Query 046178
Match_columns 515
No_of_seqs 288 out of 1321
Neff 5.9
Searched_HMMs 29240
Date Mon Mar 25 16:26:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046178.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/046178hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1am9_A Srebp-1A, protein (ster 99.6 2.2E-15 7.4E-20 125.1 7.0 65 340-404 6-71 (82)
2 1nkp_B MAX protein, MYC proto- 99.5 3E-14 1E-18 118.4 6.5 65 340-404 2-68 (83)
3 1hlo_A Protein (transcription 99.5 3.7E-14 1.3E-18 117.1 6.2 65 340-404 12-78 (80)
4 1nkp_A C-MYC, MYC proto-oncoge 99.5 6.4E-14 2.2E-18 117.7 6.9 65 340-404 6-73 (88)
5 4h10_B Circadian locomoter out 99.4 1.3E-13 4.4E-18 111.1 5.4 57 340-396 8-65 (71)
6 1an4_A Protein (upstream stimu 99.4 5.5E-14 1.9E-18 111.5 3.1 53 340-392 5-63 (65)
7 1nlw_A MAD protein, MAX dimeri 99.4 4E-13 1.4E-17 110.9 7.9 64 341-404 2-68 (80)
8 4ati_A MITF, microphthalmia-as 99.4 4.2E-13 1.4E-17 118.6 7.7 60 340-399 27-90 (118)
9 1a0a_A BHLH, protein (phosphat 99.4 6.5E-14 2.2E-18 110.6 1.1 53 340-392 2-61 (63)
10 4h10_A ARYL hydrocarbon recept 99.3 3.7E-13 1.3E-17 109.2 2.3 51 340-390 9-63 (73)
11 3u5v_A Protein MAX, transcript 99.3 8.8E-13 3E-17 107.8 3.8 59 338-396 3-65 (76)
12 2ql2_B Neurod1, neurogenic dif 99.0 2.4E-10 8.1E-15 89.3 4.7 53 341-393 3-58 (60)
13 1mdy_A Protein (MYOD BHLH doma 99.0 1.9E-10 6.4E-15 92.0 3.8 53 340-392 12-66 (68)
14 4f3l_A Mclock, circadian locom 98.7 6.5E-09 2.2E-13 107.3 5.5 52 340-391 12-64 (361)
15 4f3l_B BMAL1B; BHLH, PAS, circ 98.6 3E-08 1E-12 103.4 4.4 52 340-391 13-68 (387)
16 2lfh_A DNA-binding protein inh 98.5 2E-08 7E-13 79.6 0.5 45 346-390 20-67 (68)
17 4ath_A MITF, microphthalmia-as 98.2 2.3E-06 7.9E-11 70.4 6.9 49 352-400 4-56 (83)
18 4aya_A DNA-binding protein inh 97.8 2.2E-05 7.5E-10 66.5 6.0 47 347-393 32-81 (97)
19 1zpv_A ACT domain protein; str 97.0 0.0072 2.4E-07 49.2 11.1 64 447-511 5-68 (91)
20 1u8s_A Glycine cleavage system 95.7 0.038 1.3E-06 51.4 9.1 64 447-512 6-69 (192)
21 1f5m_A GAF; CGMP binding, sign 95.2 0.0071 2.4E-07 56.2 2.3 72 139-216 93-173 (180)
22 2nyi_A Unknown protein; protei 95.1 0.11 3.7E-06 48.8 10.3 62 447-510 5-70 (195)
23 2nyi_A Unknown protein; protei 94.6 0.094 3.2E-06 49.2 8.2 64 447-512 93-162 (195)
24 2ko1_A CTR148A, GTP pyrophosph 94.4 0.12 4.1E-06 41.1 7.3 50 447-496 5-54 (88)
25 3dba_A CONE CGMP-specific 3',5 94.2 0.018 6.3E-07 52.4 2.4 77 139-217 82-168 (180)
26 1u8s_A Glycine cleavage system 94.1 0.37 1.3E-05 44.6 11.2 65 447-512 93-165 (192)
27 1vhm_A Protein YEBR; structura 93.1 0.034 1.2E-06 52.6 2.1 73 139-217 88-168 (195)
28 2vjw_A GAF-B, GAF family prote 93.0 0.051 1.7E-06 48.3 3.0 48 139-199 55-107 (149)
29 2e4s_A CAMP and CAMP-inhibited 92.9 0.076 2.6E-06 47.0 4.1 77 138-216 84-170 (189)
30 3e0y_A Conserved domain protei 92.6 0.054 1.8E-06 47.3 2.7 76 139-216 77-160 (181)
31 3o1l_A Formyltetrahydrofolate 92.2 0.8 2.7E-05 46.2 10.9 64 447-510 22-87 (302)
32 3mmh_A FRMSR, methionine-R-sul 92.2 0.037 1.3E-06 50.9 1.0 72 139-216 77-156 (167)
33 3obi_A Formyltetrahydrofolate 92.1 0.7 2.4E-05 46.2 10.4 66 446-511 5-72 (288)
34 3p96_A Phosphoserine phosphata 91.7 0.31 1.1E-05 50.3 7.5 66 446-511 11-76 (415)
35 3hcy_A Putative two-component 91.4 0.28 9.4E-06 42.0 5.8 59 142-201 52-115 (151)
36 3n0v_A Formyltetrahydrofolate 91.3 0.94 3.2E-05 45.2 10.2 65 446-511 7-73 (286)
37 3trc_A Phosphoenolpyruvate-pro 90.8 0.097 3.3E-06 45.3 2.2 75 139-215 72-154 (171)
38 2w3g_A DOSS, two component sen 90.5 0.14 4.7E-06 43.3 2.9 74 139-215 56-138 (153)
39 3k2n_A Sigma-54-dependent tran 90.5 0.43 1.5E-05 41.6 6.2 75 139-214 72-158 (177)
40 3ksh_A Putative uncharacterize 90.4 0.11 3.8E-06 47.6 2.3 72 139-216 76-155 (160)
41 3rfb_A Putative uncharacterize 90.2 0.15 5.1E-06 47.3 3.0 74 139-218 77-158 (171)
42 3lou_A Formyltetrahydrofolate 89.8 1.4 4.8E-05 44.1 9.9 66 446-511 9-78 (292)
43 3ci6_A Phosphoenolpyruvate-pro 89.3 0.15 5.2E-06 43.4 2.2 75 139-215 74-156 (171)
44 2qyb_A Membrane protein, putat 88.8 0.41 1.4E-05 42.1 4.7 75 141-217 69-153 (181)
45 2zmf_A CAMP and CAMP-inhibited 88.7 0.12 4E-06 45.6 1.0 76 139-215 85-169 (189)
46 3oov_A Methyl-accepting chemot 87.0 0.18 6.2E-06 43.4 1.2 73 143-215 72-155 (169)
47 1ykd_A Adenylate cyclase; GAF 86.6 0.39 1.3E-05 48.5 3.5 63 138-200 261-331 (398)
48 3ibj_A CGMP-dependent 3',5'-cy 84.1 0.51 1.7E-05 52.2 3.2 77 139-217 245-332 (691)
49 3nrb_A Formyltetrahydrofolate 83.1 4.1 0.00014 40.6 9.1 63 446-510 6-70 (287)
50 2f1f_A Acetolactate synthase i 83.0 1.4 5E-05 40.4 5.3 62 448-511 4-67 (164)
51 1mc0_A 3',5'-cyclic nucleotide 82.6 0.44 1.5E-05 47.2 1.8 75 139-216 75-160 (368)
52 1mc0_A 3',5'-cyclic nucleotide 82.0 1.1 3.7E-05 44.4 4.4 77 138-216 244-331 (368)
53 1y7p_A Hypothetical protein AF 80.3 4.1 0.00014 39.2 7.5 60 447-510 4-68 (223)
54 2jhe_A Transcription regulator 79.1 3.5 0.00012 36.4 6.4 35 449-483 2-36 (190)
55 2pc6_A Probable acetolactate s 78.0 1.8 6.1E-05 39.9 4.1 62 448-511 5-68 (165)
56 1ykd_A Adenylate cyclase; GAF 75.7 0.98 3.4E-05 45.5 1.8 61 139-199 75-143 (398)
57 3p01_A Two-component response 74.5 0.93 3.2E-05 40.4 1.2 71 143-215 94-172 (184)
58 2fgc_A Acetolactate synthase, 74.4 5.4 0.00018 37.6 6.4 62 448-511 30-93 (193)
59 2k2n_A Sensor protein, SYB-CPH 72.7 5.1 0.00017 35.2 5.6 70 144-214 78-159 (172)
60 3o5y_A Sensor protein; GAF dom 71.4 4 0.00014 36.7 4.6 76 139-216 54-137 (165)
61 2lb5_A Sensor histidine kinase 70.1 5.6 0.00019 35.9 5.4 75 142-217 106-192 (208)
62 3ibj_A CGMP-dependent 3',5'-cy 68.6 1.4 4.8E-05 48.6 1.1 70 139-212 76-156 (691)
63 3bjc_A CGMP-specific 3',5'-cyc 66.5 1.2 4.1E-05 50.8 0.0 78 138-217 224-314 (878)
64 3bjc_A CGMP-specific 3',5'-cyc 62.7 1.6 5.3E-05 49.9 0.0 77 138-216 406-502 (878)
65 2f06_A Conserved hypothetical 60.5 48 0.0016 28.5 9.4 56 450-511 75-130 (144)
66 2wt7_A Proto-oncogene protein 56.2 29 0.001 26.4 6.3 44 348-404 1-44 (63)
67 2oqq_A Transcription factor HY 45.8 22 0.00076 25.2 3.6 23 383-405 3-25 (42)
68 2f06_A Conserved hypothetical 42.8 1.1E+02 0.0039 26.0 8.9 56 449-510 8-63 (144)
69 1zme_C Proline utilization tra 36.6 30 0.001 26.0 3.6 23 382-404 43-65 (70)
70 2l5g_A GPS2 protein, G protein 31.8 68 0.0023 22.2 4.2 31 372-402 4-34 (38)
71 3he4_B Synzip5; heterodimeric 31.0 77 0.0026 22.1 4.4 25 378-402 5-29 (46)
72 2re1_A Aspartokinase, alpha an 30.8 2E+02 0.0068 25.4 8.7 39 441-479 97-138 (167)
73 2er8_A Regulatory protein Leu3 28.7 31 0.0011 26.2 2.5 21 383-403 49-69 (72)
74 2qmw_A PDT, prephenate dehydra 28.3 1.2E+02 0.004 29.8 7.1 63 447-511 186-252 (267)
75 2re1_A Aspartokinase, alpha an 25.0 1.4E+02 0.0049 26.3 6.6 41 441-481 19-60 (167)
76 3a98_B Engulfment and cell mot 25.0 42 0.0014 31.6 3.0 32 26-64 25-66 (203)
77 1dh3_A Transcription factor CR 24.5 70 0.0024 23.8 3.6 22 383-404 22-43 (55)
78 2dtj_A Aspartokinase; protein- 23.9 2.1E+02 0.0071 25.6 7.5 41 441-481 9-50 (178)
79 1uii_A Geminin; human, DNA rep 23.3 1.7E+02 0.0057 23.8 5.8 25 378-402 41-65 (83)
80 2qmx_A Prephenate dehydratase; 22.0 2.4E+02 0.0083 27.7 8.1 63 448-511 201-264 (283)
81 3ld7_A LIN0431 protein; DUF131 21.9 36 0.0012 28.6 1.7 49 139-189 34-82 (101)
82 1gd2_E Transcription factor PA 21.6 81 0.0028 24.7 3.6 21 382-402 28-48 (70)
No 1
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=99.58 E-value=2.2e-15 Score=125.15 Aligned_cols=65 Identities=23% Similarity=0.416 Sum_probs=60.7
Q ss_pred CCccchHHHHHHHHHHHHHHHHHhccCCCC-CCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 046178 340 TPLNHVEAERQRREKLNHRFYALRAVVPNV-SRMDKASLLSDAVSYIRELKVKIDDLESQLLQRES 404 (515)
Q Consensus 340 ~~~~H~~~ER~RR~kln~~f~~LrslvP~~-~k~dKasIL~daI~YIk~Lq~~v~~Le~~~~~~~s 404 (515)
.+.+|+.+||+||++||++|..|+++||.. .|+||++||.+||+||++|+.+++.|+.+...+..
T Consensus 6 rr~~H~~~ErrRR~~in~~f~~L~~lvP~~~~k~~Ka~IL~~Ai~YI~~Lq~~~~~L~~e~~~L~~ 71 (82)
T 1am9_A 6 KRTAHNAIEKRYRSSINDKIIELKDLVVGTEAKLNKSAVLRKAIDYIRFLQHSNQKLKQENLSLRT 71 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356899999999999999999999999986 89999999999999999999999999999977654
No 2
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=99.48 E-value=3e-14 Score=118.37 Aligned_cols=65 Identities=25% Similarity=0.425 Sum_probs=59.9
Q ss_pred CCccchHHHHHHHHHHHHHHHHHhccCCC--CCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 046178 340 TPLNHVEAERQRREKLNHRFYALRAVVPN--VSRMDKASLLSDAVSYIRELKVKIDDLESQLLQRES 404 (515)
Q Consensus 340 ~~~~H~~~ER~RR~kln~~f~~LrslvP~--~~k~dKasIL~daI~YIk~Lq~~v~~Le~~~~~~~s 404 (515)
.+.+|+..||+||.+||+.|..|+++||. ..|++|++||.+||+||++|+.++++|+.+++++..
T Consensus 2 rR~~hn~~Er~RR~~in~~f~~Lr~lvP~~~~~k~sK~~iL~~Ai~YI~~L~~~~~~l~~e~~~L~~ 68 (83)
T 1nkp_B 2 KRAHHNALERKRRDHIKDSFHSLRDSVPSLQGEKASRAQILDKATEYIQYMRRKNHTHQQDIDDLKR 68 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTSGGGTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHhhhHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45789999999999999999999999997 489999999999999999999999999998876654
No 3
>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1
Probab=99.47 E-value=3.7e-14 Score=117.06 Aligned_cols=65 Identities=25% Similarity=0.451 Sum_probs=60.3
Q ss_pred CCccchHHHHHHHHHHHHHHHHHhccCCCC--CCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 046178 340 TPLNHVEAERQRREKLNHRFYALRAVVPNV--SRMDKASLLSDAVSYIRELKVKIDDLESQLLQRES 404 (515)
Q Consensus 340 ~~~~H~~~ER~RR~kln~~f~~LrslvP~~--~k~dKasIL~daI~YIk~Lq~~v~~Le~~~~~~~s 404 (515)
.+.+|+..||+||.+||+.|..|+++||.. .|++|++||..||+||++|++++++|+.+++++..
T Consensus 12 ~R~~hn~~Er~RR~~in~~f~~Lr~lvP~~~~~k~sK~~iL~~Ai~YI~~L~~~~~~L~~e~~~L~~ 78 (80)
T 1hlo_A 12 KRAHHNALERKRRDHIKDSFHSLRDSVPSLQGEKASRAQILDKATEYIQYMRRKNHTHQQDIDDLKR 78 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSGGGTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHH
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHCcCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 567899999999999999999999999974 79999999999999999999999999999977653
No 4
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=99.46 E-value=6.4e-14 Score=117.73 Aligned_cols=65 Identities=29% Similarity=0.430 Sum_probs=58.7
Q ss_pred CCccchHHHHHHHHHHHHHHHHHhccCCCC---CCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 046178 340 TPLNHVEAERQRREKLNHRFYALRAVVPNV---SRMDKASLLSDAVSYIRELKVKIDDLESQLLQRES 404 (515)
Q Consensus 340 ~~~~H~~~ER~RR~kln~~f~~LrslvP~~---~k~dKasIL~daI~YIk~Lq~~v~~Le~~~~~~~s 404 (515)
.+.+|+..||+||.+||+.|..||++||.. .|++|++||.+||+||++|+.+.+.++.+++.+..
T Consensus 6 ~R~~Hn~~ER~RR~~ln~~f~~Lr~~vP~~~~~~K~sK~~iL~~A~~YI~~L~~~~~~l~~~~~~L~~ 73 (88)
T 1nkp_A 6 KRRTHNVLERQRRNELKRSFFALRDQIPELENNEKAPKVVILKKATAYILSVQAEEQKLISEEDLLRK 73 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTCGGGTTCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467899999999999999999999999975 69999999999999999999999998887765543
No 5
>4h10_B Circadian locomoter output cycles protein kaput; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens}
Probab=99.42 E-value=1.3e-13 Score=111.06 Aligned_cols=57 Identities=25% Similarity=0.476 Sum_probs=51.9
Q ss_pred CCccchHHHHHHHHHHHHHHHHHhccCCC-CCCCChhhHHHHHHHHHHHHHHHHHHHH
Q 046178 340 TPLNHVEAERQRREKLNHRFYALRAVVPN-VSRMDKASLLSDAVSYIRELKVKIDDLE 396 (515)
Q Consensus 340 ~~~~H~~~ER~RR~kln~~f~~LrslvP~-~~k~dKasIL~daI~YIk~Lq~~v~~Le 396 (515)
.+.+|+++||+||++||++|..|++|||. ..|+||++||..||+||++||.++.=|+
T Consensus 8 kR~~Hn~iErrRRd~IN~~i~eL~~LvP~~~~K~dK~sIL~~aI~yik~Lq~~~~~~~ 65 (71)
T 4h10_B 8 KRVSRNKSEKKRRDQFNVLIKELGSMLPGNARKMDKSTVLQKSIDFLRKHKEITAWLE 65 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTSSSCCSCCCHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HhhhhhHHHhhHHHHHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHHHHHHhhhHHH
Confidence 45689999999999999999999999996 4699999999999999999999876554
No 6
>1an4_A Protein (upstream stimulatory factor); protein-DNA complex, double helix, overhanging base, transcription/DNA complex; HET: DNA; 2.90A {Homo sapiens} SCOP: a.38.1.1
Probab=99.41 E-value=5.5e-14 Score=111.53 Aligned_cols=53 Identities=36% Similarity=0.572 Sum_probs=48.8
Q ss_pred CCccchHHHHHHHHHHHHHHHHHhccCCCCC------CCChhhHHHHHHHHHHHHHHHH
Q 046178 340 TPLNHVEAERQRREKLNHRFYALRAVVPNVS------RMDKASLLSDAVSYIRELKVKI 392 (515)
Q Consensus 340 ~~~~H~~~ER~RR~kln~~f~~LrslvP~~~------k~dKasIL~daI~YIk~Lq~~v 392 (515)
.+.+|+.+||+||++||+.|..|++|||... |++|++||.+||+||++|+++.
