMSCV---NDLMLQDIVVRVPDGLRTEDALRSALLR 511 (515)
Q Consensus 450 I~I~C~~r~glL~~Im~aLeeL~LdV~~a~~S~~---~~~vl~~i~vkv~~~~~s~e~L~~aL~~ 511 (515)
+.+.=+.++|.|.+|++.|.+.|.++++...... .+.-...+++.++. .-..++|.++|.+
T Consensus 2 l~v~~~d~pG~L~~l~~~i~~~g~nI~~i~~~~~~~~~~~~~~~v~v~~e~-~~~~~~i~~~L~~ 65 (72)
T cd04884 2 FTFLLEDKPGTLKPVVDTLREFNARIISILTAFEDAPDGMRRVFIRVTPMD-RSKENELIEELKA 65 (72)
T ss_pred EEEEecCCCccHHHHHHHHHHCCCeEEEEEeccccCCCCccEEEEEEEEec-chHHHHHHHHHhC
Confidence 4567789999999999999999999999877665 23334445554422 1124566666643
No 82
>PRK07334 threonine dehydratase; Provisional
Probab=85.53 E-value=3.7 Score=44.12 Aligned_cols=52 Identities=13% Similarity=0.135 Sum_probs=44.5
Q ss_pred CeEEEEEEecCCCChHHHHHHHHHhCCceEEEEEEEee-----CCEEEEEEEEEcCC
Q 046178 446 SDAMIRVQSENVNHPAAKLMSSLRDLDLQLHHASMSCV-----NDLMLQDIVVRVPD 497 (515)
Q Consensus 446 ~e~~I~I~C~~r~glL~~Im~aLeeL~LdV~~a~~S~~-----~~~vl~~i~vkv~~ 497 (515)
-.+.|+|.+.+|+|+|.+|+.+|.+.+++|.++++... ++...-.|+++|.+
T Consensus 325 y~v~l~I~~~dr~GlL~dI~~~is~~~~nI~~v~~~~~~~~~~~~~~~i~l~i~V~d 381 (403)
T PRK07334 325 RLARLRVDIRDRPGALARVTALIGEAGANIIEVSHQRLFTDLPAKGAELELVIETRD 381 (403)
T ss_pred CEEEEEEEeCCCCCHHHHHHHHHhhCCCceEEEEEEecccCCCCCeEEEEEEEEeCC
Confidence 34889999999999999999999999999999998764 46666677887764
No 83
>PF13185 GAF_2: GAF domain; PDB: 2QYB_A 3KSG_B 3KSF_C 3KSI_A 3KSH_A 3MMH_A 3RFB_B 1F5M_A 3KO6_B 3HCY_A ....
Probab=84.72 E-value=0.75 Score=40.32 Aligned_cols=65 Identities=18% Similarity=0.195 Sum_probs=39.3
Q ss_pred CccceEeeCCCeeeeeCCCCcCcCcchhHHHHhhcCCceEEEEec--CC---ceEeeccccccccChhHHHHHH
Q 046178 145 GIPGRAQSSGSLVWLTGSHELQFYNCERAKEAQSHGIETFVCIPT--SC---GVLELGSSDLIRENWGLVHQVK 213 (515)
Q Consensus 145 GlpG~a~~sg~~~Wl~~~~~~~~~~~~r~~~a~~~giqTivciP~--~~---GVvELGSt~~v~E~~~lv~~ik 213 (515)
|+.+.++.+++++|+. .+...+.....+...|++.++|||+ .+ |||.|++.+.-.=+..-+..+.
T Consensus 68 ~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~s~l~vPl~~~~~~~Gvl~l~~~~~~~f~~~~~~~l~ 137 (148)
T PF13185_consen 68 GLWEGVLRTGEPIIIN----DDDSSFPPWELARHPGIRSILCVPLRSGGEVIGVLSLYSKEPNAFSEEDLELLE 137 (148)
T ss_dssp ETTSHHHHHTS-EEES----CCCGGGSTTHHHCCTT-SEEEEEEEEETTEEEEEEEEEESSTT---HHHHHHHH
T ss_pred hHHHHHHhcCceEEEe----CccccccchhhhccccCCEEEEEEEeECCEEEEEEEEeeCCCCCcCHHHHHHHH
Confidence 4455558999999999 1111222234556689999999998 33 8999999776444444443333
No 84
>cd04889 ACT_PDH-BS-like C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate. Included in this CD is the C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Also included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem A
Probab=84.51 E-value=4 Score=30.76 Aligned_cols=46 Identities=13% Similarity=0.185 Sum_probs=37.5
Q ss_pred EEEEecCCCChHHHHHHHHHhCCceEEEEEEEeeC-CEEEEEEEEEc
Q 046178 450 IRVQSENVNHPAAKLMSSLRDLDLQLHHASMSCVN-DLMLQDIVVRV 495 (515)
Q Consensus 450 I~I~C~~r~glL~~Im~aLeeL~LdV~~a~~S~~~-~~vl~~i~vkv 495 (515)
|.+..+.++|.|.+|.++|.+.++++.+..+...+ +.-+..+.+..
T Consensus 1 ~~v~~~d~~G~l~~i~~~l~~~~inI~~~~~~~~~~~~~~~~~~v~~ 47 (56)
T cd04889 1 LSVFVENKPGRLAEVTEILAEAGINIKAISIAETRGEFGILRLIFSD 47 (56)
T ss_pred CEEEeCCCCChHHHHHHHHHHcCCCEeeEEEEEccCCcEEEEEEECC
Confidence 46788999999999999999999999998887765 55555565544
No 85
>COG2844 GlnD UTP:GlnB (protein PII) uridylyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=84.32 E-value=3.6 Score=47.85 Aligned_cols=70 Identities=19% Similarity=0.197 Sum_probs=55.4
Q ss_pred EEEEeCCeEEEEEEecCCCChHHHHHHHHHhCCceEEEEEEEe-eCCEEEEEEEEEcCCC-CCCHHHHHHHHH
Q 046178 440 ETKIMGSDAMIRVQSENVNHPAAKLMSSLRDLDLQLHHASMSC-VNDLMLQDIVVRVPDG-LRTEDALRSALL 510 (515)
Q Consensus 440 eV~i~g~e~~I~I~C~~r~glL~~Im~aLeeL~LdV~~a~~S~-~~~~vl~~i~vkv~~~-~~s~e~L~~aL~ 510 (515)
.++...+..-|-|.|+.++.+++.|.-++...|++|+.|++-+ .+|..+.+|.|.-+++ .+. ++.+.++.
T Consensus 677 ~~r~~~~~teV~V~a~d~p~Lfa~v~~~~~~~g~~i~dAqi~tt~dG~alDtfiv~~~~g~~~~-~dr~~~~~ 748 (867)
T COG2844 677 SVRPHSGGTEVFVYAPDRPRLFAVVCAALSRRGLSIVDAQIFTTRDGYALDTFIVLEPDGFPVE-EDRRAALR 748 (867)
T ss_pred eecccCCceEEEEEcCCCccHHHHHHHHHccCCCceeeeEEEEccCCceeeeEEEecCCCCccc-hhHHHHHH
Confidence 4444566788999999999999999999999999999999965 6678999999887666 344 44444433
No 86
>PRK11589 gcvR glycine cleavage system transcriptional repressor; Provisional
Probab=82.86 E-value=22 Score=34.55 Aligned_cols=63 Identities=8% Similarity=0.141 Sum_probs=50.9
Q ss_pred EEEEEEecCCCChHHHHHHHHHhCCceEEEEEEEeeCC------EEEEEEEEEcCCCCCCHHHHHHHHHH
Q 046178 448 AMIRVQSENVNHPAAKLMSSLRDLDLQLHHASMSCVND------LMLQDIVVRVPDGLRTEDALRSALLR 511 (515)
Q Consensus 448 ~~I~I~C~~r~glL~~Im~aLeeL~LdV~~a~~S~~~~------~vl~~i~vkv~~~~~s~e~L~~aL~~ 511 (515)
..|.|.-++++|++.+|-++|-+.+++|.+.+.-+... .+.-.+.+.++.+. ..++|+.+|..
T Consensus 96 ~~v~v~G~DrPGIV~~vT~~la~~~iNI~~L~T~~~~a~~~~~~lf~~~~~v~lP~~~-~~~~L~~~l~~ 164 (190)
T PRK11589 96 VWVQVEVADSPHLIERFTALFDSHHMNIAELVSRTQPAEGERPAQLHIQITAHSPASQ-DAANIEQAFKA 164 (190)
T ss_pred EEEEEEECCCCCHHHHHHHHHHHcCCChhheEEeeecCCCCCcccEEEEEEEEcCCCC-CHHHHHHHHHH
Confidence 56888999999999999999999999999988877653 45556777777664 57788887764
No 87
>KOG4395 consensus Transcription factor Atonal, contains HTH domain [Transcription]
Probab=80.61 E-value=2.3 Score=42.91 Aligned_cols=53 Identities=34% Similarity=0.408 Sum_probs=43.5
Q ss_pred CCccchHHHHHHHHHHHHHHHHHhccCCCC---CCCChhhHHHHHHHHHHHHHHHH
Q 046178 340 TPLNHVEAERQRREKLNHRFYALRAVVPNV---SRMDKASLLSDAVSYIRELKVKI 392 (515)
Q Consensus 340 ~~~~H~~~ER~RR~kln~~f~~LrslvP~~---~k~dKasIL~daI~YIk~Lq~~v 392 (515)
.+..-+..||+|-..||..|..||-+||.. .|.+|---|.-|-.||--|-..+
T Consensus 174 rr~aanarErrrm~gLN~AfD~Lr~v~p~~~~d~~LSkyetLqmaq~yi~~l~~~l 229 (285)
T KOG4395|consen 174 RRLAANARERRRMNGLNSAFDRLRLVVPDGDSDKKLSKYETLQMAQGYILALGCLL 229 (285)
T ss_pred hhcccchHHHHHhhhHHHHHHHHHHhcCCCCccchhhhhhHHHHHHHHHhhhHHhh
Confidence 445567889999999999999999999964 67778888999999998665443
No 88
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=79.51 E-value=1.6 Score=48.65 Aligned_cols=77 Identities=18% Similarity=0.280 Sum_probs=53.5
Q ss_pred eeCCCCCccceEeeCCCeeeeeCCCCcCcCcchhHHHHhhcCCceEEEEec-----CCceEeeccccc----cccChhHH
Q 046178 139 SFGAGVGIPGRAQSSGSLVWLTGSHELQFYNCERAKEAQSHGIETFVCIPT-----SCGVLELGSSDL----IRENWGLV 209 (515)
Q Consensus 139 sf~~g~GlpG~a~~sg~~~Wl~~~~~~~~~~~~r~~~a~~~giqTivciP~-----~~GVvELGSt~~----v~E~~~lv 209 (515)
.|..|+|+.|+|+.+++|+++.+...-+. |....-....|+++++|||+ .-|||.+.+... -.+|.+++
T Consensus 68 ~~~~~~gi~g~v~~~~~pvii~Dv~~d~~--~~~~~~~~~~~~~S~l~VPL~~~g~viGvL~v~s~~~~~~ft~~d~~lL 145 (534)
T TIGR01817 68 RYRVGEGAIGQIVATGNSLVVPDVAAEPL--FLDRLSLYDPGPVPFIGVPIKADSETIGVLAADRDFRSRERLEEEVRFL 145 (534)
T ss_pred cccCCccHHHHHHhcCCeEEecccccCch--hhhccccccCCcceEEEEEEcCCCEEEEEEEEEeccccccccHHHHHHH
Confidence 46789999999999999999998654221 11111123468899999998 347999998753 34566676
Q ss_pred HHHHHHhc
Q 046178 210 HQVKSLFG 217 (515)
Q Consensus 210 ~~ik~~F~ 217 (515)
..+-....
