BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 046182
(898 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q620W3|EFR3_CAEBR Protein EFR3 homolog OS=Caenorhabditis briggsae GN=CBG02625 PE=3
SV=1
Length = 859
Score = 50.4 bits (119), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 56/268 (20%), Positives = 122/268 (45%), Gaps = 26/268 (9%)
Query: 175 TPKVWARICIQRMVDLAKETTTMRRVLDPMFTYFDSRRQWIPRQGLAMIVLSDMAYLMET 234
TPKV + C++ ++ A ++R V++P+ + D ++W P A+ V + Y ++
Sbjct: 241 TPKVLSDRCLRELMGKAS-FGSLRAVIEPVLKHMDLHKRWSPPPSFAIHVFRAIIYSIQ- 298
Query: 235 SGNQQLILASVIHHLDHKNVSHDPQLKSYVIQVATALARQIRSGMVLVEIGSVSDLCRHL 294
S N ++ +I+HLD S D + + V +++ + + + + + L +HL
Sbjct: 299 SQNSYFVIQELINHLDSM-CSADASTRIGIATVLSSIVSIAGTSIGPLLLSIFNSLLKHL 357
Query: 295 RKSFQATVESVGE-QESNLNILLRNSIEDCLLEIAKGIGDTRPLFDMMAMTLEKLPS--- 350
R S E G+ + + + ++ + + + A + D + + +MM T+ +P+
Sbjct: 358 RTS--VDFERSGKCSDQPAEKMYQEALINAMGDFANALPDYQKV-EMMMFTVGNIPNLDE 414
Query: 351 ------SGVIARATLGSLIILAHMISVASISSRSQQVFPEALLVQILKAMLHPNVETRVG 404
+ + +L+ +A A +++ VF ++ L +L+ L + + R+
Sbjct: 415 RKSKQGEEFLQHVLVKTLLKVATKYRTAYLAT----VFTDSFLDTLLRLALVRDPQVRLA 470
Query: 405 AHQIFSVLLIPSPINQHHEVAS-VRSGY 431
QIF LL ++H A+ V GY
Sbjct: 471 TQQIFHTLL-----DRHDNAANLVHLGY 493
>sp|Q09263|EFR3_CAEEL Protein EFR3 homolog OS=Caenorhabditis elegans GN=C32D5.3 PE=3 SV=1
Length = 859
Score = 44.7 bits (104), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 56/268 (20%), Positives = 121/268 (45%), Gaps = 26/268 (9%)
Query: 175 TPKVWARICIQRMVDLAKETTTMRRVLDPMFTYFDSRRQWIPRQGLAMIVLSDMAYLMET 234
TPKV + C++ ++ A ++R V++P+ + D ++W P A+ V + Y ++
Sbjct: 242 TPKVLSDRCLRELMGKAS-FGSLRAVIEPVLKHMDLHKRWTPPPSFAIHVFRAIIYSIQ- 299
Query: 235 SGNQQLILASVIHHLDHKNVSHDPQLKSYVIQVATALARQIRSGMVLVEIGSVSDLCRHL 294
S N ++ +I+HLD S D + + V +++ + + + + + L +HL
Sbjct: 300 SQNSYFVIQELINHLDSM-CSADASTRIGIATVLSSIVSIAGTSIGPLLLSIFNSLLKHL 358
Query: 295 RKSFQATVESVGE-QESNLNILLRNSIEDCLLEIAKGIGDTRPLFDMMAMTLEKLPS--- 350
R S E G+ + + + ++ + + + A + D + + +MM T+ +P+
Sbjct: 359 RTS--VDFERSGKCSDQPAEKMYQEALINAMGDFANALPDYQKV-EMMMFTVGNIPNLDE 415
Query: 351 ------SGVIARATLGSLIILAHMISVASISSRSQQVFPEALLVQILKAMLHPNVETRVG 404
+ + +L+ +A A +++ VF ++ L +L L + + R+
Sbjct: 416 RKSKQGDEFLQHVLVKTLLKVATKYRTAYLAT----VFTDSFLDTLLLLALVRDPQVRLA 471
Query: 405 AHQIFSVLLIPSPINQHHEVAS-VRSGY 431
QIF LL ++H A+ V GY
Sbjct: 472 TQQIFHTLL-----DRHDNAANLVHLGY 494
>sp|Q14156|EFR3A_HUMAN Protein EFR3 homolog A OS=Homo sapiens GN=EFR3A PE=1 SV=2
Length = 821