T Consensus 5 rr~~H~~~Er~RR~~in~~~~~L~~lvP~~~~~~~~~k~~Ka~IL~~ai~YI~~Lq~~~ 63 (65)
T 1an4_A 5 RRAQHNEVERRRRDKINNWIVQLSKIIPDSSMESTKSGQSKGGILSKASDYIQELRQSN 63 (65)
T ss_dssp CCCSSHHHHHHHHHHHHHHHHHHHHHSCCCCCCSSTTCCCTTTTTTTTHHHHHHHHTTT
T ss_pred HHHhhchHHHHHHHHHHHHHHHHHHHCcCcccccccCCCCHHHHHHHHHHHHHHHHHHh
Confidence 5678999999999999999999999999754 7899999999999999999764
No 7
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=99.41 E-value=4e-13 Score=110.92 Aligned_cols=64 Identities=30% Similarity=0.293 Sum_probs=58.6
Q ss_pred CccchHHHHHHHHHHHHHHHHHhccCCCC---CCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 046178 341 PLNHVEAERQRREKLNHRFYALRAVVPNV---SRMDKASLLSDAVSYIRELKVKIDDLESQLLQRES 404 (515)
Q Consensus 341 ~~~H~~~ER~RR~kln~~f~~LrslvP~~---~k~dKasIL~daI~YIk~Lq~~v~~Le~~~~~~~s 404 (515)
+..|+..||+||..||+.|..||++||.. .|.+|++||.+|++||++|+.+.++|+.+++.+..
T Consensus 2 R~~HN~~ER~RR~~lk~~f~~Lr~~vP~~~~~~k~sk~~iL~kA~~yI~~L~~~~~~l~~e~~~L~~ 68 (80)
T 1nlw_A 2 RSTHNEMEKNRRAHLRLSLEKLKGLVPLGPDSSRHTTLSLLTKAKLHIKKLEDSDRKAVHQIDQLQR 68 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSSCCCSSSCCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46799999999999999999999999964 68899999999999999999999999999876654
No 8
>4ati_A MITF, microphthalmia-associated transcription factor; DNA-binding protein-DNA complex, melanoma; 2.60A {Mus musculus} PDB: 4atk_A
Probab=99.39 E-value=4.2e-13 Score=118.63 Aligned_cols=60 Identities=30% Similarity=0.449 Sum_probs=52.5
Q ss_pred CCccchHHHHHHHHHHHHHHHHHhccCCCC----CCCChhhHHHHHHHHHHHHHHHHHHHHHHH
Q 046178 340 TPLNHVEAERQRREKLNHRFYALRAVVPNV----SRMDKASLLSDAVSYIRELKVKIDDLESQL 399 (515)
Q Consensus 340 ~~~~H~~~ER~RR~kln~~f~~LrslvP~~----~k~dKasIL~daI~YIk~Lq~~v~~Le~~~ 399 (515)
.+.+|+.+||+||++||++|..|++|||.. .|++|++||.+||+||++||.+++.|+...
T Consensus 27 kr~~Hn~~ERrRR~~In~~~~~L~~lvP~~~~~~~k~~Ka~IL~~aieYIk~Lq~~~~~l~~~~ 90 (118)
T 4ati_A 27 KKDNHNLIERRRRFNINDRIKELGTLIPKSNDPDMRWNKGTILKASVDYIRKLQREQQRAKDLE 90 (118)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHHHSCCC----CCCCHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHhhccCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456799999999999999999999999975 478899999999999999999999998754
No 9
>1a0a_A BHLH, protein (phosphate system positive regulatory protein PHO4); transcription factor, basic helix loop helix; HET: DNA; 2.80A {Saccharomyces cerevisiae} SCOP: a.38.1.1
Probab=99.37 E-value=6.5e-14 Score=110.57 Aligned_cols=53 Identities=28% Similarity=0.406 Sum_probs=48.1
Q ss_pred CCccchHHHHHHHHHHHHHHHHHhccCCC-------CCCCChhhHHHHHHHHHHHHHHHH
Q 046178 340 TPLNHVEAERQRREKLNHRFYALRAVVPN-------VSRMDKASLLSDAVSYIRELKVKI 392 (515)
Q Consensus 340 ~~~~H~~~ER~RR~kln~~f~~LrslvP~-------~~k~dKasIL~daI~YIk~Lq~~v 392 (515)
.+.+|..+||+||++||..|..|++|||+ ..|.+||+||+.||+||++||+++
T Consensus 2 kr~~H~~aEr~RR~rIn~~~~~L~~LlP~~~~~~~~~~k~sKa~iL~~Ai~YIk~Lq~~~ 61 (63)
T 1a0a_A 2 KRESHKHAEQARRNRLAVALHELASLIPAEWKQQNVSAAPSKATTVEAACRYIRHLQQNG 61 (63)
T ss_dssp CTTGGGGGTHHHHHHHHHHHHHHHHTSCHHHHTSSCCCCSCTTHHHHHHHHHHHHHHTCS
T ss_pred cccchhHHHHHHHHHHHHHHHHHHHHCCCcccccccCCcccHHHHHHHHHHHHHHHHHHh
Confidence 35689999999999999999999999994 367789999999999999999765
No 10
>4h10_A ARYL hydrocarbon receptor nuclear translocator-LI 1; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens}
Probab=99.32 E-value=3.7e-13 Score=109.19 Aligned_cols=51 Identities=29% Similarity=0.479 Sum_probs=47.0
Q ss_pred CCccchHHHHHHHHHHHHHHHHHhccCCCC----CCCChhhHHHHHHHHHHHHHH
Q 046178 340 TPLNHVEAERQRREKLNHRFYALRAVVPNV----SRMDKASLLSDAVSYIRELKV 390 (515)
Q Consensus 340 ~~~~H~~~ER~RR~kln~~f~~LrslvP~~----~k~dKasIL~daI~YIk~Lq~ 390 (515)
.+.+|+.+||+||++||+.|..|++|||.. +|+|||+||..||+||+.|+.
T Consensus 9 rR~~H~~~ERrRR~rIN~~l~eL~~LvP~~~~~~~KldKasIL~~tV~ylk~l~~ 63 (73)
T 4h10_A 9 AREAHSQIEKRRRDKMNSFIDELASLVPTCNAMSRKLDKLTVLRMAVQHMKTLRG 63 (73)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHTCSSCCCHHHHHHHHHHHHHHHSC
T ss_pred HHHhcchHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHhc
Confidence 356899999999999999999999999964 799999999999999999874
No 11
>3u5v_A Protein MAX, transcription factor E2-alpha chimer; basic helix-loop-helix (BHLH); 1.70A {Mus musculus} PDB: 2ql2_A*
Probab=99.30 E-value=8.8e-13 Score=107.78 Aligned_cols=59 Identities=24% Similarity=0.351 Sum_probs=48.5
Q ss_pred CCCCccchHHHHHHHHHHHHHHHHHhccCCC---CCCC-ChhhHHHHHHHHHHHHHHHHHHHH
Q 046178 338 RETPLNHVEAERQRREKLNHRFYALRAVVPN---VSRM-DKASLLSDAVSYIRELKVKIDDLE 396 (515)
Q Consensus 338 ~e~~~~H~~~ER~RR~kln~~f~~LrslvP~---~~k~-dKasIL~daI~YIk~Lq~~v~~Le 396 (515)
.+.+.+|+..||+||.+||+.|..||.+||. ..|. +|++||..||+||+.|++++++++
T Consensus 3 ~~rR~~hN~~ER~Rr~~IN~~f~~Lr~~vP~~~~~~K~~sK~~IL~~AieYI~~Lq~~l~e~~ 65 (76)
T 3u5v_A 3 ADKRAHHNALERKRRRDINEAFRELGRMCQMHLKSDKAQTKLLILQQAVQVILGLEQQVRERN 65 (76)
T ss_dssp ------CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred hhHHhhchHHHhhhHHHHHHHHHHHHHHcCCCCCccccccHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3567889999999999999999999999994 3455 688999999999999999998875
No 12
>2ql2_B Neurod1, neurogenic differentiation factor 1; basic-helix-loop-helix; HET: DNA; 2.50A {Mus musculus}
Probab=99.00 E-value=2.4e-10 Score=89.27 Aligned_cols=53 Identities=30% Similarity=0.361 Sum_probs=48.2
Q ss_pred CccchHHHHHHHHHHHHHHHHHhccCCCC---CCCChhhHHHHHHHHHHHHHHHHH
Q 046178 341 PLNHVEAERQRREKLNHRFYALRAVVPNV---SRMDKASLLSDAVSYIRELKVKID 393 (515)
Q Consensus 341 ~~~H~~~ER~RR~kln~~f~~LrslvP~~---~k~dKasIL~daI~YIk~Lq~~v~ 393 (515)
+..|+..||+|+..||+.|..||.+||.. .|.+|..||..||+||..|++.++
T Consensus 3 R~~~N~rER~R~~~iN~af~~LR~~lP~~~~~~klSKi~tLr~Ai~YI~~L~~~L~ 58 (60)
T 2ql2_B 3 RMKANARERNRMHGLNAALDNLRKVVPCYSKTQKLSKIETLRLAKNYIWALSEILR 58 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTSSSCCSSSCCCHHHHHHHHHHHHHHHHHHTT
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHccCCCCcCcCCHHHHHHHHHHHHHHHHHHHh
Confidence 56799999999999999999999999964 589999999999999999998653
No 13
>1mdy_A Protein (MYOD BHLH domain); protein-DNA complex, transcription/DNA complex; HET: DNA; 2.80A {Mus musculus} SCOP: a.38.1.1 PDB: 1mdy_B*
Probab=98.99 E-value=1.9e-10 Score=92.05 Aligned_cols=53 Identities=26% Similarity=0.414 Sum_probs=49.0
Q ss_pred CCccchHHHHHHHHHHHHHHHHHhccCCC--CCCCChhhHHHHHHHHHHHHHHHH
Q 046178 340 TPLNHVEAERQRREKLNHRFYALRAVVPN--VSRMDKASLLSDAVSYIRELKVKI 392 (515)
Q Consensus 340 ~~~~H~~~ER~RR~kln~~f~~LrslvP~--~~k~dKasIL~daI~YIk~Lq~~v 392 (515)
.+..|+..||+|+..||+.|..||.+||. ..|++|+.||..||+||..|++.+
T Consensus 12 rR~~aN~rER~R~~~iN~af~~LR~~iP~~~~~KlSKi~tLr~Ai~YI~~L~~~L 66 (68)
T 1mdy_A 12 RRKAATMRERRRLSKVNEAFETLKRSTSSNPNQRLPKVEILRNAIRYIEGLQALL 66 (68)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTSCSCTTSCCCHHHHHHHHHHHHHHHHHTT
T ss_pred hhhHhhHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 57789999999999999999999999996 378999999999999999999755
No 14
>4f3l_A Mclock, circadian locomoter output cycles protein kaput; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=98.73 E-value=6.5e-09 Score=107.29 Aligned_cols=52 Identities=25% Similarity=0.547 Sum_probs=42.7
Q ss_pred CCccchHHHHHHHHHHHHHHHHHhccCC-CCCCCChhhHHHHHHHHHHHHHHH
Q 046178 340 TPLNHVEAERQRREKLNHRFYALRAVVP-NVSRMDKASLLSDAVSYIRELKVK 391 (515)
Q Consensus 340 ~~~~H~~~ER~RR~kln~~f~~LrslvP-~~~k~dKasIL~daI~YIk~Lq~~ 391 (515)
.+.+|+.+||+||++||..|..|++||| +..|+||++||..||+||+.|+..
T Consensus 12 ~~~~~~~~e~~rr~~~n~~~~~l~~~~p~~~~~~dk~~il~~~~~~~~~~~~~ 64 (361)
T 4f3l_A 12 KRVSRNKSEKKRRDQFNVLIKELGSMLPGNARKMDKSTVLQKSIDFLRKHKET 64 (361)
T ss_dssp -------CHHHHHHHHHHHHHHHHHTCCSSSCCCCHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHHHHHHHhh
Confidence 4557999999999999999999999999 678999999999999999999754
No 15
>4f3l_B BMAL1B; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=98.55 E-value=3e-08 Score=103.43 Aligned_cols=52 Identities=29% Similarity=0.444 Sum_probs=48.1
Q ss_pred CCccchHHHHHHHHHHHHHHHHHhccCC----CCCCCChhhHHHHHHHHHHHHHHH
Q 046178 340 TPLNHVEAERQRREKLNHRFYALRAVVP----NVSRMDKASLLSDAVSYIRELKVK 391 (515)
Q Consensus 340 ~~~~H~~~ER~RR~kln~~f~~LrslvP----~~~k~dKasIL~daI~YIk~Lq~~ 391 (515)
.+.+|+.+||+||++||+.|..|++||| ...|+||++||..||+||+.|+..
T Consensus 13 ~~~~~~~~ek~rR~~~n~~~~~L~~l~p~~~~~~~k~dk~~il~~~~~~l~~~~~~ 68 (387)
T 4f3l_B 13 AREAHSQIEKRRRDKMNSFIDELASLVPTCNAMSRKLDKLTVLRMAVQHMKTLRGA 68 (387)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHCSSCCCHHHHHHHHHHHHHHHHCC
T ss_pred hcccccchhhcchHHHHHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHHHhhcc
Confidence 3568999999999999999999999999 679999999999999999999843
No 16
>2lfh_A DNA-binding protein inhibitor ID-3; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=98.48 E-value=2e-08 Score=79.62 Aligned_cols=45 Identities=29% Similarity=0.578 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHHHHHHhccCCCC---CCCChhhHHHHHHHHHHHHHH
Q 046178 346 EAERQRREKLNHRFYALRAVVPNV---SRMDKASLLSDAVSYIRELKV 390 (515)
Q Consensus 346 ~~ER~RR~kln~~f~~LrslvP~~---~k~dKasIL~daI~YIk~Lq~ 390 (515)
+.||+|+..||+.|..||.+||.. .|++|..+|.-||+||..||.
T Consensus 20 erER~Rm~~lN~aF~~LR~~VP~~p~~kKLSKiEtLr~Ai~YI~~Lq~ 67 (68)
T 2lfh_A 20 EEPLSLLDDMNHCYSRLRELVPGVPRGTQLSQVEILQRVIDYILDLQV 67 (68)
T ss_dssp CCCSCSSSHHHHHHHHHHHHCCCCCTTCCCCHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCCCccHHHHHHHHHHHHHHHHc
Confidence 459999999999999999999964 689999999999999999984
No 17
>4ath_A MITF, microphthalmia-associated transcription factor; DNA binding protein, melanoma; HET: MSE; 1.95A {Mus musculus}
Probab=98.22 E-value=2.3e-06 Score=70.44 Aligned_cols=49 Identities=27% Similarity=0.434 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHhccCCCC----CCCChhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 046178 352 REKLNHRFYALRAVVPNV----SRMDKASLLSDAVSYIRELKVKIDDLESQLL 400 (515)
Q Consensus 352 R~kln~~f~~LrslvP~~----~k~dKasIL~daI~YIk~Lq~~v~~Le~~~~ 400 (515)
|..||+++..|..|||.. .|..|++||..|++||++||+.++.+..+..
T Consensus 4 R~nIN~~I~EL~~LiP~~~~~~~k~nKg~IL~ksvdYI~~Lq~e~~r~~e~e~ 56 (83)
T 4ath_A 4 RFNINDRIKELGTLIPKSNDPDMRWNKGTILKASVDYIRKLQREQQRAKDLEN 56 (83)
T ss_dssp HHHHHHHHHHHHHHSCCCCCTTCCCSHHHHHHHHHHHHHHHHHTHHHHHHHHH
T ss_pred hhhHHHhhhhhhccCCCCCCcccCcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 789999999999999953 5789999999999999999998887776553
No 18
>4aya_A DNA-binding protein inhibitor ID-2; cell cycle; 2.10A {Homo sapiens}
Probab=97.84 E-value=2.2e-05 Score=66.52 Aligned_cols=47 Identities=21% Similarity=0.454 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHHHHHhccCCC---CCCCChhhHHHHHHHHHHHHHHHHH
Q 046178 347 AERQRREKLNHRFYALRAVVPN---VSRMDKASLLSDAVSYIRELKVKID 393 (515)
Q Consensus 347 ~ER~RR~kln~~f~~LrslvP~---~~k~dKasIL~daI~YIk~Lq~~v~ 393 (515)
.||.|-..||+.|..||.+||. ..|.+|..+|.-||+||..|+.-++
T Consensus 32 ~~r~Rm~~lN~AF~~LR~~vP~~p~~kKLSKIETLRlAi~YI~~Lq~~L~ 81 (97)
T 4aya_A 32 DPMSLLYNMNDCYSKLKELVPSIPQNKKVSKMEILQHVIDYILDLQIALD 81 (97)
T ss_dssp CHHHHHHHHHHHHHHHHHHCTTSCSSSCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHCCCCCCCCcccHHHHHHHHHHHHHHHHHHHh
Confidence 3788999999999999999996 3689999999999999999997554
No 19
>1zpv_A ACT domain protein; structural genomics, PSI, protein structure INIT midwest center for structural genomics, MCSG, unknown funct; 1.90A {Streptococcus pneumoniae} SCOP: d.58.18.7
Probab=96.99 E-value=0.0072 Score=49.19 Aligned_cols=64 Identities=17% Similarity=0.225 Sum_probs=56.1
Q ss_pred eEEEEEEecCCCChHHHHHHHHHhCCceEEEEEEEeeCCEEEEEEEEEcCCCCCCHHHHHHHHHH
Q 046178 447 DAMIRVQSENVNHPAAKLMSSLRDLDLQLHHASMSCVNDLMLQDIVVRVPDGLRTEDALRSALLR 511 (515)
Q Consensus 447 e~~I~I~C~~r~glL~~Im~aLeeL~LdV~~a~~S~~~~~vl~~i~vkv~~~~~s~e~L~~aL~~ 511 (515)
.+.|.|.|++++|++.+|..+|.+.|.+|.+.+....++.+.-.+.+.+++ ....++|.++|.+
T Consensus 5 ~~~l~v~~~DrpGila~vt~~la~~~~NI~~i~~~~~~~~~~~~i~v~~~~-~~~l~~l~~~L~~ 68 (91)
T 1zpv_A 5 KAIITVVGKDKSGIVAGVSGKIAELGLNIDDISQTVLDEYFTMMAVVSSDE-KQDFTYLRNEFEA 68 (91)
T ss_dssp EEEEEEEESCCTTHHHHHHHHHHHTTCEEEEEEEEEETTEEEEEEEEEESS-CCCHHHHHHHHHH
T ss_pred eEEEEEEECCCCCHHHHHHHHHHHcCCCEEEEEeEEEcCEEEEEEEEEeCC-CCCHHHHHHHHHH
Confidence 467999999999999999999999999999999998888888888888876 4578888888865
No 20
>1u8s_A Glycine cleavage system transcriptional repressor, putative; structural genomics, protein structure initiative (PSI), domain swapping; 2.45A {Vibrio cholerae} SCOP: d.58.18.5 d.58.18.5
Probab=95.69 E-value=0.038 Score=51.41 Aligned_cols=64 Identities=3% Similarity=0.011 Sum_probs=53.5
Q ss_pred eEEEEEEecCCCChHHHHHHHHHhCCceEEEEEEEeeCCEEEEEEEEEcCCCCCCHHHHHHHHHHH
Q 046178 447 DAMIRVQSENVNHPAAKLMSSLRDLDLQLHHASMSCVNDLMLQDIVVRVPDGLRTEDALRSALLRR 512 (515)
Q Consensus 447 e~~I~I~C~~r~glL~~Im~aLeeL~LdV~~a~~S~~~~~vl~~i~vkv~~~~~s~e~L~~aL~~~ 512 (515)
.+.|.|.|++++|++.+|..+|.+.|++|+.++..+..+.++-.+.+..+. ...++|+++|...
