Query 046180
Match_columns 66
No_of_seqs 100 out of 118
Neff 4.5
Searched_HMMs 46136
Date Fri Mar 29 09:27:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046180.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/046180hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4744 Uncharacterized conser 97.6 0.00028 6.1E-09 53.0 6.7 38 5-42 85-122 (308)
2 PF02987 LEA_4: Late embryogen 97.2 0.002 4.3E-08 35.3 5.7 38 7-44 4-41 (44)
3 PF02987 LEA_4: Late embryogen 96.9 0.0076 1.6E-07 33.0 6.0 39 16-54 2-40 (44)
4 COG3237 Uncharacterized protei 95.9 0.043 9.4E-07 33.3 5.8 62 1-62 1-67 (67)
5 KOG4744 Uncharacterized conser 95.8 0.052 1.1E-06 41.0 7.0 27 34-60 202-228 (308)
6 PF14013 MT0933_antitox: MT093 85.3 3.8 8.3E-05 23.2 4.8 48 10-63 4-51 (51)
7 PF05957 DUF883: Bacterial pro 84.2 7.1 0.00015 23.6 7.7 48 13-60 20-67 (94)
8 PF12732 YtxH: YtxH-like prote 84.0 6.4 0.00014 23.0 6.3 25 14-38 27-51 (74)
9 PF12732 YtxH: YtxH-like prote 81.6 8.2 0.00018 22.5 7.1 25 8-32 32-56 (74)
10 PF05957 DUF883: Bacterial pro 72.6 18 0.0004 21.8 7.4 32 27-58 23-54 (94)
11 PF11034 DUF2823: Protein of u 70.0 11 0.00024 23.0 3.9 37 26-62 1-53 (68)
12 PF05532 CsbD: CsbD-like; Int 66.0 3.8 8.3E-05 23.2 1.2 46 10-58 6-51 (53)
13 PRK10428 hypothetical protein; 62.4 31 0.00067 20.6 5.2 52 4-55 3-58 (69)
14 COG3237 Uncharacterized protei 47.8 62 0.0013 19.6 6.0 47 15-61 5-59 (67)
15 PF07918 CAP160: CAP160 repeat 33.9 71 0.0015 16.3 2.8 22 44-65 5-26 (27)
16 PF03760 LEA_1: Late embryogen 28.4 1.5E+02 0.0032 18.2 5.0 31 18-48 4-34 (73)
17 PRK10404 hypothetical protein; 23.9 2E+02 0.0043 18.1 6.5 30 20-49 34-63 (101)
18 PTZ00208 65 kDa invariant surf 23.2 3.3E+02 0.0071 21.9 5.9 24 41-64 125-148 (436)
19 PF11727 ISG65-75: Invariant s 20.6 3.4E+02 0.0073 19.6 6.5 42 23-64 102-143 (286)
20 PF01277 Oleosin: Oleosin; In 20.2 1.4E+02 0.0029 19.8 2.8 18 35-52 95-112 (118)
No 1
>KOG4744 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.58 E-value=0.00028 Score=53.05 Aligned_cols=38 Identities=37% Similarity=0.459 Sum_probs=31.1
Q ss_pred hhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 046180 5 ENTSYQAGQAKGQAQEKGNQMMDKVSNAAQSAKDSVQE 42 (66)
Q Consensus 5 ~~~s~~AGea~gqaqeK~~~~m~~akdaAq~AKd~~qq 42 (66)
+.++++||++++.+.||+++.++.+.+++.+++|...|
T Consensus 85 ~~a~~kA~~a~~~A~eKag~A~d~a~dka~s~kD~a~q 122 (308)
T KOG4744|consen 85 DKASDKAGEAKDKAYEKAGSAKDTAKDKAGSAKDKASQ 122 (308)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhHHH
Confidence 56899999999999999999999888877655555333
No 2
>PF02987 LEA_4: Late embryogenesis abundant protein; InterPro: IPR004238 Different types of late embryogenesis abundant (LEA) proteins are expressed at different stages of late embryogenesis in higher plant seed embryos and under conditions of dehydration stress. The function of these proteins is unknown. This entry represents a repeat characteristic of some LEA proteins, including LEA3 [, ].
