Query 046180
Match_columns 66
No_of_seqs 100 out of 118
Neff 4.5
Searched_HMMs 13730
Date Mon Mar 25 16:27:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046180.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/046180hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1ryka_ a.60.11.1 (A:) Hypothe 64.3 3 0.00022 22.6 2.9 57 4-60 3-63 (69)
2 d1i6la_ c.26.1.1 (A:) Tryptoph 45.9 33 0.0024 22.0 7.1 55 12-66 266-326 (326)
3 d1aoca_ g.17.1.5 (A:) Coagulog 7.9 1.5E+02 0.011 18.1 2.8 21 45-65 24-44 (175)
4 d1s0ya_ d.80.1.1 (A:) Trans-3- 4.6 2.3E+02 0.017 13.4 2.8 22 44-65 13-34 (62)
5 d1uxya2 d.146.1.1 (A:201-342) 4.4 2.9E+02 0.021 15.6 2.6 22 44-65 100-121 (142)
6 d1di0a_ c.16.1.1 (A:) Lumazine 3.5 4.4E+02 0.032 15.0 3.0 20 17-36 117-136 (148)
7 d1gyxa_ d.80.1.1 (A:) 4-oxaloc 3.4 3.5E+02 0.025 13.7 2.7 22 44-65 14-35 (76)
8 d1r4xa2 d.105.1.2 (A:763-873) 3.1 2.9E+02 0.021 15.2 1.7 15 51-65 35-49 (111)
9 d2fqma1 d.378.1.1 (A:107-171) 3.1 4E+02 0.029 13.8 2.5 21 17-37 24-44 (65)
10 d1hska2 d.146.1.1 (A:209-317) 3.0 4.4E+02 0.032 14.2 2.6 22 43-64 74-95 (109)
No 1
>d1ryka_ a.60.11.1 (A:) Hypothetical protein YjbJ {Escherichia coli [TaxId: 562]}
Probab=64.29 E-value=3 Score=22.61 Aligned_cols=57 Identities=16% Similarity=0.123 Sum_probs=38.6
Q ss_pred hhhHhhHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHhHHHHHHHhhHHHHHHH
Q 046180 4 SENTSYQAGQAKGQAQEKGNQMMDKVSN----AAQSAKDSVQEAGNQMKAKAQGAADSVKN 60 (66)
Q Consensus 4 s~~~s~~AGea~gqaqeK~~~~m~~akd----aAq~AKd~~qqagqqvk~~aqgA~davK~ 60 (66)
.++..=+.-+.+|..+|..+.+.+.-.. .+.....++|+.-..+++.+...++-..+
T Consensus 3 ~d~i~G~~~q~kGkvke~~G~lT~d~~~~~eG~~eql~Gk~Q~~yG~~kd~a~~~v~~~~~ 63 (69)
T d1ryka_ 3 KDEAGGNWKQFKGKVKEQWGKLTDDDMTIIEGKRDQLVGKIQERYGYQKDQAEKEVVDWET 63 (69)
T ss_dssp CCCSSSHHHHHHHHHHHHTCSSCHHHHHHHTTCHHHHHHHHHHHTCCCHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHhhHHHHHHhhccCCHHHHhcCcHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 3455557788999999998888764333 34566666777777777777666665543
No 2
>d1i6la_ c.26.1.1 (A:) Tryptophanyl-tRNA synthetase (TrpRS) {Bacillus stearothermophilus [TaxId: 1422]}
Probab=45.93 E-value=33 Score=22.00 Aligned_cols=55 Identities=9% Similarity=0.186 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHhHHHHHHHhhHHHHHHHhhccCC
Q 046180 12 GQAKGQAQEKGNQMMDKVSNAAQ------SAKDSVQEAGNQMKAKAQGAADSVKNTVGMNK 66 (66)
Q Consensus 12 Gea~gqaqeK~~~~m~~akdaAq------~AKd~~qqagqqvk~~aqgA~davK~~~G~~k 66 (66)
|+.|...-|...+...-..+... +..+-+.+-.++++..|+...+-||+.+|+++
T Consensus 266 gdlK~~lae~i~~~L~PiRer~~~l~~~~~l~~iL~~Ga~kAr~~A~~tl~~Vr~~~Gl~r 326 (326)
T d1i6la_ 266 GVFKADLAQVVIETLRPIQERYHHWMESEELDRVLDEGAEKANRVASEMVRKMEQAMGLGR 326 (326)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 56666666666666655555433 23345778889999999999999999999975
No 3
>d1aoca_ g.17.1.5 (A:) Coagulogen {Japanese horseshoe crab (Tachypleus tridentatus) [TaxId: 6853]}
Probab=7.90 E-value=1.5e+02 Score=18.09 Aligned_cols=21 Identities=24% Similarity=0.455 Sum_probs=15.3
Q ss_pred HHHHHHHhhHHHHHHHhhccC
Q 046180 45 NQMKAKAQGAADSVKNTVGMN 65 (66)
Q Consensus 45 qqvk~~aqgA~davK~~~G~~ 65 (66)
+.+|++...|++|+-++-|++
T Consensus 24 ~e~kdkie~av~ai~~~~~is 44 (175)
T d1aoca_ 24 TEIKDKIEKAVEAVAQESGVS 44 (175)
T ss_dssp HHHHHHHHHHHHHHHHTTCSS
T ss_pred hhhHHHHHHHHHHhhcccccc
Confidence 456777778888888877663
No 4
>d1s0ya_ d.80.1.1 (A:) Trans-3-chloroacrylic acid dehalogenase alpha-subunit, CaaD1 {Pseudomonas pavonaceae [TaxId: 47881]}
Probab=4.56 E-value=2.3e+02 Score=13.43 Aligned_cols=22 Identities=18% Similarity=0.267 Sum_probs=15.4
Q ss_pred hHHHHHHHhhHHHHHHHhhccC
Q 046180 44 GNQMKAKAQGAADSVKNTVGMN 65 (66)
Q Consensus 44 gqqvk~~aqgA~davK~~~G~~ 65 (66)
-++-+..+.+-++++-+.+|..