T Consensus 146 ~~lA~~ia 153 (534)
T TIGR01817 146 EMVANLIG 153 (534)
T ss_pred HHHHHHHH
Confidence 66655543
No 89
>cd04931 ACT_PAH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH). ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH). PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe. In PAH, an autoregulatory sequence, N-terminal of the ACT domain, extends across the catalytic domain active site and regulates the enzyme by intrasteric regulation. It appears that the activation by L-Phe induces a conformational change that converts the enzyme to a high-affinity and high-activity state. Modulation of activity is achieved through inhibition by BH4 and activation by phosphorylation of serine residues of the autoregulatory region. The molecular basis for the cooperative activation process is not fully understood yet. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=77.82 E-value=15 Score=31.41 Aligned_cols=60 Identities=12% Similarity=0.104 Sum_probs=44.7
Q ss_pred EEEEEEecCCCChHHHHHHHHHhCCceEEEEEEEeeCC-EEEEEEEEEcCCCCCCHHHHHHHH
Q 046178 448 AMIRVQSENVNHPAAKLMSSLRDLDLQLHHASMSCVND-LMLQDIVVRVPDGLRTEDALRSAL 509 (515)
Q Consensus 448 ~~I~I~C~~r~glL~~Im~aLeeL~LdV~~a~~S~~~~-~vl~~i~vkv~~~~~s~e~L~~aL 509 (515)
..|-+..++++|.|.+++..|...|+.+.+..+-...+ ..-|.|.+.+... ..+.++++|
T Consensus 15 tslif~l~~~pGsL~~vL~~Fa~~~INLt~IeSRP~~~~~~~Y~FfVDieg~--~~~~~~~~l 75 (90)
T cd04931 15 ISLIFSLKEEVGALAKVLRLFEEKDINLTHIESRPSRLNKDEYEFFINLDKK--SAPALDPII 75 (90)
T ss_pred EEEEEEcCCCCcHHHHHHHHHHHCCCCEEEEEeccCCCCCceEEEEEEEEcC--CCHHHHHHH
Confidence 45566668899999999999999999999998887654 3456777777543 234555555
No 90
>cd04904 ACT_AAAH ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH). ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe; TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines; and TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxy
Probab=77.73 E-value=12 Score=30.41 Aligned_cols=57 Identities=9% Similarity=0.075 Sum_probs=42.6
Q ss_pred EEEEecCCCChHHHHHHHHHhCCceEEEEEEEeeCCE-EEEEEEEEcCCCCCCHHHHHHHH
Q 046178 450 IRVQSENVNHPAAKLMSSLRDLDLQLHHASMSCVNDL-MLQDIVVRVPDGLRTEDALRSAL 509 (515)
Q Consensus 450 I~I~C~~r~glL~~Im~aLeeL~LdV~~a~~S~~~~~-vl~~i~vkv~~~~~s~e~L~~aL 509 (515)
|-+..++++|.|.+|+..|...|+++.+..+-...+. .-|.|.+.+.. ..+.++++|
T Consensus 3 l~f~l~~~pG~L~~vL~~f~~~~iNlt~IeSRP~~~~~~~y~Ffvd~~~---~~~~~~~~l 60 (74)
T cd04904 3 LIFSLKEEVGALARALKLFEEFGVNLTHIESRPSRRNGSEYEFFVDCEV---DRGDLDQLI 60 (74)
T ss_pred EEEEeCCCCcHHHHHHHHHHHCCCcEEEEECCCCCCCCceEEEEEEEEc---ChHHHHHHH
Confidence 3445578999999999999999999999998876653 45677777764 334455554
No 91
>PRK11589 gcvR glycine cleavage system transcriptional repressor; Provisional
Probab=77.73 E-value=5.4 Score=38.80 Aligned_cols=64 Identities=5% Similarity=0.007 Sum_probs=51.0
Q ss_pred CeEEEEEEecCCCChHHHHHHHHHhCCceEEEEEEEeeCCEEEEEEEEEcCCCCCCHHHHHHHHHH
Q 046178 446 SDAMIRVQSENVNHPAAKLMSSLRDLDLQLHHASMSCVNDLMLQDIVVRVPDGLRTEDALRSALLR 511 (515)
Q Consensus 446 ~e~~I~I~C~~r~glL~~Im~aLeeL~LdV~~a~~S~~~~~vl~~i~vkv~~~~~s~e~L~~aL~~ 511 (515)
..++|.+.+++|+|+...|-++|.+.|.++..++.+..++.+--.+.+..+. .+.++|+.+|..
T Consensus 7 ~~lviTviG~DrpGIVa~vs~~l~~~g~NI~ds~~t~lgg~Fa~i~lvs~~~--~~~~~le~~L~~ 70 (190)
T PRK11589 7 HYLVITALGADRPGIVNTITRHVSSCGCNIEDSRLAMLGEEFTFIMLLSGSW--NAITLIESTLPL 70 (190)
T ss_pred cEEEEEEEcCCCChHHHHHHHHHHHcCCCeeehhhHhhCCceEEEEEEeCCh--hHHHHHHHHHHh
Confidence 4578999999999999999999999999999999999999655455554333 256677766643
No 92
>cd04901 ACT_3PGDH C-terminal ACT (regulatory) domain of D-3-Phosphoglycerate Dehydrogenase (3PGDH) found in fungi and bacteria. The C-terminal ACT (regulatory) domain of D-3-Phosphoglycerate Dehydrogenase (3PGDH) found in fungi and bacteria. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In Escherichia coli, the SerA 3PGDH is feedback-controlled by the end product L-serine in an allosteric manner. In the homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active site is postulated to involve the tethering of the regulatory domains together to create a rigid quaternary structure with a solvent-
Probab=76.92 E-value=3.1 Score=32.35 Aligned_cols=47 Identities=11% Similarity=0.094 Sum_probs=35.6
Q ss_pred EEEEecCCCChHHHHHHHHHhCCceEEEEEEEeeCCEEEEEEEEEcC
Q 046178 450 IRVQSENVNHPAAKLMSSLRDLDLQLHHASMSCVNDLMLQDIVVRVP 496 (515)
Q Consensus 450 I~I~C~~r~glL~~Im~aLeeL~LdV~~a~~S~~~~~vl~~i~vkv~ 496 (515)
|-+.+..++|++.+|+..|.+.+.++........++..+-.+.+.+.
T Consensus 2 ~~~~~~d~~g~l~~i~~~l~~~~~nI~~~~~~~~~~~a~~~~~~~~~ 48 (69)
T cd04901 2 ILHIHKNVPGVLGQINTILAEHNINIAAQYLQTRGEIGYVVIDIDSE 48 (69)
T ss_pred EEEEecCCCcHHHHHHHHHHHcCCCHHHHhccCCCCEEEEEEEcCCC
Confidence 34578899999999999999999999877665544555555555544
No 93
>COG3830 ACT domain-containing protein [Signal transduction mechanisms]
Probab=75.68 E-value=4.8 Score=34.60 Aligned_cols=66 Identities=17% Similarity=0.192 Sum_probs=54.8
Q ss_pred eEEEEEEecCCCChHHHHHHHHHhCCceEEEEEEEeeCCEEEEEEEEEcCCCCCCHHHHHHHHHHH
Q 046178 447 DAMIRVQSENVNHPAAKLMSSLRDLDLQLHHASMSCVNDLMLQDIVVRVPDGLRTEDALRSALLRR 512 (515)
Q Consensus 447 e~~I~I~C~~r~glL~~Im~aLeeL~LdV~~a~~S~~~~~vl~~i~vkv~~~~~s~e~L~~aL~~~ 512 (515)
-++|.|.-.+|+|+.+.|..+|-+++++++..+=+..++++--.+.|..+....+-.+|+..|...
T Consensus 3 ~avITV~GkDr~GIva~is~vLAe~~vNIldisQtvm~~~ftm~~lV~~~~~~~d~~~lr~~l~~~ 68 (90)
T COG3830 3 RAVITVIGKDRVGIVAAVSRVLAEHGVNILDISQTVMDGFFTMIMLVDISKEVVDFAALRDELAAE 68 (90)
T ss_pred eEEEEEEcCCCCchhHHHHHHHHHcCCcEEEHHHHHHhhhceeeeEEcCChHhccHHHHHHHHHHH
Confidence 367889999999999999999999999999999999999887777777776656666677655543
No 94
>cd04902 ACT_3PGDH-xct C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH). The C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with an extended C-terminal (xct) region from bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback-controlled by the end product L-serine in an allosteric manner. Some 3PGDH enzymes have an additional domain formed by an extended C-terminal region. This additional domain introduces significant asymmetry to the homotetramer. Adjacent ACT (regulatory) domains interact, creating two serine-binding sites, however, this asymmetric arrangement results in the formation of two different and distinct domain interfaces between iden
Probab=74.70 E-value=12 Score=29.23 Aligned_cols=57 Identities=14% Similarity=0.131 Sum_probs=40.9
Q ss_pred EEEEecCCCChHHHHHHHHHhCCceEEEEEEEee--CCEEEEEEEEEcCCCCCCHHHHHHHHH
Q 046178 450 IRVQSENVNHPAAKLMSSLRDLDLQLHHASMSCV--NDLMLQDIVVRVPDGLRTEDALRSALL 510 (515)
Q Consensus 450 I~I~C~~r~glL~~Im~aLeeL~LdV~~a~~S~~--~~~vl~~i~vkv~~~~~s~e~L~~aL~ 510 (515)
+-+..+.++|.+.+|.+.|.+.|+++.+...... ++.....+.++.. .++++.++|.
T Consensus 2 l~v~~~d~~G~l~~i~~~l~~~~inI~~~~~~~~~~~~~~~~~i~v~~~----~~~~~~~~l~ 60 (73)
T cd04902 2 LVVRNTDRPGVIGKVGTILGEAGINIAGMQVGRDEPGGEALMVLSVDEP----VPDEVLEELR 60 (73)
T ss_pred EEEEeCCCCCHHHHHHHHHHHcCcChhheEeeccCCCCEEEEEEEeCCC----CCHHHHHHHH
Confidence 3467899999999999999999999988876653 4566666665432 2335555554
No 95
>PF13710 ACT_5: ACT domain; PDB: 2FGC_A 2PC6_A 2F1F_B.
Probab=74.43 E-value=7.7 Score=30.77 Aligned_cols=54 Identities=17% Similarity=0.109 Sum_probs=38.8
Q ss_pred CCCChHHHHHHHHHhCCceEEEEEEEe--eCCEEEEEEEEEcCCCCCCHHHHHHHHHH
Q 046178 456 NVNHPAAKLMSSLRDLDLQLHHASMSC--VNDLMLQDIVVRVPDGLRTEDALRSALLR 511 (515)
Q Consensus 456 ~r~glL~~Im~aLeeL~LdV~~a~~S~--~~~~vl~~i~vkv~~~~~s~e~L~~aL~~ 511 (515)
+++|.|.+|+..+..-|+++.+.+++. .++..-.++.+.-. .-..++|..-|.+
T Consensus 1 n~~GvL~Ri~~vf~rRg~nI~sl~v~~~~~~~~~riti~v~~~--~~~i~~l~~Ql~K 56 (63)
T PF13710_consen 1 NQPGVLNRITGVFRRRGFNIESLSVGPTEDPGISRITIVVSGD--DREIEQLVKQLEK 56 (63)
T ss_dssp SSTTHHHHHHHHHHTTT-EECEEEEEE-SSTTEEEEEEEEES---CCHHHHHHHHHHC
T ss_pred CCcHHHHHHHHHHhcCCeEEeeEEeeecCCCCEEEEEEEEeeC--chhHHHHHHHHhc
Confidence 468999999999999999999999998 44565556666532 2355666666654
No 96
>PRK11061 fused phosphoenolpyruvate-protein phosphotransferase PtsP/GAF domain; Provisional
Probab=73.79 E-value=3.7 Score=47.86 Aligned_cols=71 Identities=14% Similarity=0.192 Sum_probs=48.3
Q ss_pred eeCCCCCccceEeeCCCeeeeeCCCCcCcCc-chhHHHHhhcCCceEEEEecCC-----ceEeeccccccccChhHHHHH
Q 046178 139 SFGAGVGIPGRAQSSGSLVWLTGSHELQFYN-CERAKEAQSHGIETFVCIPTSC-----GVLELGSSDLIRENWGLVHQV 212 (515)
Q Consensus 139 sf~~g~GlpG~a~~sg~~~Wl~~~~~~~~~~-~~r~~~a~~~giqTivciP~~~-----GVvELGSt~~v~E~~~lv~~i 212 (515)
.|+.|+|+.|+++.+++|+++.+...-+... +.+ +...+++.++|||+.. |||.+.....-.-+.+-+..+
T Consensus 67 ~l~~geGi~G~Va~tg~pV~V~Dv~~dprf~~~~~---~~~~~~~S~L~VPL~~~geVIGVL~v~~~~~~~Fs~~d~~lL 143 (748)
T PRK11061 67 TLAFDEGIVGLVGRLAEPINLADAQKHPSFKYIPS---VKEERFRAFLGVPIIYRRQLLGVLVVQQRELRQFDESEESFL 143 (748)
T ss_pred eccCCcchHHHHhccCceEEECCcccCcccccCcc---ccCccceEEEEEEEeeCCEEEEEEEEeeCCCCCCCHHHHHHH
Confidence 5788999999999999999998776533221 121 1236899999999833 677777666544444333333
No 97
>TIGR00119 acolac_sm acetolactate synthase, small subunit. acetohydroxyacid synthase is a synonym.
Probab=73.20 E-value=13 Score=35.14 Aligned_cols=61 Identities=15% Similarity=0.159 Sum_probs=45.7
Q ss_pred EEEEEecCCCChHHHHHHHHHhCCceEEEEEEEeeC--CEEEEEEEEEcCCCCCCHHHHHHHHHH
Q 046178 449 MIRVQSENVNHPAAKLMSSLRDLDLQLHHASMSCVN--DLMLQDIVVRVPDGLRTEDALRSALLR 511 (515)
Q Consensus 449 ~I~I~C~~r~glL~~Im~aLeeL~LdV~~a~~S~~~--~~vl~~i~vkv~~~~~s~e~L~~aL~~ 511 (515)
.|.|.-++++|.|.+|...|...|+.+.+..+...+ +...-++++.- ..-..++|.+-|.+
T Consensus 3 ~isI~ven~pGvL~rI~~lf~rrg~NI~Sl~v~~t~~~~~sriti~V~~--d~~~i~qi~kQl~K 65 (157)
T TIGR00119 3 ILSVLVENEPGVLSRVAGLFTRRGFNIESLTVGPTEDPDLSRMTIVVVG--DDKVLEQITKQLNK 65 (157)
T ss_pred EEEEEEcCCCcHHHHHHHHHHhCCceEEEEEEeecCCCCEEEEEEEEEC--CHHHHHHHHHHHhc
Confidence 467888999999999999999999999999988776 35555666653 22345566655554
No 98
>KOG3582 consensus Mlx interactors and related transcription factors [Transcription]
Probab=73.15 E-value=0.13 Score=57.93 Aligned_cols=62 Identities=21% Similarity=0.372 Sum_probs=51.7
Q ss_pred CCCccchHHHHHHHHHHHHHHHHHhccCCCC-----CCCChhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 046178 339 ETPLNHVEAERQRREKLNHRFYALRAVVPNV-----SRMDKASLLSDAVSYIRELKVKIDDLESQLL 400 (515)
Q Consensus 339 e~~~~H~~~ER~RR~kln~~f~~LrslvP~~-----~k~dKasIL~daI~YIk~Lq~~v~~Le~~~~ 400 (515)
..+..|.-+|.+||..++-.|..|.+++-+. .|+.++.-+..++.||..++.....+.++-.