Probab=97.22 E-value=0.002 Score=35.30 Aligned_cols=38 Identities=34% Similarity=0.429 Sum_probs=23.9
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 046180 7 TSYQAGQAKGQAQEKGNQMMDKVSNAAQSAKDSVQEAG 44 (66)
Q Consensus 7 ~s~~AGea~gqaqeK~~~~m~~akdaAq~AKd~~qqag 44 (66)
...+++|++..+.+|++++.+.+.+++.++||++.+..
T Consensus 4 a~~Ka~e~~d~a~~ka~e~kd~a~eKa~eaKd~a~eka 41 (44)
T PF02987_consen 4 AKEKASEAKDAAKEKAGEAKDAAAEKAEEAKDSAKEKA 41 (44)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566666666666666666666666666666655443
No 3
>PF02987 LEA_4: Late embryogenesis abundant protein; InterPro: IPR004238 Different types of late embryogenesis abundant (LEA) proteins are expressed at different stages of late embryogenesis in higher plant seed embryos and under conditions of dehydration stress. The function of these proteins is unknown. This entry represents a repeat characteristic of some LEA proteins, including LEA3 [, ].
Probab=96.87 E-value=0.0076 Score=32.97 Aligned_cols=39 Identities=28% Similarity=0.343 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhH
Q 046180 16 GQAQEKGNQMMDKVSNAAQSAKDSVQEAGNQMKAKAQGA 54 (66)
Q Consensus 16 gqaqeK~~~~m~~akdaAq~AKd~~qqagqqvk~~aqgA 54 (66)
..+.+|++++.+.+.+++..++|.+.+.+..+++.+.+.
T Consensus 2 e~a~~Ka~e~~d~a~~ka~e~kd~a~eKa~eaKd~a~ek 40 (44)
T PF02987_consen 2 EAAKEKASEAKDAAKEKAGEAKDAAAEKAEEAKDSAKEK 40 (44)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356788888888888888888888777777766665553
No 4
>COG3237 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.91 E-value=0.043 Score=33.35 Aligned_cols=62 Identities=32% Similarity=0.370 Sum_probs=52.0
Q ss_pred CCc-hhhHhhHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHhHHHHHHHhhHHHHHHHhh
Q 046180 1 MNS-SENTSYQAGQAKGQAQEKGNQMMD----KVSNAAQSAKDSVQEAGNQMKAKAQGAADSVKNTV 62 (66)
Q Consensus 1 ms~-s~~~s~~AGea~gqaqeK~~~~m~----~akdaAq~AKd~~qqagqqvk~~aqgA~davK~~~ 62 (66)
||. +++..-.+-+++|.++|..+.+.+ .+..+++.++-++|+.-+.+|+++.++.|.+++.+
T Consensus 1 M~~~~dr~~g~~~q~~GkvKE~~Gk~Tgd~~l~aeGka~ka~gkvqe~~g~aKd~vk~a~d~~~~~~ 67 (67)
T COG3237 1 MSDEKDRIEGKAKQAKGKVKEGVGKATGDDSLEAEGKADKAKGKVQERVGDAKDKVKKAVDDVKNRL 67 (67)
T ss_pred CCchHHHHHHHHHHhhhHHHHHHccccCCHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 543 367888899999999999999886 46667788888999999999999999999988753
No 5
>KOG4744 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.79 E-value=0.052 Score=41.02 Aligned_cols=27 Identities=41% Similarity=0.489 Sum_probs=16.3
Q ss_pred HHHHHHHHHHhHHHHHHHhhHHHHHHH
Q 046180 34 QSAKDSVQEAGNQMKAKAQGAADSVKN 60 (66)
Q Consensus 34 q~AKd~~qqagqqvk~~aqgA~davK~ 60 (66)
-++++++.++.+.++++++.+.+..++
T Consensus 202 ~~A~dk~~et~e~~Kdka~d~~e~A~d 228 (308)
T KOG4744|consen 202 GSAKDKAAETAEKAKDKAQDAKEKAKD 228 (308)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 355555666666666666666665554
No 6
>PF14013 MT0933_antitox: MT0933-like antitoxin protein
Probab=85.28 E-value=3.8 Score=23.22 Aligned_cols=48 Identities=21% Similarity=0.360 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhHHHHHHHhhc
Q 046180 10 QAGQAKGQAQEKGNQMMDKVSNAAQSAKDSVQEAGNQMKAKAQGAADSVKNTVG 63 (66)
Q Consensus 10 ~AGea~gqaqeK~~~~m~~akdaAq~AKd~~qqagqqvk~~aqgA~davK~~~G 63 (66)
+|.+...+-.+|+.+.++++.+.+- .-||..-.+....+.+++++.||
T Consensus 4 Kak~~~~~~~dk~~~~iDKA~d~vd------~kTGgKy~dqId~~~d~a~~~lg 51 (51)
T PF14013_consen 4 KAKDLASKNPDKIDQGIDKAGDFVD------EKTGGKYSDQIDKAQDKAKDALG 51 (51)
T ss_pred HHHHHHHHChHHHHHHHHHHHHHHH------hhcCCchHHHHHHHHHHHHhhcC
Confidence 4556666666777777777777553 22455555555666667766665
No 7
>PF05957 DUF883: Bacterial protein of unknown function (DUF883); InterPro: IPR010279 This family consists of several bacterial proteins of unknown function that include the Escherichia coli genes for ElaB, YgaM and YqjD.