T Consensus 6 ~~~itv~~~DrpGiva~vt~~La~~g~NI~d~~~~~~~~~f~~~~~v~~~~--~~~~~l~~~L~~~ 69 (192)
T 1u8s_A 6 HLVITAVGTDRPGICNEVVRLVTQAGCNIIDSRIAMFGKEFTLLMLISGSP--SNITRVETTLPLL 69 (192)
T ss_dssp EEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTEEEEEEEEEECH--HHHHHHHHHHHHH
T ss_pred EEEEEEEcCCCCcHHHHHHHHHHHCCCCEEeeeeeecCCceEEEEEEecCC--CCHHHHHHHHHHH
Confidence 467999999999999999999999999999999999888776677777553 2567777777653
No 21
>1f5m_A GAF; CGMP binding, signaling protein; 1.90A {Saccharomyces cerevisiae} SCOP: d.110.2.1 PDB: 3ko6_A*
Probab=95.21 E-value=0.0071 Score=56.17 Aligned_cols=72 Identities=15% Similarity=0.195 Sum_probs=55.1
Q ss_pred eeCCCCCccceEeeCCCeeeeeCCCCcCcCcchhHHHHhhcCCceEEEEecCC------ceEeeccccc---cccChhHH
Q 046178 139 SFGAGVGIPGRAQSSGSLVWLTGSHELQFYNCERAKEAQSHGIETFVCIPTSC------GVLELGSSDL---IRENWGLV 209 (515)
Q Consensus 139 sf~~g~GlpG~a~~sg~~~Wl~~~~~~~~~~~~r~~~a~~~giqTivciP~~~------GVvELGSt~~---v~E~~~lv 209 (515)
.|+.|+|+.|+|+.+|+++.+.+...-+.+ .+...+++.++|||+.. |||++.+.+. -.+|..++
T Consensus 93 ~i~~g~Gi~G~aa~~g~~v~v~Dv~~dp~~------~~~~~~~~S~l~vPi~~~~g~viGVL~l~s~~~~~F~~~d~~~L 166 (180)
T 1f5m_A 93 MIQFGKGVCGTAASTKETQIVPDVNKYPGH------IACDGETKSEIVVPIISNDGKTLGVIDIDCLDYEGFDHVDKEFL 166 (180)
T ss_dssp EEETTSHHHHHHHHHTSCEEESCGGGSTTC------CCSSTTCCEEEEEEEECTTSCEEEEEEEEESSTTCCCHHHHHHH
T ss_pred eecCCCcchhhhhhcCCEEEeCCcccCccc------cccCcccceEEEEEEEcCCCeEEEEEEeccCCCCCcCHHHHHHH
Confidence 689999999999999999999987653322 24457899999999965 9999998754 23466677
Q ss_pred HHHHHHh
Q 046178 210 HQVKSLF 216 (515)
Q Consensus 210 ~~ik~~F 216 (515)
+.+-...
T Consensus 167 ~~la~~~ 173 (180)
T 1f5m_A 167 EKLAKLI 173 (180)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6665544
No 22
>2nyi_A Unknown protein; protein structure initiative, PSI, center for eukaryotic structural genomics, CESG, structural genomics; 1.80A {Galdieria sulphuraria}
Probab=95.14 E-value=0.11 Score=48.78 Aligned_cols=62 Identities=16% Similarity=0.254 Sum_probs=50.1
Q ss_pred eEEEEEEecCCCChHHHHHHHHHhCCceEEEEEEEeeCCEEEEEEEEEcCCCCCC----HHHHHHHHH
Q 046178 447 DAMIRVQSENVNHPAAKLMSSLRDLDLQLHHASMSCVNDLMLQDIVVRVPDGLRT----EDALRSALL 510 (515)
Q Consensus 447 e~~I~I~C~~r~glL~~Im~aLeeL~LdV~~a~~S~~~~~vl~~i~vkv~~~~~s----~e~L~~aL~ 510 (515)
.+.|.|.|+.++|++.+|..+|.++|++|+.+++.+..+.++-.+.+..+.. + .++|+++|.
T Consensus 5 ~~~ltv~~~DrpGiva~vs~~La~~g~NI~da~q~~~~~~f~m~~~v~~~~~--~~~~~~~~l~~~L~ 70 (195)
T 2nyi_A 5 SFVVSVAGSDRVGIVHDFSWALKNISANVESSRMACLGGDFAMIVLVSLNAK--DGKLIQSALESALP 70 (195)
T ss_dssp EEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTEEEEEEEEEESSS--SSHHHHHHHHHHST
T ss_pred EEEEEEEeCCCCcHHHHHHHHHHHCCCCEEEEEeEEECCeEEEEEEEEecCc--cchhHHHHHHHHHH
Confidence 4679999999999999999999999999999999988886655777765532 3 456666554
No 23
>2nyi_A Unknown protein; protein structure initiative, PSI, center for eukaryotic structural genomics, CESG, structural genomics; 1.80A {Galdieria sulphuraria}
Probab=94.57 E-value=0.094 Score=49.19 Aligned_cols=64 Identities=13% Similarity=0.072 Sum_probs=52.1
Q ss_pred eEEEEEEecCCCChHHHHHHHHHhCCceEEEEEEEeeC------CEEEEEEEEEcCCCCCCHHHHHHHHHHH
Q 046178 447 DAMIRVQSENVNHPAAKLMSSLRDLDLQLHHASMSCVN------DLMLQDIVVRVPDGLRTEDALRSALLRR 512 (515)
Q Consensus 447 e~~I~I~C~~r~glL~~Im~aLeeL~LdV~~a~~S~~~------~~vl~~i~vkv~~~~~s~e~L~~aL~~~ 512 (515)
...|.|.|+.++|++.+|-.+|-++|++|..++..+.. ++++-.+.+.+++. .+ ++|+++|...
T Consensus 93 ~~iltv~g~DrpGiva~Vt~~La~~g~nI~~~~~~t~~~~~~~~~~F~m~~~~~~~~~-~~-~~l~~~l~~~ 162 (195)
T 2nyi_A 93 EYELYVEGPDSEGIVEAVTAVLAKKGANIVELETETLPAPFAGFTLFRMGSRVAFPFP-LY-QEVVTALSRV 162 (195)
T ss_dssp EEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEEECSSTTCEEEEEEEEEEEEGG-GH-HHHHHHHHHH
T ss_pred EEEEEEEeCCCcCHHHHHHHHHHHcCCCEEEceeeecccccCCCCeEEEEEEEEcCCC-cc-HHHHHHHHHH
Confidence 46799999999999999999999999999999999876 56655566665543 35 8888888753
No 24
>2ko1_A CTR148A, GTP pyrophosphokinase; homodimer, alpha+beta, transferase, structural genomics, PSI-2, protein structure initiative; NMR {Chlorobaculum tepidum} PDB: 3ibw_A
Probab=94.35 E-value=0.12 Score=41.15 Aligned_cols=50 Identities=14% Similarity=0.258 Sum_probs=41.5
Q ss_pred eEEEEEEecCCCChHHHHHHHHHhCCceEEEEEEEeeCCEEEEEEEEEcC
Q 046178 447 DAMIRVQSENVNHPAAKLMSSLRDLDLQLHHASMSCVNDLMLQDIVVRVP 496 (515)
Q Consensus 447 e~~I~I~C~~r~glL~~Im~aLeeL~LdV~~a~~S~~~~~vl~~i~vkv~ 496 (515)
.+.|+|.+++++|.|.+|..+|.+.++++.++.....++.....+.+.+.
T Consensus 5 ~~~l~v~~~Dr~G~L~~I~~~la~~~inI~~i~~~~~~~~~~~~i~v~~~ 54 (88)
T 2ko1_A 5 LAGIRIVGEDKNGMTNQITGVISKFDTNIRTIVLNAKDGIFTCNLMIFVK 54 (88)
T ss_dssp EEEEEEEEECCTTHHHHHHHHHTTSSSCEEEEEEEECSSEEEEEEEEEES
T ss_pred EEEEEEEEECCCcHHHHHHHHHHHCCCCeEEEEEEEcCCEEEEEEEEEEC
Confidence 35789999999999999999999999999999998877744445556554
No 25
>3dba_A CONE CGMP-specific 3',5'-cyclic phosphodiesterase alpha'; 3', GAF domain, cyclic nucleotide phosphodiesterase hydrolase, lipoprotein, membrane; HET: 35G; 2.57A {Gallus gallus}
Probab=94.22 E-value=0.018 Score=52.36 Aligned_cols=77 Identities=10% Similarity=0.119 Sum_probs=55.3
Q ss_pred eeCCCCCccceEeeCCCeeeeeCCCCcCcCcchhHHHH-hhcCCceEEEEec-----CCceEeeccccc----cccChhH
Q 046178 139 SFGAGVGIPGRAQSSGSLVWLTGSHELQFYNCERAKEA-QSHGIETFVCIPT-----SCGVLELGSSDL----IRENWGL 208 (515)
Q Consensus 139 sf~~g~GlpG~a~~sg~~~Wl~~~~~~~~~~~~r~~~a-~~~giqTivciP~-----~~GVvELGSt~~----v~E~~~l 208 (515)
.++.|+|+.|+++.+|+|+.+.+....+ .|.+.... ....++.++|||+ .-|||+|.+... -.+|..+
T Consensus 82 ~~~~~~gi~g~v~~tg~~v~i~d~~~d~--~f~~~~~~~~~~~~~S~L~vPl~~~~~viGVL~l~n~~~~~~Ft~~d~~l 159 (180)
T 3dba_A 82 VFPLDIGIAGWVAHTKKFFNIPDVKKNN--HFSDYLDKKTGYTTVNMMAIPITQGKEVLAVVMALNKLNASEFSKEDEEV 159 (180)
T ss_dssp EECTTSSHHHHHHHHTCCEEESCGGGCT--TCCCHHHHHHCCCCCCEEEEEEEETTEEEEEEEEEEESSSSSCCHHHHHH
T ss_pred eeeCCCCHHHHHHHhCCEEEecCCCCCc--ccChhhccccCccccEEEEEEeccCCEEEEEEEEEeCCCCCCCCHHHHHH
Confidence 5789999999999999999999865532 23332221 2246799999998 238999987653 2457777
Q ss_pred HHHHHHHhc
Q 046178 209 VHQVKSLFG 217 (515)
Q Consensus 209 v~~ik~~F~ 217 (515)
++.+-+...
T Consensus 160 L~~lA~~aa 168 (180)
T 3dba_A 160 FKKYLNFIS 168 (180)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 777776654
No 26
>1u8s_A Glycine cleavage system transcriptional repressor, putative; structural genomics, protein structure initiative (PSI), domain swapping; 2.45A {Vibrio cholerae} SCOP: d.58.18.5 d.58.18.5
Probab=94.11 E-value=0.37 Score=44.58 Aligned_cols=65 Identities=12% Similarity=0.065 Sum_probs=52.8
Q ss_pred eEEEEEEecCCCChHHHHHHHHHhCCceEEEEEEEeeC--------CEEEEEEEEEcCCCCCCHHHHHHHHHHH
Q 046178 447 DAMIRVQSENVNHPAAKLMSSLRDLDLQLHHASMSCVN--------DLMLQDIVVRVPDGLRTEDALRSALLRR 512 (515)
Q Consensus 447 e~~I~I~C~~r~glL~~Im~aLeeL~LdV~~a~~S~~~--------~~vl~~i~vkv~~~~~s~e~L~~aL~~~ 512 (515)
...|.|.|+.++|++.+|.++|.+.+++|..+...+.. +.++-.+.+.+++ ..+.++|+++|...
T Consensus 93 ~~~l~v~~~D~~Gil~~v~~~l~~~~~nI~~~~~~t~~~~~~~~~~~~F~~~~~~~~~~-~~~~~~l~~~l~~~ 165 (192)
T 1u8s_A 93 TVEVYVESDDKLGLTEKFTQFFAQRQIGMASLSAQTISKDKLHSEQNQFHIAISARVDS-GCNLMQLQEEFDAL 165 (192)
T ss_dssp EEEEEEEESCCTTHHHHHHHHHHHTTCCEEEEEEEEEC--------CEEEEEEEEEECT-TSCHHHHHHHHHHH
T ss_pred eEEEEEEeCCCccHHHHHHHHHHHcCCcHHHhhhhcccCCccCCCCCEEEEEEEEeCCC-CCCHHHHHHHHHHH
Confidence 46789999999999999999999999999999988764 3555556666654 45788999988753
No 27
>1vhm_A Protein YEBR; structural genomics, unknown function; HET: MES; 2.10A {Escherichia coli} SCOP: d.110.2.1
Probab=93.11 E-value=0.034 Score=52.56 Aligned_cols=73 Identities=18% Similarity=0.217 Sum_probs=55.2
Q ss_pred eeCCCCCccceEeeCCCeeeeeCCCCcCcCcchhHHHHhhcCCceEEEEecC-----CceEeeccccc---cccChhHHH
Q 046178 139 SFGAGVGIPGRAQSSGSLVWLTGSHELQFYNCERAKEAQSHGIETFVCIPTS-----CGVLELGSSDL---IRENWGLVH 210 (515)
Q Consensus 139 sf~~g~GlpG~a~~sg~~~Wl~~~~~~~~~~~~r~~~a~~~giqTivciP~~-----~GVvELGSt~~---v~E~~~lv~ 210 (515)
.|+.|+|+.|+|+.+|+++.+.+....+.+ .+...+.+.++|||+. -|||++.+.+. -.+|..+++
T Consensus 88 ~i~~GeGi~G~aa~tg~~i~V~Dv~~~p~~------~~~~~~~~S~l~VPI~~~g~viGVL~i~s~~~~~F~e~d~~~L~ 161 (195)
T 1vhm_A 88 RIPVGRGVCGTAVARNQVQRIEDVHVFDGH------IACDAASNSEIVLPLVVKNQIIGVLDIDSTVFGRFTDEDEQGLR 161 (195)
T ss_dssp EEETTSHHHHHHHHHTSCEEESCTTTCTTC------CCSCCCCSEEEEEEEEETTEEEEEEEEEESSTTCCCHHHHHHHH
T ss_pred EecCCCChHHHHHhcCCEEEECCcccCcch------hhcCCCccEEEEEeEeECCEEEEEEEecCCCCCCCCHHHHHHHH
Confidence 588999999999999999999987763322 2233578999999982 28999999764 234677777
Q ss_pred HHHHHhc
Q 046178 211 QVKSLFG 217 (515)
Q Consensus 211 ~ik~~F~ 217 (515)
.+-....
T Consensus 162 ~lA~~ia 168 (195)
T 1vhm_A 162 QLVAQLE 168 (195)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7766654
No 28
>2vjw_A GAF-B, GAF family protein; histidine kinase, hypoxia sensing, hydrolase; HET: MSE; 2.0A {Mycobacterium smegmatis} PDB: 2vks_A
Probab=92.98 E-value=0.051 Score=48.26 Aligned_cols=48 Identities=15% Similarity=-0.008 Sum_probs=40.7
Q ss_pred eeCCCCCccceEeeCCCeeeeeCCCCcCcCcchhHHHHhhcCCceEEEEecC-----CceEeeccc
Q 046178 139 SFGAGVGIPGRAQSSGSLVWLTGSHELQFYNCERAKEAQSHGIETFVCIPTS-----CGVLELGSS 199 (515)
Q Consensus 139 sf~~g~GlpG~a~~sg~~~Wl~~~~~~~~~~~~r~~~a~~~giqTivciP~~-----~GVvELGSt 199 (515)
.|+.|.|+.|+++.+|+|+++.+....+ |++.++|||+. -|||.++..
T Consensus 55 ~~~~~~g~~g~v~~~g~~v~v~d~~~d~-------------~~~s~l~vPL~~~~~~~GvL~l~~~ 107 (149)
T 2vjw_A 55 AIPVQDNAIGQAFRDRAPRRLDVLDGPG-------------LGGPALVLPLRATDTVAGVLVAVQG 107 (149)
T ss_dssp EEESSSSHHHHHHHHCCCEEESCCCTTS-------------CEEEEEEEEEEETTEEEEEEEEEEE
T ss_pred ccCCCCCHHHHHhhcCceEEecCcccCC-------------CCCeEEEEEEccCCeEEEEEEEeeC
Confidence 5788999999999999999998865422 78999999983 389999886
No 29
>2e4s_A CAMP and CAMP-inhibited CGMP 3',5'-cyclic phosphodiesterase 10A; GAF domain, structural genomics, NPPSFA; HET: MSE CMP; 2.10A {Homo sapiens} PDB: 2zmf_A*
Probab=92.89 E-value=0.076 Score=47.02 Aligned_cols=77 Identities=13% Similarity=0.196 Sum_probs=54.2
Q ss_pred eeeCCCCCccceEeeCCCeeeeeCCCCcCcCcchhHH-HHhhcCCceEEEEec-----CCceEeecccccc----ccChh
Q 046178 138 RSFGAGVGIPGRAQSSGSLVWLTGSHELQFYNCERAK-EAQSHGIETFVCIPT-----SCGVLELGSSDLI----RENWG 207 (515)
Q Consensus 138 ~sf~~g~GlpG~a~~sg~~~Wl~~~~~~~~~~~~r~~-~a~~~giqTivciP~-----~~GVvELGSt~~v----~E~~~ 207 (515)
..|+.|.|+.|+++.+|+++++.+....+ .|.+.. .....+++.++|||+ .-|||.+++...- .+|..