T Consensus 650 ~r~it~~Sa~qkrr~n~kl~~~~~Ns~~Sn~~~l~s~k~t~~~~~q~~vhYi~~t~~e~~~v~~e~~ 716 (856)
T KOG3582|consen 650 NRPITHISAEQKRRFNIKLQFDVLNSLSSNSSSLSSIKTTNSNSLQKTVHYINVTQQERVPVQEEAH 716 (856)
T ss_pred CCcccCccHHHHHHhhHHhhhHhhhhhccCcccccchhhhccccccCceeeeeccchhccccchhhh
Confidence 4678999999999999999999999998753 5677777799999999998877776665543
No 99
>COG0788 PurU Formyltetrahydrofolate hydrolase [Nucleotide transport and metabolism]
Probab=70.96 E-value=21 Score=36.73 Aligned_cols=66 Identities=12% Similarity=0.094 Sum_probs=51.2
Q ss_pred CeEEEEEEecCCCChHHHHHHHHHhCCceEEEEEEEee--CCEEEEEEEEEcCCCCCCHHHHHHHHHH
Q 046178 446 SDAMIRVQSENVNHPAAKLMSSLRDLDLQLHHASMSCV--NDLMLQDIVVRVPDGLRTEDALRSALLR 511 (515)
Q Consensus 446 ~e~~I~I~C~~r~glL~~Im~aLeeL~LdV~~a~~S~~--~~~vl~~i~vkv~~~~~s~e~L~~aL~~ 511 (515)
..+.+.+.|+.++|+...|-..|-+.|..+++++--.. .+++|--+....+++..+.++|++++..
T Consensus 6 ~~~~LtvsCpd~~GiVaais~~l~~~g~NI~~~~qf~D~~~g~FFmR~~f~~~~~~~~~~~l~~~f~~ 73 (287)
T COG0788 6 DTFILTVSCPDQPGIVAAISGFLAEHGCNIVDSDQFDDPETGRFFMRVEFEGEGGPLDREALRAAFAP 73 (287)
T ss_pred cceEEEEecCCCCCcHHHHHHHHHHcCCceeecccccccccCeEEEEEEEecCCCcccHHHHHHHHHH
Confidence 35678999999999999999999999999999877632 2345555555545555788888888765
No 100
>PRK06737 acetolactate synthase 1 regulatory subunit; Validated
Probab=70.43 E-value=17 Score=30.25 Aligned_cols=60 Identities=7% Similarity=-0.033 Sum_probs=42.5
Q ss_pred EEEEEecCCCChHHHHHHHHHhCCceEEEEEEEeeCC--EEEEEEEEEcCCCCCCHHHHHHHHH
Q 046178 449 MIRVQSENVNHPAAKLMSSLRDLDLQLHHASMSCVND--LMLQDIVVRVPDGLRTEDALRSALL 510 (515)
Q Consensus 449 ~I~I~C~~r~glL~~Im~aLeeL~LdV~~a~~S~~~~--~vl~~i~vkv~~~~~s~e~L~~aL~ 510 (515)
.|.+.-.+++|.|.+|..+|...|+.+.+.+++..++ ..--++.+. + ..-..++|.+-|.
T Consensus 4 tisi~v~n~pGVL~Ri~~lf~rRgfNI~Sl~vg~te~~~~sriti~~~-~-~~~~i~qi~kQL~ 65 (76)
T PRK06737 4 TFSLVIHNDPSVLLRISGIFARRGYYISSLNLNERDTSGVSEMKLTAV-C-TENEATLLVSQLK 65 (76)
T ss_pred EEEEEEecCCCHHHHHHHHHhccCcceEEEEecccCCCCeeEEEEEEE-C-CHHHHHHHHHHHh
Confidence 5778888999999999999999999999998886654 444455553 2 2223445554443
No 101
>PRK11152 ilvM acetolactate synthase 2 regulatory subunit; Provisional
Probab=69.78 E-value=30 Score=28.74 Aligned_cols=60 Identities=15% Similarity=0.187 Sum_probs=44.5
Q ss_pred EEEEEecCCCChHHHHHHHHHhCCceEEEEEEEeeC--CEEEEEEEEEcCCCCCCHHHHHHHHHH
Q 046178 449 MIRVQSENVNHPAAKLMSSLRDLDLQLHHASMSCVN--DLMLQDIVVRVPDGLRTEDALRSALLR 511 (515)
Q Consensus 449 ~I~I~C~~r~glL~~Im~aLeeL~LdV~~a~~S~~~--~~vl~~i~vkv~~~~~s~e~L~~aL~~ 511 (515)
.|.+.-.+++|.|.+|+..++.-|+.|.+.++.... +..--++++. +....++|.+-|.+
T Consensus 5 ~lsi~v~n~pGVL~Ri~~lf~rRGfnI~sl~v~~t~~~~~sriti~v~---~~~~i~ql~kQL~K 66 (76)
T PRK11152 5 QLTIKARFRPEVLERVLRVVRHRGFQVCSMNMTQNTDAQNINIELTVA---SERPIDLLSSQLNK 66 (76)
T ss_pred EEEEEEECCccHHHHHHHHHhcCCeeeeeEEeeecCCCCEEEEEEEEC---CCchHHHHHHHHhc
Confidence 467777899999999999999999999999998854 4444455553 33455666665544
No 102
>PRK11895 ilvH acetolactate synthase 3 regulatory subunit; Reviewed
Probab=69.46 E-value=17 Score=34.49 Aligned_cols=61 Identities=11% Similarity=0.094 Sum_probs=44.3
Q ss_pred EEEEEecCCCChHHHHHHHHHhCCceEEEEEEEeeC--CEEEEEEEEEcCCCCCCHHHHHHHHHH
Q 046178 449 MIRVQSENVNHPAAKLMSSLRDLDLQLHHASMSCVN--DLMLQDIVVRVPDGLRTEDALRSALLR 511 (515)
Q Consensus 449 ~I~I~C~~r~glL~~Im~aLeeL~LdV~~a~~S~~~--~~vl~~i~vkv~~~~~s~e~L~~aL~~ 511 (515)
.|.|.-++++|.|.+|...|...|+.+.+..+.... +....++++... ....++|..-|.+
T Consensus 4 ~IsV~veN~pGvL~rI~~lf~rrg~NI~Sl~v~~te~~~~sriti~V~~~--~~~i~qi~kQl~K 66 (161)
T PRK11895 4 TLSVLVENEPGVLSRVAGLFSRRGYNIESLTVGPTEDPGLSRMTIVTSGD--EQVIEQITKQLNK 66 (161)
T ss_pred EEEEEEcCCCcHHHHHHHHHHhCCCcEEEEEeeecCCCCEEEEEEEEECC--HHHHHHHHHHHhc
Confidence 577888999999999999999999999999888765 445556666532 2234455554443
No 103
>CHL00100 ilvH acetohydroxyacid synthase small subunit
Probab=68.28 E-value=17 Score=34.91 Aligned_cols=65 Identities=14% Similarity=0.193 Sum_probs=46.9
Q ss_pred EEEEEecCCCChHHHHHHHHHhCCceEEEEEEEeeCCEEEEEEEEEcCCCCCCHHHHHHHHHHHh
Q 046178 449 MIRVQSENVNHPAAKLMSSLRDLDLQLHHASMSCVNDLMLQDIVVRVPDGLRTEDALRSALLRRL 513 (515)
Q Consensus 449 ~I~I~C~~r~glL~~Im~aLeeL~LdV~~a~~S~~~~~vl~~i~vkv~~~~~s~e~L~~aL~~~l 513 (515)
.|.|.-.+++|.|.+|...|...|+++.+.++....+.-+..+.+-++.+.-..++|++.|.+-+
T Consensus 4 ~isvlv~n~PGVL~RIt~lFsrRg~NIesLsv~~t~~~~~sr~TIvv~~~~~~ieqL~kQL~KLi 68 (174)
T CHL00100 4 TLSVLVEDESGVLTRIAGLFARRGFNIESLAVGPAEQKGISRITMVVPGDDRTIEQLTKQLYKLV 68 (174)
T ss_pred EEEEEEeCcCCHHHHHHHHHHhCCCCeeEEEeeEcCCCCccEEEEEEECCHHHHHHHHHHHHHHh
Confidence 57788899999999999999999999999999774433222333334443223778888887643
No 104
>cd04906 ACT_ThrD-I_1 First of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes the first of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=66.69 E-value=37 Score=28.14 Aligned_cols=63 Identities=13% Similarity=0.070 Sum_probs=40.9
Q ss_pred eEEEEEEecCCCChHHHHHHHHHhCCceEEEEEEEeeC-CEEEEEEEEEcCCCCCCHHHHHHHHHH
Q 046178 447 DAMIRVQSENVNHPAAKLMSSLRDLDLQLHHASMSCVN-DLMLQDIVVRVPDGLRTEDALRSALLR 511 (515)
Q Consensus 447 e~~I~I~C~~r~glL~~Im~aLeeL~LdV~~a~~S~~~-~~vl~~i~vkv~~~~~s~e~L~~aL~~ 511 (515)
+.++.|.=|.++|-|.+++++|- +.+|......... +...-.+.++++++.-..+++.++|.+
T Consensus 1 e~vl~v~ipD~PG~L~~ll~~l~--~anI~~~~y~~~~~~~~~v~i~ie~~~~~~~~~~i~~~L~~ 64 (85)
T cd04906 1 EALLAVTIPERPGSFKKFCELIG--PRNITEFNYRYADEKDAHIFVGVSVANGAEELAELLEDLKS 64 (85)
T ss_pred CeEEEEecCCCCcHHHHHHHHhC--CCceeEEEEEccCCCeeEEEEEEEeCCcHHHHHHHHHHHHH
Confidence 45788999999999999999998 5566655554332 333344556666533345566666543
No 105
>TIGR00691 spoT_relA (p)ppGpp synthetase, RelA/SpoT family. (p)ppGpp is a regulatory metabolite of the stringent response, but appears also to be involved in antibiotic biosynthesis in some species.
Probab=64.59 E-value=22 Score=41.13 Aligned_cols=60 Identities=13% Similarity=0.156 Sum_probs=48.9
Q ss_pred eEEEEEeCC-----eEEEEEEecCCCChHHHHHHHHHhCCceEEEEEEEeeC-CEEEEEEEEEcCC
Q 046178 438 EVETKIMGS-----DAMIRVQSENVNHPAAKLMSSLRDLDLQLHHASMSCVN-DLMLQDIVVRVPD 497 (515)
Q Consensus 438 ~VeV~i~g~-----e~~I~I~C~~r~glL~~Im~aLeeL~LdV~~a~~S~~~-~~vl~~i~vkv~~ 497 (515)
-|.|+-... .+.|+|.+.+++|+|.+|+.+|.+.+.+|.++++...+ ++..-.|.++|.+
T Consensus 596 ~I~v~W~~~~~~~f~v~I~I~~~dr~GlLadI~~~ia~~~~nI~~v~~~~~~~~~~~~~~~ieV~~ 661 (683)
T TIGR00691 596 IIEVEWNASKPRRFIVDINIEAVDRKGVLSDLTTAISENDSNIVSISTKTYGKREAILNITVEIKN 661 (683)
T ss_pred EEEEEecCCCCceeEEEEEEEEecCCCHHHHHHHHHHHCCCCeEEEEeEEcCCCEEEEEEEEEECC
Confidence 366665432 35789999999999999999999999999999998774 6666678888875
No 106
>PRK13562 acetolactate synthase 1 regulatory subunit; Provisional
Probab=64.41 E-value=22 Score=30.23 Aligned_cols=62 Identities=13% Similarity=0.190 Sum_probs=44.6
Q ss_pred EEEEEecCCCChHHHHHHHHHhCCceEEEEEEEeeCCEE--EEEEEEEcCCCCCCHHHHHHHHHH
Q 046178 449 MIRVQSENVNHPAAKLMSSLRDLDLQLHHASMSCVNDLM--LQDIVVRVPDGLRTEDALRSALLR 511 (515)
Q Consensus 449 ~I~I~C~~r~glL~~Im~aLeeL~LdV~~a~~S~~~~~v--l~~i~vkv~~~~~s~e~L~~aL~~ 511 (515)
.|.+.-.+++|.|.+|-.+|...|+.+.+.+++...+.- --+|++.+++. -..++|.+-|.+
T Consensus 4 ~isvlVeN~~GVL~Rit~lFsRRg~NI~SLtvg~Te~~~iSRmtivv~~~d~-~~ieqI~kQL~K 67 (84)
T PRK13562 4 ILKLQVADQVSTLNRITSAFVRLQYNIDTLHVTHSEQPGISNMEIQVDIQDD-TSLHILIKKLKQ 67 (84)
T ss_pred EEEEEEECCCCHHHHHHHHHhccCcCeeeEEecccCCCCceEEEEEEeCCCH-HHHHHHHHHHhC
Confidence 577888899999999999999999999998888776644 44555543332 244555555544
No 107
>PF05088 Bac_GDH: Bacterial NAD-glutamate dehydrogenase
Probab=64.11 E-value=35 Score=42.98 Aligned_cols=69 Identities=14% Similarity=0.277 Sum_probs=55.1
Q ss_pred CeEEEEEEecCCCChHHHHHHHHHhCCceEEEEEEEeeC---C--EEEEEEEEEcCCCC-CCHHHHHHHHHHHhh
Q 046178 446 SDAMIRVQSENVNHPAAKLMSSLRDLDLQLHHASMSCVN---D--LMLQDIVVRVPDGL-RTEDALRSALLRRLD 514 (515)
Q Consensus 446 ~e~~I~I~C~~r~glL~~Im~aLeeL~LdV~~a~~S~~~---~--~vl~~i~vkv~~~~-~s~e~L~~aL~~~l~ 514 (515)
+.+.++|..+.++.+|++||-+|+++||.|+...--... + ..+|.|.+....+. .+.++++..+..++.