Probab=84.18 E-value=7.1 Score=23.62 Aligned_cols=48 Identities=27% Similarity=0.430 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhHHHHHHH
Q 046180 13 QAKGQAQEKGNQMMDKVSNAAQSAKDSVQEAGNQMKAKAQGAADSVKN 60 (66)
Q Consensus 13 ea~gqaqeK~~~~m~~akdaAq~AKd~~qqagqqvk~~aqgA~davK~ 60 (66)
.+...+.++++++-+++.+....+++.+.+..+++++.+..+.+.+.+
T Consensus 20 ~~~~~~~~~~~~~r~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 67 (94)
T PF05957_consen 20 SAADLAGEKADEARDRAEEALDDARDRAEDAADQAREQAREAAEQTED 67 (94)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555556656666666667777777777777666666655544
No 8
>PF12732 YtxH: YtxH-like protein; InterPro: IPR024623 This family of uncharacterised proteins is found in bacteria. Proteins in this family are typically between 100 and 143 amino acids in length. The N-terminal region is the most conserved.
Probab=84.01 E-value=6.4 Score=22.97 Aligned_cols=25 Identities=20% Similarity=0.415 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 046180 14 AKGQAQEKGNQMMDKVSNAAQSAKD 38 (66)
Q Consensus 14 a~gqaqeK~~~~m~~akdaAq~AKd 38 (66)
++.+..+.++++.+++.+....+++
T Consensus 27 ~R~~l~~~~~~~~~~~~~~~~~~~~ 51 (74)
T PF12732_consen 27 TREKLKDKAEDLKDKAKDLYEEAKE 51 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444333
No 9
>PF12732 YtxH: YtxH-like protein; InterPro: IPR024623 This family of uncharacterised proteins is found in bacteria. Proteins in this family are typically between 100 and 143 amino acids in length. The N-terminal region is the most conserved.
Probab=81.64 E-value=8.2 Score=22.51 Aligned_cols=25 Identities=20% Similarity=0.213 Sum_probs=9.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHH
Q 046180 8 SYQAGQAKGQAQEKGNQMMDKVSNA 32 (66)
Q Consensus 8 s~~AGea~gqaqeK~~~~m~~akda 32 (66)
.+.+.+.+...++...++.+.+++.
T Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~k~~ 56 (74)
T PF12732_consen 32 KDKAEDLKDKAKDLYEEAKEKVKEK 56 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444433333333
No 10
>PF05957 DUF883: Bacterial protein of unknown function (DUF883); InterPro: IPR010279 This family consists of several bacterial proteins of unknown function that include the Escherichia coli genes for ElaB, YgaM and YqjD.