T Consensus 84 ~~~~~~~~~~~~v~~~~~~~~i~d~~~~~--~~~~~~~~~~~~~~~s~l~vPl~~~~~~iGvl~l~~~~~~~~f~~~d~~ 161 (189)
T 2e4s_A 84 IRFSIEKGIAGQVARTGEVLNIPDAYADP--RFNREVDLYTGYTTRNILCMPIVSRGSVIGVVQMVNKISGSAFSKTDEN 161 (189)
T ss_dssp CEEETTSHHHHHHHHHCCCEEESCGGGST--TCCTHHHHHHCCCCCCEEEEEEEETTEEEEEEEEEEETTSSSCCHHHHH
T ss_pred eEeeCCCcHHHHHHHhCCEEEecCCCcCc--ccChhhccccCCccceEEEEEeccCCeEEEEEEEEeCCCCCCCCHHHHH
Confidence 36889999999999999999998755432 222221 122378999999998 3489999987643 34666
Q ss_pred HHHHHHHHh
Q 046178 208 LVHQVKSLF 216 (515)
Q Consensus 208 lv~~ik~~F 216 (515)
+++.+-...
T Consensus 162 ll~~la~~~ 170 (189)
T 2e4s_A 162 NFKMFAVFC 170 (189)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 666655443
No 30
>3e0y_A Conserved domain protein; APC87688.2, geobacter sulfurreducens PCA, structural genomics, PSI-2, midwest center for structural G MCSG; 3.10A {Geobacter sulfurreducens}
Probab=92.65 E-value=0.054 Score=47.30 Aligned_cols=76 Identities=18% Similarity=0.308 Sum_probs=49.3
Q ss_pred eeCCCCCccceEeeCCCeeeeeCCCCcCcCcchhHHHHhhcCCceEEEEec-----CCceEeecccccc---ccChhHHH
Q 046178 139 SFGAGVGIPGRAQSSGSLVWLTGSHELQFYNCERAKEAQSHGIETFVCIPT-----SCGVLELGSSDLI---RENWGLVH 210 (515)
Q Consensus 139 sf~~g~GlpG~a~~sg~~~Wl~~~~~~~~~~~~r~~~a~~~giqTivciP~-----~~GVvELGSt~~v---~E~~~lv~ 210 (515)
.++.|.|+.|+++.+++++++.+....+. |.........|++.++|||+ .-|||.+++.+.- .+|..+++
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~i~d~~~~~~--~~~~~~~~~~~~~s~l~vPl~~~~~~iGvl~~~~~~~~~f~~~~~~~l~ 154 (181)
T 3e0y_A 77 RIKIGDGITGSVARDGQYISLSRASQDPR--YRYFPELQEEKYNSMLSFPIGDKKEVYGVINLNTTSIRSFHEDEIYFVS 154 (181)
T ss_dssp EEETTTSSHHHHHHHCCCEEEEEECCCCC--C---------CEEEEEEEEEECSSCEEEEEEEEESSCCCCCHHHHHHHH
T ss_pred cccCCCCeeeehhhcCCeEEecCcccCcc--ccccccccccCcceEEEEEEEeCCeEEEEEEEeeCCCCCCCHHHHHHHH
Confidence 57789999999999999999987554322 22122234569999999998 2489999988632 33455555
Q ss_pred HHHHHh
Q 046178 211 QVKSLF 216 (515)
Q Consensus 211 ~ik~~F 216 (515)
.+-..+
T Consensus 155 ~la~~~ 160 (181)
T 3e0y_A 155 IIANLI 160 (181)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 554443
No 31
>3o1l_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 2.20A {Pseudomonas syringae PV}
Probab=92.19 E-value=0.8 Score=46.17 Aligned_cols=64 Identities=14% Similarity=0.034 Sum_probs=53.6
Q ss_pred eEEEEEEecCCCChHHHHHHHHHhCCceEEEEEEEee--CCEEEEEEEEEcCCCCCCHHHHHHHHH
Q 046178 447 DAMIRVQSENVNHPAAKLMSSLRDLDLQLHHASMSCV--NDLMLQDIVVRVPDGLRTEDALRSALL 510 (515)
Q Consensus 447 e~~I~I~C~~r~glL~~Im~aLeeL~LdV~~a~~S~~--~~~vl~~i~vkv~~~~~s~e~L~~aL~ 510 (515)
.+.|.|.|++++|+..+|-..|-+.|+.++.++.... .+.++--+.+.+++...+.++|++++.
T Consensus 22 ~~iLtv~c~DrpGIVa~VS~~La~~g~NI~d~~q~~d~~~g~FfMr~~~~~~~~~~~~~~L~~~l~ 87 (302)
T 3o1l_A 22 TFRLVIACPDRVGIVAKVSNFLASHNGWITEASHHSDNLSGWFFMRHEIRADTLPFDLDGFREAFT 87 (302)
T ss_dssp EEEEEEEEECCTTHHHHHHHHHHHTTCCEEEEEEEEETTTTEEEEEEEEEGGGSSSCHHHHHHHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHHHHCCCCEEEeeEEecCCCCeEEEEEEEecCCCCCCHHHHHHHHH
Confidence 4679999999999999999999999999999998865 566665666666655578899998875
No 32
>3mmh_A FRMSR, methionine-R-sulfoxide reductase; oxidoreductase; HET: SME MRD; 1.25A {Neisseria meningitidis} SCOP: d.110.2.0
Probab=92.18 E-value=0.037 Score=50.94 Aligned_cols=72 Identities=19% Similarity=0.197 Sum_probs=54.2
Q ss_pred eeCCCCCccceEeeCCCeeeeeCCCCcCcCcchhHHHHhhcCCceEEEEec-----CCceEeecccccc---ccChhHHH
Q 046178 139 SFGAGVGIPGRAQSSGSLVWLTGSHELQFYNCERAKEAQSHGIETFVCIPT-----SCGVLELGSSDLI---RENWGLVH 210 (515)
Q Consensus 139 sf~~g~GlpG~a~~sg~~~Wl~~~~~~~~~~~~r~~~a~~~giqTivciP~-----~~GVvELGSt~~v---~E~~~lv~ 210 (515)
.|+.|+|+.|+|+.+|+++.+.+....+.+ .+...+.+..+|||+ .-|||.+.+.+.- .+|..+++
T Consensus 77 ~i~~geGi~G~v~~~g~~~~v~Dv~~~p~~------~~~~~~~~S~i~vPi~~~g~viGVL~i~s~~~~~F~~~d~~~L~ 150 (167)
T 3mmh_A 77 RIPFGRGVCGQAWAKGGTVVVGDVDAHPDH------IACSSLSRSEIVVPLFSDGRCIGVLDADSEHLAQFDETDALYLG 150 (167)
T ss_dssp EEETTSHHHHHHHHHTSCEEESCGGGSTTC------CCSSTTCCEEEEEEEEETTEEEEEEEEEESSTTCCCHHHHHHHH
T ss_pred EeccCCChHHHHHhCCcEEEECCcccCcch------hhcCccCCeEEEEEeccCCEEEEEEEEecCCCCCCCHHHHHHHH
Confidence 689999999999999999999987654322 122357899999998 3489999986532 35666777
Q ss_pred HHHHHh
Q 046178 211 QVKSLF 216 (515)
Q Consensus 211 ~ik~~F 216 (515)
.+-...
T Consensus 151 ~lA~~l 156 (167)
T 3mmh_A 151 ELAKIL 156 (167)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 666554
No 33
>3obi_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.95A {Rhodopseudomonas palustris}
Probab=92.15 E-value=0.7 Score=46.20 Aligned_cols=66 Identities=8% Similarity=0.044 Sum_probs=54.3
Q ss_pred CeEEEEEEecCCCChHHHHHHHHHhCCceEEEEEEEe--eCCEEEEEEEEEcCCCCCCHHHHHHHHHH
Q 046178 446 SDAMIRVQSENVNHPAAKLMSSLRDLDLQLHHASMSC--VNDLMLQDIVVRVPDGLRTEDALRSALLR 511 (515)
Q Consensus 446 ~e~~I~I~C~~r~glL~~Im~aLeeL~LdV~~a~~S~--~~~~vl~~i~vkv~~~~~s~e~L~~aL~~ 511 (515)
..+.|.+.|++++|+..+|-..|-+.|+++..++..+ ..+.++-.+.+.+++...+.++|++++..
T Consensus 5 ~~~iLtv~g~DrpGIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ffmr~~~~~~~~~~~~~~L~~~f~~ 72 (288)
T 3obi_A 5 HQYVLTLSCPDRAGIVSAVSTFLFENGQNILDAQQYNDTESGHFFMRVVFNAAAKVIPLASLRTGFGV 72 (288)
T ss_dssp CEEEEEEEEECCTTHHHHHHHHHHHTTEEEEEEEEEEETTTTEEEEEEEEEESSCCCCHHHHHHHHHH
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHHCCCcEEeeeeeecCCCCceEEEEEEEcCCCCCCHHHHHHHHHH
Confidence 4578999999999999999999999999999998853 45666666667777666788999988753
No 34
>3p96_A Phosphoserine phosphatase SERB; ssgcid, structural genomics, structural genomics center for infectious disease, hydrolas; 2.05A {Mycobacterium avium}
Probab=91.73 E-value=0.31 Score=50.33 Aligned_cols=66 Identities=17% Similarity=0.220 Sum_probs=55.8
Q ss_pred CeEEEEEEecCCCChHHHHHHHHHhCCceEEEEEEEeeCCEEEEEEEEEcCCCCCCHHHHHHHHHH
Q 046178 446 SDAMIRVQSENVNHPAAKLMSSLRDLDLQLHHASMSCVNDLMLQDIVVRVPDGLRTEDALRSALLR 511 (515)
Q Consensus 446 ~e~~I~I~C~~r~glL~~Im~aLeeL~LdV~~a~~S~~~~~vl~~i~vkv~~~~~s~e~L~~aL~~ 511 (515)
..++|.|.|+.|+|+...|...|-+.|.+|+.++-....+.++-.+.+.+++...+.++|+++|..
T Consensus 11 ~~~~lt~~g~Dr~Giv~~vs~~l~~~~~nI~d~~q~~~~~~f~~~~~~~~~~~~~~~~~l~~~l~~ 76 (415)
T 3p96_A 11 VSVLITVTGVDQPGVTATLFEVLSRHGVELLNVEQVVIRHRLTLGVLVCCPADVADGPALRHDVEA 76 (415)
T ss_dssp EEEEEEEEEECCTTHHHHHHHHHTTTTCEEEEEEEEEETTEEEEEEEEEECHHHHTSHHHHHHHHH
T ss_pred CeEEEEEEcCCCCCHHHHHHHHHHHCCCCEEEeeeEEECCEeEEEEEEEecCCcCCHHHHHHHHHH
Confidence 357899999999999999999999999999999999999988777777776544455788888754
No 35
>3hcy_A Putative two-component sensor histidine kinase PR; two-component sensor histidine kinase protein, structural GE PSI, MCSG; 2.80A {Sinorhizobium meliloti}
Probab=91.43 E-value=0.28 Score=41.99 Aligned_cols=59 Identities=10% Similarity=0.073 Sum_probs=38.9
Q ss_pred CCCCccceEeeCCCeeeeeCCCCcCcCcchhHHHHhhcCCceEEEEec-----CCceEeeccccc
Q 046178 142 AGVGIPGRAQSSGSLVWLTGSHELQFYNCERAKEAQSHGIETFVCIPT-----SCGVLELGSSDL 201 (515)
Q Consensus 142 ~g~GlpG~a~~sg~~~Wl~~~~~~~~~~~~r~~~a~~~giqTivciP~-----~~GVvELGSt~~ 201 (515)
.|.|..|+++.+|+|+++.+....+.....+ -.+...|++.++|||+ .-|||.+.+...
T Consensus 52 ~~~~~~~~~~~~~~~~~i~d~~~~~~~~~~~-~~~~~~g~~s~~~vPl~~~~~~iGvl~~~~~~~ 115 (151)
T 3hcy_A 52 DGHSPWITGANEPEPIFVENVDDAEFSRELK-ESIVGEGIAALGFFPLVTEGRLIGKFMTYYDRP 115 (151)
T ss_dssp CBCCSCC---CCCCCEEESCGGGSCCCHHHH-HHHHHHTCCEEEEEEEESSSSEEEEEEEEESSC
T ss_pred cCCCchhhhhhcCCcEEEeChhhCcccchhH-HHHHhcCchheEEeceEECCEEEEEEEEecCCC
Confidence 4678899999999999998765433211111 1345579999999998 237888887654
No 36
>3n0v_A Formyltetrahydrofolate deformylase; formyl transferase, ACT domain, structural genomics, joint C structural genomics, JCSG; HET: MSE; 2.25A {Pseudomonas putida}
Probab=91.30 E-value=0.94 Score=45.25 Aligned_cols=65 Identities=11% Similarity=0.071 Sum_probs=53.0
Q ss_pred CeEEEEEEecCCCChHHHHHHHHHhCCceEEEEEEEe--eCCEEEEEEEEEcCCCCCCHHHHHHHHHH
Q 046178 446 SDAMIRVQSENVNHPAAKLMSSLRDLDLQLHHASMSC--VNDLMLQDIVVRVPDGLRTEDALRSALLR 511 (515)
Q Consensus 446 ~e~~I~I~C~~r~glL~~Im~aLeeL~LdV~~a~~S~--~~~~vl~~i~vkv~~~~~s~e~L~~aL~~ 511 (515)
..+.|.|.|++++|+..+|-..|-+.|+++..++..+ ..+.++-.+.+..++ ..+.++|++++..
T Consensus 7 ~~~vLtv~c~DrpGIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ffmr~~~~~~~-~~~~~~L~~~f~~ 73 (286)
T 3n0v_A 7 DTWILTADCPSMLGTVDVVTRYLFEQRCYVTEHHSFDDRQSGRFFIRVEFRQPD-DFDEAGFRAGLAE 73 (286)
T ss_dssp CCEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTTTEEEEEEEEECCS-SCCHHHHHHHHHH
T ss_pred CcEEEEEEeCCCCCHHHHHHHHHHHCCCCeeeeeeeccCCCCeeEEEEEEecCC-CCCHHHHHHHHHH
Confidence 3478999999999999999999999999999998883 456665566666655 4688999988753
No 37
>3trc_A Phosphoenolpyruvate-protein phosphotransferase; signal transduction; HET: MSE; 1.65A {Coxiella burnetii}
Probab=90.80 E-value=0.097 Score=45.30 Aligned_cols=75 Identities=16% Similarity=0.177 Sum_probs=51.0
Q ss_pred eeCCCCCccceEeeCCCeeeeeCCCCcCcCcchhHHHHhhcCCceEEEEec-----CCceEeecccccc---ccChhHHH
Q 046178 139 SFGAGVGIPGRAQSSGSLVWLTGSHELQFYNCERAKEAQSHGIETFVCIPT-----SCGVLELGSSDLI---RENWGLVH 210 (515)
Q Consensus 139 sf~~g~GlpG~a~~sg~~~Wl~~~~~~~~~~~~r~~~a~~~giqTivciP~-----~~GVvELGSt~~v---~E~~~lv~ 210 (515)
.++.|.|+.|+++.+++++++.+....+... ........|++.++|||+ .-|||.+++.+.- .+|..+++
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~--~~~~~~~~~~~s~l~vPl~~~~~~~Gvl~~~~~~~~~f~~~d~~~l~ 149 (171)
T 3trc_A 72 RLKFGEGLIGLVGEREEPINLADAPLHPAYK--HRPELGEEDYHGFLGIPIIEQGELLGILVIQQLESHHFAEEEEAFCV 149 (171)
T ss_dssp EEETTCHHHHHHHHHTSCEEESCGGGSTTCC--CCGGGCCCCCCEEEEEEEEETTEEEEEEEEEESSSCCCCHHHHHHHH
T ss_pred eecCCCChhhHHHhcCCeEEeCCCCCCCccc--ccccCCcccccEEEEEeEEECCEEEEEEEEeecCCCCCCHHHHHHHH
Confidence 5788999999999999999998755422111 111123479999999998 3489999987542 23445555
Q ss_pred HHHHH
Q 046178 211 QVKSL 215 (515)
Q Consensus 211 ~ik~~ 215 (515)
.+-..
T Consensus 150 ~la~~ 154 (171)
T 3trc_A 150 TLAIH 154 (171)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 54443
No 38
>2w3g_A DOSS, two component sensor histidine kinase DEVS (GAF family protein); redox sensor, heme, hypoxia, GAF domain, transferase; HET: HEM; 1.40A {Mycobacterium tuberculosis} PDB: 2w3d_A* 2w3f_A* 2w3e_A* 2w3h_A* 2y79_A* 2y8h_A* 2vzw_A*
Probab=90.52 E-value=0.14 Score=43.29 Aligned_cols=74 Identities=18% Similarity=0.155 Sum_probs=50.1
Q ss_pred eeCCCCCccceEeeCCCeeeeeCCCCcCcCcchhHHHHhhcCCceEEEEec-----CCceEeeccccc----cccChhHH
Q 046178 139 SFGAGVGIPGRAQSSGSLVWLTGSHELQFYNCERAKEAQSHGIETFVCIPT-----SCGVLELGSSDL----IRENWGLV 209 (515)
Q Consensus 139 sf~~g~GlpG~a~~sg~~~Wl~~~~~~~~~~~~r~~~a~~~giqTivciP~-----~~GVvELGSt~~----v~E~~~lv 209 (515)
.++.+.|+.|+++.+++++++.+....+...... ....|++.++|||+ .-|||.+++... -.++..++
T Consensus 56 ~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~---~~~~~~~s~l~vPl~~~~~~~Gvl~l~~~~~~~~f~~~~~~~l 132 (153)
T 2w3g_A 56 HLPKGLGVIGLLIEDPKPLRLDDVSAHPASIGFP---PYHPPMRTFLGVPVRVRDESFGTLYLTDKTNGQPFSDDDEVLV 132 (153)
T ss_dssp SCCCSCTHHHHHHHSCSCEEESSGGGSTTCCCCC---TTCCCCCCEEEEEEEETTEEEEEEEEEEETTSCCCCHHHHHHH
T ss_pred cCCCCCCHHHHHHhcCCcEEecCcccCchhcCCC---CcCCCCCeEEEeeEEECCEEEEEEEEeeCCCCCCCCHHHHHHH
Confidence 4667899999999999999998754322111011 13468999999998 348999998765 23455555
Q ss_pred HHHHHH
Q 046178 210 HQVKSL 215 (515)
Q Consensus 210 ~~ik~~ 215 (515)
+.+-..
