BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>046180
MNSSENTSYQAGQAKGQAQEKGNQMMDKVSNAAQSAKDSVQEAGNQMKAKAQGAADSVKN
TVGMNK

High Scoring Gene Products

Symbol, full name Information P value
AT5G38760 protein from Arabidopsis thaliana 3.1e-12
AT3G02480 protein from Arabidopsis thaliana 2.8e-11
AT5G53820 protein from Arabidopsis thaliana 4.1e-10
AT1G52680 protein from Arabidopsis thaliana 0.00027

Back to top

Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  046180
        (66 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2166630 - symbol:AT5G38760 "AT5G38760" species...   164  3.1e-12   1
TAIR|locus:2076844 - symbol:AT3G02480 "AT3G02480" species...   155  2.8e-11   1
TAIR|locus:2164012 - symbol:AT5G53820 "AT5G53820" species...   144  4.1e-10   1
TAIR|locus:2035134 - symbol:AT1G52680 "AT1G52680" species...    89  0.00027   1


>TAIR|locus:2166630 [details] [associations]
            symbol:AT5G38760 "AT5G38760" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0008150
            "biological_process" evidence=ND] [GO:0019953 "sexual reproduction"
            evidence=RCA] [GO:0048445 "carpel morphogenesis" evidence=RCA]
            EMBL:CP002688 EMBL:AB011478 EMBL:DQ447013 EMBL:BT026390
            IPI:IPI00529756 RefSeq:NP_198692.1 UniGene:At.30386 STRING:Q9FKR1
            PRIDE:Q9FKR1 EnsemblPlants:AT5G38760.1 GeneID:833867
            KEGG:ath:AT5G38760 TAIR:At5g38760 InParanoid:Q9FKR1 OMA:SQNISFQ
            PhylomeDB:Q9FKR1 ProtClustDB:CLSN2916648 Genevestigator:Q9FKR1
            Uniprot:Q9FKR1
        Length = 67

 Score = 164 (62.8 bits), Expect = 3.1e-12, P = 3.1e-12
 Identities = 33/65 (50%), Positives = 42/65 (64%)

Query:     2 NSSENTSYXXXXXXXXXXXXXXXMMDKVSNAAQSAKDSVQEAGNQMKAKAQGAADSVKNT 61
             ++S+N S+               MMDK SNAAQSAK+S++E G Q+K KAQGA +SVKN 
Sbjct:     3 SNSQNISFQAGQAKGQTQEKASTMMDKASNAAQSAKESLKETGQQIKEKAQGATESVKNA 62

Query:    62 VGMNK 66
              GMNK
Sbjct:    63 TGMNK 67


>TAIR|locus:2076844 [details] [associations]
            symbol:AT3G02480 "AT3G02480" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0009414
            "response to water deprivation" evidence=IEP] [GO:0009830 "cell
            wall modification involved in abscission" evidence=RCA]
            EMBL:AC021640 EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0009414
            HOGENOM:HOG000238205 EMBL:AY037243 EMBL:AY077649 IPI:IPI00519945
            RefSeq:NP_566173.1 UniGene:At.18809 STRING:Q9M892 PaxDb:Q9M892
            PRIDE:Q9M892 ProMEX:Q9M892 EnsemblPlants:AT3G02480.1 GeneID:821185
            KEGG:ath:AT3G02480 TAIR:At3g02480 eggNOG:NOG328190 OMA:QTKEKAG
            PhylomeDB:Q9M892 ProtClustDB:CLSN2917068 Genevestigator:Q9M892
            Uniprot:Q9M892
        Length = 68

 Score = 155 (59.6 bits), Expect = 2.8e-11, P = 2.8e-11
 Identities = 32/66 (48%), Positives = 40/66 (60%)

Query:     1 MNSSENTSYXXXXXXXXXXXXXXXMMDKVSNAAQSAKDSVQEAGNQMKAKAQGAADSVKN 60
             M++ +N SY               MMDK  +AA SA+DS+Q+ G QMK KAQGAAD VK+
Sbjct:     1 MDNKQNASYQAGQATGQTKEKAGGMMDKAKDAAASAQDSLQQTGQQMKEKAQGAADVVKD 60

Query:    61 TVGMNK 66
               GMNK
Sbjct:    61 KTGMNK 66


>TAIR|locus:2164012 [details] [associations]
            symbol:AT5G53820 "AT5G53820" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0008150
            "biological_process" evidence=ND] [GO:0009507 "chloroplast"
            evidence=ISM] [GO:0009830 "cell wall modification involved in
            abscission" evidence=RCA] EMBL:CP002688 EMBL:AB017066 EMBL:BT026391
            IPI:IPI00527866 RefSeq:NP_200193.1 UniGene:At.6986 PRIDE:Q9FHZ4
            EnsemblPlants:AT5G53820.1 GeneID:835463 KEGG:ath:AT5G53820
            TAIR:At5g53820 OMA:ESIQEGG PhylomeDB:Q9FHZ4 ProtClustDB:CLSN2916332
            Genevestigator:Q9FHZ4 Uniprot:Q9FHZ4
        Length = 67

 Score = 144 (55.7 bits), Expect = 4.1e-10, P = 4.1e-10
 Identities = 27/65 (41%), Positives = 42/65 (64%)

Query:     2 NSSENTSYXXXXXXXXXXXXXXXMMDKVSNAAQSAKDSVQEAGNQMKAKAQGAADSVKNT 61
             N+S++ S+               ++DK SNAAQSAK+S+QE G Q+K KAQGA++++K  
Sbjct:     3 NNSQSMSFNAGQAKGQTQEKASNLIDKASNAAQSAKESIQEGGQQLKQKAQGASETIKEK 62

Query:    62 VGMNK 66
              G++K
Sbjct:    63 TGISK 67


>TAIR|locus:2035134 [details] [associations]
            symbol:AT1G52680 "AT1G52680" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0008150
            "biological_process" evidence=ND] [GO:0009827 "plant-type cell wall
            modification" evidence=RCA] [GO:0009860 "pollen tube growth"
            evidence=RCA] EMBL:CP002684 EMBL:AC008016 EMBL:DQ446353
            IPI:IPI00519081 PIR:G96567 RefSeq:NP_564613.1 UniGene:At.11640
            PRIDE:Q9SSS0 EnsemblPlants:AT1G52680.1 GeneID:841700
            KEGG:ath:AT1G52680 TAIR:At1g52680 InParanoid:Q9SSS0 OMA:NADHHTH
            PhylomeDB:Q9SSS0 ProtClustDB:CLSN2688727 Genevestigator:Q9SSS0
            Uniprot:Q9SSS0
        Length = 114

 Score = 89 (36.4 bits), Expect = 0.00027, P = 0.00027
 Identities = 17/30 (56%), Positives = 23/30 (76%)

Query:    36 AKDSVQEAGNQMKAKAQGAADSVKNTVGMN 65
             A   +Q+ G Q+K  AQGAAD+VKNT+GM+
Sbjct:    62 ASSVIQQTGGQVKNMAQGAADAVKNTLGMS 91


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.295   0.106   0.257    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0       66        51   0.00091  102 3  10 24  0.40    27
                                                     29  0.44    26


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  4
  No. of states in DFA:  361 (39 KB)
  Total size of DFA:  66 KB (2062 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  8.22u 0.13s 8.35t   Elapsed:  00:00:01
  Total cpu time:  8.22u 0.13s 8.35t   Elapsed:  00:00:01
  Start:  Sat May 11 00:02:44 2013   End:  Sat May 11 00:02:45 2013

Back to top