T Consensus 488 ~~~~lkiy~~~~~~~Ls~vlPilenlGl~V~~e~~~~i~~~~~~~~~i~~F~l~~~~~~~~~~~~~~~~~~~a~~ 562 (1528)
T PF05088_consen 488 GRLRLKIYHPGEPLPLSDVLPILENLGLRVIDERPYEIRRADGRRVWIHDFGLQYPDGDALDLDDIRERFEEAFE 562 (1528)
T ss_pred CeEEEEEEcCCCCcCHHHHHHHHHhCCCEEEEEecceeecCCCceEEEEEEEEecCCCccccHHHHHHHHHHHHH
Confidence 457899999999999999999999999999987543322 2 67899999987764 677777777776653
No 108
>PRK10872 relA (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional
Probab=63.99 E-value=25 Score=41.12 Aligned_cols=60 Identities=12% Similarity=0.148 Sum_probs=48.6
Q ss_pred eEEEEEeCC-----eEEEEEEecCCCChHHHHHHHHHhCCceEEEEEEEee--CCEEEEEEEEEcCC
Q 046178 438 EVETKIMGS-----DAMIRVQSENVNHPAAKLMSSLRDLDLQLHHASMSCV--NDLMLQDIVVRVPD 497 (515)
Q Consensus 438 ~VeV~i~g~-----e~~I~I~C~~r~glL~~Im~aLeeL~LdV~~a~~S~~--~~~vl~~i~vkv~~ 497 (515)
-|+|+-.+. .+.|+|.+.++.|+|.+|..+|.+.++.|.++++... ++...-.|.++|.+
T Consensus 652 ~I~V~W~~~~~~~~~v~I~I~~~Dr~GlL~dIt~~is~~~~nI~~v~~~~~~~~~~~~~~~~ieV~~ 718 (743)
T PRK10872 652 IVDAVWGESYSSGYSLVVRVTANDRSGLLRDITTILANEKVNVLGVASRSDTKQQLATIDMTIEIYN 718 (743)
T ss_pred EEEeEecCCCCceeEEEEEEEEcCCCCHHHHHHHHHHHCCCCeEEEEeEEcCCCCEEEEEEEEEECC
Confidence 467766432 2578999999999999999999999999999998765 46666678888875
No 109
>PRK11092 bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase; Provisional
Probab=62.27 E-value=26 Score=40.73 Aligned_cols=61 Identities=13% Similarity=0.043 Sum_probs=49.0
Q ss_pred eEEEEEeCC-----eEEEEEEecCCCChHHHHHHHHHhCCceEEEEEEEeeC-CEEEEEEEEEcCCC
Q 046178 438 EVETKIMGS-----DAMIRVQSENVNHPAAKLMSSLRDLDLQLHHASMSCVN-DLMLQDIVVRVPDG 498 (515)
Q Consensus 438 ~VeV~i~g~-----e~~I~I~C~~r~glL~~Im~aLeeL~LdV~~a~~S~~~-~~vl~~i~vkv~~~ 498 (515)
-|+|+-... .+.|+|.+.++.|+|.+|+.+|.+.++.+.++++...+ +...-.|.++|.+.
T Consensus 612 ~i~v~W~~~~~~~~~v~i~I~~~dr~GlL~dI~~~i~~~~~nI~~v~~~~~~~~~~~~~~~ieV~~~ 678 (702)
T PRK11092 612 FMAVEWDKETEQEFIAEIKVEMFNHQGALANLTAAINTTGSNIQSLNTEEKDGRVYSAFIRLTARDR 678 (702)
T ss_pred eEEeEECCCCCceeEEEEEEEEeCCCCHHHHHHHHHHHCCCCeEEEEEEEcCCCEEEEEEEEEECCH
Confidence 466766432 35789999999999999999999999999999987765 45566788888753
No 110
>PRK00227 glnD PII uridylyl-transferase; Provisional
Probab=61.79 E-value=43 Score=38.98 Aligned_cols=65 Identities=9% Similarity=0.037 Sum_probs=54.2
Q ss_pred EEEEEecCCCChHHHHHHHHHhCCceEEEEEEEeeCCEEEEEEEEEcCCC-CCCHHHHHHHHHHHhh
Q 046178 449 MIRVQSENVNHPAAKLMSSLRDLDLQLHHASMSCVNDLMLQDIVVRVPDG-LRTEDALRSALLRRLD 514 (515)
Q Consensus 449 ~I~I~C~~r~glL~~Im~aLeeL~LdV~~a~~S~~~~~vl~~i~vkv~~~-~~s~e~L~~aL~~~l~ 514 (515)
+.-+.|+.+.|.+.++.-.|--.++.|++|++.+ ++..+..|.|.-.-+ .-++..+++.+.+++.
T Consensus 549 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~a~~~~-~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 614 (693)
T PRK00227 549 FTVIWHGDYPRELVRVLALIAAKGWNILSARMVA-NGPWSAEFDVRANGPQDFDPQEFLQAYKSGVY 614 (693)
T ss_pred EEEEecCCcccHHHHHHHHHHhcCceeeEeEEec-CCceEEEEEEecCCCCCCChHHHHHHHHHhhc
Confidence 3334569999999999999999999999999999 888888888876444 5688899998887763
No 111
>smart00065 GAF Domain present in phytochromes and cGMP-specific phosphodiesterases. Mutations within these domains in PDE6B result in autosomal recessive inheritance of retinitis pigmentosa.
Probab=61.11 E-value=11 Score=31.25 Aligned_cols=76 Identities=20% Similarity=0.353 Sum_probs=48.6
Q ss_pred eeCCCCCccceEeeCCCeeeeeCCCCcCcCcchhHHHHhhcCCceEEEEecC-----CceEeecccc-c---cccChhHH
Q 046178 139 SFGAGVGIPGRAQSSGSLVWLTGSHELQFYNCERAKEAQSHGIETFVCIPTS-----CGVLELGSSD-L---IRENWGLV 209 (515)
Q Consensus 139 sf~~g~GlpG~a~~sg~~~Wl~~~~~~~~~~~~r~~~a~~~giqTivciP~~-----~GVvELGSt~-~---v~E~~~lv 209 (515)
.|+.+.++.++++.+++++.+.+..... .+.........|++.++|+|+. -|++.+.+.+ . -.++.+++
T Consensus 51 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~s~~~~Pl~~~~~~~G~l~~~~~~~~~~~~~~~~~~l 128 (149)
T smart00065 51 RYPLGEGLAGRVAETGRPLNIPDVEADP--VFALDLLGRYQGVRSFLAVPLVADGELVGVLALHNKDSPRPFTEEDEELL 128 (149)
T ss_pred EecCCCChHHHHHHcCCeEEeechhhCC--ccccccccceeceeeEEEeeeeecCEEEEEEEEEecCCCCCCCHHHHHHH
Confidence 4667778889999999999888655432 2223333334569999999972 4788887762 1 23344555
Q ss_pred HHHHHHh
Q 046178 210 HQVKSLF 216 (515)
Q Consensus 210 ~~ik~~F 216 (515)
+.+...+
T Consensus 129 ~~~~~~i 135 (149)
T smart00065 129 QALANQL 135 (149)
T ss_pred HHHHHHH
Confidence 5554444
No 112
>PF01590 GAF: GAF domain; InterPro: IPR003018 This domain is present in phytochromes and cGMP-specific phosphodiesterases. cGMP-dependent 3',5'-cyclic phosphodiesterase (3.1.4.17 from EC) catalyses the conversion of guanosine 3',5'-cyclic phosphate to guanosine 5'-phosphate. A phytochrome is a regulatory photoreceptor which exists in 2 forms that are reversibly interconvertible by light, the PR form that absorbs maximally in the red region of the spectrum, and the PFR form that absorbs maximally in the far-red region. This domain is also found in NifA, a transcriptional activator which is required for activation of most Nif operons which are directly involved in nitrogen fixation. NifA interacts with sigma-54.; GO: 0005515 protein binding; PDB: 2Y8H_A 3DBA_B 3CI6_A 3E0Y_B 2W3G_B 2W3D_A 2W3E_A 2Y79_B 2W3H_A 2W3F_A ....
Probab=59.40 E-value=11 Score=33.06 Aligned_cols=62 Identities=19% Similarity=0.294 Sum_probs=43.6
Q ss_pred eeCCCCCccceEeeCCCeeeeeCCCCcCcCcc--------------hhHHHHhhcCCceEEEEec-----CCceEeeccc
Q 046178 139 SFGAGVGIPGRAQSSGSLVWLTGSHELQFYNC--------------ERAKEAQSHGIETFVCIPT-----SCGVLELGSS 199 (515)
Q Consensus 139 sf~~g~GlpG~a~~sg~~~Wl~~~~~~~~~~~--------------~r~~~a~~~giqTivciP~-----~~GVvELGSt 199 (515)
.+..+.+..|+++.+++++.+.+....+.... .+..+ ...|+++++|+|+ .-|||.|..+
T Consensus 51 ~~~~~~~~~~~~~~~~~~~~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~s~l~vPi~~~g~~~G~l~l~~~ 129 (154)
T PF01590_consen 51 RLSMDESICGQVLQSREPIVISDVAADPRFAPQIAAQSALRALSSAERPFL-AEYGVRSYLCVPIISGGRLIGVLSLYRT 129 (154)
T ss_dssp EEETTSSHHHHHHHHTSCEEESSSGGSTTSSCHHHHHHTTBTTTHHHHHHH-HTTTESEEEEEEEEETTEEEEEEEEEEE
T ss_pred cccccccHHHHHHhCCCeEeecccccccccccccccccccccccccccccc-ccccCceeeEeeeecccCcEEEEEEEEC
Confidence 35556677999999999999988654332111 11111 1579999999998 3479999888
Q ss_pred cc
Q 046178 200 DL 201 (515)
Q Consensus 200 ~~ 201 (515)
..
T Consensus 130 ~~ 131 (154)
T PF01590_consen 130 RP 131 (154)
T ss_dssp SS
T ss_pred CC
Confidence 77
No 113
>cd04885 ACT_ThrD-I Tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes each of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=59.09 E-value=48 Score=26.08 Aligned_cols=59 Identities=15% Similarity=0.086 Sum_probs=39.4
Q ss_pred EEEecCCCChHHHHHHHHHhCCceEEEEEEEeeC-CEEEEEEEEEcCCCCCCHHHHHHHHHH
Q 046178 451 RVQSENVNHPAAKLMSSLRDLDLQLHHASMSCVN-DLMLQDIVVRVPDGLRTEDALRSALLR 511 (515)
Q Consensus 451 ~I~C~~r~glL~~Im~aLeeL~LdV~~a~~S~~~-~~vl~~i~vkv~~~~~s~e~L~~aL~~ 511 (515)
+|.=|.++|-|.++++.|.+ +.+|+..+....+ +.....+.+++.+. -..++|.++|.+
T Consensus 2 ~v~ipdkPG~l~~~~~~i~~-~~nI~~~~~~~~~~~~~~v~v~ie~~~~-~~~~~i~~~L~~ 61 (68)
T cd04885 2 AVTFPERPGALKKFLELLGP-PRNITEFHYRNQGGDEARVLVGIQVPDR-EDLAELKERLEA 61 (68)
T ss_pred EEECCCCCCHHHHHHHHhCC-CCcEEEEEEEcCCCCceEEEEEEEeCCH-HHHHHHHHHHHH
Confidence 56678999999999999999 9999988776643 12223344555432 234556665543
No 114
>cd04929 ACT_TPH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxytryptamine (serotonin) and the first reaction in the synthesis of melatonin. Very little is known about the role of the ACT domain in TPH, which appears to be regulated by phosphorylation but not by its substrate or cofactor. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=57.61 E-value=70 Score=26.18 Aligned_cols=55 Identities=15% Similarity=0.094 Sum_probs=41.2
Q ss_pred EecCCCChHHHHHHHHHhCCceEEEEEEEeeCC-EEEEEEEEEcCCCCCCHHHHHHHHH
Q 046178 453 QSENVNHPAAKLMSSLRDLDLQLHHASMSCVND-LMLQDIVVRVPDGLRTEDALRSALL 510 (515)
Q Consensus 453 ~C~~r~glL~~Im~aLeeL~LdV~~a~~S~~~~-~vl~~i~vkv~~~~~s~e~L~~aL~ 510 (515)
.-++++|.|.+++..|...++.+.+..+-...+ ..-|.|-+.+... .+.++++|.
T Consensus 6 ~l~~~~g~L~~iL~~f~~~~inl~~IeSRP~~~~~~~y~F~id~e~~---~~~i~~~l~ 61 (74)
T cd04929 6 SLKNEVGGLAKALKLFQELGINVVHIESRKSKRRSSEFEIFVDCECD---QRRLDELVQ 61 (74)
T ss_pred EcCCCCcHHHHHHHHHHHCCCCEEEEEeccCCCCCceEEEEEEEEcC---HHHHHHHHH
Confidence 347889999999999999999999998877554 3456777777532 236666653
No 115
>PRK08198 threonine dehydratase; Provisional
Probab=51.64 E-value=65 Score=34.49 Aligned_cols=66 Identities=15% Similarity=0.127 Sum_probs=47.9
Q ss_pred eCCeEEEEEEecCCCChHHHHHHHHHhCCceEEEEEEEee-----CCEEEEEEEEEcCCCCCCHHHHHHHHH
Q 046178 444 MGSDAMIRVQSENVNHPAAKLMSSLRDLDLQLHHASMSCV-----NDLMLQDIVVRVPDGLRTEDALRSALL 510 (515)
Q Consensus 444 ~g~e~~I~I~C~~r~glL~~Im~aLeeL~LdV~~a~~S~~-----~~~vl~~i~vkv~~~~~s~e~L~~aL~ 510 (515)
.+..+.+.|.=+.++|.|.+|++.|.+.|.+|...+.... .+..--.+.+++.+.. ..++|..+|.