T Consensus 133 ~~la~~ 138 (153)
T 2w3g_A 133 QALAAA 138 (153)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 555443
No 39
>3k2n_A Sigma-54-dependent transcriptional regulator; PSI-2, protein structure initiative, structural genomics; 2.50A {Chlorobium tepidum tls}
Probab=90.50 E-value=0.43 Score=41.60 Aligned_cols=75 Identities=12% Similarity=0.089 Sum_probs=49.7
Q ss_pred eeCCCCCccceEeeCCCeeeeeCCCC-cCcCcch-hHH--HHhhcCCceEEEEec-----CCceEeeccccccc---cCh
Q 046178 139 SFGAGVGIPGRAQSSGSLVWLTGSHE-LQFYNCE-RAK--EAQSHGIETFVCIPT-----SCGVLELGSSDLIR---ENW 206 (515)
Q Consensus 139 sf~~g~GlpG~a~~sg~~~Wl~~~~~-~~~~~~~-r~~--~a~~~giqTivciP~-----~~GVvELGSt~~v~---E~~ 206 (515)
.++.+.|+.|+++.+++++.+ +... .....+. +.. .....|++.++|||+ .-|||.+++...-. +|.
T Consensus 72 ~~~~~~~~~~~v~~~~~~~~~-d~~~~~~~~~~~~~~~~~~~~~~~~~s~l~vPL~~~~~~iGvL~l~~~~~~~f~~~d~ 150 (177)
T 3k2n_A 72 TRSIAGTWLEGHLDDRTVTVA-SIARDIPSFGADGAPLLWTLHELGMRQIVLSPLRSGGRVIGFLSFVSAEEKLWSDGDK 150 (177)
T ss_dssp EEECTTSGGGGGTTCCSCEEE-ETTTTCTTTTTTTCHHHHHHHHHTCCEEEEEEEEETTEEEEEEEEEESSCCCCCHHHH
T ss_pred cCCccccHHHHHhccCCceEe-chhhcccccCCcchhHHHHHHHcCceEEEEEEEEECCEEEEEEEEEECCCCCCCHHHH
Confidence 467789999999999999998 4433 2222222 221 245579999999998 34899998865432 344
Q ss_pred hHHHHHHH
Q 046178 207 GLVHQVKS 214 (515)
Q Consensus 207 ~lv~~ik~ 214 (515)
.+++.+-.
T Consensus 151 ~ll~~lA~ 158 (177)
T 3k2n_A 151 SLLSGVSS 158 (177)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 45554443
No 40
>3ksh_A Putative uncharacterized protein; FRMSR, free-Met-R-SO, oxidoreductase; 1.50A {Staphylococcus aureus} SCOP: d.110.2.0 PDB: 3ksf_A 3ksi_A 3ksg_A*
Probab=90.40 E-value=0.11 Score=47.59 Aligned_cols=72 Identities=15% Similarity=0.183 Sum_probs=54.4
Q ss_pred eeCCCCCccceEeeCCCeeeeeCCCCcCcCcchhHHHHhhcCCceEEEEec-----CCceEeecccccc---ccChhHHH
Q 046178 139 SFGAGVGIPGRAQSSGSLVWLTGSHELQFYNCERAKEAQSHGIETFVCIPT-----SCGVLELGSSDLI---RENWGLVH 210 (515)
Q Consensus 139 sf~~g~GlpG~a~~sg~~~Wl~~~~~~~~~~~~r~~~a~~~giqTivciP~-----~~GVvELGSt~~v---~E~~~lv~ 210 (515)
.++.|+|+.|+|+.+|+++-+.+....+.+ .+...+.+..+|||+ .-|||.+.|.+.- .+|..+++
T Consensus 76 ri~~GeGv~G~aa~~~~~i~V~Dv~~~p~~------i~~~~~~~Sei~VPI~~~g~viGVL~i~s~~~~~F~e~D~~~L~ 149 (160)
T 3ksh_A 76 HIPIGKGVCGTAVSERRTQVVADVHQFKGH------IACDANSKSEIVVPIFKDDKIIGVLDIDAPITDRFDDNDKEHLE 149 (160)
T ss_dssp EEETTSHHHHHHHHHTSCEEESCGGGSTTC------CGGGTTCSEEEEEEEEETTEEEEEEEEEESSSSCCCHHHHHHHH
T ss_pred EeeCCCCHHHHHHhhCCEEEECCcccCccc------cccCcccCceEEEEEEECCEEEEEEEEecCCCCCCCHHHHHHHH
Confidence 699999999999999999999988764432 123456789999998 2389999986442 35666777
Q ss_pred HHHHHh
Q 046178 211 QVKSLF 216 (515)
Q Consensus 211 ~ik~~F 216 (515)
.+-...
T Consensus 150 ~lA~~l 155 (160)
T 3ksh_A 150 AIVKII 155 (160)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 766554
No 41
>3rfb_A Putative uncharacterized protein; FRMSR, GAF, oxidoreductase, SME; HET: SME; 2.30A {Streptococcus pneumoniae}
Probab=90.19 E-value=0.15 Score=47.32 Aligned_cols=74 Identities=19% Similarity=0.228 Sum_probs=57.4
Q ss_pred eeCCCCCccceEeeCCCeeeeeCCCCcCcCcchhHHHHhhcCCceEEEEec-----CCceEeecccccc---ccChhHHH
Q 046178 139 SFGAGVGIPGRAQSSGSLVWLTGSHELQFYNCERAKEAQSHGIETFVCIPT-----SCGVLELGSSDLI---RENWGLVH 210 (515)
Q Consensus 139 sf~~g~GlpG~a~~sg~~~Wl~~~~~~~~~~~~r~~~a~~~giqTivciP~-----~~GVvELGSt~~v---~E~~~lv~ 210 (515)
.++.|+|+.|+|+.+|+++-+.+....+.+. +...+.+..+|||+ .-|||.+.|.+.- .+|..+++
T Consensus 77 ri~~GeGv~G~va~tg~~i~V~Dv~~~p~~i------~~~~~~~Sei~VPI~~~g~viGVL~i~s~~~~~F~e~D~~~L~ 150 (171)
T 3rfb_A 77 RIALGKGVCGEAAHFQETVIVGDVTTYLNYI------SCDSLAKSEIVVPMMKNGQLLGVLDLDSSEIEDYDAMDRDYLE 150 (171)
T ss_dssp EEETTSHHHHHHHHTTSCEEESCTTSCSSCC------CSCTTCCEEEEEEEEETTEEEEEEEEEESSTTCCCHHHHHHHH
T ss_pred EeeCCcCHHHHHHhhCCEEEECCcccCcccc------ccCcccCceEEEEEEECCEEEEEEEEecCCCCCCCHHHHHHHH
Confidence 6999999999999999999999988754331 22346789999998 2389999986432 46778888
Q ss_pred HHHHHhcc
Q 046178 211 QVKSLFGS 218 (515)
Q Consensus 211 ~ik~~F~~ 218 (515)
.+-.....
T Consensus 151 ~lA~~la~ 158 (171)
T 3rfb_A 151 QFVAILLE 158 (171)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88877754
No 42
>3lou_A Formyltetrahydrofolate deformylase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative hydrolase; HET: MSE; 1.90A {Burkholderia mallei}
Probab=89.76 E-value=1.4 Score=44.12 Aligned_cols=66 Identities=11% Similarity=0.088 Sum_probs=50.6
Q ss_pred CeEEEEEEecCCCChHHHHHHHHHhCCceEEEEEEEe--eCCEEEEEEEEEcC--CCCCCHHHHHHHHHH
Q 046178 446 SDAMIRVQSENVNHPAAKLMSSLRDLDLQLHHASMSC--VNDLMLQDIVVRVP--DGLRTEDALRSALLR 511 (515)
Q Consensus 446 ~e~~I~I~C~~r~glL~~Im~aLeeL~LdV~~a~~S~--~~~~vl~~i~vkv~--~~~~s~e~L~~aL~~ 511 (515)
..+.|.+.|++++|+..+|-..|-+.|++++.++..+ ..+.++--+.+..+ +...+.++|++++..
T Consensus 9 ~~~vLtv~c~Dr~GIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ffmr~~~~~~~~~~~~~~~~L~~~f~~ 78 (292)
T 3lou_A 9 HQFVLTLSCPSAAGQVAAVVGLLDRHRCYVDELTVFDDDLSARFFVRCVFHATDDADALRVDALRREFEP 78 (292)
T ss_dssp CEEEEEEEEESCSCHHHHHHHHHHHTTEEEEEEEEEEETTTTEEEEEEEEEECC----CCHHHHHHHHHH
T ss_pred CcEEEEEEcCCCCCHHHHHHHHHHHCCCCEEeeEEEecCCCCceEEEEEEEccCcccCCCHHHHHHHHHH
Confidence 4578999999999999999999999999999998884 44555544555444 424678899988753
No 43
>3ci6_A Phosphoenolpyruvate-protein phosphotransferase; PEP-phosphotransferase, GAF domain, structura genomics, PSI-2, protein structure initiative; HET: MSE P4G; 1.55A {Acinetobacter SP}
Probab=89.35 E-value=0.15 Score=43.44 Aligned_cols=75 Identities=15% Similarity=0.162 Sum_probs=47.6
Q ss_pred eeCCCCCccceEeeCCCeeeeeCCCCcCcCcchhHHHHhhcCCceEEEEec-----CCceEeecccccc---ccChhHHH
Q 046178 139 SFGAGVGIPGRAQSSGSLVWLTGSHELQFYNCERAKEAQSHGIETFVCIPT-----SCGVLELGSSDLI---RENWGLVH 210 (515)
Q Consensus 139 sf~~g~GlpG~a~~sg~~~Wl~~~~~~~~~~~~r~~~a~~~giqTivciP~-----~~GVvELGSt~~v---~E~~~lv~ 210 (515)
.++.+.|+.|+++.+++++++.+....+. +.........|+++++|||+ .-|||.+++.+.- .+|..+++
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~d~~~~~~--~~~~~~~~~~~~~s~l~vPl~~~~~~~Gvl~l~~~~~~~f~~~~~~~l~ 151 (171)
T 3ci6_A 74 SLQLSEGLVGLVGQREEIVNLENASKHER--FAYLPETGEEIYNSFLGVPVMYRRKVMGVLVVQNKQPQDFSEAAESFLV 151 (171)
T ss_dssp EEETTSHHHHHHHHHTSCEEESSGGGSTT--C---------CCCEEEEEEEEETTEEEEEEEEEESSCCCCCHHHHHHHH
T ss_pred eeeccCCeehhhhccCceEEecCCCcCcc--hhccccccccccceEEEEeEEECCEEEEEEEEecCCCCCCCHHHHHHHH
Confidence 46778899999999999999986544321 11111124568999999998 3489999988543 23444555
Q ss_pred HHHHH
Q 046178 211 QVKSL 215 (515)
Q Consensus 211 ~ik~~ 215 (515)
.+-..
T Consensus 152 ~la~~ 156 (171)
T 3ci6_A 152 TLCAQ 156 (171)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44443
No 44
>2qyb_A Membrane protein, putative; GAF domain, domain of putative membrane protein, PSI-2, MCSG structural genomics; 2.40A {Geobacter sulfurreducens pca}
Probab=88.82 E-value=0.41 Score=42.14 Aligned_cols=75 Identities=20% Similarity=0.213 Sum_probs=51.0
Q ss_pred CCCCCccceEeeCCCeeeeeCCCCcCcCcchhHHHHhhcCCceEEEEec------CCceEeecc-cccc---ccChhHHH
Q 046178 141 GAGVGIPGRAQSSGSLVWLTGSHELQFYNCERAKEAQSHGIETFVCIPT------SCGVLELGS-SDLI---RENWGLVH 210 (515)
Q Consensus 141 ~~g~GlpG~a~~sg~~~Wl~~~~~~~~~~~~r~~~a~~~giqTivciP~------~~GVvELGS-t~~v---~E~~~lv~ 210 (515)
+.|.|+.|+++.+|+++.+.+....+. ...+. .+...|++.++|||+ .-|||.+++ ...- .+|..+++
T Consensus 69 ~~~~~~~~~~~~~~~~~~v~d~~~~~~-~~~~~-~~~~~g~~s~~~vPl~~~~~~~~GvL~l~~~~~~~~f~~~d~~lL~ 146 (181)
T 2qyb_A 69 PEIETYIGEAFLSNRLQFVNDTQYMTK-PLTRE-LMQKEGIKSFAHIPISRKGEPPFGILSVFSRTIVGLFNEPFLNLLE 146 (181)
T ss_dssp CCTTSHHHHHHHHTSCEEESCGGGCSC-HHHHH-HHHHTTCCEEEEEEECCTTSCCCEEEEEEESSCSSCCCHHHHHHHH
T ss_pred cCCCCchhhhhhcCCCEEecChhcCCc-hhhHH-HHHhcCcceEEEEEEEeCCCeEEEEEEEecCCCCCCCCHHHHHHHH
Confidence 347899999999999999987654332 11111 234479999999997 348999998 5432 34556666
Q ss_pred HHHHHhc
Q 046178 211 QVKSLFG 217 (515)
Q Consensus 211 ~ik~~F~ 217 (515)
.+-..+.
T Consensus 147 ~la~~~a 153 (181)
T 2qyb_A 147 SLAGQLA 153 (181)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6665553
No 45
>2zmf_A CAMP and CAMP-inhibited CGMP 3',5'-cyclic phospho 10A; GAF domain, phosphodiesterase, CGMP-binding, HYD nucleotide-binding, structural genomics; HET: MSE CMP; 2.10A {Homo sapiens}
Probab=88.71 E-value=0.12 Score=45.58 Aligned_cols=76 Identities=13% Similarity=0.240 Sum_probs=51.5
Q ss_pred eeCCCCCccceEeeCCCeeeeeCCCCcCcCcchhHHHHhhcCCceEEEEec-----CCceEeeccccc----cccChhHH
Q 046178 139 SFGAGVGIPGRAQSSGSLVWLTGSHELQFYNCERAKEAQSHGIETFVCIPT-----SCGVLELGSSDL----IRENWGLV 209 (515)
Q Consensus 139 sf~~g~GlpG~a~~sg~~~Wl~~~~~~~~~~~~r~~~a~~~giqTivciP~-----~~GVvELGSt~~----v~E~~~lv 209 (515)
.++.|.|+.|+++.+|+++++.+....+... .........+++.++|+|+ .-|||.+..... -.+|..++
T Consensus 85 ~~~~~~~~~~~v~~~~~~~~i~d~~~~~~~~-~~~~~~~~~~~~s~l~vPl~~~~~~~Gvl~l~~~~~~~~f~~~d~~ll 163 (189)
T 2zmf_A 85 RFSIEKGIAGQVARTGEVLNIPDAYADPRFN-REVDLYTGYTTRNILCMPIVSRGSVIGVVQMVNKISGSAFSKTDENNF 163 (189)
T ss_dssp EEETTSHHHHHHHHHCCCEEESCGGGSTTCC-THHHHHHCCCCCCEEEEEEEETTEEEEEEEEEEETTSSSCCHHHHHHH
T ss_pred ccCCCccHHHHHHHhCCeEEEeccccccccc-ccchhhcccccceEEEeeecccCceeeEEEEEEcCCCCCcCHHHHHHH
Confidence 5889999999999999999998765533222 2222334468999999998 236787764432 23455666
Q ss_pred HHHHHH
Q 046178 210 HQVKSL 215 (515)
Q Consensus 210 ~~ik~~ 215 (515)
+.+-..
T Consensus 164 ~~lA~q 169 (189)
T 2zmf_A 164 KMFAVF 169 (189)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 665443
No 46
>3oov_A Methyl-accepting chemotaxis protein, putative; structural genomics, PSI-2, protein structure initiative; 2.20A {Geobacter sulfurreducens}
Probab=87.05 E-value=0.18 Score=43.41 Aligned_cols=73 Identities=8% Similarity=0.087 Sum_probs=49.7
Q ss_pred CCCccceEeeCCCeeeeeCCCCcCcCcchhH--HHHhhcCCceEEEEec-----CCceEeeccccc----cccChhHHHH
Q 046178 143 GVGIPGRAQSSGSLVWLTGSHELQFYNCERA--KEAQSHGIETFVCIPT-----SCGVLELGSSDL----IRENWGLVHQ 211 (515)
Q Consensus 143 g~GlpG~a~~sg~~~Wl~~~~~~~~~~~~r~--~~a~~~giqTivciP~-----~~GVvELGSt~~----v~E~~~lv~~ 211 (515)
|.|+.|+++.+++++++.+....+.....+. ......|++.++|+|+ .-|||.+++... -.+|.++++.
T Consensus 72 ~~~~~~~~~~~~~~~~i~d~~~~~~~~~~~~~~~~~~~~~~~s~l~vPl~~~~~~iGvl~~~~~~~~~~f~~~d~~~l~~ 151 (169)
T 3oov_A 72 RGGVITKCFTDRQVYMIDDVSAYPTDFRLQSPYDAIRALRSKSFVICPIVVKGEAIGVFAVDNRSSRRSLNDTDVDTIKL 151 (169)
T ss_dssp GGHHHHHHHHHTCCEEESCGGGSCGGGSCCTTGGGCGGGCCSSEEEEEEEETTEEEEEEEEECTTSSSCCCHHHHHHHHH
T ss_pred ccchHHHHHhcCCCEEeccccchhhhhhccccHHHHHhcCcCcEEEEEEEeCCcEEEEEEEEccccCCCCCHHHHHHHHH
Confidence 7899999999999999987655332221111 1234479999999998 348999998643 2345566665
Q ss_pred HHHH
Q 046178 212 VKSL 215 (515)
Q Consensus 212 ik~~ 215 (515)
+-..
T Consensus 152 ~a~~ 155 (169)
T 3oov_A 152 FADQ 155 (169)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5543
No 47
>1ykd_A Adenylate cyclase; GAF domain, bound cyclic AMP ligand, lyase; HET: CMP; 1.90A {Anabaena SP}
Probab=86.59 E-value=0.39 Score=48.47 Aligned_cols=63 Identities=17% Similarity=0.238 Sum_probs=44.2
Q ss_pred eeeCCCCCccceEeeCCCeeeee-CCCCcCcCcchhHHHHh-hcCCceEEEEecCC------ceEeecccc
Q 046178 138 RSFGAGVGIPGRAQSSGSLVWLT-GSHELQFYNCERAKEAQ-SHGIETFVCIPTSC------GVLELGSSD 200 (515)
Q Consensus 138 ~sf~~g~GlpG~a~~sg~~~Wl~-~~~~~~~~~~~r~~~a~-~~giqTivciP~~~------GVvELGSt~ 200 (515)
..++.|.|+.|+++.+|+++++. +....+.....+..... ..+++.++|||+.. |||.+.+..