Score = 43.1 bits (100), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 49/201 (24%), Positives = 94/201 (46%), Gaps = 21/201 (10%)
Query: 165 PSALTREEVETPKVWARICIQRMVDLAKETTTMRRVLDPMFTYFDSRRQWIPRQGLAMIV 224
PSA +EE P V A C + ++ A M + P+F + D + W P + A+
Sbjct: 221 PSATDKEE--NPAVLAENCFRELLGRAT-FGNMNNAVRPVFAHLDHHKLWDPNE-FAVHC 276
Query: 225 LSDMAYLMETSGNQQLILASVIHHLDHKNVSHDPQLKSYVIQV---ATALARQIRSGMVL 281
+ Y ++ + +I ++ HLD + P++++ +IQV A A+A + G +
Sbjct: 277 FKIIMYSIQAQYSHHVI-QEILGHLDARK-KDAPRVRAGIIQVLLEAVAIAAKGSIGPTV 334
Query: 282 VEIGSVSDLCRHLRKS--FQATVESVGEQES-NLNILLRNS----IEDCLLEIAKGIGDT 334
+E+ + L +HLR S F+A G S NLN +++ +++ +++ G
Sbjct: 335 LEV--FNTLLKHLRLSVEFEANDLQGGSVGSVNLNTSSKDNDEKIVQNAIIQTIGFFGSN 392
Query: 335 RPLF---DMMAMTLEKLPSSG 352
P + ++M + K+P G
Sbjct: 393 LPDYQRSEIMMFIMGKVPVFG 413
>sp|Q8BG67|EFR3A_MOUSE Protein EFR3 homolog A OS=Mus musculus GN=Efr3a PE=1 SV=1
Length = 819
Score = 41.6 bits (96), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 36/138 (26%), Positives = 67/138 (48%), Gaps = 11/138 (7%)
Query: 165 PSALTREEVETPKVWARICIQRMVDLAKETTTMRRVLDPMFTYFDSRRQWIPRQGLAMIV 224
PSA +EE P V A C + ++ A M + P+F + D + W P + A+
Sbjct: 221 PSAADKEE--NPAVLAESCFRELLGRAT-FGNMNNAVRPVFAHLDHHKLWDPNE-FAVHC 276
Query: 225 LSDMAYLMETSGNQQLILASVIHHLDHKNVSHDPQLKSYVIQV---ATALARQIRSGMVL 281
+ Y ++ + +I ++ HLD + P++++ +IQV A A+A + G +
Sbjct: 277 FKIIMYSIQAQYSHHVI-QEILGHLDARR-KDSPRVRAGIIQVLLEAVAIAAKGSIGPTV 334
Query: 282 VEIGSVSDLCRHLRKSFQ 299
+E+ + L +HLR S +
Sbjct: 335 LEV--FNTLLKHLRLSVE 350
>sp|Q8IGJ0|EFR3_DROME Protein EFR3 homolog cmp44E OS=Drosophila melanogaster GN=stmA PE=2
SV=3
Length = 834
Score = 40.4 bits (93), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 59/253 (23%), Positives = 105/253 (41%), Gaps = 34/253 (13%)
Query: 175 TPKVWARICIQRMVDLAKETTTMRRVLDPMFTYFDSRRQWIPR----QGLAMIVLSDMAY 230
TP A ++ +V A +R VL P+ T+ D W+P ++++S
Sbjct: 258 TPPALAEEVLRELVGRAS-FGHIRSVLKPLLTHLDRHELWVPNTFAIHTFRIVMISIQPQ 316
Query: 231 LMETSGNQQLILASVIHHLDHKNVSHDPQLKS---YVIQVATALARQIRSGMVLVEIGSV 287
T ++ +++ HLD+ N P+ ++ V+ A+A G ++I +
Sbjct: 317 YSYT------VVETLMQHLDN-NFKSSPKTRTSLAVVLSKIIAIAAGESVGPSALDI--I 367
Query: 288 SDLCRHLRKSFQATVESVGEQESNLNILLRNSIEDCLLEIAKGIGDTRPLFDMMAMTLEK 347
++L HLR S T E E+ L+ + L E A D + + ++M +
Sbjct: 368 NNLLTHLRTSVSTTSEITPEESQYQEALI-----NALGEFANHHPDYQKI-EIMLFIMNT 421
Query: 348 LP-----SSG--VIARATLGSLIILAHMISVASISSRSQQVFPEALLVQILKAMLHPNVE 400
+P S G ++ L SL+ + S S ++ FP + L +LK P+
Sbjct: 422 VPDLSKKSKGDQMLQNILLKSLLKVGTQYSTVSF----EKAFPASFLQPLLKMARAPHNP 477