T Consensus 324 ~gr~~~l~v~l~D~PG~L~~ll~~i~~~g~NI~~i~~~~~~~~~~~~~~~v~v~ie~~~~~-~~~~l~~~L~ 394 (404)
T PRK08198 324 AGRYLKLRVRLPDRPGQLAKLLSIIAELGANVIDVDHDRFSPDLRLGEVEVELTLETRGPE-HIEEILDALR 394 (404)
T ss_pred cCCEEEEEEEeCCCCCHHHHHHHHHhhCCCceEEEEEEEccCCCCCceEEEEEEEEeCCHH-HHHHHHHHHH
Confidence 3566789999999999999999999999999998887642 2455555666663222 3455565554
No 116
>cd04922 ACT_AKi-HSDH-ThrA_2 ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). This CD includes the second of two ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). The ACT domains are positioned between the N-terminal catalytic domain of AK and the C-terminal HSDH domain found in bacteria (Escherichia coli (EC) ThrA) and higher plants (Zea mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. HSDH is the first committed reaction in the branch of the pathway that leads to Thr and Met. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pathwa
Probab=51.45 E-value=98 Score=23.38 Aligned_cols=59 Identities=12% Similarity=0.233 Sum_probs=36.5
Q ss_pred EEEEEec---CCCChHHHHHHHHHhCCceEEEEEEEeeCCEEEEEEEEEcCCCCCCHHHHHHHHHHHh
Q 046178 449 MIRVQSE---NVNHPAAKLMSSLRDLDLQLHHASMSCVNDLMLQDIVVRVPDGLRTEDALRSALLRRL 513 (515)
Q Consensus 449 ~I~I~C~---~r~glL~~Im~aLeeL~LdV~~a~~S~~~~~vl~~i~vkv~~~~~s~e~L~~aL~~~l 513 (515)
+|.|.+. ..++.+.+|+++|.+.++.|.-.+.+..+ ..+.+-+++ -+.+++.++|++++
T Consensus 3 ~isvvg~~~~~~~~~~~~i~~~l~~~~I~v~~i~~~~s~----~~is~~v~~--~~~~~~~~~lh~~~ 64 (66)
T cd04922 3 ILALVGDGMAGTPGVAATFFSALAKANVNIRAIAQGSSE----RNISAVIDE--DDATKALRAVHERF 64 (66)
T ss_pred EEEEECCCCCCCccHHHHHHHHHHHCCCCEEEEEecCcc----cEEEEEEeH--HHHHHHHHHHHHHH
Confidence 4555553 45789999999999999999766544422 222222222 12345566666665
No 117
>TIGR01127 ilvA_1Cterm threonine dehydratase, medium form. A form of threonine dehydratase with two copies of the C-terminal domain Pfam:PF00585 is described by TIGR01124. This model describes a phylogenetically distinct form with a single copy of pfam00585. This form branches with the catabolic threonine dehydratase of E. coli; many members are designated as catabolic for this reason. However, the catabolic form lacks any pfam00585 domain. Many members of this model are found in species with other Ile biosynthetic enzymes.
Probab=49.26 E-value=80 Score=33.47 Aligned_cols=66 Identities=11% Similarity=0.119 Sum_probs=47.0
Q ss_pred eCCeEEEEEEecCCCChHHHHHHHHHhCCceEEEEEEEee-----CCEEEEEEEEEcCCCCCCHHHHHHHHH
Q 046178 444 MGSDAMIRVQSENVNHPAAKLMSSLRDLDLQLHHASMSCV-----NDLMLQDIVVRVPDGLRTEDALRSALL 510 (515)
Q Consensus 444 ~g~e~~I~I~C~~r~glL~~Im~aLeeL~LdV~~a~~S~~-----~~~vl~~i~vkv~~~~~s~e~L~~aL~ 510 (515)
.|..+.+.|.=+.++|.|.+|++.+.+.+.+|++...... .+...-.+.++..+ .-..++|.++|.
T Consensus 302 ~gr~~~l~v~l~D~pG~L~~v~~~i~~~~~NI~~i~~~r~~~~~~~~~~~v~v~vet~~-~~~~~~i~~~L~ 372 (380)
T TIGR01127 302 SGRKVRIETVLPDRPGALYHLLESIAEARANIVKIDHDRLSKEIPPGFAMVEITLETRG-KEHLDEILKILR 372 (380)
T ss_pred CCCEEEEEEEeCCCCCHHHHHHHHHhcCCCcEEEEEeeccccCCCCceEEEEEEEEeCC-HHHHHHHHHHHH
Confidence 3566788999999999999999999999999998876532 23445556666553 223445555554
No 118
>PRK06382 threonine dehydratase; Provisional
Probab=47.22 E-value=73 Score=34.34 Aligned_cols=67 Identities=13% Similarity=0.105 Sum_probs=46.9
Q ss_pred eCCeEEEEEEecCCCChHHHHHHHHHhCCceEEEEEEE----ee-CCEEEEEEEEEcCCCCCCHHHHHHHHHH
Q 046178 444 MGSDAMIRVQSENVNHPAAKLMSSLRDLDLQLHHASMS----CV-NDLMLQDIVVRVPDGLRTEDALRSALLR 511 (515)
Q Consensus 444 ~g~e~~I~I~C~~r~glL~~Im~aLeeL~LdV~~a~~S----~~-~~~vl~~i~vkv~~~~~s~e~L~~aL~~ 511 (515)
.+..+.+.|.=+.++|.|.+|.+.|.+.+.+|++.... .. .+...-.|+++..+ .-..++|+++|.+
T Consensus 327 ~~~~~rl~v~v~D~pG~L~~l~~ii~~~~~nI~~v~~~~~~~~~~~~~~~v~i~vet~~-~~~~~~v~~~L~~ 398 (406)
T PRK06382 327 LGQLVRIECNIPDRPGNLYRIANAIASNGGNIYHAEVDNLRKETPPGFQSVTFTVNVRG-QDHLDRILNALRE 398 (406)
T ss_pred cCCEEEEEEEcCCCCCHHHHHHHHHhcCCCcEEEEEEeeccccCCCCcEEEEEEEEeCC-HHHHHHHHHHHHH
Confidence 35567888999999999999999999999999988764 12 23455556666542 1233466666543
No 119
>cd04932 ACT_AKiii-LysC-EC_1 ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in bacteria (Escherichia coli (EC) LysC). Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The E. coli AKIII (LysC) binds two feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=45.98 E-value=1.5e+02 Score=24.16 Aligned_cols=27 Identities=11% Similarity=0.084 Sum_probs=23.4
Q ss_pred ecCCCChHHHHHHHHHhCCceEEEEEE
Q 046178 454 SENVNHPAAKLMSSLRDLDLQLHHASM 480 (515)
Q Consensus 454 C~~r~glL~~Im~aLeeL~LdV~~a~~ 480 (515)
.+..+|.+.+|+++|.+.++.|-....
T Consensus 11 ~~~~~g~~~~IF~~La~~~I~VDmI~~ 37 (75)
T cd04932 11 MLHAQGFLAKVFGILAKHNISVDLITT 37 (75)
T ss_pred CCCCcCHHHHHHHHHHHcCCcEEEEee
Confidence 356789999999999999999998854
No 120
>PRK08178 acetolactate synthase 1 regulatory subunit; Reviewed
Probab=45.45 E-value=1.2e+02 Score=26.55 Aligned_cols=62 Identities=8% Similarity=0.063 Sum_probs=43.9
Q ss_pred eEEEEEEecCCCChHHHHHHHHHhCCceEEEEEEEeeCCEE--EEEEEEEcCCCCCCHHHHHHHHHH
Q 046178 447 DAMIRVQSENVNHPAAKLMSSLRDLDLQLHHASMSCVNDLM--LQDIVVRVPDGLRTEDALRSALLR 511 (515)
Q Consensus 447 e~~I~I~C~~r~glL~~Im~aLeeL~LdV~~a~~S~~~~~v--l~~i~vkv~~~~~s~e~L~~aL~~ 511 (515)
-..|.+.-.+++|.|.+|...|..-|..+.+.++....+.- --++++. +. -..++|.+-|.+
T Consensus 8 ~~tisvlv~N~pGVL~RIaglFsRRgyNIeSLtvg~te~~~iSRmtivv~--~~-~~i~Qi~kQL~K 71 (96)
T PRK08178 8 NVILELTVRNHPGVMSHVCGLFARRAFNVEGILCLPIQDGDKSRIWLLVN--DD-QRLEQMISQIEK 71 (96)
T ss_pred CEEEEEEEECCcCHHHHHHHHHhcCCcCeeeEEEeecCCCCceEEEEEEc--Cc-hHHHHHHHHHhC
Confidence 35688888999999999999999999988888887766533 3344443 22 245555555543
No 121
>PF02120 Flg_hook: Flagellar hook-length control protein FliK; InterPro: IPR021136 This entry represents the C-terminal domain of the flagellar hook-length control protein FliK. This entry also includes YscP of the Yersinia type III secretion system, and equivalent proteins in other pathogenic bacterial type III secretion systems. During flagellar morphogenesis in Salmonella typhimurium and Escherichia coli, flagellar hook-length control protein (FliK) controls the length of the hook by directly measuring the hook length [, ]. It is considered unlikely that FliK functions as a molecular ruler for determining hook length, but that it is more likely to be employing a novel mechanism. The deduced amino acid sequences of FliK proteins from S. typhimurium and E. coli have molecular masses of 41,748 and 39,246 Da, respectively, and are fairly hydrophilic []. Sequence comparison reveals around 50% identity, with greatest conservation in the C-terminal region, with 71% identity in the last 154 amino acids - mutagenesis of this conserved region completely abolishes motility. The central and C-terminal regions are rich in proline and glutamine respectively; it is thought that they may constitute distinct domains [].; PDB: 2RRL_A.
Probab=44.92 E-value=71 Score=26.02 Aligned_cols=49 Identities=20% Similarity=0.319 Sum_probs=36.3
Q ss_pred cceEEEEEeCCeEEEEEEecCCC------ChHHHHHHHHHhCCceEEEEEEEeeC
Q 046178 436 NLEVETKIMGSDAMIRVQSENVN------HPAAKLMSSLRDLDLQLHHASMSCVN 484 (515)
Q Consensus 436 ~~~VeV~i~g~e~~I~I~C~~r~------glL~~Im~aLeeL~LdV~~a~~S~~~ 484 (515)
...|.++..++.+.|+|.+.... .-+..|-++|...|+.+.+.+++..+
T Consensus 26 ~v~v~l~~~~~~l~v~~~~~~~~~~~~L~~~~~~L~~~L~~~G~~~~~~~v~~~~ 80 (85)
T PF02120_consen 26 SVEVKLRLQGGNLSVQFTAENPETKELLRQNLPELKERLQAQGLEVVNLSVSQGS 80 (85)
T ss_dssp -EEEEEEEETTEEEEEEE--SSHHHHHHHHTHHHHHHHHHTTT-EEEEEEEESS-
T ss_pred cEEEEEEEeCCEEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCeEEEEEEECC
Confidence 46788888899999999997763 35678899999999999988876543
No 122
>COG4492 PheB ACT domain-containing protein [General function prediction only]
Probab=44.27 E-value=1.2e+02 Score=28.23 Aligned_cols=65 Identities=5% Similarity=0.013 Sum_probs=49.2
Q ss_pred CeEEEEEEecCCCChHHHHHHHHHhCCceEEEEEEE-eeCCEEEEEEEEEcCCCCCCHHHHHHHHH
Q 046178 446 SDAMIRVQSENVNHPAAKLMSSLRDLDLQLHHASMS-CVNDLMLQDIVVRVPDGLRTEDALRSALL 510 (515)
Q Consensus 446 ~e~~I~I~C~~r~glL~~Im~aLeeL~LdV~~a~~S-~~~~~vl~~i~vkv~~~~~s~e~L~~aL~ 510 (515)
..+.+.+.-..|-|.|+++++++-..++.|++.+=+ ..+++.--++.+....---+.+.|..+|.
T Consensus 71 ri~TL~l~ledr~G~LS~vLd~iA~~~~nvLTI~Q~ipl~g~Anvtlsi~~ssm~~~V~~ii~kl~ 136 (150)
T COG4492 71 RIITLSLSLEDRVGILSDVLDVIAREEINVLTIHQTIPLQGRANVTLSIDTSSMEKDVDKIIEKLR 136 (150)
T ss_pred eEEEEEEEEhhhhhhHHHHHHHHHHhCCcEEEEecccccCceeeEEEEEEchhhhhhHHHHHHHHh
Confidence 456677888999999999999999999999987665 57777777777766533345666665553
No 123
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=44.26 E-value=18 Score=40.08 Aligned_cols=78 Identities=15% Similarity=0.089 Sum_probs=52.9
Q ss_pred eeCCCCC-ccceEeeCCCeeeeeCCCCcCcCcchhHHH--HhhcCCceEEEEec-----CCceEeeccccc---cccChh
Q 046178 139 SFGAGVG-IPGRAQSSGSLVWLTGSHELQFYNCERAKE--AQSHGIETFVCIPT-----SCGVLELGSSDL---IRENWG 207 (515)
Q Consensus 139 sf~~g~G-lpG~a~~sg~~~Wl~~~~~~~~~~~~r~~~--a~~~giqTivciP~-----~~GVvELGSt~~---v~E~~~ 207 (515)
.|..|+| ..|.++.+|.++.+.+....+ ..+.|... +...||..++|||+ .-|||.+.+... -.+|..