T Consensus 261 ~~~~~~~~~~~~v~~~~~~~~i~~d~~~~~~~~~~~~~~~~~~~~~~s~l~vPl~~~~~~~iGvl~l~~~~ 331 (398)
T 1ykd_A 261 LRVPIGKGFAGIVAASGQKLNIPFDLYDHPDSATAKQIDQQNGYRTCSLLCMPVFNGDQELIGVTQLVNKK 331 (398)
T ss_dssp EEEETTSHHHHHHHHHCCCEEECSCGGGSTTCHHHHHHHHHHTCCCCCEEEEEEECSSSCEEEEEEEEEEC
T ss_pred eeccCCCchhhHHhccCCeEEeccccccCcccCcccchhhhcCCeeeeEEEEeeecCCCCEEEEEEEEecC
Confidence 35788999999999999999998 65443322222212222 24578899999863 899998766
No 48
>3ibj_A CGMP-dependent 3',5'-cyclic phosphodiesterase; PDE2A, GAF-domains, allosteric regulation hydrolase, membrane; 3.02A {Homo sapiens}
Probab=84.09 E-value=0.51 Score=52.18 Aligned_cols=77 Identities=18% Similarity=0.264 Sum_probs=53.1
Q ss_pred eeCCCCCccceEeeCCCeeeeeCCCCcCcCcchhHHHHh-hcCCceEEEEec--C-C---ceEeecccccc----ccChh
Q 046178 139 SFGAGVGIPGRAQSSGSLVWLTGSHELQFYNCERAKEAQ-SHGIETFVCIPT--S-C---GVLELGSSDLI----RENWG 207 (515)
Q Consensus 139 sf~~g~GlpG~a~~sg~~~Wl~~~~~~~~~~~~r~~~a~-~~giqTivciP~--~-~---GVvELGSt~~v----~E~~~ 207 (515)
.++.|.|+.|+++.+|+++++.+....+. |.+..... ..+++.++|+|+ . + |||.+.+...- .+|..
T Consensus 245 ~~~~~~gi~g~v~~~g~~v~i~d~~~d~~--~~~~~~~~~g~~~rS~L~vPL~~~~g~viGVL~l~~~~~~~~f~~~d~~ 322 (691)
T 3ibj_A 245 RIPADQGIAGHVATTGQILNIPDAYAHPL--FYRGVDDSTGFRTRNILCFPIKNENQEVIGVAELVNKINGPWFSKFDED 322 (691)
T ss_dssp EEETTSHHHHHHHHHCSCEEESCSTTSTT--C------CCSCCCCCEEEEECCCSSSCCCEEEEEEEESSSSSCCTTTTH
T ss_pred eccCCCCHHHHHHHhCCEEEecCcccCcc--ccchhhcccCCeeeeEEEEeEECCCCCEEEEEEEEECCCCCCCCHHHHH
Confidence 57889999999999999999987665432 22222211 146899999998 3 2 89999876543 56777
Q ss_pred HHHHHHHHhc
Q 046178 208 LVHQVKSLFG 217 (515)
Q Consensus 208 lv~~ik~~F~ 217 (515)
+++.+-....
T Consensus 323 ll~~lA~~~a 332 (691)
T 3ibj_A 323 LATAFSIYCG 332 (691)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 7777665553
No 49
>3nrb_A Formyltetrahydrofolate deformylase; N-terminal ACT domain, structural genomics, joint center for structural genomics, JCSG; HET: MSE FLC; 2.05A {Pseudomonas putida}
Probab=83.07 E-value=4.1 Score=40.56 Aligned_cols=63 Identities=10% Similarity=0.103 Sum_probs=46.9
Q ss_pred CeEEEEEEecCCCChHHHHHHHHHhCCceEEEEEEEe--eCCEEEEEEEEEcCCCCCCHHHHHHHHH
Q 046178 446 SDAMIRVQSENVNHPAAKLMSSLRDLDLQLHHASMSC--VNDLMLQDIVVRVPDGLRTEDALRSALL 510 (515)
Q Consensus 446 ~e~~I~I~C~~r~glL~~Im~aLeeL~LdV~~a~~S~--~~~~vl~~i~vkv~~~~~s~e~L~~aL~ 510 (515)
..+.|.+.|++++|+..+|-..|-+.|+.++.++..+ ..+.++-.+.+..+. .+.++|++++.
T Consensus 6 ~~~vLtv~c~Dr~GIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ffmr~~~~~~~--~~~~~L~~~f~ 70 (287)
T 3nrb_A 6 NQYVLSLACQDAPGIVSEVSTFLFNNGANIVEAEQFNDEDSSKFFMRVSVEIPV--AGVNDFNSAFG 70 (287)
T ss_dssp TEEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTTTEEEEEEEEECCC-----CHHHHHHH
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHHCCCCEEeeeeeecCCCCeEEEEEEEEcCC--CCHHHHHHHHH
Confidence 3578999999999999999999999999999998863 455555555555443 23447777764
No 50
>2f1f_A Acetolactate synthase isozyme III small subunit; ferredoxin fold, ACT domain, transferase; HET: P33 1PE; 1.75A {Escherichia coli} SCOP: d.58.18.6 d.58.18.6
Probab=83.03 E-value=1.4 Score=40.39 Aligned_cols=62 Identities=11% Similarity=0.172 Sum_probs=45.7
Q ss_pred EEEEEEecCCCChHHHHHHHHHhCCceEEEEEEEeeC--CEEEEEEEEEcCCCCCCHHHHHHHHHH
Q 046178 448 AMIRVQSENVNHPAAKLMSSLRDLDLQLHHASMSCVN--DLMLQDIVVRVPDGLRTEDALRSALLR 511 (515)
Q Consensus 448 ~~I~I~C~~r~glL~~Im~aLeeL~LdV~~a~~S~~~--~~vl~~i~vkv~~~~~s~e~L~~aL~~ 511 (515)
-.|.|...+++|.|.+|..+|.+.|+++.+.++.... +...-+|++. .+ .-..++|...|.+
T Consensus 4 ~~IsV~v~NrpGvLarIt~lfs~rg~NI~Sl~v~~t~d~~~sriti~V~-~d-~~~leqI~kqL~K 67 (164)
T 2f1f_A 4 RILSVLLENESGALSRVIGLFSQRGYNIESLTVAPTDDPTLSRMTIQTV-GD-EKVLEQIEKQLHK 67 (164)
T ss_dssp EEEEEEEECCTTHHHHHHHHHHTTTCCCSEEEEEECSCSSEEEEEEEEE-SC-HHHHHHHHHHHHH
T ss_pred EEEEEEEeCCCcHHHHHHHHHHHCCCCeeeceeeecCCCCEEEEEEEEe-cc-HHHHHHHHHHHcC
Confidence 3578899999999999999999999999999987655 4555566666 22 2234455555543
No 51
>1mc0_A 3',5'-cyclic nucleotide phosphodiesterase 2A; GAF domain, 3',5' guanosine monophosphate, hydrolase; HET: PCG; 2.86A {Mus musculus} SCOP: d.110.2.1 d.110.2.1
Probab=82.59 E-value=0.44 Score=47.24 Aligned_cols=75 Identities=12% Similarity=0.133 Sum_probs=50.5
Q ss_pred eeCCCCCccceEeeCCCeeeeeCCCCcCcCcchhHHHHhhcCCceEEEEec-CC------ceEeeccccc----cccChh
Q 046178 139 SFGAGVGIPGRAQSSGSLVWLTGSHELQFYNCERAKEAQSHGIETFVCIPT-SC------GVLELGSSDL----IRENWG 207 (515)
Q Consensus 139 sf~~g~GlpG~a~~sg~~~Wl~~~~~~~~~~~~r~~~a~~~giqTivciP~-~~------GVvELGSt~~----v~E~~~ 207 (515)
.++.|.|+.|.++.+|+++++.+....+. ...-.+...+++.++|||+ .+ |||.+.+... -.+|..
T Consensus 75 ~~~~~~g~~g~~~~~~~~~~i~d~~~~~~---~~~~~~~~~~~~s~l~vPl~~~~~~~~~Gvl~l~~~~~~~~f~~~d~~ 151 (368)
T 1mc0_A 75 SFPLTMGRLGQVVEDKQCIQLKDLTSDDV---QQLQNMLGCELQAMLCVPVISRATDQVVALACAFNKLGGDFFTDEDEH 151 (368)
T ss_dssp EEESSSSSHHHHHHHCCCEEGGGSCHHHH---HHHHHHHCSCCCCEEEEEEECTTTCSEEEEEEEEEESSCSSCCSHHHH
T ss_pred eeccccCHHHHHHhcCCeEEecccccccc---cccccccCcccceEEEEEeecCCCCcEEEEEEeecCCCCCCCCHHHHH
Confidence 58899999999999999999987543221 1111122357899999998 33 7899876543 234556
Q ss_pred HHHHHHHHh
Q 046178 208 LVHQVKSLF 216 (515)
Q Consensus 208 lv~~ik~~F 216 (515)
+++.+-..+
T Consensus 152 ~l~~la~~~ 160 (368)
T 1mc0_A 152 VIQHCFHYT 160 (368)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 666554444
No 52
>1mc0_A 3',5'-cyclic nucleotide phosphodiesterase 2A; GAF domain, 3',5' guanosine monophosphate, hydrolase; HET: PCG; 2.86A {Mus musculus} SCOP: d.110.2.1 d.110.2.1
Probab=82.00 E-value=1.1 Score=44.36 Aligned_cols=77 Identities=17% Similarity=0.230 Sum_probs=51.8
Q ss_pred eeeCCCCCccceEeeCCCeeeeeCCCCcCcCcchhHHHHhh-cCCceEEEEec-CC-----ceEeecccccc----ccCh
Q 046178 138 RSFGAGVGIPGRAQSSGSLVWLTGSHELQFYNCERAKEAQS-HGIETFVCIPT-SC-----GVLELGSSDLI----RENW 206 (515)
Q Consensus 138 ~sf~~g~GlpG~a~~sg~~~Wl~~~~~~~~~~~~r~~~a~~-~giqTivciP~-~~-----GVvELGSt~~v----~E~~ 206 (515)
..++.|.|+.|+++.+|+++++.+....+. |.+...... ..++.++|||+ .. |||.+++...- .+|.
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~i~d~~~~~~--~~~~~~~~~~~~~~s~l~vPl~~~~~~~iGvl~l~~~~~~~~f~~~d~ 321 (368)
T 1mc0_A 244 IRIPADQGIAGHVATTGQILNIPDAYAHPL--FYRGVDDSTGFRTRNILCFPIKNENQEVIGVAELVNKINGPWFSKFDE 321 (368)
T ss_dssp CEECTTSHHHHHHHHHCCCEEESCSTTCTT--CCCTTHHHHTCCCCCEEEEEEECTTSCEEEEEEEEEETTSSSCCHHHH
T ss_pred eeecCCCceeeeehhhCCEEEecCcccCcc--cchhhhhccCCccceEEEEeeECCCCcEEEEEEEEECCCCCCCCHHHH
Confidence 357889999999999999999997665332 222221111 23599999998 33 79999887543 3455
Q ss_pred hHHHHHHHHh
Q 046178 207 GLVHQVKSLF 216 (515)
Q Consensus 207 ~lv~~ik~~F 216 (515)
.+++.+-...
T Consensus 322 ~ll~~la~~~ 331 (368)
T 1mc0_A 322 DLATAFSIYC 331 (368)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5665555444
No 53
>1y7p_A Hypothetical protein AF1403; structural genomics, protein structure initiative, PSI, alpha-beta-alpha sandwich; HET: RIP; 1.90A {Archaeoglobus fulgidus} SCOP: c.23.1.7 d.58.18.12
Probab=80.27 E-value=4.1 Score=39.24 Aligned_cols=60 Identities=12% Similarity=0.058 Sum_probs=44.1
Q ss_pred eEEEEEEecCCCChHHHHHHHHHhCCceEEEEEEEeeC-----CEEEEEEEEEcCCCCCCHHHHHHHHH
Q 046178 447 DAMIRVQSENVNHPAAKLMSSLRDLDLQLHHASMSCVN-----DLMLQDIVVRVPDGLRTEDALRSALL 510 (515)
Q Consensus 447 e~~I~I~C~~r~glL~~Im~aLeeL~LdV~~a~~S~~~-----~~vl~~i~vkv~~~~~s~e~L~~aL~ 510 (515)
.+.|.|.+.+|+|+|.+|+.+|.+.+.++.+.+.+... +.. .+.+++.+. ..++|...|.
T Consensus 4 ~VtL~I~a~DRpGLLsDIt~vLAe~kiNIltIn~~~~~kG~~ng~A--~I~IEV~d~--~Le~LL~kLr 68 (223)
T 1y7p_A 4 LRGLRIIAENKIGVLRDLTTIIAEEGGNITFAQTFLIKHGEHEGKA--LIYFEIEGG--DFEKILERVK 68 (223)
T ss_dssp CEEEEEEEECCTTHHHHHHHHCC----CEEEEEEEECCSSTTTTEE--EEEEEECSS--CHHHHHHHHH
T ss_pred eEEEEEEEcCCCCHHHHHHHHHHHcCCCceEEEEEccccCCcCCEE--EEEEEECCC--CHHHHHHHHh
Confidence 46789999999999999999999999999999998864 332 222777765 7777776664
No 54
>2jhe_A Transcription regulator TYRR; aromatic hydrocarbons catabolism, TYRR protei nucleotide-binding, transcription regulation, activator; HET: PG4; 2.30A {Escherichia coli}
Probab=79.10 E-value=3.5 Score=36.42 Aligned_cols=35 Identities=14% Similarity=0.108 Sum_probs=32.9
Q ss_pred EEEEEecCCCChHHHHHHHHHhCCceEEEEEEEee
Q 046178 449 MIRVQSENVNHPAAKLMSSLRDLDLQLHHASMSCV 483 (515)
Q Consensus 449 ~I~I~C~~r~glL~~Im~aLeeL~LdV~~a~~S~~ 483 (515)
-|+|.|.+|.|++.+|+++|.+.++++..+++...
T Consensus 2 ~~~v~~~dr~g~l~~i~~~l~~~~~ni~~~~~~~~ 36 (190)
T 2jhe_A 2 RLEVFCEDRLGLTRELLDLLVLRGIDLRGIEIDPI 36 (190)
T ss_dssp EEEEEECSCTTHHHHHHHHHHHTTCCEEEEEEETT
T ss_pred EEEEEEecCCcHHHHHHHHHHHcCCCeEEEEEecC
Confidence 48899999999999999999999999999999766
No 55
>2pc6_A Probable acetolactate synthase isozyme III (small; regulatory subunit, structural genomi protein structure initiative; HET: MSE; 2.50A {Nitrosomonas europaea atcc 19718} SCOP: d.58.18.6 d.58.18.6
Probab=78.04 E-value=1.8 Score=39.87 Aligned_cols=62 Identities=11% Similarity=0.116 Sum_probs=45.5
Q ss_pred EEEEEEecCCCChHHHHHHHHHhCCceEEEEEEEeeC--CEEEEEEEEEcCCCCCCHHHHHHHHHH
Q 046178 448 AMIRVQSENVNHPAAKLMSSLRDLDLQLHHASMSCVN--DLMLQDIVVRVPDGLRTEDALRSALLR 511 (515)
Q Consensus 448 ~~I~I~C~~r~glL~~Im~aLeeL~LdV~~a~~S~~~--~~vl~~i~vkv~~~~~s~e~L~~aL~~ 511 (515)
-.|.|...+++|.|.+|...|.+.|+++.+.++.... +...-+|++. .+ .-..++|.+.|.+
T Consensus 5 ~~IsV~veNrpGvL~rI~~lfs~rg~NI~Sl~v~~t~d~g~sritivV~-~d-~~~leql~kQL~K 68 (165)
T 2pc6_A 5 HIISLLMENEAGALSRVAGLFSARGYNIESLSVAPTEDPTLSRMTLVTN-GP-DEIVEQITKQLNK 68 (165)
T ss_dssp EEEEEEEECSTTHHHHHHHHHHHHTCCCCEEEEEECSSTTEEEEEEEEE-EC-HHHHHHHHHHHHH
T ss_pred EEEEEEEeCCCcHHHHHHHHHHHCCCcEEEEEEEecCCCCEEEEEEEEe-cc-HHHHHHHHHHhcC
Confidence 3578899999999999999999999999999887654 4555666665 22 2234455555543
No 56
>1ykd_A Adenylate cyclase; GAF domain, bound cyclic AMP ligand, lyase; HET: CMP; 1.90A {Anabaena SP}
Probab=75.71 E-value=0.98 Score=45.45 Aligned_cols=61 Identities=16% Similarity=0.107 Sum_probs=44.1
Q ss_pred eeCCCCCccceEeeCCCeeeeeCCCCcCc-CcchhHHHHh-hcCCceEEEEecC--C----ceEeeccc
Q 046178 139 SFGAGVGIPGRAQSSGSLVWLTGSHELQF-YNCERAKEAQ-SHGIETFVCIPTS--C----GVLELGSS 199 (515)
Q Consensus 139 sf~~g~GlpG~a~~sg~~~Wl~~~~~~~~-~~~~r~~~a~-~~giqTivciP~~--~----GVvELGSt 199 (515)
.++.|.|+.|.++.+|+++++.+....+. ..|.+..... ..++++++|||+. + |||.+...
T Consensus 75 ~~~~~~g~~g~v~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~s~l~vPl~~~~g~~iGvl~l~~~ 143 (398)
T 1ykd_A 75 RIPADKGIAGEVATFKQVVNIPFDFYHDPRSIFAQKQEKITGYRTYTMLALPLLSEQGRLVAVVQLLNK 143 (398)
T ss_dssp EEETTSHHHHHHHHHCCCEEECSCGGGSGGGHHHHHHHHHHCCCCSCEEEEEEECSSCCEEEEEEEEEE
T ss_pred ecCCCCchhhhhhccCcEEeccchhcccchhhcccccCcccCcCCceEEEEEEECCCCCEEEEEEEecc
Confidence 57889999999999999999988655321 2233333222 3578999999983 2 68888765
No 57
>3p01_A Two-component response regulator; PSI-2, midwest center for structural genomics, protein struc initiative, MCSG, signali protein; 2.65A {Nostoc SP}
Probab=74.50 E-value=0.93 Score=40.39 Aligned_cols=71 Identities=23% Similarity=0.291 Sum_probs=46.2
Q ss_pred CCCccceEeeCCCeeeeeCCCCcCcCcchhHHHHhhcCCceEEEEec-----CCceEeecccccc---ccChhHHHHHHH
Q 046178 143 GVGIPGRAQSSGSLVWLTGSHELQFYNCERAKEAQSHGIETFVCIPT-----SCGVLELGSSDLI---RENWGLVHQVKS 214 (515)
Q Consensus 143 g~GlpG~a~~sg~~~Wl~~~~~~~~~~~~r~~~a~~~giqTivciP~-----~~GVvELGSt~~v---~E~~~lv~~ik~ 214 (515)
+.|+.|+++.+|+++.+.+....+ .+...-.....|++.++|||+ .-|||.+.+...- .+|..|++.+-.
