Query 046180
Match_columns 66
No_of_seqs 100 out of 118
Neff 4.5
Searched_HMMs 29240
Date Mon Mar 25 16:27:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046180.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/046180hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2x43_S Sherp; membrane protein 95.6 0.023 8E-07 33.7 4.7 49 5-53 7-55 (67)
2 2x43_S Sherp; membrane protein 95.5 0.014 4.7E-07 34.6 3.4 50 13-62 4-53 (67)
3 1ryk_A Protein YJBJ; alpha pro 88.6 0.15 5.2E-06 29.3 1.1 58 5-62 4-65 (69)
4 1yww_A Hypothetical protein PA 86.6 0.13 4.4E-06 31.2 -0.0 58 4-61 23-84 (85)
5 2l9q_A 12 kDa heat shock prote 48.0 9.7 0.00033 24.2 1.9 32 24-55 73-104 (109)
6 2kfe_A Meucin-24; alpha-helix, 34.9 34 0.0012 16.6 2.3 17 23-39 4-20 (26)
7 3tj6_B Protein PS 120; cytoske 18.6 80 0.0027 14.8 1.8 13 48-60 4-16 (23)
8 1urq_A M-tomosyn isoform; tran 8.0 3.2E+02 0.011 14.9 4.3 17 31-47 25-41 (63)
9 1oef_A Apolipoprotein E; glyco 6.1 2.8E+02 0.0095 12.4 2.4 17 44-60 7-23 (26)
10 3tzl_A Tryptophanyl-tRNA synth 5.6 7.8E+02 0.027 17.0 4.4 30 35-64 293-322 (322)
No 1
>2x43_S Sherp; membrane protein; NMR {Leishmania major}
Probab=95.63 E-value=0.023 Score=33.66 Aligned_cols=49 Identities=27% Similarity=0.400 Sum_probs=30.1
Q ss_pred hhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhh
Q 046180 5 ENTSYQAGQAKGQAQEKGNQMMDKVSNAAQSAKDSVQEAGNQMKAKAQG 53 (66)
Q Consensus 5 ~~~s~~AGea~gqaqeK~~~~m~~akdaAq~AKd~~qqagqqvk~~aqg 53 (66)
++++..|+|++..+..|+.++-+-+.++|.+.+|.+.++.+.+|++.-|
T Consensus 7 Dk~~~~A~E~kd~~~dK~qElKdga~~KAaelkD~~~~~~E~iKDKisg 55 (67)
T 2x43_S 7 DQMKNAAAEAKDNVHDKIQELKDDVGNKAAEVRDAVSSTVESIKDKLSG 55 (67)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTTTTTTHHHHHHHHHHHHHHHHHHTTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHhHHHHHHHHhcc
Confidence 3455566666666666666666666666666666666666666666544
No 2
>2x43_S Sherp; membrane protein; NMR {Leishmania major}
Probab=95.50 E-value=0.014 Score=34.64 Aligned_cols=50 Identities=18% Similarity=0.360 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhHHHHHHHhh
Q 046180 13 QAKGQAQEKGNQMMDKVSNAAQSAKDSVQEAGNQMKAKAQGAADSVKNTV 62 (66)
Q Consensus 13 ea~gqaqeK~~~~m~~akdaAq~AKd~~qqagqqvk~~aqgA~davK~~~ 62 (66)
|++.++.+|+.++-+++-|++++-||.+...+-.+++++...++..|+++
T Consensus 4 E~kDk~~~~A~E~kd~~~dK~qElKdga~~KAaelkD~~~~~~E~iKDKi 53 (67)
T 2x43_S 4 ETRDQMKNAAAEAKDNVHDKIQELKDDVGNKAAEVRDAVSSTVESIKDKL 53 (67)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTTTTTTHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHhHHHHHHHHh
Confidence 78999999999999999999999999888778888888888888888875
No 3
>1ryk_A Protein YJBJ; alpha protein, structural genomics, protein structure initiative, OCSP, NESG, PSI, northeast structural genomics consortium; NMR {Escherichia coli} SCOP: a.60.11.1
Probab=88.64 E-value=0.15 Score=29.29 Aligned_cols=58 Identities=16% Similarity=0.150 Sum_probs=45.7
Q ss_pred hhHhhHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHhHHHHHHHhhHHHHHHHhh
Q 046180 5 ENTSYQAGQAKGQAQEKGNQMMDK----VSNAAQSAKDSVQEAGNQMKAKAQGAADSVKNTV 62 (66)
Q Consensus 5 ~~~s~~AGea~gqaqeK~~~~m~~----akdaAq~AKd~~qqagqqvk~~aqgA~davK~~~ 62 (66)
+++.=+.-+++|.++|..+.+.+. +...++.+.-++|+....+++.+.+.+|.+.+.+
T Consensus 4 dki~G~~~q~kGk~Ke~~G~lTgd~~~~~eG~~~q~~Gk~q~~~g~~kd~~~~~~d~~~~~~ 65 (69)
T 1ryk_A 4 DEAGGNWKQFKGKVKEQWGKLTDDDMTIIEGKRDQLVGKIQERYGYQKDQAEKEVVDWETRN 65 (69)
T ss_dssp CCSSSHHHHHHHHHHHHTCSSCHHHHHHHTTCHHHHHHHHHHHTCCCHHHHHHHHHHHHHHH
T ss_pred HHHhhhHHHHHhHHHHHHHHhcCCHhHHHcchHHHHhHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 445667789999999999988874 4444578888888999999998888888877654
No 4
>1yww_A Hypothetical protein PA4738; structural genomics, YJBJ, PSI, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Pseudomonas aeruginosa}
Probab=86.60 E-value=0.13 Score=31.24 Aligned_cols=58 Identities=17% Similarity=0.160 Sum_probs=44.2
Q ss_pred hhhHhhHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHhHHHHHHHhhHHHHHHHh
Q 046180 4 SENTSYQAGQAKGQAQEKGNQMMDK----VSNAAQSAKDSVQEAGNQMKAKAQGAADSVKNT 61 (66)
Q Consensus 4 s~~~s~~AGea~gqaqeK~~~~m~~----akdaAq~AKd~~qqagqqvk~~aqgA~davK~~ 61 (66)
.+++.=++-+++|.++|..+.+.+. +...++.+.-++|+..+.+++.+...++.+++.
T Consensus 23 ~dkieG~~~q~kGk~KE~~GklTgd~~~eaEGk~~q~~Gk~qe~~g~~Kd~~k~~vd~~~~~ 84 (85)
T 1yww_A 23 SDVIKGKWKQLTGKIKERWGDLTDDDLQAADGHAEYLVGKLQERYGWSKERAEQEVRDFSDR 84 (85)
T ss_dssp CCCTTTSHHHHHHHHHHHCTTSCHHHHSSSCCSHHHHHHHHHHHTCCCHHHHHHHHHHHHHT
T ss_pred HHHHHhHHHHHHHHHHHHHHHhcCCHhHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3445556778899999998888764 344567888888888888888888888877664
No 5
>2l9q_A 12 kDa heat shock protein; structural genomics, PSI-2, protein structure initiative, CE eukaryotic structural genomics, CESG; NMR {Saccharomyces cerevisiae} PDB: 2ljl_A
Probab=47.96 E-value=9.7 Score=24.17 Aligned_cols=32 Identities=16% Similarity=0.317 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHhhHH
Q 046180 24 QMMDKVSNAAQSAKDSVQEAGNQMKAKAQGAA 55 (66)
Q Consensus 24 ~~m~~akdaAq~AKd~~qqagqqvk~~aqgA~ 55 (66)
-+.++++++...+++++..+++-|.....|+.