Query: 401 TRVGAHQIFSVLL 413
TR+ QI LL
Sbjct: 478 TRMVVMQILQALL 490
Score = 36.2 bits (82), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 27/56 (48%), Gaps = 9/56 (16%)
Query: 2 GFISRKIFPACGSMCVCCPALRSRSRQPVKRYKKLLAEIFPKSIADSTYTHNIEKF 57
F+ + P+C C CC ALR R YK+L+ IFP + D N+EK
Sbjct: 19 SFVQKCTDPSC--CCGCCSALRPR-------YKRLVDNIFPVNPEDGLVKSNMEKL 65
>sp|Q5UYI1|MUTS2_HALMA DNA mismatch repair protein MutS 2 OS=Haloarcula marismortui
(strain ATCC 43049 / DSM 3752 / JCM 8966 / VKM B-1809)
GN=mutS2 PE=3 SV=2
Length = 947
Score = 38.5 bits (88), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 44/160 (27%), Positives = 64/160 (40%), Gaps = 11/160 (6%)
Query: 345 LEKLPSSGVIARATLGSLIILAHMISVASISSRSQQVFPEALLVQILKAMLHPNVETRVG 404
LE+L S RA L LA +SV R +A L+ L A L P ETR
Sbjct: 376 LERLISRVSRGRANARDLRSLAATLSVVP-DIRDHLADADARLLADLHATLDPLAETR-- 432
Query: 405 AHQIFSVLLIPSPINQHHEVASVRSGYLHEPQQWHSNAASTTSITALLEKLRRDKNGVKM 464
+ + P P Q E +R GY E + S S LE R++ G+
Sbjct: 433 --EEIEAAIRPDPPQQVTEGGVIREGYDEELDRLRSTEQSGKEWIDELEASERERTGIDS 490
Query: 465 DK----SRYNVHDEIRGR--DSVEDDWKQGHAPKTSSNFY 498
K S + + E+ D+V +D+++ K S +Y
Sbjct: 491 LKVGHTSVHGYYIEVTNANLDAVPEDYQRRQTLKNSERYY 530
>sp|A4XKN9|KCY_CALS8 Cytidylate kinase OS=Caldicellulosiruptor saccharolyticus (strain
ATCC 43494 / DSM 8903) GN=cmk PE=3 SV=1
Length = 226
Score = 38.1 bits (87), Expect = 0.35, Method: Composition-based stats.
Identities = 32/111 (28%), Positives = 53/111 (47%), Gaps = 10/111 (9%)
Query: 612 MFAAKVYNIPGLNDLLKTLIPNDLDPYMGI---GDDLQIYVRPQADVKEYGSFTDNQQAT 668
M+A+ V I + + L I DL G+ G D+ YV P A++K + + T ++A
Sbjct: 96 MYASDVSKIKEVREKL-VKIQQDLAKQKGVIMDGRDIGTYVLPDAELKIFLTATAEERAK 154
Query: 669 SLIYELRNKVYESDKIILDIIVQNLSTIIEVEADDLAKQLQEPFTPDDAIM 719
EL+ K YE D Q L I + + +D+ ++L +DAI+
Sbjct: 155 RRFLELKEKGYEVD------YYQLLDEIKQRDLNDMTRELAPLRVAEDAIV 199
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.132 0.386
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 319,609,581
Number of Sequences: 539616
Number of extensions: 13205073
Number of successful extensions: 34739
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 34727
Number of HSP's gapped (non-prelim): 27
length of query: 898
length of database: 191,569,459
effective HSP length: 127
effective length of query: 771
effective length of database: 123,038,227
effective search space: 94862473017
effective search space used: 94862473017
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 66 (30.0 bits)