T Consensus 94 ~~~~~~~~~~~~~~~~i~d~~~~~--~~~~~~~~~~~~~~s~l~vPL~~~~~~~GvL~l~~~~~~~f~~~d~~ll~~lA~ 171 (184)
T 3p01_A 94 QDPLTNEAIATGQIQVAANIAKDP--KLASISQYQDNGIQSHVVIPITYRNEMLGVLSLQWQQPISLREDELTLIHLSAQ 171 (184)
T ss_dssp GCHHHHHHHHHCSCEEESCGGGCH--HHHTCHHHHHHTCCEEEEEEEEETTEEEEEEEEEESSCCCCCHHHHHHHHHHHH
T ss_pred CCcHHHHHHhhCCeEEEeccccCc--cccchhHHHHhCccEEEEEEEEECCEEEEEEEeCcCCCCCCCHHHHHHHHHHHH
Confidence 367889999999999988754432 222222233469999999998 3489999665432 235556555544
Q ss_pred H
Q 046178 215 L 215 (515)
Q Consensus 215 ~ 215 (515)
.
T Consensus 172 q 172 (184)
T 3p01_A 172 L 172 (184)
T ss_dssp H
T ss_pred H
Confidence 3
No 58
>2fgc_A Acetolactate synthase, small subunit; regulatory subunit, structural genomi protein structure initiative; 2.30A {Thermotoga maritima} SCOP: d.58.18.6 d.58.18.6
Probab=74.43 E-value=5.4 Score=37.62 Aligned_cols=62 Identities=10% Similarity=0.094 Sum_probs=47.5
Q ss_pred EEEEEEecCCCChHHHHHHHHHhCCceEEEEEEEeeC--CEEEEEEEEEcCCCCCCHHHHHHHHHH
Q 046178 448 AMIRVQSENVNHPAAKLMSSLRDLDLQLHHASMSCVN--DLMLQDIVVRVPDGLRTEDALRSALLR 511 (515)
Q Consensus 448 ~~I~I~C~~r~glL~~Im~aLeeL~LdV~~a~~S~~~--~~vl~~i~vkv~~~~~s~e~L~~aL~~ 511 (515)
-.|.|.-++++|.|.+|...|...|+++.+..+.... +...-+|++.-. ....++|++.|.+
T Consensus 30 ~~LsVlVeN~pGvLaRItglfsrRG~NI~SLtV~~ted~gisRitIvV~g~--e~~ieqL~kQL~K 93 (193)
T 2fgc_A 30 HLVSMLVHNKPGVMRKVANLFARRGFNISSITVGESETPGLSRLVIMVKGD--DKTIEQIEKQAYK 93 (193)
T ss_dssp EEEEEEEECCTTHHHHHHHHHHTTTCEEEEEEEEECSSTTEEEEEEEEEEC--TTHHHHHHHHHTT
T ss_pred EEEEEEECCCChHHHHHHHHHHHCCceEEEEEeeccCCCCEEEEEEEEECC--HHHHHHHHHHhcC
Confidence 4577888999999999999999999999998887544 455566677533 2356777777654
No 59
>2k2n_A Sensor protein, SYB-CPH1(GAF); phytochrome, GAF domain, phycocyanobilin, PCB, bacteriophytochrome, cyanobacterial phytochrome, kinase; HET: CYC; NMR {Synechococcus SP} SCOP: d.110.2.1 PDB: 2kli_A* 2koi_A*
Probab=72.68 E-value=5.1 Score=35.18 Aligned_cols=70 Identities=14% Similarity=0.110 Sum_probs=45.3
Q ss_pred CCccce----EeeCCCeeeeeCCCCcCcCcchhHHHHhhcCCceEEEEec-----CCceEeeccccccc---cChhHHHH
Q 046178 144 VGIPGR----AQSSGSLVWLTGSHELQFYNCERAKEAQSHGIETFVCIPT-----SCGVLELGSSDLIR---ENWGLVHQ 211 (515)
Q Consensus 144 ~GlpG~----a~~sg~~~Wl~~~~~~~~~~~~r~~~a~~~giqTivciP~-----~~GVvELGSt~~v~---E~~~lv~~ 211 (515)
.|..|. ++.+|+++.+.+....+...+.+..+ ...|++.++|||+ .-|||.+.+...-. ++.++++.
T Consensus 78 ~~~~g~v~~~~~~~~~~~~i~d~~~~~~~~~~~~~~-~~~~~~s~l~vPi~~~~~l~G~l~~~~~~~~~~~~~e~~~l~~ 156 (172)
T 2k2n_A 78 AQSRSISQPESWGLSARVPLGEPLQRPVDPCHVHYL-KSMGVASSLVVPLMHHQELWGLLVSHHAEPRPYSQEELQVVQL 156 (172)
T ss_dssp GCCCCCSCCCSCCCSSCCCCCSSSSCCCCHHHHHHH-HTTTCSEEEECCCSCSSCCCEEEEEEECSCCCCCHHHHHHHHH
T ss_pred ccccccccccccccCCceeccchhhcCCCHHHHHHH-HhcCCeEEEEEEEEECCEEEEEEEEEeCCCCCCCHHHHHHHHH
Confidence 455444 58999999999876554444333333 3579999999998 45899988764322 23344444
Q ss_pred HHH
Q 046178 212 VKS 214 (515)
Q Consensus 212 ik~ 214 (515)
+-.
T Consensus 157 la~ 159 (172)
T 2k2n_A 157 LAD 159 (172)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 60
>3o5y_A Sensor protein; GAF domain, histidine, kinase, PSI, MCSG, structural genomics, midwest center for structural genomics, protein S initiative; 2.45A {Bacillus halodurans}
Probab=71.42 E-value=4 Score=36.66 Aligned_cols=76 Identities=13% Similarity=0.193 Sum_probs=51.0
Q ss_pred eeCCCCCccceEeeCCCeeeeeCCCCcCcCcchhHHHHhhcCCceEEEEec-----CCceEeecccccc---ccChhHHH
Q 046178 139 SFGAGVGIPGRAQSSGSLVWLTGSHELQFYNCERAKEAQSHGIETFVCIPT-----SCGVLELGSSDLI---RENWGLVH 210 (515)
Q Consensus 139 sf~~g~GlpG~a~~sg~~~Wl~~~~~~~~~~~~r~~~a~~~giqTivciP~-----~~GVvELGSt~~v---~E~~~lv~ 210 (515)
.++.+.++.|+++.+|+++=+.... +...|.....+...|++.++|+|+ .-|||-|++...- .+|..+++
T Consensus 54 ~ip~~~s~~~~v~~~~~~~v~~~~~--~~~~~~~~~~~~~~~~~S~l~vPL~~~~~~iGvl~l~~~~~~~f~~~d~~~l~ 131 (165)
T 3o5y_A 54 TIPKEQSLYWSALDQRQTIFRSLTD--TQDNFYEKQYLAILDLKSILVIPIYSKNKRVGVLSIGRKQQIDWSLDDLAFLE 131 (165)
T ss_dssp EECSTTCHHHHHHHHTSCEEEESCC--TTCCCTTHHHHHTTTCCEEEEEEEECSSCEEEEEEEEESSCCCCCHHHHHHHH
T ss_pred ccCCccCHHHHHHHhCCeEEEcCcc--cccccccchHHHhhCCCEEEEeCeeECCEEEEEEEEEeCCCCCCCHHHHHHHH
Confidence 4677788899999999998543222 122333333456689999999998 4479999987643 24555666
Q ss_pred HHHHHh
Q 046178 211 QVKSLF 216 (515)
Q Consensus 211 ~ik~~F 216 (515)
.+-+..
T Consensus 132 ~la~~~ 137 (165)
T 3o5y_A 132 QLTDHL 137 (165)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 655544
No 61
>2lb5_A Sensor histidine kinase; PCB, transferase, GAF domain, phosphoprotein; HET: CYC; NMR {Synechococcus SP} PDB: 2lb9_A*
Probab=70.09 E-value=5.6 Score=35.90 Aligned_cols=75 Identities=13% Similarity=0.106 Sum_probs=49.1
Q ss_pred CCCCccce----EeeCCCeeeeeCCCCcCcCcchhHHHHhhcCCceEEEEec-----CCceEeecccccc---ccChhHH
Q 046178 142 AGVGIPGR----AQSSGSLVWLTGSHELQFYNCERAKEAQSHGIETFVCIPT-----SCGVLELGSSDLI---RENWGLV 209 (515)
Q Consensus 142 ~g~GlpG~----a~~sg~~~Wl~~~~~~~~~~~~r~~~a~~~giqTivciP~-----~~GVvELGSt~~v---~E~~~lv 209 (515)
.++|..|. ++.+|+|+-+.+....+...+.+..+ ...|++.++|||+ .-|||.+.+...- .++.+++
T Consensus 106 ~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~l-~~~~~~S~l~vPi~~~~~l~GvL~~~~~~~~~~~~~e~~ll 184 (208)
T 2lb5_A 106 VEAQSRSISQPESWGLSARVPLGEPLQRPVDPCHVHYL-KSMGVASSLVVPLMHHQELWGLLVSHHAEPRPYSQEELQVV 184 (208)
T ss_dssp GGGCCCCCCCSSCCCCCSCCCCCSCSSCCCCHHHHHHH-HHTTCSEEEEEEEEETTEEEEEEEEEESCCCCCCHHHHHHH
T ss_pred cccccccccccccccccccccccchhhccCCHHHHHHH-HhcCCcEEEEEEEEECCEeEEEEEEeeCCCCCCCHHHHHHH
Confidence 34555554 78999999888766544344444433 3579999999998 3489998886432 2345566
Q ss_pred HHHHHHhc
Q 046178 210 HQVKSLFG 217 (515)
Q Consensus 210 ~~ik~~F~ 217 (515)
+.+-..+.
T Consensus 185 ~~la~~~a 192 (208)
T 2lb5_A 185 QLLADQVS 192 (208)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66655543
No 62
>3ibj_A CGMP-dependent 3',5'-cyclic phosphodiesterase; PDE2A, GAF-domains, allosteric regulation hydrolase, membrane; 3.02A {Homo sapiens}
Probab=68.59 E-value=1.4 Score=48.65 Aligned_cols=70 Identities=13% Similarity=0.132 Sum_probs=46.5
Q ss_pred eeCCCCCccceEeeCCCeeeeeCCCCcCcCcchhHHHHhhcCCceEEEEec-CC------ceEeeccccc----cccChh
Q 046178 139 SFGAGVGIPGRAQSSGSLVWLTGSHELQFYNCERAKEAQSHGIETFVCIPT-SC------GVLELGSSDL----IRENWG 207 (515)
Q Consensus 139 sf~~g~GlpG~a~~sg~~~Wl~~~~~~~~~~~~r~~~a~~~giqTivciP~-~~------GVvELGSt~~----v~E~~~ 207 (515)
.++.| |+.|+++.+|+|+++.+....+ .+... ......+++++|+|+ .+ |||.+..... -.+|..
T Consensus 76 ~~p~~-Gi~g~v~~~~~pv~i~d~~~~~--~~~~~-~~~~~~~~S~L~vPI~~~~~g~viGvL~l~~~~~~~~ft~~d~~ 151 (691)
T 3ibj_A 76 SFPLT-GCLGQVVEDKKSIQLKDLTSED--VQQLQ-SMLGCELQAMLCVPVISRATDQVVALACAFNKLEGDLFTDEDEH 151 (691)
T ss_dssp EEECC-SSSHHHHHHCCCEEGGGSCHHH--HHHHH-HHHTSCCSCEEEEEEECSSSCSEEEEEEEESBSSSCCCCTTHHH
T ss_pred ecCCc-cHHHHHHHHCCeEEeccchhcc--ccccc-cccCCccceEEEEEeEcCCCCcEEEEEEEEcCCCCCCCCHHHHH
Confidence 68899 9999999999999998755321 11111 112256899999998 33 7888765422 344566
Q ss_pred HHHHH
Q 046178 208 LVHQV 212 (515)
Q Consensus 208 lv~~i 212 (515)
+++.+
T Consensus 152 lL~~l 156 (691)
T 3ibj_A 152 VIQHC 156 (691)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66654
No 63
>3bjc_A CGMP-specific 3',5'-cyclic phosphodiesterase; PDE5, erectIle dysfunction, inhibitor design, allosteric enzyme, alternative splicing, CGMP binding; HET: WAN; 2.00A {Homo sapiens} SCOP: a.211.1.2 PDB: 3mf0_A 3lfv_A 2xss_A 2k31_A*
Probab=66.49 E-value=1.2 Score=50.83 Aligned_cols=78 Identities=13% Similarity=0.161 Sum_probs=0.0
Q ss_pred eeeCCCCCccceEeeCCCeeeeeCCCCcCcCcchhHHH-HhhcCCceEEEEecCC------ceEeeccccc------ccc
Q 046178 138 RSFGAGVGIPGRAQSSGSLVWLTGSHELQFYNCERAKE-AQSHGIETFVCIPTSC------GVLELGSSDL------IRE 204 (515)
Q Consensus 138 ~sf~~g~GlpG~a~~sg~~~Wl~~~~~~~~~~~~r~~~-a~~~giqTivciP~~~------GVvELGSt~~------v~E 204 (515)
..|+.|.|+.|.++.+|+++++.+....+ .|..... ....++++++|+|+.. |||.+.+... -.+
T Consensus 224 ~~~p~~~gi~g~v~~~g~pv~I~D~~~dp--~f~~~~~~~~~~~~~S~L~vPL~~~~g~viGvL~l~~~~~~~~~~ft~~ 301 (878)
T 3bjc_A 224 IRLEWNKGIVGHVAALGEPLNIKDAYEDP--RFNAEVDQITGYKTQSILCMPIKNHREEVVGVAQAINKKSGNGGTFTEK 301 (878)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred eeeeCCccHHHHHHhcCceEEeCCcccCc--ccccccccccCCccceEEEEeeEcCCCCEEEEEEEEecCCCCCCCCCHH
Confidence 35889999999999999999999765432 2222211 1234688999999844 7999886542 245
Q ss_pred ChhHHHHHHHHhc
Q 046178 205 NWGLVHQVKSLFG 217 (515)
Q Consensus 205 ~~~lv~~ik~~F~ 217 (515)
|..+++.+-..+.
T Consensus 302 D~~lL~~lA~~~a 314 (878)
T 3bjc_A 302 DEKDFAAYLAFCG 314 (878)
T ss_dssp -------------
T ss_pred HHHHHHHHHHHHH
Confidence 6666666655554
No 64
>3bjc_A CGMP-specific 3',5'-cyclic phosphodiesterase; PDE5, erectIle dysfunction, inhibitor design, allosteric enzyme, alternative splicing, CGMP binding; HET: WAN; 2.00A {Homo sapiens} SCOP: a.211.1.2 PDB: 3mf0_A 3lfv_A 2xss_A 2k31_A*
Probab=62.67 E-value=1.6 Score=49.88 Aligned_cols=77 Identities=10% Similarity=0.091 Sum_probs=0.0
Q ss_pred eeeCCCCCccceEeeCCCeeeeeCCCCcCcCcchhHHHHhh----cCCceEEEEec-CC------ceEeeccccc-----
Q 046178 138 RSFGAGVGIPGRAQSSGSLVWLTGSHELQFYNCERAKEAQS----HGIETFVCIPT-SC------GVLELGSSDL----- 201 (515)
Q Consensus 138 ~sf~~g~GlpG~a~~sg~~~Wl~~~~~~~~~~~~r~~~a~~----~giqTivciP~-~~------GVvELGSt~~----- 201 (515)
..++.|.|+.|+++.+|+++++.+....+ .|.+...... .+++.++|+|+ .. |||+|.....
T Consensus 406 ~~~p~~~gi~g~v~~~g~~v~i~D~~~d~--r~~~~~~~~~g~~~~~~rS~L~vPL~~~~~g~viGVL~l~~~~~~~~G~ 483 (878)
T 3bjc_A 406 DANKINYMYAQYVKNTMEPLNIPDVSKDK--RFPWTTENTGNVNQQCIRSLLCTPIKNGKKNKVIGVCQLVNKMEENTGK 483 (878)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccchhhhHHHHHhhcCCeeeecCccccc--ccccccccccCccccccceEEEEEEecCCCCcEEEEEEEEEcCCCcccC
Confidence 35788899999999999999998765432 2333222211 46999999998 22 8899976543
Q ss_pred ----cccChhHHHHHHHHh
Q 046178 202 ----IRENWGLVHQVKSLF 216 (515)
Q Consensus 202 ----v~E~~~lv~~ik~~F 216 (515)
-.+|..+++.+-...
T Consensus 484 ~~~Ft~~d~~lL~~lA~~a 502 (878)
T 3bjc_A 484 VKPFNRNDEQFLEAFVIFC 502 (878)
T ss_dssp -------------------
T ss_pred CCCCCHHHHHHHHHHHHHH
Confidence 233555555544433
No 65
>2f06_A Conserved hypothetical protein; structural genomics hypothetical protein, PSI, protein struc initiative; HET: MSE HIS; 2.10A {Bacteroides thetaiotaomicron} SCOP: d.58.18.11 d.58.18.11
Probab=60.50 E-value=48 Score=28.49 Aligned_cols=56 Identities=16% Similarity=0.068 Sum_probs=38.6
Q ss_pred EEEEecCCCChHHHHHHHHHhCCceEEEEEEEeeCCEEEEEEEEEcCCCCCCHHHHHHHHHH
Q 046178 450 IRVQSENVNHPAAKLMSSLRDLDLQLHHASMSCVNDLMLQDIVVRVPDGLRTEDALRSALLR 511 (515)
Q Consensus 450 I~I~C~~r~glL~~Im~aLeeL~LdV~~a~~S~~~~~vl~~i~vkv~~~~~s~e~L~~aL~~ 511 (515)
|-+.-+.++|.+.+++++|.+.|+.+...-++..++.....|.. . +.+...++|.+
T Consensus 75 v~v~~~d~pGvla~i~~~L~~~~InI~~~~~~~~~~~~~~~i~~--~----d~~~A~~~L~~ 130 (144)
T 2f06_A 75 VGISCPNVPGALAKVLGFLSAEGVFIEYMYSFANNNVANVVIRP--S----NMDKCIEVLKE 130 (144)
T ss_dssp EEEEEESSTTHHHHHHHHHHHTTCCEEEEEEEEETTEEEEEEEE--S----CHHHHHHHHHH
T ss_pred EEEEeCCCCcHHHHHHHHHHHCCCCEEEEEEEccCCcEEEEEEe--C----CHHHHHHHHHH
Confidence 55567899999999999999999999765444234444433433 2 55666666654
No 66
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=56.25 E-value=29 Score=26.42 Aligned_cols=44 Identities=16% Similarity=0.241 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHhccCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 046178 348 ERQRREKLNHRFYALRAVVPNVSRMDKASLLSDAVSYIRELKVKIDDLESQLLQRES 404 (515)
Q Consensus 348 ER~RR~kln~~f~~LrslvP~~~k~dKasIL~daI~YIk~Lq~~v~~Le~~~~~~~s 404 (515)
||++|.+...+..+.++ =..-..|+..|+.+++.|+.+...+..