T Consensus 73 s~~dkak~a~g~~ke~l~~AaeyVS~~~~G~~ 104 (109)
T 2l9q_A 73 SLADQARDYMGAAKSKLNDAVEYVSGRVHGEE 104 (109)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSS
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHhhccCCC
Confidence 35566777777777777777777766655543
No 6
>2kfe_A Meucin-24; alpha-helix, antimicrobial protein; NMR {Synthetic}
Probab=34.94 E-value=34 Score=16.61 Aligned_cols=17 Identities=12% Similarity=0.337 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHH
Q 046180 23 NQMMDKVSNAAQSAKDS 39 (66)
Q Consensus 23 ~~~m~~akdaAq~AKd~ 39 (66)
.+.|++.+++-..+||+
T Consensus 4 kei~~kiK~kl~~akdK 20 (26)
T 2kfe_A 4 REFMSNLKEKLSGVKEK 20 (26)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHH
Confidence 45667777766666665
No 7
>3tj6_B Protein PS 120; cytoskeleton, epidemic typhus, SCA4, spotted fever, alpha-HE bundle domain, protein-protein interactions, cell adhesion; 2.76A {Rickettsia rickettsii}
Probab=18.57 E-value=80 Score=14.85 Aligned_cols=13 Identities=23% Similarity=0.253 Sum_probs=8.5
Q ss_pred HHHHhhHHHHHHH
Q 046180 48 KAKAQGAADSVKN 60 (66)
Q Consensus 48 k~~aqgA~davK~ 60 (66)
=+++|+..+++++
T Consensus 4 ynkaqdv~~AL~n 16 (23)
T 3tj6_B 4 YNKAREVINAVNP 16 (26)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3566777777765
No 8
>1urq_A M-tomosyn isoform; transport protein, tomosyn-snare complex, exocytosis, four helical bundle, coiled coil; 2.0A {Rattus norvegicus} SCOP: h.1.15.1
Probab=8.03 E-value=3.2e+02 Score=14.91 Aligned_cols=17 Identities=6% Similarity=0.063 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHHhHHH
Q 046180 31 NAAQSAKDSVQEAGNQM 47 (66)
Q Consensus 31 daAq~AKd~~qqagqqv 47 (66)
++.-+=.+++...-...
T Consensus 25 ~kvlERGekL~~L~dkT 41 (63)
T 1urq_A 25 LALDERGQKLSDLEERT 41 (63)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333334433333333
No 9
>1oef_A Apolipoprotein E; glycoprotein, plasma, lipid transport, HDL, VLDL, chylomicron, sialic acid, heparin-binding; NMR {Homo sapiens} SCOP: j.39.1.1
Probab=6.13 E-value=2.8e+02 Score=12.41 Aligned_cols=17 Identities=18% Similarity=0.282 Sum_probs=8.0
Q ss_pred hHHHHHHHhhHHHHHHH
Q 046180 44 GNQMKAKAQGAADSVKN 60 (66)
Q Consensus 44 gqqvk~~aqgA~davK~ 60 (66)
+++++..-+.-.++++.
T Consensus 7 ~e~ik~q~~~i~e~i~~ 23 (26)
T 1oef_A 7 VEDMQRQWAGLVEKVQA 23 (26)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 34444444444444443
No 10
>3tzl_A Tryptophanyl-tRNA synthetase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta structure; HET: ADP TRP; 2.15A {Campylobacter jejuni subsp} SCOP: c.26.1.0 PDB: 3m5w_A*
Probab=5.63 E-value=7.8e+02 Score=17.05 Aligned_cols=30 Identities=13% Similarity=0.254 Sum_probs=0.0
Q ss_pred HHHHHHHHHhHHHHHHHhhHHHHHHHhhcc
Q 046180 35 SAKDSVQEAGNQMKAKAQGAADSVKNTVGM 64 (66)
Q Consensus 35 ~AKd~~qqagqqvk~~aqgA~davK~~~G~ 64 (66)
+-.+-+.+-.+.++..|....+-|++..|+
T Consensus 293 ~l~~il~~G~~~a~~~a~~t~~~v~~~~g~ 322 (322)
T 3tzl_A 293 HLKEILDFGATKARKIAQEKMQKIYEKIGL 322 (322)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCc
Done!