T Consensus 65 ~~~~geGP~l~av~~~g~~v~v~~~~~~p-~~~~~~~~~~~~~~gi~S~l~vPL~~~~~~~GvL~l~~~~~~~f~~~~~~ 143 (509)
T PRK05022 65 RFALEEHPRLEAILRAGDPVRFPADSELP-DPYDGLIPGVQESLPVHDCMGLPLFVDGRLIGALTLDALDPGQFDAFSDE 143 (509)
T ss_pred ccCCCcchHHHHHHhcCCeEEEecCCCCC-cccccccccccccCCcceEEEEEEEECCEEEEEEEEeeCCCCcCCHHHHH
Confidence 5888999 679998889999887543322 22333321 23368999999998 457889988653 344567
Q ss_pred HHHHHHHHhc
Q 046178 208 LVHQVKSLFG 217 (515)
Q Consensus 208 lv~~ik~~F~ 217 (515)
++..+-..+.
T Consensus 144 ~l~~~a~~~a 153 (509)
T PRK05022 144 ELRALAALAA 153 (509)
T ss_pred HHHHHHHHHH
Confidence 7777666654
No 124
>cd04892 ACT_AK-like_2 ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). This CD includes the second of two ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). The exception in this group, is the inclusion of the first ACT domain of the bifunctional aspartokinase - homoserine dehydrogenase-like enzyme group (ACT_AKi-HSDH-ThrA-like_1) which includes the monofunctional, threonine-sensitive, aspartokinase found in Methanococcus jannaschii and other related archaeal species. AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. AK is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids (lysine, threonine, methionine, and isoleucine) and the bacterial cell wall component, meso-diaminopimelate. One mechanism for the regulation of this pathway is by the production of several isoenzymes of AK with different repressors an
Probab=43.35 E-value=54 Score=24.12 Aligned_cols=34 Identities=18% Similarity=0.278 Sum_probs=26.7
Q ss_pred EEEEEec---CCCChHHHHHHHHHhCCceEEEEEEEe
Q 046178 449 MIRVQSE---NVNHPAAKLMSSLRDLDLQLHHASMSC 482 (515)
Q Consensus 449 ~I~I~C~---~r~glL~~Im~aLeeL~LdV~~a~~S~ 482 (515)
+|.|.+. ...+.+.+++++|.+.++.+.....+.
T Consensus 2 ~i~i~g~~~~~~~~~~~~i~~~l~~~~i~v~~i~~~~ 38 (65)
T cd04892 2 LVSVVGAGMRGTPGVAARIFSALAEAGINIIMISQGS 38 (65)
T ss_pred EEEEECCCCCCCccHHHHHHHHHHHCCCcEEEEEcCC
Confidence 4666544 567899999999999999998776654
No 125
>cd04916 ACT_AKiii-YclM-BS_2 ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) YclM) and Clostridia species. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. B. subtilis YclM is reported to be a single polypeptide of 50 kD. AKIII from B. subtilis strain 168 is induced by lysine and repressed by threonine and it is synergistically inhibited by lysine and threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=42.67 E-value=1.3e+02 Score=22.66 Aligned_cols=59 Identities=17% Similarity=0.195 Sum_probs=36.1
Q ss_pred EEEEEec---CCCChHHHHHHHHHhCCceEEEEEEEeeCCEEEEEEEEEcCCCCCCHHHHHHHHHHHh
Q 046178 449 MIRVQSE---NVNHPAAKLMSSLRDLDLQLHHASMSCVNDLMLQDIVVRVPDGLRTEDALRSALLRRL 513 (515)
Q Consensus 449 ~I~I~C~---~r~glL~~Im~aLeeL~LdV~~a~~S~~~~~vl~~i~vkv~~~~~s~e~L~~aL~~~l 513 (515)
+|.|.+. ..++.+.+++++|.+.++++.-.+.+..+ .-.+|.+ ++ -+.++..++|++++
T Consensus 3 lisivg~~~~~~~~~~~~i~~~L~~~~i~v~~i~~~~s~--~~isf~v--~~--~d~~~~~~~lh~~~ 64 (66)
T cd04916 3 LIMVVGEGMKNTVGVSARATAALAKAGINIRMINQGSSE--ISIMIGV--HN--EDADKAVKAIYEEF 64 (66)
T ss_pred EEEEEcCCCCCCccHHHHHHHHHHHCCCCEEEEEecCcc--cEEEEEE--eH--HHHHHHHHHHHHHH
Confidence 3455443 46789999999999999999766554322 1122333 32 12345566666665
No 126
>cd04919 ACT_AK-Hom3_2 ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. AK is the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and in fungi, is responsible for the production of threonine, isoleucine and methionine. S. cerevisiae has a single AK, which is regulated by feedback, allosteric inhibition by L-threonine. Recent studies shown that the allosteric transition triggered by binding of threonine to AK involves a large change in the conformation of the native hexameric enzyme that is converted to an inactive one of different shape and substantially smaller hydrodynamic size. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=42.50 E-value=1.3e+02 Score=22.84 Aligned_cols=27 Identities=19% Similarity=0.300 Sum_probs=22.5
Q ss_pred CCCChHHHHHHHHHhCCceEEEEEEEe
Q 046178 456 NVNHPAAKLMSSLRDLDLQLHHASMSC 482 (515)
Q Consensus 456 ~r~glL~~Im~aLeeL~LdV~~a~~S~ 482 (515)
.+++.+.+|+++|.+.++++.-...+.
T Consensus 13 ~~~~~~~~if~~L~~~~I~v~~i~q~~ 39 (66)
T cd04919 13 NMIGIAGRMFTTLADHRINIEMISQGA 39 (66)
T ss_pred CCcCHHHHHHHHHHHCCCCEEEEEecC
Confidence 467899999999999999997665544
No 127
>PF09849 DUF2076: Uncharacterized protein conserved in bacteria (DUF2076); InterPro: IPR018648 This family of hypothetical prokaryotic proteins has no known function but includes putative perimplasmic ligand-binding sensor proteins.
Probab=39.68 E-value=75 Score=32.29 Aligned_cols=50 Identities=24% Similarity=0.440 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHhccCCCCCCCC-hhhHHHHHHHH------------------HHHHHHHHHHHHHHHHHH
Q 046178 352 REKLNHRFYALRAVVPNVSRMD-KASLLSDAVSY------------------IRELKVKIDDLESQLLQR 402 (515)
Q Consensus 352 R~kln~~f~~LrslvP~~~k~d-KasIL~daI~Y------------------Ik~Lq~~v~~Le~~~~~~ 402 (515)
|.-|...|..|+..=.. .|.. =..+|.++|.- ||.|+.||++||.++.+.
T Consensus 6 ~qLI~~lf~RL~~ae~~-prD~eAe~lI~~~~~~qP~A~Y~laQ~vlvQE~AL~~a~~ri~eLe~ql~q~ 74 (247)
T PF09849_consen 6 RQLIDDLFSRLKQAEAQ-PRDPEAEALIAQALARQPDAPYYLAQTVLVQEQALKQAQARIQELEAQLQQA 74 (247)
T ss_pred HHHHHHHHHHHHhccCC-CCCHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 44678888888885544 3322 22445554432 788999999999998553
No 128
>PRK00227 glnD PII uridylyl-transferase; Provisional
Probab=38.26 E-value=47 Score=38.67 Aligned_cols=60 Identities=17% Similarity=0.258 Sum_probs=49.8
Q ss_pred EEEEEEecCCCChHHHHHHHHHhCCceEEEEEEEeeCCEEEEEEEEEcCCCCCCHHHHHHHHHHHhh
Q 046178 448 AMIRVQSENVNHPAAKLMSSLRDLDLQLHHASMSCVNDLMLQDIVVRVPDGLRTEDALRSALLRRLD 514 (515)
Q Consensus 448 ~~I~I~C~~r~glL~~Im~aLeeL~LdV~~a~~S~~~~~vl~~i~vkv~~~~~s~e~L~~aL~~~l~ 514 (515)
.+++|....|.|+|..|+.+|. ||.-+.++|.+..++-+|.+. ++ .+-..|..+|.+++.
T Consensus 632 ~~~e~r~~dr~g~l~~~~~~l~----~~~~~~~~~~g~~~~~~~~~~--~~-~~r~~~~~~~~~~~~ 691 (693)
T PRK00227 632 NILEVRTEDRRGALGALLGVLP----DLLWITASTPGATMIVQAALK--PG-FDRATVERDVTRVLA 691 (693)
T ss_pred cEEEEEeCccccHHHHHHHHhh----hhhhHhhcCCCcceEEEEEec--Cc-ccHHHHHHHHHHHHh
Confidence 6899999999999999999998 999999999999999888887 33 244566777766653
No 129
>cd04912 ACT_AKiii-LysC-EC-like_1 ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in bacteria (Escherichia coli (EC) LysC) and plants, (Zea mays Ask1, Ask2, and Arabidopsis thaliana AK1). Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Like the A. thaliana AK1 (AK1-AT), the E. coli AKIII (LysC) has two bound feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. The lysine-sensitive plant isoenzyme is synergistically inhibited by S-adenosylmethionine. A homolog of this group appears to be the Saccharomyces cerevisiae AK (Hom3) which clusters with this group as well. Members of this CD
Probab=38.03 E-value=1.4e+02 Score=23.95 Aligned_cols=32 Identities=16% Similarity=0.189 Sum_probs=25.0
Q ss_pred EEEEEe---cCCCChHHHHHHHHHhCCceEEEEEE
Q 046178 449 MIRVQS---ENVNHPAAKLMSSLRDLDLQLHHASM 480 (515)
Q Consensus 449 ~I~I~C---~~r~glL~~Im~aLeeL~LdV~~a~~ 480 (515)
+|.|.+ ...++.+.+|+++|.+.++.|.....
T Consensus 3 ~Vsi~g~~l~~~~g~~~~if~~L~~~~I~v~~i~~ 37 (75)
T cd04912 3 LLNIKSNRMLGAHGFLAKVFEIFAKHGLSVDLIST 37 (75)
T ss_pred EEEEEcCCCCCCccHHHHHHHHHHHcCCeEEEEEc
Confidence 455533 45588999999999999999987753
No 130
>PF02344 Myc-LZ: Myc leucine zipper domain; InterPro: IPR003327 This family consists of the leucine zipper dimerisation domain found in both cellular c-Myc proto-oncogenes and viral v-Myc oncogenes. Dimerisation via the leucine zipper motif with other basic helix-loop-helix-leucine zipper (b/HLH/lz) proteins is required for efficient DNA binding []. The Myc-Max dimer is a transactivating complex activating expression of growth related genes promoting cell proliferation. The dimerisation is facilitated via interdigitating leucine residues every 7th position of the alpha helix. Like charge repulsion of adjacent residues in this region preturbs the formation of homodimers with heterodimers being promoted by opposing charge attractions. It has been demonstrated that in transgenic mice the balance between oncogene-induced proliferation and apoptosis in a given tissue can be a critical determinant in the initiation and maintenance of the tumor [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 1NKP_D 1A93_A 2A93_A.
Probab=37.93 E-value=34 Score=23.83 Aligned_cols=18 Identities=44% Similarity=0.717 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHhc
Q 046178 347 AERQRREKLNHRFYALRA 364 (515)
Q Consensus 347 ~ER~RR~kln~~f~~Lrs 364 (515)
.=|+||+.|+.++..||.
T Consensus 12 qLrrr~eqLK~kLeqlrn 29 (32)
T PF02344_consen 12 QLRRRREQLKHKLEQLRN 29 (32)
T ss_dssp HHHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHHHHhc
Confidence 348999999999999985
No 131
>PF13840 ACT_7: ACT domain ; PDB: 3S1T_A 1ZHV_A 3AB4_K 3AB2_O 2DTJ_A 3AAW_A 2RE1_B 3MAH_A 1ZVP_D.
Probab=35.92 E-value=49 Score=26.10 Aligned_cols=35 Identities=29% Similarity=0.283 Sum_probs=28.2
Q ss_pred CCeEEEEEEec----CCCChHHHHHHHHHhCCceEEEEE
Q 046178 445 GSDAMIRVQSE----NVNHPAAKLMSSLRDLDLQLHHAS 479 (515)
Q Consensus 445 g~e~~I~I~C~----~r~glL~~Im~aLeeL~LdV~~a~ 479 (515)
++-..|.|.++ ..+|.+.+|..+|.+.|+.|...+
T Consensus 4 ~~~~~i~v~g~g~~~~~~Gv~a~i~~~La~~~I~i~~is 42 (65)
T PF13840_consen 4 EDWAKISVVGPGLRFDVPGVAAKIFSALAEAGINIFMIS 42 (65)
T ss_dssp SEEEEEEEEEECGTTTSHHHHHHHHHHHHHTTS-ECEEE
T ss_pred CCEEEEEEEccccCCCcccHHHHHHHHHHHCCCCEEEEE
Confidence 34457888887 368999999999999999998877
No 132
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=35.54 E-value=40 Score=38.81 Aligned_cols=77 Identities=18% Similarity=0.211 Sum_probs=48.7
Q ss_pred eCCCCCccceEeeCCCeeeeeCCCCcCcCcchhHHHHh-hcCCceEEEEec-----CCceEeeccccc---cccChhHHH
Q 046178 140 FGAGVGIPGRAQSSGSLVWLTGSHELQFYNCERAKEAQ-SHGIETFVCIPT-----SCGVLELGSSDL---IRENWGLVH 210 (515)
Q Consensus 140 f~~g~GlpG~a~~sg~~~Wl~~~~~~~~~~~~r~~~a~-~~giqTivciP~-----~~GVvELGSt~~---v~E~~~lv~ 210 (515)
.+.+.|+.|+|+.+|+|+=+..........+.+..... ..++++++|||+ .-|||.+++... =.+|..+++
T Consensus 252 ~~~~~~l~g~V~~~~~p~lv~~~~~d~~~~~~~~~~~~~~~~~~s~l~vPL~~~~~v~GvL~l~~~~~~~F~~~dl~lL~ 331 (686)
T PRK15429 252 VDEAGTLTERVFKSKEMLLINLHERDDLAPYERMLFDTWGNQIQTLCLLPLMSGDTMLGVLKLAQCEEKVFTTTNLKLLR 331 (686)
T ss_pred CCcccchHHHHHhcCceEEEECccCcccchhhhhhhhcccccceEEEEEeEEECCEEEEEEEEeeCCCCcCCHHHHHHHH
Confidence 34455899999999999988654432222233332222 247899999997 348999976542 234666666
Q ss_pred HHHHHh
Q 046178 211 QVKSLF 216 (515)
Q Consensus 211 ~ik~~F 216 (515)
.|-...