T Consensus 1 Ekr~rrrerNR~AA~rc-------------R~rKk~~~~~Le~~v~~L~~~n~~L~~ 44 (63)
T 2wt7_A 1 EKRRIRRERNKMAAAKC-------------RNRRRELTDTLQAETDQLEDEKSALQT 44 (63)
T ss_dssp CHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHhHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56666677788888776 233567888888888888877765543
No 67
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=45.80 E-value=22 Score=25.23 Aligned_cols=23 Identities=30% Similarity=0.580 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhh
Q 046178 383 SYIRELKVKIDDLESQLLQRESK 405 (515)
Q Consensus 383 ~YIk~Lq~~v~~Le~~~~~~~sk 405 (515)
.|+.+|+.++++|+....+++.+
T Consensus 3 aYl~eLE~r~k~le~~naeLEer 25 (42)
T 2oqq_A 3 AYLSELENRVKDLENKNSELEER 25 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHH
Confidence 48889999999999888777653
No 68
>2f06_A Conserved hypothetical protein; structural genomics hypothetical protein, PSI, protein struc initiative; HET: MSE HIS; 2.10A {Bacteroides thetaiotaomicron} SCOP: d.58.18.11 d.58.18.11
Probab=42.83 E-value=1.1e+02 Score=26.02 Aligned_cols=56 Identities=16% Similarity=0.140 Sum_probs=38.4
Q ss_pred EEEEEecCCCChHHHHHHHHHhCCceEEEEEEEeeCCEEEEEEEEEcCCCCCCHHHHHHHHH
Q 046178 449 MIRVQSENVNHPAAKLMSSLRDLDLQLHHASMSCVNDLMLQDIVVRVPDGLRTEDALRSALL 510 (515)
Q Consensus 449 ~I~I~C~~r~glL~~Im~aLeeL~LdV~~a~~S~~~~~vl~~i~vkv~~~~~s~e~L~~aL~ 510 (515)
.|.|.-++++|.+.+|..+|.+.|+.|.........+.-+-.|. + .+.+..++.|.
T Consensus 8 ~i~v~v~d~~G~l~~i~~~la~~~inI~~i~~~~~~~~~~~~~~--~----~d~~~a~~~L~ 63 (144)
T 2f06_A 8 QLSIFLENKSGRLTEVTEVLAKENINLSALCIAENADFGILRGI--V----SDPDKAYKALK 63 (144)
T ss_dssp EEEEEECSSSSHHHHHHHHHHHTTCCEEEEEEEECSSCEEEEEE--E----SCHHHHHHHHH
T ss_pred EEEEEecCCCcHHHHHHHHHHHCCCCEEEEEEEecCCCCEEEEE--e----CCHHHHHHHHH
Confidence 46677789999999999999999999998776644442211222 2 24566666654
No 69
>1zme_C Proline utilization transcription activator; complex (transcription regulation/DNA), PUT3, Zn2Cys6, binuclear cluster; HET: DNA 5IU; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 1ajy_A
Probab=36.57 E-value=30 Score=26.02 Aligned_cols=23 Identities=13% Similarity=0.338 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Q 046178 382 VSYIRELKVKIDDLESQLLQRES 404 (515)
Q Consensus 382 I~YIk~Lq~~v~~Le~~~~~~~s 404 (515)
-.||..|+.+++.||..+..+.+
T Consensus 43 ~~~~~~L~~ri~~Le~~l~~l~~ 65 (70)
T 1zme_C 43 TKYLQQLQKDLNDKTEENNRLKA 65 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 35899999999999998877765
No 70
>2l5g_A GPS2 protein, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=31.79 E-value=68 Score=22.19 Aligned_cols=31 Identities=23% Similarity=0.222 Sum_probs=26.0
Q ss_pred CChhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 046178 372 MDKASLLSDAVSYIRELKVKIDDLESQLLQR 402 (515)
Q Consensus 372 ~dKasIL~daI~YIk~Lq~~v~~Le~~~~~~ 402 (515)
|..+.-|+++=+-|.+|+.+++.|+.++-++
T Consensus 4 ~ee~mTLeEtkeQi~~l~~kl~~LkeEKHQL 34 (38)
T 2l5g_A 4 MEERMSLEETKEQILKLEEKLLALQEEKHQL 34 (38)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456779999999999999999999988554
No 71
>3he4_B Synzip5; heterodimeric coiled-coil, de novo protein; 2.46A {Artificial gene}
Probab=31.02 E-value=77 Score=22.09 Aligned_cols=25 Identities=20% Similarity=0.317 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 046178 378 LSDAVSYIRELKVKIDDLESQLLQR 402 (515)
Q Consensus 378 L~daI~YIk~Lq~~v~~Le~~~~~~ 402 (515)
+.+--+||++|+++-.+|+.-++.+
T Consensus 5 vkelknyiqeleernaelknlkehl 29 (46)
T 3he4_B 5 VKELKNYIQELEERNAELKNLKEHL 29 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHhHHHHH
Confidence 4556689999999888888766544
No 72
>2re1_A Aspartokinase, alpha and beta subunits; structural genomics, protein structure initiative, midwest center for structural genomics; 2.75A {Neisseria meningitidis MC58}
Probab=30.84 E-value=2e+02 Score=25.36 Aligned_cols=39 Identities=13% Similarity=0.062 Sum_probs=31.0
Q ss_pred EEEeCCeEEEEEEecC---CCChHHHHHHHHHhCCceEEEEE
Q 046178 441 TKIMGSDAMIRVQSEN---VNHPAAKLMSSLRDLDLQLHHAS 479 (515)
Q Consensus 441 V~i~g~e~~I~I~C~~---r~glL~~Im~aLeeL~LdV~~a~ 479 (515)
|....+-+.|.|.... .+|.+.+++++|.+.++.|...+
T Consensus 97 i~~~~~~a~vsvvG~~m~~~~Gv~a~i~~aL~~~~InI~~is 138 (167)
T 2re1_A 97 IDGDDTVCKVSAVGLGMRSHVGVAAKIFRTLAEEGINIQMIS 138 (167)
T ss_dssp EEEESSEEEEEEECSSCTTCCCHHHHHHHHHHHTTCCCCEEE
T ss_pred EEecCCEEEEEEECCCcCCCcCHHHHHHHHHHHCCCcEEEEE
Confidence 4445566778877765 78999999999999999998854
No 73
>2er8_A Regulatory protein Leu3; Zn(2)Cys(6) binuclear cluster motif, transcription activator/DNA complex; 2.85A {Saccharomyces cerevisiae} PDB: 2ere_A 2erg_A
Probab=28.67 E-value=31 Score=26.18 Aligned_cols=21 Identities=10% Similarity=0.175 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 046178 383 SYIRELKVKIDDLESQLLQRE 403 (515)
Q Consensus 383 ~YIk~Lq~~v~~Le~~~~~~~ 403 (515)
.||..|+++|++|+..+..+.
T Consensus 49 ~~~~~Le~ri~~Le~~l~~l~ 69 (72)
T 2er8_A 49 ARNEAIEKRFKELTRTLTNLT 69 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHCC-
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 899999999999999886543
No 74
>2qmw_A PDT, prephenate dehydratase; APC85812, prephenate dehydratase (PDT), staphylococcus aureu aureus MU50, structural genomics, PSI-2; 2.30A {Staphylococcus aureus subsp} SCOP: c.94.1.1 d.58.18.3
Probab=28.28 E-value=1.2e+02 Score=29.75 Aligned_cols=63 Identities=5% Similarity=0.063 Sum_probs=47.8
Q ss_pred eEEEEEEe---cCCCChHHHHHHHHHhCCceEEEEEEEeeCCE-EEEEEEEEcCCCCCCHHHHHHHHHH
Q 046178 447 DAMIRVQS---ENVNHPAAKLMSSLRDLDLQLHHASMSCVNDL-MLQDIVVRVPDGLRTEDALRSALLR 511 (515)
Q Consensus 447 e~~I~I~C---~~r~glL~~Im~aLeeL~LdV~~a~~S~~~~~-vl~~i~vkv~~~~~s~e~L~~aL~~ 511 (515)
...|-+.. ++++|.|.++|..|...|++.....+-...+. .-|.|.+.+. . ...+.+++||..
T Consensus 186 ktsl~f~~~~~~~~pGaL~~~L~~Fa~~gINLtkIESRP~~~~~~~Y~FfiD~e-~-~~d~~v~~aL~~ 252 (267)
T 2qmw_A 186 ATSLMFLITPMHDKPGLLASVLNTFALFNINLSWIESRPLKTQLGMYRFFVQAD-S-AITTDIKKVIAI 252 (267)
T ss_dssp CSEEEEEEEESSCCTTHHHHHHHHHHTTTCCEEEEEEEECSSSTTCEEEEEEES-C-CSCHHHHHHHHH
T ss_pred eEEEEEEcCCCCCCcChHHHHHHHHHHcCCCeeEEEEeecCCCCccEEEEEEEe-c-CCcHHHHHHHHH
Confidence 44555666 78999999999999999999999999877663 4567777877 3 344567776653
No 75
>2re1_A Aspartokinase, alpha and beta subunits; structural genomics, protein structure initiative, midwest center for structural genomics; 2.75A {Neisseria meningitidis MC58}
Probab=24.98 E-value=1.4e+02 Score=26.33 Aligned_cols=41 Identities=12% Similarity=0.183 Sum_probs=33.3
Q ss_pred EEEeCCeEEEEEEe-cCCCChHHHHHHHHHhCCceEEEEEEE
Q 046178 441 TKIMGSDAMIRVQS-ENVNHPAAKLMSSLRDLDLQLHHASMS 481 (515)
Q Consensus 441 V~i~g~e~~I~I~C-~~r~glL~~Im~aLeeL~LdV~~a~~S 481 (515)
|....+.++|.|.. +.++|.+.+|+.+|.+.++.|.....+
T Consensus 19 Ia~~~~~~~i~v~~~~~~~G~~~~if~~La~~~Invd~i~~s 60 (167)
T 2re1_A 19 IAFDKNQARINVRGVPDKPGVAYQILGAVADANIEVDMIIQN 60 (167)
T ss_dssp EEEECCCEEEEEEEEECCTTHHHHHHHHHHTTTCCCCCEEEC
T ss_pred EEecCCEEEEEEecCCCCcCHHHHHHHHHHHcCCeEEEEEcC
Confidence 44556778888885 788999999999999999998876544
No 76
>3a98_B Engulfment and cell motility protein 1; protein-protein complex, DOCK2, ELMO1, SH3 domain, PH domain bundle, proline-rich sequence, cytoskeleton; 2.10A {Homo sapiens} PDB: 2vsz_A
Probab=24.96 E-value=42 Score=31.64 Aligned_cols=32 Identities=28% Similarity=0.341 Sum_probs=24.2
Q ss_pred HHHHHHHHHccCCCCcEEE----------EeeecccCCCCCCcceEEcc
Q 046178 26 LQQRLQFIVQSQPEWWAYA----------IFWQTISNDDNGQLFLAWGD 64 (515)
Q Consensus 26 Lq~~L~~lv~~~~~~W~YA----------IFWq~~s~~~~g~~vL~WgD 64 (515)
-+|||+.|++| .|=+. .||++ +++ ...|-|+|
T Consensus 25 keQRi~~L~~G---~~F~k~~~~r~~~k~~f~rL-s~n---~k~L~y~d 66 (203)
T 3a98_B 25 KQQRLNRLVEG---TCFRKLNARRRQDKFWYCRL-SPN---HKVLHYGD 66 (203)
T ss_dssp HHHHHHHHHHC---EEEECSSCCTTCCSEEEEEE-CTT---SSEEEEEE
T ss_pred HHHHHHHHHCC---CeEeccCCccccCceEEEEE-CCC---CceEEEcc
Confidence 47899999987 45322 48999 754 77999998
No 77
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=24.48 E-value=70 Score=23.76 Aligned_cols=22 Identities=23% Similarity=0.320 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh
Q 046178 383 SYIRELKVKIDDLESQLLQRES 404 (515)
Q Consensus 383 ~YIk~Lq~~v~~Le~~~~~~~s 404 (515)
.||.+|+.+|..|+.+...+..
T Consensus 22 ~~~~~LE~~v~~L~~eN~~L~~ 43 (55)
T 1dh3_A 22 EYVKSLENRVAVLENQNKTLIE 43 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 7999999999999998866543
No 78
>2dtj_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; HET: CIT; 1.58A {Corynebacterium glutamicum} PDB: 3aaw_B* 3ab2_B 3ab4_B*
Probab=23.86 E-value=2.1e+02 Score=25.61 Aligned_cols=41 Identities=20% Similarity=0.220 Sum_probs=31.3
Q ss_pred EEEeCCeEEEEEE-ecCCCChHHHHHHHHHhCCceEEEEEEE
Q 046178 441 TKIMGSDAMIRVQ-SENVNHPAAKLMSSLRDLDLQLHHASMS 481 (515)
Q Consensus 441 V~i~g~e~~I~I~-C~~r~glL~~Im~aLeeL~LdV~~a~~S 481 (515)
|....+.++|.|. -+.++|.+.+|+++|.+.++.|.....+
T Consensus 9 Ia~~~~~~~Itv~~~~~~~G~~a~if~~La~~~InId~i~~s 50 (178)
T 2dtj_A 9 VATDKSEAKVTVLGISDKPGEAAKVFRALADAEINIDMVLQN 50 (178)
T ss_dssp EEEECSEEEEEEEEEECSTTHHHHHHHHHHHTTCCCCEEEEC
T ss_pred EEecCCEEEEEEecCCCCccHHHHHHHHHHHcCCCEEEEEcC
Confidence 3445677788884 4788999999999999999666655444
No 79
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=23.34 E-value=1.7e+02 Score=23.79 Aligned_cols=25 Identities=16% Similarity=0.282 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 046178 378 LSDAVSYIRELKVKIDDLESQLLQR 402 (515)
Q Consensus 378 L~daI~YIk~Lq~~v~~Le~~~~~~ 402 (515)
|.+|++=-++|+.+|..|+.++..+
T Consensus 41 L~eaL~EN~~Lh~~ie~l~eEi~~l 65 (83)
T 1uii_A 41 LYEALKENEKLHKEIEQKDNEIARL 65 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6777777777887777777776544
No 80
>2qmx_A Prephenate dehydratase; APC86053, L-Phe inhibition, PDT, CHL tepidum TLS, structural genomics, PSI-2, protein structure initiative; HET: PHE; 2.30A {Chlorobium tepidum tls}
Probab=22.04 E-value=2.4e+02 Score=27.67 Aligned_cols=63 Identities=10% Similarity=0.020 Sum_probs=46.8
Q ss_pred EEEEEEecCCCChHHHHHHHHHhCCceEEEEEEEeeCCE-EEEEEEEEcCCCCCCHHHHHHHHHH
Q 046178 448 AMIRVQSENVNHPAAKLMSSLRDLDLQLHHASMSCVNDL-MLQDIVVRVPDGLRTEDALRSALLR 511 (515)
Q Consensus 448 ~~I~I~C~~r~glL~~Im~aLeeL~LdV~~a~~S~~~~~-vl~~i~vkv~~~~~s~e~L~~aL~~ 511 (515)
..|-+.-++++|.|.++|..|...|++.....+-...+. .-|.|.+.+... ...+.++.||..
T Consensus 201 tsl~f~~~~~pGaL~~~L~~Fa~~gINLtkIESRP~~~~~~~Y~FfvD~eg~-~~d~~v~~aL~~ 264 (283)
T 2qmx_A 201 TSIVFALPNEQGSLFRALATFALRGIDLTKIESRPSRKKAFEYLFYADFIGH-REDQNVHNALEN 264 (283)
T ss_dssp EEEEEEEECCTTHHHHHHHHHHTTTCCEEEEEEEECSSSTTEEEEEEEEESC-TTSHHHHHHHHH
T ss_pred EEEEEEcCCCCchHHHHHHHHHHcCCCeeEEEeeEcCCCCcceEEEEEEecC-CCcHHHHHHHHH
Confidence 344444578999999999999999999999999877663 456777777643 344567666643
No 81
>3ld7_A LIN0431 protein; DUF1312, PF07009, LKR112, NESG, structural genomics, PSI-2, protein structure initiative; 1.55A {Listeria innocua}
Probab=21.93 E-value=36 Score=28.57 Aligned_cols=49 Identities=10% Similarity=0.079 Sum_probs=31.2
Q ss_pred eeCCCCCccceEeeCCCeeeeeCCCCcCcCcchhHHHHhhcCCceEEEEec
Q 046178 139 SFGAGVGIPGRAQSSGSLVWLTGSHELQFYNCERAKEAQSHGIETFVCIPT 189 (515)
Q Consensus 139 sf~~g~GlpG~a~~sg~~~Wl~~~~~~~~~~~~r~~~a~~~giqTivciP~ 189 (515)
.|....|..-..-..+.-+|+..++ ++.+.|.+.---. -.=|||||+|-
T Consensus 34 ~i~~~~G~~n~ieI~dg~vrv~es~-CPdkiCv~~GwIs-~~Gq~IVCLPn 82 (101)
T 3ld7_A 34 TIKGKGAQYNLMEVDGERIRIKEDN-SPDQVGVKMGWKS-KAGDTIVCLPH 82 (101)
T ss_dssp EEECSTTCEEEEEEETTEEEEEEEC-CSSCHHHHHCCBC-STTCEEEETTT
T ss_pred EEEcCCCCEEEEEEECCEEEEEECC-CCCcccccCCCcC-CCCCEEEEcCC
Confidence 3443344345677788889998766 5667887652221 13489999984
No 82
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=21.59 E-value=81 Score=24.74 Aligned_cols=21 Identities=10% Similarity=0.139 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 046178 382 VSYIRELKVKIDDLESQLLQR 402 (515)
Q Consensus 382 I~YIk~Lq~~v~~Le~~~~~~ 402 (515)
-.||++|+.+|.+|+.....+
T Consensus 28 ~~~i~~LE~~v~~le~~~~~l 48 (70)
T 1gd2_E 28 EDHLKALETQVVTLKELHSST 48 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 478999999999888766443
Done!