T Consensus 13 ~eqK~~l~~~it~~~~~~~g~~ 34 (62)
T d1s0ya_ 13 DEQKRALSAGLLRVISEATGEP 34 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHHHHHHHhCcC
Confidence 3566667777778887777764
No 5
>d1uxya2 d.146.1.1 (A:201-342) Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase, MurB, C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=4.39 E-value=2.9e+02 Score=15.62 Aligned_cols=22 Identities=9% Similarity=0.068 Sum_probs=16.1
Q ss_pred hHHHHHHHhhHHHHHHHhhccC
Q 046180 44 GNQMKAKAQGAADSVKNTVGMN 65 (66)
Q Consensus 44 gqqvk~~aqgA~davK~~~G~~ 65 (66)
+..+..-+....+.|++++|+.
T Consensus 100 a~Di~~L~~~I~~~V~~kfgI~ 121 (142)
T d1uxya2 100 SEDVVQLAHHVRQKVGEKFNVW 121 (142)
T ss_dssp HHHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHHHHHHCCe
Confidence 4556666777788888888874
No 6
>d1di0a_ c.16.1.1 (A:) Lumazine synthase {Brucella abortus [TaxId: 235]}
Probab=3.49 E-value=4.4e+02 Score=14.99 Aligned_cols=20 Identities=20% Similarity=0.006 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 046180 17 QAQEKGNQMMDKVSNAAQSA 36 (66)
Q Consensus 17 qaqeK~~~~m~~akdaAq~A 36 (66)
|...+.+..-++-.++|.++
T Consensus 117 R~~~~~~~~~nKG~EaA~aa 136 (148)
T d1di0a_ 117 HHDFFHAHFKVKGVEAAHAA 136 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HhccccccccccHHHHHHHH
Confidence 33333333334444444443
No 7
>d1gyxa_ d.80.1.1 (A:) 4-oxalocrotonate tautomerase homologue YdcE {Escherichia coli [TaxId: 562]}
Probab=3.45 E-value=3.5e+02 Score=13.75 Aligned_cols=22 Identities=18% Similarity=0.146 Sum_probs=16.2
Q ss_pred hHHHHHHHhhHHHHHHHhhccC
Q 046180 44 GNQMKAKAQGAADSVKNTVGMN 65 (66)
Q Consensus 44 gqqvk~~aqgA~davK~~~G~~ 65 (66)
-+|-+..+.+-++++-+.+|..
T Consensus 14 ~EQK~~L~~~iT~a~~~~lg~~ 35 (76)
T d1gyxa_ 14 EQQKAALAADITDVIIRHLNSK 35 (76)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHHHHHHhCcC
Confidence 4666777777888888888764
No 8
>d1r4xa2 d.105.1.2 (A:763-873) Coatomer gamma subunit, C-terminal subdomain {Human (Homo sapiens) [TaxId: 9606]}
Probab=3.11 E-value=2.9e+02 Score=15.24 Aligned_cols=15 Identities=20% Similarity=0.381 Sum_probs=11.3
Q ss_pred HhhHHHHHHHhhccC
Q 046180 51 AQGAADSVKNTVGMN 65 (66)
Q Consensus 51 aqgA~davK~~~G~~ 65 (66)
-++|++.+.+-|||.
T Consensus 35 l~eAv~~li~~Lgm~ 49 (111)
T d1r4xa2 35 LEEAVGNIVKFLGMH 49 (111)
T ss_dssp HHHHHHHHHHHHTCE
T ss_pred HHHHHHHHHHHcCCc
Confidence 356888888888883
No 9
>d2fqma1 d.378.1.1 (A:107-171) Phosphoprotein P (M1) {Vesicular stomatitis indiana virus [TaxId: 11277]}
Probab=3.08 E-value=4e+02 Score=13.76 Aligned_cols=21 Identities=33% Similarity=0.305 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 046180 17 QAQEKGNQMMDKVSNAAQSAK 37 (66)
Q Consensus 17 qaqeK~~~~m~~akdaAq~AK 37 (66)
-+++-++|++-..+--.+++|
T Consensus 24 Lt~~Q~~QW~~TIeav~qSak 44 (65)
T d2fqma1 24 LSGEQKSQWMLTIKAVVQSAK 44 (65)
T ss_dssp CCHHHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHhhhc
Confidence 356667888877777777765
No 10
>d1hska2 d.146.1.1 (A:209-317) Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase, MurB, C-terminal domain {Staphylococcus aureus [TaxId: 1280]}
Probab=3.01 E-value=4.4e+02 Score=14.16 Aligned_cols=22 Identities=14% Similarity=0.247 Sum_probs=0.0
Q ss_pred HhHHHHHHHhhHHHHHHHhhcc
Q 046180 43 AGNQMKAKAQGAADSVKNTVGM 64 (66)
Q Consensus 43 agqqvk~~aqgA~davK~~~G~ 64 (66)
++..+..-.....+.|++++|+
T Consensus 74 ta~di~~Li~~i~~~V~~~~gI 95 (109)
T d1hska2 74 TATDYENLIHYVQKTVKEKFGI 95 (109)
T ss_dssp CHHHHHHHHHHHHHHHHHHHSC
T ss_pred CHHHHHHHHHHHHHHHHHHHCC
Done!