Probab=72.63 E-value=18 Score=21.78 Aligned_cols=32 Identities=31% Similarity=0.435 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHhhHHHHH
Q 046180 27 DKVSNAAQSAKDSVQEAGNQMKAKAQGAADSV 58 (66)
Q Consensus 27 ~~akdaAq~AKd~~qqagqqvk~~aqgA~dav 58 (66)
+.+.+.+..+++++.+....++..+.++.+.+
T Consensus 23 ~~~~~~~~~~r~~~~~~~~~a~~~~~~~~~~~ 54 (94)
T PF05957_consen 23 DLAGEKADEARDRAEEALDDARDRAEDAADQA 54 (94)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344444444444444444444433333
No 11
>PF11034 DUF2823: Protein of unknown function (DUF2823); InterPro: IPR020100 This fungal protein increases during glucose depravation. Its function is unknown [].
Probab=70.04 E-value=11 Score=22.99 Aligned_cols=37 Identities=32% Similarity=0.485 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHhH----------------HHHHHHhhHHHHHHHhh
Q 046180 26 MDKVSNAAQSAKDSVQEAGN----------------QMKAKAQGAADSVKNTV 62 (66)
Q Consensus 26 m~~akdaAq~AKd~~qqagq----------------qvk~~aqgA~davK~~~ 62 (66)
|+.+++++-+..|++|+++- .+-..+..|.|+|.++.
T Consensus 1 M~tiK~a~nYVse~vq~at~~asKEaNK~vAKds~a~igtRa~AA~dav~DK~ 53 (68)
T PF11034_consen 1 MDTIKNAANYVSEKVQGATSGASKEANKEVAKDSNASIGTRASAAKDAVGDKI 53 (68)
T ss_pred ChhHHHHHHHHHHHHHHhhhhhhHHHHHHHhcCCCCchhHHHHHHHHHHhhhh
Confidence 45666666666666665443 23345666777776654
No 12
>PF05532 CsbD: CsbD-like; InterPro: IPR008462 CsbD is a bacterial general stress response protein. It's expression is mediated by sigma-B, an alternative sigma factor []. The role of CsbD in stress response is unclear.; PDB: 1YWW_A 1RYK_A.
Probab=65.97 E-value=3.8 Score=23.18 Aligned_cols=46 Identities=26% Similarity=0.371 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhHHHHH
Q 046180 10 QAGQAKGQAQEKGNQMMDKVSNAAQSAKDSVQEAGNQMKAKAQGAADSV 58 (66)
Q Consensus 10 ~AGea~gqaqeK~~~~m~~akdaAq~AKd~~qqagqqvk~~aqgA~dav 58 (66)
++-+++|.++|..+.+.+.- -..+.-...+....++.....+.|++
T Consensus 6 ~~~~~kGk~Ke~~G~~tgd~---~~qaeG~~~q~~G~~q~~~g~~kd~~ 51 (53)
T PF05532_consen 6 KADQAKGKVKEAAGKLTGDE---ELQAEGKAEQAKGKAQEKAGDAKDAA 51 (53)
T ss_dssp CHHHHHHHHHHHTTTS-HHH---HCCCTTSHHHHHHHHHHHT---HHHH
T ss_pred HHHHHhhHHHHHHHhccCCH---HHHHhhHHHHHHHHHHHHHHHHHHHh
Confidence 34577888888888876532 22222233334444444444444444
No 13
>PRK10428 hypothetical protein; Provisional
Probab=62.42 E-value=31 Score=20.55 Aligned_cols=52 Identities=17% Similarity=0.204 Sum_probs=30.8
Q ss_pred hhhHhhHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHhHHHHHHHhhHH
Q 046180 4 SENTSYQAGQAKGQAQEKGNQMMDK----VSNAAQSAKDSVQEAGNQMKAKAQGAA 55 (66)
Q Consensus 4 s~~~s~~AGea~gqaqeK~~~~m~~----akdaAq~AKd~~qqagqqvk~~aqgA~ 55 (66)
.++..=+.-+++|...|+.+.+.+. +...+....-++|+.-..+++.+....