T Consensus 332 ~iA~~~ 337 (686)
T PRK15429 332 QIAERV 337 (686)
T ss_pred HHHHHH
Confidence 655544
No 133
>PRK11899 prephenate dehydratase; Provisional
Probab=35.24 E-value=2.4e+02 Score=29.10 Aligned_cols=63 Identities=8% Similarity=0.084 Sum_probs=47.4
Q ss_pred EEEEEEecCCCChHHHHHHHHHhCCceEEEEEEEeeCC-EEEEEEEEEcCCCCCCHHHHHHHHHH
Q 046178 448 AMIRVQSENVNHPAAKLMSSLRDLDLQLHHASMSCVND-LMLQDIVVRVPDGLRTEDALRSALLR 511 (515)
Q Consensus 448 ~~I~I~C~~r~glL~~Im~aLeeL~LdV~~a~~S~~~~-~vl~~i~vkv~~~~~s~e~L~~aL~~ 511 (515)
..|-+..++++|.|.+++.+|...|++.....+-...+ ..-|.|.+.+.... ..+.++.||..
T Consensus 195 tsl~~~~~~~pGaL~~vL~~Fa~~gINLtkIeSRP~~~~~~~Y~F~id~eg~~-~d~~v~~aL~~ 258 (279)
T PRK11899 195 TTFVFRVRNIPAALYKALGGFATNGVNMTKLESYMVGGSFTATQFYADIEGHP-EDRNVALALEE 258 (279)
T ss_pred EEEEEEeCCCCChHHHHHHHHHHcCCCeeeEEeeecCCCCceEEEEEEEECCC-CCHHHHHHHHH
Confidence 44445557899999999999999999999999887755 45678888886643 33456666543
No 134
>cd04868 ACT_AK-like ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). This CD includes each of two ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). Typically, AK consists of two ACT domains in a tandem repeat, but the second ACT domain is inserted within the first, resulting in, what is normally the terminal beta strand of ACT2, formed from a region N-terminal of ACT1. AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Aspartokinase is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids (lysine, threonine, methionine, and isoleucine) and the bacterial cell wall component, meso-diaminopimelate. One mechanism for the regulation of this pathway is by the production of several isoenzymes of aspartokinase with different repressors and allosteric inhibitors. Pairs of ACT domains are proposed to specifically bind am
Probab=35.17 E-value=1.3e+02 Score=21.39 Aligned_cols=26 Identities=27% Similarity=0.266 Sum_probs=22.0
Q ss_pred CCChHHHHHHHHHhCCceEEEEEEEe
Q 046178 457 VNHPAAKLMSSLRDLDLQLHHASMSC 482 (515)
Q Consensus 457 r~glL~~Im~aLeeL~LdV~~a~~S~ 482 (515)
.++.+.+++++|.+.++.+.....+.
T Consensus 13 ~~~~~~~i~~~l~~~~i~i~~i~~~~ 38 (60)
T cd04868 13 TPGVAAKIFSALAEAGINVDMISQSE 38 (60)
T ss_pred CCCHHHHHHHHHHHCCCcEEEEEcCC
Confidence 57899999999999999998775554
No 135
>cd04930 ACT_TH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tyrosine hydroxylases (TH). ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tyrosine hydroxylases (TH). TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines (dopamine, noradrenaline and adrenaline), functioning as hormones and neurotransmitters. The enzyme is not regulated by its amino acid substrate, but instead by phosphorylation at several serine residues located N-terminal of the ACT domain, and by feedback inhibition by catecholamines at the active site. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=34.36 E-value=1.4e+02 Score=26.73 Aligned_cols=59 Identities=10% Similarity=0.134 Sum_probs=42.3
Q ss_pred EEEEEEecCCCChHHHHHHHHHhCCceEEEEEEEeeCCE-EEEEEEEEcCCCCCCHHHHHHHH
Q 046178 448 AMIRVQSENVNHPAAKLMSSLRDLDLQLHHASMSCVNDL-MLQDIVVRVPDGLRTEDALRSAL 509 (515)
Q Consensus 448 ~~I~I~C~~r~glL~~Im~aLeeL~LdV~~a~~S~~~~~-vl~~i~vkv~~~~~s~e~L~~aL 509 (515)
+.|-+..++++|.|.+|+..|...|+.+.+..+-...+. .-|.|.+.+... .++++.+|
T Consensus 42 tSlifsl~~~pGsL~~iL~~Fa~~gINLt~IESRP~~~~~~eY~FfIdieg~---~~~~~~aL 101 (115)
T cd04930 42 ATLLFSLKEGFSSLSRILKVFETFEAKIHHLESRPSRKEGGDLEVLVRCEVH---RSDLLQLI 101 (115)
T ss_pred EEEEEEeCCCCcHHHHHHHHHHHCCCCEEEEECCcCCCCCceEEEEEEEEeC---HHHHHHHH
Confidence 344455588999999999999999999999988776443 346677776532 23455554
No 136
>cd04890 ACT_AK-like_1 ACT domains found C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). This CD includes the first of two ACT domains found C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids, lysine, threonine, methionine, and isoleucine. This CD, includes the first ACT domain of the Escherichia coli (EC) isoenzyme, AKIII (LysC) and the Arabidopsis isoenzyme, asparate kinase 1, both enzymes monofunctional and involved in lysine synthesis, as well as the the first ACT domain of Bacillus subtilis (BS) isoenzyme, AKIII (YclM), and of the Saccharomyces cerevisiae AK (Hom3). Also included are the first ACT domains of the Methylomicrobium alcaliphilum AK, the first enzyme of the ectoine biosynthetic pathway. Members of this CD bel
Probab=34.12 E-value=1.4e+02 Score=22.60 Aligned_cols=25 Identities=8% Similarity=0.012 Sum_probs=22.0
Q ss_pred CCCChHHHHHHHHHhCCceEEEEEE
Q 046178 456 NVNHPAAKLMSSLRDLDLQLHHASM 480 (515)
Q Consensus 456 ~r~glL~~Im~aLeeL~LdV~~a~~ 480 (515)
.+.|...+|+++|.+.+++|.....
T Consensus 12 ~~~~~~~~if~~l~~~~i~v~~i~t 36 (62)
T cd04890 12 GEVGFLRKIFEILEKHGISVDLIPT 36 (62)
T ss_pred cccCHHHHHHHHHHHcCCeEEEEec
Confidence 4578999999999999999998854
No 137
>COG0317 SpoT Guanosine polyphosphate pyrophosphohydrolases/synthetases [Signal transduction mechanisms / Transcription]
Probab=32.52 E-value=1.3e+02 Score=35.10 Aligned_cols=60 Identities=5% Similarity=0.069 Sum_probs=46.8
Q ss_pred eEEEEEeCC-----eEEEEEEecCCCChHHHHHHHHHhCCceEEEEEEEee-CCEEEEEEEEEcCC
Q 046178 438 EVETKIMGS-----DAMIRVQSENVNHPAAKLMSSLRDLDLQLHHASMSCV-NDLMLQDIVVRVPD 497 (515)
Q Consensus 438 ~VeV~i~g~-----e~~I~I~C~~r~glL~~Im~aLeeL~LdV~~a~~S~~-~~~vl~~i~vkv~~ 497 (515)
-|.|.-... .+-|+|.-.+++|+|.+|+++|-+.+..|.++++... ++...-.|.++|.+
T Consensus 613 ~i~v~W~~~~~~~f~~~i~v~~~~r~glL~~i~~~i~~~~~ni~~v~~~~~~~~~~~~~~~i~v~n 678 (701)
T COG0317 613 VIDVSWGPEYGQVYPVDIEIRAYDRSGLLRDVSQVLANEKINVLGVNTRSDKDQFATMQFTIEVKN 678 (701)
T ss_pred EEEEEecCCCCcceEEEEEEEEccccchHHHHHHHHHhCCCceEEeeccccCCceEEEEEEEEECc
Confidence 466655432 3568889999999999999999999999999999886 34555567777765
No 138
>KOG4447 consensus Transcription factor TWIST [Transcription]
Probab=31.15 E-value=43 Score=31.62 Aligned_cols=23 Identities=26% Similarity=0.374 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHhccCCCC
Q 046178 347 AERQRREKLNHRFYALRAVVPNV 369 (515)
Q Consensus 347 ~ER~RR~kln~~f~~LrslvP~~ 369 (515)
.||.|-.++++.|.-|++|+|..
T Consensus 29 ~e~~R~~~ls~~s~l~g~l~pgs 51 (173)
T KOG4447|consen 29 KERGRKRRLSDASTLLGKLEPGS 51 (173)
T ss_pred HHHhHHhhhhhhhhhccccCCCC
Confidence 69999999999999999999964
No 139
>smart00338 BRLZ basic region leucin zipper.
Probab=30.87 E-value=2.3e+02 Score=22.23 Aligned_cols=44 Identities=27% Similarity=0.334 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHhccCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 046178 348 ERQRREKLNHRFYALRAVVPNVSRMDKASLLSDAVSYIRELKVKIDDLESQLLQRES 404 (515)
Q Consensus 348 ER~RR~kln~~f~~LrslvP~~~k~dKasIL~daI~YIk~Lq~~v~~Le~~~~~~~s 404 (515)
++++|.++..+-.+-++ =..--.||..|+.+++.|+.+...+..
T Consensus 4 ~k~~rR~~rNR~aA~~~-------------R~rKk~~~~~Le~~~~~L~~en~~L~~ 47 (65)
T smart00338 4 EKRRRRRERNREAARRS-------------RERKKAEIEELERKVEQLEAENERLKK 47 (65)
T ss_pred HHHHHHHHHhHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555555553 122356888888888888888776654
No 140
>PF13492 GAF_3: GAF domain; PDB: 3EEA_A 4DMZ_A 4DN0_A 1VHM_A.
Probab=28.60 E-value=46 Score=27.98 Aligned_cols=63 Identities=21% Similarity=0.172 Sum_probs=38.5
Q ss_pred eeCCCCCccceEeeCCCeeeeeCCCCcCcCcchhHHHHhhcCCceEEEEec-----CCceEeeccccccccChhHHHHH
Q 046178 139 SFGAGVGIPGRAQSSGSLVWLTGSHELQFYNCERAKEAQSHGIETFVCIPT-----SCGVLELGSSDLIRENWGLVHQV 212 (515)
Q Consensus 139 sf~~g~GlpG~a~~sg~~~Wl~~~~~~~~~~~~r~~~a~~~giqTivciP~-----~~GVvELGSt~~v~E~~~lv~~i 212 (515)
.++.+.++.++++.++++ +...... ... ..+.+.++|||+ .-|||.+++...-.-+..-++.+
T Consensus 49 ~l~~~~~~~~~~~~~~~~-~~~~~~~--~~~--------~~~~~s~~~vPl~~~~~~~Gvl~~~~~~~~~~~~~d~~~l 116 (129)
T PF13492_consen 49 SLPEDDPLIGRALETGEP-VSVPDID--ERD--------FLGIRSLLVVPLRSRDRVIGVLCLDSREPEEFSDEDLQLL 116 (129)
T ss_dssp CEETTSHHHHHHHHHTS--EEESTCC--C-T--------TTTTCEEEEEEEEETTEEEEEEEEEECTTCG-SHHHHHHH
T ss_pred cCCCCccHHHHHHhhCCe-EEecccc--ccc--------CCCCCEEEEEEEeECCEEEEEEEEEECCCCCCCHHHHHHH
Confidence 345777888888888886 3332211 111 157789999998 45899998887554344433333
No 141
>PRK08526 threonine dehydratase; Provisional
Probab=28.47 E-value=2.3e+02 Score=30.67 Aligned_cols=64 Identities=9% Similarity=0.123 Sum_probs=46.2
Q ss_pred CCeEEEEEEecCCCChHHHHHHHHHhCCceEEEEEEEeeCCE-----EEEEEEEEcCCCCCCHHHHHHHH
Q 046178 445 GSDAMIRVQSENVNHPAAKLMSSLRDLDLQLHHASMSCVNDL-----MLQDIVVRVPDGLRTEDALRSAL 509 (515)
Q Consensus 445 g~e~~I~I~C~~r~glL~~Im~aLeeL~LdV~~a~~S~~~~~-----vl~~i~vkv~~~~~s~e~L~~aL 509 (515)
|..+.+.+.-+.++|-|.++++.+-+.+.+|.+......... ..-.+.+++.+. -..++|.++|
T Consensus 324 ~r~~~~~~~~~d~pg~l~~~~~~~~~~~~~i~~~~~~r~~~~~~~~~~~~~~~~e~~~~-~~~~~~~~~l 392 (403)
T PRK08526 324 YRKMKLHVTLVDKPGALMGLTDILKEANANIVKIDYDRFSTKLDYGDAMISITLETKGK-EHQEEIRKIL 392 (403)
T ss_pred CCEEEEEEEcCCCCCHHHHHHHHHccCCCcEEEEEEEeccCCCCCccEEEEEEEEeCCH-HHHHHHHHHH
Confidence 667889999999999999999999999999999888664433 333455555432 1334555555
No 142
>cd04921 ACT_AKi-HSDH-ThrA-like_1 ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). This CD includes the first of two ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). The ACT domains are positioned between the N-terminal catalytic domain of AK and the C-terminal HSDH domain found in bacteria (Escherichia coli (EC) ThrA) and higher plants (Zea mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. HSDH is the first committed reaction in the branch of the pathway that leads to Thr and Met. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pat
Probab=27.00 E-value=1.7e+02 Score=23.22 Aligned_cols=33 Identities=21% Similarity=0.296 Sum_probs=25.4
Q ss_pred EEEEEe---cCCCChHHHHHHHHHhCCceEEEEEEE
Q 046178 449 MIRVQS---ENVNHPAAKLMSSLRDLDLQLHHASMS 481 (515)
Q Consensus 449 ~I~I~C---~~r~glL~~Im~aLeeL~LdV~~a~~S 481 (515)
+|.|.. ....+.+.+++++|.+.++.+.-.+.+
T Consensus 3 ~I~vvg~~~~~~~~~~~~i~~~L~~~~I~v~~i~~~ 38 (80)
T cd04921 3 LINIEGTGMVGVPGIAARIFSALARAGINVILISQA 38 (80)
T ss_pred EEEEEcCCCCCCccHHHHHHHHHHHCCCcEEEEEec
Confidence 455532 346789999999999999999877655
No 143
>COG4747 ACT domain-containing protein [General function prediction only]
Probab=26.03 E-value=2e+02 Score=26.26 Aligned_cols=41 Identities=17% Similarity=0.212 Sum_probs=35.7
Q ss_pred EEEEEecCCCChHHHHHHHHHhCCceEEEEEEEeeCCEEEE
Q 046178 449 MIRVQSENVNHPAAKLMSSLRDLDLQLHHASMSCVNDLMLQ 489 (515)
Q Consensus 449 ~I~I~C~~r~glL~~Im~aLeeL~LdV~~a~~S~~~~~vl~ 489 (515)
.|.|.-.+++|.|..+..+|.+.|+.+...++.-.+++-+.