T Consensus 3 ~D~i~G~~~q~kGkvKe~~GklT~d~~~~~eG~~dql~GkiQe~~G~~Kd~a~~~~ 58 (69)
T PRK10428 3 KDEAGGNWKQFKGKVKEQWGKLTDDDMTVIEGKRDQLVGKIQERYGYQKDQAEKEV 58 (69)
T ss_pred HHHHhhhHHHHHHHHHHHHHhccCCHHHHHcCcHHHHHHHHHHHHhHHHHHHHHHH
Confidence 3455556678888888888887653 333334555555555555555544443
No 14
>COG3237 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=47.77 E-value=62 Score=19.56 Aligned_cols=47 Identities=23% Similarity=0.331 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHhHHHHHHHhhHHHHHHHh
Q 046180 15 KGQAQEKGNQMMDKVSNAAQ--------SAKDSVQEAGNQMKAKAQGAADSVKNT 61 (66)
Q Consensus 15 ~gqaqeK~~~~m~~akdaAq--------~AKd~~qqagqqvk~~aqgA~davK~~ 61 (66)
.-+...+..|+.+++++..- .+.-+.+++-..|+.....+.|.|+..
T Consensus 5 ~dr~~g~~~q~~GkvKE~~Gk~Tgd~~l~aeGka~ka~gkvqe~~g~aKd~vk~a 59 (67)
T COG3237 5 KDRIEGKAKQAKGKVKEGVGKATGDDSLEAEGKADKAKGKVQERVGDAKDKVKKA 59 (67)
T ss_pred HHHHHHHHHHhhhHHHHHHccccCCHHHHhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566777788787777663 333345555556666666666666553
No 15
>PF07918 CAP160: CAP160 repeat; InterPro: IPR012418 This region featured in this family is repeated in spinach cold acclimation protein CAP160 (O50054 from SWISSPROT) CAP160 is induced during periods of drought stress; its precise function is unknown but it has been implicated in the stabilisation of membranes, cytoskeletal elements, and ribosomes. By acting as a compatible solute, it may reduce the toxic effects of cellular solutes that accumulate at high concentration []. Other members of this family are also induced by water stress, abscisic acid, and/or low temperature, such as desiccation-responsive protein 29B (Q04980 from SWISSPROT) and CDet11-24 protein (O23764 from SWISSPROT).
Probab=33.86 E-value=71 Score=16.28 Aligned_cols=22 Identities=23% Similarity=0.324 Sum_probs=17.5
Q ss_pred hHHHHHHHhhHHHHHHHhhccC
Q 046180 44 GNQMKAKAQGAADSVKNTVGMN 65 (66)
Q Consensus 44 gqqvk~~aqgA~davK~~~G~~ 65 (66)
.--+-+++.-|++.|-.+||-+
T Consensus 5 ts~iaDKA~~AknvvaSKLGyg 26 (27)
T PF07918_consen 5 TSAIADKAISAKNVVASKLGYG 26 (27)
T ss_pred HHHHHHHHHHHHHHHHHhccCC
Confidence 4456788888999999999864
No 16
>PF03760 LEA_1: Late embryogenesis abundant (LEA) group 1 ; InterPro: IPR005513 LEA proteins are late embryonic proteins abundant in higher plant seed embryos. They may play an essential role in seed survival and control of water exchanges during seed desiccation and imbibition. Family members are conserved along the entire coding region, especially within the hydrophobic internal 20 amino acid motif. This motif may be repeated.; GO: 0009790 embryo development
Probab=28.41 E-value=1.5e+02 Score=18.15 Aligned_cols=31 Identities=19% Similarity=0.244 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 046180 18 AQEKGNQMMDKVSNAAQSAKDSVQEAGNQMK 48 (66)
Q Consensus 18 aqeK~~~~m~~akdaAq~AKd~~qqagqqvk 48 (66)
+.||+.++.-+++.....++.++++-.+.+.
T Consensus 4 ~Kek~~n~~asAka~~~k~kA~aqEKaeK~t 34 (73)
T PF03760_consen 4 AKEKAANAAASAKAKMEKTKAKAQEKAEKAT 34 (73)
T ss_pred HHHHHHHHHHHHHhhhHHHHHhHHHHHHHHh
Confidence 4567777766666666666666666555444
No 17
>PRK10404 hypothetical protein; Provisional
Probab=23.93 E-value=2e+02 Score=18.15 Aligned_cols=30 Identities=17% Similarity=0.196 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 046180 20 EKGNQMMDKVSNAAQSAKDSVQEAGNQMKA 49 (66)
Q Consensus 20 eK~~~~m~~akdaAq~AKd~~qqagqqvk~ 49 (66)
++..++=+++...-..+++.+.++...+..