T Consensus 5 QISvFlENk~GRL~~~~~~L~eagINiRA~tiAdt~dFGIi 45 (142)
T COG4747 5 QISVFLENKPGRLASVANKLKEAGINIRAFTIADTGDFGII 45 (142)
T ss_pred EEEEEecCCcchHHHHHHHHHHcCCceEEEEeccccCcceE
Confidence 47788899999999999999999999999988887776443
No 144
>PF07009 DUF1312: Protein of unknown function (DUF1312); InterPro: IPR010739 This family consists of several bacterial proteins of around 120 residues in length. The function of this family is unknown.; PDB: 4ESN_B 1NPP_B 1M1G_D 1NPR_A 1M1H_A 2KPP_A 3LD7_C.
Probab=25.60 E-value=74 Score=28.07 Aligned_cols=46 Identities=17% Similarity=0.183 Sum_probs=30.8
Q ss_pred CCCCccceEeeCCCeeeeeCCCCcCcCcchhHHHHhhcCCceEEEEec
Q 046178 142 AGVGIPGRAQSSGSLVWLTGSHELQFYNCERAKEAQSHGIETFVCIPT 189 (515)
Q Consensus 142 ~g~GlpG~a~~sg~~~Wl~~~~~~~~~~~~r~~~a~~~giqTivciP~ 189 (515)
.|.+..-..-..+.-+|+..++ ++.+.|.+.---... =|++||+|-
T Consensus 55 ~~~~g~~~i~i~~g~vrv~~s~-CpdkiCv~~G~I~~~-G~~IVCLPn 100 (113)
T PF07009_consen 55 DGDGGYNTIEIKDGKVRVIESD-CPDKICVKTGWISRP-GQSIVCLPN 100 (113)
T ss_dssp ETTTCEEEEEEETTEEEEEEES-TSS-HHHHS-SB-ST-T-EEEETTT
T ss_pred ecCCcEEEEEEECCEEEEEECC-CCCcchhhCCCcCCC-CCEEEEcCC
Confidence 4556667788888899999887 677888766322223 389999984
No 145
>PRK15385 magnesium transport protein MgtC; Provisional
Probab=23.61 E-value=3.9e+02 Score=26.89 Aligned_cols=62 Identities=10% Similarity=0.154 Sum_probs=40.4
Q ss_pred eEEEEEEecCCC--ChHHHHHHHHHhCCceEEEEEEEeeC--CE--EEEEEEEEcCCCCCCHHHHHHHH
Q 046178 447 DAMIRVQSENVN--HPAAKLMSSLRDLDLQLHHASMSCVN--DL--MLQDIVVRVPDGLRTEDALRSAL 509 (515)
Q Consensus 447 e~~I~I~C~~r~--glL~~Im~aLeeL~LdV~~a~~S~~~--~~--vl~~i~vkv~~~~~s~e~L~~aL 509 (515)
...++|.|...+ +....+++.|++.++.+.+.++...+ +. +-.++.++..++ ...|++...|
T Consensus 142 ~~~~~v~~~~~~~~~vr~~L~~~l~~~~~~~~~l~~~~~~~~~~~ei~a~l~~~~~~~-~~le~iv~~L 209 (225)
T PRK15385 142 RYILKVTCNKEDESAVRQWLLNIVKEAAICLQGLGSVPAQEQGYKEIRAELVGHADYR-KTRELIISRI 209 (225)
T ss_pred EEEEEEEEcCcchhHHHHHHHHHHHhCCCceEEeEeeecCCCCeEEEEEEEEecCCch-hhHHHHHHHH
Confidence 456788898765 45788999999999999999986543 32 333444443322 3455555444
No 146
>KOG3582 consensus Mlx interactors and related transcription factors [Transcription]
Probab=23.36 E-value=28 Score=39.96 Aligned_cols=57 Identities=19% Similarity=0.317 Sum_probs=45.3
Q ss_pred CCccchHHHHHHHHHHHHHHHHHhccCCCC-----CCCChhhHHHHHHHHHHHHHHHHHHHHHHH
Q 046178 340 TPLNHVEAERQRREKLNHRFYALRAVVPNV-----SRMDKASLLSDAVSYIRELKVKIDDLESQL 399 (515)
Q Consensus 340 ~~~~H~~~ER~RR~kln~~f~~LrslvP~~-----~k~dKasIL~daI~YIk~Lq~~v~~Le~~~ 399 (515)
..+.|+.++||||-.+.++|..|-+|.|.+ .+..++|||. +.|+.+++.-+.+.+..
T Consensus 787 v~a~sih~lrr~~~~~~dq~~sL~alrp~v~~~~~ql~S~tS~L~---dp~~~~eq~ska~~e~~ 848 (856)
T KOG3582|consen 787 VSAGSIHALRRTRLNWLDQFCSLPALRPQVLLNLRQLLSSTSILT---DPIKQPEQASKAVTEKI 848 (856)
T ss_pred eecchHHHHHHHHHHHhhccccHHHHHHHHHhhHHHhhhhhhccc---CcccchHHHHHHHHhhh
Confidence 456899999999999999999999999953 5678889998 66777776655555443
No 147
>cd04918 ACT_AK1-AT_2 ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1). This CD includes the second of two ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1), which can be synergistically inhibited by S-adenosylmethionine (SAM). This isoenzyme is found in higher plants, Arabidopsis thaliana (AT) and Zea mays, and also in Chlorophyta. In its inactive state, Arabidopsis AK1 binds the effectors lysine and SAM (two molecules each) at the interface of two ACT1 domain subunits. The second ACT domain (ACT2), this CD, does not interact with an effector. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=22.12 E-value=2.9e+02 Score=21.38 Aligned_cols=29 Identities=7% Similarity=-0.012 Sum_probs=23.1
Q ss_pred CCChHHHHHHHHHhCCceEEEEEEEeeCC
Q 046178 457 VNHPAAKLMSSLRDLDLQLHHASMSCVND 485 (515)
Q Consensus 457 r~glL~~Im~aLeeL~LdV~~a~~S~~~~ 485 (515)
.++.+.+++++|.+.++.|.-.+.++.+-
T Consensus 13 ~~~~~~~i~~aL~~~~I~v~~i~~g~s~~ 41 (65)
T cd04918 13 SSLILERAFHVLYTKGVNVQMISQGASKV 41 (65)
T ss_pred CccHHHHHHHHHHHCCCCEEEEEecCccc
Confidence 46799999999999999997666555443
No 148
>cd04937 ACT_AKi-DapG-BS_2 ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI. This CD includes the C-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) strain 168), Clostridia, and Actinobacteria bacterial species. In B. subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive AK isoenzymes. AKI activity is invariant during the exponential and stationary phases of growth and is not altered by addition of amino acids to the growth medium. The role of this isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulation. The BS AKI is tetrameric consisting of two alpha and two beta subunits; th
Probab=21.95 E-value=1.8e+02 Score=22.34 Aligned_cols=21 Identities=19% Similarity=0.279 Sum_probs=19.4
Q ss_pred CCCChHHHHHHHHHhCCceEE
Q 046178 456 NVNHPAAKLMSSLRDLDLQLH 476 (515)
Q Consensus 456 ~r~glL~~Im~aLeeL~LdV~ 476 (515)
..+|++.+++++|.+.++.|.
T Consensus 13 ~~~gi~~~if~aL~~~~I~v~ 33 (64)
T cd04937 13 GVPGVMAKIVGALSKEGIEIL 33 (64)
T ss_pred CCcCHHHHHHHHHHHCCCCEE
Confidence 468999999999999999996
No 149
>PRK11898 prephenate dehydratase; Provisional
Probab=21.91 E-value=3.6e+02 Score=27.72 Aligned_cols=62 Identities=11% Similarity=-0.019 Sum_probs=44.5
Q ss_pred EEEEEEecC-CCChHHHHHHHHHhCCceEEEEEEEeeCCE-EEEEEEEEcCCCCCCHHHHHHHHH
Q 046178 448 AMIRVQSEN-VNHPAAKLMSSLRDLDLQLHHASMSCVNDL-MLQDIVVRVPDGLRTEDALRSALL 510 (515)
Q Consensus 448 ~~I~I~C~~-r~glL~~Im~aLeeL~LdV~~a~~S~~~~~-vl~~i~vkv~~~~~s~e~L~~aL~ 510 (515)
..|-+..++ ++|.|.+++..|.+.|+++++..+-...+. .-|.|-+.+... .+.+.++++|.
T Consensus 197 tslif~l~~~~pGsL~~~L~~F~~~~INLt~IeSRP~~~~~~~y~F~vd~eg~-~~~~~~~~al~ 260 (283)
T PRK11898 197 TSLVLTLPNNLPGALYKALSEFAWRGINLTRIESRPTKTGLGTYFFFIDVEGH-IDDVLVAEALK 260 (283)
T ss_pred EEEEEEeCCCCccHHHHHHHHHHHCCCCeeeEecccCCCCCccEEEEEEEEcc-CCCHHHHHHHH
Confidence 445556655 499999999999999999999998876553 346777777543 34445666654
No 150
>PF14992 TMCO5: TMCO5 family
Probab=20.53 E-value=1.3e+02 Score=31.11 Aligned_cols=26 Identities=27% Similarity=0.344 Sum_probs=22.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Q 046178 376 SLLSDAVSYIRELKVKIDDLESQLLQ 401 (515)
Q Consensus 376 sIL~daI~YIk~Lq~~v~~Le~~~~~ 401 (515)
-+..|++.||++||++++.+|.+++.
T Consensus 144 ~l~eDq~~~i~klkE~L~rmE~ekE~ 169 (280)
T PF14992_consen 144 QLCEDQANEIKKLKEKLRRMEEEKEM 169 (280)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34899999999999999999998863
No 151
>cd04924 ACT_AK-Arch_2 ACT domains of a monofunctional aspartokinase found mostly in Archaea species (ACT_AK-Arch_2). Included in this CD is the second of two ACT domains of a monofunctional aspartokinase found mostly in Archaea species (ACT_AK-Arch_2). The first or N-terminal ACT domain of these proteins cluster with the ThrA-like ACT 1 domains (ACT_AKi-HSDH-ThrA-like_1) which includes the threonine-sensitive archaeal Methanococcus jannaschii aspartokinase ACT 1 domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=20.34 E-value=3.7e+02 Score=19.99 Aligned_cols=59 Identities=14% Similarity=0.093 Sum_probs=35.7
Q ss_pred EEEEEec---CCCChHHHHHHHHHhCCceEEEEEEEeeCCEEEEEEEEEcCCCCCCHHHHHHHHHHHh
Q 046178 449 MIRVQSE---NVNHPAAKLMSSLRDLDLQLHHASMSCVNDLMLQDIVVRVPDGLRTEDALRSALLRRL 513 (515)
Q Consensus 449 ~I~I~C~---~r~glL~~Im~aLeeL~LdV~~a~~S~~~~~vl~~i~vkv~~~~~s~e~L~~aL~~~l 513 (515)
+|.|.+. ..++.+.+++++|.+.++.+.-.+.+..+ .-..|.+.-. +.+++.+.|++.+
T Consensus 3 ~isivg~~~~~~~~~~~~i~~~L~~~~I~v~~i~q~~s~--~~isf~i~~~----~~~~~~~~Lh~~~ 64 (66)
T cd04924 3 VVAVVGSGMRGTPGVAGRVFGALGKAGINVIMISQGSSE--YNISFVVAED----DGWAAVKAVHDEF 64 (66)
T ss_pred EEEEECCCCCCCccHHHHHHHHHHHCCCCEEEEEecCcc--ceEEEEEeHH----HHHHHHHHHHHHh
Confidence 4444443 45789999999999999999766544322 2122444322 2345566666654
Done!