T Consensus 34 e~~~~lR~r~~~~L~~ar~~l~~~~~~~~~ 63 (101)
T PRK10404 34 QKYVELKARAEKALDDVKKRVSQASDSYYY 63 (101)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 333333344444444455555544444333
No 18
>PTZ00208 65 kDa invariant surface glycoprotein; Provisional
Probab=23.18 E-value=3.3e+02 Score=21.94 Aligned_cols=24 Identities=25% Similarity=0.363 Sum_probs=19.8
Q ss_pred HHHhHHHHHHHhhHHHHHHHhhcc
Q 046180 41 QEAGNQMKAKAQGAADSVKNTVGM 64 (66)
Q Consensus 41 qqagqqvk~~aqgA~davK~~~G~ 64 (66)
..+++.++-..+..++++|+++|-
T Consensus 125 kk~~eEaek~~~~VKeAAk~ArG~ 148 (436)
T PTZ00208 125 KKAGEEAEKLHQEVKKAAKNARGW 148 (436)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCC
Confidence 566778888888899999999884
No 19
>PF11727 ISG65-75: Invariant surface glycoprotein; InterPro: IPR021057 This family is found in Trypanosome species, and appears to be one of two invariant surface glycoproteins, ISG65 and ISG75, that are found in the mammalian stage of the parasitic protozoan. The sequence suggests the two families are polypeptides with N-terminal signal sequences, hydrophilic extracellular domains, single trans-membrane alpha-helices and short cytoplasmic domains. They are both expressed in the bloodstream form but not in the midgut stage. Both polypeptides are distributed over the entire surface of the parasite [, ].
Probab=20.60 E-value=3.4e+02 Score=19.61 Aligned_cols=42 Identities=7% Similarity=0.219 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhHHHHHHHhhcc
Q 046180 23 NQMMDKVSNAAQSAKDSVQEAGNQMKAKAQGAADSVKNTVGM 64 (66)
Q Consensus 23 ~~~m~~akdaAq~AKd~~qqagqqvk~~aqgA~davK~~~G~ 64 (66)
.++.+.+++..-..-+.+..+.+.++.....+.+++++.+|-
T Consensus 102 ~~~~~~a~~~~~~~~~~a~~~~~~~~~~~~~ak~aa~~A~g~ 143 (286)
T PF11727_consen 102 KEICEEAKKKNTEQLEEAKKAMEEAEETHEEAKEAAAKALGE 143 (286)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 333344444444444446677777777888888888888764
No 20
>PF01277 Oleosin: Oleosin; InterPro: IPR000136 Oleosins [] are the proteinaceous components of plants' lipid storage bodies called oil bodies. Oil bodies are small droplets (0.2 to 1.5 mu-m in diameter) containing mostly triacylglycerol that are surrounded by a phospholipid/ oleosin annulus. Oleosins may have a structural role in stabilising the lipid body during dessication of the seed, by preventing coalescence of the oil. They may also provide recognition signals for specific lipase anchorage in lipolysis during seedling growth. Oleosins are found in the monolayer lipid/ water interface of oil bodies and probably interact with both the lipid and phospholipid moieties. Oleosins are proteins of 16 Kd to 24 Kd and are composed of three domains: an N-terminal hydrophilic region of variable length (from 30 to 60 residues); a central hydrophobic domain of about 70 residues and a C-terminal amphipathic region of variable length (from 60 to 100 residues). The central hydrophobic domain is proposed to be made up of beta-strand structure and to interact with the lipids []. It is the only domain whose sequence is conserved.; GO: 0012511 monolayer-surrounded lipid storage body, 0016021 integral to membrane
Probab=20.23 E-value=1.4e+02 Score=19.79 Aligned_cols=18 Identities=22% Similarity=0.307 Sum_probs=7.4
Q ss_pred HHHHHHHHHhHHHHHHHh
Q 046180 35 SAKDSVQEAGNQMKAKAQ 52 (66)
Q Consensus 35 ~AKd~~qqagqqvk~~aq 52 (66)
+++.+++++...++++++
T Consensus 95 ~Ak~ri~d~a~~v~~kak 112 (118)
T PF01277_consen 95 YAKRRIADTASYVGQKAK 112 (118)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333344444444444443
Done!